Query 029443
Match_columns 193
No_of_seqs 125 out of 515
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 21:24:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029443.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029443hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ws9_4 P1; 3.00A {Equine rhini 16.9 39 0.0013 23.1 0.6 17 132-148 13-29 (80)
2 2qkl_B SPAC19A8.12 protein, SP 15.1 56 0.0019 23.1 1.1 20 143-165 47-66 (95)
3 2yev_C CAA3-type cytochrome ox 14.2 56 0.0019 21.5 0.0 15 148-162 20-38 (66)
4 2jsh_A Appetite-regulating hor 9.7 24 0.00081 19.3 -1.7 14 178-191 9-22 (26)
5 2mev_4 Mengo virus coat protei 9.2 62 0.0021 21.7 -0.2 17 132-148 12-28 (70)
6 2l9u_A Receptor tyrosine-prote 9.2 2.6E+02 0.0088 16.3 2.5 18 110-127 17-34 (40)
7 1ixd_A Cylindromatosis tumour- 8.7 64 0.0022 23.1 -0.3 27 143-169 47-77 (104)
8 1tme_4 Theiler'S murine enceph 8.6 71 0.0024 21.5 -0.1 18 132-149 12-29 (71)
9 1rzh_H Reaction center protein 8.4 2.4E+02 0.0083 23.5 3.0 34 32-65 12-45 (260)
10 2e4h_B Tubulin alpha-ubiquitou 8.3 1.9E+02 0.0067 16.4 1.8 14 177-190 9-22 (36)
No 1
>2ws9_4 P1; 3.00A {Equine rhinitis a virus} PDB: 2wff_4 2xbo_4*
Probab=16.87 E-value=39 Score=23.13 Aligned_cols=17 Identities=35% Similarity=0.667 Sum_probs=12.4
Q ss_pred CCCCCCcchhHHHhcCc
Q 029443 132 TDSGSCGNIIIDFYWGM 148 (193)
Q Consensus 132 ~~~g~sGn~iyDff~G~ 148 (193)
...||+|++++.|||=.
T Consensus 13 nsSGN~G~IvnNfYsnq 29 (80)
T 2ws9_4 13 NMSGNSGSIVQNFYMQQ 29 (80)
T ss_dssp ---CCCCCGGGGSSCHH
T ss_pred ccCCccceeeehhhhhh
Confidence 46889999999999853
No 2
>2qkl_B SPAC19A8.12 protein, SPBC3B9.21 protein; protein-protein complex, hydrolase; 2.33A {Schizosaccharomyces pombe} SCOP: a.242.1.1
Probab=15.07 E-value=56 Score=23.12 Aligned_cols=20 Identities=20% Similarity=0.474 Sum_probs=16.8
Q ss_pred HHhcCcccCCccccccchhhhhh
Q 029443 143 DFYWGMELYPRIGKNFDIKVFTN 165 (193)
Q Consensus 143 Dff~G~ELNPRig~~~DlK~f~e 165 (193)
||+ +|.||++- ...+|.|++
T Consensus 47 Df~--~~~np~Lp-~~~lk~F~~ 66 (95)
T 2qkl_B 47 DFI--RAQNDQLP-SLGLRVFSA 66 (95)
T ss_dssp HTT--TTTCTTSC-CCCHHHHHH
T ss_pred ccc--cccCCCCC-CCcHHHHHH
Confidence 666 69999987 689999985
No 3
>2yev_C CAA3-type cytochrome oxidase subunit IV; electron transport; HET: FME 5PL HAS 4AG 7E8 HEC 7E9; 2.36A {Thermus thermophilus}
Probab=14.23 E-value=56 Score=21.51 Aligned_cols=15 Identities=40% Similarity=0.970 Sum_probs=10.8
Q ss_pred cccCCcc----ccccchhh
Q 029443 148 MELYPRI----GKNFDIKV 162 (193)
Q Consensus 148 ~ELNPRi----g~~~DlK~ 162 (193)
-.+|||. ++++|+..
T Consensus 20 l~lnPR~late~e~~DLr~ 38 (66)
T 2yev_C 20 LILNPRVLTTEGETFDLRF 38 (66)
Confidence 4688998 55788764
No 4
>2jsh_A Appetite-regulating hormone, obestatin; micellar solution, DPC, SDS, alternative splicing, amidation, lipoprotein, secreted; NMR {Synthetic} PDB: 2jsj_A
Probab=9.73 E-value=24 Score=19.33 Aligned_cols=14 Identities=7% Similarity=-0.095 Sum_probs=9.8
Q ss_pred HHHHHHHHHHcCcc
Q 029443 178 VTYCIKQVEALSYF 191 (193)
Q Consensus 178 ls~a~kQy~~~G~i 191 (193)
+.+...||++||-+
T Consensus 9 i~ls~~~y~~yG~~ 22 (26)
T 2jsh_A 9 IKLSGAQYQQHGRA 22 (26)
T ss_dssp GGGHHHHCSCSSSC
T ss_pred eEecHHHHHHHhHH
Confidence 34557789988854
No 5
>2mev_4 Mengo virus coat protein (subunit VP4); cardio picornavirus coat protein, icosahedral virus; 3.00A {Mengo virus} SCOP: b.121.4.1 PDB: 1mec_4
Probab=9.22 E-value=62 Score=21.71 Aligned_cols=17 Identities=35% Similarity=0.577 Sum_probs=13.6
Q ss_pred CCCCCCcchhHHHhcCc
Q 029443 132 TDSGSCGNIIIDFYWGM 148 (193)
Q Consensus 132 ~~~g~sGn~iyDff~G~ 148 (193)
...|++|.+++.|||-.
T Consensus 12 nssGN~G~ivnN~Y~n~ 28 (70)
T 2mev_4 12 SSEGNEGVIINNFYSNQ 28 (70)
T ss_dssp -CCCSCCCSSCCSSCHH
T ss_pred ccCCCcceeeehhhhhh
Confidence 46889999999999843
No 6
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=9.16 E-value=2.6e+02 Score=16.27 Aligned_cols=18 Identities=22% Similarity=0.383 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHhhccc
Q 029443 110 LIFGSFIFCIFLYIKGHL 127 (193)
Q Consensus 110 ~~i~s~~~s~~ly~k~~~ 127 (193)
+++|-.+-+.++|.++++
T Consensus 17 ~vif~~lg~tflywrgrr 34 (40)
T 2l9u_A 17 VVIFMMLGGTFLYWRGRR 34 (40)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCceeEEEcccc
Confidence 344555667888888764
No 7
>1ixd_A Cylindromatosis tumour-suppressor CYLD; structural genomics, riken structural genomics/proteomics initiative, RSGI, antitumor protein; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=8.72 E-value=64 Score=23.12 Aligned_cols=27 Identities=22% Similarity=0.389 Sum_probs=19.3
Q ss_pred HHhcCccc-CCccc---cccchhhhhhhchh
Q 029443 143 DFYWGMEL-YPRIG---KNFDIKVFTNCRFG 169 (193)
Q Consensus 143 Dff~G~EL-NPRig---~~~DlK~f~e~R~g 169 (193)
..|.|.|| ++..| +.++=|.+++|+|+
T Consensus 47 G~wvGVEldDep~GKnDGsv~G~rYF~C~p~ 77 (104)
T 1ixd_A 47 EVLAGLELEDECAGCTDGTFRGTRYFTCALK 77 (104)
T ss_dssp CCEEEEEESSCCTTCBSSEETTEECSCCCTT
T ss_pred ceEEEEEecCCCCCCCCCEECCEEeeecCCC
Confidence 57899999 77664 35666766678763
No 8
>1tme_4 Theiler'S murine encephalomyelitis virus (subunit VP4); icosahedral virus; 2.80A {Theiler} SCOP: b.121.4.1 PDB: 1tmf_4
Probab=8.64 E-value=71 Score=21.49 Aligned_cols=18 Identities=39% Similarity=0.504 Sum_probs=13.5
Q ss_pred CCCCCCcchhHHHhcCcc
Q 029443 132 TDSGSCGNIIIDFYWGME 149 (193)
Q Consensus 132 ~~~g~sGn~iyDff~G~E 149 (193)
...|++|.+++.|||-.=
T Consensus 12 ~ssGN~G~iinNfY~nqY 29 (71)
T 1tme_4 12 QSSGNEGVIINNFYSNQY 29 (71)
T ss_dssp --CCSCCCTTCCSSCHHH
T ss_pred ccCCCcceeeehhhhhhh
Confidence 468899999999998543
No 9
>1rzh_H Reaction center protein H chain; bacterial photosynthesis, proton TR pathway, revertant, integral membrane protein, photosynthes; HET: BCL BPH U10 HTO SPO LDA CDL; 1.80A {Rhodobacter sphaeroides} SCOP: b.41.1.1 f.23.10.1 PDB: 1e14_H* 1f6n_H* 1fnp_H* 1fnq_H* 1jgw_H* 1jgx_H* 1jgy_H* 1jgz_H* 1jh0_H* 1k6l_H* 1k6n_H* 1kby_H* 1l9b_H* 1l9j_H* 1m3x_H* 1mps_H* 1pcr_H* 1e6d_H* 1rg5_H* 1rgn_H* ...
Probab=8.39 E-value=2.4e+02 Score=23.47 Aligned_cols=34 Identities=9% Similarity=0.011 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCcceeeCcCCCCC
Q 029443 32 AVAWKLIACFGAFEAALQLLLPGKRVEGPISPTG 65 (193)
Q Consensus 32 ~~a~~~y~~~~~~q~lL~~~lPG~~v~G~~~~~G 65 (193)
.....+|+.|++|-.+++.+--=..-||.|+.+.
T Consensus 12 ~Aq~~l~~Fw~ffa~Li~yL~~E~~REGYPl~~~ 45 (260)
T 1rzh_H 12 LASLAIYSFWIFLAGLIYYLQTENMREGYPLENE 45 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSSSCSCBCT
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccccCCccccC
Confidence 5667889999999998888877777788887543
No 10
>2e4h_B Tubulin alpha-ubiquitous chain; cytoskeleton, CAP-Gly, complex structure, solution structure, CLIP, structural protein; NMR {Homo sapiens}
Probab=8.29 E-value=1.9e+02 Score=16.40 Aligned_cols=14 Identities=14% Similarity=0.078 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHcCc
Q 029443 177 AVTYCIKQVEALSY 190 (193)
Q Consensus 177 ~ls~a~kQy~~~G~ 190 (193)
|++.+.++|++++-
T Consensus 9 dl~~L~~dYee~~~ 22 (36)
T 2e4h_B 9 DMAALEKDYEEVGV 22 (36)
T ss_pred HHHHHHHHHHHHhc
Confidence 57788899998864
Done!