Query 029445
Match_columns 193
No_of_seqs 66 out of 68
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 21:28:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029445.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029445hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3j20_A 30S ribosomal protein S 53.5 70 0.0024 26.5 8.5 76 63-143 24-123 (198)
2 3rgh_A Filamin-A; cell adhesio 46.1 52 0.0018 23.2 5.8 44 61-106 1-45 (100)
3 3w1s_C Ubiquitin-like protein 45.6 13 0.00046 27.2 2.7 36 64-101 2-37 (91)
4 1wz3_A Autophagy 12B, ATG12B, 43.2 14 0.00048 27.3 2.4 36 61-98 1-39 (96)
5 2d7p_A Filamin-C; beta-sandwic 30.6 1.5E+02 0.0053 21.4 6.5 75 63-141 6-85 (112)
6 2xzm_4 40S ribosomal protein S 25.0 3.1E+02 0.011 23.8 8.2 80 63-143 37-144 (265)
7 3qii_A PHD finger protein 20; 21.7 45 0.0015 24.6 2.0 21 114-135 18-38 (85)
8 2di8_A Filamin-B; beta-sandwic 20.3 2.4E+02 0.0083 20.1 7.1 78 61-141 4-84 (111)
9 3p8d_A Medulloblastoma antigen 19.9 51 0.0017 23.1 1.9 18 117-135 6-23 (67)
10 2e5q_A PHD finger protein 19; 18.5 59 0.002 23.0 1.9 17 121-139 11-27 (63)
No 1
>3j20_A 30S ribosomal protein S3AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=53.46 E-value=70 Score=26.51 Aligned_cols=76 Identities=17% Similarity=0.156 Sum_probs=53.1
Q ss_pred CCCCCCCccEEEEecCCCCCCCCCCCceeeeccCCCCcc--------------------eEEEEehhcchhhhc----cc
Q 029445 63 PASFEASKLKVVFLGEGMNDYSRILPRTYILSHCDFTAN--------------------LTLTISNVINLEQLR----GW 118 (193)
Q Consensus 63 p~~Fnp~KLsV~f~g~~~t~~~PiiPRrYTLTHSD~T~~--------------------LfLtIg~~fn~dqL~----~w 118 (193)
|+.|+-..+--+.. +....+.+|.+-+|..|.|++ ||==.|.++..|.|. .|
T Consensus 24 P~~F~~~~iG~T~~----~~~~~l~GRv~EvsL~DL~~d~~~~~~K~kf~i~~V~G~~a~T~F~G~~lT~DklrSlVrk~ 99 (198)
T 3j20_A 24 PDFFGGVEVGLTPA----DDPEKVLNRVVEVTLKDVTGDFTKSHVKLYFQVYDVKGQNAYTKFKGMKLARSYIRSLVRRK 99 (198)
T ss_dssp CSSSSCCCCCEEEE----ESSSCCSSCEEEECCCSSTTHHHHHCCCEEEEEEEESSSEEEEEEEEECCCHHHHHHHCCSS
T ss_pred chhcCCceeEEEEc----cCcccccCeEEEEEHHHhcCChhhheEEEEEEEEeccCCEEEEEEcceeechhhhhhheecc
Confidence 47787777766665 234669999999999999987 344456777778765 45
Q ss_pred cccceEEEEEEecCCeeEEEEEEEE
Q 029445 119 YIKDDVVAEWKKVRDDMCLHVHCYV 143 (193)
Q Consensus 119 ~~RDEVlAEW~~~~g~~~LhVyc~V 143 (193)
.++=|..-.=+ +...|.|.|+|-.
T Consensus 100 ~s~Iea~vdVk-T~DGy~lRvf~i~ 123 (198)
T 3j20_A 100 TTRIDGIFNIT-TKDGYKLRVMAMA 123 (198)
T ss_dssp SCEEEEEEEEE-CTTSCEEEEEEEE
T ss_pred eeEEEEEEEEE-ecCCCEEEEEEEE
Confidence 55555555544 4567889888864
No 2
>3rgh_A Filamin-A; cell adhesion, cytoskeleton-complex, disease mutation, immun like, cytoskeleton, actin-binding, cell junction, shape; HET: CME; 2.44A {Homo sapiens} SCOP: b.1.18.0
Probab=46.11 E-value=52 Score=23.24 Aligned_cols=44 Identities=27% Similarity=0.390 Sum_probs=31.1
Q ss_pred CCCCCCCCCccEEEEecCCCCCCCCCCCceeeeccCCC-CcceEEEE
Q 029445 61 GPPASFEASKLKVVFLGEGMNDYSRILPRTYILSHCDF-TANLTLTI 106 (193)
Q Consensus 61 gpp~~Fnp~KLsV~f~g~~~t~~~PiiPRrYTLTHSD~-T~~LfLtI 106 (193)
|.|..+||+|..+. |+|+.....-.|..+|+.=.|. .++|...|
T Consensus 1 ~~~~~~d~skv~~~--GpGL~~~~vg~~~~F~V~~~~aG~~~l~v~i 45 (100)
T 3rgh_A 1 GAMDPFDASKVKCS--GPGLERATAGEVGQFQVDCSSAGSAELTIEI 45 (100)
T ss_dssp --CCCCCGGGCEEE--SGGGTEEETTSCEEEEEECTTSCSCCEEEEE
T ss_pred CCcCCcccccCEEE--CCCcCCeEcCCcEEEEEEECCCCCceEEEEE
Confidence 45788999999985 6677655556788899988874 33466666
No 3
>3w1s_C Ubiquitin-like protein ATG12; ubiquitin fold, E3-like, ATG3 binding, isopeptide bond betwe Gly186 and ATG5 Lys149, ligase; 2.60A {Saccharomyces cerevisiae S288C}
Probab=45.63 E-value=13 Score=27.19 Aligned_cols=36 Identities=17% Similarity=0.250 Sum_probs=18.7
Q ss_pred CCCCCCccEEEEecCCCCCCCCCCCceeeeccCCCCcc
Q 029445 64 ASFEASKLKVVFLGEGMNDYSRILPRTYILSHCDFTAN 101 (193)
Q Consensus 64 ~~Fnp~KLsV~f~g~~~t~~~PiiPRrYTLTHSD~T~~ 101 (193)
+.++++|+.|.|.+ +...+.+..++|.+.-++-.++
T Consensus 2 ~~~~~~Kv~vrfk~--~g~~P~l~k~KflV~~~~t~~~ 37 (91)
T 3w1s_C 2 AHMNIQKIQIKFQP--IGSIGQLKPSVCKISMSQSFAM 37 (91)
T ss_dssp ----CCEEEEEEEE--CCC-------EEEEETTSBHHH
T ss_pred CCCCCCeEEEEEEe--cCCCCcccccEEEcCCCCCHHH
Confidence 57899999999984 4455678888998876655444
No 4
>1wz3_A Autophagy 12B, ATG12B, APG12B; ubiquitin-fold, plant protein; 1.80A {Arabidopsis thaliana} SCOP: d.15.1.7
Probab=43.20 E-value=14 Score=27.26 Aligned_cols=36 Identities=19% Similarity=0.208 Sum_probs=20.0
Q ss_pred CCCCC---CCCCccEEEEecCCCCCCCCCCCceeeeccCCC
Q 029445 61 GPPAS---FEASKLKVVFLGEGMNDYSRILPRTYILSHCDF 98 (193)
Q Consensus 61 gpp~~---Fnp~KLsV~f~g~~~t~~~PiiPRrYTLTHSD~ 98 (193)
|||+. .+++|+.|.|.. +...+.+..++|.+.-++.
T Consensus 1 ~~~~~~~~~~~~KV~V~~~~--~~~~P~l~k~KflV~~~~t 39 (96)
T 1wz3_A 1 GPMATESPNSVQKIVVHLRA--TGGAPILKQSKFKVSGSDK 39 (96)
T ss_dssp -----------CEEEEEEEE--CTTCCCCSCCEEEEETTSB
T ss_pred CCcCCCCCCCCCeEEEEEEE--CCCCCcccccEEEeCCCCc
Confidence 56654 779999999984 3345567778887765543
No 5
>2d7p_A Filamin-C; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10 PDB: 2eeb_A
Probab=30.59 E-value=1.5e+02 Score=21.42 Aligned_cols=75 Identities=8% Similarity=0.035 Sum_probs=48.9
Q ss_pred CCCCCCCccEEEEecCCCCCCCCCCCceeeeccCCCCcceEEEEehhcc---hhhhccccccc-eEEEEEE-ecCCeeEE
Q 029445 63 PASFEASKLKVVFLGEGMNDYSRILPRTYILSHCDFTANLTLTISNVIN---LEQLRGWYIKD-DVVAEWK-KVRDDMCL 137 (193)
Q Consensus 63 p~~Fnp~KLsV~f~g~~~t~~~PiiPRrYTLTHSD~T~~LfLtIg~~fn---~dqL~~w~~RD-EVlAEW~-~~~g~~~L 137 (193)
+...||+|+.|. |.+......-.|=.+|++-.|.-++|...|-..-. .-+++ .+.| -.-.+|. ...|.|.+
T Consensus 6 ~~~~Daskv~~~--g~~~~~~~vg~~~~F~V~~~~a~g~l~v~V~~P~g~~~~~~v~--d~~~gty~v~ytP~~~G~h~v 81 (112)
T 2d7p_A 6 SGSDDARRLTVT--SLQETGLKVNQPASFAVQLNGARGVIDARVHTPSGAVEECYVS--ELDSDKHTIRFIPHENGVHSI 81 (112)
T ss_dssp CCSCGGGGCEEC--SSCSBCCCTTCCEEEEEECTTCCSCEEEEEECSSSCBCCCEEC--SCBTTEEEEEECCSSCEEEEE
T ss_pred cCCCCcceeEEe--CCCcCCcccCCcEEEEEEeCCCCCCEEEEEECCCCCeeeeEEE--eCCCCeEEEEEEcCCCEeEEE
Confidence 357899999885 55554444556778999999999999998843111 11333 2333 4566776 55678887
Q ss_pred EEEE
Q 029445 138 HVHC 141 (193)
Q Consensus 138 hVyc 141 (193)
+|.+
T Consensus 82 ~V~~ 85 (112)
T 2d7p_A 82 DVKF 85 (112)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7764
No 6
>2xzm_4 40S ribosomal protein S3A; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_4
Probab=25.01 E-value=3.1e+02 Score=23.82 Aligned_cols=80 Identities=18% Similarity=0.208 Sum_probs=51.7
Q ss_pred CCCCCCCccEEEEec--CCCC-CCCCCCCceeeeccCCCCcc---------------------eEEEEehhcchhhhc--
Q 029445 63 PASFEASKLKVVFLG--EGMN-DYSRILPRTYILSHCDFTAN---------------------LTLTISNVINLEQLR-- 116 (193)
Q Consensus 63 p~~Fnp~KLsV~f~g--~~~t-~~~PiiPRrYTLTHSD~T~~---------------------LfLtIg~~fn~dqL~-- 116 (193)
|+.|+-..+=-+... .|.. ....+.+|.+-+|..|.|++ ||==.|.++..|.|.
T Consensus 37 P~~F~~r~iGkTlv~rt~gtkia~d~L~GRv~EvsLaDL~~d~~~~~~rK~kf~i~~V~G~nalT~F~GmdlTrDklrSl 116 (265)
T 2xzm_4 37 PIPFSSKSFGKTLVTKSSGNRIASEEIKGRVVESTLADLKDNSNDKAWRKVKLVIDEVDGRNAKTSFYGLDITRDRLCSM 116 (265)
T ss_dssp CTTSCSSCCSEEEEECCCSSSCSTTSGGGCEEEEESCSSSSTTTTSCCCEEEEEEEEECSSCEEEEEEEEECCHHHHHHS
T ss_pred CcccCCceeEEEecccccCcccCchhcCCcEEEEEHHHhcCChhhhcceEEEEEEEeecCCEEEEEEeeeeccHHHhhhh
Confidence 467777666666552 1111 23458899999999999887 333456777777765
Q ss_pred --cccccceEEEEEEecCCeeEEEEEEEE
Q 029445 117 --GWYIKDDVVAEWKKVRDDMCLHVHCYV 143 (193)
Q Consensus 117 --~w~~RDEVlAEW~~~~g~~~LhVyc~V 143 (193)
.|.++=|..-.=+ +...|.|.|+|-.
T Consensus 117 VrKw~s~Iea~vdVk-T~DGY~lRvf~i~ 144 (265)
T 2xzm_4 117 IRKWQTLIEARVDCK-TNDGYIIRVFTLA 144 (265)
T ss_dssp CCTTBCEEEEEEEEE-ETTTEEEEEEEEE
T ss_pred hcccceeEEEEEEEE-eCCCcEEEEEEEE
Confidence 5555555555544 4557999999863
No 7
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=21.70 E-value=45 Score=24.56 Aligned_cols=21 Identities=19% Similarity=0.240 Sum_probs=13.0
Q ss_pred hhccccccceEEEEEEecCCee
Q 029445 114 QLRGWYIKDDVVAEWKKVRDDM 135 (193)
Q Consensus 114 qL~~w~~RDEVlAEW~~~~g~~ 135 (193)
+-..|.--|+|+|.| .++.-|
T Consensus 18 ~~~~f~vGd~VlArW-~D~~yY 38 (85)
T 3qii_A 18 GSSEFQINEQVLACW-SDCRFY 38 (85)
T ss_dssp ---CCCTTCEEEEEC-TTSCEE
T ss_pred CCcccccCCEEEEEe-CCCCEe
Confidence 445677789999999 444333
No 8
>2di8_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10
Probab=20.34 E-value=2.4e+02 Score=20.14 Aligned_cols=78 Identities=14% Similarity=0.204 Sum_probs=50.9
Q ss_pred CCCCCCCCCccEEEEecCCCCCCCCCCCceeeeccCCC-CcceEEEEehhcchhhhccccccce-EEEEEE-ecCCeeEE
Q 029445 61 GPPASFEASKLKVVFLGEGMNDYSRILPRTYILSHCDF-TANLTLTISNVINLEQLRGWYIKDD-VVAEWK-KVRDDMCL 137 (193)
Q Consensus 61 gpp~~Fnp~KLsV~f~g~~~t~~~PiiPRrYTLTHSD~-T~~LfLtIg~~fn~dqL~~w~~RDE-VlAEW~-~~~g~~~L 137 (193)
++....||+|..|. |+|+.....-.++.+|++=.|. .+.|.+.|-..-. .+++--.++|- ....|+ ...|.|.+
T Consensus 4 ~~~~~~d~~~~~v~--G~GL~~~~vg~~~~F~V~t~dag~g~l~v~v~gp~~-~~~~v~d~~dGty~v~Y~p~~~G~y~I 80 (111)
T 2di8_A 4 GSSGIGDARRAKVY--GRGLSEGRTFEMSDFIVDTRDAGYGGISLAVEGPSK-VDIQTEDLEDGTCKVSYFPTVPGVYIV 80 (111)
T ss_dssp CSCCBCCGGGCEEE--ESTTTEEETTCCEEEEEECTTTCBCCEEEEEESSSC-CCEECCBCTTSCEEEEECCCSCSEEEE
T ss_pred cccCCCCCceEEEE--CCCccceEcCCCEEEEEEECCCCCCceEEEEEcCCC-ceEEEEECCCCEEEEEEEeCCCeEEEE
Confidence 34567889998886 5777766666889999998887 7888888853211 11111023342 456666 55678888
Q ss_pred EEEE
Q 029445 138 HVHC 141 (193)
Q Consensus 138 hVyc 141 (193)
+|.+
T Consensus 81 ~V~~ 84 (111)
T 2di8_A 81 STKF 84 (111)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7764
No 9
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=19.92 E-value=51 Score=23.08 Aligned_cols=18 Identities=22% Similarity=0.340 Sum_probs=12.8
Q ss_pred cccccceEEEEEEecCCee
Q 029445 117 GWYIKDDVVAEWKKVRDDM 135 (193)
Q Consensus 117 ~w~~RDEVlAEW~~~~g~~ 135 (193)
.|.--|+|+|.| .++.-|
T Consensus 6 ~~~vGd~vmArW-~D~~yY 23 (67)
T 3p8d_A 6 EFQINEQVLACW-SDCRFY 23 (67)
T ss_dssp CCCTTCEEEEEC-TTSCEE
T ss_pred ccccCCEEEEEc-CCCCEe
Confidence 577789999999 444333
No 10
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=18.53 E-value=59 Score=22.98 Aligned_cols=17 Identities=18% Similarity=0.264 Sum_probs=11.9
Q ss_pred cceEEEEEEecCCeeEEEE
Q 029445 121 KDDVVAEWKKVRDDMCLHV 139 (193)
Q Consensus 121 RDEVlAEW~~~~g~~~LhV 139 (193)
=++|||+|. +|.|+|=-
T Consensus 11 GqdVLarWs--DGlfYlgt 27 (63)
T 2e5q_A 11 GQYVLCRWT--DGLYYLGK 27 (63)
T ss_dssp TCEEEEECT--TSCEEEEE
T ss_pred CCEEEEEec--CCCEEEEE
Confidence 489999996 45565543
Done!