Query 029443
Match_columns 193
No_of_seqs 125 out of 515
Neff 6.2
Searched_HMMs 13730
Date Mon Mar 25 21:24:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029443.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/029443hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1eysh2 f.23.10.1 (H:7-43) Pho 27.2 25 0.0018 19.3 2.6 31 32-62 5-35 (37)
2 d1uptb_ a.193.1.1 (B:) Golgi a 17.5 18 0.0013 21.9 0.8 11 139-149 10-20 (58)
3 d2r7ka2 d.142.1.9 (A:124-361) 12.2 25 0.0018 25.8 0.3 10 148-157 186-195 (238)
4 d2r85a2 d.142.1.9 (A:100-334) 11.4 32 0.0023 24.7 0.8 12 148-159 183-194 (235)
5 d1ixda_ b.34.10.1 (A:) Cylindr 10.6 23 0.0017 23.8 -0.3 27 143-169 47-77 (104)
6 d1ulza3 d.142.1.2 (A:115-328) 8.4 38 0.0027 24.2 0.1 10 148-157 172-181 (214)
7 d2pila_ d.24.1.1 (A:) Pilin Gc 6.9 1.7E+02 0.012 18.4 3.2 18 103-120 3-20 (158)
8 d1w96a3 d.142.1.2 (A:184-450) 6.7 54 0.0039 24.4 0.3 10 148-157 195-204 (267)
9 d1uj4a2 d.58.40.1 (A:132-205) 6.5 19 0.0014 22.6 -2.2 20 136-155 41-60 (74)
10 d1m0sa2 d.58.40.1 (A:127-198) 6.5 25 0.0018 21.9 -1.5 19 136-154 38-56 (72)
No 1
>d1eysh2 f.23.10.1 (H:7-43) Photosystem II reaction centre subunit H, transmembrane region {Thermochromatium tepidum [TaxId: 1050]}
Probab=27.17 E-value=25 Score=19.33 Aligned_cols=31 Identities=19% Similarity=0.079 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCcceeeCcCC
Q 029443 32 AVAWKLIACFGAFEAALQLLLPGKRVEGPIS 62 (193)
Q Consensus 32 ~~a~~~y~~~~~~q~lL~~~lPG~~v~G~~~ 62 (193)
.....+|+.|++|-.+.+.+---..-||-|+
T Consensus 5 ~Aql~ly~Fw~FFagLi~YL~rE~~REGyPl 35 (37)
T d1eysh2 5 AAQITIWAFWLFFFGLIIYLRREDKREGYPL 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSSSCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccCCCC
Confidence 4566788889988887776655555566654
No 2
>d1uptb_ a.193.1.1 (B:) Golgi autoantigen, golgin-245 {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.46 E-value=18 Score=21.88 Aligned_cols=11 Identities=18% Similarity=0.691 Sum_probs=9.8
Q ss_pred chhHHHhcCcc
Q 029443 139 NIIIDFYWGME 149 (193)
Q Consensus 139 n~iyDff~G~E 149 (193)
|++|.+.||+|
T Consensus 10 nvLfeYMmG~E 20 (58)
T d1uptb_ 10 KVLFEYMMGRE 20 (58)
T ss_dssp HHHHHHHTTSS
T ss_pred HHHHHHHcCcc
Confidence 78999999986
No 3
>d2r7ka2 d.142.1.9 (A:124-361) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Methanocaldococcus jannaschii [TaxId: 2190]}
Probab=12.21 E-value=25 Score=25.77 Aligned_cols=10 Identities=20% Similarity=0.454 Sum_probs=8.5
Q ss_pred cccCCccccc
Q 029443 148 MELYPRIGKN 157 (193)
Q Consensus 148 ~ELNPRig~~ 157 (193)
.|+|||++++
T Consensus 186 iEinpR~~G~ 195 (238)
T d2r7ka2 186 FEMSARVDGG 195 (238)
T ss_dssp EEEESSBCGG
T ss_pred EEEECCCCCC
Confidence 7999999754
No 4
>d2r85a2 d.142.1.9 (A:100-334) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Pyrococcus furiosus [TaxId: 2261]}
Probab=11.37 E-value=32 Score=24.70 Aligned_cols=12 Identities=25% Similarity=0.329 Sum_probs=9.0
Q ss_pred cccCCccccccc
Q 029443 148 MELYPRIGKNFD 159 (193)
Q Consensus 148 ~ELNPRig~~~D 159 (193)
.|.|||++++..
T Consensus 183 iEiNpR~~Gg~~ 194 (235)
T d2r85a2 183 FEISARIVAGTN 194 (235)
T ss_dssp EEEECSCCGGGG
T ss_pred EEEeCCCCCCCc
Confidence 599999965543
No 5
>d1ixda_ b.34.10.1 (A:) Cylindromatosis tumour-suppressor Cyld {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.64 E-value=23 Score=23.80 Aligned_cols=27 Identities=22% Similarity=0.389 Sum_probs=19.5
Q ss_pred HHhcCccc-CCccc---cccchhhhhhhchh
Q 029443 143 DFYWGMEL-YPRIG---KNFDIKVFTNCRFG 169 (193)
Q Consensus 143 Dff~G~EL-NPRig---~~~DlK~f~e~R~g 169 (193)
.-|.|.|| +|-.| +.+|=|.+++|++.
T Consensus 47 g~~~GVeldd~~~G~ndGt~~G~rYF~C~~~ 77 (104)
T d1ixda_ 47 EVLAGLELEDECAGCTDGTFRGTRYFTCALK 77 (104)
T ss_dssp CCEEEEEESSCCTTCBSSEETTEECSCCCTT
T ss_pred CcEEEEEeCCCCCCCcCCEECCEEEEecCCC
Confidence 35789999 77664 36777777788763
No 6
>d1ulza3 d.142.1.2 (A:115-328) Biotin carboxylase (BC), domain 2 {Aquifex aeolicus [TaxId: 63363]}
Probab=8.39 E-value=38 Score=24.17 Aligned_cols=10 Identities=30% Similarity=0.484 Sum_probs=8.3
Q ss_pred cccCCccccc
Q 029443 148 MELYPRIGKN 157 (193)
Q Consensus 148 ~ELNPRig~~ 157 (193)
.|+|||++++
T Consensus 172 iEin~R~~~~ 181 (214)
T d1ulza3 172 IEMNTRIQVE 181 (214)
T ss_dssp EEEECSCCTT
T ss_pred EEecCcCCCc
Confidence 6999999754
No 7
>d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}
Probab=6.90 E-value=1.7e+02 Score=18.40 Aligned_cols=18 Identities=11% Similarity=0.130 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 029443 103 LGEIYSALIFGSFIFCIF 120 (193)
Q Consensus 103 ~~~Ll~~~~i~s~~~s~~ 120 (193)
..||+++..|+|.+.++.
T Consensus 3 LIELlVViaIIgILaaia 20 (158)
T d2pila_ 3 LIELMIVIAIVGILAAVA 20 (158)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHH
Confidence 356777666666544443
No 8
>d1w96a3 d.142.1.2 (A:184-450) Acetyl-CoA carboxylase, BC-M subdomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=6.71 E-value=54 Score=24.40 Aligned_cols=10 Identities=40% Similarity=0.743 Sum_probs=8.2
Q ss_pred cccCCccccc
Q 029443 148 MELYPRIGKN 157 (193)
Q Consensus 148 ~ELNPRig~~ 157 (193)
.|+|||+++.
T Consensus 195 iEiNpR~~~~ 204 (267)
T d1w96a3 195 LELNPRLQVE 204 (267)
T ss_dssp EEEECSCCTT
T ss_pred EEeccccccc
Confidence 6999999753
No 9
>d1uj4a2 d.58.40.1 (A:132-205) D-ribose-5-phosphate isomerase (RpiA), lid domain {Thermus thermophilus [TaxId: 274]}
Probab=6.53 E-value=19 Score=22.62 Aligned_cols=20 Identities=25% Similarity=0.149 Sum_probs=16.0
Q ss_pred CCcchhHHHhcCcccCCccc
Q 029443 136 SCGNIIIDFYWGMELYPRIG 155 (193)
Q Consensus 136 ~sGn~iyDff~G~ELNPRig 155 (193)
..||.|+|...+.--||.-.
T Consensus 41 DnGN~IlD~~~~~i~dp~~l 60 (74)
T d1uj4a2 41 DGGHLIADCRFGPIGDPLGL 60 (74)
T ss_dssp TTSCEEEEECCCSCSCHHHH
T ss_pred cCCCEEEECCCCCcCCHHHH
Confidence 46899999999987777644
No 10
>d1m0sa2 d.58.40.1 (A:127-198) D-ribose-5-phosphate isomerase (RpiA), lid domain {Haemophilus influenzae [TaxId: 727]}
Probab=6.48 E-value=25 Score=21.87 Aligned_cols=19 Identities=32% Similarity=0.251 Sum_probs=14.9
Q ss_pred CCcchhHHHhcCcccCCcc
Q 029443 136 SCGNIIIDFYWGMELYPRI 154 (193)
Q Consensus 136 ~sGn~iyDff~G~ELNPRi 154 (193)
..||.|+|...+.--||.-
T Consensus 38 DnGN~IlD~~~~~i~dp~~ 56 (72)
T d1m0sa2 38 DNGNVILDVHNFSILNPVE 56 (72)
T ss_dssp TTSCEEEEEESCCCSCHHH
T ss_pred cCCCEEEECCCCCcCCHHH
Confidence 4699999988887777753
Done!