Query 029442
Match_columns 193
No_of_seqs 127 out of 534
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 21:22:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029442.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029442hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2brj_A Arabidopsis thaliana ge 98.8 3.8E-07 1.3E-11 74.1 15.5 130 46-191 13-147 (188)
2 4h6b_A Allene oxide cyclase; B 98.5 6E-06 2E-10 67.4 16.7 135 45-190 13-154 (195)
3 3h6j_A Neuraminidase, sialidas 21.2 63 0.0021 27.7 3.1 55 118-174 372-436 (438)
4 2xdp_A Lysine-specific demethy 15.0 2.2E+02 0.0074 21.3 4.5 57 79-155 63-119 (123)
5 2krs_A Probable enterotoxin; a 14.4 71 0.0024 21.0 1.5 16 92-107 12-27 (74)
6 2kt8_A Probable surface protei 13.0 1.3E+02 0.0044 19.9 2.5 16 92-107 14-29 (76)
7 2kq8_A Cell WALL hydrolase; GF 12.6 62 0.0021 21.0 0.8 16 92-107 13-28 (70)
8 2qqr_A JMJC domain-containing 12.2 1.9E+02 0.0064 21.5 3.4 57 79-155 62-118 (118)
9 2ooj_A Hypothetical protein; s 10.6 5.4E+02 0.018 19.3 12.1 73 100-175 40-121 (141)
10 3eph_A TRNA isopentenyltransfe 7.7 1.5E+02 0.005 26.5 1.5 13 152-164 91-104 (409)
No 1
>2brj_A Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone\:K13N2; cyclase, jasmonate synthesis, allene oxide cyclase, beta barrel; 1.5A {Arabidopsis thaliana} SCOP: b.159.1.1 PDB: 2dio_A* 2gin_A 1z8k_A* 2q4i_A 1zvc_A
Probab=98.76 E-value=3.8e-07 Score=74.12 Aligned_cols=130 Identities=22% Similarity=0.283 Sum_probs=90.7
Q ss_pred CCceeEEEEE-eeecCCCCCccEEEeecccccCCCCCccceEEEeecccccCCCCCCcceeeEEEEEEEec----CCCce
Q 029442 46 REKLSHLHFY-FHDIVGGPNTTTVRVAQAAMTNTSSTFFGAVVMMDDPLTIQPELSSKLVGRAQGIYASAS----LSELG 120 (193)
Q Consensus 46 ~~k~t~l~fY-~Hd~~sg~n~t~~~v~~~~~~~~~~~~FG~~~V~Dd~lteGp~~~Sk~VGrAQG~~~~~s----~~~~~ 120 (193)
+.|...|.+| +.+.-. ..|.-.+.-+ +.....|+.+.++++|.+|.. .+.||.-+|+-+... +.+..
T Consensus 13 ~~~vq~l~vye~NE~dr-~sPa~L~l~~-----k~~~slGDlvpFsNkLydg~l--~~rvG~taG~Cv~~~~~p~~~gdr 84 (188)
T 2brj_A 13 PSKVQELSVYEINELDR-HSPKILKNAF-----SLMFGLGDLVPFTNKLYTGDL--KKRVGITAGLCVVIEHVPEKKGER 84 (188)
T ss_dssp --CCEEEEEEEECCSCS-CCCCCBCCCS-----SSSSCTTCEEEECCEEEETTS--SCEEEEEEEEEEEEEEEGGGTEEE
T ss_pred ccceEEEEEEEeccccc-CCCceEEccc-----ccCcCcccEEeeccccccccc--ceeccccceEEEEEEecCCCCCcE
Confidence 4566677787 433221 2233233222 233568999999999997755 689999999977664 23445
Q ss_pred EEEEEEEEeccCcccCcEEEEecccCCCCCceeeEEEeccccccceeEEEEEEEEeeCCCCcEEEEEEEEE
Q 029442 121 FLMVMNFAFTEGKYNGSTLSVLGRNTPLSTVREMPIVGGSGLFRFARGYAQARTHTIDSEVAVVEYNVYVF 191 (193)
Q Consensus 121 ~~~~~~~vF~~g~y~GStl~v~G~~~~~~~~rE~~VVGGTG~Fr~ArGya~~~t~~~~~~~~i~e~~v~v~ 191 (193)
+--.+++.|-+ .| .|+++|..... +...++|.||||.|+.|+|.+++++..+.. .++|.+||.
T Consensus 85 yE~tyS~yfgd---~G-hISvQGpy~t~-~Dt~LAITGGTGif~gA~G~Vkl~~i~~P~---k~~yTf~L~ 147 (188)
T 2brj_A 85 FEATYSFYFGD---YG-HLSVQGPYLTY-EDSFLAITGGAGIFEGAYGQVKLQQLVYPT---KLFYTFYLK 147 (188)
T ss_dssp EEEEEEEECGG---GE-EEEEEEEEETT-BCEEEEEEEEEETTTTCEEEEEEEEEETTT---EEEEEEEEE
T ss_pred EEEEEEEEeCC---Cc-eEEEecccccc-ccceeeEecCcceEcceEEEEEEEeeccCc---eEEEEEEEe
Confidence 66667888854 24 79999995322 567999999999999999999999988643 577777764
No 2
>4h6b_A Allene oxide cyclase; B-barrel, oxylipins, fatty acid, metabolites, allene-oxide C activity, isomerase; HET: 10X 10Y; 1.35A {Physcomitrella patens} PDB: 4h6c_A 4h6a_A* 4h69_A*
Probab=98.55 E-value=6e-06 Score=67.40 Aligned_cols=135 Identities=18% Similarity=0.259 Sum_probs=88.2
Q ss_pred CCCceeEEEEE-eeecCCCCCccEEEeeccccc--CCCCCccceEEEeecccccCCCCCCcceeeEEEEEEEec----CC
Q 029442 45 KREKLSHLHFY-FHDIVGGPNTTTVRVAQAAMT--NTSSTFFGAVVMMDDPLTIQPELSSKLVGRAQGIYASAS----LS 117 (193)
Q Consensus 45 ~~~k~t~l~fY-~Hd~~sg~n~t~~~v~~~~~~--~~~~~~FG~~~V~Dd~lteGp~~~Sk~VGrAQG~~~~~s----~~ 117 (193)
++.|...|+.| +.|.-.+ .|.-.++-+.... ...-...|+++.++++|.+|.. -+-||...|+-+... ..
T Consensus 13 ~p~~vqel~VyEiNE~dr~-sPa~l~l~~k~~~~~~~~~~slGDLvpFsnkLydg~l--~~RiGitaG~Cv~i~~~~~k~ 89 (195)
T 4h6b_A 13 SPGHVQELFVYEINERDRG-SPVFLPFGGKKQPGTDAHVNSLGDLVPFSNKIYDGSL--KTRLGITAGLCTLISHSDQKN 89 (195)
T ss_dssp ---CCEEEEEEEECCSCSC-CCCCBCTTCCBCTTTCCBCCCTTCEEEECCEEEETTS--CCEEEEEEEEEEEEEEETTTT
T ss_pred CCceeEEEEEEEecccccC-CcceeecccccCccccccccccccccccccccccccc--cccccccccEEEEEeecCCCC
Confidence 35667788888 4443322 2333333221111 1113469999999999999987 789999999977653 22
Q ss_pred CceEEEEEEEEeccCcccCcEEEEecccCCCCCceeeEEEeccccccceeEEEEEEEEeeCCCCcEEEEEEEE
Q 029442 118 ELGFLMVMNFAFTEGKYNGSTLSVLGRNTPLSTVREMPIVGGSGLFRFARGYAQARTHTIDSEVAVVEYNVYV 190 (193)
Q Consensus 118 ~~~~~~~~~~vF~~g~y~GStl~v~G~~~~~~~~rE~~VVGGTG~Fr~ArGya~~~t~~~~~~~~i~e~~v~v 190 (193)
+...--.+++.|.+ .| +|+++|..-. -...-++|+||||.|+.|+|-+++..+-+.- .+-|..|+
T Consensus 90 GdryEci~Tf~fGD---~G-hIsvqGpy~t-~eDs~lAITGGTGiF~Ga~GqVkl~qiv~pf---klfytfyl 154 (195)
T 4h6b_A 90 GDRYEALYSFYFGD---YG-HISVQGPYIT-YEDSYLAITGGSGIFAGCYGQAKLHQIIFPF---KLFYTFYL 154 (195)
T ss_dssp EEEEEEEEEEECGG---GC-EEEEEEEEET-TBCEEEEEEEESGGGTTCEEEEEEEEEETTT---EEEEEEEE
T ss_pred CceEEEEEEEEecC---Cc-eEEEecceec-cCceeEEEecCcceEcccEEEEEEeEeeeee---eEEEEEEe
Confidence 23344457777854 35 6999998643 3456799999999999999999998877632 34444444
No 3
>3h6j_A Neuraminidase, sialidase; six-bladed beta-propeller, cell WALL, glycosidase, hydrolase, peptidoglycan-anchor, secreted; 1.60A {Pseudomonas aeruginosa} PDB: 2w38_A
Probab=21.24 E-value=63 Score=27.73 Aligned_cols=55 Identities=31% Similarity=0.423 Sum_probs=34.0
Q ss_pred CceEEEEEEEEeccCcccCcEEEEe-cccCCCCCceeeEEEeccccc---------cceeEEEEEEE
Q 029442 118 ELGFLMVMNFAFTEGKYNGSTLSVL-GRNTPLSTVREMPIVGGSGLF---------RFARGYAQART 174 (193)
Q Consensus 118 ~~~~~~~~~~vF~~g~y~GStl~v~-G~~~~~~~~rE~~VVGGTG~F---------r~ArGya~~~t 174 (193)
...|-..|--.|++|.++||--++- |.-.+ .-..-+-|=|||.| |.|.||-..+.
T Consensus 372 pstwnivmpsyfndgghkgsgaqvevgslni--rlgtgaavwgtgyfggidnsattrlatgyyrvra 436 (438)
T 3h6j_A 372 PSTWNIVMPSYFNDGGHKGSGAQVEVGSLNI--RLGTGAAVWGTGYFGGIDNSATTRLATGYYRVRA 436 (438)
T ss_dssp CSCCEECCCEEEESSSEEEESEEEEECSSEE--EEEECSBSBCCSCBTTTBCSGGGCBSEEEEEEEE
T ss_pred CcceeEeccceecCCCcCCccceEEeeeEEE--EeccCceeeeccccccccchhhheeccceEEEEe
Confidence 3457777888899999999865442 22111 11222345578877 67888876653
No 4
>2xdp_A Lysine-specific demethylase 4C; oxidoreductase, histone modification; 1.56A {Homo sapiens}
Probab=15.00 E-value=2.2e+02 Score=21.29 Aligned_cols=57 Identities=19% Similarity=0.230 Sum_probs=36.5
Q ss_pred CCCccceEEEeecccccCCCCCCcceeeEEEEEEEecCCCceEEEEEEEEeccCcccCcEEEEecccCCCCCceeeE
Q 029442 79 SSTFFGAVVMMDDPLTIQPELSSKLVGRAQGIYASASLSELGFLMVMNFAFTEGKYNGSTLSVLGRNTPLSTVREMP 155 (193)
Q Consensus 79 ~~~~FG~~~V~Dd~lteGp~~~Sk~VGrAQG~~~~~s~~~~~~~~~~~~vF~~g~y~GStl~v~G~~~~~~~~rE~~ 155 (193)
++..-|..+-+.| ++|.-.+++.+|+- .....++.|++| | ...+-|+.+-....|+|
T Consensus 63 GpP~~G~~V~V~W--~DG~~y~a~f~g~~-------------~~~~YtV~FeDg----s-~~~~kR~~iyt~~E~lP 119 (123)
T 2xdp_A 63 GPPAEGEVVQVKW--PDGKLYGAKYFGSN-------------IAHMYQVEFEDG----S-QIAMKREDIYTLDEELP 119 (123)
T ss_dssp CCCCTTCEEEEEC--TTSCEEEEEEEEEE-------------EEEEEEEECTTS----C-EEEEEGGGCCCSSSCCC
T ss_pred CCCCCCCEEEEEc--CCCCEEeEEEeeee-------------eEEEEEEEECCC----C-eEEecHHHccccccccc
Confidence 4556888888887 67766555544442 244578889865 4 44557777766666655
No 5
>2krs_A Probable enterotoxin; all beta, SH3, ENTD, CPF_0587, CPE0606, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium perfringens}
Probab=14.43 E-value=71 Score=20.99 Aligned_cols=16 Identities=13% Similarity=0.243 Sum_probs=13.9
Q ss_pred ccccCCCCCCcceeeE
Q 029442 92 PLTIQPELSSKLVGRA 107 (193)
Q Consensus 92 ~lteGp~~~Sk~VGrA 107 (193)
.|+.+|+.+++++|++
T Consensus 12 nvRs~P~~~~~vi~~l 27 (74)
T 2krs_A 12 NMRSGPGSNYGVIGTL 27 (74)
T ss_dssp EEESSSSTTTCEEEEE
T ss_pred EEEcCCCCCChHHEEE
Confidence 6889999999999875
No 6
>2kt8_A Probable surface protein; SH3 family, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Clostridium perfringens} PDB: 2kyb_A
Probab=13.01 E-value=1.3e+02 Score=19.90 Aligned_cols=16 Identities=25% Similarity=0.291 Sum_probs=13.3
Q ss_pred ccccCCCCCCcceeeE
Q 029442 92 PLTIQPELSSKLVGRA 107 (193)
Q Consensus 92 ~lteGp~~~Sk~VGrA 107 (193)
.|+.||+.+++++|.+
T Consensus 14 nvR~~Ps~~~~ii~~l 29 (76)
T 2kt8_A 14 NVREGASTSSKVIGSL 29 (76)
T ss_dssp EEESSSSTTSCEEEEE
T ss_pred EEEcCCCCCChhhEEE
Confidence 5789999999988864
No 7
>2kq8_A Cell WALL hydrolase; GFT protein structure, NESG, PSI, SH3 domain, structural genomics, protein structure initiative; NMR {Bacillus thuringiensis serovarkonkukian}
Probab=12.60 E-value=62 Score=21.02 Aligned_cols=16 Identities=6% Similarity=0.162 Sum_probs=13.6
Q ss_pred ccccCCCCCCcceeeE
Q 029442 92 PLTIQPELSSKLVGRA 107 (193)
Q Consensus 92 ~lteGp~~~Sk~VGrA 107 (193)
.|+.||+.+++++|++
T Consensus 13 nvRsgP~~~~~ii~~l 28 (70)
T 2kq8_A 13 NVRSGEGTNYRIIGAL 28 (70)
T ss_dssp CSSSSSSSCTTSCCCC
T ss_pred EEEcCCCCCCceEEEE
Confidence 5788999999999874
No 8
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=12.19 E-value=1.9e+02 Score=21.52 Aligned_cols=57 Identities=23% Similarity=0.269 Sum_probs=35.1
Q ss_pred CCCccceEEEeecccccCCCCCCcceeeEEEEEEEecCCCceEEEEEEEEeccCcccCcEEEEecccCCCCCceeeE
Q 029442 79 SSTFFGAVVMMDDPLTIQPELSSKLVGRAQGIYASASLSELGFLMVMNFAFTEGKYNGSTLSVLGRNTPLSTVREMP 155 (193)
Q Consensus 79 ~~~~FG~~~V~Dd~lteGp~~~Sk~VGrAQG~~~~~s~~~~~~~~~~~~vF~~g~y~GStl~v~G~~~~~~~~rE~~ 155 (193)
++..-|..+-+.| ++|.-.+++-+|+- .....++.|++| |. ...-|+.+-....|+|
T Consensus 62 GpP~~G~~V~V~W--~DG~~y~a~f~g~~-------------~~~~Y~V~feDg----s~-~~~kR~~iyt~~E~lP 118 (118)
T 2qqr_A 62 GPPAEGEVVQVRW--TDGQVYGAKFVASH-------------PIQMYQVEFEDG----SQ-LVVKRDDVYTLDEELP 118 (118)
T ss_dssp CCCCTTCEEEEEC--TTSCEEEEEEEEEE-------------EEEEEEEEETTS----CE-EEECGGGEEETTSCCC
T ss_pred CCCCCCCEEEEEc--CCCCEeeeEEecee-------------EEEEEEEEECCC----CE-EEEcHHHeeccccCCc
Confidence 3556888888887 77866666655542 234578889864 44 4445665544444443
No 9
>2ooj_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: MSE; 1.84A {Shewanella oneidensis} SCOP: b.159.2.1
Probab=10.59 E-value=5.4e+02 Score=19.33 Aligned_cols=73 Identities=19% Similarity=0.138 Sum_probs=45.3
Q ss_pred CCcceeeEEEEEEEecCC--CceEEEEE---EEEeccCcccCcEEEEec--ccCCCCCceeeEEEe--ccccccceeEEE
Q 029442 100 SSKLVGRAQGIYASASLS--ELGFLMVM---NFAFTEGKYNGSTLSVLG--RNTPLSTVREMPIVG--GSGLFRFARGYA 170 (193)
Q Consensus 100 ~Sk~VGrAQG~~~~~s~~--~~~~~~~~---~~vF~~g~y~GStl~v~G--~~~~~~~~rE~~VVG--GTG~Fr~ArGya 170 (193)
+-.+.|+.++-++.+-.+ +...++.+ +-.+. |+ +|| +.++- ..........+-||= |||++...+|-.
T Consensus 40 ~G~leGts~~~~L~~~~~~~G~A~yva~E~f~Gtl~-Gr-~Gs-Fvlqh~Gt~~~g~~~~~~~VVPgSGTGeL~Gl~G~g 116 (141)
T 2ooj_A 40 YGELEARSQGEMLSAMTAVKGSAGYVAIEQVVGKLC-GR-QGS-FVLQHFGIMTDGQNRLHLEVVPHSGAGELTGLYGTM 116 (141)
T ss_dssp CSSEEEEEEEEEEEEECSSTTCEEEEEEEEEEEEET-TE-EEE-EEEEEEEEECC--CEEEEEECTTCCEETTTTEEEEE
T ss_pred eeeEEEEEEEEEEEEEcCCCCcEEEEEEEEEEEEEC-Cc-eEE-EEEEEEEEEcCCcceEEEEEeCCCccccccCcEEEE
Confidence 345778888888877663 33344333 33332 22 553 55444 333334457889987 999999999999
Q ss_pred EEEEE
Q 029442 171 QARTH 175 (193)
Q Consensus 171 ~~~t~ 175 (193)
.++..
T Consensus 117 ~~~~~ 121 (141)
T 2ooj_A 117 AISIE 121 (141)
T ss_dssp EEEEE
T ss_pred EEEEc
Confidence 98644
No 10
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=7.71 E-value=1.5e+02 Score=26.52 Aligned_cols=13 Identities=31% Similarity=0.846 Sum_probs=9.5
Q ss_pred eeeE-EEecccccc
Q 029442 152 REMP-IVGGSGLFR 164 (193)
Q Consensus 152 rE~~-VVGGTG~Fr 164 (193)
..+| +|||||-|-
T Consensus 91 g~~pilVGGTglYi 104 (409)
T 3eph_A 91 GKIPIVVGGTHYYL 104 (409)
T ss_dssp TCEEEEECSCGGGG
T ss_pred CCCEEEECChHHHH
Confidence 3455 499999885
Done!