BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>029445
MACHFAYYYHAFSLTPLRDLSANNTNFRPSRKYKPLLFSSINSSSRASYGTFVSEAVRLL
GPPASFEASKLKVVFLGEGMNDYSRILPRTYILSHCDFTANLTLTISNVINLEQLRGWYI
KDDVVAEWKKVRDDMCLHVHCYVSGPSLLRDLAAEFRYHIFTKEMPLVSFSLPATATVPI
LYEKNSKTARTHL

High Scoring Gene Products

Symbol, full name Information P value
AT1G44000 protein from Arabidopsis thaliana 2.7e-45
NYE1
AT4G22920
protein from Arabidopsis thaliana 5.6e-29
AT4G11910 protein from Arabidopsis thaliana 1.7e-27
AT4G11911 protein from Arabidopsis thaliana 2.2e-27

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  029445
        (193 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2037154 - symbol:AT1G44000 "AT1G44000" species...   476  2.7e-45   1
TAIR|locus:2127153 - symbol:NYE1 "AT4G22920" species:3702...   322  5.6e-29   1
TAIR|locus:2137020 - symbol:AT4G11910 "AT4G11910" species...   308  1.7e-27   1
TAIR|locus:4515103377 - symbol:AT4G11911 "AT4G11911" spec...   307  2.2e-27   1


>TAIR|locus:2037154 [details] [associations]
            symbol:AT1G44000 "AT1G44000" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005739
            "mitochondrion" evidence=ISM] [GO:0009658 "chloroplast
            organization" evidence=IMP] EMBL:CP002684 GO:GO:0009658
            InterPro:IPR024438 Pfam:PF12638 EMBL:AY045870 EMBL:AY091453
            IPI:IPI00544101 RefSeq:NP_564489.1 UniGene:At.19660 STRING:Q94AQ9
            PRIDE:Q94AQ9 EnsemblPlants:AT1G44000.1 GeneID:841000
            KEGG:ath:AT1G44000 TAIR:At1g44000 eggNOG:NOG136444
            InParanoid:Q94AQ9 OMA:WVYFHSS PhylomeDB:Q94AQ9
            ProtClustDB:CLSN2688450 ArrayExpress:Q94AQ9 Genevestigator:Q94AQ9
            Uniprot:Q94AQ9
        Length = 260

 Score = 476 (172.6 bits), Expect = 2.7e-45, P = 2.7e-45
 Identities = 106/179 (59%), Positives = 126/179 (70%)

Query:     1 MACHFAYYYHAFSLT-PLRDLSANNTNFRPSRKYKPLLF-------SSINSSSRASYGTF 52
             MAC+   YYH   L+ P R++ ++  +    R    LL        SS  S    SY T 
Sbjct:     1 MACYIVPYYHHPVLSHPNREIFSHRHHHH-HRFCNNLLNRRISVPRSSAISDGGVSYNTL 59

Query:    53 VSEAVRLLGPPASFEASKLKVVFLGEGMNDYSR---ILPRTYILSHCDFTANLTLTISNV 109
             VSEAVRLL P A+F++SKLKV FLGE + + S    I PRTYILSHCDFTANLTLTISNV
Sbjct:    60 VSEAVRLLVPQANFDSSKLKVEFLGELLENKSNGGIITPRTYILSHCDFTANLTLTISNV 119

Query:   110 INLEQLRGWYIKDDVVAEWKKVRDDMCLHVHCYVSGPSLLRDLAAEFRYHIFTKEMPLV 168
             INL+QL GWY KDDVVAEWKKV D++ LH+HC VSG SLL+D+AAE RYHIF+KE+PLV
Sbjct:   120 INLDQLEGWYKKDDVVAEWKKVNDELRLHIHCCVSGMSLLQDVAAELRYHIFSKELPLV 178


>TAIR|locus:2127153 [details] [associations]
            symbol:NYE1 "AT4G22920" species:3702 "Arabidopsis
            thaliana" [GO:0015996 "chlorophyll catabolic process" evidence=IMP]
            [GO:0005515 "protein binding" evidence=IPI] GO:GO:0009536
            EMBL:CP002687 GenomeReviews:CT486007_GR EMBL:AL031018 EMBL:AL161558
            GO:GO:0015996 GO:GO:0010304 eggNOG:NOG118556 HOGENOM:HOG000243267
            ProtClustDB:CLSN2689564 InterPro:IPR024438 Pfam:PF12638
            EMBL:AY063900 EMBL:AY096504 EMBL:AY850161 EMBL:DQ437531
            IPI:IPI00529577 PIR:T05123 RefSeq:NP_567673.1 UniGene:At.27150
            STRING:O82741 DNASU:828391 EnsemblPlants:AT4G22920.1 GeneID:828391
            KEGG:ath:AT4G22920 TAIR:At4g22920 InParanoid:O82741 OMA:YYIFRKE
            PhylomeDB:O82741 Genevestigator:O82741 Uniprot:O82741
        Length = 268

 Score = 322 (118.4 bits), Expect = 5.6e-29, P = 5.6e-29
 Identities = 77/161 (47%), Positives = 95/161 (59%)

Query:    11 AFSLTPLRDLSANNTNFRPSRKYKPLLFSSINSSSRASYGTFVSEAVRLLGPPASFEASK 70
             A  L P +   A +     S     L F+  N  S+    + V  A RL GP A FE+SK
Sbjct:     6 AIMLLPTKLKPAYSDKRSNSSSSSSLFFN--NRRSKKKNQSIVPVA-RLFGP-AIFESSK 61

Query:    71 LKVVFLGEGMNDYSRILPRTYILSHCDFTANLTLTISNVINLEQLRGW---YIKDDVVAE 127
             LKV+FLG     +   LPRTY L+H D TA LTL IS  IN  QL+GW     +D+VVAE
Sbjct:    62 LKVLFLGVDEKKHPSTLPRTYTLTHSDITAKLTLAISQSINNSQLQGWANRLYRDEVVAE 121

Query:   128 WKKVRDDMCLHVHCYVSGPSLLRDLAAEFRYHIFTKEMPLV 168
             WKKV+  M LHVHC++SG   L DL A+FRY IF KE+P+V
Sbjct:   122 WKKVKGKMSLHVHCHISGGHFLLDLFAKFRYFIFCKELPVV 162


>TAIR|locus:2137020 [details] [associations]
            symbol:AT4G11910 "AT4G11910" species:3702 "Arabidopsis
            thaliana" [GO:0008150 "biological_process" evidence=ND] [GO:0009507
            "chloroplast" evidence=ISM] GO:GO:0009536 EMBL:CP002687
            GenomeReviews:CT486007_GR GO:GO:0015996 GO:GO:0010304
            eggNOG:NOG118556 HOGENOM:HOG000243267 ProtClustDB:CLSN2689564
            InterPro:IPR024438 Pfam:PF12638 EMBL:AY699948 EMBL:DQ437532
            IPI:IPI00545148 RefSeq:NP_192928.2 UniGene:At.33525
            EnsemblPlants:AT4G11910.1 GeneID:826798 KEGG:ath:AT4G11910
            TAIR:At4g11910 InParanoid:Q66WT5 PhylomeDB:Q66WT5
            Genevestigator:Q66WT5 Uniprot:Q66WT5
        Length = 271

 Score = 308 (113.5 bits), Expect = 1.7e-27, P = 1.7e-27
 Identities = 72/154 (46%), Positives = 91/154 (59%)

Query:    25 TNFRPSRKYKPLLFSSINSSS-----RASY--GTFVSEAVRLLGPPASFEASKLKVVFLG 77
             TN     K KP+    +++SS     R S      +    RL GP A FEASKLKV+FLG
Sbjct:     6 TNLLLPSKMKPVFPEKLSTSSLCVTTRRSKMKNRSIVPVARLFGP-AIFEASKLKVLFLG 64

Query:    78 EGMNDYSRILPRTYILSHCDFTANLTLTISNVINLEQLRGW---YIKDDVVAEWKKVRDD 134
                  +   LPRTY L+H D TA LTL IS  IN  QL+GW     +D+VV EWKKV+  
Sbjct:    65 VDEKKHPAKLPRTYTLTHSDITAKLTLAISQSINNSQLQGWANKLFRDEVVGEWKKVKGK 124

Query:   135 MCLHVHCYVSGPSLLRDLAAEFRYHIFTKEMPLV 168
             M LHVHC++SG     +L A+ RY+IF KE+P+V
Sbjct:   125 MSLHVHCHISGGHFFLNLIAKLRYYIFCKELPVV 158


>TAIR|locus:4515103377 [details] [associations]
            symbol:AT4G11911 "AT4G11911" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] GO:GO:0009536 EMBL:CP002687
            GenomeReviews:CT486007_GR EMBL:AL161533 GO:GO:0015996 GO:GO:0010304
            IPI:IPI00891095 RefSeq:NP_001118967.1 UniGene:At.73507
            EnsemblPlants:AT4G11911.1 GeneID:6240548 KEGG:ath:AT4G11911
            TAIR:At4g11911 eggNOG:NOG118556 HOGENOM:HOG000243267 OMA:GTHESKQ
            PhylomeDB:B3H593 ProtClustDB:CLSN2689564 Genevestigator:B3H593
            InterPro:IPR024438 Pfam:PF12638 Uniprot:B3H593
        Length = 273

 Score = 307 (113.1 bits), Expect = 2.2e-27, P = 2.2e-27
 Identities = 68/133 (51%), Positives = 82/133 (61%)

Query:    39 SSINSSSRASYGTFVSEAVRLLGPPASFEASKLKVVFLGEGMNDYSRILPRTYILSHCDF 98
             S+  SS R     F     RL G  A FEASKL V FLG     +   LPRTY  +H D 
Sbjct:    29 STTRSSKRKKQSMF--PVARLFGQ-AIFEASKLNVKFLGVDEKKHPPNLPRTYTFTHSDI 85

Query:    99 TANLTLTISNVINLEQLRGW---YIKDDVVAEWKKVRDDMCLHVHCYVSGPSLLRDLAAE 155
             TA LTL IS+ IN  QL+GW     +D+VVAEW+KV+ +M LHVHC++SG   L DL AE
Sbjct:    86 TAKLTLAISHSINNSQLQGWANRLYRDEVVAEWRKVKSNMSLHVHCHISGDHFLLDLIAE 145

Query:   156 FRYHIFTKEMPLV 168
              RY IF KE+P+V
Sbjct:   146 LRYFIFCKELPMV 158


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.323   0.135   0.411    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      193       193   0.00098  110 3  11 22  0.40    32
                                                     31  0.43    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  607 (65 KB)
  Total size of DFA:  169 KB (2099 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  17.54u 0.19s 17.73t   Elapsed:  00:00:01
  Total cpu time:  17.55u 0.19s 17.74t   Elapsed:  00:00:01
  Start:  Fri May 10 21:12:06 2013   End:  Fri May 10 21:12:07 2013

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