Your job contains 1 sequence.
>029441
MKYRYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQ
MFDDLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVE
DLNTREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQEIEAAESWEESIDDIIAAFEK
RHRRKLLYSISFY
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 029441
(193 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2027789 - symbol:AT1G73820 species:3702 "Arabi... 781 1.3e-77 1
ZFIN|ZDB-GENE-040426-1689 - symbol:ssu72 "SSU72 RNA polym... 503 3.7e-48 1
UNIPROTKB|Q5ZJQ7 - symbol:SSU72 "RNA polymerase II subuni... 494 3.3e-47 1
UNIPROTKB|Q17QI2 - symbol:SSU72 "RNA polymerase II subuni... 494 3.3e-47 1
UNIPROTKB|E2QZ84 - symbol:SSU72 "Uncharacterized protein"... 494 3.3e-47 1
MGI|MGI:1916241 - symbol:Ssu72 "Ssu72 RNA polymerase II C... 494 3.3e-47 1
UNIPROTKB|Q9NP77 - symbol:SSU72 "RNA polymerase II subuni... 493 4.2e-47 1
RGD|1307854 - symbol:Ssu72 "SSU72 RNA polymerase II CTD p... 493 4.2e-47 1
UNIPROTKB|F1RJC9 - symbol:SSU72 "Uncharacterized protein"... 485 3.0e-46 1
UNIPROTKB|J9NXK3 - symbol:J9NXK3 "Uncharacterized protein... 467 2.4e-44 1
DICTYBASE|DDB_G0272871 - symbol:ssu72 "RNA polymerase II ... 460 1.3e-43 1
UNIPROTKB|J9P6L8 - symbol:LOC608299 "Uncharacterized prot... 441 1.4e-41 1
POMBASE|SPAC3G9.04 - symbol:ssu72 "phosphoric ester hydro... 437 3.6e-41 1
UNIPROTKB|A6NK39 - symbol:A6NK39 "Putative RNA polymerase... 436 4.6e-41 1
UNIPROTKB|E1BBD9 - symbol:LOC617499 "Uncharacterized prot... 429 2.6e-40 1
UNIPROTKB|A8MSY0 - symbol:A8MSY0 "Putative RNA polymerase... 428 3.3e-40 1
FB|FBgn0031054 - symbol:Ssu72 "Ssu72 ortholog" species:72... 415 7.8e-39 1
UNIPROTKB|A6NG73 - symbol:A6NG73 "Putative RNA polymerase... 413 1.3e-38 1
WB|WBGene00020480 - symbol:ssup-72 species:6239 "Caenorha... 413 1.3e-38 1
CGD|CAL0001446 - symbol:SSU72 species:5476 "Candida albic... 391 1.3e-38 2
UNIPROTKB|G1K158 - symbol:SSU72 "RNA polymerase II subuni... 412 1.6e-38 1
UNIPROTKB|F1RF63 - symbol:LOC100524945 "Uncharacterized p... 398 4.9e-37 1
UNIPROTKB|G5E5U5 - symbol:G5E5U5 "Uncharacterized protein... 391 2.7e-36 1
UNIPROTKB|E1BAB2 - symbol:E1BAB2 "Uncharacterized protein... 389 4.4e-36 1
UNIPROTKB|G3MZ63 - symbol:LOC788349 "Uncharacterized prot... 389 4.4e-36 1
SGD|S000005166 - symbol:SSU72 "Phosphatase and transcript... 389 4.4e-36 1
ASPGD|ASPL0000012150 - symbol:AN3810 species:162425 "Emer... 386 9.2e-36 1
UNIPROTKB|G3MZ34 - symbol:LOC788349 "Uncharacterized prot... 380 4.0e-35 1
UNIPROTKB|F1MS03 - symbol:F1MS03 "Uncharacterized protein... 362 3.2e-33 1
UNIPROTKB|F1RF65 - symbol:LOC100737070 "Uncharacterized p... 172 4.4e-13 1
>TAIR|locus:2027789 [details] [associations]
symbol:AT1G73820 species:3702 "Arabidopsis thaliana"
[GO:0004721 "phosphoprotein phosphatase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=ISM] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0009507 "chloroplast" evidence=IDA] [GO:0006470 "protein
dephosphorylation" evidence=RCA] InterPro:IPR006811 Pfam:PF04722
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0009507
GO:GO:0006397 GO:GO:0004721 EMBL:AC012679 eggNOG:COG5211
HOGENOM:HOG000183445 PANTHER:PTHR20383 KO:K15544 OMA:SMEAHNF
EMBL:BT005558 EMBL:AK119020 IPI:IPI00531322 PIR:F96765
RefSeq:NP_177523.1 UniGene:At.34950 ProteinModelPortal:Q9C9T0
SMR:Q9C9T0 STRING:Q9C9T0 PaxDb:Q9C9T0 PRIDE:Q9C9T0
EnsemblPlants:AT1G73820.1 GeneID:843718 KEGG:ath:AT1G73820
TAIR:At1g73820 InParanoid:Q9C9T0 PhylomeDB:Q9C9T0
ProtClustDB:CLSN2679894 ArrayExpress:Q9C9T0 Genevestigator:Q9C9T0
Uniprot:Q9C9T0
Length = 193
Score = 781 (280.0 bits), Expect = 1.3e-77, P = 1.3e-77
Identities = 146/193 (75%), Positives = 163/193 (84%)
Query: 1 MKYRYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQ 60
M++RYAMVCSSNQNRSMEAH LLKR G DV+SYGTG+HVKLPGPSLREPNVY+FGTPYKQ
Sbjct: 1 MRFRYAMVCSSNQNRSMEAHALLKRQGLDVASYGTGSHVKLPGPSLREPNVYDFGTPYKQ 60
Query: 61 MFDDLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVE 120
MFD+LRRKDPELYKRNGIL M+KRN+ VK APQRWQDNA DG FD+V TFEEKVFD+V+E
Sbjct: 61 MFDELRRKDPELYKRNGILQMIKRNLSVKLAPQRWQDNAGDGVFDVVMTFEEKVFDSVLE 120
Query: 121 DLNTREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQXXXXXXXXXXXXXXIIAAFEK 180
DLN REQ KT+LV+NLEVKDNHEEAAIGGRL +LCQ I+A FEK
Sbjct: 121 DLNNREQSLTKTILVMNLEVKDNHEEAAIGGRLALELCQEIEGNETWEDTIDDIVAGFEK 180
Query: 181 RHRRKLLYSISFY 193
+HRRKL+YSISFY
Sbjct: 181 QHRRKLVYSISFY 193
>ZFIN|ZDB-GENE-040426-1689 [details] [associations]
symbol:ssu72 "SSU72 RNA polymerase II CTD
phosphatase homolog (S. cerevisiae)" species:7955 "Danio rerio"
[GO:0004721 "phosphoprotein phosphatase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR006811
Pfam:PF04722 ZFIN:ZDB-GENE-040426-1689 GO:GO:0005634 GO:GO:0005737
GO:GO:0006397 GO:GO:0004721 HOGENOM:HOG000183445 HOVERGEN:HBG059831
PANTHER:PTHR20383 CTD:29101 KO:K15544 GeneTree:ENSGT00390000010165
EMBL:BC059504 IPI:IPI00491577 RefSeq:NP_957022.1 UniGene:Dr.76327
ProteinModelPortal:Q6PC19 PRIDE:Q6PC19 Ensembl:ENSDART00000041895
GeneID:393701 KEGG:dre:393701 InParanoid:Q6PC19 NextBio:20814704
Bgee:Q6PC19 Uniprot:Q6PC19
Length = 194
Score = 503 (182.1 bits), Expect = 3.7e-48, P = 3.7e-48
Identities = 98/190 (51%), Positives = 133/190 (70%)
Query: 4 RYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFD 63
R A+VCSSNQNRSMEAH +L + GFDV S+GTG HVKLPGP+ +PN+Y+F T Y+QM++
Sbjct: 7 RVAVVCSSNQNRSMEAHNILSKRGFDVRSFGTGTHVKLPGPAPDKPNIYDFKTTYEQMYN 66
Query: 64 DLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLN 123
DL RKD ELY +NGIL ML RN +K+ P+R+Q + D FD+V T EE+V+D V+EDLN
Sbjct: 67 DLVRKDKELYTQNGILHMLDRNKRIKSRPERFQ-SCRD-QFDLVITCEERVYDQVLEDLN 124
Query: 124 TREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQXXXXXXXXXXXXXXIIAAFEKRHR 183
+REQ + V VIN++++DNHEEA +G L +LCQ ++ FE++
Sbjct: 125 SREQESFQPVHVINVDIQDNHEEATLGAFLICELCQCIQHTDDMENEMDELLQEFEEKSH 184
Query: 184 RKLLYSISFY 193
R L+S+ FY
Sbjct: 185 RPFLHSVCFY 194
>UNIPROTKB|Q5ZJQ7 [details] [associations]
symbol:SSU72 "RNA polymerase II subunit A C-terminal domain
phosphatase SSU72" species:9031 "Gallus gallus" [GO:0004721
"phosphoprotein phosphatase activity" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR006811
Pfam:PF04722 GO:GO:0005634 GO:GO:0005737 GO:GO:0006397
GO:GO:0004721 eggNOG:COG5211 HOGENOM:HOG000183445
HOVERGEN:HBG059831 PANTHER:PTHR20383 CTD:29101 KO:K15544
OrthoDB:EOG49PB0D EMBL:AJ720377 IPI:IPI00577210
RefSeq:NP_001007876.1 UniGene:Gga.9388 ProteinModelPortal:Q5ZJQ7
STRING:Q5ZJQ7 Ensembl:ENSGALT00000002258 GeneID:419410
KEGG:gga:419410 GeneTree:ENSGT00390000010165 InParanoid:Q5ZJQ7
OMA:SMEAHNF NextBio:20822469 Uniprot:Q5ZJQ7
Length = 194
Score = 494 (179.0 bits), Expect = 3.3e-47, P = 3.3e-47
Identities = 98/190 (51%), Positives = 130/190 (68%)
Query: 4 RYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFD 63
R A+VCSSNQNRSMEAH +L + GF V S+GTG HVKLPGP+ +PNVY+F T Y QM++
Sbjct: 7 RVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQMYN 66
Query: 64 DLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLN 123
DL RKD ELY +NGIL ML RN +K P+R+Q N D FD++ T EE+V+D VVEDLN
Sbjct: 67 DLLRKDKELYTQNGILHMLDRNKRIKPRPERFQ-NCKD-VFDLILTCEERVYDQVVEDLN 124
Query: 124 TREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQXXXXXXXXXXXXXXIIAAFEKRHR 183
+REQ + V VIN++++DNHEEA +G L +LCQ ++ FE++
Sbjct: 125 SREQETCQPVHVINVDIQDNHEEATLGAFLICELCQCIQHTEDMENEIDELLQEFEEKSG 184
Query: 184 RKLLYSISFY 193
R L+++ FY
Sbjct: 185 RTFLHTVCFY 194
>UNIPROTKB|Q17QI2 [details] [associations]
symbol:SSU72 "RNA polymerase II subunit A C-terminal domain
phosphatase SSU72" species:9913 "Bos taurus" [GO:0008420 "CTD
phosphatase activity" evidence=ISS] [GO:0070940 "dephosphorylation
of RNA polymerase II C-terminal domain" evidence=ISS] [GO:0006378
"mRNA polyadenylation" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR006811 Pfam:PF04722 GO:GO:0005634 GO:GO:0005737
GO:GO:0006378 GO:GO:0008420 GO:GO:0070940 eggNOG:COG5211
HOGENOM:HOG000183445 HOVERGEN:HBG059831 PANTHER:PTHR20383
EMBL:BC118344 IPI:IPI00712432 RefSeq:NP_001069817.1
UniGene:Bt.59246 ProteinModelPortal:Q17QI2 GeneID:614837
KEGG:bta:614837 CTD:29101 InParanoid:Q17QI2 KO:K15544
OrthoDB:EOG49PB0D NextBio:20899312 Uniprot:Q17QI2
Length = 194
Score = 494 (179.0 bits), Expect = 3.3e-47, P = 3.3e-47
Identities = 98/190 (51%), Positives = 130/190 (68%)
Query: 4 RYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFD 63
R A+VCSSNQNRSMEAH +L + GF V S+GTG HVKLPGP+ +PNVY+F T Y QM++
Sbjct: 7 RVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQMYN 66
Query: 64 DLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLN 123
DL RKD ELY +NGIL ML RN +K P+R+Q N D FD++ T EE+V+D VVEDLN
Sbjct: 67 DLLRKDKELYTQNGILHMLDRNKRIKPRPERFQ-NCKD-LFDLILTCEERVYDQVVEDLN 124
Query: 124 TREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQXXXXXXXXXXXXXXIIAAFEKRHR 183
+REQ + V VIN++++DNHEEA +G L +LCQ ++ FE++
Sbjct: 125 SREQETCQPVHVINVDIQDNHEEATLGAFLICELCQCIQHTEDMENEIDELLQEFEEKSG 184
Query: 184 RKLLYSISFY 193
R L+++ FY
Sbjct: 185 RTFLHTVCFY 194
>UNIPROTKB|E2QZ84 [details] [associations]
symbol:SSU72 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0004721 "phosphoprotein
phosphatase activity" evidence=IEA] InterPro:IPR006811 Pfam:PF04722
GO:GO:0005634 GO:GO:0006397 GO:GO:0004721 PANTHER:PTHR20383
CTD:29101 KO:K15544 GeneTree:ENSGT00390000010165 OMA:SMEAHNF
EMBL:AAEX03003848 EMBL:AAEX03003849 RefSeq:NP_001239254.1
UniGene:Cfa.11042 ProteinModelPortal:E2QZ84
Ensembl:ENSCAFT00000030566 GeneID:479567 KEGG:cfa:479567
NextBio:20854735 Uniprot:E2QZ84
Length = 194
Score = 494 (179.0 bits), Expect = 3.3e-47, P = 3.3e-47
Identities = 98/190 (51%), Positives = 130/190 (68%)
Query: 4 RYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFD 63
R A+VCSSNQNRSMEAH +L + GF V S+GTG HVKLPGP+ +PNVY+F T Y QM++
Sbjct: 7 RVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQMYN 66
Query: 64 DLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLN 123
DL RKD ELY +NGIL ML RN +K P+R+Q N D FD++ T EE+V+D VVEDLN
Sbjct: 67 DLLRKDKELYTQNGILHMLDRNKRIKPRPERFQ-NCRD-LFDLILTCEERVYDQVVEDLN 124
Query: 124 TREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQXXXXXXXXXXXXXXIIAAFEKRHR 183
+REQ + V VIN++++DNHEEA +G L +LCQ ++ FE++
Sbjct: 125 SREQETCQPVHVINVDIQDNHEEATLGAFLICELCQCIQHTEDMENEIDELLQEFEEKSG 184
Query: 184 RKLLYSISFY 193
R L+++ FY
Sbjct: 185 RAFLHTVCFY 194
>MGI|MGI:1916241 [details] [associations]
symbol:Ssu72 "Ssu72 RNA polymerase II CTD phosphatase
homolog (yeast)" species:10090 "Mus musculus" [GO:0004721
"phosphoprotein phosphatase activity" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006378
"mRNA polyadenylation" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008420 "CTD phosphatase activity" evidence=ISO]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0070940
"dephosphorylation of RNA polymerase II C-terminal domain"
evidence=ISO] InterPro:IPR006811 Pfam:PF04722 MGI:MGI:1916241
GO:GO:0005634 GO:GO:0005737 GO:GO:0006378 EMBL:AL670236
GO:GO:0008420 GO:GO:0070940 eggNOG:COG5211 HOGENOM:HOG000183445
HOVERGEN:HBG059831 PANTHER:PTHR20383 CTD:29101 KO:K15544
OrthoDB:EOG49PB0D GeneTree:ENSGT00390000010165 OMA:SMEAHNF
EMBL:AK005220 EMBL:AK019168 EMBL:AK148783 EMBL:BC016544
IPI:IPI00318564 IPI:IPI00460332 RefSeq:NP_081175.2
UniGene:Mm.294770 UniGene:Mm.483261 ProteinModelPortal:Q9CY97
SMR:Q9CY97 STRING:Q9CY97 PhosphoSite:Q9CY97 PaxDb:Q9CY97
PRIDE:Q9CY97 Ensembl:ENSMUST00000030905 Ensembl:ENSMUST00000105595
GeneID:68991 KEGG:mmu:68991 UCSC:uc008wek.2 UCSC:uc008wel.2
InParanoid:Q9CY97 NextBio:328359 Bgee:Q9CY97 Genevestigator:Q9CY97
Uniprot:Q9CY97
Length = 194
Score = 494 (179.0 bits), Expect = 3.3e-47, P = 3.3e-47
Identities = 97/190 (51%), Positives = 130/190 (68%)
Query: 4 RYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFD 63
R A+VCSSNQNRSMEAH +L + GF V S+GTG HVKLPGP+ +PNVY+F T Y QM++
Sbjct: 7 RVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQMYN 66
Query: 64 DLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLN 123
DL RKD ELY +NGIL ML RN +K P+R+Q N D FD++ T EE+V+D VVEDLN
Sbjct: 67 DLLRKDKELYTQNGILHMLDRNKRIKPRPERFQ-NCTD-LFDLILTCEERVYDQVVEDLN 124
Query: 124 TREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQXXXXXXXXXXXXXXIIAAFEKRHR 183
+REQ + V V+N++++DNHEEA +G L +LCQ ++ FE++
Sbjct: 125 SREQETCQPVHVVNVDIQDNHEEATLGAFLICELCQCIQHTEDMENEIDELLQEFEEKSG 184
Query: 184 RKLLYSISFY 193
R L+++ FY
Sbjct: 185 RAFLHTVCFY 194
>UNIPROTKB|Q9NP77 [details] [associations]
symbol:SSU72 "RNA polymerase II subunit A C-terminal domain
phosphatase SSU72" species:9606 "Homo sapiens" [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0070940 "dephosphorylation of RNA polymerase II C-terminal
domain" evidence=IDA] [GO:0008420 "CTD phosphatase activity"
evidence=IDA] [GO:0006378 "mRNA polyadenylation" evidence=IMP]
InterPro:IPR006811 Pfam:PF04722 GO:GO:0005634 GO:GO:0005737
GO:GO:0006378 EMBL:CH471183 EMBL:AL645728 GO:GO:0008420
GO:GO:0070940 eggNOG:COG5211 HOGENOM:HOG000183445
HOVERGEN:HBG059831 PANTHER:PTHR20383 CTD:29101 KO:K15544
OrthoDB:EOG49PB0D OMA:SMEAHNF EMBL:AF161530 EMBL:AF277178
EMBL:AJ276409 EMBL:AK001809 EMBL:AK023110 EMBL:AK291324
EMBL:BC008070 IPI:IPI00023556 IPI:IPI00073512 RefSeq:NP_054907.1
UniGene:Hs.30026 UniGene:Hs.549751 PDB:3O2Q PDB:3O2S PDB:4H3H
PDB:4H3K PDBsum:3O2Q PDBsum:3O2S PDBsum:4H3H PDBsum:4H3K
ProteinModelPortal:Q9NP77 SMR:Q9NP77 DIP:DIP-53666N IntAct:Q9NP77
STRING:Q9NP77 PhosphoSite:Q9NP77 DMDM:74752877 PaxDb:Q9NP77
PRIDE:Q9NP77 DNASU:29101 Ensembl:ENST00000291386
Ensembl:ENST00000359060 GeneID:29101 KEGG:hsa:29101 UCSC:uc001agd.3
UCSC:uc001age.1 GeneCards:GC01M001477 HGNC:HGNC:25016
neXtProt:NX_Q9NP77 PharmGKB:PA142670866 InParanoid:Q9NP77
PhylomeDB:Q9NP77 ChiTaRS:SSU72 EvolutionaryTrace:Q9NP77
GenomeRNAi:29101 NextBio:52137 ArrayExpress:Q9NP77 Bgee:Q9NP77
CleanEx:HS_SSU72 Genevestigator:Q9NP77 Uniprot:Q9NP77
Length = 194
Score = 493 (178.6 bits), Expect = 4.2e-47, P = 4.2e-47
Identities = 97/190 (51%), Positives = 130/190 (68%)
Query: 4 RYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFD 63
R A+VCSSNQNRSMEAH +L + GF V S+GTG HVKLPGP+ +PNVY+F T Y QM++
Sbjct: 7 RVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQMYN 66
Query: 64 DLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLN 123
DL RKD ELY +NGIL ML RN +K P+R+Q N D FD++ T EE+V+D VVEDLN
Sbjct: 67 DLLRKDKELYTQNGILHMLDRNKRIKPRPERFQ-NCKD-LFDLILTCEERVYDQVVEDLN 124
Query: 124 TREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQXXXXXXXXXXXXXXIIAAFEKRHR 183
+REQ + V V+N++++DNHEEA +G L +LCQ ++ FE++
Sbjct: 125 SREQETCQPVHVVNVDIQDNHEEATLGAFLICELCQCIQHTEDMENEIDELLQEFEEKSG 184
Query: 184 RKLLYSISFY 193
R L+++ FY
Sbjct: 185 RTFLHTVCFY 194
>RGD|1307854 [details] [associations]
symbol:Ssu72 "SSU72 RNA polymerase II CTD phosphatase homolog
(S. cerevisiae)" species:10116 "Rattus norvegicus" [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006378 "mRNA polyadenylation" evidence=ISO;ISS] [GO:0008420
"CTD phosphatase activity" evidence=ISO;ISS] [GO:0070940
"dephosphorylation of RNA polymerase II C-terminal domain"
evidence=ISO;ISS] InterPro:IPR006811 Pfam:PF04722 RGD:1307854
GO:GO:0005634 GO:GO:0005737 GO:GO:0006378 GO:GO:0008420
GO:GO:0070940 eggNOG:COG5211 HOGENOM:HOG000183445
HOVERGEN:HBG059831 PANTHER:PTHR20383 CTD:29101 KO:K15544
OrthoDB:EOG49PB0D GeneTree:ENSGT00390000010165 OMA:SMEAHNF
EMBL:BC099142 IPI:IPI00190022 RefSeq:NP_001020828.1
UniGene:Rn.103950 ProteinModelPortal:Q4KLK9 STRING:Q4KLK9
PRIDE:Q4KLK9 Ensembl:ENSRNOT00000024349 GeneID:298681
KEGG:rno:298681 InParanoid:Q4KLK9 NextBio:644160
Genevestigator:Q4KLK9 Uniprot:Q4KLK9
Length = 194
Score = 493 (178.6 bits), Expect = 4.2e-47, P = 4.2e-47
Identities = 97/190 (51%), Positives = 130/190 (68%)
Query: 4 RYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFD 63
R A+VCSSNQNRSMEAH +L + GF V S+GTG HVKLPGP+ +PNVY+F T Y QM++
Sbjct: 7 RVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQMYN 66
Query: 64 DLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLN 123
DL RKD ELY +NGIL ML RN +K P+R+Q N D FD++ T EE+V+D VVEDLN
Sbjct: 67 DLLRKDKELYTQNGILHMLDRNKRIKPRPERFQ-NCKD-LFDLILTCEERVYDQVVEDLN 124
Query: 124 TREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQXXXXXXXXXXXXXXIIAAFEKRHR 183
+REQ + V V+N++++DNHEEA +G L +LCQ ++ FE++
Sbjct: 125 SREQETCQPVHVVNVDIQDNHEEATLGAFLICELCQCIQHTEDMENEIDELLQEFEEKSG 184
Query: 184 RKLLYSISFY 193
R L+++ FY
Sbjct: 185 RAFLHTVCFY 194
>UNIPROTKB|F1RJC9 [details] [associations]
symbol:SSU72 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006397 "mRNA processing" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0004721 "phosphoprotein phosphatase
activity" evidence=IEA] InterPro:IPR006811 Pfam:PF04722
GO:GO:0005634 GO:GO:0006397 GO:GO:0004721 PANTHER:PTHR20383
GeneTree:ENSGT00390000010165 OMA:SMEAHNF EMBL:FP102593
Ensembl:ENSSSCT00000003717 Uniprot:F1RJC9
Length = 195
Score = 485 (175.8 bits), Expect = 3.0e-46, P = 3.0e-46
Identities = 98/191 (51%), Positives = 130/191 (68%)
Query: 4 RYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFD 63
R A+VCSSNQNRSMEAH +L + GF V S+GTG HVKLPGP+ +PNVY+F T Y QM++
Sbjct: 7 RVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFRTTYDQMYN 66
Query: 64 DLRRKDPEL-YKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDL 122
DL RKD EL Y +NGIL ML RN +K P+R+Q N D FD++ T EE+V+D VVEDL
Sbjct: 67 DLLRKDKELHYTQNGILHMLDRNKRIKPRPERFQ-NCKD-LFDLILTCEERVYDQVVEDL 124
Query: 123 NTREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQXXXXXXXXXXXXXXIIAAFEKRH 182
N+REQ + V VIN++++DNHEEA +G L +LCQ ++ FE++
Sbjct: 125 NSREQETCQPVHVINVDIQDNHEEATLGAFLICELCQCIQHTEDMENEIDELLQEFEEKS 184
Query: 183 RRKLLYSISFY 193
R L+++ FY
Sbjct: 185 GRAFLHTVCFY 195
>UNIPROTKB|J9NXK3 [details] [associations]
symbol:J9NXK3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0004721 "phosphoprotein
phosphatase activity" evidence=IEA] InterPro:IPR006811 Pfam:PF04722
GO:GO:0005634 GO:GO:0006397 GO:GO:0004721 PANTHER:PTHR20383
GeneTree:ENSGT00390000010165 EMBL:AAEX03026291
Ensembl:ENSCAFT00000022394 OMA:EGERTHT Uniprot:J9NXK3
Length = 194
Score = 467 (169.5 bits), Expect = 2.4e-44, P = 2.4e-44
Identities = 94/190 (49%), Positives = 127/190 (66%)
Query: 4 RYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFD 63
+ A+VCSSNQNRSMEAH +L + GF V S+GTG HVKLPGP+ +PNVY+F T Y QM++
Sbjct: 7 KVAVVCSSNQNRSMEAHNILNKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQMYN 66
Query: 64 DLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLN 123
DL RKD +LY +NGIL ML RN +K P+R+Q N D FD++ T EE+V+D VVEDL
Sbjct: 67 DLLRKDKDLYTQNGILHMLDRNKRIKPHPERFQ-NCRD-VFDLIVTCEERVYDQVVEDLT 124
Query: 124 TREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQXXXXXXXXXXXXXXIIAAFEKRHR 183
REQ + V VIN++++DN EEA +G L +LCQ ++ FE++
Sbjct: 125 LREQETCQPVHVINVDIQDNLEEATLGAFLICELCQCIQHTDDMENDIDELLQEFEEKSG 184
Query: 184 RKLLYSISFY 193
R L+++ FY
Sbjct: 185 RAFLHTVCFY 194
>DICTYBASE|DDB_G0272871 [details] [associations]
symbol:ssu72 "RNA polymerase II subunit A C-terminal
domain phosphatase" species:44689 "Dictyostelium discoideum"
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0004721 "phosphoprotein phosphatase activity"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR006811 Pfam:PF04722 dictyBase:DDB_G0272871
GO:GO:0005634 GO:GO:0006397 GenomeReviews:CM000151_GR GO:GO:0004721
EMBL:AAFI02000008 eggNOG:COG5211 PANTHER:PTHR20383 KO:K15544
OMA:SMEAHNF RefSeq:XP_644923.1 ProteinModelPortal:Q558Z3
STRING:Q558Z3 EnsemblProtists:DDB0202722 GeneID:8618602
KEGG:ddi:DDB_G0272871 ProtClustDB:CLSZ2431262 Uniprot:Q558Z3
Length = 214
Score = 460 (167.0 bits), Expect = 1.3e-43, P = 1.3e-43
Identities = 86/193 (44%), Positives = 130/193 (67%)
Query: 4 RYAMVCSSNQNRSMEAHYLLKRHGF-DVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMF 62
R AMVC+SNQNRS+EAH+L ++GF ++ S+GT AH KLPGPS+ +PN++ FGTPY++++
Sbjct: 23 RIAMVCASNQNRSLEAHHLFVKNGFKNIRSFGTSAHCKLPGPSIHQPNIFSFGTPYQEIY 82
Query: 63 DDLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDL 122
L+ +D ELY RNG+L ML+RNI VK AP++WQ+ F+IV+TF+++V+D V+EDL
Sbjct: 83 TSLKNQDQELYIRNGLLNMLERNISVKLAPEKWQEEQ-QSKFEIVYTFDQRVYDAVIEDL 141
Query: 123 NTRE--QPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQXXXXXXXXXXXXXXIIAAFEK 180
R+ ++ V +INL+VKD HEEA G + ++ I+ F K
Sbjct: 142 LQRDVSSSLLQPVHIINLQVKDTHEEAVGGAQHALEITSIIEKTLNWEEKLDQILEDFYK 201
Query: 181 RHRRKLLYSISFY 193
+ R+ L+++ FY
Sbjct: 202 QTSRQFLHTLMFY 214
>UNIPROTKB|J9P6L8 [details] [associations]
symbol:LOC608299 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0004721
"phosphoprotein phosphatase activity" evidence=IEA]
InterPro:IPR006811 Pfam:PF04722 GO:GO:0005634 GO:GO:0006397
GO:GO:0004721 PANTHER:PTHR20383 GeneTree:ENSGT00390000010165
EMBL:AAEX03013447 Ensembl:ENSCAFT00000007129 Uniprot:J9P6L8
Length = 182
Score = 441 (160.3 bits), Expect = 1.4e-41, P = 1.4e-41
Identities = 92/188 (48%), Positives = 120/188 (63%)
Query: 6 AMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFDDL 65
A+VCSS QNRSME H +L + GF V S+GTG HVKLPGP+ PNVY+F T Y DL
Sbjct: 2 AVVCSSTQNRSMEVHKILNKRGFSVRSFGTGTHVKLPGPAPDRPNVYDFKTTY-----DL 56
Query: 66 RRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLNTR 125
R D ELY +NGIL ML +N +K P+R+Q N D FD++ T EE+V+D VVEDLN+R
Sbjct: 57 LRTDKELYTQNGILHMLDKNKRIKPRPERFQ-NCRD-LFDLILTCEERVYDQVVEDLNSR 114
Query: 126 EQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQXXXXXXXXXXXXXXIIAAFEKRHRRK 185
EQ + V VIN++++DNHEEA +G L LCQ ++ FE++ R
Sbjct: 115 EQETCQPVHVINVDIQDNHEEATLGAFLICGLCQCIQHTEDMENEIDELLQEFEEKSGRA 174
Query: 186 LLYSISFY 193
L+S+ FY
Sbjct: 175 FLHSVGFY 182
>POMBASE|SPAC3G9.04 [details] [associations]
symbol:ssu72 "phosphoric ester hydrolase Ssu72
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0004721
"phosphoprotein phosphatase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0005847 "mRNA cleavage and polyadenylation specificity factor
complex" evidence=IDA] [GO:0006352 "DNA-dependent transcription,
initiation" evidence=ISO] [GO:0006369 "termination of RNA
polymerase II transcription" evidence=ISO] [GO:0042578 "phosphoric
ester hydrolase activity" evidence=ISO] InterPro:IPR006811
Pfam:PF04722 PomBase:SPAC3G9.04 GO:GO:0005829 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0006397 GO:GO:0006352 GO:GO:0004721
GO:GO:0005847 GO:GO:0006369 GO:GO:0042578 eggNOG:COG5211
HOGENOM:HOG000183445 PANTHER:PTHR20383 KO:K15544 OMA:SMEAHNF
PIR:T11640 RefSeq:NP_594076.1 ProteinModelPortal:O42868
STRING:O42868 EnsemblFungi:SPAC3G9.04.1 GeneID:2543452
KEGG:spo:SPAC3G9.04 OrthoDB:EOG4DFSXT NextBio:20804465
Uniprot:O42868
Length = 197
Score = 437 (158.9 bits), Expect = 3.6e-41, P = 3.6e-41
Identities = 83/190 (43%), Positives = 123/190 (64%)
Query: 6 AMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFDDL 65
+++C+SNQNRSMEAH +LK G+ V S+GTG+ V+LPGPS+ +PN+Y+FG PY +++ +L
Sbjct: 10 SVICASNQNRSMEAHNVLKNAGYQVDSFGTGSAVRLPGPSIDKPNIYQFGYPYDEIYKEL 69
Query: 66 RRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLNTR 125
+D LY NG+L ML RN +K AP RWQD D ++IV T EE+ +D + EDL R
Sbjct: 70 EAQDSRLYTANGLLKMLDRNRRIKRAPCRWQDQ--DSIYNIVITCEERCYDAICEDLYRR 127
Query: 126 EQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQXXXXXXXXXXXXX-XIIAAFEKRHRR 184
+ + V +IN+++KDNHEEA++GG+ DL I+A F+ H +
Sbjct: 128 GETLNRPVYLINVDIKDNHEEASVGGKAILDLVNKLTEAQDKLEELFPSIMADFQSNHPK 187
Query: 185 -KLLYSISFY 193
+LY+I F+
Sbjct: 188 LPVLYTIHFF 197
>UNIPROTKB|A6NK39 [details] [associations]
symbol:A6NK39 "Putative RNA polymerase II subunit A
C-terminal domain phosphatase SSU72-like protein 1" species:9606
"Homo sapiens" [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0004721 "phosphoprotein phosphatase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR006811 Pfam:PF04722 GO:GO:0005634
GO:GO:0005737 GO:GO:0006397 GO:GO:0004721 EMBL:AC018793
IPI:IPI00179849 ProteinModelPortal:A6NK39 SMR:A6NK39 PRIDE:A6NK39
neXtProt:NX_A6NK39 eggNOG:COG5211 HOGENOM:HOG000183445
HOVERGEN:HBG059831 InParanoid:A6NK39 OrthoDB:EOG4D26R1
PhylomeDB:A6NK39 Genevestigator:A6NK39 PANTHER:PTHR20383
Uniprot:A6NK39
Length = 194
Score = 436 (158.5 bits), Expect = 4.6e-41, P = 4.6e-41
Identities = 88/190 (46%), Positives = 123/190 (64%)
Query: 4 RYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFD 63
R A+VC SN NRSMEAH +L+R G V S+GT +HV+LPGP P VY+F T YKQM++
Sbjct: 7 RVAVVCVSNVNRSMEAHSILRRKGLSVRSFGTESHVRLPGPRPNRPVVYDFATTYKQMYN 66
Query: 64 DLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLN 123
DL RKD E Y RNGIL +L RN +K P+R+Q+ D SFD++FT EE V+DTVVEDL
Sbjct: 67 DLLRKDRERYTRNGILHILGRNERIKPGPERFQE-CTD-SFDVIFTCEESVYDTVVEDLC 124
Query: 124 TREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQXXXXXXXXXXXXXXIIAAFEKRHR 183
+REQ + V VIN++++D E+A +G L ++CQ ++ E++
Sbjct: 125 SREQQTFQPVHVINMDIQDTLEDATLGAFLICEICQCLQQSDDIEDNLEELLLQMEEKAG 184
Query: 184 RKLLYSISFY 193
+ L+++ FY
Sbjct: 185 KSFLHTVCFY 194
>UNIPROTKB|E1BBD9 [details] [associations]
symbol:LOC617499 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0004721 "phosphoprotein
phosphatase activity" evidence=IEA] InterPro:IPR006811 Pfam:PF04722
GO:GO:0005634 GO:GO:0006397 GO:GO:0004721 PANTHER:PTHR20383
GeneTree:ENSGT00390000010165 EMBL:DAAA02067802 IPI:IPI00703537
Ensembl:ENSBTAT00000025591 Uniprot:E1BBD9
Length = 192
Score = 429 (156.1 bits), Expect = 2.6e-40, P = 2.6e-40
Identities = 86/190 (45%), Positives = 122/190 (64%)
Query: 4 RYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFD 63
R A+VCSSNQNRSMEAH +L + GF + S+GTG ++KLPGP+ PNVY+F Y ++
Sbjct: 7 RLAVVCSSNQNRSMEAHNILSKRGFSILSFGTGTNMKLPGPARDRPNVYDFRAMYDDVYK 66
Query: 64 DLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLN 123
DL RKD E Y +NG+L ML+RNI K P+R+Q+ FD++ T EE+V+D VVED+N
Sbjct: 67 DLLRKDKERYMQNGVLRMLERNI--KPRPERFQE--CKDLFDLILTCEERVYDQVVEDMN 122
Query: 124 TREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQXXXXXXXXXXXXXXIIAAFEKRHR 183
+ EQ + V VIN+ + D ++EA +G L DLCQ ++ AFE++
Sbjct: 123 SGEQETCQPVHVINVNILDTNKEATLGAFLICDLCQCVQLMGDMEDRIGELLQAFEEKSG 182
Query: 184 RKLLYSISFY 193
R L+++ FY
Sbjct: 183 RSFLHTVCFY 192
>UNIPROTKB|A8MSY0 [details] [associations]
symbol:A8MSY0 "Putative RNA polymerase II subunit A
C-terminal domain phosphatase SSU72-like protein 2" species:9606
"Homo sapiens" [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0004721 "phosphoprotein phosphatase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR006811 Pfam:PF04722 GO:GO:0005634
GO:GO:0005737 GO:GO:0006397 GO:GO:0004721 EMBL:AC018793
eggNOG:COG5211 HOGENOM:HOG000183445 HOVERGEN:HBG059831
PANTHER:PTHR20383 IPI:IPI00399286 ProteinModelPortal:A8MSY0
SMR:A8MSY0 PhosphoSite:A8MSY0 PRIDE:A8MSY0 neXtProt:NX_A8MSY0
InParanoid:A8MSY0 OrthoDB:EOG42V8HC PhylomeDB:A8MSY0
Genevestigator:A8MSY0 Uniprot:A8MSY0
Length = 194
Score = 428 (155.7 bits), Expect = 3.3e-40, P = 3.3e-40
Identities = 86/190 (45%), Positives = 122/190 (64%)
Query: 4 RYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFD 63
R A+VC SN NRSMEAH +L++ G V S+GT +HV+LPGP P VY+F T YK+M++
Sbjct: 7 RVAVVCVSNVNRSMEAHSILRKKGLSVRSFGTESHVRLPGPRPNRPVVYDFATTYKEMYN 66
Query: 64 DLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLN 123
DL RKD E Y RNGIL +L RN +K P+R+Q+ D FD++FT EE V+DTVVEDL
Sbjct: 67 DLLRKDRECYTRNGILHILGRNERIKPGPERFQE-CTD-FFDVIFTCEESVYDTVVEDLC 124
Query: 124 TREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQXXXXXXXXXXXXXXIIAAFEKRHR 183
+REQ + V VIN+E++D E+A +G L ++CQ ++ E++
Sbjct: 125 SREQQTFQPVHVINMEIQDTLEDATLGAFLICEICQCLQQSDDMEDNLEELLLQMEEKAG 184
Query: 184 RKLLYSISFY 193
+ L+++ FY
Sbjct: 185 KSFLHTVCFY 194
>FB|FBgn0031054 [details] [associations]
symbol:Ssu72 "Ssu72 ortholog" species:7227 "Drosophila
melanogaster" [GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0016791 "phosphatase activity"
evidence=IDA] [GO:0070940 "dephosphorylation of RNA polymerase II
C-terminal domain" evidence=IDA] [GO:0008420 "CTD phosphatase
activity" evidence=IDA] InterPro:IPR006811 Pfam:PF04722
GO:GO:0005634 EMBL:AE014298 GO:GO:0006397 GO:GO:0008420
GO:GO:0070940 eggNOG:COG5211 PANTHER:PTHR20383 KO:K15544
GeneTree:ENSGT00390000010165 OMA:SMEAHNF EMBL:AY060426
RefSeq:NP_608342.1 UniGene:Dm.3992 PDB:3FDF PDB:3FMV PDB:3OMW
PDB:3OMX PDB:3P9Y PDBsum:3FDF PDBsum:3FMV PDBsum:3OMW PDBsum:3OMX
PDBsum:3P9Y SMR:Q9VWE4 STRING:Q9VWE4 EnsemblMetazoa:FBtr0074747
GeneID:32973 KEGG:dme:Dmel_CG14216 UCSC:CG14216-RA
FlyBase:FBgn0031054 InParanoid:Q9VWE4 OrthoDB:EOG412JNM
EvolutionaryTrace:Q9VWE4 GenomeRNAi:32973 NextBio:781308
Uniprot:Q9VWE4
Length = 195
Score = 415 (151.1 bits), Expect = 7.8e-39, P = 7.8e-39
Identities = 85/192 (44%), Positives = 117/192 (60%)
Query: 2 KYRYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQM 61
K A+VCSSN NRSMEAH L + GF+V SYGTG VKLPG + +PNVYEFGT Y+ +
Sbjct: 6 KLAVAVVCSSNMNRSMEAHNFLAKKGFNVRSYGTGERVKLPGMAFDKPNVYEFGTKYEDI 65
Query: 62 FDDLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVED 121
+ DL KD E Y +NG+L ML RN +K P+R+QD FDI+ T EE+V+D VV
Sbjct: 66 YRDLESKDKEFYTQNGLLHMLDRNRRIKKCPERFQDTK--EQFDIIVTVEERVYDLVVMH 123
Query: 122 LNTREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQXXXXXXXXXXXXXXIIAAFEKR 181
+ + E + V V+N++V DN E+A +G + D+ +I FE+R
Sbjct: 124 MESMESVDNRPVHVLNVDVVDNAEDALMGAFVITDMINMMAKSTDLDNDIDELIQEFEER 183
Query: 182 HRRKLLYSISFY 193
+R +L+S+ FY
Sbjct: 184 RKRVILHSVLFY 195
>UNIPROTKB|A6NG73 [details] [associations]
symbol:A6NG73 "Putative RNA polymerase II subunit A
C-terminal domain phosphatase SSU72-like protein 3" species:9606
"Homo sapiens" [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0004721 "phosphoprotein phosphatase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR006811 Pfam:PF04722 GO:GO:0005634
GO:GO:0005737 GO:GO:0006397 GO:GO:0004721 EMBL:CH471070
InterPro:IPR023485 SUPFAM:SSF52788 EMBL:CH236947 HOVERGEN:HBG059831
PANTHER:PTHR20383 EMBL:AC005521 IPI:IPI00375232
ProteinModelPortal:A6NG73 SMR:A6NG73 PRIDE:A6NG73
neXtProt:NX_A6NG73 InParanoid:A6NG73 PhylomeDB:A6NG73
Genevestigator:A6NG73 Uniprot:A6NG73
Length = 194
Score = 413 (150.4 bits), Expect = 1.3e-38, P = 1.3e-38
Identities = 84/190 (44%), Positives = 119/190 (62%)
Query: 4 RYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFD 63
R A+VC SN NRSMEAH +L+R G V S+GT +HV+LPG P VY+F T YK+M++
Sbjct: 7 RVAVVCVSNINRSMEAHSILRRKGLSVRSFGTESHVRLPGRRPNHPVVYDFATTYKEMYN 66
Query: 64 DLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLN 123
DL RKD E Y NGIL +L RN +K P+R+Q+ FD++FT EE+V+DTVVEDL
Sbjct: 67 DLLRKDRECYTHNGILHILGRNERIKPGPERFQE--CTEFFDVIFTCEERVYDTVVEDLC 124
Query: 124 TREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQXXXXXXXXXXXXXXIIAAFEKRHR 183
+REQ + V VIN+++KD E A +G L ++CQ ++ E++
Sbjct: 125 SREQQTFQPVHVINMDIKDTLEGAILGAFLICEICQCLQQSDDMEDSLEELLLQMEEKAG 184
Query: 184 RKLLYSISFY 193
+ L+++ FY
Sbjct: 185 KSFLHTVCFY 194
>WB|WBGene00020480 [details] [associations]
symbol:ssup-72 species:6239 "Caenorhabditis elegans"
[GO:0004721 "phosphoprotein phosphatase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] InterPro:IPR006811 Pfam:PF04722 GO:GO:0005634
GO:GO:0006397 GO:GO:0004721 eggNOG:COG5211 HOGENOM:HOG000183445
PANTHER:PTHR20383 KO:K15544 GeneTree:ENSGT00390000010165
OMA:SMEAHNF EMBL:FO081267 RefSeq:NP_495386.3 UniGene:Cel.30709
ProteinModelPortal:Q22453 SMR:Q22453 STRING:Q22453 PaxDb:Q22453
EnsemblMetazoa:T13C2.4 GeneID:188472 KEGG:cel:CELE_T13C2.4
UCSC:T13C2.4 CTD:188472 WormBase:T13C2.4 InParanoid:Q22453
NextBio:938928 Uniprot:Q22453
Length = 197
Score = 413 (150.4 bits), Expect = 1.3e-38, P = 1.3e-38
Identities = 87/194 (44%), Positives = 120/194 (61%)
Query: 2 KYRYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFG-TPYKQ 60
K R+A+ CSSN NRSMEAH +LK+ GF++ SYG+G VK+PGP++ +PN YEFG T Y+
Sbjct: 6 KLRFAVSCSSNMNRSMEAHGILKKRGFNIESYGSGNQVKMPGPTVDKPNCYEFGPTTYED 65
Query: 61 MFDDLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVE 120
++ DL KD LY +NG+L M+ RN +K+ PQR+Q + FDIV EE+VFD VV+
Sbjct: 66 IYADLTNKDLHLYTQNGLLHMVDRNRRIKSRPQRFQAETRE--FDIVLCLEERVFDQVVD 123
Query: 121 DLNTREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQXXXXXXXXXXXXXXIIAAFEK 180
LN V VIN++++DN EEA G DLC+ II E+
Sbjct: 124 FLNRSVGKSGNPVHVINIDIEDNAEEATFGAFFVADLCEKLERSEDFEEDIDQIITDLEE 183
Query: 181 RH-RRKLLYSISFY 193
+ +R LL++I FY
Sbjct: 184 NNPKRNLLHTICFY 197
>CGD|CAL0001446 [details] [associations]
symbol:SSU72 species:5476 "Candida albicans" [GO:0005847
"mRNA cleavage and polyadenylation specificity factor complex"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0031124 "mRNA
3'-end processing" evidence=IEA] [GO:0006368 "transcription
elongation from RNA polymerase II promoter" evidence=IEA]
[GO:0031564 "transcription antitermination" evidence=IEA]
[GO:0030846 "termination of RNA polymerase II transcription,
poly(A)-coupled" evidence=IEA] [GO:0001174 "transcriptional start
site selection at RNA polymerase II promoter" evidence=IEA]
[GO:0070940 "dephosphorylation of RNA polymerase II C-terminal
domain" evidence=IEA] [GO:0006379 "mRNA cleavage" evidence=IEA]
[GO:0030847 "termination of RNA polymerase II transcription,
exosome-dependent" evidence=IEA] [GO:0009302 "snoRNA transcription"
evidence=IEA] [GO:0008420 "CTD phosphatase activity" evidence=IEA]
[GO:0004725 "protein tyrosine phosphatase activity" evidence=IEA]
InterPro:IPR006811 Pfam:PF04722 CGD:CAL0001446 GO:GO:0005634
GO:GO:0006397 GO:GO:0004721 EMBL:AACQ01000131 EMBL:AACQ01000130
eggNOG:COG5211 HOGENOM:HOG000183445 PANTHER:PTHR20383 KO:K15544
RefSeq:XP_713235.1 RefSeq:XP_713287.1 ProteinModelPortal:Q59UG2
STRING:Q59UG2 GeneID:3645062 GeneID:3645129 KEGG:cal:CaO19.2402
KEGG:cal:CaO19.9939 Uniprot:Q59UG2
Length = 226
Score = 391 (142.7 bits), Expect = 1.3e-38, Sum P(2) = 1.3e-38
Identities = 79/154 (51%), Positives = 108/154 (70%)
Query: 8 VCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFDDL-R 66
VC+SN NRSME+H L G+DV S+GTG V+LPGPS+ +PNVYEFGTPY+ M+DDL
Sbjct: 14 VCASNNNRSMESHKQLMDAGYDVHSFGTGTAVRLPGPSVDKPNVYEFGTPYQVMYDDLIS 73
Query: 67 RKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLNTR- 125
+K +LY+ NG++ ML+RN VK AP++W NA G FD+V T EE+ FD+V++DL R
Sbjct: 74 QKSRKLYESNGLIHMLERNKSVKEAPEKWHRNAPLGKFDLVITCEERCFDSVIDDLMHRM 133
Query: 126 --EQP-----FMKTVLVINLEVKDNHEEAAIGGR 152
P + V VIN+++KD++E A IGG+
Sbjct: 134 YDRDPSDNDDVKRLVHVINIDIKDDNENAIIGGK 167
Score = 38 (18.4 bits), Expect = 1.3e-38, Sum P(2) = 1.3e-38
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 174 IIAAFEKRHRR-KLLYSISFY 193
II +++ H LYS+S+Y
Sbjct: 206 IITEWQRDHTNLPTLYSVSYY 226
>UNIPROTKB|G1K158 [details] [associations]
symbol:SSU72 "RNA polymerase II subunit A C-terminal domain
phosphatase SSU72" species:9913 "Bos taurus" [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0004721 "phosphoprotein phosphatase activity" evidence=IEA]
InterPro:IPR006811 Pfam:PF04722 GO:GO:0005634 GO:GO:0006397
GO:GO:0004721 PANTHER:PTHR20383 GeneTree:ENSGT00390000010165
OMA:SMEAHNF EMBL:DAAA02043236 Ensembl:ENSBTAT00000003331
Uniprot:G1K158
Length = 168
Score = 412 (150.1 bits), Expect = 1.6e-38, P = 1.6e-38
Identities = 82/169 (48%), Positives = 112/169 (66%)
Query: 25 RHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFDDLRRKDPELYKRNGILPMLKR 84
+ GF V S+GTG HVKLPGP+ +PNVY+F T Y QM++DL RKD ELY +NGIL ML R
Sbjct: 2 KRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQMYNDLLRKDKELYTQNGILHMLDR 61
Query: 85 NIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLNTREQPFMKTVLVINLEVKDNH 144
N +K P+R+Q N D FD++ T EE+V+D VVEDLN+REQ + V VIN++++DNH
Sbjct: 62 NKRIKPRPERFQ-NCKD-LFDLILTCEERVYDQVVEDLNSREQETCQPVHVINVDIQDNH 119
Query: 145 EEAAIGGRLTFDLCQXXXXXXXXXXXXXXIIAAFEKRHRRKLLYSISFY 193
EEA +G L +LCQ ++ FE++ R L+++ FY
Sbjct: 120 EEATLGAFLICELCQCIQHTEDMENEIDELLQEFEEKSGRTFLHTVCFY 168
>UNIPROTKB|F1RF63 [details] [associations]
symbol:LOC100524945 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0004721 "phosphoprotein
phosphatase activity" evidence=IEA] InterPro:IPR006811 Pfam:PF04722
GO:GO:0005634 GO:GO:0006397 GO:GO:0004721 PANTHER:PTHR20383
GeneTree:ENSGT00390000010165 EMBL:CU467106 RefSeq:XP_003129660.1
Ensembl:ENSSSCT00000016140 GeneID:100524945 KEGG:ssc:100524945
OMA:ICELCQR Uniprot:F1RF63
Length = 195
Score = 398 (145.2 bits), Expect = 4.9e-37, P = 4.9e-37
Identities = 81/190 (42%), Positives = 117/190 (61%)
Query: 4 RYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFD 63
R A+VC SN NRSMEAH +L + GF V S+G G+ V+LPGP+ P +Y F TPY+QM
Sbjct: 8 RVAVVCMSNMNRSMEAHSILSKKGFRVRSFGAGSMVRLPGPAHHRPVLYSFRTPYRQMRR 67
Query: 64 DLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLN 123
DL DP+ Y+RNGIL +L RN +K P+R+QD +FD++FT EE V+D VV L
Sbjct: 68 DLAWLDPDCYRRNGILHLLGRNERIKPCPERFQD--CREAFDVIFTCEESVYDRVVGHLC 125
Query: 124 TREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQXXXXXXXXXXXXXXIIAAFEKRHR 183
REQ + V VIN++++D+ E+A +G + +LCQ ++ E++
Sbjct: 126 AREQETCQPVHVINVDMQDDLEDATLGSLVICELCQRLQQAEDMEDCLAELLLGVERKTG 185
Query: 184 RKLLYSISFY 193
R L+++ FY
Sbjct: 186 RSFLHTVCFY 195
>UNIPROTKB|G5E5U5 [details] [associations]
symbol:G5E5U5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0006397 "mRNA processing" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0004721 "phosphoprotein phosphatase
activity" evidence=IEA] InterPro:IPR006811 Pfam:PF04722
GO:GO:0005634 GO:GO:0006397 GO:GO:0004721 PANTHER:PTHR20383
GeneTree:ENSGT00390000010165 EMBL:DAAA02040978
ProteinModelPortal:G5E5U5 Ensembl:ENSBTAT00000031154 OMA:SFLHTIC
NextBio:20901442 Uniprot:G5E5U5
Length = 194
Score = 391 (142.7 bits), Expect = 2.7e-36, P = 2.7e-36
Identities = 80/188 (42%), Positives = 118/188 (62%)
Query: 6 AMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFDDL 65
A+VC+SN NRSMEAH +L+R GF V S+G G+ V+LPG + P VY+F T Y++M DL
Sbjct: 9 AVVCTSNMNRSMEAHRILRRKGFRVRSFGAGSRVRLPGRARNLPVVYDFSTTYEEMRKDL 68
Query: 66 RRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLNTR 125
RKD + Y NGIL +L RN +K P+R+Q+ D FD++FT EE V+D VVE+L R
Sbjct: 69 VRKDGQRYNSNGILHILGRNERIKPRPERFQE-CRD-RFDVIFTCEESVYDKVVEELWVR 126
Query: 126 EQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQXXXXXXXXXXXXXXIIAAFEKRHRRK 185
EQ + V VIN+++ DN E+A +G + +LC+ ++ A E++ +
Sbjct: 127 EQETFQPVHVINVDMADNAEDATLGSLIICELCERLQQADNLEDSVVEVLLAAERKTGKS 186
Query: 186 LLYSISFY 193
L+++ FY
Sbjct: 187 FLHTVCFY 194
>UNIPROTKB|E1BAB2 [details] [associations]
symbol:E1BAB2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0006397 "mRNA processing" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0004721 "phosphoprotein phosphatase
activity" evidence=IEA] InterPro:IPR006811 Pfam:PF04722
GO:GO:0005634 GO:GO:0006397 GO:GO:0004721 PANTHER:PTHR20383
GeneTree:ENSGT00390000010165 EMBL:DAAA02040970 IPI:IPI00907758
ProteinModelPortal:E1BAB2 PRIDE:E1BAB2 Ensembl:ENSBTAT00000023143
OMA:SDDMEDS NextBio:20872366 Uniprot:E1BAB2
Length = 194
Score = 389 (142.0 bits), Expect = 4.4e-36, P = 4.4e-36
Identities = 80/190 (42%), Positives = 116/190 (61%)
Query: 4 RYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFD 63
+ A+VC SN NRSMEAH +L++ GF V S+G G+ V+LPG + P VY+F T Y+QM
Sbjct: 7 KVAVVCMSNMNRSMEAHSILRKKGFSVRSFGAGSRVRLPGTARNLPVVYDFSTTYEQMRK 66
Query: 64 DLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLN 123
DL R D E Y NGIL +L RN +K P+R+Q+ D FD++FT EE V+D V+E+L
Sbjct: 67 DLVRIDRERYTSNGILHILGRNERIKPRPERFQE-CRD-RFDVIFTCEESVYDRVIEELW 124
Query: 124 TREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQXXXXXXXXXXXXXXIIAAFEKRHR 183
REQ + V VIN+ + DN E+A +G + +LC+ ++ A E++
Sbjct: 125 VREQETCQPVYVINVNMDDNTEDATLGSLIICELCERLQQAEDMEGSLAELLLAVERKTG 184
Query: 184 RKLLYSISFY 193
R L+++ FY
Sbjct: 185 RSFLHTVCFY 194
>UNIPROTKB|G3MZ63 [details] [associations]
symbol:LOC788349 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0004721 "phosphoprotein
phosphatase activity" evidence=IEA] InterPro:IPR006811 Pfam:PF04722
GO:GO:0005634 GO:GO:0006397 GO:GO:0004721 PANTHER:PTHR20383
GeneTree:ENSGT00390000010165 EMBL:DAAA02040974 OMA:ICELCQR
ProteinModelPortal:G3MZ63 Ensembl:ENSBTAT00000064162 Uniprot:G3MZ63
Length = 194
Score = 389 (142.0 bits), Expect = 4.4e-36, P = 4.4e-36
Identities = 80/188 (42%), Positives = 117/188 (62%)
Query: 6 AMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFDDL 65
A+VC SN NRSMEAH +L+R GF V S+G G+ V+LPG + P VY+F T Y++M DL
Sbjct: 9 AVVCMSNMNRSMEAHRILRRKGFRVRSFGAGSRVRLPGRARNLPVVYDFSTTYEEMRKDL 68
Query: 66 RRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLNTR 125
RKD + Y NGIL +L RN +K P+R+Q+ D FD++FT EE V+D VVE+L R
Sbjct: 69 VRKDRQRYNSNGILHILGRNERIKPRPERFQE-CRD-RFDVIFTCEESVYDRVVEELWVR 126
Query: 126 EQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQXXXXXXXXXXXXXXIIAAFEKRHRRK 185
EQ + V VIN+++ DN E+A +G + +LC+ ++ A E++ +
Sbjct: 127 EQETFQPVHVINVDMADNAEDATLGSLIICELCERLQQADNLEDSVVEVLLAAERKTGKS 186
Query: 186 LLYSISFY 193
L+++ FY
Sbjct: 187 FLHTVCFY 194
>SGD|S000005166 [details] [associations]
symbol:SSU72 "Phosphatase and transcription/RNA-processing
factor" species:4932 "Saccharomyces cerevisiae" [GO:0005847 "mRNA
cleavage and polyadenylation specificity factor complex"
evidence=IDA;IPI] [GO:0031564 "transcription antitermination"
evidence=IMP] [GO:0004722 "protein serine/threonine phosphatase
activity" evidence=IMP;IDA] [GO:0070940 "dephosphorylation of RNA
polymerase II C-terminal domain" evidence=IMP;IDA] [GO:0006369
"termination of RNA polymerase II transcription" evidence=IMP]
[GO:0008420 "CTD phosphatase activity" evidence=IMP;IDA]
[GO:0004721 "phosphoprotein phosphatase activity" evidence=IEA;IGI]
[GO:0005634 "nucleus" evidence=IEA;IGI;IPI] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0030846 "termination of RNA polymerase II
transcription, poly(A)-coupled" evidence=IMP;IPI] [GO:0030847
"termination of RNA polymerase II transcription, exosome-dependent"
evidence=IMP;IPI] [GO:0006367 "transcription initiation from RNA
polymerase II promoter" evidence=IGI;IPI] [GO:0009302 "snoRNA
transcription" evidence=IMP] [GO:0004725 "protein tyrosine
phosphatase activity" evidence=ISS;IDA] [GO:0001174
"transcriptional start site selection at RNA polymerase II
promoter" evidence=IGI;IMP] [GO:0006368 "transcription elongation
from RNA polymerase II promoter" evidence=IGI;IMP] [GO:0031124
"mRNA 3'-end processing" evidence=IMP] [GO:0006379 "mRNA cleavage"
evidence=IMP] InterPro:IPR006811 Pfam:PF04722 SGD:S000005166
EMBL:BK006947 GO:GO:0004725 GO:GO:0006368 EMBL:U20390 GO:GO:0005847
GO:GO:0006379 GO:GO:0031124 GO:GO:0008420 GO:GO:0030846
GO:GO:0070940 GO:GO:0030847 GO:GO:0031564 eggNOG:COG5211
HOGENOM:HOG000183445 PANTHER:PTHR20383 KO:K15544
GeneTree:ENSGT00390000010165 OMA:SMEAHNF OrthoDB:EOG4DFSXT
EMBL:Z71498 EMBL:AY558421 PIR:S63180 RefSeq:NP_014177.1
ProteinModelPortal:P53538 SMR:P53538 DIP:DIP-6700N IntAct:P53538
MINT:MINT-432815 STRING:P53538 PaxDb:P53538 PeptideAtlas:P53538
EnsemblFungi:YNL222W GeneID:855499 KEGG:sce:YNL222W CYGD:YNL222w
NextBio:979493 Genevestigator:P53538 GermOnline:YNL222W
GO:GO:0009302 GO:GO:0001174 Uniprot:P53538
Length = 206
Score = 389 (142.0 bits), Expect = 4.4e-36, P = 4.4e-36
Identities = 75/154 (48%), Positives = 105/154 (68%)
Query: 4 RYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFD 63
++ VC+SN NRSME+H +L+ G++VSSYGTG+ V+LPG S+ +PNVY FGTPY +++
Sbjct: 10 KFCTVCASNNNRSMESHKVLQEAGYNVSSYGTGSAVRLPGLSIDKPNVYSFGTPYNDIYN 69
Query: 64 DLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLN 123
DL + + YK NG+L ML RN +K AP++WQ++ FD VFT EE+ FD V EDL
Sbjct: 70 DLLSQSADRYKSNGLLQMLDRNRRLKKAPEKWQESTK--VFDFVFTCEERCFDAVCEDLM 127
Query: 124 TREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDL 157
R K V VIN+++KD+ E A IG + +L
Sbjct: 128 NRGGKLNKIVHVINVDIKDDDENAKIGSKAILEL 161
>ASPGD|ASPL0000012150 [details] [associations]
symbol:AN3810 species:162425 "Emericella nidulans"
[GO:0005847 "mRNA cleavage and polyadenylation specificity factor
complex" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0008420 "CTD phosphatase activity" evidence=IEA] [GO:0004725
"protein tyrosine phosphatase activity" evidence=IEA] [GO:0031124
"mRNA 3'-end processing" evidence=IEA] [GO:0006368 "transcription
elongation from RNA polymerase II promoter" evidence=IEA]
[GO:0031564 "transcription antitermination" evidence=IEA]
[GO:0001174 "transcriptional start site selection at RNA polymerase
II promoter" evidence=IEA] [GO:0030846 "termination of RNA
polymerase II transcription, poly(A)-coupled" evidence=IEA]
[GO:0070940 "dephosphorylation of RNA polymerase II C-terminal
domain" evidence=IEA] [GO:0006379 "mRNA cleavage" evidence=IEA]
[GO:0030847 "termination of RNA polymerase II transcription,
exosome-dependent" evidence=IEA] [GO:0009302 "snoRNA transcription"
evidence=IEA] InterPro:IPR006811 Pfam:PF04722 GO:GO:0005634
GO:GO:0006397 EMBL:BN001302 GO:GO:0004721 HOGENOM:HOG000183445
PANTHER:PTHR20383 EnsemblFungi:CADANIAT00004902 OMA:CEERCWD
Uniprot:C8V6T1
Length = 263
Score = 386 (140.9 bits), Expect = 9.2e-36, P = 9.2e-36
Identities = 79/159 (49%), Positives = 104/159 (65%)
Query: 2 KYRYAMVCSSNQNRSMEAHYLLKRHG--FDVSSYGTGAHVKLPGPSLREPNVYEFG-TPY 58
K R+ VC+SNQNRSMEAH L F V S+GTG+ V+LPGPS+ +PNVY F T Y
Sbjct: 49 KLRFCTVCASNQNRSMEAHLRLSTAASPFPVISFGTGSLVRLPGPSITQPNVYNFNSTSY 108
Query: 59 KQMFDDLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTV 118
QM+D+L KD LY+ NGIL ML RN VK P+R+QD G D++ T EE+ +D V
Sbjct: 109 SQMYDELLSKDERLYRNNGILNMLDRNRNVKWGPERFQD--WGGVVDVIITCEERCWDAV 166
Query: 119 VEDLNTREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDL 157
V+DL + + V V N+++KDNHEEA +GG+ +L
Sbjct: 167 VDDLLNKGSTLNRPVHVFNVDIKDNHEEALVGGKAILEL 205
>UNIPROTKB|G3MZ34 [details] [associations]
symbol:LOC788349 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0004721 "phosphoprotein
phosphatase activity" evidence=IEA] InterPro:IPR006811 Pfam:PF04722
GO:GO:0005634 GO:GO:0006397 GO:GO:0004721 PANTHER:PTHR20383
GeneTree:ENSGT00390000010165 EMBL:DAAA02040971
ProteinModelPortal:G3MZ34 Ensembl:ENSBTAT00000063188 OMA:FIICELC
NextBio:20872810 Uniprot:G3MZ34
Length = 194
Score = 380 (138.8 bits), Expect = 4.0e-35, P = 4.0e-35
Identities = 79/188 (42%), Positives = 115/188 (61%)
Query: 6 AMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFDDL 65
A+VC SN NRSMEAH +L+R GF V S+G G+ V+LPG + P VY+F T Y++M DL
Sbjct: 9 AVVCMSNMNRSMEAHRILRRKGFRVRSFGAGSRVRLPGRARNLPVVYDFSTTYEEMRKDL 68
Query: 66 RRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLNTR 125
RKD + Y NGIL +L RN +K P+R+Q+ D FD++FT E V+D VVE+L R
Sbjct: 69 VRKDRQRYNSNGILHILGRNERIKPRPERFQE-CRD-RFDVIFTCAESVYDRVVEELWVR 126
Query: 126 EQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQXXXXXXXXXXXXXXIIAAFEKRHRRK 185
EQ + V VIN+++ DN E+A +G + +LC+ ++ A E + +
Sbjct: 127 EQETFQPVHVINVDMADNAEDATLGSFIICELCERLQQADNLEDSLVQVLLAAESKTGKS 186
Query: 186 LLYSISFY 193
L+++ FY
Sbjct: 187 FLHTVCFY 194
>UNIPROTKB|F1MS03 [details] [associations]
symbol:F1MS03 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0006397 "mRNA processing" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0004721 "phosphoprotein phosphatase
activity" evidence=IEA] InterPro:IPR006811 Pfam:PF04722
GO:GO:0005634 GO:GO:0006397 GO:GO:0004721 PANTHER:PTHR20383
GeneTree:ENSGT00390000010165 EMBL:DAAA02067807 IPI:IPI00703172
Ensembl:ENSBTAT00000000739 Uniprot:F1MS03
Length = 182
Score = 362 (132.5 bits), Expect = 3.2e-33, P = 3.2e-33
Identities = 79/193 (40%), Positives = 115/193 (59%)
Query: 1 MKYRYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQ 60
+ R +VCS+NQN SME H +L + TG +VKLPGP+ PNVY+F T +
Sbjct: 4 LSLRLTVVCSNNQNWSMEVHDILSK---------TGTNVKLPGPARDRPNVYDFRTTCDE 54
Query: 61 MFDDLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVE 120
M+ DL RKD E+Y +NG+L ML+RN +K P+R+QD D FD++ + EE+V+D VVE
Sbjct: 55 MYKDLLRKDKEMYMQNGVLWMLERNKSIKPRPERFQD-CKD-PFDLILSCEERVYDQVVE 112
Query: 121 DLNTREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQXXXXXXXXXXXXXXIIAAFEK 180
D+N+ EQ + V VIN+ D H+EA +G L DLCQ ++ F++
Sbjct: 113 DMNSGEQETCQPVHVINV---DTHKEATLGAFLICDLCQCVQLMGDMEDGISKLLQVFQE 169
Query: 181 RHRRKLLYSISFY 193
+ R L+++ FY
Sbjct: 170 KSGRSFLHTVCFY 182
>UNIPROTKB|F1RF65 [details] [associations]
symbol:LOC100737070 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0004721 "phosphoprotein
phosphatase activity" evidence=IEA] InterPro:IPR006811 Pfam:PF04722
GO:GO:0005634 GO:GO:0006397 GO:GO:0004721 PANTHER:PTHR20383
GeneTree:ENSGT00390000010165 EMBL:CU915729
Ensembl:ENSSSCT00000016138 Uniprot:F1RF65
Length = 111
Score = 172 (65.6 bits), Expect = 4.4e-13, P = 4.4e-13
Identities = 38/113 (33%), Positives = 63/113 (55%)
Query: 81 MLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLNTREQPFMKTVLVINLEV 140
+L RN +K P+R+QD +FD++FT EE V+D VV L REQ + V VIN+++
Sbjct: 1 LLGRNEHIKPCPERFQD--CREAFDVIFTCEESVYDRVVGHLCAREQETCQPVHVINVDM 58
Query: 141 KDNHEEAAIGGRLTFDLCQXXXXXXXXXXXXXXIIAAFEKRHRRKLLYSISFY 193
+D+ E+A +G + +LCQ ++ E++ R L+++ FY
Sbjct: 59 QDDLEDATLGSLVLCELCQRLQQVDDMENCLAELLLGVEQKTGRSFLHTVCFY 111
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.322 0.139 0.413 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 193 179 0.00089 109 3 11 22 0.39 32
31 0.39 35
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 30
No. of states in DFA: 589 (63 KB)
Total size of DFA: 161 KB (2096 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 16.70u 0.19s 16.89t Elapsed: 00:00:01
Total cpu time: 16.71u 0.19s 16.90t Elapsed: 00:00:02
Start: Fri May 10 21:01:20 2013 End: Fri May 10 21:01:22 2013