BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029441
(193 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6PC19|SSU72_DANRE RNA polymerase II subunit A C-terminal domain phosphatase SSU72
OS=Danio rerio GN=ssu72 PE=2 SV=1
Length = 194
Score = 215 bits (547), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 100/190 (52%), Positives = 139/190 (73%), Gaps = 2/190 (1%)
Query: 4 RYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFD 63
R A+VCSSNQNRSMEAH +L + GFDV S+GTG HVKLPGP+ +PN+Y+F T Y+QM++
Sbjct: 7 RVAVVCSSNQNRSMEAHNILSKRGFDVRSFGTGTHVKLPGPAPDKPNIYDFKTTYEQMYN 66
Query: 64 DLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLN 123
DL RKD ELY +NGIL ML RN +K+ P+R+Q + FD+V T EE+V+D V+EDLN
Sbjct: 67 DLVRKDKELYTQNGILHMLDRNKRIKSRPERFQ--SCRDQFDLVITCEERVYDQVLEDLN 124
Query: 124 TREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQEIEAAESWEESIDDIIAAFEKRHR 183
+REQ + V VIN++++DNHEEA +G L +LCQ I+ + E +D+++ FE++
Sbjct: 125 SREQESFQPVHVINVDIQDNHEEATLGAFLICELCQCIQHTDDMENEMDELLQEFEEKSH 184
Query: 184 RKLLYSISFY 193
R L+S+ FY
Sbjct: 185 RPFLHSVCFY 194
>sp|Q5ZJQ7|SSU72_CHICK RNA polymerase II subunit A C-terminal domain phosphatase SSU72
OS=Gallus gallus GN=SSU72 PE=2 SV=1
Length = 194
Score = 214 bits (546), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 101/190 (53%), Positives = 136/190 (71%), Gaps = 2/190 (1%)
Query: 4 RYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFD 63
R A+VCSSNQNRSMEAH +L + GF V S+GTG HVKLPGP+ +PNVY+F T Y QM++
Sbjct: 7 RVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQMYN 66
Query: 64 DLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLN 123
DL RKD ELY +NGIL ML RN +K P+R+Q+ FD++ T EE+V+D VVEDLN
Sbjct: 67 DLLRKDKELYTQNGILHMLDRNKRIKPRPERFQN--CKDVFDLILTCEERVYDQVVEDLN 124
Query: 124 TREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQEIEAAESWEESIDDIIAAFEKRHR 183
+REQ + V VIN++++DNHEEA +G L +LCQ I+ E E ID+++ FE++
Sbjct: 125 SREQETCQPVHVINVDIQDNHEEATLGAFLICELCQCIQHTEDMENEIDELLQEFEEKSG 184
Query: 184 RKLLYSISFY 193
R L+++ FY
Sbjct: 185 RTFLHTVCFY 194
>sp|Q17QI2|SSU72_BOVIN RNA polymerase II subunit A C-terminal domain phosphatase SSU72
OS=Bos taurus GN=SSU72 PE=2 SV=1
Length = 194
Score = 214 bits (545), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 103/190 (54%), Positives = 137/190 (72%), Gaps = 2/190 (1%)
Query: 4 RYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFD 63
R A+VCSSNQNRSMEAH +L + GF V S+GTG HVKLPGP+ +PNVY+F T Y QM++
Sbjct: 7 RVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQMYN 66
Query: 64 DLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLN 123
DL RKD ELY +NGIL ML RN +K P+R+Q N D FD++ T EE+V+D VVEDLN
Sbjct: 67 DLLRKDKELYTQNGILHMLDRNKRIKPRPERFQ-NCKD-LFDLILTCEERVYDQVVEDLN 124
Query: 124 TREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQEIEAAESWEESIDDIIAAFEKRHR 183
+REQ + V VIN++++DNHEEA +G L +LCQ I+ E E ID+++ FE++
Sbjct: 125 SREQETCQPVHVINVDIQDNHEEATLGAFLICELCQCIQHTEDMENEIDELLQEFEEKSG 184
Query: 184 RKLLYSISFY 193
R L+++ FY
Sbjct: 185 RTFLHTVCFY 194
>sp|Q9CY97|SSU72_MOUSE RNA polymerase II subunit A C-terminal domain phosphatase SSU72
OS=Mus musculus GN=Ssu72 PE=2 SV=1
Length = 194
Score = 214 bits (545), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 102/190 (53%), Positives = 137/190 (72%), Gaps = 2/190 (1%)
Query: 4 RYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFD 63
R A+VCSSNQNRSMEAH +L + GF V S+GTG HVKLPGP+ +PNVY+F T Y QM++
Sbjct: 7 RVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQMYN 66
Query: 64 DLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLN 123
DL RKD ELY +NGIL ML RN +K P+R+Q N D FD++ T EE+V+D VVEDLN
Sbjct: 67 DLLRKDKELYTQNGILHMLDRNKRIKPRPERFQ-NCTD-LFDLILTCEERVYDQVVEDLN 124
Query: 124 TREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQEIEAAESWEESIDDIIAAFEKRHR 183
+REQ + V V+N++++DNHEEA +G L +LCQ I+ E E ID+++ FE++
Sbjct: 125 SREQETCQPVHVVNVDIQDNHEEATLGAFLICELCQCIQHTEDMENEIDELLQEFEEKSG 184
Query: 184 RKLLYSISFY 193
R L+++ FY
Sbjct: 185 RAFLHTVCFY 194
>sp|Q9NP77|SSU72_HUMAN RNA polymerase II subunit A C-terminal domain phosphatase SSU72
OS=Homo sapiens GN=SSU72 PE=1 SV=1
Length = 194
Score = 213 bits (543), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 100/190 (52%), Positives = 136/190 (71%), Gaps = 2/190 (1%)
Query: 4 RYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFD 63
R A+VCSSNQNRSMEAH +L + GF V S+GTG HVKLPGP+ +PNVY+F T Y QM++
Sbjct: 7 RVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQMYN 66
Query: 64 DLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLN 123
DL RKD ELY +NGIL ML RN +K P+R+Q+ FD++ T EE+V+D VVEDLN
Sbjct: 67 DLLRKDKELYTQNGILHMLDRNKRIKPRPERFQN--CKDLFDLILTCEERVYDQVVEDLN 124
Query: 124 TREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQEIEAAESWEESIDDIIAAFEKRHR 183
+REQ + V V+N++++DNHEEA +G L +LCQ I+ E E ID+++ FE++
Sbjct: 125 SREQETCQPVHVVNVDIQDNHEEATLGAFLICELCQCIQHTEDMENEIDELLQEFEEKSG 184
Query: 184 RKLLYSISFY 193
R L+++ FY
Sbjct: 185 RTFLHTVCFY 194
>sp|Q4KLK9|SSU72_RAT RNA polymerase II subunit A C-terminal domain phosphatase SSU72
OS=Rattus norvegicus GN=Ssu72 PE=2 SV=1
Length = 194
Score = 213 bits (543), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 100/190 (52%), Positives = 136/190 (71%), Gaps = 2/190 (1%)
Query: 4 RYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFD 63
R A+VCSSNQNRSMEAH +L + GF V S+GTG HVKLPGP+ +PNVY+F T Y QM++
Sbjct: 7 RVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQMYN 66
Query: 64 DLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLN 123
DL RKD ELY +NGIL ML RN +K P+R+Q+ FD++ T EE+V+D VVEDLN
Sbjct: 67 DLLRKDKELYTQNGILHMLDRNKRIKPRPERFQN--CKDLFDLILTCEERVYDQVVEDLN 124
Query: 124 TREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQEIEAAESWEESIDDIIAAFEKRHR 183
+REQ + V V+N++++DNHEEA +G L +LCQ I+ E E ID+++ FE++
Sbjct: 125 SREQETCQPVHVVNVDIQDNHEEATLGAFLICELCQCIQHTEDMENEIDELLQEFEEKSG 184
Query: 184 RKLLYSISFY 193
R L+++ FY
Sbjct: 185 RAFLHTVCFY 194
>sp|Q6NRQ7|SSU72_XENLA RNA polymerase II subunit A C-terminal domain phosphatase SSU72
OS=Xenopus laevis GN=ssu72 PE=2 SV=1
Length = 194
Score = 209 bits (533), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 100/190 (52%), Positives = 135/190 (71%), Gaps = 2/190 (1%)
Query: 4 RYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFD 63
R A+VCSSNQNRSMEAH +L + F+V S+GTG HVKLPGP+ +PNVY+F T Y+QM+
Sbjct: 7 RVAVVCSSNQNRSMEAHNILSKRSFNVRSFGTGTHVKLPGPAPDKPNVYDFKTTYEQMYS 66
Query: 64 DLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLN 123
DL +KD ELY +NGIL ML RN +K P+R+Q+ FD+V T EE+V+D VVE+LN
Sbjct: 67 DLLKKDKELYTQNGILHMLDRNRRIKPRPERFQN--CKDYFDLVITCEERVYDQVVEELN 124
Query: 124 TREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQEIEAAESWEESIDDIIAAFEKRHR 183
+REQ + V VIN++++DNHEEA +G L +LCQ I+ E E ID+++ FE +
Sbjct: 125 SREQETCQPVHVINVDIQDNHEEATLGAFLICELCQCIQHTEDMENEIDELLQEFEDKSG 184
Query: 184 RKLLYSISFY 193
R L++I FY
Sbjct: 185 RTFLHTICFY 194
>sp|Q558Z3|SSU72_DICDI RNA polymerase II subunit A C-terminal domain phosphatase SSU72
OS=Dictyostelium discoideum GN=ssu72 PE=3 SV=1
Length = 214
Score = 204 bits (518), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 92/193 (47%), Positives = 138/193 (71%), Gaps = 4/193 (2%)
Query: 4 RYAMVCSSNQNRSMEAHYLLKRHGF-DVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMF 62
R AMVC+SNQNRS+EAH+L ++GF ++ S+GT AH KLPGPS+ +PN++ FGTPY++++
Sbjct: 23 RIAMVCASNQNRSLEAHHLFVKNGFKNIRSFGTSAHCKLPGPSIHQPNIFSFGTPYQEIY 82
Query: 63 DDLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDL 122
L+ +D ELY RNG+L ML+RNI VK AP++WQ+ F+IV+TF+++V+D V+EDL
Sbjct: 83 TSLKNQDQELYIRNGLLNMLERNISVKLAPEKWQEEQ-QSKFEIVYTFDQRVYDAVIEDL 141
Query: 123 NTRE--QPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQEIEAAESWEESIDDIIAAFEK 180
R+ ++ V +INL+VKD HEEA G + ++ IE +WEE +D I+ F K
Sbjct: 142 LQRDVSSSLLQPVHIINLQVKDTHEEAVGGAQHALEITSIIEKTLNWEEKLDQILEDFYK 201
Query: 181 RHRRKLLYSISFY 193
+ R+ L+++ FY
Sbjct: 202 QTSRQFLHTLMFY 214
>sp|O42868|SSU72_SCHPO RNA polymerase II subunit A C-terminal domain phosphatase ssu72
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=ssu72 PE=1 SV=1
Length = 197
Score = 185 bits (469), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 87/190 (45%), Positives = 130/190 (68%), Gaps = 4/190 (2%)
Query: 6 AMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFDDL 65
+++C+SNQNRSMEAH +LK G+ V S+GTG+ V+LPGPS+ +PN+Y+FG PY +++ +L
Sbjct: 10 SVICASNQNRSMEAHNVLKNAGYQVDSFGTGSAVRLPGPSIDKPNIYQFGYPYDEIYKEL 69
Query: 66 RRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLNTR 125
+D LY NG+L ML RN +K AP RWQD D ++IV T EE+ +D + EDL R
Sbjct: 70 EAQDSRLYTANGLLKMLDRNRRIKRAPCRWQDQ--DSIYNIVITCEERCYDAICEDLYRR 127
Query: 126 EQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQEI-EAAESWEESIDDIIAAFEKRHRR 184
+ + V +IN+++KDNHEEA++GG+ DL ++ EA + EE I+A F+ H +
Sbjct: 128 GETLNRPVYLINVDIKDNHEEASVGGKAILDLVNKLTEAQDKLEELFPSIMADFQSNHPK 187
Query: 185 -KLLYSISFY 193
+LY+I F+
Sbjct: 188 LPVLYTIHFF 197
>sp|A6NK39|S72L1_HUMAN Putative RNA polymerase II subunit A C-terminal domain phosphatase
SSU72-like protein 1 OS=Homo sapiens PE=3 SV=1
Length = 194
Score = 180 bits (457), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 88/190 (46%), Positives = 132/190 (69%), Gaps = 2/190 (1%)
Query: 4 RYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFD 63
R A+VC SN NRSMEAH +L+R G V S+GT +HV+LPGP P VY+F T YKQM++
Sbjct: 7 RVAVVCVSNVNRSMEAHSILRRKGLSVRSFGTESHVRLPGPRPNRPVVYDFATTYKQMYN 66
Query: 64 DLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLN 123
DL RKD E Y RNGIL +L RN +K P+R+Q+ SFD++FT EE V+DTVVEDL
Sbjct: 67 DLLRKDRERYTRNGILHILGRNERIKPGPERFQE--CTDSFDVIFTCEESVYDTVVEDLC 124
Query: 124 TREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQEIEAAESWEESIDDIIAAFEKRHR 183
+REQ + V VIN++++D E+A +G L ++CQ ++ ++ E+++++++ E++
Sbjct: 125 SREQQTFQPVHVINMDIQDTLEDATLGAFLICEICQCLQQSDDIEDNLEELLLQMEEKAG 184
Query: 184 RKLLYSISFY 193
+ L+++ FY
Sbjct: 185 KSFLHTVCFY 194
>sp|Q75E60|SSU72_ASHGO RNA polymerase II subunit A C-terminal domain phosphatase SSU72
OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 /
FGSC 9923 / NRRL Y-1056) GN=SSU72 PE=3 SV=1
Length = 281
Score = 179 bits (455), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 91/199 (45%), Positives = 130/199 (65%), Gaps = 11/199 (5%)
Query: 4 RYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFD 63
R VC+SN NRSME+H +LK G+DVSSYGTG+ V+LPG S+ +PNVY FGTPY +++
Sbjct: 85 RLCTVCASNNNRSMESHRVLKEAGYDVSSYGTGSAVRLPGLSIDKPNVYPFGTPYNDIYN 144
Query: 64 DLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLN 123
DL + E YK NG+L ML RN +K AP++W D+ FD VFT EE+ FD+V EDL
Sbjct: 145 DLLAQSAERYKSNGLLEMLDRNRRIKKAPEKWHDS--QKVFDFVFTCEERCFDSVCEDLM 202
Query: 124 TREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQEIEA--------AESWEESIDDII 175
R K V VINL+++D++E A IGGR +L + + + +E++I D++
Sbjct: 203 NRGGQLNKIVHVINLDIRDDNENAKIGGRAMLELVKALNSKMQECDQQGVPFEDTIMDVV 262
Query: 176 AAFEKRHRR-KLLYSISFY 193
A +++ H + LLYS ++Y
Sbjct: 263 ADWQQAHPQLPLLYSPAYY 281
>sp|A8MSY0|S72L2_HUMAN Putative RNA polymerase II subunit A C-terminal domain phosphatase
SSU72-like protein 2 OS=Homo sapiens PE=3 SV=1
Length = 194
Score = 177 bits (450), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 86/190 (45%), Positives = 131/190 (68%), Gaps = 2/190 (1%)
Query: 4 RYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFD 63
R A+VC SN NRSMEAH +L++ G V S+GT +HV+LPGP P VY+F T YK+M++
Sbjct: 7 RVAVVCVSNVNRSMEAHSILRKKGLSVRSFGTESHVRLPGPRPNRPVVYDFATTYKEMYN 66
Query: 64 DLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLN 123
DL RKD E Y RNGIL +L RN +K P+R+Q+ FD++FT EE V+DTVVEDL
Sbjct: 67 DLLRKDRECYTRNGILHILGRNERIKPGPERFQE--CTDFFDVIFTCEESVYDTVVEDLC 124
Query: 124 TREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQEIEAAESWEESIDDIIAAFEKRHR 183
+REQ + V VIN+E++D E+A +G L ++CQ ++ ++ E+++++++ E++
Sbjct: 125 SREQQTFQPVHVINMEIQDTLEDATLGAFLICEICQCLQQSDDMEDNLEELLLQMEEKAG 184
Query: 184 RKLLYSISFY 193
+ L+++ FY
Sbjct: 185 KSFLHTVCFY 194
>sp|Q6C195|SSU72_YARLI RNA polymerase II subunit A C-terminal domain phosphatase SSU72
OS=Yarrowia lipolytica (strain CLIB 122 / E 150)
GN=SSU72 PE=3 SV=1
Length = 193
Score = 174 bits (440), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 128/191 (67%), Gaps = 3/191 (1%)
Query: 4 RYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFD 63
+ VC+SNQNRSMEAH +LK GFDV SYGTG+ V+LPGP+ +PN+Y FGTPY +++
Sbjct: 5 KMCTVCASNQNRSMEAHKVLKEAGFDVESYGTGSAVRLPGPAYDKPNIYAFGTPYDDIYN 64
Query: 64 DLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLN 123
+L +D LY NG+L ML RN +K AP+RW ++ FD+VFT EE+ F+ V +DL
Sbjct: 65 ELSAQDERLYTANGLLTMLDRNRKIKTAPERWVEHK--NVFDVVFTCEERCFEAVCDDLM 122
Query: 124 TREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQEIEAAESWEESIDDIIAAFEKRH- 182
R + + V VIN++++DNHE++ IG + L + + ++ + I I+ +++++H
Sbjct: 123 DRGEKLQRPVHVINVDIRDNHEDSVIGAQGILKLARSLADSKDLDAQIMGIMDSWQEQHP 182
Query: 183 RRKLLYSISFY 193
+ L++++ ++
Sbjct: 183 KLPLMHAVGYF 193
>sp|A6NG73|S72L3_HUMAN Putative RNA polymerase II subunit A C-terminal domain phosphatase
SSU72-like protein 3 OS=Homo sapiens PE=3 SV=2
Length = 194
Score = 172 bits (436), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 86/190 (45%), Positives = 129/190 (67%), Gaps = 2/190 (1%)
Query: 4 RYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFD 63
R A+VC SN NRSMEAH +L+R G V S+GT +HV+LPG P VY+F T YK+M++
Sbjct: 7 RVAVVCVSNINRSMEAHSILRRKGLSVRSFGTESHVRLPGRRPNHPVVYDFATTYKEMYN 66
Query: 64 DLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLN 123
DL RKD E Y NGIL +L RN +K P+R+Q+ FD++FT EE+V+DTVVEDL
Sbjct: 67 DLLRKDRECYTHNGILHILGRNERIKPGPERFQE--CTEFFDVIFTCEERVYDTVVEDLC 124
Query: 124 TREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQEIEAAESWEESIDDIIAAFEKRHR 183
+REQ + V VIN+++KD E A +G L ++CQ ++ ++ E+S+++++ E++
Sbjct: 125 SREQQTFQPVHVINMDIKDTLEGAILGAFLICEICQCLQQSDDMEDSLEELLLQMEEKAG 184
Query: 184 RKLLYSISFY 193
+ L+++ FY
Sbjct: 185 KSFLHTVCFY 194
>sp|Q4IPC8|SSU72_GIBZE RNA polymerase II subunit A C-terminal domain phosphatase SSU72
OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC
9075 / NRRL 31084) GN=SSU72 PE=3 SV=1
Length = 255
Score = 171 bits (433), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 94/219 (42%), Positives = 126/219 (57%), Gaps = 39/219 (17%)
Query: 2 KYRYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFG-TPYKQ 60
K ++ VC+SN NRSMEAH L + + V S+GTG+ V+LPGP++ +PNVY F T Y
Sbjct: 24 KLKFCTVCASNNNRSMEAHLRLSQADYPVISFGTGSLVRLPGPTITQPNVYHFNKTSYDS 83
Query: 61 MFDDLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQD---------NALD--------GS 103
MF +L KD LYK NGIL ML RN GVK P+RWQD +A D G
Sbjct: 84 MFKELESKDARLYKNNGILNMLNRNRGVKWGPERWQDWQVGVPRLQHAKDRGSEGTEGGL 143
Query: 104 FDIVFTFEEKVFDTVVEDLNTREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQEIEA 163
DIV T EE+ +D VV+DL R P + V VIN+E+KDNHEEAA+GG+ DL + A
Sbjct: 144 VDIVITCEERCWDAVVDDLMNRGSPLNRPVHVINVEIKDNHEEAAVGGQGILDLANSLNA 203
Query: 164 A---------------------ESWEESIDDIIAAFEKR 181
A +++E + DI+A++++R
Sbjct: 204 AAREERDAVGASAFDNGSASSRATFDERVPDILASWQER 242
>sp|Q6FMU7|SSU72_CANGA RNA polymerase II subunit A C-terminal domain phosphatase SSU72
OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM
3761 / NBRC 0622 / NRRL Y-65) GN=SSU72 PE=3 SV=1
Length = 204
Score = 171 bits (432), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 88/199 (44%), Positives = 128/199 (64%), Gaps = 11/199 (5%)
Query: 4 RYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFD 63
++ VC+SN NRSME+H +L+ G++VSSYGTG+ V+LPG S +PNVY FGTPY +++
Sbjct: 8 KFCTVCASNNNRSMESHRILQEAGYEVSSYGTGSAVRLPGLSFDKPNVYPFGTPYNDIYN 67
Query: 64 DLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLN 123
DL + E YK NG+L ML RN +K AP++WQ+ +FD VFT EE+ FD V EDL
Sbjct: 68 DLLSQSAERYKANGLLQMLDRNRRLKKAPEKWQEGT--KTFDFVFTCEERCFDAVCEDLM 125
Query: 124 TREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQ-------EIEAAES-WEESIDDII 175
R K V VIN++++D++E A IGGR +L E E ++ +E+ I DI+
Sbjct: 126 NRGGRLNKIVHVINIDIRDDNENAKIGGRAILELANMLNEKVSECEQNDTLFEDCILDIL 185
Query: 176 AAFEKRH-RRKLLYSISFY 193
+++ H + LY+ S+Y
Sbjct: 186 TKWQEAHPQLPCLYAPSYY 204
>sp|P53538|SSU72_YEAST RNA polymerase II subunit A C-terminal domain phosphatase SSU72
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=SSU72 PE=1 SV=1
Length = 206
Score = 168 bits (425), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 87/199 (43%), Positives = 126/199 (63%), Gaps = 11/199 (5%)
Query: 4 RYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFD 63
++ VC+SN NRSME+H +L+ G++VSSYGTG+ V+LPG S+ +PNVY FGTPY +++
Sbjct: 10 KFCTVCASNNNRSMESHKVLQEAGYNVSSYGTGSAVRLPGLSIDKPNVYSFGTPYNDIYN 69
Query: 64 DLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLN 123
DL + + YK NG+L ML RN +K AP++WQ++ FD VFT EE+ FD V EDL
Sbjct: 70 DLLSQSADRYKSNGLLQMLDRNRRLKKAPEKWQEST--KVFDFVFTCEERCFDAVCEDLM 127
Query: 124 TREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLC----QEIEAAES----WEESIDDII 175
R K V VIN+++KD+ E A IG + +L +IE E +E+ I DI+
Sbjct: 128 NRGGKLNKIVHVINVDIKDDDENAKIGSKAILELADMLNDKIEQCEKDDIPFEDCIMDIL 187
Query: 176 AAFEKRHRR-KLLYSISFY 193
++ H + LY+ S+Y
Sbjct: 188 TEWQSSHSQLPSLYAPSYY 206
>sp|P0CR76|SSU72_CRYNJ RNA polymerase II subunit A C-terminal domain phosphatase SSU72
OS=Cryptococcus neoformans var. neoformans serotype D
(strain JEC21 / ATCC MYA-565) GN=SSU72 PE=3 SV=1
Length = 187
Score = 163 bits (412), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 78/172 (45%), Positives = 114/172 (66%), Gaps = 3/172 (1%)
Query: 23 LKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFDDLRRKDPELYKRNGILPML 82
+ ++ F V S GTG+ V+LPGP++ +PNVY FGTPY ++ DL +DP+LY RNGILPML
Sbjct: 18 ITKNSFRVVSAGTGSAVRLPGPAIDKPNVYRFGTPYDDIYRDLESQDPQLYTRNGILPML 77
Query: 83 KRNIGVKAAPQRWQDNALDGSF-DIVFTFEEKVFDTVVEDLNTREQPFMKTVLVINLEVK 141
RN VK AP++WQ+ L D+V T EE+ +D V +DL TR + + + +IN+E+K
Sbjct: 78 DRNRKVKKAPEKWQE--LKSVLADVVITCEERCYDAVCDDLLTRSGEYNRPIHIINIEIK 135
Query: 142 DNHEEAAIGGRLTFDLCQEIEAAESWEESIDDIIAAFEKRHRRKLLYSISFY 193
DN EEA I G+ +L + IEA++ + ID I+ A +H LL+++ FY
Sbjct: 136 DNPEEAHIAGQSILELARAIEASDDLDSDIDAILNAHGDKHPHTLLHTVGFY 187
>sp|P0CR77|SSU72_CRYNB RNA polymerase II subunit A C-terminal domain phosphatase SSU72
OS=Cryptococcus neoformans var. neoformans serotype D
(strain B-3501A) GN=SSU72 PE=3 SV=1
Length = 187
Score = 163 bits (412), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 78/172 (45%), Positives = 114/172 (66%), Gaps = 3/172 (1%)
Query: 23 LKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFDDLRRKDPELYKRNGILPML 82
+ ++ F V S GTG+ V+LPGP++ +PNVY FGTPY ++ DL +DP+LY RNGILPML
Sbjct: 18 ITKNSFRVVSAGTGSAVRLPGPAIDKPNVYRFGTPYDDIYRDLESQDPQLYTRNGILPML 77
Query: 83 KRNIGVKAAPQRWQDNALDGSF-DIVFTFEEKVFDTVVEDLNTREQPFMKTVLVINLEVK 141
RN VK AP++WQ+ L D+V T EE+ +D V +DL TR + + + +IN+E+K
Sbjct: 78 DRNRKVKKAPEKWQE--LKSVLADVVITCEERCYDAVCDDLLTRSGEYNRPIHIINIEIK 135
Query: 142 DNHEEAAIGGRLTFDLCQEIEAAESWEESIDDIIAAFEKRHRRKLLYSISFY 193
DN EEA I G+ +L + IEA++ + ID I+ A +H LL+++ FY
Sbjct: 136 DNPEEAHIAGQSILELARAIEASDDLDSDIDAILNAHGDKHPHTLLHTVGFY 187
>sp|Q6CQ61|SSU72_KLULA RNA polymerase II subunit A C-terminal domain phosphatase SSU72
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=SSU72
PE=3 SV=1
Length = 207
Score = 162 bits (411), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 82/199 (41%), Positives = 124/199 (62%), Gaps = 11/199 (5%)
Query: 4 RYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFD 63
++ VC+SN NRSME+H +L+ G+DVSSYGTG+ V+LPG S+ +PNVY FGTPY +++
Sbjct: 11 KFCTVCASNNNRSMESHRVLEEAGYDVSSYGTGSAVRLPGLSIDKPNVYSFGTPYDDIYN 70
Query: 64 DLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLN 123
DL + + YK+NG+L ML RN +K AP++W D FD VFT EE+ FD+V EDL
Sbjct: 71 DLISQSEDRYKQNGVLEMLDRNRKLKKAPEKWHDGR--KVFDFVFTCEERCFDSVCEDLM 128
Query: 124 TREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQEI--------EAAESWEESIDDII 175
R +IN+++KD++E A IGGR L + + +E+ I D+
Sbjct: 129 NRGGQLNLIAHIINIDIKDDNENAKIGGRAILRLADMLRDKVFECEKNGTQFEDFIMDVF 188
Query: 176 AAFEKRH-RRKLLYSISFY 193
+++++ + L YS ++Y
Sbjct: 189 TEWQEKYPKLPLTYSAAYY 207
>sp|Q7SFY0|SSU72_NEUCR RNA polymerase II subunit A C-terminal domain phosphatase ssu-72
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=ssu-72 PE=3 SV=1
Length = 266
Score = 160 bits (406), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 80/178 (44%), Positives = 110/178 (61%), Gaps = 18/178 (10%)
Query: 2 KYRYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFG-TPYKQ 60
K ++ VC+SNQNRSME H L + V S+GTG+ V+LPGPS+ +PNVY+F T Y
Sbjct: 35 KLKFCTVCASNQNRSMEGHLRLSLANYPVISFGTGSLVRLPGPSITQPNVYKFNETSYDS 94
Query: 61 MFDDLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQD----------------NALDGSF 104
++ +L KDP LY+ NG+L ML RN VK P+RWQD + ++G
Sbjct: 95 IYRELEAKDPRLYRANGLLNMLGRNRQVKWGPERWQDWQIGMPRTKHKDDKGADGMEGGV 154
Query: 105 -DIVFTFEEKVFDTVVEDLNTREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQEI 161
D+V T EE+ +D V+EDL R P + V VIN+++KDNHEEA++GGR DL +
Sbjct: 155 ADVVITCEERCWDAVIEDLLNRGSPLNRPVHVINIDIKDNHEEASVGGRAIVDLADSL 212
>sp|Q6BYP7|SSU72_DEBHA RNA polymerase II subunit A C-terminal domain phosphatase SSU72
OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 /
JCM 1990 / NBRC 0083 / IGC 2968) GN=SSU72 PE=3 SV=2
Length = 223
Score = 155 bits (393), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 80/217 (36%), Positives = 129/217 (59%), Gaps = 27/217 (12%)
Query: 4 RYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFD 63
+ VC++N NRSME+H LK G++V S+GTG+ V+LPGPS+ +PNVYEFGTPY ++
Sbjct: 7 KICTVCAANNNRSMESHKQLKDAGYNVRSFGTGSAVRLPGPSVDKPNVYEFGTPYDDIYR 66
Query: 64 DLRRKD-PELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDL 122
DL ++ ++Y+ NG++ M+ RN +K AP++W +NA G FD+V T EE+ FD V++DL
Sbjct: 67 DLTSQEYHKMYESNGLIRMINRNRHIKRAPEKWHNNASAGKFDLVITCEERCFDLVLDDL 126
Query: 123 NTR-------EQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQEI-------------- 161
R + + V +IN+++KD++E A IGG+ L I
Sbjct: 127 MVRLVNKDQADTEIKQAVHIINIDIKDDYENAVIGGKGILKLVNMIHEFRNTNKQRRLDH 186
Query: 162 ----EAAESWEESIDDIIAAFEKRHRR-KLLYSISFY 193
E+ E+ + ++A +++ H LYS+++Y
Sbjct: 187 DFDDESDTILEDQMMKLLAKWQQEHTHLPTLYSVAYY 223
>sp|Q2HFZ9|SSU72_CHAGB RNA polymerase II subunit A C-terminal domain phosphatase SSU72
OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 /
DSM 1962 / NBRC 6347 / NRRL 1970) GN=SSU72 PE=3 SV=1
Length = 257
Score = 154 bits (390), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 78/181 (43%), Positives = 109/181 (60%), Gaps = 18/181 (9%)
Query: 2 KYRYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFG-TPYKQ 60
K ++ VC+SNQNRSME H L + + V S+GTG+ V+LPGP++ +PNVY+F T Y
Sbjct: 26 KLKFCTVCASNQNRSMEGHLRLAQANYPVISFGTGSLVRLPGPTITQPNVYKFNETSYDS 85
Query: 61 MFDDLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALD-----------------GS 103
++ +L KDP LY+ NG+L ML RN +K P+RWQD + G
Sbjct: 86 IYRELEAKDPRLYRANGLLNMLGRNRVIKWGPERWQDWQVGMPRVKHEKDQGSIGMEAGV 145
Query: 104 FDIVFTFEEKVFDTVVEDLNTREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQEIEA 163
DIV T EE+ +D VV+DL R P + V VIN+++KDNH++A+IGG DL +
Sbjct: 146 PDIVITCEERCWDAVVDDLLNRGSPLNRPVHVINIDIKDNHQDASIGGGAMVDLADSLNR 205
Query: 164 A 164
A
Sbjct: 206 A 206
>sp|Q4WHY5|SSU72_ASPFU RNA polymerase II subunit A C-terminal domain phosphatase ssu72
OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 /
CBS 101355 / FGSC A1100) GN=ssu72 PE=3 SV=1
Length = 287
Score = 150 bits (378), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 84/212 (39%), Positives = 120/212 (56%), Gaps = 32/212 (15%)
Query: 2 KYRYAMVCSSNQNRSMEAHYLLKR--HGFDVSSYGTGAHVKLPGPSLREPNVYEFGT-PY 58
K ++ VC+SNQNRSMEAH L F V S+GTG+ V+LPGPS+ +PNVY F T Y
Sbjct: 52 KLKFCTVCASNQNRSMEAHLRLSTAPSPFPVISFGTGSLVRLPGPSITQPNVYNFNTTSY 111
Query: 59 KQMFDDLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQD----------------NALD- 101
QM+D+L KD LY+ NG+L ML RN +K P+R+QD AL
Sbjct: 112 SQMYDELLAKDERLYRNNGLLNMLDRNRNLKWGPERFQDWVPGMPRVDHVSKGDKGALGT 171
Query: 102 --GSFDIVFTFEEKVFDTVVEDLNTREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLC- 158
G+ D++ T EE+ +D VV+DL + + V V N++++DNHEEA +GG+ +L
Sbjct: 172 EGGTVDVIITCEERCWDAVVDDLMNKGAALNRPVHVFNVDIRDNHEEALVGGKAILELAT 231
Query: 159 ---------QEIEAAESWEESIDDIIAAFEKR 181
++I AE WE + +F++R
Sbjct: 232 RLNDAATQERKIHGAEGWENGNGEARRSFDER 263
>sp|Q2UPU5|SSU72_ASPOR RNA polymerase II subunit A C-terminal domain phosphatase ssu72
OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40)
GN=ssu72 PE=3 SV=1
Length = 262
Score = 147 bits (370), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 89/235 (37%), Positives = 128/235 (54%), Gaps = 44/235 (18%)
Query: 2 KYRYAMVCSSNQNRSMEAHYLLKR--HGFDVSSYGTGAHVKLPGPSLREPNVYEFGT-PY 58
K R+ VC+SNQNRSMEAH L F V S+GTG+ V+LPGPS+ +PNVY F T Y
Sbjct: 27 KLRFCTVCASNQNRSMEAHLRLSTAPSPFPVISFGTGSLVRLPGPSITQPNVYNFNTTSY 86
Query: 59 KQMFDDLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQD----------------NALD- 101
QM+++L KD LY+ NG+L ML+RN +K P+R+QD AL
Sbjct: 87 SQMYEELYSKDERLYRNNGLLNMLERNRNLKWGPERFQDWVPGMPRVDHVAKGDKGALGT 146
Query: 102 --GSFDIVFTFEEKVFDTVVEDLNTREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQ 159
G D++ T EE+ +D VV+DL + + V V N+++KDNHEEA +GG+ +L
Sbjct: 147 EGGVVDVIITCEERCWDAVVDDLMNKGSLLNRPVHVFNVDIKDNHEEALVGGKAILELAN 206
Query: 160 EIEAA----------ESWE-----------ESIDDIIAAF-EKRHRRKLLYSISF 192
+ A E WE E + +I+AA+ EK L+++++
Sbjct: 207 RLNEAAVQERKANNSEGWENGTGEARRSFDEKVPEILAAWQEKWPNLPALWTLAW 261
>sp|Q6KYZ5|ARGC_PICTO N-acetyl-gamma-glutamyl-phosphate reductase OS=Picrophilus torridus
(strain ATCC 700027 / DSM 9790 / JCM 10055 / NBRC
100828) GN=argC PE=3 SV=1
Length = 347
Score = 32.7 bits (73), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 49 PNVYEFGTPYKQMFDDLRRKDPELYK 74
P++YE GT M D R KDP+LY+
Sbjct: 85 PDIYEIGTKIIDMSADFRLKDPDLYR 110
>sp|P09152|NARG_ECOLI Respiratory nitrate reductase 1 alpha chain OS=Escherichia coli
(strain K12) GN=narG PE=1 SV=4
Length = 1247
Score = 32.0 bits (71), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 82 LKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVV 119
L + GVK WQDN L+G D+V T + ++ T +
Sbjct: 744 LGQQGGVKPEEVDWQDNGLEGKLDLVVTLDFRLSSTCL 781
>sp|Q55AP1|GRLA_DICDI Metabotropic glutamate receptor-like protein A OS=Dictyostelium
discoideum GN=grlA PE=2 SV=1
Length = 798
Score = 30.8 bits (68), Expect = 6.4, Method: Composition-based stats.
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 2 KYRYAMVCSSNQNRSMEAHYLLKRHG 27
KY+YA VCSSN S+ + LL HG
Sbjct: 530 KYQYANVCSSNDQGSVALYILLVFHG 555
>sp|P34404|YLW1_CAEEL Uncharacterized protein F22B7.1 OS=Caenorhabditis elegans
GN=F22B7.1 PE=4 SV=1
Length = 348
Score = 30.0 bits (66), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
Query: 114 VFDTVVEDLNT-----REQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQEIEAAESWE 168
V D ED T +++ + K VI+ +VK N E + GR+ L Q I+ E ++
Sbjct: 81 VLDLPTEDRETLKAYVKDKTYEKLKYVIDSKVKMNRNEKNVLGRINESLVQSIDNLEHFD 140
Query: 169 ESIDDIIAAF 178
E D++ +
Sbjct: 141 EITVDVVNGY 150
>sp|B0S169|SYT_FINM2 Threonine--tRNA ligase OS=Finegoldia magna (strain ATCC 29328)
GN=thrS PE=3 SV=1
Length = 634
Score = 30.0 bits (66), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 43 GPSLREPNVYEFGTPYKQMFDDLRRKDPELYKRNGILPMLKR-NIGVKAAPQRWQDNALD 101
GPS+ Y+ T +K + +DL + + E+ K P L R I K A +R+++ D
Sbjct: 95 GPSIDSGFYYDLDTDHKFVPEDLEKIEAEMKKIVKENPKLVRVEISRKEALERFKNEGQD 154
Query: 102 GSFDIVFTFEEKVFDTVVE 120
D++ F+E T+ E
Sbjct: 155 YKVDLIENFDEDATITLYE 173
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.137 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,042,064
Number of Sequences: 539616
Number of extensions: 3294962
Number of successful extensions: 7270
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 7205
Number of HSP's gapped (non-prelim): 34
length of query: 193
length of database: 191,569,459
effective HSP length: 111
effective length of query: 82
effective length of database: 131,672,083
effective search space: 10797110806
effective search space used: 10797110806
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)