Query 029440
Match_columns 193
No_of_seqs 122 out of 682
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 12:57:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029440.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029440hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1607 Protein transporter of 100.0 1.5E-38 3.3E-43 275.0 13.2 153 19-189 45-197 (318)
2 COG5058 LAG1 Protein transport 100.0 1.4E-38 3.1E-43 273.2 8.6 153 19-189 113-268 (395)
3 KOG1608 Protein transporter of 100.0 9.6E-29 2.1E-33 210.6 12.6 155 16-188 73-227 (374)
4 smart00724 TLC TRAM, LAG1 and 99.9 6.8E-22 1.5E-26 161.1 11.5 110 73-190 1-111 (205)
5 PF03798 TRAM_LAG1_CLN8: TLC d 99.7 9.6E-17 2.1E-21 128.7 10.1 105 74-189 1-108 (198)
6 PF08390 TRAM1: TRAM1-like pro 98.7 4.9E-08 1.1E-12 66.9 5.2 40 18-57 24-63 (65)
7 KOG4474 Uncharacterized conser 90.7 3.8 8.2E-05 35.2 10.3 83 73-169 44-127 (253)
8 PF11658 DUF3260: Protein of u 83.2 4.7 0.0001 37.9 7.2 88 80-191 41-128 (518)
9 TIGR03368 cellulose_yhjU cellu 80.6 6.7 0.00015 36.8 7.2 87 80-190 42-128 (518)
10 PRK13454 F0F1 ATP synthase sub 48.4 91 0.002 25.0 7.0 46 7-53 12-61 (181)
11 PF05026 DCP2: Dcp2, box A dom 34.1 54 0.0012 23.4 3.1 45 117-162 15-64 (85)
12 PF11014 DUF2852: Protein of u 31.9 65 0.0014 24.5 3.4 29 161-190 8-36 (115)
13 PRK08476 F0F1 ATP synthase sub 23.6 2.8E+02 0.006 21.2 5.8 28 26-53 10-37 (141)
14 PF00599 Flu_M2: Influenza Mat 22.9 37 0.00079 24.5 0.6 58 4-61 7-66 (97)
15 KOG4349 Uncharacterized conser 22.5 1.3E+02 0.0028 23.3 3.5 38 146-188 34-71 (143)
16 PF15007 CEP44: Centrosomal sp 21.8 1.4E+02 0.003 23.2 3.6 45 30-83 33-77 (131)
17 PF07856 Orai-1: Mediator of C 20.4 4.6E+02 0.01 21.1 6.9 18 70-87 100-117 (175)
No 1
>KOG1607 consensus Protein transporter of the TRAM (translocating chain-associating membrane) superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.5e-38 Score=275.02 Aligned_cols=153 Identities=37% Similarity=0.685 Sum_probs=142.3
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcccchhhhhHHHHhHhhhhhhHHHHHHHHhhhhhheeec
Q 029440 19 AYEDFAVLPLFALYFPSVRFFLEKFVFEKVAKRWIFGKGHHMLDFKTSERKKKIRKFNESAWKCVYFLTAELLALSVTYD 98 (193)
Q Consensus 19 ~~~Dl~~~~~~a~~~~~vR~~l~~~v~~pl~~~l~~~k~~~~~~~~~~~r~~~~~Kf~Es~w~~~yy~~~~~~g~~vl~~ 98 (193)
+..|.++..+++..++..|....-.+..|...+.+..++ .+.+||+||+|+++||++++++|++|+++
T Consensus 45 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~------------~~~~k~~Es~Wk~~yy~~s~~~glyV~~~ 112 (318)
T KOG1607|consen 45 GASDICFLRFYLLFFTFTRLFLMLLVGRPFPLRLNVTAD------------RRKKKFCESAWKFLYYLVSWIFGLYVMYH 112 (318)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHhhhHHHhcCCcCc------------hhhhhhHHHHHHHHHHHHHHHHhhhheec
Confidence 578999999999999999999888888888888765432 22289999999999999999999999999
Q ss_pred CCCCCChhhhhcCCCCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHhcchh
Q 029440 99 EPWFKNTRCFWVGPGNQVWPDQKIKLKLKGVYMYAAGFYTYSIFALMFWETRRADFGVSMGHHVATVILIVLSYIFRFAL 178 (193)
Q Consensus 99 ~pw~~~~~~~w~~~~~~~yP~~~~~~~~~~yYl~q~afy~~~~~~~~~~e~~RkDf~em~~HHiiTi~Li~~SY~~nf~R 178 (193)
+||+.|++.+|.+ ||+++++.++|+||++|+|||.|+++. ++.|++||||+||++||++|++||++||.+||+|
T Consensus 113 ~~wf~~~k~~w~~-----yP~~~~~~~~k~~Y~~e~gfY~~~l~a-l~~d~~rkDf~~m~vHHvvTl~Li~lSy~~~f~R 186 (318)
T KOG1607|consen 113 EPWFYDTKSFWEG-----YPDQTLPPSFKAYYLLEAGFYIQLLFA-LFLDEKRKDFWEMVVHHVVTLILISLSYVFNFTR 186 (318)
T ss_pred chhhcCHHHHHhc-----CCCCCCCHHHHHHHHHhhHHHHHHHHH-HHhhccccHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 9999999999999 999999999999999999999999999 6789999999999999999999999999999999
Q ss_pred hHHHHHHHHHh
Q 029440 179 IQFCYCLLFFW 189 (193)
Q Consensus 179 iG~lVl~L~d~ 189 (193)
+|.+|+++||.
T Consensus 187 ~G~lil~lhD~ 197 (318)
T KOG1607|consen 187 VGTLILALHDA 197 (318)
T ss_pred ccceeeeeecc
Confidence 99999999995
No 2
>COG5058 LAG1 Protein transporter of the TRAM (translocating chain-associating membrane) superfamily, longevity assurance factor [Intracellular trafficking and secretion]
Probab=100.00 E-value=1.4e-38 Score=273.15 Aligned_cols=153 Identities=25% Similarity=0.467 Sum_probs=145.2
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcccchhhhhHHHHhHhhhhhhHHHHHHHHhhhhhheeec
Q 029440 19 AYEDFAVLPLFALYFPSVRFFLEKFVFEKVAKRWIFGKGHHMLDFKTSERKKKIRKFNESAWKCVYFLTAELLALSVTYD 98 (193)
Q Consensus 19 ~~~Dl~~~~~~a~~~~~vR~~l~~~v~~pl~~~l~~~k~~~~~~~~~~~r~~~~~Kf~Es~w~~~yy~~~~~~g~~vl~~ 98 (193)
|+.|++++++++++++.+|.+++..|++|++..++++. ++|++|||||+|.++||++++.+|+|++++
T Consensus 113 G~~d~~F~lfy~ifftf~ref~md~virpf~l~~~v~s------------~kkikRf~eq~y~~fyy~v~g~~Glyvmrs 180 (395)
T COG5058 113 GILDLCFVLFYMIFFTFLREFLMDVVIRPFGLELNVRS------------EKKIKRFCEQMYAIFYYGVSGPFGLYVMRS 180 (395)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCC------------HHHHHHHHHHHHHHHHhhccccceEEEEec
Confidence 68899999999999999999999999999999988764 488899999999999999999999999999
Q ss_pred CC-CCCChhhhhcCCCCCCCCCCccchhhHHHHHHHHHHHHHH--HHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHhc
Q 029440 99 EP-WFKNTRCFWVGPGNQVWPDQKIKLKLKGVYMYAAGFYTYS--IFALMFWETRRADFGVSMGHHVATVILIVLSYIFR 175 (193)
Q Consensus 99 ~p-w~~~~~~~w~~~~~~~yP~~~~~~~~~~yYl~q~afy~~~--~~~~~~~e~~RkDf~em~~HHiiTi~Li~~SY~~n 175 (193)
+| |+.+++.+|.+ ||....|+.+|.||++|+|||.|| ++. +..|.+||||+||+.||++|++||..||.++
T Consensus 181 s~~w~fntk~l~et-----yp~~~~p~lfk~fYliqaafw~qQa~ilv-LqlEkprkD~~elv~HHIVTllLI~lSY~fh 254 (395)
T COG5058 181 SPLWFFNTKALYET-----YPVFYNPFLFKAFYLIQAAFWAQQACILV-LQLEKPRKDFKELVFHHIVTLLLIWLSYVFH 254 (395)
T ss_pred CcchhhhhHHHHHh-----CccccCcHHHHHHHHHHHHHHHHHHhhhe-eeecchhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99 77799999999 999999999999999999999999 555 5689999999999999999999999999999
Q ss_pred chhhHHHHHHHHHh
Q 029440 176 FALIQFCYCLLFFW 189 (193)
Q Consensus 176 f~RiG~lVl~L~d~ 189 (193)
|+|+|+.|...||.
T Consensus 255 ftr~GlAI~itmDv 268 (395)
T COG5058 255 FTRMGLAIYITMDV 268 (395)
T ss_pred HHhccceEEEEEec
Confidence 99999999999985
No 3
>KOG1608 consensus Protein transporter of the TRAM (translocating chain-associating membrane) superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=9.6e-29 Score=210.61 Aligned_cols=155 Identities=18% Similarity=0.390 Sum_probs=149.1
Q ss_pred CCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcccchhhhhHHHHhHhhhhhhHHHHHHHHhhhhhhe
Q 029440 16 SYPAYEDFAVLPLFALYFPSVRFFLEKFVFEKVAKRWIFGKGHHMLDFKTSERKKKIRKFNESAWKCVYFLTAELLALSV 95 (193)
Q Consensus 16 ~~p~~~Dl~~~~~~a~~~~~vR~~l~~~v~~pl~~~l~~~k~~~~~~~~~~~r~~~~~Kf~Es~w~~~yy~~~~~~g~~v 95 (193)
.+.|++|++.+++|.++++++++++|+|+++++.+++.++| .|..||+||+...+||..|.++|.++
T Consensus 73 Y~yGikDl~tifFY~l~~IIiHAviQEyvLDKIsKr~hlSK-------------~k~~kFnESgql~~Fy~~S~vwg~~i 139 (374)
T KOG1608|consen 73 YYYGIKDLATIFFYMLVAIIIHAVIQEYVLDKISKRLHLSK-------------VKHSKFNESGQLVAFYLFSCVWGFYI 139 (374)
T ss_pred eeechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH-------------hhhhhhccCCeeeehhhHHhhhhhee
Confidence 45589999999999999999999999999999999999876 67899999999999999999999999
Q ss_pred eecCCCCCChhhhhcCCCCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHhc
Q 029440 96 TYDEPWFKNTRCFWVGPGNQVWPDQKIKLKLKGVYMYAAGFYTYSIFALMFWETRRADFGVSMGHHVATVILIVLSYIFR 175 (193)
Q Consensus 96 l~~~pw~~~~~~~w~~~~~~~yP~~~~~~~~~~yYl~q~afy~~~~~~~~~~e~~RkDf~em~~HHiiTi~Li~~SY~~n 175 (193)
+..|.+..|++..|.| ||+++++..+|+||+.|+|||+|++++++|+++||.|....+.|-+..+..|+++|..|
T Consensus 140 li~E~yl~~p~~lW~~-----yPh~~msfq~Kffyi~QlaYwlHafPElYfQK~Kkeeiprqlvyi~l~l~hI~gAYlln 214 (374)
T KOG1608|consen 140 LISEGYLSDPTSLWEG-----YPHRVMSFQMKFFYISQLAYWLHAFPELYFQKTKKEEIPRQLVYIILHLFHIAGAYLLN 214 (374)
T ss_pred eeecccccChHHHHhc-----CCCchhhHHHHHHHHHHHHHHHHHChHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHH
Q 029440 176 FALIQFCYCLLFF 188 (193)
Q Consensus 176 f~RiG~lVl~L~d 188 (193)
+.|+|.+.+.|+-
T Consensus 215 l~rlgLvLl~LhY 227 (374)
T KOG1608|consen 215 LNRLGLVLLTLHY 227 (374)
T ss_pred hHHHHHHHHHHHH
Confidence 9999999998863
No 4
>smart00724 TLC TRAM, LAG1 and CLN8 homology domains. Protein domain with at least 5 transmembrane alpha-helices. Lag1p and Lac1p are essential for acyl-CoA-dependent ceramide synthesis, TRAM is a subunit of the translocon and the CLN8 gene is mutated in Northern epilepsy syndrome. The family may possess multiple functions such as lipid trafficking, metabolism, or sensing. Trh homologues possess additional homeobox domains.
Probab=99.87 E-value=6.8e-22 Score=161.15 Aligned_cols=110 Identities=32% Similarity=0.575 Sum_probs=103.9
Q ss_pred hHhhhhhhHHHHHHHHhhhhhheeecCCCCCChhhhhcCCCCCCCCCCccchhhHHHHHHHHHHHHHHHHHHH-hhhccc
Q 029440 73 RKFNESAWKCVYFLTAELLALSVTYDEPWFKNTRCFWVGPGNQVWPDQKIKLKLKGVYMYAAGFYTYSIFALM-FWETRR 151 (193)
Q Consensus 73 ~Kf~Es~w~~~yy~~~~~~g~~vl~~~pw~~~~~~~w~~~~~~~yP~~~~~~~~~~yYl~q~afy~~~~~~~~-~~e~~R 151 (193)
+|++|+.||+++|+.+++.|++++..++|++|+. .+ +|.++.++..+.||.+|+|||+++++.+. +.+.+|
T Consensus 1 ~k~~e~~~~~vs~~hs~~~~~~~~~~~~~~~~~~---~~-----~p~~~~~~~~~~~~~~~~gYfi~d~~~~~~~~~~~~ 72 (205)
T smart00724 1 SKFNESSNRLVSYLHSVIAGLYALYSEPWLSDPK---SL-----YPIQGMSPLAKFYYLFSLGYFIHDLVALLLFQDLKR 72 (205)
T ss_pred CchHHHHHHHHHHHHHHHHHHhhhccCCcccCCc---cc-----CCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcccch
Confidence 4899999999999999999999999999988887 56 99999999999999999999999999865 689999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHhh
Q 029440 152 ADFGVSMGHHVATVILIVLSYIFRFALIQFCYCLLFFWL 190 (193)
Q Consensus 152 kDf~em~~HHiiTi~Li~~SY~~nf~RiG~lVl~L~d~~ 190 (193)
||++||+.||++|++++..||..|+.|+|.++++++|.-
T Consensus 73 ~d~~~~~~HHv~~~~~~~~~~~~~~~~~~~~~~~l~E~s 111 (205)
T smart00724 73 KDFKEMLVHHIATLLLISLSYVLNFTRLGLLLLLLHELS 111 (205)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999999963
No 5
>PF03798 TRAM_LAG1_CLN8: TLC domain; InterPro: IPR006634 TLC is a protein domain with at least 5 transmembrane alpha-helices. Lag1p and Lac1p are essential for acyl-CoA-dependent ceramide synthesis [], TRAM is a subunit of the translocon and the CLN8 gene is mutated in Northern epilepsy syndrome. Proteins containing this domain may possess multiple functions such as lipid trafficking, metabolism, or sensing. Trh homologues possess additional homeobox domains [].; GO: 0016021 integral to membrane
Probab=99.70 E-value=9.6e-17 Score=128.72 Aligned_cols=105 Identities=25% Similarity=0.555 Sum_probs=95.6
Q ss_pred HhhhhhhHHHHHHHHhhhhhheeecCCCCCChhhhhcCCCCCCCCCCcc---chhhHHHHHHHHHHHHHHHHHHHhhhcc
Q 029440 74 KFNESAWKCVYFLTAELLALSVTYDEPWFKNTRCFWVGPGNQVWPDQKI---KLKLKGVYMYAAGFYTYSIFALMFWETR 150 (193)
Q Consensus 74 Kf~Es~w~~~yy~~~~~~g~~vl~~~pw~~~~~~~w~~~~~~~yP~~~~---~~~~~~yYl~q~afy~~~~~~~~~~e~~ 150 (193)
||+|+++.++++++++++|++++.++| ++|.+ ||+.+. +...+.++.+++||++++++.++..+++
T Consensus 1 ~~~~~~~s~~h~~~~~~~~~~~l~~~~------~~~~~-----~~~~~~~~~~~~~~~~~~~~~gYf~~Dl~~~~~~~~~ 69 (198)
T PF03798_consen 1 KWNNRVVSFVHAIVSSIWGLYILLNDP------ELWSD-----WPDDPWYYSSWLVKFYYAFSLGYFLYDLIVMLLYYRK 69 (198)
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHhcCc------HHhhh-----cccCccCCccHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 789999999999999999999999888 67776 666554 4588999999999999999997777888
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHh
Q 029440 151 RADFGVSMGHHVATVILIVLSYIFRFALIQFCYCLLFFW 189 (193)
Q Consensus 151 RkDf~em~~HHiiTi~Li~~SY~~nf~RiG~lVl~L~d~ 189 (193)
|+|+++|+.||++|+.++..||..|+.|.|+++++++|.
T Consensus 70 ~~d~~~~~~HH~~~l~~~~~~~~~~~~~~~~~~~ll~E~ 108 (198)
T PF03798_consen 70 RGDFWEMLLHHVVTLVLFYFSYFYNFGRFGIVVFLLHEI 108 (198)
T ss_pred hhhhhHhhHHHHHHHHHHHHhhHHHHhhHHHHHHHHHhc
Confidence 889999999999999999999999999999999999985
No 6
>PF08390 TRAM1: TRAM1-like protein; InterPro: IPR013599 This family comprises sequences that are similar to human TRAM1 (Q15629 from SWISSPROT). This is a transmembrane protein of the endoplasmic reticulum, thought to be involved in the membrane transfer of secretory proteins []. The region featured in this family is found N-terminal to the longevity-assurance protein region (IPR005547 from INTERPRO).
Probab=98.66 E-value=4.9e-08 Score=66.88 Aligned_cols=40 Identities=20% Similarity=0.472 Sum_probs=37.6
Q ss_pred CCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 029440 18 PAYEDFAVLPLFALYFPSVRFFLEKFVFEKVAKRWIFGKG 57 (193)
Q Consensus 18 p~~~Dl~~~~~~a~~~~~vR~~l~~~v~~pl~~~l~~~k~ 57 (193)
.|++|++++++++++++++|.++|++|++|+|++++++|+
T Consensus 24 ~G~~D~~fV~fy~i~~t~lRa~~m~yvl~Plar~~gi~k~ 63 (65)
T PF08390_consen 24 KGWDDLYFVFFYIIVFTFLRAFLMEYVLDPLARKLGISKK 63 (65)
T ss_pred cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 3789999999999999999999999999999999998764
No 7
>KOG4474 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.67 E-value=3.8 Score=35.20 Aligned_cols=83 Identities=17% Similarity=0.276 Sum_probs=53.5
Q ss_pred hHhhhhhhHHHHHHHHhhhhhheeecCC-CCCChhhhhcCCCCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhccc
Q 029440 73 RKFNESAWKCVYFLTAELLALSVTYDEP-WFKNTRCFWVGPGNQVWPDQKIKLKLKGVYMYAAGFYTYSIFALMFWETRR 151 (193)
Q Consensus 73 ~Kf~Es~w~~~yy~~~~~~g~~vl~~~p-w~~~~~~~w~~~~~~~yP~~~~~~~~~~yYl~q~afy~~~~~~~~~~e~~R 151 (193)
.||..-.=.+.--+++..++.+.+.+.| -.-|+-.++.. .-..--++.+||.++.++- +..+++-
T Consensus 44 ~r~~n~~VSl~HS~Isg~~a~~~l~~~~~~~~~~~~~~s~-------------~~~~l~~fS~gYfiyD~vD-m~~~~~s 109 (253)
T KOG4474|consen 44 KRFSNLTVSLLHSTISGLWALLSLLYDPEMVDDPITYHSL-------------SAYQLLLFSAGYFIYDLVD-MLMNEQS 109 (253)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHhCcccccCHHHHHhh-------------hhHHHHHHHHHHHHHHHHH-HHhcchh
Confidence 4555544445555566666666666666 22344444322 1233446688999999999 5567778
Q ss_pred chHHHHHHHHHHHHHHHH
Q 029440 152 ADFGVSMGHHVATVILIV 169 (193)
Q Consensus 152 kDf~em~~HHiiTi~Li~ 169 (193)
.+-+|.+.||++++.-.+
T Consensus 110 ~~s~e~LvHH~v~i~aF~ 127 (253)
T KOG4474|consen 110 ELSWEYLVHHVVCIIAFV 127 (253)
T ss_pred hhhHHHHHHHHHHHHHHH
Confidence 899999999998875443
No 8
>PF11658 DUF3260: Protein of unknown function (DUF3260); InterPro: IPR017744 This protein was identified by the partial phylogenetic profiling algorithm [] as part of the system for cellulose biosynthesis in bacteria, and in fact is found in cellulose biosynthesis gene regions. The protein was designated YhjU in Salmonella enteritidis, where disruption of its gene disrupts cellulose biosynthesis and biofilm formation [].
Probab=83.22 E-value=4.7 Score=37.94 Aligned_cols=88 Identities=14% Similarity=0.335 Sum_probs=62.3
Q ss_pred hHHHHHHHHhhhhhheeecCCCCCChhhhhcCCCCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHH
Q 029440 80 WKCVYFLTAELLALSVTYDEPWFKNTRCFWVGPGNQVWPDQKIKLKLKGVYMYAAGFYTYSIFALMFWETRRADFGVSMG 159 (193)
Q Consensus 80 w~~~yy~~~~~~g~~vl~~~pw~~~~~~~w~~~~~~~yP~~~~~~~~~~yYl~q~afy~~~~~~~~~~e~~RkDf~em~~ 159 (193)
|+-.=+.+....|+..++++.|++.....|...+ + -..+ +.+|++ .+.. -|.. ++|+.
T Consensus 41 l~~~R~~iAipig~aLly~DswLPp~~rl~~q~~-----q---l~~F------S~~Yl~-EL~~-Rfin------~~ml~ 98 (518)
T PF11658_consen 41 LRRLRHWIAIPIGIALLYHDSWLPPFDRLWSQAG-----Q---LAGF------SFSYLL-ELAG-RFIN------WQMLG 98 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHH-----H---HhcC------CHHHHH-HHHH-hcCC------HHHHH
Confidence 4445567788999999999999999999997721 0 1112 334444 2233 3333 77876
Q ss_pred HHHHHHHHHHHHHHhcchhhHHHHHHHHHhhh
Q 029440 160 HHVATVILIVLSYIFRFALIQFCYCLLFFWLL 191 (193)
Q Consensus 160 HHiiTi~Li~~SY~~nf~RiG~lVl~L~d~~~ 191 (193)
.+..+++++-++.++.||.+.|+.-+=|+.
T Consensus 99 --a~~vl~v~y~~ls~wiRvttfvv~~l~~l~ 128 (518)
T PF11658_consen 99 --AAFVLLVAYLFLSQWIRVTTFVVAALVWLN 128 (518)
T ss_pred --HHHHHHHHHHHHhhhhhhHHHHHHHHHHHh
Confidence 455677888889999999999999887763
No 9
>TIGR03368 cellulose_yhjU cellulose synthase operon protein YhjU. This protein was identified by the partial phylogenetic profiling algorithm (PubMed:16930487) as part of the system for cellulose biosynthesis in bacteria, and in fact is found in cellulose biosynthesis gene regions. The protein was designated YhjU in Salmonella enteritidis, where disruption of its gene disrupts cellulose biosynthesis and biofilm formation (PubMed:11929533).
Probab=80.60 E-value=6.7 Score=36.83 Aligned_cols=87 Identities=11% Similarity=0.255 Sum_probs=61.0
Q ss_pred hHHHHHHHHhhhhhheeecCCCCCChhhhhcCCCCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHH
Q 029440 80 WKCVYFLTAELLALSVTYDEPWFKNTRCFWVGPGNQVWPDQKIKLKLKGVYMYAAGFYTYSIFALMFWETRRADFGVSMG 159 (193)
Q Consensus 80 w~~~yy~~~~~~g~~vl~~~pw~~~~~~~w~~~~~~~yP~~~~~~~~~~yYl~q~afy~~~~~~~~~~e~~RkDf~em~~ 159 (193)
|+-.=+.+....|+.+++++.|++.....|...+ + -.. ++++|++ .++. -|.. ++|+.
T Consensus 42 l~~~R~~iAipigi~Lly~Ds~LPp~~rl~~q~~-----q---l~~------Fs~~Yl~-EL~~-Rfi~------~~ml~ 99 (518)
T TIGR03368 42 LRILRQFIAVPAGIALLYRDSWLPPLDRLWSQGG-----Q---LQG------FSLGYLV-ELLG-RFVN------WQMLL 99 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHH-----H---Hhc------cCHHHHH-HHHH-hhCC------HHHHH
Confidence 4445566778899999999999999999987611 1 011 2344444 3333 3333 67775
Q ss_pred HHHHHHHHHHHHHHhcchhhHHHHHHHHHhh
Q 029440 160 HHVATVILIVLSYIFRFALIQFCYCLLFFWL 190 (193)
Q Consensus 160 HHiiTi~Li~~SY~~nf~RiG~lVl~L~d~~ 190 (193)
.+..+++++-++.+..|+++.|+.-|=|+
T Consensus 100 --~~~v~lv~Y~~lsqwiRvttfvv~~li~l 128 (518)
T TIGR03368 100 --AIFVVLVAYLLLNQWIRVTTFVVAALIAL 128 (518)
T ss_pred --HHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Confidence 55667888888999999999999888775
No 10
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=48.43 E-value=91 Score=25.03 Aligned_cols=46 Identities=11% Similarity=0.234 Sum_probs=30.5
Q ss_pred CCCCCCCCCCCCCCCchh----hHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 029440 7 VKSVNWEQESYPAYEDFA----VLPLFALYFPSVRFFLEKFVFEKVAKRWI 53 (193)
Q Consensus 7 ~~~~~w~~~~~p~~~Dl~----~~~~~a~~~~~vR~~l~~~v~~pl~~~l~ 53 (193)
|-+.....++.|.+ |.. -.+...+.+.++=+++.++++.|+.+.+.
T Consensus 12 ~~~~~~~~~gmp~l-d~~t~~~q~~~~lI~F~iL~~ll~k~l~~PI~~~l~ 61 (181)
T PRK13454 12 AAGHAASAPGMPQL-DFSTFPNQIFWLLVTLVAIYFVLTRVALPRIGAVLA 61 (181)
T ss_pred ccccccCCCCCCCC-cHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666777876 332 23444556666777888999999998864
No 11
>PF05026 DCP2: Dcp2, box A domain; InterPro: IPR007722 This presumed domain is always found to the N-terminal side of the NUDIX hydrolase domain IPR000086 from INTERPRO. This domain appears to be specific to mRNA decapping protein 2 P53550 from SWISSPROT and its close homologues. This region has been termed Box A [].; GO: 0003723 RNA binding, 0016787 hydrolase activity, 0030145 manganese ion binding; PDB: 2QKM_H 2A6T_B 2QKL_B.
Probab=34.12 E-value=54 Score=23.42 Aligned_cols=45 Identities=11% Similarity=0.164 Sum_probs=30.5
Q ss_pred CCCCccchhhHHHHHHHHHHHHHHHHHHHhh-----hcccchHHHHHHHHH
Q 029440 117 WPDQKIKLKLKGVYMYAAGFYTYSIFALMFW-----ETRRADFGVSMGHHV 162 (193)
Q Consensus 117 yP~~~~~~~~~~yYl~q~afy~~~~~~~~~~-----e~~RkDf~em~~HHi 162 (193)
=|....+...++++.+|-|+|...=+. .-. ...-|+|.+++.+|+
T Consensus 15 ~P~eel~~~eRl~FqiE~AhWfY~Df~-~~~~p~Lp~~~lk~F~~~if~~c 64 (85)
T PF05026_consen 15 LPEEELSSFERLCFQIEEAHWFYEDFY-REQNPSLPSMSLKEFAKQIFQHC 64 (85)
T ss_dssp S-CCCST-HHHHHHHHHHHHHHHHHTT-TTTTTTS----HHHHHHHHHTT-
T ss_pred CCHHHHccHHHHHHHHHHHHHHHHHHh-hhhcCCCCCCCHHHHHHHHHHHC
Confidence 688888889999999999999866443 111 123478888888885
No 12
>PF11014 DUF2852: Protein of unknown function (DUF2852); InterPro: IPR021273 This bacterial family of proteins has no known function.
Probab=31.90 E-value=65 Score=24.47 Aligned_cols=29 Identities=21% Similarity=0.385 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHhcchhhHHHHHHHHHhh
Q 029440 161 HVATVILIVLSYIFRFALIQFCYCLLFFWL 190 (193)
Q Consensus 161 HiiTi~Li~~SY~~nf~RiG~lVl~L~d~~ 190 (193)
+-++|.++++..+. |..+|+++|.-|=|-
T Consensus 8 ~~a~Ia~mVlGFi~-fWPlGla~Lay~iw~ 36 (115)
T PF11014_consen 8 KPAWIAAMVLGFIV-FWPLGLALLAYMIWG 36 (115)
T ss_pred chHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 34788999999997 999999999887663
No 13
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=23.58 E-value=2.8e+02 Score=21.22 Aligned_cols=28 Identities=11% Similarity=0.127 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 029440 26 LPLFALYFPSVRFFLEKFVFEKVAKRWI 53 (193)
Q Consensus 26 ~~~~a~~~~~vR~~l~~~v~~pl~~~l~ 53 (193)
.++-.+.+.++=+++.+++++|+.+.+.
T Consensus 10 ~~~qli~Flil~~~l~kfl~kPi~~~l~ 37 (141)
T PRK08476 10 MLATFVVFLLLIVILNSWLYKPLLKFMD 37 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556666667788889999988764
No 14
>PF00599 Flu_M2: Influenza Matrix protein (M2); InterPro: IPR002089 This entry contains Influenza virus matrix protein 2. It is an integral membrane protein that is expressed on the infected cell surface and incorporated into virions where it is a minor component. The protein spans the viral membrane with an extracellular amino-terminus and a cytoplasmic carboxy-terminus. The transmembrane domain of the M2 protein forms the channel pore. The M2 protein, which forms a homotetramer, has H+ ion channel which was found to be regulated by pH [ and may have a pivotal role in the biology of Influenza virus infection [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015992 proton transport, 0033644 host cell membrane, 0055036 virion membrane; PDB: 2L0J_A 2KWX_B 2KIH_A 2RLF_A 1MP6_A 2LJB_D 2LJC_A 2H95_B 1NYJ_B 3BKD_E ....
Probab=22.94 E-value=37 Score=24.53 Aligned_cols=58 Identities=14% Similarity=0.306 Sum_probs=17.5
Q ss_pred cCCCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--cCCCCcc
Q 029440 4 VELVKSVNWEQESYPAYEDFAVLPLFALYFPSVRFFLEKFVFEKVAKRWIF--GKGHHML 61 (193)
Q Consensus 4 ~~~~~~~~w~~~~~p~~~Dl~~~~~~a~~~~~vR~~l~~~v~~pl~~~l~~--~k~~~~~ 61 (193)
+|-|....|+=.....-+++.++.-..-++-++-.+++|..++-+-+++.. .++|+..
T Consensus 7 VetptrneWeCrc~~ssd~lv~aA~IiGILHLiLWI~DRlffkciYrr~kyglk~gpsTe 66 (97)
T PF00599_consen 7 VETPTRNEWECRCSDSSDPLVIAANIIGILHLILWILDRLFFKCIYRRFKYGLKRGPSTE 66 (97)
T ss_dssp ----------------HHHHHHHHHHHHHHHHHHHHHHHCTCCHHHHHHHHHHHC-----
T ss_pred cccccccCceeeecCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCC
Confidence 455778888854433333344333322233334456666666666666533 3444443
No 15
>KOG4349 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.51 E-value=1.3e+02 Score=23.35 Aligned_cols=38 Identities=13% Similarity=-0.117 Sum_probs=24.3
Q ss_pred hhhcccchHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHH
Q 029440 146 FWETRRADFGVSMGHHVATVILIVLSYIFRFALIQFCYCLLFF 188 (193)
Q Consensus 146 ~~e~~RkDf~em~~HHiiTi~Li~~SY~~nf~RiG~lVl~L~d 188 (193)
...++-+||+||-.|-+. ..+...=|..+|+-|+.++-
T Consensus 34 ~s~~~ln~f~Emwy~vFL-----Wal~Ss~fih~~A~ilalFT 71 (143)
T KOG4349|consen 34 LSGKYLNDFWEMWYSVFL-----WALLSSMFIHLGATILALFT 71 (143)
T ss_pred cCcchhccHHHHHHHHHH-----HHHHHHHHHHhhHHHHHHHH
Confidence 457777999999877432 33333345567777776653
No 16
>PF15007 CEP44: Centrosomal spindle body, CEP44
Probab=21.82 E-value=1.4e+02 Score=23.18 Aligned_cols=45 Identities=22% Similarity=0.369 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCCCcccchhhhhHHHHhHhhhhhhHHH
Q 029440 30 ALYFPSVRFFLEKFVFEKVAKRWIFGKGHHMLDFKTSERKKKIRKFNESAWKCV 83 (193)
Q Consensus 30 a~~~~~vR~~l~~~v~~pl~~~l~~~k~~~~~~~~~~~r~~~~~Kf~Es~w~~~ 83 (193)
+.++.++|+++..|= .++++.+.- ++. + --.+.=.||.|+.||+.
T Consensus 33 ~afLpil~~~L~~yS-~~va~~l~~-~g~-----e--L~~k~D~RF~E~vyk~L 77 (131)
T PF15007_consen 33 SAFLPILHYALLSYS-THVARLLVD-RGY-----E--LYGKNDLRFVESVYKLL 77 (131)
T ss_pred HHHHHHHHHHHHcCC-HHHHHHHHH-cCc-----h--hhcCChHHHHHHHHHHH
Confidence 457788999988753 566666531 110 0 00122259999999875
No 17
>PF07856 Orai-1: Mediator of CRAC channel activity; InterPro: IPR012446 This entry includes Drosophila Orai and human Orai1, Orai2 and Orai3. ORAI-1 GFP reporters are co-expressed with STIM-1 (ER CA(2+) sensors) in the gonad and intestine. The protein has four predicted transmembrane domains with a highly conserved region between TM2 ad TM3. This conserved domain is thought to function in channel regulation. ORAI1-related proteins are required for the production of the calcium channel, CRAC, along with STIM1-related proteins [].
Probab=20.44 E-value=4.6e+02 Score=21.13 Aligned_cols=18 Identities=22% Similarity=0.613 Sum_probs=15.0
Q ss_pred HHHhHhhhhhhHHHHHHH
Q 029440 70 KKIRKFNESAWKCVYFLT 87 (193)
Q Consensus 70 ~~~~Kf~Es~w~~~yy~~ 87 (193)
.+.++++|..|++.+...
T Consensus 100 ~~f~~~cE~~W~~s~~lG 117 (175)
T PF07856_consen 100 RRFHRYCELAWRFSTVLG 117 (175)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 567788999999998863
Done!