Query 029438
Match_columns 193
No_of_seqs 191 out of 454
Neff 5.6
Searched_HMMs 13730
Date Mon Mar 25 21:16:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029438.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/029438hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rqja_ a.128.1.1 (A:) Farnesy 40.2 25 0.0018 27.4 6.0 58 71-128 66-124 (299)
2 d1rtra_ a.128.1.1 (A:) Farnesy 34.6 5.5 0.0004 31.4 1.0 35 81-115 209-254 (290)
3 d1rqja_ a.128.1.1 (A:) Farnesy 25.9 9.9 0.00072 30.0 1.1 37 81-117 215-262 (299)
4 d1rtra_ a.128.1.1 (A:) Farnesy 25.1 42 0.0031 25.9 4.9 53 75-127 67-120 (290)
5 d1wvia_ c.108.1.14 (A:) Putati 14.0 17 0.0013 26.8 -0.0 25 87-111 202-228 (253)
6 d1fpsa_ a.128.1.1 (A:) Farnesy 10.0 24 0.0017 28.2 -0.5 33 81-113 230-272 (348)
7 d1pw4a_ f.38.1.1 (A:) Glycerol 9.0 3.4E+02 0.025 19.7 7.7 24 105-128 82-105 (447)
8 d2j3wa1 d.110.4.3 (A:1-140) Se 8.6 1.4E+02 0.01 20.5 3.4 29 163-192 87-115 (140)
9 d1v4ea_ a.128.1.1 (A:) Octopre 7.8 4E+02 0.029 19.6 12.5 53 74-127 58-110 (280)
10 d1sr9a1 a.5.7.1 (A:437-491) 2- 7.4 81 0.0059 18.7 1.4 12 176-187 42-53 (55)
No 1
>d1rqja_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Escherichia coli [TaxId: 562]}
Probab=40.23 E-value=25 Score=27.42 Aligned_cols=58 Identities=17% Similarity=0.187 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCChhh-hHhcCCcchhHhhchhHHHHHHHHHHHHHHHH
Q 029438 71 LILMGAIMSIFAFVNGLLKDLPDVEG-DKKFGMNTLCVLLGKEKVFPLCVNTMLVGYGC 128 (193)
Q Consensus 71 ~~~~~~~~~l~~~~i~i~kDi~DveG-Dr~~Gi~Tl~v~lG~~~~~~l~~~ll~~~y~~ 128 (193)
..-++...=++=.+.-+-.|++|... |.++|..|.-.++|...+...+-.++..++-.
T Consensus 66 ~~~~A~aiEllH~asLiHDDI~d~d~~~~RRG~pt~h~~~G~~~AIl~Gd~l~~~a~~~ 124 (299)
T d1rqja_ 66 LDAPAAAVECIHAYSLIHDDLPAMDDDDLRRGLPTCHVKFGEANAILAGDALQTLAFSI 124 (299)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSTTTTCCCEETTEECHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccchhhhhhhcccccccceeeeCcchhhhhcchHHHHHHHH
Confidence 33334444445555568889999887 47999999999999999988888888777763
No 2
>d1rtra_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Staphylococcus aureus [TaxId: 1280]}
Probab=34.63 E-value=5.5 Score=31.41 Aligned_cols=35 Identities=29% Similarity=0.371 Sum_probs=23.8
Q ss_pred HHHHHHHHhcCCChhhhH-----------hcCCcchhHhhchhHHH
Q 029438 81 FAFVNGLLKDLPDVEGDK-----------KFGMNTLCVLLGKEKVF 115 (193)
Q Consensus 81 ~~~~i~i~kDi~DveGDr-----------~~Gi~Tl~v~lG~~~~~ 115 (193)
++.+-.+..|+.|+.||. +.|..|+|+.+|.+.+.
T Consensus 209 lG~aFQi~DD~lD~~g~~~~~GK~~g~Di~~gK~T~p~i~a~~~a~ 254 (290)
T d1rtra_ 209 LGMMFQIKDDLLDCYGDEAKLGKKVGSDLENNKSTYVSLLGKDGAE 254 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-------------CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcchHhhccCcccHhhcCCccHHHHHHHHHHH
Confidence 444446999999987654 57889999999988754
No 3
>d1rqja_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Escherichia coli [TaxId: 562]}
Probab=25.92 E-value=9.9 Score=29.98 Aligned_cols=37 Identities=30% Similarity=0.409 Sum_probs=27.8
Q ss_pred HHHHHHHHhcCCChhh-----------hHhcCCcchhHhhchhHHHHH
Q 029438 81 FAFVNGLLKDLPDVEG-----------DKKFGMNTLCVLLGKEKVFPL 117 (193)
Q Consensus 81 ~~~~i~i~kDi~DveG-----------Dr~~Gi~Tl~v~lG~~~~~~l 117 (193)
++.+-.|..|+.|+.| |-+.|..|+|+.+|.+++...
T Consensus 215 lGiaFQi~DD~lD~~~~~~~~GK~~g~Dl~egK~Tlp~i~~le~a~~~ 262 (299)
T d1rqja_ 215 IGLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQARKK 262 (299)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHSSCTTHHHHHTCCCHHHHHCHHHHHHH
T ss_pred HHHHHHHHHHHHhhccchhhcCCchhhHHHCCChhHHHHHHHHHHHHH
Confidence 4444458889988876 555788999999999886544
No 4
>d1rtra_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Staphylococcus aureus [TaxId: 1280]}
Probab=25.05 E-value=42 Score=25.86 Aligned_cols=53 Identities=13% Similarity=0.139 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHhcCCChhhh-HhcCCcchhHhhchhHHHHHHHHHHHHHHH
Q 029438 75 GAIMSIFAFVNGLLKDLPDVEGD-KKFGMNTLCVLLGKEKVFPLCVNTMLVGYG 127 (193)
Q Consensus 75 ~~~~~l~~~~i~i~kDi~DveGD-r~~Gi~Tl~v~lG~~~~~~l~~~ll~~~y~ 127 (193)
+...=++=.+.-+-.|++|+.+| .+.|..|.-.++|...+...+-.++..++-
T Consensus 67 A~avEllH~asLIHDDI~d~D~~~~RRg~pt~~~~~g~~~Ail~Gd~l~~~a~~ 120 (290)
T d1rtra_ 67 AIALEMIHTYSLIHDDLPAMDNDDYRRGKLTNHKVYGEWTAILAGDALLTKAFE 120 (290)
T ss_dssp HHHHHHHHHHHHHHHHSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcchhhhhhhhhhhcchhhHHHhhhhHHHHcCcchhHHHHH
Confidence 33444455555688999998775 588999999999999998888877776665
No 5
>d1wvia_ c.108.1.14 (A:) Putative phosphatase SMU.1415c {Streptococcus mutans [TaxId: 1309]}
Probab=14.04 E-value=17 Score=26.83 Aligned_cols=25 Identities=28% Similarity=0.316 Sum_probs=21.5
Q ss_pred HHhc-CC-ChhhhHhcCCcchhHhhch
Q 029438 87 LLKD-LP-DVEGDKKFGMNTLCVLLGK 111 (193)
Q Consensus 87 i~kD-i~-DveGDr~~Gi~Tl~v~lG~ 111 (193)
.+.| .+ |++|=++.|++|+-|.-|.
T Consensus 202 mIGDs~~~DI~gA~~aG~~si~V~~G~ 228 (253)
T d1wvia_ 202 MVGDNYLTDITAGIKNDIATLLVTTGF 228 (253)
T ss_dssp EEESCTTTTHHHHHHTTCEEEEESSSS
T ss_pred EEcCChHHHHHHHHHCCCCEEEECCCC
Confidence 5667 67 9999999999999988774
No 6
>d1fpsa_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=10.00 E-value=24 Score=28.17 Aligned_cols=33 Identities=15% Similarity=0.048 Sum_probs=24.9
Q ss_pred HHHHHHHHhcCCChhh----------hHhcCCcchhHhhchhH
Q 029438 81 FAFVNGLLKDLPDVEG----------DKKFGMNTLCVLLGKEK 113 (193)
Q Consensus 81 ~~~~i~i~kDi~DveG----------Dr~~Gi~Tl~v~lG~~~ 113 (193)
++.+-.|..|+-|+.| |-+.|..|+|+.+..++
T Consensus 230 lGiaFQI~DDilD~~gd~~~~GK~g~Dl~egK~Tlpii~al~~ 272 (348)
T d1fpsa_ 230 MGEYFQIQDDYLDCFGDPALTGKVGTDIQDNKCSWLVVQCLQR 272 (348)
T ss_dssp HHHHHHHHHHHHHHSCCSSCCSSCSCCCSSCCCCHHHHHHHHT
T ss_pred cchHHHHHHHHhhhhcchhccCcccccccCCccHHHHHHHHHh
Confidence 4445569999999887 45568999999997653
No 7
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=9.02 E-value=3.4e+02 Score=19.71 Aligned_cols=24 Identities=4% Similarity=-0.179 Sum_probs=17.2
Q ss_pred hhHhhchhHHHHHHHHHHHHHHHH
Q 029438 105 LCVLLGKEKVFPLCVNTMLVGYGC 128 (193)
Q Consensus 105 l~v~lG~~~~~~l~~~ll~~~y~~ 128 (193)
+.-|+|+|+...++..+..++.+.
T Consensus 82 l~Dr~g~r~~~~~~~~~~~~~~~~ 105 (447)
T d1pw4a_ 82 VSDRSNPRVFLPAGLILAAAVMLF 105 (447)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCchHHHHHHHHHHHHHHhh
Confidence 344789999988887776665553
No 8
>d2j3wa1 d.110.4.3 (A:1-140) Sedlin (SEDL) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=8.57 E-value=1.4e+02 Score=20.48 Aligned_cols=29 Identities=14% Similarity=0.374 Sum_probs=23.3
Q ss_pred ccCCChhHHHHHHHHHHHHHHHHHHhhhhc
Q 029438 163 VDLDNFESTFGFYMLIWKLTFVEYILIHFL 192 (193)
Q Consensus 163 ~d~~~~~a~~~fY~fiW~lf~~ey~l~p~~ 192 (193)
.|.++++.++.|.+-+++++ .+|++=||.
T Consensus 87 td~~~~~~i~~~~~~v~~lY-v~~v~NPfy 115 (140)
T d2j3wa1 87 HDVRQEDGIKNFFTDVYDLY-IKFAMNPFY 115 (140)
T ss_dssp ESSCCHHHHHHHHHHHHHHH-HHHHHSTTC
T ss_pred eCCCcchHHHHHHHHHHHHH-HHHhhCccC
Confidence 35566778999999999776 699998874
No 9
>d1v4ea_ a.128.1.1 (A:) Octoprenyl-diphosphate synthase {Thermotoga maritima [TaxId: 2336]}
Probab=7.75 E-value=4e+02 Score=19.63 Aligned_cols=53 Identities=13% Similarity=0.165 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHhcCCChhhhHhcCCcchhHhhchhHHHHHHHHHHHHHHH
Q 029438 74 MGAIMSIFAFVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKVFPLCVNTMLVGYG 127 (193)
Q Consensus 74 ~~~~~~l~~~~i~i~kDi~DveGDr~~Gi~Tl~v~lG~~~~~~l~~~ll~~~y~ 127 (193)
.++..=++=.+.-|-.|+.| +.|.+.|..|.=.++|...+...+-.++..++-
T Consensus 58 ~AaaiEliH~asLIhDDi~D-~s~~RRG~pt~h~~~g~~~ail~gd~l~~~a~~ 110 (280)
T d1v4ea_ 58 SLAALELVHLASLLHDDVID-GARFRRGKETINFMYGDKAAVAAGDLVLVSAFH 110 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-TCSEETTEECHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHhh-hcccccccchhhhccchhhhhhhHHHHHHhhhh
Confidence 33344444455557899988 778899999999999999998888777776655
No 10
>d1sr9a1 a.5.7.1 (A:437-491) 2-isopropylmalate synthase LeuA, communication domain {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=7.41 E-value=81 Score=18.73 Aligned_cols=12 Identities=25% Similarity=0.545 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHH
Q 029438 176 MLIWKLTFVEYI 187 (193)
Q Consensus 176 ~fiW~lf~~ey~ 187 (193)
.-||.+|--||+
T Consensus 42 ~~I~~~F~~~Yl 53 (55)
T d1sr9a1 42 KEMWDAFAEEYL 53 (55)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhc
Confidence 458999998885
Done!