Query 029440
Match_columns 193
No_of_seqs 122 out of 682
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 21:19:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029440.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029440hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qkl_B SPAC19A8.12 protein, SP 28.9 48 0.0017 23.2 3.2 48 117-165 23-75 (95)
2 1b9u_A Protein (ATP synthase); 23.8 97 0.0033 16.8 4.2 26 27-52 8-33 (34)
3 1lql_A OSMC, osmotical inducib 13.7 1.6E+02 0.0054 21.9 3.5 30 14-43 60-89 (166)
4 4fp5_D LT-IIB, heat-labIle ent 12.8 25 0.00085 24.1 -1.2 25 104-128 42-66 (98)
5 1qb5_D Protein (heat labIle en 12.5 26 0.0009 24.0 -1.2 25 104-128 42-66 (99)
6 2a6t_A SPAC19A8.12; alpha/beta 11.1 2.1E+02 0.0071 23.0 3.7 47 117-163 28-78 (271)
7 2ql9_B Caspase-7; cysteine pro 8.5 2.3E+02 0.0078 19.1 2.6 26 133-159 31-57 (97)
8 1pyo_B Caspase-2; apoptosis, c 8.2 2.2E+02 0.0075 19.6 2.4 25 134-159 36-61 (105)
9 2dko_B Caspase-3; low barrier 8.0 2.4E+02 0.0084 19.3 2.6 25 134-159 38-63 (103)
10 1rh5_B Preprotein translocase 7.0 5.6E+02 0.019 16.8 4.0 33 147-187 27-59 (74)
No 1
>2qkl_B SPAC19A8.12 protein, SPBC3B9.21 protein; protein-protein complex, hydrolase; 2.33A {Schizosaccharomyces pombe} SCOP: a.242.1.1
Probab=28.89 E-value=48 Score=23.16 Aligned_cols=48 Identities=10% Similarity=0.086 Sum_probs=34.7
Q ss_pred CCCCccchhhHHHHHHHHHHHHHHHHHHHhh-----hcccchHHHHHHHHHHHH
Q 029440 117 WPDQKIKLKLKGVYMYAAGFYTYSIFALMFW-----ETRRADFGVSMGHHVATV 165 (193)
Q Consensus 117 yP~~~~~~~~~~yYl~q~afy~~~~~~~~~~-----e~~RkDf~em~~HHiiTi 165 (193)
=|....+...++++.+|-|+|...=+. .-. ...-|||.+++.+|+-.+
T Consensus 23 ~P~eel~s~eRl~FqiEeA~WfY~Df~-~~~np~Lp~~~lk~F~~~if~~cp~L 75 (95)
T 2qkl_B 23 LPAEEQSSVERLCFQIEQAHWFYEDFI-RAQNDQLPSLGLRVFSAKLFAHCPLL 75 (95)
T ss_dssp CCGGGSSCHHHHHHHHHHHHHHHHHTT-TTTCTTSCCCCHHHHHHHHHHHCTHH
T ss_pred CCHHHhhhHHHHHHHHHhheeehcccc-cccCCCCCCCcHHHHHHHHHHhCHHH
Confidence 687788888999999999999866443 111 122378999999886443
No 2
>1b9u_A Protein (ATP synthase); membrane protein, hydrolase; HET: GMA; NMR {Synthetic} SCOP: j.35.1.1
Probab=23.83 E-value=97 Score=16.83 Aligned_cols=26 Identities=19% Similarity=0.167 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 029440 27 PLFALYFPSVRFFLEKFVFEKVAKRW 52 (193)
Q Consensus 27 ~~~a~~~~~vR~~l~~~v~~pl~~~l 52 (193)
+..++.+.++=.++.+++++|+.+.+
T Consensus 8 ~~~~i~Flil~~~l~kf~~~Pi~~~l 33 (34)
T 1b9u_A 8 LGQAIAFVLFVLFCMKYVWPPLMAAI 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33455666777788999999998753
No 3
>1lql_A OSMC, osmotical inducible protein C like family; NEW fold, structural genomics, BSGC structure funded by NIH, protein structure initiative; 2.85A {Mycoplasma pneumoniae} SCOP: d.227.1.1
Probab=13.67 E-value=1.6e+02 Score=21.95 Aligned_cols=30 Identities=7% Similarity=-0.180 Sum_probs=25.5
Q ss_pred CCCCCCCCchhhHHHHHHHHHHHHHHHHHH
Q 029440 14 QESYPAYEDFAVLPLFALYFPSVRFFLEKF 43 (193)
Q Consensus 14 ~~~~p~~~Dl~~~~~~a~~~~~vR~~l~~~ 43 (193)
++.-|.|.|++.+...+|....++.++++.
T Consensus 60 ~~~g~nP~ELllaalaaC~~~~~~~~a~~~ 89 (166)
T 1lql_A 60 TAKGFGPLAALLSGLAACELATANLMAPAK 89 (166)
T ss_dssp TCSSCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 455689999999999999999999888764
No 4
>4fp5_D LT-IIB, heat-labIle enterotoxin IIB, B chain; B pentamer LT-IIB S74A mutant; 1.40A {Escherichia coli} PDB: 1qb5_D 1qcb_D 1tii_D 4fnf_D 4fo2_D
Probab=12.78 E-value=25 Score=24.11 Aligned_cols=25 Identities=16% Similarity=0.379 Sum_probs=18.9
Q ss_pred ChhhhhcCCCCCCCCCCccchhhHH
Q 029440 104 NTRCFWVGPGNQVWPDQKIKLKLKG 128 (193)
Q Consensus 104 ~~~~~w~~~~~~~yP~~~~~~~~~~ 128 (193)
++...|.=+|.++||+..++.+++-
T Consensus 42 ~tggvw~i~~~~dypdn~~s~e~rk 66 (98)
T 4fp5_D 42 STGGVWRISRAKDYPDNVMTAEMRK 66 (98)
T ss_dssp TTCCEEEECCCSSTTHHHHHHHHHH
T ss_pred cCCcEEEecCCCCCChhhhhHHHHH
Confidence 4556777778888999888877653
No 5
>1qb5_D Protein (heat labIle enterotoxin type IIB B- pentamer); 1.90A {Escherichia coli} SCOP: b.40.2.1 PDB: 1qcb_D 1tii_D
Probab=12.45 E-value=26 Score=24.04 Aligned_cols=25 Identities=16% Similarity=0.379 Sum_probs=18.9
Q ss_pred ChhhhhcCCCCCCCCCCccchhhHH
Q 029440 104 NTRCFWVGPGNQVWPDQKIKLKLKG 128 (193)
Q Consensus 104 ~~~~~w~~~~~~~yP~~~~~~~~~~ 128 (193)
++...|.=+|.++||+..++..++-
T Consensus 42 ~tggvw~i~~~~dypdn~~s~e~rk 66 (99)
T 1qb5_D 42 STGGVWRISRAKDYPDNVMTAEMRK 66 (99)
T ss_dssp TTSCEEEECCCSSTTHHHHHHHHHH
T ss_pred cCCcEEEecCCCCCChhhhhHHHHH
Confidence 4556777788888999888877653
No 6
>2a6t_A SPAC19A8.12; alpha/beta/alpha, RNA binding protein,hydrolase; 2.50A {Schizosaccharomyces pombe} SCOP: a.242.1.1 d.113.1.7 PDB: 2qkm_B*
Probab=11.13 E-value=2.1e+02 Score=23.03 Aligned_cols=47 Identities=11% Similarity=0.057 Sum_probs=35.5
Q ss_pred CCCCccchhhHHHHHHHHHHHHHHHHHHHh----hhcccchHHHHHHHHHH
Q 029440 117 WPDQKIKLKLKGVYMYAAGFYTYSIFALMF----WETRRADFGVSMGHHVA 163 (193)
Q Consensus 117 yP~~~~~~~~~~yYl~q~afy~~~~~~~~~----~e~~RkDf~em~~HHii 163 (193)
-|..+.....++++.+|-|+|.+.=+.... =+...++|...+.||.-
T Consensus 28 ~p~~~~~~~~~~~f~ie~a~wfy~d~~~~~~~~~p~~~~~~f~~~~f~~~~ 78 (271)
T 2a6t_A 28 LPAEEQSSVERLCFQIEQAHWFYEDFIRAQNDQLPSLGLRVFSAKLFAHCP 78 (271)
T ss_dssp SCGGGTTCHHHHHHHHHHHHHHHHHTHHHHCSSSCCCCHHHHHHHHHTTCH
T ss_pred CCHHHhccHHHHHHHHHHHHHHHHHhhhhcccCCCcccHHHHHHHHhhhhh
Confidence 777777888999999999999987553111 02356889988999876
No 7
>2ql9_B Caspase-7; cysteine protease, apoptosis, thiol protease, zymogen, hydro hydrolase inhibitor complex; HET: CIT; 2.14A {Homo sapiens} PDB: 2ql7_B* 2ql5_B* 2qlb_B* 2qlf_B 2qlj_B* 3edr_B 3ibc_B 3ibf_B 1i51_B
Probab=8.49 E-value=2.3e+02 Score=19.10 Aligned_cols=26 Identities=4% Similarity=0.181 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHhhh-cccchHHHHHH
Q 029440 133 AAGFYTYSIFALMFWE-TRRADFGVSMG 159 (193)
Q Consensus 133 q~afy~~~~~~~~~~e-~~RkDf~em~~ 159 (193)
+.++|++++.. .+.+ .++.|..+|+.
T Consensus 31 ~GSwfIq~Lc~-~l~~~~~~~dl~~ilt 57 (97)
T 2ql9_B 31 RGSWFVQALCS-ILEEHGKDLEIMQILT 57 (97)
T ss_dssp TEEHHHHHHHH-HHHHHTTTSCHHHHHH
T ss_pred CCCeeHHHHHH-HHHHhCCCCcHHHHHH
Confidence 46788999988 4433 57788888775
No 8
>1pyo_B Caspase-2; apoptosis, caspase, alpha-beta, thiol protease, hydrolase-HY inhibitor complex; 1.65A {Homo sapiens} SCOP: c.17.1.1 PDB: 2p2c_B 3r5j_B 3r6g_B 3r7b_B 3r7n_B 3r7s_B 3r6l_B
Probab=8.23 E-value=2.2e+02 Score=19.62 Aligned_cols=25 Identities=12% Similarity=0.174 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHhhh-cccchHHHHHH
Q 029440 134 AGFYTYSIFALMFWE-TRRADFGVSMG 159 (193)
Q Consensus 134 ~afy~~~~~~~~~~e-~~RkDf~em~~ 159 (193)
.++|++++.. .+.+ .++.|..+|+.
T Consensus 36 GSwFIq~Lc~-~l~~~~~~~dl~~ilt 61 (105)
T 1pyo_B 36 GSWYIEALAQ-VFSERACDMHVADMLV 61 (105)
T ss_dssp EEHHHHHHHH-HHHHHTTTSCHHHHHH
T ss_pred CCHHHHHHHH-HHHHHCCCCCHHHHHH
Confidence 5788899988 4544 57788888774
No 9
>2dko_B Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 2c2k_B* 2c2m_B* 2c2o_B* 2c1e_B* 2cdr_B* 2cnk_B* 2cnl_B* 2cnn_B* 2cno_B* 2cjy_B 1pau_B 1re1_B* 1rhk_B* 1rhm_B* 1rhq_B* 1rhr_B* 1rhu_B* 1rhj_B* 1i3o_B* 3edq_B ...
Probab=8.01 E-value=2.4e+02 Score=19.28 Aligned_cols=25 Identities=16% Similarity=0.325 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHhhh-cccchHHHHHH
Q 029440 134 AGFYTYSIFALMFWE-TRRADFGVSMG 159 (193)
Q Consensus 134 ~afy~~~~~~~~~~e-~~RkDf~em~~ 159 (193)
.++|++++.. .+.+ .++.|..+|+.
T Consensus 38 GSwfIq~Lc~-~l~~~~~~~dl~~ilT 63 (103)
T 2dko_B 38 GSWFIQSLCA-MLKQYADKLEFMHILT 63 (103)
T ss_dssp EEHHHHHHHH-HHHHHTTTSCHHHHHH
T ss_pred CCeeHHHHHH-HHHHhCCcccHHHHHH
Confidence 6788999988 4433 57788888874
No 10
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=6.98 E-value=5.6e+02 Score=16.76 Aligned_cols=33 Identities=6% Similarity=0.063 Sum_probs=21.3
Q ss_pred hhcccchHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHH
Q 029440 147 WETRRADFGVSMGHHVATVILIVLSYIFRFALIQFCYCLLF 187 (193)
Q Consensus 147 ~e~~RkDf~em~~HHiiTi~Li~~SY~~nf~RiG~lVl~L~ 187 (193)
..+.|++|....-...+-++++++ +|-+|-++|
T Consensus 27 ~KPdr~EF~~iak~~~iG~~imG~--------IGfiIkli~ 59 (74)
T 1rh5_B 27 KKPTKDEYLAVAKVTALGISLLGI--------IGYIIHVPA 59 (74)
T ss_dssp ECCCHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHH
Confidence 455567777777777777777765 555555444
Done!