Query 029442
Match_columns 193
No_of_seqs 127 out of 534
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 12:59:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029442.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029442hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03018 Dirigent: Dirigent-li 100.0 4.1E-53 8.8E-58 338.2 18.6 143 48-192 1-144 (144)
2 PF06351 Allene_ox_cyc: Allene 97.8 0.0016 3.5E-08 53.2 14.9 120 46-178 4-128 (176)
3 PLN02343 allene oxide cyclase 97.3 0.015 3.3E-07 49.3 14.6 124 44-178 52-179 (229)
4 PF11528 DUF3224: Protein of u 51.8 1.2E+02 0.0026 24.0 10.2 87 100-192 39-133 (134)
5 PF06692 MNSV_P7B: Melon necro 31.4 61 0.0013 22.3 2.8 18 12-29 18-35 (61)
6 KOG1692 Putative cargo transpo 22.8 3.7E+02 0.008 23.0 6.6 66 123-193 43-115 (201)
7 PF08239 SH3_3: Bacterial SH3 21.0 79 0.0017 20.0 1.9 16 92-107 4-19 (55)
8 PF01715 IPPT: IPP transferase 20.9 41 0.00088 29.1 0.6 13 152-164 56-69 (253)
9 COG2372 CopC Uncharacterized p 19.5 4.5E+02 0.0098 20.8 6.2 42 32-74 29-70 (127)
10 PF05984 Cytomega_UL20A: Cytom 18.3 1.5E+02 0.0033 22.2 3.0 45 1-50 1-45 (100)
No 1
>PF03018 Dirigent: Dirigent-like protein; InterPro: IPR004265 This family contains a number of proteins which are induced during disease response in plants.
Probab=100.00 E-value=4.1e-53 Score=338.17 Aligned_cols=143 Identities=54% Similarity=0.867 Sum_probs=134.8
Q ss_pred ceeEEEEEeeecCCCCCccEEEeecccccCCCCCccceEEEeecccccCCCCCCcceeeEEEEEEEecCCCceEEEEEEE
Q 029442 48 KLSHLHFYFHDIVGGPNTTTVRVAQAAMTNTSSTFFGAVVMMDDPLTIQPELSSKLVGRAQGIYASASLSELGFLMVMNF 127 (193)
Q Consensus 48 k~t~l~fY~Hd~~sg~n~t~~~v~~~~~~~~~~~~FG~~~V~Dd~lteGp~~~Sk~VGrAQG~~~~~s~~~~~~~~~~~~ 127 (193)
|++||+|||||+++|||+|+++|++++.++. .+||+++|+||||||||+++||+||||||+|+.+++++.+|++++++
T Consensus 1 ~~t~l~fY~H~~~~g~n~t~~~v~~~~~~~~--~~FG~~~V~D~~lt~gp~~~S~~VGraqG~~~~~s~~~~~~~~~~~~ 78 (144)
T PF03018_consen 1 KETHLHFYMHDIVSGPNPTAVVVAEPPGPSS--SGFGTVVVFDDPLTEGPDPDSKLVGRAQGFYVSASLDGSSWFMSFTL 78 (144)
T ss_pred CceEEEEEeeecCCCCCCCEEEeccCCCCCC--CCCcEEEEEeeceEcCCCCCCccceEEEEEEEeecccCccEEEEEEE
Confidence 6799999999999999999999998865432 39999999999999999999999999999999999999999999999
Q ss_pred EeccCcccCcEEEEecccCCCCCceeeEEEeccccccceeEEEEEEEE-eeCCCCcEEEEEEEEEe
Q 029442 128 AFTEGKYNGSTLSVLGRNTPLSTVREMPIVGGSGLFRFARGYAQARTH-TIDSEVAVVEYNVYVFH 192 (193)
Q Consensus 128 vF~~g~y~GStl~v~G~~~~~~~~rE~~VVGGTG~Fr~ArGya~~~t~-~~~~~~~i~e~~v~v~h 192 (193)
+|++++||||||+++|+++..+++||||||||||+|||||||++++++ +.+..++|+||||||+|
T Consensus 79 vF~~g~~~GStl~v~G~~~~~~~~~e~~VVGGTG~Fr~ArG~~~~~~~~~~~~~~~v~e~~v~~~h 144 (144)
T PF03018_consen 79 VFEDGEYNGSTLSVMGRDPFFEPVRELAVVGGTGEFRMARGYAKLRTVFDSSGGNAVLELNVHLFH 144 (144)
T ss_pred EEEecccCCCeEEEeCCCcccCcccEEeEecCCCeEcceEEEEEEEEEeecCCCCEEEEEEEEEEC
Confidence 999999999999999999999999999999999999999999999999 55555999999999998
No 2
>PF06351 Allene_ox_cyc: Allene oxide cyclase; InterPro: IPR009410 This family consists of several plant specific allene oxide cyclase proteins (5.3.99.6 from EC). The allene oxide cyclase (AOC)-catalysed step in jasmonate (JA) biosynthesis is important in the wound response of tomato [].; GO: 0016853 isomerase activity, 0009507 chloroplast; PDB: 2GIN_A 2DIO_B 2BRJ_B 2Q4I_B 1Z8K_A 1ZVC_A.
Probab=97.81 E-value=0.0016 Score=53.19 Aligned_cols=120 Identities=22% Similarity=0.335 Sum_probs=74.1
Q ss_pred CCceeEEEEE-eeecCCCCCccEEEeecccccCCCCCccceEEEeecccccCCCCCCcceeeEEEEEEEecC----CCce
Q 029442 46 REKLSHLHFY-FHDIVGGPNTTTVRVAQAAMTNTSSTFFGAVVMMDDPLTIQPELSSKLVGRAQGIYASASL----SELG 120 (193)
Q Consensus 46 ~~k~t~l~fY-~Hd~~sg~n~t~~~v~~~~~~~~~~~~FG~~~V~Dd~lteGp~~~Sk~VGrAQG~~~~~s~----~~~~ 120 (193)
+.|...|++| +.+.-.+ .|.-+++-+ +.....|+.+=+.|+|.+|.- .+-+|--+|+-+.-.. .+-.
T Consensus 4 p~kvqel~vyeiNErdR~-SPa~L~ls~-----k~~nslGDlvpFsNklY~g~l--~~rlGitaG~Cvliq~~p~k~Gdr 75 (176)
T PF06351_consen 4 PTKVQELSVYEINERDRG-SPAYLRLSQ-----KSVNSLGDLVPFSNKLYDGDL--QKRLGITAGICVLIQHVPEKKGDR 75 (176)
T ss_dssp ----EEEEEEEE--S-S---S--B--SS-----SSSS-TT-EEEEEEEEEETTS--S-EEEEEEEEEEEEEEECCCTEEE
T ss_pred ccceEEEEEEEEcccccC-CCcEEEccc-----ccchhcccccccccccccchh--hhhhcccceEEEEEEeccccCCce
Confidence 4566678888 4443222 233333322 234569999999999999976 7899999999775432 2223
Q ss_pred EEEEEEEEeccCcccCcEEEEecccCCCCCceeeEEEeccccccceeEEEEEEEEeeC
Q 029442 121 FLMVMNFAFTEGKYNGSTLSVLGRNTPLSTVREMPIVGGSGLFRFARGYAQARTHTID 178 (193)
Q Consensus 121 ~~~~~~~vF~~g~y~GStl~v~G~~~~~~~~rE~~VVGGTG~Fr~ArGya~~~t~~~~ 178 (193)
+=-.+++.|-+ | | .|+++|..... +..-++|.||||-|+.|+|-++++..-+.
T Consensus 76 yEaiySfyfGd--y-G-hISvqGpy~t~-eDtyLAVTGGtGiF~g~~GqVkL~qivfP 128 (176)
T PF06351_consen 76 YEAIYSFYFGD--Y-G-HISVQGPYLTY-EDTYLAVTGGTGIFEGVYGQVKLHQIVFP 128 (176)
T ss_dssp EEEEEEEE-GG--G-E-EEEEEEEEETT-S-EEEEEEEEEETTTT-EEEEEEEEEETT
T ss_pred EEEEEEEEecc--c-c-eEEEecccccc-cceeEEEeccCceeecceEEEEEEEeecc
Confidence 33456777743 3 4 79999987543 56789999999999999999999887653
No 3
>PLN02343 allene oxide cyclase
Probab=97.31 E-value=0.015 Score=49.31 Aligned_cols=124 Identities=19% Similarity=0.278 Sum_probs=84.7
Q ss_pred CCCCceeEEEEEeeecCCCCCccEEEeecccccCCCCCccceEEEeecccccCCCCCCcceeeEEEEEEEecC----CCc
Q 029442 44 LKREKLSHLHFYFHDIVGGPNTTTVRVAQAAMTNTSSTFFGAVVMMDDPLTIQPELSSKLVGRAQGIYASASL----SEL 119 (193)
Q Consensus 44 ~~~~k~t~l~fY~Hd~~sg~n~t~~~v~~~~~~~~~~~~FG~~~V~Dd~lteGp~~~Sk~VGrAQG~~~~~s~----~~~ 119 (193)
.++.|...|.+|=-+-.....|.-.+..+.+ .....|+++=|.++|++|.- .|.+|--.|+-+.-.. .+-
T Consensus 52 ~~p~kvQel~VYEiNErDR~SPa~L~ls~k~----~~~sLGDlVPFsNKlY~g~L--~kRlGiTaG~Cvliq~~pek~gD 125 (229)
T PLN02343 52 PRPTKVQELSVYEINERDRGSPAFLKLSKKS----VENALGDLVPFTNKLYTGDL--KKRLGITAGLCVLIQHVPEKKGD 125 (229)
T ss_pred CCCceeEEEEEEEeccccCCCcceEEcccCc----ccccccceeccccccccchh--hhhhcccceeEEEEEeccccCCc
Confidence 3456777777773222222223333433322 22568999999999999854 6789999998775443 233
Q ss_pred eEEEEEEEEeccCcccCcEEEEecccCCCCCceeeEEEeccccccceeEEEEEEEEeeC
Q 029442 120 GFLMVMNFAFTEGKYNGSTLSVLGRNTPLSTVREMPIVGGSGLFRFARGYAQARTHTID 178 (193)
Q Consensus 120 ~~~~~~~~vF~~g~y~GStl~v~G~~~~~~~~rE~~VVGGTG~Fr~ArGya~~~t~~~~ 178 (193)
.+=-.+++.|- +| | .|+|+|....- +..-++|.||+|-|..|+|-+++..+-+.
T Consensus 126 ryEa~ySfyfG--Dy-G-HisvqGpylty-eDt~LaiTGGsGiFega~GqvkL~qivfP 179 (229)
T PLN02343 126 RYEAIYSFYFG--DY-G-HISVQGPYLTY-EDTYLAITGGSGIFEGAYGQVKLHQIVFP 179 (229)
T ss_pred eeEEEEEEEec--Cc-c-eeEEecccccc-ccceEEeecCcceeecceeEEEEeeeeee
Confidence 45556777784 44 4 69999987543 45689999999999999999999877653
No 4
>PF11528 DUF3224: Protein of unknown function (DUF3224); InterPro: IPR021607 This bacterial family of proteins has no known function. ; PDB: 2OOJ_B 2Q03_B.
Probab=51.75 E-value=1.2e+02 Score=24.01 Aligned_cols=87 Identities=15% Similarity=0.155 Sum_probs=50.7
Q ss_pred CCcceeeEEEEEEEecC-CCceEEEEEE---EEeccCcccCcEEEEecc--cCCCCCceeeEEE--eccccccceeEEEE
Q 029442 100 SSKLVGRAQGIYASASL-SELGFLMVMN---FAFTEGKYNGSTLSVLGR--NTPLSTVREMPIV--GGSGLFRFARGYAQ 171 (193)
Q Consensus 100 ~Sk~VGrAQG~~~~~s~-~~~~~~~~~~---~vF~~g~y~GStl~v~G~--~~~~~~~rE~~VV--GGTG~Fr~ArGya~ 171 (193)
+-.+.|++++-|+.+-. ++...++.+. -.+. | -+|| +.++-. ........+|-|| -|||++...+|-..
T Consensus 39 ~G~l~Gts~~~~L~~y~~~g~a~yva~E~~~Gtl~-G-r~Gs-Fvl~h~G~~~~g~~~~~~~VVPgSGTGeL~Gl~Gsg~ 115 (134)
T PF11528_consen 39 SGDLEGTSTGEYLMAYDPDGSAGYVAFERFTGTLD-G-RSGS-FVLQHSGTFDAGTASSSFTVVPGSGTGELAGLSGSGT 115 (134)
T ss_dssp -TTEEEEEEEEEEEEEECTTEEEEEEEEEEEEEET-T-EEEE-EEEEEEEEEETTEEEEEEEE-TT--EETTTTEEEEEE
T ss_pred EeEEEEEEEEEEEEEEcCCCcEEEEEEEEEEEEEC-C-ceEE-EEEEEEEEEcCCcceEEEEEeCCCCchhhcCCEEEEE
Confidence 34578888888876654 3444444433 2232 2 2563 555543 2222235689999 99999999999998
Q ss_pred EEEEeeCCCCcEEEEEEEEEe
Q 029442 172 ARTHTIDSEVAVVEYNVYVFH 192 (193)
Q Consensus 172 ~~t~~~~~~~~i~e~~v~v~h 192 (193)
++... ....++|+..+.+
T Consensus 116 ~~~~~---g~h~y~f~y~l~d 133 (134)
T PF11528_consen 116 ITIDE---GQHAYDFEYTLPD 133 (134)
T ss_dssp EEEET---TCEEEEEEEEEEE
T ss_pred EEECC---CCceeeEEEECCC
Confidence 86554 3346677776643
No 5
>PF06692 MNSV_P7B: Melon necrotic spot virus P7B protein; InterPro: IPR009575 This family consists of several Melon necrotic spot virus (MNSV) P7B proteins. The function of this family is unknown.
Probab=31.42 E-value=61 Score=22.34 Aligned_cols=18 Identities=28% Similarity=0.432 Sum_probs=7.9
Q ss_pred HHHHHHHHhhhheeeccC
Q 029442 12 LFLVLSISLTLLTITKAK 29 (193)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~ 29 (193)
|.|.+++.+++|++..++
T Consensus 18 Liliis~~f~lI~~l~qq 35 (61)
T PF06692_consen 18 LILIISFVFFLITSLGQQ 35 (61)
T ss_pred HHHHHHHHHHHHhhhccC
Confidence 333344555555333333
No 6
>KOG1692 consensus Putative cargo transport protein EMP24 (p24 protein family) [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.75 E-value=3.7e+02 Score=22.97 Aligned_cols=66 Identities=18% Similarity=0.308 Sum_probs=41.8
Q ss_pred EEEEEEeccCcccCcEEEEecccC--CCCCceeeEEEeccccccceeEEEEEEEEeeCCC-----CcEEEEEEEEEeC
Q 029442 123 MVMNFAFTEGKYNGSTLSVLGRNT--PLSTVREMPIVGGSGLFRFARGYAQARTHTIDSE-----VAVVEYNVYVFHY 193 (193)
Q Consensus 123 ~~~~~vF~~g~y~GStl~v~G~~~--~~~~~rE~~VVGGTG~Fr~ArGya~~~t~~~~~~-----~~i~e~~v~v~hy 193 (193)
+..++++.+|.+.|=.+.|.|.+. +.+.++|-+ |+|.|+-=.--.-+.++... -.++-++|++-||
T Consensus 43 ~~vsF~v~~gg~~~vd~~I~gP~~~~i~~~~~~ss-----gk~tF~a~~~G~Y~fCF~N~~s~mtpk~V~F~ihvg~~ 115 (201)
T KOG1692|consen 43 LSVSFEVIDGGFLGVDVEITGPDGKIIHKGKRESS-----GKYTFTAPKKGTYTFCFSNKMSTMTPKTVMFTIHVGHA 115 (201)
T ss_pred EEEEEEEecCCccceeEEEECCCCchhhhcccccC-----ceEEEEecCCceEEEEecCCCCCCCceEEEEEEEEeec
Confidence 345555666777777788888653 234455543 78877654444445566433 4789999998875
No 7
>PF08239 SH3_3: Bacterial SH3 domain; InterPro: IPR013247 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. A homologue of the SH3 domain has been found in a number of different bacterial proteins including glycyl-glycine endopeptidase, bacteriocin and some hypothetical proteins.; PDB: 3PVQ_B 3NPF_B 3H41_A 2KQ8_A 2KRS_A 2KYB_A 2KT8_A.
Probab=20.99 E-value=79 Score=19.95 Aligned_cols=16 Identities=19% Similarity=0.391 Sum_probs=13.3
Q ss_pred ccccCCCCCCcceeeE
Q 029442 92 PLTIQPELSSKLVGRA 107 (193)
Q Consensus 92 ~lteGp~~~Sk~VGrA 107 (193)
.|+.+|+.+|+.++.+
T Consensus 4 nvR~~p~~~s~~i~~l 19 (55)
T PF08239_consen 4 NVRSGPSTNSPVIGQL 19 (55)
T ss_dssp EEESSSSTTSTEEEEE
T ss_pred EEEeCCCCCChhhEEE
Confidence 4678899999999885
No 8
>PF01715 IPPT: IPP transferase; InterPro: IPR002627 tRNA isopentenyltransferases 2.5.1.8 from EC also known as tRNA delta(2)-isopentenylpyrophosphate transferases or IPP transferases. These enzymes modify both cytoplasmic and mitochondrial tRNAs at A(37) to give isopentenyl A(37) [].; GO: 0005524 ATP binding, 0008033 tRNA processing; PDB: 2ZXU_A 3FOZ_A 2ZM5_B 3D3Q_A 3EXA_B 2QGN_A 3A8T_A 3EPK_B 3EPH_A 3EPJ_A ....
Probab=20.88 E-value=41 Score=29.08 Aligned_cols=13 Identities=54% Similarity=1.170 Sum_probs=8.1
Q ss_pred eeeEE-Eecccccc
Q 029442 152 REMPI-VGGSGLFR 164 (193)
Q Consensus 152 rE~~V-VGGTG~Fr 164 (193)
..+|| |||||-|-
T Consensus 56 gk~PIlvGGTglYi 69 (253)
T PF01715_consen 56 GKIPILVGGTGLYI 69 (253)
T ss_dssp T-EEEEEES-HHHH
T ss_pred CCeEEEECChHHHH
Confidence 45666 99999764
No 9
>COG2372 CopC Uncharacterized protein, homolog of Cu resistance protein CopC [General function prediction only]
Probab=19.51 E-value=4.5e+02 Score=20.83 Aligned_cols=42 Identities=10% Similarity=0.207 Sum_probs=25.9
Q ss_pred ceeeecCCCccCCCCCceeEEEEEeeecCCCCCccEEEeeccc
Q 029442 32 SFSRTLTPSSLGLKREKLSHLHFYFHDIVGGPNTTTVRVAQAA 74 (193)
Q Consensus 32 ~~~~~~~~~~~~~~~~k~t~l~fY~Hd~~sg~n~t~~~v~~~~ 74 (193)
.|..+..|.....-.+-+-.+++++-|.+. ++=+.+.+.++.
T Consensus 29 a~l~~s~Pad~s~v~aaP~~i~L~Fse~ve-~~fs~~~l~~~d 70 (127)
T COG2372 29 AYLVSSNPADNSVVTAAPAAITLEFSEGVE-PGFSGAKLTGPD 70 (127)
T ss_pred eeeecCCCCCcchhhcCceeEEEecCCccC-CCcceeEEECCC
Confidence 455555554433334556688899998875 333566666664
No 10
>PF05984 Cytomega_UL20A: Cytomegalovirus UL20A protein; InterPro: IPR009245 This family consists of several Cytomegalovirus UL20A proteins. UL20A is thought to be a glycoprotein [].
Probab=18.27 E-value=1.5e+02 Score=22.15 Aligned_cols=45 Identities=18% Similarity=0.271 Sum_probs=0.0
Q ss_pred CcchhhhhHHHHHHHHHHHhhhheeeccCccceeeecCCCccCCCCCcee
Q 029442 1 MAKSFQKLHYSLFLVLSISLTLLTITKAKTNSFSRTLTPSSLGLKREKLS 50 (193)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~t 50 (193)
|+.|.. ++-+|+..||+.++++.+-..-.-+....+.....++.|
T Consensus 1 MaRRlw-----iLslLAVtLtVALAAPsQKsKRSVtveqPsts~n~dntT 45 (100)
T PF05984_consen 1 MARRLW-----ILSLLAVTLTVALAAPSQKSKRSVTVEQPSTSTNGDNTT 45 (100)
T ss_pred CchhhH-----HHHHHHHHHHHHhhccccccccceeecCCccccCCCCcc
Done!