BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029446
(193 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1RRG|B Chain B, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1R8Q|A Chain A, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1R8Q|B Chain B, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1RRF|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Monomeric Crystal Form
Length = 181
Score = 244 bits (623), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 108/181 (59%), Positives = 142/181 (78%)
Query: 1 MGQAFRKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKN 60
MG F LF FG EMR++M+GLDAAGKTTILYKL +GE+++T+PTIGFNVE V+YKN
Sbjct: 1 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 61 VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSV 120
+ FTVWDVGGQ+K+RPLWRHYF NT GLI+VVDS DRER+ +A++E ++ + + ++V
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV 120
Query: 121 ILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEM 180
+LVFANKQD+ AM E+ + LGL L++R W+IQ TCA GDGLYEGLDWL++ L+
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 180
Query: 181 R 181
+
Sbjct: 181 K 181
>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
pdb|1HUR|B Chain B, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
Length = 180
Score = 242 bits (617), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 107/180 (59%), Positives = 141/180 (78%)
Query: 2 GQAFRKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNV 61
G F LF FG EMR++M+GLDAAGKTTILYKL +GE+++T+PTIGFNVE V+YKN+
Sbjct: 1 GNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNI 60
Query: 62 IFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVI 121
FTVWDVGGQ+K+RPLWRHYF NT GLI+VVDS DRER+ +A++E ++ + + ++V+
Sbjct: 61 SFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVL 120
Query: 122 LVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEMR 181
LVFANKQD+ AM E+ + LGL L++R W+IQ TCA GDGLYEGLDWL++ L+ +
Sbjct: 121 LVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQK 180
>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
pdb|3AQ4|B Chain B, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
Length = 184
Score = 238 bits (606), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 105/177 (59%), Positives = 139/177 (78%)
Query: 1 MGQAFRKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKN 60
MG +F KLF F EMR++M+GLDAAGKTTILYKL +GE+++T+PTIGFNVE V+YKN
Sbjct: 4 MGLSFGKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 63
Query: 61 VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSV 120
+ FTVWDVGGQ+K+RPLWRHYF NT GLI+VVDS DR+R+ +A+ E ++ + + ++V
Sbjct: 64 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 123
Query: 121 ILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTL 177
+LVFANKQD+ AM E+ + LGL L+ R W+IQ TCA G+GLYEGLDWL++ +
Sbjct: 124 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 180
>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2
(Scarf2) Complexed With Gdp-3'p At 1.6a Resolution
Length = 181
Score = 237 bits (605), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 106/178 (59%), Positives = 140/178 (78%)
Query: 1 MGQAFRKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKN 60
MG KLF FGN EMR++M+GLD AGKTT+LYKL +GEV++T+PTIGFNVE VQYKN
Sbjct: 1 MGLYASKLFSNLFGNKEMRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVETVQYKN 60
Query: 61 VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSV 120
+ FTVWDVGGQ+++R LWRHY+ NT+G+I+V+DS DR RIG+A++ Q ++ + + N+V
Sbjct: 61 ISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVIDSNDRSRIGEAREVMQRMLNEDELRNAV 120
Query: 121 ILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLK 178
LVFANKQD+ AM+ E+ E LGL ++NR W IQ TCA G+GLYEGL+WL++ LK
Sbjct: 121 WLVFANKQDLPEAMSAAEITEKLGLHSIRNRPWFIQSTCATSGEGLYEGLEWLSNNLK 178
>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein,
Gdp- Bound
Length = 181
Score = 236 bits (602), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 104/172 (60%), Positives = 138/172 (80%)
Query: 7 KLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVW 66
KLF FGN EMR++M+GLD AGKTT+LYKL +GEV++T+PTIGFNVE VQYKN+ FTVW
Sbjct: 7 KLFSNLFGNKEMRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVETVQYKNISFTVW 66
Query: 67 DVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFAN 126
DVGGQ+++R LWRHY+ NT+G+I+VVDS DR RIG+A++ Q ++ + + N+ LVFAN
Sbjct: 67 DVGGQDRIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVFAN 126
Query: 127 KQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLK 178
KQD+ AM+ E+ E LGL ++NR W IQ TCA G+GLYEGL+WL+++LK
Sbjct: 127 KQDLPEAMSAAEITEKLGLHSIRNRPWFIQATCATSGEGLYEGLEWLSNSLK 178
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
Length = 329
Score = 236 bits (601), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 103/170 (60%), Positives = 137/170 (80%)
Query: 12 FFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQ 71
FG EMR++M+GLDAAGKTTILYKL +GE+++T+PTIGFNVE V+YKN+ FTVWDVGGQ
Sbjct: 160 LFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQ 219
Query: 72 EKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMK 131
+K+RPLWRHYF NT GLI+VVDS DRER+ +A++E ++ + + ++V+LVFANKQD+
Sbjct: 220 DKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLP 279
Query: 132 GAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEMR 181
AM E+ + LGL L++R W+IQ TCA GDGLYEGLDWL++ L+ +
Sbjct: 280 NAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQK 329
>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
pdb|3RD1|B Chain B, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
Length = 178
Score = 233 bits (593), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 107/178 (60%), Positives = 138/178 (77%), Gaps = 4/178 (2%)
Query: 1 MGQAFRKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKN 60
MG KL G EMR++M+GLDAAGKT+ILYKL +GE+++T+PTIGFNVE V+YKN
Sbjct: 5 MGSWLSKLL----GKKEMRILMVGLDAAGKTSILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 61 VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSV 120
+ FTVWDVGGQ+K+RPLWRHY+ NT +I+VVDS DR+RIG+A++E ++ + M N++
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYYQNTQAIIFVVDSNDRDRIGEAREELMKMLNEDEMRNAI 120
Query: 121 ILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLK 178
+LVFANK D+ AM+ EV E LGL +KNRKW+ Q +CA GDGLYEGLDWLA LK
Sbjct: 121 LLVFANKHDLPQAMSISEVTEKLGLQTIKNRKWYCQTSCATNGDGLYEGLDWLADNLK 178
>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By
Human Arf6-Gtp
pdb|2A5F|A Chain A, Cholera Toxin A1 Subunit Bound To Its Substrate, Nad+, And
Its Human Protein Activator, Arf6
pdb|2J5X|A Chain A, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
pdb|2J5X|B Chain B, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
Length = 175
Score = 231 bits (590), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 104/172 (60%), Positives = 132/172 (76%)
Query: 7 KLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVW 66
K+ FGN EMR++MLGLDAAGKTTILYKL +G+ ++T+PT+GFNVE V YKNV F VW
Sbjct: 3 KVLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVW 62
Query: 67 DVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFAN 126
DVGGQ+K+RPLWRHY+ T GLI+VVD DR+RI +A+QE II D M +++IL+FAN
Sbjct: 63 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 122
Query: 127 KQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLK 178
KQD+ AM P E+ E LGL +++R W++Q +CA GDGLYEGL WL S K
Sbjct: 123 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYK 174
>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum
Adp-Ribosylation Factor 1
Length = 181
Score = 231 bits (590), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 103/181 (56%), Positives = 139/181 (76%)
Query: 1 MGQAFRKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKN 60
MG +LF+ F ++R++M+GLDAAGKTTILYK+ +GEV++T+PTIGFNVE V+++N
Sbjct: 1 MGLYVSRLFNRLFQKKDVRILMVGLDAAGKTTILYKVKLGEVVTTIPTIGFNVETVEFRN 60
Query: 61 VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSV 120
+ FTVWDVGGQ+K+RPLWRHY++NTDGLI+VVDS DRERI A++E +I + + +++
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYYSNTDGLIFVVDSNDRERIDDAREELHRMINEEELKDAI 120
Query: 121 ILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEM 180
ILVFANKQD+ AM+ EV E L L ++ R W IQ TCA +GDGLYEG DWL + L
Sbjct: 121 ILVFANKQDLPNAMSAAEVTEKLHLNTIRERNWFIQSTCATRGDGLYEGFDWLTTHLNNA 180
Query: 181 R 181
+
Sbjct: 181 K 181
>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp
Length = 174
Score = 231 bits (590), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 104/172 (60%), Positives = 132/172 (76%)
Query: 7 KLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVW 66
K+ FGN EMR++MLGLDAAGKTTILYKL +G+ ++T+PT+GFNVE V YKNV F VW
Sbjct: 2 KVLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVW 61
Query: 67 DVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFAN 126
DVGGQ+K+RPLWRHY+ T GLI+VVD DR+RI +A+QE II D M +++IL+FAN
Sbjct: 62 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 121
Query: 127 KQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLK 178
KQD+ AM P E+ E LGL +++R W++Q +CA GDGLYEGL WL S K
Sbjct: 122 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYK 173
>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound
Conformation
Length = 181
Score = 231 bits (589), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 103/172 (59%), Positives = 136/172 (79%)
Query: 7 KLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVW 66
KLF FGN EMR++M+GLD AGKTT+LYKL +GEV++T+PTIGFNVE VQY N+ FTVW
Sbjct: 7 KLFSNLFGNKEMRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVECVQYCNISFTVW 66
Query: 67 DVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFAN 126
DVGGQ+++R LWRHY+ NT+G+I+VVDS DR RIG+A++ Q ++ + + N+ LVFAN
Sbjct: 67 DVGGQDRIRSLWRHYYCNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELCNAAWLVFAN 126
Query: 127 KQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLK 178
KQD+ AM+ E+ E LGL ++NR W IQ TCA G+GLYEGL+WL++ LK
Sbjct: 127 KQDLPEAMSAAEITEKLGLHSIRNRPWFIQATCATSGEGLYEGLEWLSNCLK 178
>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With
Brefeldin A
pdb|1R8S|A Chain A, Arf1[delta1-17]-Gdp In Complex With A Sec7 Domain Carrying
The Mutation Of The Catalytic Glutamate To Lysine
pdb|1S9D|A Chain A, Arf1[delta 1-17]-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1U81|A Chain A, Delta-17 Human Adp Ribosylation Factor 1 Complexed With
Gdp
Length = 164
Score = 230 bits (587), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 100/164 (60%), Positives = 134/164 (81%)
Query: 18 MRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPL 77
MR++M+GLDAAGKTTILYKL +GE+++T+PTIGFNVE V+YKN+ FTVWDVGGQ+K+RPL
Sbjct: 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL 60
Query: 78 WRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPM 137
WRHYF NT GLI+VVDS DRER+ +A++E ++ + + ++V+LVFANKQD+ AM
Sbjct: 61 WRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAA 120
Query: 138 EVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEMR 181
E+ + LGL L++R W+IQ TCA GDGLYEGLDWL++ L+ +
Sbjct: 121 EITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQK 164
>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5
Length = 192
Score = 230 bits (586), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 102/172 (59%), Positives = 137/172 (79%)
Query: 8 LFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWD 67
LF FG +MR++M+GLDAAGKTTILYKL +GE+++T+PTIGFNVE V+YKN+ FTVWD
Sbjct: 20 LFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWD 79
Query: 68 VGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANK 127
VGGQ+K+RPLWRHYF NT GLI+VVDS DRER+ ++ E Q ++++ + ++V+LVFANK
Sbjct: 80 VGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANK 139
Query: 128 QDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKE 179
QDM AM E+ + LGL L++R W++Q TCA +G GLY+GLDWL+ L +
Sbjct: 140 QDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELSK 191
>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4
pdb|1Z6X|B Chain B, Structure Of Human Adp-Ribosylation Factor 4
Length = 180
Score = 229 bits (585), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 103/179 (57%), Positives = 137/179 (76%)
Query: 1 MGQAFRKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKN 60
MG LF FG +MR++M+GLDAAGKTTILYKL +GE+++T+PTIGFNVE V+YKN
Sbjct: 1 MGLTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 61 VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSV 120
+ FTVWDVGGQ+++RPLW+HYF NT GLI+VVDS DRERI + E Q ++ + ++V
Sbjct: 61 ICFTVWDVGGQDRIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDELRDAV 120
Query: 121 ILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKE 179
+L+FANKQD+ AM E+ + LGL L+NR W++Q TCA +G GLYEGLDWL++ L +
Sbjct: 121 LLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNELSK 179
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 229 bits (584), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 103/172 (59%), Positives = 130/172 (75%)
Query: 13 FGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQE 72
N EMR++MLGLDAAGKTTILYKL +G+ ++T+PT+GFNVE V YKNV F VWDVGGQ+
Sbjct: 318 LSNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQD 377
Query: 73 KLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKG 132
K+RPLWRHY+ T GLI+VVD DR+RI +A+QE II D M +++IL+FANKQD+
Sbjct: 378 KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 437
Query: 133 AMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEMRAAG 184
AM P E+ E LGL +++R W++Q +CA GDGLYEGL WL S K AA
Sbjct: 438 AMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYKSKLAAA 489
>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l)
Length = 175
Score = 228 bits (581), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 103/172 (59%), Positives = 131/172 (76%)
Query: 7 KLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVW 66
K+ FGN EMR++MLGLDAAGKTTILYKL +G+ ++T+PT+GFNVE V YKNV F VW
Sbjct: 3 KVLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVW 62
Query: 67 DVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFAN 126
DVGG +K+RPLWRHY+ T GLI+VVD DR+RI +A+QE II D M +++IL+FAN
Sbjct: 63 DVGGLDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 122
Query: 127 KQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLK 178
KQD+ AM P E+ E LGL +++R W++Q +CA GDGLYEGL WL S K
Sbjct: 123 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYK 174
>pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex
With Arf1 Gtp Form
pdb|1O3Y|A Chain A, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|1O3Y|B Chain B, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|2J59|A Chain A, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|B Chain B, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|C Chain C, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|D Chain D, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|E Chain E, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|F Chain F, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
Length = 166
Score = 227 bits (578), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 99/164 (60%), Positives = 133/164 (81%)
Query: 18 MRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPL 77
MR++M+GLDAAGKTTILYKL +GE+++T+PTIGFNVE V+YKN+ FTVWDVGG +K+RPL
Sbjct: 3 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGLDKIRPL 62
Query: 78 WRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPM 137
WRHYF NT GLI+VVDS DRER+ +A++E ++ + + ++V+LVFANKQD+ AM
Sbjct: 63 WRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAA 122
Query: 138 EVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEMR 181
E+ + LGL L++R W+IQ TCA GDGLYEGLDWL++ L+ +
Sbjct: 123 EITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQK 166
>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
pdb|3TJZ|D Chain D, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
Length = 164
Score = 222 bits (566), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 97/161 (60%), Positives = 131/161 (81%)
Query: 18 MRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPL 77
MR++M+GLD AGKTT+LYKL +GEV++T+PTIGFNVE VQYKN+ FTVWDVGGQ+++R L
Sbjct: 1 MRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVETVQYKNISFTVWDVGGQDRIRSL 60
Query: 78 WRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPM 137
WRHY+ NT+G+I+VVDS DR RIG+A++ Q ++ + + N+ LVFANKQD+ AM+
Sbjct: 61 WRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVFANKQDLPEAMSAA 120
Query: 138 EVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLK 178
E+ E LGL ++NR W IQ TCA G+GLYEGL+WL+++LK
Sbjct: 121 EITEKLGLHSIRNRPWFIQATCATSGEGLYEGLEWLSNSLK 161
>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp
pdb|3N5C|B Chain B, Crystal Structure Of Arf6delta13 Complexed With Gdp
Length = 162
Score = 221 bits (563), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 99/161 (61%), Positives = 126/161 (78%)
Query: 18 MRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPL 77
MR++MLGLDAAGKTTILYKL +G+ ++T+PT+GFNVE V YKNV F VWDVGGQ+K+RPL
Sbjct: 1 MRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPL 60
Query: 78 WRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPM 137
WRHY+ T GLI+VVD DR+RI +A+QE II D M +++IL+FANKQD+ AM P
Sbjct: 61 WRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPH 120
Query: 138 EVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLK 178
E+ E LGL +++R W++Q +CA GDGLYEGL WL S K
Sbjct: 121 EIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYK 161
>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|C Chain C, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|E Chain E, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|G Chain G, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
Length = 172
Score = 221 bits (562), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 99/164 (60%), Positives = 127/164 (77%)
Query: 17 EMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRP 76
EMR++MLGLDAAGKTTILYKL +G+ ++T+PT+GFNVE V YKNV F VWDVGG +K+RP
Sbjct: 2 EMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGLDKIRP 61
Query: 77 LWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP 136
LWRHY+ T GLI+VVD DR+RI +A+QE II D M +++IL+FANKQD+ AM P
Sbjct: 62 LWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKP 121
Query: 137 MEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEM 180
E+ E LGL +++R W++Q +CA GDGLYEGL WL S K +
Sbjct: 122 HEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYKSL 165
>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|B Chain B, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|E Chain E, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
Length = 165
Score = 220 bits (561), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 99/162 (61%), Positives = 126/162 (77%)
Query: 17 EMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRP 76
EMR++MLGLDAAGKTTILYKL +G+ ++T+PT+GFNVE V YKNV F VWDVGG +K+RP
Sbjct: 3 EMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGLDKIRP 62
Query: 77 LWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP 136
LWRHY+ T GLI+VVD DR+RI +A+QE II D M +++IL+FANKQD+ AM P
Sbjct: 63 LWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKP 122
Query: 137 MEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLK 178
E+ E LGL +++R W++Q +CA GDGLYEGL WL S K
Sbjct: 123 HEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYK 164
>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex
pdb|4FME|F Chain F, Espg-Rab1-Arf6 Complex
Length = 160
Score = 219 bits (559), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 98/158 (62%), Positives = 125/158 (79%)
Query: 18 MRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPL 77
MR++MLGLDAAGKTTILYKL +G+ ++T+PT+GFNVE V YKNV F VWDVGGQ+K+RPL
Sbjct: 1 MRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPL 60
Query: 78 WRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPM 137
WRHY+ T GLI+VVD DR+RI +A+QE II D M +++IL+FANKQD+ AM P
Sbjct: 61 WRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPH 120
Query: 138 EVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAS 175
E+ E LGL +++R W++Q +CA GDGLYEGL WL S
Sbjct: 121 EIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTS 158
>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex
Length = 162
Score = 212 bits (539), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 95/160 (59%), Positives = 122/160 (76%)
Query: 19 RVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLW 78
R++ LGLDAAGKTTILYKL +G+ ++T+PT+GFNVE V YKNV F VWDVGGQ+K+RPLW
Sbjct: 2 RILXLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLW 61
Query: 79 RHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPME 138
RHY+ T GLI+VVD DR+RI +A+QE II D +++IL+FANKQD+ A P E
Sbjct: 62 RHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREXRDAIILIFANKQDLPDAXKPHE 121
Query: 139 VCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLK 178
+ E LGL +++R W++Q +CA GDGLYEGL WL S K
Sbjct: 122 IQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYK 161
>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|B Chain B, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|C Chain C, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|D Chain D, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
Length = 165
Score = 208 bits (529), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 95/162 (58%), Positives = 125/162 (77%)
Query: 17 EMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRP 76
EMR+++LGLD AGKTTILY+L +GEV++T+PTIGFNVE V YKN+ F VWD+GGQ +RP
Sbjct: 2 EMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRP 61
Query: 77 LWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP 136
WR Y++NTD +IYVVDS DR+RIG +K E A++++ + ++++VFANKQDM+ AMTP
Sbjct: 62 YWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTP 121
Query: 137 MEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLK 178
E+ LGL LK+RKW I T A KG GL E ++WL TLK
Sbjct: 122 SEMANALGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLK 163
>pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
pdb|4DCN|B Chain B, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
Length = 166
Score = 204 bits (518), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 94/165 (56%), Positives = 124/165 (75%)
Query: 14 GNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEK 73
G EMR+++LGLD AGKTTILY+L +GEV++T+PTIGFNVE V YKN+ F VWD+GG
Sbjct: 1 GTREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTS 60
Query: 74 LRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA 133
+RP WR Y++NTD +IYVVDS DR+RIG +K E A++++ + ++++VFANKQDM+ A
Sbjct: 61 IRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQA 120
Query: 134 MTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLK 178
MT E+ LGL LK+RKW I T A KG GL E ++WL TLK
Sbjct: 121 MTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLK 165
>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
pdb|1MOZ|B Chain B, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
Length = 183
Score = 199 bits (505), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 90/180 (50%), Positives = 129/180 (71%), Gaps = 1/180 (0%)
Query: 1 MGQAFRKLFDVFFG-NSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYK 59
MG F +FD +G N E+R+++LGLD AGKTTILY+L IGEV++T PTIGFNVE + YK
Sbjct: 1 MGNIFSSMFDKLWGSNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYK 60
Query: 60 NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNS 119
N+ VWD+GGQ +RP WR Y+ +T +I+VVDS D++R+ A +E ++++ + ++
Sbjct: 61 NLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDA 120
Query: 120 VILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKE 179
+LVFANKQD GA++ EV + L L +LK+R W I + A+KG+G+ EGLDWL +KE
Sbjct: 121 ALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIKE 180
>pdb|1UPT|A Chain A, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|C Chain C, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|E Chain E, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|G Chain G, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
Length = 171
Score = 183 bits (465), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 90/162 (55%), Positives = 117/162 (72%)
Query: 17 EMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRP 76
E R+++LGLD AGKTTILY+L +GEV++T+PTIGFNVE V YKN+ F VWD+GG +RP
Sbjct: 7 EXRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRP 66
Query: 77 LWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP 136
WR Y++NTD +IYVVDS DR+RIG +K E A +++ + ++++VFANKQD + A T
Sbjct: 67 YWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAXLEEEELRKAILVVFANKQDXEQAXTS 126
Query: 137 MEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLK 178
E LGL LK+RKW I T A KG GL E +WL TLK
Sbjct: 127 SEXANSLGLPALKDRKWQIFKTSATKGTGLDEAXEWLVETLK 168
>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8
Length = 179
Score = 183 bits (465), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 86/177 (48%), Positives = 120/177 (67%), Gaps = 1/177 (0%)
Query: 1 MGQAFRKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKN 60
MG F KL+ F N E +V+++GLD AGKTTILY+ + EV+ T PTIG NVE++ KN
Sbjct: 1 MGLIFAKLWS-LFCNQEHKVIIVGLDNAGKTTILYQFLMNEVVHTSPTIGSNVEEIVVKN 59
Query: 61 VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSV 120
F +WD+GGQE LR W Y++NT+ +I VVDS+DRER+ K+E ++ + +
Sbjct: 60 THFLMWDIGGQESLRSSWNTYYSNTEFIILVVDSIDRERLAITKEELYRMLAHEDLRKAA 119
Query: 121 ILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTL 177
+L+FANKQDMKG MT E+ + L L +K+ WHIQ CAL G+GL +GL+W+ S +
Sbjct: 120 VLIFANKQDMKGCMTAAEISKYLTLSSIKDHPWHIQSCCALTGEGLCQGLEWMTSRI 176
>pdb|2X77|A Chain A, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1.
pdb|2X77|B Chain B, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1
Length = 189
Score = 176 bits (446), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 86/176 (48%), Positives = 127/176 (72%)
Query: 4 AFRKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIF 63
+ ++ + + ++RV+MLGLD AGKT+ILY+LH+G+V++TVPT+G N+E +QYKN+ F
Sbjct: 9 SLKQTLGLLPADRKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVNLETLQYKNISF 68
Query: 64 TVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILV 123
VWD+GGQ +RP WR YF++TD +IYVVDS DR+R+G AK E A++ + + S++L+
Sbjct: 69 EVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLI 128
Query: 124 FANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKE 179
FANKQD+ A + E+ E LG+ + NR W I + + GDGL EG+DWL L+E
Sbjct: 129 FANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLVERLRE 184
>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5
Length = 187
Score = 173 bits (439), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 82/178 (46%), Positives = 118/178 (66%), Gaps = 1/178 (0%)
Query: 1 MGQAFRKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKN 60
MG F +++ F + E +V+++GLD AGKTTILY+ + EV+ T PTIG NVE++ N
Sbjct: 1 MGILFTRIWR-LFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINN 59
Query: 61 VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSV 120
F +WD+GGQE LR W Y+ NT+ +I VVDS DRERI ++E ++ + +
Sbjct: 60 TRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAG 119
Query: 121 ILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLK 178
+L+FANKQD+K MT E+ + L L +K+ +WHIQ CAL G+GL +GL+W+ S LK
Sbjct: 120 LLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLK 177
>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5
pdb|1Z6Y|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5
Length = 179
Score = 173 bits (438), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 82/178 (46%), Positives = 119/178 (66%), Gaps = 1/178 (0%)
Query: 1 MGQAFRKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKN 60
MG F +++ +F + E +V+++GLD AGKTTILY+ + EV+ T PTIG NVE++ N
Sbjct: 1 MGILFTRIWRLF-NHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINN 59
Query: 61 VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSV 120
F +WD+GGQE LR W Y+ NT+ +I VVDS DRERI ++E ++ + +
Sbjct: 60 TRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAG 119
Query: 121 ILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLK 178
+L+FANKQD+K MT E+ + L L +K+ +WHIQ CAL G+GL +GL+W+ S LK
Sbjct: 120 LLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLK 177
>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
(Casp Target)
Length = 181
Score = 169 bits (427), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 78/164 (47%), Positives = 111/164 (67%)
Query: 14 GNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEK 73
G+ E +V+++GLD AGKTTILY+ + EV+ T PTIG NVE++ N F +WD+GGQE
Sbjct: 18 GSQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQES 77
Query: 74 LRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA 133
LR W Y+ NT+ +I VVDS DRERI ++E ++ + + +L+FANKQD+K
Sbjct: 78 LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC 137
Query: 134 MTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTL 177
MT E+ + L L +K+ +WHIQ CAL G+GL +GL+W+ S L
Sbjct: 138 MTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL 181
>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|C Chain C, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|D Chain D, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
Length = 183
Score = 168 bits (426), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 78/165 (47%), Positives = 111/165 (67%)
Query: 14 GNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEK 73
+ E +V+++GLD AGKTTILY+ + EV+ T PTIG NVE++ N F +WD+GGQE
Sbjct: 19 SHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQES 78
Query: 74 LRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA 133
LR W Y+ NT+ +I VVDS DRERI ++E ++ + + +L+FANKQD+K
Sbjct: 79 LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC 138
Query: 134 MTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLK 178
MT E+ + L L +K+ +WHIQ CAL G+GL +GL+W+ S LK
Sbjct: 139 MTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLK 183
>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native)
Length = 186
Score = 157 bits (398), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 70/157 (44%), Positives = 110/157 (70%)
Query: 17 EMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRP 76
E+R++MLGLD AGKTTIL K + +V + PT+GFN++ ++++ +WDVGGQ+ LR
Sbjct: 18 ELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRS 77
Query: 77 LWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP 136
WR+YF +TDGLI+VVDS DR+R+ ++E Q+++ + + + +L+FANKQD+ GA++
Sbjct: 78 YWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSX 137
Query: 137 MEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 173
+ E L L +++ W IQG A+ G+ L G+DWL
Sbjct: 138 NAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWL 174
>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1
Length = 186
Score = 157 bits (398), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 70/157 (44%), Positives = 110/157 (70%)
Query: 17 EMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRP 76
E+R++MLGLD AGKTTIL K + +V + PT+GFN++ ++++ +WDVGGQ+ LR
Sbjct: 18 ELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRS 77
Query: 77 LWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP 136
WR+YF +TDGLI+VVDS DR+R+ ++E Q+++ + + + +L+FANKQD+ GA++
Sbjct: 78 YWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSC 137
Query: 137 MEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 173
+ E L L +++ W IQG A+ G+ L G+DWL
Sbjct: 138 NAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWL 174
>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1
pdb|3DOF|A Chain A, Complex Of Arl2 And Bart, Crystal Form 2
Length = 192
Score = 155 bits (392), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 69/157 (43%), Positives = 110/157 (70%)
Query: 17 EMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRP 76
E+R++MLGLD AGKTTIL K + ++ + PT+GFN++ ++++ +WDVGGQ+ LR
Sbjct: 16 ELRLLMLGLDNAGKTTILKKFNGEDIDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRS 75
Query: 77 LWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP 136
WR+YF +TDGLI+VVDS DR+R+ ++E Q+++ + + + +L+FANKQD+ GA++
Sbjct: 76 YWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSS 135
Query: 137 MEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 173
+ E L L +++ W IQG A+ G+ L G+DWL
Sbjct: 136 NAIREVLELDSIRSHHWCIQGCSAVTGENLLPGIDWL 172
>pdb|4GOK|B Chain B, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
pdb|4GOK|A Chain A, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
Length = 169
Score = 152 bits (384), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 68/156 (43%), Positives = 108/156 (69%)
Query: 18 MRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPL 77
+R++MLGLD AGKTTIL K + +V + PT+GFN++ ++++ +WDVGG + LR
Sbjct: 2 LRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGLKSLRSY 61
Query: 78 WRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPM 137
WR+YF +TDGLI+VVDS DR+R+ ++E Q+++ + + + +L+FANKQD+ GA++
Sbjct: 62 WRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCN 121
Query: 138 EVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 173
+ E L L +++ W IQG A+ G+ L G+DWL
Sbjct: 122 AIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWL 157
>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gdp-Alf4
Length = 164
Score = 151 bits (382), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 72/164 (43%), Positives = 107/164 (65%)
Query: 14 GNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEK 73
G SE+R+++LGLD AGKTT+L +L ++ PT GFN++ VQ + VWD+GGQ K
Sbjct: 1 GGSEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRK 60
Query: 74 LRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA 133
+RP WR YF NTD LIYV+DS DR+R + QE ++++ + +L+FANKQD+ A
Sbjct: 61 IRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTA 120
Query: 134 MTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTL 177
E+ EGL L +++R W IQ AL G+G+ +G++W+ +
Sbjct: 121 APASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 164
>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
pdb|4GOJ|B Chain B, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
Length = 189
Score = 149 bits (375), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 70/163 (42%), Positives = 106/163 (65%)
Query: 15 NSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKL 74
+ E+R+++LGLD AGKTT+L +L ++ PT GFN++ VQ + VWD+GGQ K+
Sbjct: 15 DQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKI 74
Query: 75 RPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM 134
RP WR YF NTD LIYV+DS DR+R + QE ++++ + +L+FANKQD+ A
Sbjct: 75 RPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAA 134
Query: 135 TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTL 177
E+ EGL L +++R W IQ AL G+G+ +G++W+ +
Sbjct: 135 PASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 177
>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp
Length = 181
Score = 149 bits (375), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 70/163 (42%), Positives = 106/163 (65%)
Query: 15 NSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKL 74
+ E+R+++LGLD AGKTT+L +L ++ PT GFN++ VQ + VWD+GGQ K+
Sbjct: 14 DQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKI 73
Query: 75 RPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM 134
RP WR YF NTD LIYV+DS DR+R + QE ++++ + +L+FANKQD+ A
Sbjct: 74 RPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAA 133
Query: 135 TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTL 177
E+ EGL L +++R W IQ AL G+G+ +G++W+ +
Sbjct: 134 PASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 176
>pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gppnhp
Length = 164
Score = 148 bits (373), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 71/164 (43%), Positives = 106/164 (64%)
Query: 14 GNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEK 73
G SE+R+++LGLD AGKTT+L +L ++ PT GFN++ VQ + VWD+GG K
Sbjct: 1 GGSEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGLRK 60
Query: 74 LRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA 133
+RP WR YF NTD LIYV+DS DR+R + QE ++++ + +L+FANKQD+ A
Sbjct: 61 IRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTA 120
Query: 134 MTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTL 177
E+ EGL L +++R W IQ AL G+G+ +G++W+ +
Sbjct: 121 APASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 164
>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet)
Length = 186
Score = 143 bits (361), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 64/148 (43%), Positives = 100/148 (67%)
Query: 26 DAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNT 85
D AGKTTIL K + +V + PT+GFN++ ++++ +WDVGGQ+ LR WR+YF +T
Sbjct: 27 DNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFEST 86
Query: 86 DGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGL 145
DGLI+VVDS DR+R ++E Q+++ + + + +L+FANKQD+ GA++ + E L L
Sbjct: 87 DGLIWVVDSADRQRXQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSXNAIQEALEL 146
Query: 146 FDLKNRKWHIQGTCALKGDGLYEGLDWL 173
+++ W IQG A+ G+ L G+DWL
Sbjct: 147 DSIRSHHWRIQGCSAVTGEDLLPGIDWL 174
>pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|B Chain B, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|C Chain C, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
Length = 190
Score = 138 bits (348), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 70/173 (40%), Positives = 112/173 (64%), Gaps = 4/173 (2%)
Query: 14 GNSEMRVVMLGLDAAGKTTILYKLHIGEVLST--VPTIGFNVEKVQYKNVIFTVWDVGGQ 71
G+ E+ V+ LGLD +GKTTI+ KL S +PTIGF++EK + ++ FTV+D+ GQ
Sbjct: 18 GSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKSSSLSFTVFDMSGQ 77
Query: 72 EKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNS--VILVFANKQD 129
+ R LW HY+ +I+V+DS DR R+ AK+E ++ P + + IL FANK D
Sbjct: 78 GRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMD 137
Query: 130 MKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEMRA 182
++ A+T ++V + L L ++K++ WHI + A+KG+GL EG+DWL ++ ++
Sbjct: 138 LRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQDQIQTVKT 190
>pdb|4BAS|A Chain A, Structure Of The Arl6 Bbs3 Small Gtpase From Trypanosoma
Brucei With Bound Nucleotide Analogue Gppnp
Length = 199
Score = 112 bits (280), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 67/171 (39%), Positives = 97/171 (56%), Gaps = 10/171 (5%)
Query: 16 SEMRVVMLGLDAAGKTTILYKLHIGEVLST--VPTIGFNVEKVQYKNVIFTVWDVGGQEK 73
++++VVM GLD +GKTTI+ ++ + S T+G+NVE + V FTV+D+GG +K
Sbjct: 16 TKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVETFEKGRVAFTVFDMGGAKK 75
Query: 74 LRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSV-------ILVFAN 126
R LW Y++N D +I+VVDS D R+ K E QA++K + + L FAN
Sbjct: 76 FRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFAN 135
Query: 127 KQDMKGAMTPMEVCEGLGLFDL-KNRKWHIQGTCALKGDGLYEGLDWLAST 176
K D GA T E+ E L L L + + I + LKG G++EG WL T
Sbjct: 136 KMDAAGAKTAAELVEILDLTTLMGDHPFVIFASNGLKGTGVHEGFSWLQET 186
>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
(Arl10b)
Length = 193
Score = 105 bits (262), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 88/166 (53%), Gaps = 1/166 (0%)
Query: 9 FDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEV-LSTVPTIGFNVEKVQYKNVIFTVWD 67
F F EM + ++GL +GKTT + + G+ +PT+GFN+ K+ NV +WD
Sbjct: 23 FKALFWKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWD 82
Query: 68 VGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANK 127
+GGQ + R +W Y ++Y+VD+ D+E+I +K E ++ P + +LV NK
Sbjct: 83 IGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNK 142
Query: 128 QDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 173
+D+ GA+ E+ E + L +++R+ + D + L WL
Sbjct: 143 RDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWL 188
>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
Length = 188
Score = 104 bits (259), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 89/167 (53%), Gaps = 1/167 (0%)
Query: 17 EMRVVMLGLDAAGKTTILYKLHIGEV-LSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLR 75
EM + ++GL +GKTT + + G+ +PT+GFN+ K+ NV +WD+GGQ + R
Sbjct: 22 EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFR 81
Query: 76 PLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT 135
+W Y ++Y+VD+ D+E+I +K E ++ P + +LV NK+D+ GA+
Sbjct: 82 SMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALD 141
Query: 136 PMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEMRA 182
E+ E + L +++R+ + D + L WL K R+
Sbjct: 142 EKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSKSRRS 188
>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c
Length = 186
Score = 101 bits (252), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 86/158 (54%), Gaps = 1/158 (0%)
Query: 17 EMRVVMLGLDAAGKTTILYKLHIGEVLST-VPTIGFNVEKVQYKNVIFTVWDVGGQEKLR 75
EM + ++GL +GKTT + + G+ +PT+GFN+ KV NV +WD+GGQ + R
Sbjct: 22 EMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGNVTIKIWDIGGQPRFR 81
Query: 76 PLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT 135
+W Y + ++Y++D+ DRE+I ++ E ++ P + +LV NK+D+ A+
Sbjct: 82 SMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNKRDLPNALD 141
Query: 136 PMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 173
++ E + L +++R+ + D + L WL
Sbjct: 142 EKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWL 179
>pdb|2GAO|A Chain A, Crystal Structure Of Human Sar1a In Complex With Gdp
pdb|2GAO|B Chain B, Crystal Structure Of Human Sar1a In Complex With Gdp
Length = 208
Score = 93.2 bits (230), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 88/168 (52%), Gaps = 12/168 (7%)
Query: 19 RVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLW 78
++V LGLD AGKTT+L+ L + VPT+ E++ + FT +D+GG E+ R +W
Sbjct: 37 KLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHEQARRVW 96
Query: 79 RHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPME 138
++Y +G++++VD D R+ ++K E A++ D + N IL+ NK D A++ +
Sbjct: 97 KNYLPAINGIVFLVDCADHSRLVESKVELNALMTDETISNVPILILGNKIDRTDAISEEK 156
Query: 139 VCEGLGLF------------DLKNRKWHIQGTCALKGDGLYEGLDWLA 174
+ E GL+ +L R + LK G EG WL+
Sbjct: 157 LREIFGLYGQTTGKGNVTLKELNARPMEVFMCSVLKRQGYGEGFRWLS 204
>pdb|1F6B|A Chain A, Crystal Structure Of Sar1-Gdp Complex
pdb|1F6B|B Chain B, Crystal Structure Of Sar1-Gdp Complex
Length = 198
Score = 92.8 bits (229), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 88/168 (52%), Gaps = 12/168 (7%)
Query: 19 RVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLW 78
++V LGLD AGKTT+L+ L + VPT+ E++ + FT +D+GG + R +W
Sbjct: 27 KLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVW 86
Query: 79 RHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPME 138
++Y +G++++VD D ER+ ++K+E +++ D + N IL+ NK D A++
Sbjct: 87 KNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEER 146
Query: 139 VCEGLGLF------------DLKNRKWHIQGTCALKGDGLYEGLDWLA 174
+ E GL+ +L R + LK G EG W+A
Sbjct: 147 LREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMA 194
>pdb|2FMX|A Chain A, An Open Conformation Of Switch I Revealed By Sar1-gdp
Crystal Structure At Low Mg(2+)
pdb|2FMX|B Chain B, An Open Conformation Of Switch I Revealed By Sar1-gdp
Crystal Structure At Low Mg(2+)
Length = 195
Score = 92.8 bits (229), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 88/168 (52%), Gaps = 12/168 (7%)
Query: 19 RVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLW 78
++V LGLD AGKTT+L+ L + VPT+ E++ + FT +D+GG + R +W
Sbjct: 24 KLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVW 83
Query: 79 RHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPME 138
++Y +G++++VD D ER+ ++K+E +++ D + N IL+ NK D A++
Sbjct: 84 KNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEER 143
Query: 139 VCEGLGLF------------DLKNRKWHIQGTCALKGDGLYEGLDWLA 174
+ E GL+ +L R + LK G EG W+A
Sbjct: 144 LREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMA 191
>pdb|2FA9|A Chain A, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight
Into The Coat-controlled Gtp Hydrolysis In The
Disassembly Of Cop Ii
pdb|2FA9|B Chain B, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight
Into The Coat-controlled Gtp Hydrolysis In The
Disassembly Of Cop Ii
Length = 189
Score = 91.7 bits (226), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 88/168 (52%), Gaps = 12/168 (7%)
Query: 19 RVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLW 78
++V LGLD AGKTT+L+ L + VPT+ E++ + FT +D+GG + R +W
Sbjct: 18 KLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGGIQARRVW 77
Query: 79 RHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPME 138
++Y +G++++VD D ER+ ++K+E +++ D + N IL+ NK D A++
Sbjct: 78 KNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEER 137
Query: 139 VCEGLGLF------------DLKNRKWHIQGTCALKGDGLYEGLDWLA 174
+ E GL+ +L R + LK G EG W+A
Sbjct: 138 LREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMA 185
>pdb|1M2O|B Chain B, Crystal Structure Of The Sec23-Sar1 Complex
pdb|1M2O|D Chain D, Crystal Structure Of The Sec23-Sar1 Complex
Length = 190
Score = 84.7 bits (208), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 87/169 (51%), Gaps = 9/169 (5%)
Query: 15 NSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKL 74
N +++ LGLD AGKTT+L+ L + + PT E++ N+ FT +D+GG +
Sbjct: 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQA 80
Query: 75 RPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM 134
R LW+ YF +G++++VD+ D ER +A+ E A+ + + ++ NK D A+
Sbjct: 81 RRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAV 140
Query: 135 TPMEVCEGLGLFDLKNRKWHIQGT-------CA-LKGDGLYEGLDWLAS 175
+ E+ LGL + + I+G C+ + +G E WL+
Sbjct: 141 SEAELRSALGLLNTTGSQ-RIEGQRPVEVFMCSVVMRNGYLEAFQWLSQ 188
>pdb|2QTV|B Chain B, Structure Of Sec23-Sar1 Complexed With The Active Fragment
Of Sec31
Length = 167
Score = 84.0 bits (206), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 86/165 (52%), Gaps = 9/165 (5%)
Query: 19 RVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLW 78
+++ LGLD AGKTT+L+ L + + PT E++ N+ FT +D+GG + R LW
Sbjct: 3 KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLW 62
Query: 79 RHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPME 138
+ YF +G++++VD+ D ER +A+ E A+ + + ++ NK D A++ E
Sbjct: 63 KDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAE 122
Query: 139 VCEGLGLFDLKNRKWHIQGT-------CA-LKGDGLYEGLDWLAS 175
+ LGL + + I+G C+ + +G E WL+
Sbjct: 123 LRSALGLLNTTGSQ-RIEGQRPVEVFMCSVVMRNGYLEAFQWLSQ 166
>pdb|3AH8|A Chain A, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
Length = 355
Score = 53.9 bits (128), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 50/95 (52%), Gaps = 10/95 (10%)
Query: 46 VPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIY----------VVDSL 95
VPT G ++VIF + DVGGQ R W H F N +++ +V+S
Sbjct: 180 VPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESD 239
Query: 96 DRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDM 130
+ R+ ++K F+ II P+ NS +++F NK+D+
Sbjct: 240 NENRMEESKALFRTIITYPWFQNSSVILFLNKKDL 274
>pdb|2BCJ|Q Chain Q, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
pdb|2RGN|A Chain A, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|D Chain D, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 353
Score = 53.9 bits (128), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 50/95 (52%), Gaps = 10/95 (10%)
Query: 46 VPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIY----------VVDSL 95
VPT G ++VIF + DVGGQ R W H F N +++ +V+S
Sbjct: 178 VPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESD 237
Query: 96 DRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDM 130
+ R+ ++K F+ II P+ NS +++F NK+D+
Sbjct: 238 NENRMEESKALFRTIITYPWFQNSSVILFLNKKDL 272
>pdb|4EKC|A Chain A, Structure Of Human Regulator Of G Protein Signaling 2
(rgs2) In Complex With Murine Galpha-q(r183c)
pdb|4EKC|C Chain C, Structure Of Human Regulator Of G Protein Signaling 2
(rgs2) In Complex With Murine Galpha-q(r183c)
pdb|4EKD|A Chain A, Structure Of Human Regulator Of G Protein Signaling 2
(rgs2) In Complex With Murine Galpha-q(r183c)
Length = 347
Score = 53.9 bits (128), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 50/95 (52%), Gaps = 10/95 (10%)
Query: 46 VPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIY----------VVDSL 95
VPT G ++VIF + DVGGQ R W H F N +++ +V+S
Sbjct: 172 VPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESD 231
Query: 96 DRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDM 130
+ R+ ++K F+ II P+ NS +++F NK+D+
Sbjct: 232 NENRMEESKALFRTIITYPWFQNSSVILFLNKKDL 266
>pdb|3OHM|A Chain A, Crystal Structure Of Activated G Alpha Q Bound To Its
Effector Phospholipase C Beta 3
Length = 327
Score = 53.9 bits (128), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 50/95 (52%), Gaps = 10/95 (10%)
Query: 46 VPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIY----------VVDSL 95
VPT G ++VIF + DVGGQ R W H F N +++ +V+S
Sbjct: 152 VPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESD 211
Query: 96 DRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDM 130
+ R+ ++K F+ II P+ NS +++F NK+D+
Sbjct: 212 NENRMEESKALFRTIITYPWFQNSSVILFLNKKDL 246
>pdb|4GNK|A Chain A, Crystal Structure Of Galphaq In Complex With Full-length
Human Plcbeta3
pdb|4GNK|C Chain C, Crystal Structure Of Galphaq In Complex With Full-length
Human Plcbeta3
Length = 353
Score = 53.5 bits (127), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 50/95 (52%), Gaps = 10/95 (10%)
Query: 46 VPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIY----------VVDSL 95
VPT G ++VIF + DVGGQ R W H F N +++ +V+S
Sbjct: 178 VPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESD 237
Query: 96 DRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDM 130
+ R+ ++K F+ II P+ NS +++F NK+D+
Sbjct: 238 NENRMEESKALFRTIITYPWFQNSSVILFLNKKDL 272
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 62/120 (51%), Gaps = 10/120 (8%)
Query: 19 RVVMLGLDAAGKTTILYKL----HIGEVLSTVPTIGFNVEKVQY--KNVIFTVWDVGGQE 72
+++++G GK+ +L + + + +ST+ + F ++ V+ K V +WD GQE
Sbjct: 10 KLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIG-VDFKIKTVELDGKTVKLQIWDTAGQE 68
Query: 73 KLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVI-LVFANKQDMK 131
+ R + Y+ + G+I V D D+E K Q I D + ++V+ L+ NK D+K
Sbjct: 69 RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEI--DRYATSTVLKLLVGNKCDLK 126
>pdb|3C7K|A Chain A, Molecular Architecture Of Galphao And The Structural Basis
For Rgs16-Mediated Deactivation
pdb|3C7K|C Chain C, Molecular Architecture Of Galphao And The Structural Basis
For Rgs16-Mediated Deactivation
Length = 333
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 58/114 (50%), Gaps = 14/114 (12%)
Query: 41 EVLST-VPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVV-----DS 94
++L T V T G +KN+ F ++DVGGQ R W H F + +I+ V D
Sbjct: 153 DILRTRVKTTGIVETHFTFKNLHFRLFDVGGQRSERKKWIHCFEDVTAIIFCVALSGYDQ 212
Query: 95 LDRE-----RIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA---MTPMEVC 140
+ E R+ ++ F +I + F +++ I++F NK+D+ G +P+ +C
Sbjct: 213 VLHEDETTNRMHESLMLFDSICNNKFFIDTSIILFLNKKDLFGEKIKKSPLTIC 266
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With
Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 62/120 (51%), Gaps = 10/120 (8%)
Query: 19 RVVMLGLDAAGKTTILYKL----HIGEVLSTVPTIGFNVEKVQY--KNVIFTVWDVGGQE 72
+++++G GK+ +L + + + +ST+ + F ++ V+ K V +WD GQE
Sbjct: 10 KLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIG-VDFKIKTVELDGKTVKLQIWDTAGQE 68
Query: 73 KLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVI-LVFANKQDMK 131
+ R + Y+ + G+I V D D+E K Q I D + ++V+ L+ NK D+K
Sbjct: 69 RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEI--DRYATSTVLKLLVGNKCDLK 126
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 62/120 (51%), Gaps = 10/120 (8%)
Query: 19 RVVMLGLDAAGKTTILYKL----HIGEVLSTVPTIGFNVEKVQY--KNVIFTVWDVGGQE 72
+++++G GK+ +L + + + +ST+ + F ++ V+ K V +WD GQE
Sbjct: 23 KLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIG-VDFKIKTVELDGKTVKLQIWDTAGQE 81
Query: 73 KLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVI-LVFANKQDMK 131
+ R + Y+ + G+I V D D+E K Q I D + ++V+ L+ NK D+K
Sbjct: 82 RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEI--DRYATSTVLKLLVGNKCDLK 139
>pdb|1SVK|A Chain A, Structure Of The K180p Mutant Of Gi Alpha Subunit Bound To
Alf4 And Gdp
pdb|1SVS|A Chain A, Structure Of The K180p Mutant Of Gi Alpha Subunit Bound To
Gppnhp
Length = 353
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 57/114 (50%), Gaps = 14/114 (12%)
Query: 41 EVLST-VPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE- 98
+VL T VPT G +K++ F ++DVGGQ R W H F +I+ V D +
Sbjct: 172 DVLRTRVPTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDL 231
Query: 99 ---------RIGKAKQEFQAIIKDPFMLNSVILVFANKQDM---KGAMTPMEVC 140
R+ ++ + F +I + + ++ I++F NK+D+ K +P+ +C
Sbjct: 232 VLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC 285
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 60/137 (43%), Gaps = 6/137 (4%)
Query: 13 FGNSEMRVVMLGLDAAGKTTILYKL---HIGEVLSTVPTIGFNVEKVQY--KNVIFTVWD 67
G+S M+++++G GK+ +L + T I F ++ V K V +WD
Sbjct: 3 LGSSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWD 62
Query: 68 VGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANK 127
GQE+ R + Y+ G+I V D D KQ F+ + + + +L+ NK
Sbjct: 63 TAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKT-VNEHANDEAQLLLVGNK 121
Query: 128 QDMKGAMTPMEVCEGLG 144
DM+ + + E L
Sbjct: 122 SDMETRVVTADQGEALA 138
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 57/118 (48%), Gaps = 8/118 (6%)
Query: 19 RVVMLGLDAAGKTTILYKLHIGEVL-STVPTIG--FNVEKVQYKN--VIFTVWDVGGQEK 73
+++++G GK+ +L + S + TIG F + + +N V +WD GQE+
Sbjct: 11 KLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIWDTAGQER 70
Query: 74 LRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSV-ILVFANKQDM 130
R + Y+ G+I V D DR+ KQ Q I D + + +V L+ NK D+
Sbjct: 71 FRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEI--DRYAMENVNKLLVGNKCDL 126
>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
Length = 169
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 60/128 (46%), Gaps = 8/128 (6%)
Query: 17 EMRVVMLGLDAAGKTTILYKLHIGEVLSTV-PTIG--FNVEKVQYKNVI--FTVWDVGGQ 71
E++V +LG GK++I+++ + PTIG F + VQY+N + F +WD GQ
Sbjct: 5 ELKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQ 64
Query: 72 EKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKD-PFMLNSVILVFANKQDM 130
E+ R L Y+ + I V D E K + + + P + V+ + NK D+
Sbjct: 65 ERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSI--VVAIAGNKCDL 122
Query: 131 KGAMTPME 138
ME
Sbjct: 123 TDVREVME 130
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
Length = 175
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 62/138 (44%), Gaps = 13/138 (9%)
Query: 19 RVVMLGLDAAGKTTILYKLHIGEVL-STVPTIG--FNVEKVQY--KNVIFTVWDVGGQEK 73
+++++G GK+ +L + S + TIG F + ++ K + +WD GQE+
Sbjct: 11 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 70
Query: 74 LRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSV-ILVFANKQDMKG 132
R + Y+ G+I V D D+E KQ Q I D + +V L+ NK D+
Sbjct: 71 FRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEI--DRYASENVNKLLVGNKSDLTT 128
Query: 133 A-----MTPMEVCEGLGL 145
T E + LG+
Sbjct: 129 KKVVDNTTAKEFADSLGI 146
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
Length = 181
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 62/138 (44%), Gaps = 13/138 (9%)
Query: 19 RVVMLGLDAAGKTTILYKLHIGEVL-STVPTIG--FNVEKVQY--KNVIFTVWDVGGQEK 73
+++++G GK+ +L + S + TIG F + ++ K + +WD GQE+
Sbjct: 11 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 70
Query: 74 LRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSV-ILVFANKQDMKG 132
R + Y+ G+I V D D+E KQ Q I D + +V L+ NK D+
Sbjct: 71 FRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEI--DRYASENVNKLLVGNKSDLTT 128
Query: 133 A-----MTPMEVCEGLGL 145
T E + LG+
Sbjct: 129 KKVVDNTTAKEFADSLGI 146
>pdb|1FQJ|A Chain A, Crystal Structure Of The Heterotrimeric Complex Of The Rgs
Domain Of Rgs9, The Gamma Subunit Of Phosphodiesterase
And The GtI1 CHIMERA ALPHA SUBUNIT [(RGS9)-(Pdegamma)-
(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQJ|D Chain D, Crystal Structure Of The Heterotrimeric Complex Of The Rgs
Domain Of Rgs9, The Gamma Subunit Of Phosphodiesterase
And The GtI1 CHIMERA ALPHA SUBUNIT [(RGS9)-(Pdegamma)-
(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQK|A Chain A, Crystal Structure Of The Heterodimeric Complex Of The Rgs
Domain Of Rgs9, And The GtI1 CHIMERA ALPHA SUBUNIT
[(Rgs9)-(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQK|C Chain C, Crystal Structure Of The Heterodimeric Complex Of The Rgs
Domain Of Rgs9, And The GtI1 CHIMERA ALPHA SUBUNIT
[(Rgs9)-(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
Length = 325
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 54/110 (49%), Gaps = 13/110 (11%)
Query: 44 STVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE----- 98
S V T G + +K++ F ++DVGGQ R W H F +I+ V D +
Sbjct: 148 SRVKTTGIIETQFSFKDLNFRMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 207
Query: 99 -----RIGKAKQEFQAIIKDPFMLNSVILVFANKQDM---KGAMTPMEVC 140
R+ ++ + F +I + + ++ I++F NK+D+ K +P+ +C
Sbjct: 208 DEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC 257
>pdb|3V00|C Chain C, Studies Of A Constitutively Active G-Alpha Subunit Provide
Insights Into The Mechanism Of G Protein Activation.
pdb|3V00|B Chain B, Studies Of A Constitutively Active G-Alpha Subunit Provide
Insights Into The Mechanism Of G Protein Activation.
pdb|3V00|A Chain A, Studies Of A Constitutively Active G-Alpha Subunit Provide
Insights Into The Mechanism Of G Protein Activation
Length = 356
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 53/110 (48%), Gaps = 13/110 (11%)
Query: 44 STVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE----- 98
S V T G + +K++ F ++DVGGQ R W H F +I+ V D +
Sbjct: 179 SRVKTTGIIETQFSFKDLNFRMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 238
Query: 99 -----RIGKAKQEFQAIIKDPFMLNSVILVFANKQDM---KGAMTPMEVC 140
R+ ++ F +I + + ++ I++F NK+D+ K +P+ +C
Sbjct: 239 DEEMNRMHESMHLFNSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC 288
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 62/138 (44%), Gaps = 13/138 (9%)
Query: 19 RVVMLGLDAAGKTTILYKLHIGEVL-STVPTIG--FNVEKVQY--KNVIFTVWDVGGQEK 73
+++++G GK+ +L + S + TIG F + ++ K + +WD GQE+
Sbjct: 1 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 60
Query: 74 LRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSV-ILVFANKQDMKG 132
R + Y+ G+I V D D+E KQ Q I D + +V L+ NK D+
Sbjct: 61 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI--DRYASENVNKLLVGNKCDLTT 118
Query: 133 A-----MTPMEVCEGLGL 145
T E + LG+
Sbjct: 119 KKVVDYTTAKEFADSLGI 136
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 62/139 (44%), Gaps = 13/139 (9%)
Query: 18 MRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIG--FNVEKVQY--KNVIFTVWDVGGQE 72
+++++G GK+ +L + S + TIG F + ++ K + +WD GQE
Sbjct: 34 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 93
Query: 73 KLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSV-ILVFANKQDMK 131
+ R + Y+ G+I V D D+E KQ Q I D + +V L+ NK D+
Sbjct: 94 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI--DRYASENVNKLLVGNKCDLT 151
Query: 132 GA-----MTPMEVCEGLGL 145
T E + LG+
Sbjct: 152 TKKVVDYTTAKEFADSLGI 170
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 62/138 (44%), Gaps = 13/138 (9%)
Query: 19 RVVMLGLDAAGKTTILYKLHIGEVL-STVPTIG--FNVEKVQY--KNVIFTVWDVGGQEK 73
+++++G GK+ +L + S + TIG F + ++ K + +WD GQE+
Sbjct: 8 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 67
Query: 74 LRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSV-ILVFANKQDMKG 132
R + Y+ G+I V D D+E KQ Q I D + +V L+ NK D+
Sbjct: 68 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI--DRYASENVNKLLVGNKCDLTT 125
Query: 133 A-----MTPMEVCEGLGL 145
T E + LG+
Sbjct: 126 KKVVDYTTAKEFADSLGI 143
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 64/135 (47%), Gaps = 7/135 (5%)
Query: 12 FFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTV-PTIGFNVEK----VQYKNVIFTVW 66
F ++V+ G A GK++ L +L E + T+G + + V + + +W
Sbjct: 23 FSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLW 82
Query: 67 DVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFAN 126
D GQE+ R + + YF DG++ + D + E+ +E+ +I+D I++ N
Sbjct: 83 DTAGQERFRSIAKSYFRKADGVLLLYD-VTCEKSFLNIREWVDMIEDAAHETVPIMLVGN 141
Query: 127 KQDMKG-AMTPMEVC 140
K D++ A T + C
Sbjct: 142 KADIRDTAATEGQKC 156
>pdb|1GOT|A Chain A, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
Length = 350
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 52/110 (47%), Gaps = 13/110 (11%)
Query: 44 STVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVV----------D 93
S V T G + +K++ F +DVGGQ R W H F +I+ V +
Sbjct: 173 SRVKTTGIIETQFSFKDLNFRXFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 232
Query: 94 SLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDM---KGAMTPMEVC 140
+ R ++ + F +I + + ++ I++F NK+D+ K +P+ +C
Sbjct: 233 DEEXNRXHESXKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC 282
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 62/138 (44%), Gaps = 13/138 (9%)
Query: 19 RVVMLGLDAAGKTTILYKLHIGEVL-STVPTIG--FNVEKVQY--KNVIFTVWDVGGQEK 73
+++++G GK+ +L + S + TIG F + ++ K + +WD GQE+
Sbjct: 8 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 67
Query: 74 LRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSV-ILVFANKQDMKG 132
R + Y+ G+I V D D+E KQ Q I D + +V L+ NK D+
Sbjct: 68 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI--DRYASENVNKLLVGNKCDLTT 125
Query: 133 A-----MTPMEVCEGLGL 145
T E + LG+
Sbjct: 126 KKVVDYTTAKEFADSLGI 143
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 62/138 (44%), Gaps = 13/138 (9%)
Query: 19 RVVMLGLDAAGKTTILYKLHIGEVL-STVPTIG--FNVEKVQY--KNVIFTVWDVGGQEK 73
+++++G GK+ +L + S + TIG F + ++ K + +WD GQE+
Sbjct: 27 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 86
Query: 74 LRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSV-ILVFANKQDMKG 132
R + Y+ G+I V D D+E KQ Q I D + +V L+ NK D+
Sbjct: 87 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI--DRYASENVNKLLVGNKCDLTT 144
Query: 133 A-----MTPMEVCEGLGL 145
T E + LG+
Sbjct: 145 KKVVDYTTAKEFADSLGI 162
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 59/135 (43%), Gaps = 6/135 (4%)
Query: 15 NSEMRVVMLGLDAAGKTTILYKL---HIGEVLSTVPTIGFNVEKVQY--KNVIFTVWDVG 69
+S M+++++G GK+ +L + T I F ++ V K V +WD
Sbjct: 1 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTA 60
Query: 70 GQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQD 129
GQE+ R + Y+ G+I V D D KQ F+ + + + +L+ NK D
Sbjct: 61 GQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKT-VNEHANDEAQLLLVGNKSD 119
Query: 130 MKGAMTPMEVCEGLG 144
M+ + + E L
Sbjct: 120 METRVVTADQGEALA 134
>pdb|3ONW|A Chain A, Structure Of A G-Alpha-I1 Mutant With Enhanced Affinity
For The Rgs14 Goloco Motif.
pdb|3ONW|B Chain B, Structure Of A G-Alpha-I1 Mutant With Enhanced Affinity
For The Rgs14 Goloco Motif
Length = 328
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 56/114 (49%), Gaps = 14/114 (12%)
Query: 41 EVLST-VPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE- 98
+VL T V T G +K++ F ++DVGGQ R W H F +I+ V D +
Sbjct: 147 DVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDL 206
Query: 99 ---------RIGKAKQEFQAIIKDPFMLNSVILVFANKQDM---KGAMTPMEVC 140
R+ ++ + F +I + + ++ I++F NK+D+ K +P+ +C
Sbjct: 207 VLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC 260
Score = 27.7 bits (60), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 32/52 (61%), Gaps = 7/52 (13%)
Query: 14 GNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKV-QYKNVIFT 64
G E+++++LG +GK+TI+ ++ I + G++ E+ QYK V+++
Sbjct: 4 GAREVKLLLLGAGESGKSTIVKQMKI------IHEAGYSEEECKQYKAVVYS 49
>pdb|3D7M|A Chain A, Crystal Structure Of The G Protein Fast-Exchange Double
Mutant I56cQ333C
Length = 354
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 56/114 (49%), Gaps = 14/114 (12%)
Query: 41 EVLST-VPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE- 98
+VL T V T G +K++ F ++DVGGQ R W H F +I+ V D +
Sbjct: 173 DVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDL 232
Query: 99 ---------RIGKAKQEFQAIIKDPFMLNSVILVFANKQDM---KGAMTPMEVC 140
R+ ++ + F +I + + ++ I++F NK+D+ K +P+ +C
Sbjct: 233 VLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC 286
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 62/138 (44%), Gaps = 13/138 (9%)
Query: 19 RVVMLGLDAAGKTTILYKLHIGEVL-STVPTIG--FNVEKVQY--KNVIFTVWDVGGQEK 73
+++++G GK+ +L + S + TIG F + ++ K + +WD GQE+
Sbjct: 18 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 77
Query: 74 LRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSV-ILVFANKQDMKG 132
R + Y+ G+I V D D+E KQ Q I D + +V L+ NK D+
Sbjct: 78 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI--DRYASENVNKLLVGNKCDLTT 135
Query: 133 A-----MTPMEVCEGLGL 145
T E + LG+
Sbjct: 136 KKVVDYTTAKEFADSLGI 153
>pdb|1KJY|A Chain A, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
pdb|1KJY|C Chain C, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
pdb|2OM2|A Chain A, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
pdb|2OM2|C Chain C, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
Length = 325
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 56/114 (49%), Gaps = 14/114 (12%)
Query: 41 EVLST-VPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE- 98
+VL T V T G +K++ F ++DVGGQ R W H F +I+ V D +
Sbjct: 144 DVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDL 203
Query: 99 ---------RIGKAKQEFQAIIKDPFMLNSVILVFANKQDM---KGAMTPMEVC 140
R+ ++ + F +I + + ++ I++F NK+D+ K +P+ +C
Sbjct: 204 VLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC 257
Score = 27.7 bits (60), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 32/52 (61%), Gaps = 7/52 (13%)
Query: 14 GNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKV-QYKNVIFT 64
G E+++++LG +GK+TI+ ++ I + G++ E+ QYK V+++
Sbjct: 1 GAREVKLLLLGAGESGKSTIVKQMKI------IHEAGYSEEECKQYKAVVYS 46
>pdb|1Y3A|A Chain A, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
pdb|1Y3A|B Chain B, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
pdb|1Y3A|C Chain C, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
pdb|1Y3A|D Chain D, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
Length = 329
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 56/114 (49%), Gaps = 14/114 (12%)
Query: 41 EVLST-VPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE- 98
+VL T V T G +K++ F ++DVGGQ R W H F +I+ V D +
Sbjct: 148 DVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDL 207
Query: 99 ---------RIGKAKQEFQAIIKDPFMLNSVILVFANKQDM---KGAMTPMEVC 140
R+ ++ + F +I + + ++ I++F NK+D+ K +P+ +C
Sbjct: 208 VLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC 261
>pdb|1GP2|A Chain A, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1AGR|A Chain A, Complex Of Alf4-Activated Gi-Alpha-1 With Rgs4
pdb|1AGR|D Chain D, Complex Of Alf4-Activated Gi-Alpha-1 With Rgs4
pdb|1CIP|A Chain A, Gi-Alpha-1 Subunit Of Guanine Nucleotide-Binding Protein
Complexed With A Gtp Analogue
pdb|1BOF|A Chain A, Gi-Alpha-1 Bound To Gdp And Magnesium
pdb|1GDD|A Chain A, Tertiary And Quaternary Structural Changes In Gia1 Induced
By Gtp Hydrolysis
pdb|1GFI|A Chain A, Structures Of Active Conformations Of Gi Alpha 1 And The
Mechanism Of Gtp Hydrolysis
pdb|1GIA|A Chain A, Structure Of Active Conformations Of Gia1 And The
Mechanism Of Gtp Hydrolysis
Length = 353
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 56/114 (49%), Gaps = 14/114 (12%)
Query: 41 EVLST-VPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE- 98
+VL T V T G +K++ F ++DVGGQ R W H F +I+ V D +
Sbjct: 172 DVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDL 231
Query: 99 ---------RIGKAKQEFQAIIKDPFMLNSVILVFANKQDM---KGAMTPMEVC 140
R+ ++ + F +I + + ++ I++F NK+D+ K +P+ +C
Sbjct: 232 VLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC 285
>pdb|4G5O|A Chain A, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
pdb|4G5O|B Chain B, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
pdb|4G5O|C Chain C, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
pdb|4G5O|D Chain D, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
Length = 330
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 55/114 (48%), Gaps = 14/114 (12%)
Query: 41 EVLST-VPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE- 98
+VL T V T G +K++ F ++DVGGQ R W H F +I+ V D +
Sbjct: 149 DVLRTRVKTTGIVETHFTFKDLYFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDL 208
Query: 99 ---------RIGKAKQEFQAIIKDPFMLNSVILVFANKQDM---KGAMTPMEVC 140
R+ ++ + F +I + + + I++F NK+D+ K +P+ +C
Sbjct: 209 VLAEDEEMNRMHESMKLFDSICNNKWFTETSIILFLNKKDLFEEKIKRSPLTIC 262
>pdb|2GTP|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs1 And Activated Gi Alpha 1
pdb|2GTP|B Chain B, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs1 And Activated Gi Alpha 1
Length = 323
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 56/114 (49%), Gaps = 14/114 (12%)
Query: 41 EVLST-VPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE- 98
+VL T V T G +K++ F ++DVGGQ R W H F +I+ V D +
Sbjct: 142 DVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDL 201
Query: 99 ---------RIGKAKQEFQAIIKDPFMLNSVILVFANKQDM---KGAMTPMEVC 140
R+ ++ + F +I + + ++ I++F NK+D+ K +P+ +C
Sbjct: 202 VLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC 255
>pdb|4G5Q|A Chain A, Structure Of Lgn Gl4GALPHAI1 COMPLEX
pdb|4G5Q|B Chain B, Structure Of Lgn Gl4GALPHAI1 COMPLEX
pdb|4G5Q|C Chain C, Structure Of Lgn Gl4GALPHAI1 COMPLEX
pdb|4G5Q|D Chain D, Structure Of Lgn Gl4GALPHAI1 COMPLEX
Length = 330
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 56/114 (49%), Gaps = 14/114 (12%)
Query: 41 EVLST-VPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE- 98
+VL T V T G +K++ F ++DVGGQ R W H F +I+ V D +
Sbjct: 149 DVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDL 208
Query: 99 ---------RIGKAKQEFQAIIKDPFMLNSVILVFANKQDM---KGAMTPMEVC 140
R+ ++ + F +I + + ++ I++F NK+D+ K +P+ +C
Sbjct: 209 VLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC 262
>pdb|3QI2|A Chain A, A Galpha P-Loop Mutation Prevents Transition To The
Activated State: G42r Bound To Rgs14 Goloco
pdb|3QI2|B Chain B, A Galpha P-Loop Mutation Prevents Transition To The
Activated State: G42r Bound To Rgs14 Goloco
Length = 328
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 56/114 (49%), Gaps = 14/114 (12%)
Query: 41 EVLST-VPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE- 98
+VL T V T G +K++ F ++DVGGQ R W H F +I+ V D +
Sbjct: 147 DVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDL 206
Query: 99 ---------RIGKAKQEFQAIIKDPFMLNSVILVFANKQDM---KGAMTPMEVC 140
R+ ++ + F +I + + ++ I++F NK+D+ K +P+ +C
Sbjct: 207 VLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC 260
Score = 28.1 bits (61), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 32/52 (61%), Gaps = 7/52 (13%)
Query: 14 GNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKV-QYKNVIFT 64
G E+++++LG +GK+TI+ ++ I + G++ E+ QYK V+++
Sbjct: 4 GAREVKLLLLGARESGKSTIVKQMKI------IHEAGYSEEECKQYKAVVYS 49
>pdb|2IHB|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs10 And Activated Gi Alpha 3
Length = 323
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 55/114 (48%), Gaps = 14/114 (12%)
Query: 41 EVLST-VPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE- 98
+VL T V T G +K++ F ++DVGGQ R W H F +I+ V D +
Sbjct: 142 DVLRTRVKTTGIVETHFTFKDLYFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDL 201
Query: 99 ---------RIGKAKQEFQAIIKDPFMLNSVILVFANKQDM---KGAMTPMEVC 140
R+ ++ + F +I + + + I++F NK+D+ K +P+ +C
Sbjct: 202 VLAEDEEMNRMHESMKLFDSICNNKWFTETSIILFLNKKDLFEEKIKRSPLTIC 255
>pdb|2IK8|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs16 And Activated Gi Alpha 1
pdb|2IK8|C Chain C, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs16 And Activated Gi Alpha 1
Length = 324
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 56/114 (49%), Gaps = 14/114 (12%)
Query: 41 EVLST-VPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE- 98
+VL T V T G +K++ F ++DVGGQ R W H F +I+ V D +
Sbjct: 143 DVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDL 202
Query: 99 ---------RIGKAKQEFQAIIKDPFMLNSVILVFANKQDM---KGAMTPMEVC 140
R+ ++ + F +I + + ++ I++F NK+D+ K +P+ +C
Sbjct: 203 VLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC 256
>pdb|2XNS|A Chain A, Crystal Structure Of Human G Alpha I1 Bound To A Designed
Helical Peptide Derived From The Goloco Motif Of Rgs14
pdb|2XNS|B Chain B, Crystal Structure Of Human G Alpha I1 Bound To A Designed
Helical Peptide Derived From The Goloco Motif Of Rgs14
Length = 327
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 56/114 (49%), Gaps = 14/114 (12%)
Query: 41 EVLST-VPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE- 98
+VL T V T G +K++ F ++DVGGQ R W H F +I+ V D +
Sbjct: 146 DVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDL 205
Query: 99 ---------RIGKAKQEFQAIIKDPFMLNSVILVFANKQDM---KGAMTPMEVC 140
R+ ++ + F +I + + ++ I++F NK+D+ K +P+ +C
Sbjct: 206 VLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC 259
>pdb|3FFA|A Chain A, Crystal Structure Of A Fast Activating G Protein Mutant
pdb|3FFB|A Chain A, Gi-Alpha-1 Mutant In Gdp Bound Form
Length = 360
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 56/114 (49%), Gaps = 14/114 (12%)
Query: 41 EVLST-VPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE- 98
+VL T V T G +K++ F ++DVGGQ R W H F +I+ V D +
Sbjct: 179 DVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDL 238
Query: 99 ---------RIGKAKQEFQAIIKDPFMLNSVILVFANKQDM---KGAMTPMEVC 140
R+ ++ + F +I + + ++ I++F NK+D+ K +P+ +C
Sbjct: 239 VLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC 292
>pdb|3QE0|A Chain A, A Galpha-I1 P-Loop Mutation Prevents Transition To The
Activated State
pdb|3QE0|B Chain B, A Galpha-I1 P-Loop Mutation Prevents Transition To The
Activated State
pdb|3QE0|C Chain C, A Galpha-I1 P-Loop Mutation Prevents Transition To The
Activated State
Length = 325
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 56/114 (49%), Gaps = 14/114 (12%)
Query: 41 EVLST-VPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE- 98
+VL T V T G +K++ F ++DVGGQ R W H F +I+ V D +
Sbjct: 144 DVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDL 203
Query: 99 ---------RIGKAKQEFQAIIKDPFMLNSVILVFANKQDM---KGAMTPMEVC 140
R+ ++ + F +I + + ++ I++F NK+D+ K +P+ +C
Sbjct: 204 VLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC 257
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 33/52 (63%), Gaps = 7/52 (13%)
Query: 14 GNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKV-QYKNVIFT 64
N+E+++++LG +GK+TI+ ++ I + G++ E+ QYK V+++
Sbjct: 1 SNAEVKLLLLGARESGKSTIVKQMKI------IHEAGYSEEECKQYKAVVYS 46
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 59/135 (43%), Gaps = 6/135 (4%)
Query: 15 NSEMRVVMLGLDAAGKTTILYKL---HIGEVLSTVPTIGFNVEKVQY--KNVIFTVWDVG 69
+S M+++++G GK+ +L + T I F ++ V K V +WD
Sbjct: 18 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTA 77
Query: 70 GQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQD 129
GQE+ R + Y+ G+I V D D KQ F+ + + + +L+ NK D
Sbjct: 78 GQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKT-VNEHANDEAQLLLVGNKSD 136
Query: 130 MKGAMTPMEVCEGLG 144
M+ + + E L
Sbjct: 137 METRVVTADQGEALA 151
>pdb|2G83|A Chain A, Structure Of Activated G-alpha-i1 Bound To A Nucleotide-
State-selective Peptide: Minimal Determinants For
Recognizing The Active Form Of A G Protein Alpha Subunit
pdb|2G83|B Chain B, Structure Of Activated G-alpha-i1 Bound To A Nucleotide-
State-selective Peptide: Minimal Determinants For
Recognizing The Active Form Of A G Protein Alpha Subunit
Length = 313
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 56/114 (49%), Gaps = 14/114 (12%)
Query: 41 EVLST-VPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE- 98
+VL T V T G +K++ F ++DVGGQ R W H F +I+ V D +
Sbjct: 141 DVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDL 200
Query: 99 ---------RIGKAKQEFQAIIKDPFMLNSVILVFANKQDM---KGAMTPMEVC 140
R+ ++ + F +I + + ++ I++F NK+D+ K +P+ +C
Sbjct: 201 VLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC 254
>pdb|4G5R|A Chain A, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5R|B Chain B, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5R|C Chain C, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5R|D Chain D, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5S|A Chain A, Structure Of Lgn Gl3GALPHAI3 COMPLEX
pdb|4G5S|B Chain B, Structure Of Lgn Gl3GALPHAI3 COMPLEX
pdb|4G5S|C Chain C, Structure Of Lgn Gl3GALPHAI3 COMPLEX
pdb|4G5S|D Chain D, Structure Of Lgn Gl3GALPHAI3 COMPLEX
Length = 330
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 55/114 (48%), Gaps = 14/114 (12%)
Query: 41 EVLST-VPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE- 98
+VL T V T G +K++ F ++DVGGQ R W H F +I+ V D +
Sbjct: 149 DVLRTRVKTTGIVETHFTFKDLYFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDL 208
Query: 99 ---------RIGKAKQEFQAIIKDPFMLNSVILVFANKQDM---KGAMTPMEVC 140
R+ ++ + F +I + + + I++F NK+D+ K +P+ +C
Sbjct: 209 VLAEDEEMNRMHESMKLFDSICNNKWFTETSIILFLNKKDLFEEKIKRSPLTIC 262
>pdb|1AS0|A Chain A, Gtp-Gamma-S Bound G42v Gia1
pdb|1AS2|A Chain A, Gdp+pi Bound G42v Gia1
pdb|1AS3|A Chain A, Gdp Bound G42v Gia1
Length = 353
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 56/114 (49%), Gaps = 14/114 (12%)
Query: 41 EVLST-VPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE- 98
+VL T V T G +K++ F ++DVGGQ R W H F +I+ V D +
Sbjct: 172 DVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDL 231
Query: 99 ---------RIGKAKQEFQAIIKDPFMLNSVILVFANKQDM---KGAMTPMEVC 140
R+ ++ + F +I + + ++ I++F NK+D+ K +P+ +C
Sbjct: 232 VLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC 285
>pdb|1SHZ|A Chain A, Crystal Structure Of The P115rhogef Rgrgs Domain In A
Complex With Galpha(13):galpha(i1) Chimera
pdb|1SHZ|D Chain D, Crystal Structure Of The P115rhogef Rgrgs Domain In A
Complex With Galpha(13):galpha(i1) Chimera
Length = 340
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 58/112 (51%), Gaps = 13/112 (11%)
Query: 42 VLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVV-----DSL- 95
+L+ PT G + +K++ F ++DVGGQ R W F +I+ V D +
Sbjct: 161 LLARRPTKGIHETHFTFKDLHFKMFDVGGQRSERKKWFECFEGVTAIIFCVALSDYDQVL 220
Query: 96 --DRE--RIGKAKQEFQAIIKDPFMLNSVILVFANKQDM---KGAMTPMEVC 140
DR+ R+ ++ + F +I + + ++ I++F NK+D+ K +P+ +C
Sbjct: 221 MEDRQTNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC 272
>pdb|1BH2|A Chain A, A326s Mutant Of An Inhibitory Alpha Subunit
Length = 315
Score = 47.0 bits (110), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 56/114 (49%), Gaps = 14/114 (12%)
Query: 41 EVLST-VPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE- 98
+VL T V T G +K++ F ++DVGGQ R W H F +I+ V D +
Sbjct: 142 DVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDL 201
Query: 99 ---------RIGKAKQEFQAIIKDPFMLNSVILVFANKQDM---KGAMTPMEVC 140
R+ ++ + F +I + + ++ I++F NK+D+ K +P+ +C
Sbjct: 202 VLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC 255
>pdb|2ZJY|A Chain A, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound
To Alf4 And Gdp
pdb|2ZJZ|A Chain A, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound
To Gdp
pdb|2ZJZ|B Chain B, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound
To Gdp
Length = 356
Score = 47.0 bits (110), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 56/114 (49%), Gaps = 14/114 (12%)
Query: 41 EVLST-VPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE- 98
+VL T V T G +K++ F ++DVGGQ R W H F +I+ V D +
Sbjct: 175 DVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDL 234
Query: 99 ---------RIGKAKQEFQAIIKDPFMLNSVILVFANKQDM---KGAMTPMEVC 140
R+ ++ + F +I + + ++ I++F NK+D+ K +P+ +C
Sbjct: 235 VLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC 288
>pdb|2ODE|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs8 And Activated Gi Alpha 3
pdb|2ODE|C Chain C, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs8 And Activated Gi Alpha 3
pdb|2V4Z|A Chain A, The Crystal Structure Of The Human G-Protein Subunit Alpha
( Gnai3) In Complex With An Engineered Regulator Of G-
Protein Signaling Type 2 Domain (Rgs2)
Length = 350
Score = 46.6 bits (109), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 55/114 (48%), Gaps = 14/114 (12%)
Query: 41 EVLST-VPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE- 98
+VL T V T G +K++ F ++DVGGQ R W H F +I+ V D +
Sbjct: 172 DVLRTRVKTTGIVETHFTFKDLYFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDL 231
Query: 99 ---------RIGKAKQEFQAIIKDPFMLNSVILVFANKQDM---KGAMTPMEVC 140
R+ ++ + F +I + + + I++F NK+D+ K +P+ +C
Sbjct: 232 VLAEDEEMNRMHESMKLFDSICNNKWFTETSIILFLNKKDLFEEKIKRSPLTIC 285
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 46.6 bits (109), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 61/138 (44%), Gaps = 13/138 (9%)
Query: 19 RVVMLGLDAAGKTTILYKLHIGEVL-STVPTIG--FNVEKVQY--KNVIFTVWDVGGQEK 73
+++++G GK +L + S + TIG F + ++ K + +WD GQE+
Sbjct: 18 KLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 77
Query: 74 LRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSV-ILVFANKQDMKG 132
R + Y+ G+I V D D+E KQ Q I D + +V L+ NK D+
Sbjct: 78 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI--DRYASENVNKLLVGNKCDLTT 135
Query: 133 A-----MTPMEVCEGLGL 145
T E + LG+
Sbjct: 136 KKVVDYTTAKEFADSLGI 153
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 58/119 (48%), Gaps = 6/119 (5%)
Query: 18 MRVVMLGLDAAGKTTILYKLHIGEVLST-VPTIGFNVE-KVQYKN---VIFTVWDVGGQE 72
+++++G + GKT+ L++ V T+G + + K Y+N + +WD GQE
Sbjct: 6 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQE 65
Query: 73 KLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMK 131
+ R + Y+ G I + D + E A Q++ IK N+ +L+ NK DM+
Sbjct: 66 RYRTITTAYYRGAMGFILMYDITNEESFN-AVQDWSTQIKTYSWDNAQVLLVGNKCDME 123
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 46/97 (47%), Gaps = 5/97 (5%)
Query: 19 RVVMLGLDAAGKTTILYKLHIGEVL-STVPTIG--FNVEKVQY--KNVIFTVWDVGGQEK 73
+++++G GK+ +L + S + TIG F + ++ K + +WD GQE+
Sbjct: 10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 69
Query: 74 LRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAI 110
R + Y+ G+I V D D+E KQ Q I
Sbjct: 70 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI 106
>pdb|4FMC|F Chain F, Espg-Rab1 Complex
Length = 117
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 55/117 (47%), Gaps = 8/117 (6%)
Query: 20 VVMLGLDAAGKTTILYKLHIGEVL-STVPTIG--FNVEKVQY--KNVIFTVWDVGGQEKL 74
++++G GK+ +L + S + TIG F + ++ K + +WD GQE+
Sbjct: 1 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 60
Query: 75 RPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSV-ILVFANKQDM 130
R + Y+ G+I V D D+E KQ Q I D + +V L+ NK D+
Sbjct: 61 RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI--DRYASENVNKLLVGNKCDL 115
>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
Length = 181
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 59/122 (48%), Gaps = 13/122 (10%)
Query: 19 RVVMLGLDAAGKTTILYKLHIGEV-LSTVPTIG--FNVEKVQYKN---VIFTVWDVGGQE 72
++V++G GK+ +L + E L + TIG F + +Q KN + +WD GQE
Sbjct: 9 KIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQIWDTAGQE 68
Query: 73 KLRPLWRHYFNNTDGLIYVVDSLDR---ERIGKAKQEFQAIIKDPFMLNSVILVFANKQD 129
+ R + Y+ G + V D + E I K +E ++D N VIL+ NK D
Sbjct: 69 RYRAITSAYYRGAVGALLVYDITKKNSFENIEKWLKE----LRDNADSNIVILLVGNKSD 124
Query: 130 MK 131
+K
Sbjct: 125 LK 126
>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With
The Minimal Rab Binding Domain Of Rabenosyn-5
Length = 170
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 59/128 (46%), Gaps = 8/128 (6%)
Query: 17 EMRVVMLGLDAAGKTTILYKLHIGEVLSTV-PTIG--FNVEKVQYKNVI--FTVWDVGGQ 71
E++V +LG GK++I+++ + PTIG F + VQY+N + F +WD G
Sbjct: 6 ELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGL 65
Query: 72 EKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKD-PFMLNSVILVFANKQDM 130
E+ R L Y+ + I V D E K + + + P + V+ + NK D+
Sbjct: 66 ERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSI--VVAIAGNKCDL 123
Query: 131 KGAMTPME 138
ME
Sbjct: 124 TDVREVME 131
>pdb|1ZCB|A Chain A, Crystal Structure Of G Alpha 13 In Complex With Gdp
pdb|3AB3|A Chain A, Crystal Structure Of P115rhogef Rgs Domain In Complex With
G Alpha 13
pdb|3AB3|C Chain C, Crystal Structure Of P115rhogef Rgs Domain In Complex With
G Alpha 13
Length = 362
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 50/99 (50%), Gaps = 10/99 (10%)
Query: 42 VLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL------ 95
+L+ PT G + + KNV F + DVGGQ R W F++ ++++V S
Sbjct: 182 LLARRPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVL 241
Query: 96 --DRE--RIGKAKQEFQAIIKDPFMLNSVILVFANKQDM 130
DR+ R+ ++ F+ I+ + N I++F NK D+
Sbjct: 242 MEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDL 280
>pdb|3UMS|A Chain A, Crystal Structure Of The G202a Mutant Of Human G-Alpha-I1
Length = 354
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 55/114 (48%), Gaps = 14/114 (12%)
Query: 41 EVLST-VPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE- 98
+VL T V T G +K++ F ++DV GQ R W H F +I+ V D +
Sbjct: 173 DVLRTRVKTTGIVETHFTFKDLHFKMFDVAGQRSERKKWIHCFEGVTAIIFCVALSDYDL 232
Query: 99 ---------RIGKAKQEFQAIIKDPFMLNSVILVFANKQDM---KGAMTPMEVC 140
R+ ++ + F +I + + ++ I++F NK+D+ K +P+ +C
Sbjct: 233 VLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC 286
>pdb|1GG2|A Chain A, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GIT|A Chain A, Structure Of Gtp-Binding Protein
Length = 353
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 55/114 (48%), Gaps = 14/114 (12%)
Query: 41 EVLST-VPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE- 98
+VL T V T G +K++ F ++DVG Q R W H F +I+ V D +
Sbjct: 172 DVLRTRVKTTGIVETHFTFKDLHFKMFDVGAQRSERKKWIHCFEGVTAIIFCVALSDYDL 231
Query: 99 ---------RIGKAKQEFQAIIKDPFMLNSVILVFANKQDM---KGAMTPMEVC 140
R+ ++ + F +I + + ++ I++F NK+D+ K +P+ +C
Sbjct: 232 VLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC 285
>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 69/151 (45%), Gaps = 16/151 (10%)
Query: 5 FRKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLST-VPTIG--FNVEKV--QYK 59
F+ FD F +++++G + GKT+ L++ V T+G F V+ V K
Sbjct: 16 FQGNFDYMF-----KLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEK 70
Query: 60 NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNS 119
V +WD GQE+ R + Y+ G I + D + E A Q++ IK N+
Sbjct: 71 RVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFN-AVQDWATQIKTYSWDNA 129
Query: 120 VILVFANKQDMKGA-MTPME----VCEGLGL 145
+++ NK DM+ + P E + E LG
Sbjct: 130 QVILVGNKCDMEEERVVPTEKGQLLAEQLGF 160
>pdb|3CX7|A Chain A, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex
With Galpha-13 Bound To Gdp-Alf4
pdb|3CX8|A Chain A, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex
With Galpha-13 Bound To Gtp-Gamma-S
Length = 338
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 50/99 (50%), Gaps = 10/99 (10%)
Query: 42 VLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL------ 95
+L+ PT G + + KNV F + DVGGQ R W F++ ++++V S
Sbjct: 158 LLARRPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVL 217
Query: 96 --DRE--RIGKAKQEFQAIIKDPFMLNSVILVFANKQDM 130
DR+ R+ ++ F+ I+ + N I++F NK D+
Sbjct: 218 MEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDL 256
>pdb|3UMR|A Chain A, Crystal Structure Of The G202d Mutant Of Human G-Alpha-I1
Length = 354
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 54/114 (47%), Gaps = 14/114 (12%)
Query: 41 EVLST-VPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE- 98
+VL T V T G +K++ F ++DV GQ R W H F +I+ V D +
Sbjct: 173 DVLRTRVKTTGIVETHFTFKDLHFKMFDVDGQRSERKKWIHCFEGVTAIIFCVALSDYDL 232
Query: 99 ---------RIGKAKQEFQAIIKDPFMLNSVILVFANKQDM---KGAMTPMEVC 140
R+ ++ + F +I + ++ I++F NK+D+ K +P+ +C
Sbjct: 233 VLAEDEEMNRMHESMKLFDSICNNKCFTDTSIILFLNKKDLFEEKIKKSPLTIC 286
>pdb|1GIL|A Chain A, Structure Of Active Conformations Of Gia1 And The
Mechanism Of Gtp Hydrolysis
Length = 353
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 55/114 (48%), Gaps = 14/114 (12%)
Query: 41 EVLST-VPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE- 98
+VL T V T G +K++ F ++DVGG R W H F +I+ V D +
Sbjct: 172 DVLRTRVKTTGIVETHFTFKDLHFKMFDVGGLRSERKKWIHCFEGVTAIIFCVALSDYDL 231
Query: 99 ---------RIGKAKQEFQAIIKDPFMLNSVILVFANKQDM---KGAMTPMEVC 140
R+ ++ + F +I + + ++ I++F NK+D+ K +P+ +C
Sbjct: 232 VLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC 285
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 43.5 bits (101), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 57/135 (42%), Gaps = 6/135 (4%)
Query: 15 NSEMRVVMLGLDAAGKTTILYKL---HIGEVLSTVPTIGFNVEKVQY--KNVIFTVWDVG 69
+S +++++G GK+ +L + T I F ++ V K V +WD
Sbjct: 1 DSIXKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTA 60
Query: 70 GQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQD 129
GQE+ R + Y+ G+I V D D KQ F+ + + + +L+ NK D
Sbjct: 61 GQERFRTITTAYYRGAXGIILVYDITDERTFTNIKQWFKT-VNEHANDEAQLLLVGNKSD 119
Query: 130 MKGAMTPMEVCEGLG 144
+ + + E L
Sbjct: 120 XETRVVTADQGEALA 134
>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To
Ehrho1-Gtpgammas
Length = 188
Score = 43.5 bits (101), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 7/71 (9%)
Query: 14 GNSEMRVVMLGLDAAGKTTILYKLHIGEVLST-VPTIGFNVEKV-QYKN--VIFTVWDVG 69
G +++V++G A GKT +L GE+ + VPT+ N V +YKN I +WD
Sbjct: 19 GKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTA 78
Query: 70 GQE---KLRPL 77
GQE +LRPL
Sbjct: 79 GQEEYDRLRPL 89
>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REF|A Chain A, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REG|A Chain A, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
pdb|3REG|B Chain B, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
Length = 194
Score = 43.5 bits (101), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 7/71 (9%)
Query: 14 GNSEMRVVMLGLDAAGKTTILYKLHIGEVLST-VPTIGFNVEKV-QYKN--VIFTVWDVG 69
G +++V++G A GKT +L GE+ + VPT+ N V +YKN I +WD
Sbjct: 20 GKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTA 79
Query: 70 GQE---KLRPL 77
GQE +LRPL
Sbjct: 80 GQEEYDRLRPL 90
>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
Length = 184
Score = 43.5 bits (101), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 61/134 (45%), Gaps = 17/134 (12%)
Query: 6 RKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEV-LSTVPTIG--FNVEKVQY--KN 60
R +D F +VV++G GK+ +L + E L + TIG F +Q K
Sbjct: 14 RGSYDYLF-----KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKT 68
Query: 61 VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVD---SLDRERIGKAKQEFQAIIKDPFML 117
+ +WD GQE+ R + Y+ G + V D L E + + +E ++D
Sbjct: 69 IKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKE----LRDHADS 124
Query: 118 NSVILVFANKQDMK 131
N VI++ NK D++
Sbjct: 125 NIVIMLVGNKSDLR 138
>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
pdb|1YZT|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
Length = 184
Score = 43.1 bits (100), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 57/122 (46%), Gaps = 14/122 (11%)
Query: 19 RVVMLGLDAAGKTTILYKL--------HIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGG 70
+VV+LG GKT+++ + HI + ++ T N+ K V +WD G
Sbjct: 22 KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGG---KRVNLAIWDTAG 78
Query: 71 QEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVIL-VFANKQD 129
QE+ L Y+ +++G I V D D + K K + + K + N + L + NK D
Sbjct: 79 QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRK--MLGNEICLCIVGNKID 136
Query: 130 MK 131
++
Sbjct: 137 LE 138
>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
Length = 191
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 57/121 (47%), Gaps = 12/121 (9%)
Query: 19 RVVMLGLDAAGKTTILYKLHIGEV-LSTVPTIG--FNVEKVQY--KNVIFTVWDVGGQEK 73
+VV++G GK+ +L + E L + TIG F +Q K + +WD GQE+
Sbjct: 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQER 90
Query: 74 LRPLWRHYFNNTDGLIYVVD---SLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDM 130
R + Y+ G + V D L E + + +E ++D N VI++ NK D+
Sbjct: 91 YRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKE----LRDHADSNIVIMLVGNKSDL 146
Query: 131 K 131
+
Sbjct: 147 R 147
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 57/135 (42%), Gaps = 6/135 (4%)
Query: 15 NSEMRVVMLGLDAAGKTTILYKL---HIGEVLSTVPTIGFNVEKVQY--KNVIFTVWDVG 69
+S +++++G GK+ +L + T I F ++ V K V +WD
Sbjct: 1 DSIXKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTA 60
Query: 70 GQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQD 129
GQE+ R + Y+ G+I V D D KQ F+ + + + +L+ NK D
Sbjct: 61 GQERFRTITTAYYRGAXGIILVYDVTDERTFTNIKQWFKT-VNEHANDEAQLLLVGNKSD 119
Query: 130 MKGAMTPMEVCEGLG 144
+ + + E L
Sbjct: 120 XETRVVTADQGEALA 134
>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1YZU|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1Z0I|A Chain A, Gdp-Bound Rab21 Gtpase
pdb|2OT3|B Chain B, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 170
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 57/122 (46%), Gaps = 14/122 (11%)
Query: 19 RVVMLGLDAAGKTTILYKL--------HIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGG 70
+VV+LG GKT+++ + HI + ++ T N+ K V +WD G
Sbjct: 8 KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGG---KRVNLAIWDTAG 64
Query: 71 QEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVIL-VFANKQD 129
QE+ L Y+ +++G I V D D + K K + + K + N + L + NK D
Sbjct: 65 QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRK--MLGNEICLCIVGNKID 122
Query: 130 MK 131
++
Sbjct: 123 LE 124
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 56/122 (45%), Gaps = 12/122 (9%)
Query: 19 RVVMLGLDAAGKTTILYKLHIGEVLSTVP-TIGFN----VEKVQYKNVIFTVWDVGGQEK 73
+ +++G GK+ +L++ + ++ P TIG + +V + + +WD GQE+
Sbjct: 17 KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQER 76
Query: 74 LRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFML---NSVILVFANKQDM 130
R + R Y+ G + V D R + + D L N+VI++ NK D+
Sbjct: 77 FRAVTRSYYRGAAGALMVYDITRR----STYNHLSSWLTDARNLTNPNTVIILIGNKADL 132
Query: 131 KG 132
+
Sbjct: 133 EA 134
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 54/117 (46%), Gaps = 6/117 (5%)
Query: 19 RVVMLGLDAAGKTTILYKLHIG---EVLSTVPTIGFNVE--KVQYKNVIFTVWDVGGQEK 73
++V++G + GKT ++ + G E + + F ++ ++Q K V +WD GQE+
Sbjct: 31 KLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQER 90
Query: 74 LRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDM 130
R + + Y+ + +G I D R + + K N V L+ NK D+
Sbjct: 91 FRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGS-NIVQLLIGNKSDL 146
>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
Length = 170
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 57/122 (46%), Gaps = 14/122 (11%)
Query: 19 RVVMLGLDAAGKTTILYKL--------HIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGG 70
+VV+LG GKT+++ + HI + ++ T N+ K V +WD G
Sbjct: 8 KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGG---KRVNLAIWDTAG 64
Query: 71 QEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVIL-VFANKQD 129
QE+ L Y+ +++G I V D D + K K + + K + N + L + NK D
Sbjct: 65 QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRK--MLGNEICLCIVGNKID 122
Query: 130 MK 131
++
Sbjct: 123 LE 124
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 61/126 (48%), Gaps = 7/126 (5%)
Query: 19 RVVMLGLDAAGKTTILYKLHIGEVLST-VPTIG--FNVEKV--QYKNVIFTVWDVGGQEK 73
+++++G + GKT+ L++ V T+G F V+ V K + +WD GQE+
Sbjct: 24 KLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQER 83
Query: 74 LRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA 133
R + Y+ G + + D ++E A Q++ IK N+ +++ NK D++
Sbjct: 84 YRTITTAYYRGAMGFLLMYDIANQESFA-AVQDWATQIKTYSWDNAQVILVGNKCDLEDE 142
Query: 134 -MTPME 138
+ P E
Sbjct: 143 RVVPAE 148
>pdb|1TND|A Chain A, The 2.2 Angstroms Crystal Structure Of Transducin-Alpha
Complexed With Gtp Gamma S
pdb|1TND|B Chain B, The 2.2 Angstroms Crystal Structure Of Transducin-Alpha
Complexed With Gtp Gamma S
pdb|1TND|C Chain C, The 2.2 Angstroms Crystal Structure Of Transducin-Alpha
Complexed With Gtp Gamma S
pdb|1TAD|A Chain A, Gtpase Mechanism Of Gproteins From The 1.7-Angstrom
Crystal Structure Of Transducin Alpha-Gdp-Alf4-
pdb|1TAD|B Chain B, Gtpase Mechanism Of Gproteins From The 1.7-Angstrom
Crystal Structure Of Transducin Alpha-Gdp-Alf4-
pdb|1TAD|C Chain C, Gtpase Mechanism Of Gproteins From The 1.7-Angstrom
Crystal Structure Of Transducin Alpha-Gdp-Alf4-
pdb|1TAG|A Chain A, Structural Determinants For Activation Of The
Alpha-Subunit Of A Heterotrimeric G Protein
Length = 324
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 46/97 (47%), Gaps = 10/97 (10%)
Query: 44 STVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYV----------VD 93
S V T G + +K++ F ++DVGGQ R W H F +I++ V+
Sbjct: 147 SRVKTTGIIETQFSFKDLNFRMFDVGGQRSERKKWIHCFEGVTCIIFIAALSAYDMVLVE 206
Query: 94 SLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDM 130
+ R+ ++ F +I + + I++F NK+D+
Sbjct: 207 DDEVNRMHESLHLFNSICNHRYFATTSIVLFLNKKDV 243
>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|B Chain B, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|C Chain C, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|D Chain D, Crystal Structure Of Rab5-Gdp Complex
Length = 171
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 55/119 (46%), Gaps = 6/119 (5%)
Query: 17 EMRVVMLGLDAAGKTTILYKLHIGEVLS-TVPTIG--FNVEKVQYKN--VIFTVWDVGGQ 71
+ ++V+LG A GK++++ + G+ TIG F + V + V F +WD GQ
Sbjct: 7 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ 66
Query: 72 EKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDM 130
E+ L Y+ I V D + E +AK + + + N VI + NK D+
Sbjct: 67 ERYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWVKELQRQA-SPNIVIALSGNKADL 124
>pdb|3CX6|A Chain A, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex
With Galpha-13 Bound To Gdp
Length = 338
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 49/99 (49%), Gaps = 10/99 (10%)
Query: 42 VLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL------ 95
+L+ PT G + + KNV F + DVGG R W F++ ++++V S
Sbjct: 158 LLARRPTKGIHEYDFEIKNVPFKMVDVGGLRSERKRWFECFDSVTSILFLVSSSEFDQVL 217
Query: 96 --DRE--RIGKAKQEFQAIIKDPFMLNSVILVFANKQDM 130
DR+ R+ ++ F+ I+ + N I++F NK D+
Sbjct: 218 MEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDL 256
>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a
pdb|1R2Q|A Chain A, Crystal Structure Of Human Rab5a Gtpase Domain At 1.05 A
Resolution
Length = 170
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 55/119 (46%), Gaps = 6/119 (5%)
Query: 17 EMRVVMLGLDAAGKTTILYKLHIGEVLS-TVPTIG--FNVEKVQYKN--VIFTVWDVGGQ 71
+ ++V+LG A GK++++ + G+ TIG F + V + V F +WD GQ
Sbjct: 6 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ 65
Query: 72 EKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDM 130
E+ L Y+ I V D + E +AK + + + N VI + NK D+
Sbjct: 66 ERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQA-SPNIVIALSGNKADL 123
>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
Length = 199
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 61/132 (46%), Gaps = 17/132 (12%)
Query: 8 LFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEV-LSTVPTIG--FNVEKVQY--KNVI 62
++D F +VV++G GK+ +L + E L + TIG F +Q K +
Sbjct: 1 MYDYLF-----KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIK 55
Query: 63 FTVWDVGGQEKLRPLWRHYFNNTDGLIYVVD---SLDRERIGKAKQEFQAIIKDPFMLNS 119
+WD GQE+ R + Y+ G + V D L E + + +E ++D N
Sbjct: 56 AQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKE----LRDHADSNI 111
Query: 120 VILVFANKQDMK 131
VI++ NK D++
Sbjct: 112 VIMLVGNKSDLR 123
>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|B Chain B, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|C Chain C, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|D Chain D, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|E Chain E, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
Length = 171
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 55/119 (46%), Gaps = 6/119 (5%)
Query: 17 EMRVVMLGLDAAGKTTILYKLHIGEVLS-TVPTIG--FNVEKVQYKN--VIFTVWDVGGQ 71
+ ++V+LG A GK++++ + G+ TIG F + V + V F +WD GQ
Sbjct: 7 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ 66
Query: 72 EKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDM 130
E+ L Y+ I V D + E +AK + + + N VI + NK D+
Sbjct: 67 ERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQA-SPNIVIALSGNKADL 124
>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 10/92 (10%)
Query: 7 KLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLST-VPTIG--FNVEKVQY--KNV 61
K +D F +++++G GKT +L++ ST + TIG F + ++ K +
Sbjct: 3 KTYDYLF-----KLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRI 57
Query: 62 IFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVD 93
+WD GQE+ R + Y+ G++ V D
Sbjct: 58 KLQIWDTAGQERFRTITTAYYRGAMGIMLVYD 89
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 43/87 (49%), Gaps = 5/87 (5%)
Query: 17 EMRVVMLGLDAAGKTTILYKLH---IGEVLSTVPTIGFNVEKVQY--KNVIFTVWDVGGQ 71
+++V+++G GKT+++ + E + + F ++ V+ K + +WD GQ
Sbjct: 26 KLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQ 85
Query: 72 EKLRPLWRHYFNNTDGLIYVVDSLDRE 98
E+ + Y+ + G+I V D +E
Sbjct: 86 ERFNSITSAYYRSAKGIILVYDITKKE 112
>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 5/95 (5%)
Query: 16 SEMRVVMLGLDAAGKTTILYKLHIGEVLST-VPTIG--FNVEKV--QYKNVIFTVWDVGG 70
+ +++V+LG A GK++I+ + + PTIG F ++V V F +WD G
Sbjct: 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAG 61
Query: 71 QEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQ 105
QE+ L Y+ N + V D + KA+
Sbjct: 62 QERFASLAPXYYRNAQAALVVYDVTKPQSFIKARH 96
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 7/84 (8%)
Query: 50 GFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQA 109
G V V K V +WD GQE+ R + R Y+ G + V D RE A
Sbjct: 63 GSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRE----TYNSLAA 118
Query: 110 IIKDPFML---NSVILVFANKQDM 130
+ D L N V+++ NK+D+
Sbjct: 119 WLTDARTLASPNIVVILCGNKKDL 142
>pdb|1AZS|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase
pdb|1AZT|A Chain A, Gs-Alpha Complexed With Gtp-Gamma-S
pdb|1AZT|B Chain B, Gs-Alpha Complexed With Gtp-Gamma-S
pdb|3C14|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Ca
pdb|3C15|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Mg
pdb|3C16|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Adenosine-5'-Triphosphate And Ca
Length = 402
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 47/95 (49%), Gaps = 10/95 (10%)
Query: 46 VPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD-----RE-- 98
V T G K Q V F ++DVGGQ R W FN+ +I+VV S RE
Sbjct: 202 VLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDN 261
Query: 99 ---RIGKAKQEFQAIIKDPFMLNSVILVFANKQDM 130
R+ +A F++I + ++ +++F NKQD+
Sbjct: 262 QTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDL 296
>pdb|1CUL|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2',5'-Dideoxy-Adenosine 3'- Triphosphate And Mg
Length = 380
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 47/95 (49%), Gaps = 10/95 (10%)
Query: 46 VPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD-----RE-- 98
V T G K Q V F ++DVGGQ R W FN+ +I+VV S RE
Sbjct: 188 VLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDN 247
Query: 99 ---RIGKAKQEFQAIIKDPFMLNSVILVFANKQDM 130
R+ +A F++I + ++ +++F NKQD+
Sbjct: 248 QTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDL 282
>pdb|3SN6|A Chain A, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 380
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 47/95 (49%), Gaps = 10/95 (10%)
Query: 46 VPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD-----RE-- 98
V T G K Q V F ++DVGGQ R W FN+ +I+VV S RE
Sbjct: 188 VLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDN 247
Query: 99 ---RIGKAKQEFQAIIKDPFMLNSVILVFANKQDM 130
R+ +A F++I + ++ +++F NKQD+
Sbjct: 248 QTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDL 282
>pdb|1CS4|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2'-Deoxy-Adenosine 3'- Monophosphate, Pyrophosphate And
Mg
pdb|1U0H|C Chain C, Structural Basis For The Inhibition Of Mammalian Adenylyl
Cyclase By Mant-gtp
pdb|2GVD|C Chain C, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With Tnp-Atp And Mn
pdb|2GVZ|C Chain C, Crystal Structure Of Complex Of Gs- With The Catalytic
Domains Of Mammalian Adenylyl Cyclase: Complex With
Mant- Atp And Mn
pdb|3G82|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Mant-Itp And Mn
pdb|3MAA|C Chain C, Complex Of Gs-alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5-o-(l-thiophosphate) And Low Ca Concentration
Length = 394
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 47/95 (49%), Gaps = 10/95 (10%)
Query: 46 VPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD-----RE-- 98
V T G K Q V F ++DVGGQ R W FN+ +I+VV S RE
Sbjct: 202 VLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDN 261
Query: 99 ---RIGKAKQEFQAIIKDPFMLNSVILVFANKQDM 130
R+ +A F++I + ++ +++F NKQD+
Sbjct: 262 QTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDL 296
>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
Length = 179
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 5/93 (5%)
Query: 17 EMRVVMLGLDAAGKTTILYKLHIGEVLS-TVPTIG--FNVEKVQYKN--VIFTVWDVGGQ 71
+ ++V+LG A GK++++ + G+ TIG F + V + V F +WD GQ
Sbjct: 8 QFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQ 67
Query: 72 EKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAK 104
E+ L Y+ I V D ++E +AK
Sbjct: 68 ERYHSLAPMYYRGAQAAIVVYDITNQETFARAK 100
>pdb|1CJK|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5'-(Alpha Thio)-Triphosphate (Rp), Mg, And Mn
pdb|1CJT|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mn, And Mg
pdb|1CJU|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp And Mg
pdb|1CJV|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mg, And Zn
pdb|1TL7|C Chain C, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With 2'(3')-O-(N-
Methylanthraniloyl)-Guanosine 5'-Triphosphate And Mn
Length = 402
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 47/95 (49%), Gaps = 10/95 (10%)
Query: 46 VPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD-----RE-- 98
V T G K Q V F ++DVGGQ R W FN+ +I+VV S RE
Sbjct: 202 VLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDN 261
Query: 99 ---RIGKAKQEFQAIIKDPFMLNSVILVFANKQDM 130
R+ +A F++I + ++ +++F NKQD+
Sbjct: 262 QTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDL 296
>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
Query: 19 RVVMLGLDAAGKTTILYKLHIGEVLST-VPTIG--FNVEKVQY--KNVIFTVWDVGGQEK 73
+++++G GKT +L++ ST + TIG F + ++ K + +WD GQE+
Sbjct: 8 KLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQER 67
Query: 74 LRPLWRHYFNNTDGLIYVVD 93
R + Y+ G++ V D
Sbjct: 68 FRTITTAYYRGAMGIMLVYD 87
>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33
Gtpase Bound To Gdp And Alf3
Length = 198
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/123 (21%), Positives = 56/123 (45%), Gaps = 8/123 (6%)
Query: 19 RVVMLGLDAAGKTTILYKLHIGEVLS-TVPTIGFNVEK----VQYKNVIFTVWDVGGQEK 73
+++++G GKT + Y+ G T TIG + + + + + +WD GQE+
Sbjct: 31 KIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQER 90
Query: 74 LR-PLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVI-LVFANKQDMK 131
R + +HY+ N +++V D + + K + N + ++ NK D++
Sbjct: 91 FRKSMVQHYYRNVHAVVFVYDXTNXASFHSLPAWIEE-CKQHLLANDIPRILVGNKCDLR 149
Query: 132 GAM 134
A+
Sbjct: 150 SAI 152
>pdb|2XTZ|A Chain A, Crystal Structure Of The G Alpha Protein Atgpa1 From
Arabidopsis Thaliana
pdb|2XTZ|B Chain B, Crystal Structure Of The G Alpha Protein Atgpa1 From
Arabidopsis Thaliana
pdb|2XTZ|C Chain C, Crystal Structure Of The G Alpha Protein Atgpa1 From
Arabidopsis Thaliana
Length = 354
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 13/93 (13%)
Query: 62 IFTVWDVGGQEKLRPLWRHYFNNTDGLIYVV----------DSLDRERIGKAKQEFQAII 111
++ ++DVGGQ R W H F +I+ + + R+ + K+ F ++
Sbjct: 184 VYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVL 243
Query: 112 KDPFMLNSVILVFANKQDM---KGAMTPMEVCE 141
K P + ++F NK D+ K P+ VCE
Sbjct: 244 KQPCFEKTSFMLFLNKFDIFEKKVLDVPLNVCE 276
>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase
Length = 189
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 19 RVVMLGLDAAGKTTILYKLHIGEVLS-TVPTIGFNVEK----VQYKNVIFTVWDVGGQEK 73
+++++G GKT + Y+ G T TIG + + + + + +WD GQE+
Sbjct: 22 KIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQER 81
Query: 74 LR-PLWRHYFNNTDGLIYVVD 93
R + +HY+ N +++V D
Sbjct: 82 FRKSMVQHYYRNVHAVVFVYD 102
>pdb|4FID|A Chain A, Crystal Structure Of A Heterotrimeric G-Protein Subunit
From Entamoeba Histolytica, Ehg-Alpha-1
pdb|4FID|B Chain B, Crystal Structure Of A Heterotrimeric G-Protein Subunit
From Entamoeba Histolytica, Ehg-Alpha-1
Length = 340
Score = 40.0 bits (92), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 10/82 (12%)
Query: 59 KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVV----------DSLDRERIGKAKQEFQ 108
K++ F + DVGGQ R W +F++ D I+V + + R+ ++ F+
Sbjct: 159 KDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDXKLYEDGNTSRLTESIAVFK 218
Query: 109 AIIKDPFMLNSVILVFANKQDM 130
I + F+ +V L+F NK D+
Sbjct: 219 DIXTNEFLKGAVKLIFLNKXDL 240
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 40.0 bits (92), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 51/128 (39%), Gaps = 15/128 (11%)
Query: 18 MRVVMLGLDAAGKTTILYKL---HIGEVLSTVPTIGFNVEKVQYK------------NVI 62
++++ LG GKTT LY+ T I F ++V Y V
Sbjct: 26 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVH 85
Query: 63 FTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVIL 122
+WD GQE+ R L +F + G + + D ++ + + + + N I+
Sbjct: 86 LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV 145
Query: 123 VFANKQDM 130
+ NK D+
Sbjct: 146 LIGNKADL 153
>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase
Length = 166
Score = 40.0 bits (92), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 53/119 (44%), Gaps = 6/119 (5%)
Query: 17 EMRVVMLGLDAAGKTTILYKLHIG---EVLSTVPTIGFNVEKVQYKN--VIFTVWDVGGQ 71
+ ++V+LG A GK++++ + G E + F + V + V F +WD GQ
Sbjct: 5 QFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDTAGQ 64
Query: 72 EKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDM 130
E+ L Y+ I V D + + +AK + + + N VI + NK D+
Sbjct: 65 ERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQA-SPNIVIALAGNKADL 122
>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
pdb|4DJT|B Chain B, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
Length = 218
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 57/122 (46%), Gaps = 13/122 (10%)
Query: 19 RVVMLGLDAAGKTTILYKLHIGEVLSTV-PTIGFNVEKVQY----KNVI-FTVWDVGGQE 72
++ ++G GKTT + ++ G T+G V + NVI F VWD GQE
Sbjct: 13 KICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQE 72
Query: 73 KLRPLWRHYFNNTDGLIYVVDSLDR---ERIGKAKQEFQAIIKDPFMLNSVILVFANKQD 129
K L Y+ G I D R + + + +EFQA++ + + I+V ANK D
Sbjct: 73 KKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGN----EAPIVVCANKID 128
Query: 130 MK 131
+K
Sbjct: 129 IK 130
>pdb|2FH5|B Chain B, The Structure Of The Mammalian Srp Receptor
pdb|2GO5|2 Chain 2, Structure Of Signal Recognition Particle Receptor (Sr) In
Complex With Signal Recognition Particle (Srp) And
Ribosome Nascent Chain Complex
Length = 214
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 63/128 (49%), Gaps = 7/128 (5%)
Query: 15 NSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKN---VIFTVWDVGGQ 71
+S+ V+ +GL +GKT + +L G+ T +I + + N T+ D+ G
Sbjct: 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGH 64
Query: 72 EKLR-PLWRHYFNNTDGLIYVVDSLDRERIGKAKQEF--QAIIKDPFMLNS-VILVFANK 127
E LR L + ++ +++VVDS +R K EF Q +I + NS +L+ NK
Sbjct: 65 ESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNK 124
Query: 128 QDMKGAMT 135
QD+ A +
Sbjct: 125 QDIAMAKS 132
>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp
pdb|1N6K|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp And Aluminum Fluoride
pdb|1N6L|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gtp
Length = 170
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 54/119 (45%), Gaps = 6/119 (5%)
Query: 17 EMRVVMLGLDAAGKTTILYKLHIGEVLS-TVPTIG--FNVEKVQYKN--VIFTVWDVGGQ 71
+ ++V+LG GK++++ + G+ TIG F + V + V F +WD GQ
Sbjct: 6 QFKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ 65
Query: 72 EKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDM 130
E+ L Y+ I V D + E +AK + + + N VI + NK D+
Sbjct: 66 ERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQA-SPNIVIALSGNKADL 123
>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed
With Gdp
Length = 162
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 7/141 (4%)
Query: 19 RVVMLGLDAAGKTTILYKLHIGEVLSTV-PTIGFN-VEKVQYKN---VIFTVWDVGGQEK 73
++V LG A GKT+I+ + + TIG + + K Y + V +WD GQE+
Sbjct: 3 KLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQER 62
Query: 74 LRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA 133
R L Y ++ I V D +R+ + Q I+ + + +I + NK D+ G
Sbjct: 63 FRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGK-DVIIALVGNKTDL-GD 120
Query: 134 MTPMEVCEGLGLFDLKNRKWH 154
+ + EG N +H
Sbjct: 121 LRKVTYEEGXQKAQEYNTXFH 141
>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With
Gppnhp
Length = 170
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 54/119 (45%), Gaps = 6/119 (5%)
Query: 17 EMRVVMLGLDAAGKTTILYKLHIGEVLS-TVPTIG--FNVEKVQYKN--VIFTVWDVGGQ 71
+ ++V+LG GK++++ + G+ TIG F + V + V F +WD GQ
Sbjct: 6 QFKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ 65
Query: 72 EKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDM 130
E+ L Y+ I V D + E +AK + + + N VI + NK D+
Sbjct: 66 ERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQA-SPNIVIALSGNKADL 123
>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State
Length = 207
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 62/123 (50%), Gaps = 15/123 (12%)
Query: 19 RVVMLGLDAAGKTTILYKLHIGEVLST-VPTIGFNVE---KVQYKNVIFTVWDVGGQE-- 72
++V++G A GKT +L E VPT+ N +V K V +WD GQE
Sbjct: 27 KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 86
Query: 73 -KLRPLWRHYFNNTDGLI--YVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQD 129
+LRPL + +TD ++ + VDS D + +++ +K F N I++ ANK+D
Sbjct: 87 DRLRPL---SYPDTDVILMCFSVDSPD--SLENIPEKWVPEVKH-FCPNVPIILVANKKD 140
Query: 130 MKG 132
++
Sbjct: 141 LRS 143
>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c
(Mouse)
Length = 164
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 55/119 (46%), Gaps = 6/119 (5%)
Query: 17 EMRVVMLGLDAAGKTTILYKLHIGEVLS-TVPTIG--FNVEKVQYKN--VIFTVWDVGGQ 71
+ ++V+LG A GK++++ + G+ TIG F + V + V F +WD GQ
Sbjct: 3 QFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ 62
Query: 72 EKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDM 130
E+ L Y+ I V D + + +AK + + + N VI + NK D+
Sbjct: 63 ERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQA-SPNIVIALAGNKADL 120
>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With
Gppnhp
Length = 170
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 54/119 (45%), Gaps = 6/119 (5%)
Query: 17 EMRVVMLGLDAAGKTTILYKLHIGEVLS-TVPTIG--FNVEKVQYKN--VIFTVWDVGGQ 71
+ ++V+LG GK++++ + G+ TIG F + V + V F +WD GQ
Sbjct: 6 QFKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ 65
Query: 72 EKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDM 130
E+ L Y+ I V D + E +AK + + + N VI + NK D+
Sbjct: 66 ERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQA-SPNIVIALSGNKADL 123
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 55/122 (45%), Gaps = 12/122 (9%)
Query: 19 RVVMLGLDAAGKTTILYKLHIGEVLSTVP-TIGFN----VEKVQYKNVIFTVWDVGGQEK 73
+ +++G GK+ +L++ + ++ P TIG + +V + + +WD GQ +
Sbjct: 32 KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQGR 91
Query: 74 LRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFML---NSVILVFANKQDM 130
R + R Y+ G + V D R + + D L N+VI++ NK D+
Sbjct: 92 FRAVTRSYYRGAAGALMVYDITRR----STYNHLSSWLTDARNLTNPNTVIILIGNKADL 147
Query: 131 KG 132
+
Sbjct: 148 EA 149
>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp
Analogue
Length = 180
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 59/135 (43%), Gaps = 20/135 (14%)
Query: 18 MRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKN---------VIFTVWDV 68
++V++LG GK++++ + V + + F+ V++ N V +WD
Sbjct: 8 LKVILLGDGGVGKSSLMNRY----VTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDT 63
Query: 69 GGQEKLRPLWRHYFNNTDGLIYVVDSLDR---ERIGKAKQEF--QAIIKDPFMLNSVILV 123
GQE+ + L ++ D + DR E +G ++EF A +KDP V+L
Sbjct: 64 AGQERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVVL- 122
Query: 124 FANKQDMKGAMTPME 138
NK D + E
Sbjct: 123 -GNKVDKEDRQVTTE 136
>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
Analogue
Length = 192
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 57/121 (47%), Gaps = 10/121 (8%)
Query: 17 EMRVVMLGLDAAGKTTILYKL---HIGEVLSTVPTIG--FNVEKVQYKNVI--FTVWDVG 69
E++V +LG GK++I+ + H +S PTIG F + V N + F +WD
Sbjct: 23 ELKVCLLGDTGVGKSSIVCRFVQDHFDHNIS--PTIGASFMTKTVPCGNELHKFLIWDTA 80
Query: 70 GQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQD 129
GQE+ L Y+ + + V D ++ K+ + +K+ N V+ + NK D
Sbjct: 81 GQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKE-LKEHGPENIVMAIAGNKCD 139
Query: 130 M 130
+
Sbjct: 140 L 140
>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase
Length = 179
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 63/142 (44%), Gaps = 20/142 (14%)
Query: 15 NSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKN---------VIFTV 65
+S ++++LG GK++++ + + S + F+ V++ N V +
Sbjct: 9 SSLFKIILLGDGGVGKSSLMNRYVTNKFDSQL----FHTIGVEFLNKDLEVDGHFVTMQI 64
Query: 66 WDVGGQEKLRPLWRHYFNNTDGLIY---VVDSLDRERIGKAKQEF--QAIIKDPFMLNSV 120
WD GQE+ R L ++ +D + V DS + + K+EF A +K+P V
Sbjct: 65 WDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFV 124
Query: 121 ILVFANKQDMKGAMTPMEVCEG 142
IL NK D+K E +
Sbjct: 125 IL--GNKTDIKERQVSTEEAQA 144
>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With
Gppnhp
Length = 170
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 54/119 (45%), Gaps = 6/119 (5%)
Query: 17 EMRVVMLGLDAAGKTTILYKLHIGEVLS-TVPTIG--FNVEKVQYKN--VIFTVWDVGGQ 71
+ ++V+LG GK++++ + G+ TIG F + V + V F +WD GQ
Sbjct: 6 QFKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ 65
Query: 72 EKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDM 130
E+ L Y+ I V D + E +AK + + + N VI + NK D+
Sbjct: 66 ERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQA-SPNIVIALSGNKADL 123
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 13/78 (16%)
Query: 59 KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAI---IKDPF 115
K V +WD GQE+ R + R Y+ G + V D RE + A+ + D
Sbjct: 57 KYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRET-------YNALTNWLTDAR 109
Query: 116 ML---NSVILVFANKQDM 130
ML N VI++ NK+D+
Sbjct: 110 MLASQNIVIILCGNKKDL 127
>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With
Gppnhp
Length = 170
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 54/119 (45%), Gaps = 6/119 (5%)
Query: 17 EMRVVMLGLDAAGKTTILYKLHIGEVLS-TVPTIG--FNVEKVQYKN--VIFTVWDVGGQ 71
+ ++V+LG GK++++ + G+ TIG F + V + V F +WD GQ
Sbjct: 6 QFKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ 65
Query: 72 EKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDM 130
E+ L Y+ I V D + E +AK + + + N VI + NK D+
Sbjct: 66 ERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQA-SPNIVIALSGNKADL 123
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 7/75 (9%)
Query: 59 KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFML- 117
K V +WD GQE+ R + R Y+ G + V D RE + D ML
Sbjct: 58 KYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRE----TYNALTNWLTDARMLA 113
Query: 118 --NSVILVFANKQDM 130
N VI++ NK+D+
Sbjct: 114 SQNIVIILCGNKKDL 128
>pdb|2BKU|A Chain A, Kap95p:rangtp Complex
pdb|2BKU|C Chain C, Kap95p:rangtp Complex
Length = 177
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 52/120 (43%), Gaps = 7/120 (5%)
Query: 17 EMRVVMLGLDAAGKTTILYKLHIGEVLST-VPTIGFNVEKVQYKN----VIFTVWDVGGQ 71
+ ++V++G GKTT + + GE VPT+G V + + + F VWD GQ
Sbjct: 10 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 72 EKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMK 131
EK L Y+ I + D R + +++ N I++ NK D+K
Sbjct: 70 EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR--VCENIPIVLCGNKVDIK 127
>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a
pdb|3BC1|E Chain E, Crystal Structure Of The Complex Rab27a-slp2a
Length = 195
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/129 (21%), Positives = 54/129 (41%), Gaps = 15/129 (11%)
Query: 18 MRVVMLGLDAAGKTTILYKLHIGEVLS---TVPTIGFNVEKVQYK------------NVI 62
++ + LG GKT++LY+ G+ S T I F ++V Y+ +
Sbjct: 12 IKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIH 71
Query: 63 FTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVIL 122
+WD G E+ R L +F + G + + D + + + + + N I+
Sbjct: 72 LQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIV 131
Query: 123 VFANKQDMK 131
+ NK D++
Sbjct: 132 LCGNKSDLE 140
>pdb|1BYU|A Chain A, Canine Gdp-Ran
pdb|1BYU|B Chain B, Canine Gdp-Ran
Length = 216
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 52/120 (43%), Gaps = 7/120 (5%)
Query: 17 EMRVVMLGLDAAGKTTILYKLHIGEVLST-VPTIGFNVEKVQYKN----VIFTVWDVGGQ 71
+ ++V++G GKTT + + GE VPT+G V + + + F VWD GQ
Sbjct: 10 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 72 EKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMK 131
EK L Y+ I + D R + +++ N I++ NK D+K
Sbjct: 70 EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR--VCENIPIVLCGNKVDIK 127
>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|D Chain D, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|F Chain F, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|H Chain H, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|2RGN|C Chain C, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|F Chain F, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 196
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 64/131 (48%), Gaps = 19/131 (14%)
Query: 12 FFGNSEMRVVMLGLDAAGKTTILY---KLHIGEVLSTVPTIGFNVE---KVQYKNVIFTV 65
F ++V++G A GKT +L K EV VPT+ N +V K V +
Sbjct: 3 FMAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVY--VPTVFENYVADIEVDGKQVELAL 60
Query: 66 WDVGGQE---KLRPLWRHYFNNTDGLI--YVVDSLDRERIGKAKQEFQAIIKDPFMLNSV 120
WD GQE +LRPL + +TD ++ + +DS D + +++ +K F N
Sbjct: 61 WDTAGQEDYDRLRPL---SYPDTDVILMCFSIDSPD--SLENIPEKWTPEVKH-FCPNVP 114
Query: 121 ILVFANKQDMK 131
I++ NK+D++
Sbjct: 115 IILVGNKKDLR 125
>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
pdb|3MJH|C Chain C, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
Length = 168
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 54/119 (45%), Gaps = 6/119 (5%)
Query: 17 EMRVVMLGLDAAGKTTILYKLHIGEVLS-TVPTIG--FNVEKVQYKN--VIFTVWDVGGQ 71
+ ++V+LG A GK++++ + G+ TIG F + V + V F +WD G
Sbjct: 5 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGL 64
Query: 72 EKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDM 130
E+ L Y+ I V D + E +AK + + + N VI + NK D+
Sbjct: 65 ERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQA-SPNIVIALSGNKADL 122
>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
pdb|2EFD|B Chain B, Ara7ATVPS9A
pdb|2EFD|D Chain D, Ara7ATVPS9A
pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
Length = 181
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 56/120 (46%), Gaps = 12/120 (10%)
Query: 19 RVVMLGLDAAGKTTILYKLHIGEVL----STVPTIGFNVE-KVQYKNVIFTVWDVGGQEK 73
++V+LG AGK++++ + + + ST+ F+ V V F +WD GQE+
Sbjct: 14 KLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 73
Query: 74 LRPLWRHYFNNTDGLIYVVDSLDRERIGKAK---QEFQAIIKDPFMLNSVILVFANKQDM 130
L Y+ I V D ++ +AK QE QA +P N V+ + NK D+
Sbjct: 74 YHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQA-QGNP---NMVMALAGNKSDL 129
>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|C Chain C, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|D Chain D, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LWN|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LWN|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LXR|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa And Gdp (Complex
C)
Length = 185
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 63/124 (50%), Gaps = 19/124 (15%)
Query: 19 RVVMLGLDAAGKTTILY---KLHIGEVLSTVPTIGFNVE---KVQYKNVIFTVWDVGGQE 72
++V++G A GKT +L K EV VPT+ N +V K V +WD GQE
Sbjct: 11 KLVIVGDGACGKTCLLIVFSKDQFPEVY--VPTVFENYVADIEVDGKQVELALWDTAGQE 68
Query: 73 ---KLRPLWRHYFNNTDGLI--YVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANK 127
+LRPL + +TD ++ + +DS D + +++ +K F N I++ NK
Sbjct: 69 DYDRLRPL---SYPDTDVILMCFSIDSPD--SLENIPEKWTPEVKH-FCPNVPIILVGNK 122
Query: 128 QDMK 131
+D++
Sbjct: 123 KDLR 126
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/124 (22%), Positives = 50/124 (40%), Gaps = 8/124 (6%)
Query: 14 GNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVE------KVQYKNVIFTVWD 67
G+ + +++G GK+ +L + + V + VE + K + +WD
Sbjct: 18 GSYLFKYIIIGDTGVGKSCLLLQF-TDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWD 76
Query: 68 VGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANK 127
GQE R + R Y+ G + V D RE + + N VI++ NK
Sbjct: 77 TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLED-ARQHSSSNMVIMLIGNK 135
Query: 128 QDMK 131
D++
Sbjct: 136 SDLE 139
>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
pdb|1CC0|C Chain C, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
Length = 190
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 63/125 (50%), Gaps = 19/125 (15%)
Query: 19 RVVMLGLDAAGKTTILY---KLHIGEVLSTVPTIGFNVE---KVQYKNVIFTVWDVGGQE 72
++V++G A GKT +L K EV VPT+ N +V K V +WD GQE
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVY--VPTVFENYVADIEVDGKQVELALWDTAGQE 64
Query: 73 ---KLRPLWRHYFNNTDGLI--YVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANK 127
+LRPL + +TD ++ + +DS D + +++ +K F N I++ NK
Sbjct: 65 DYDRLRPL---SYPDTDVILMCFSIDSPD--SLENIPEKWTPEVKH-FCPNVPIILVGNK 118
Query: 128 QDMKG 132
+D++
Sbjct: 119 KDLRN 123
>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
pdb|1S1C|B Chain B, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
Length = 183
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 63/125 (50%), Gaps = 19/125 (15%)
Query: 19 RVVMLGLDAAGKTTILY---KLHIGEVLSTVPTIGFNVE---KVQYKNVIFTVWDVGGQE 72
++V++G A GKT +L K EV VPT+ N +V K V +WD GQE
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVY--VPTVFENYVADIEVDGKQVELALWDTAGQE 66
Query: 73 ---KLRPLWRHYFNNTDGLI--YVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANK 127
+LRPL + +TD ++ + +DS D + +++ +K F N I++ NK
Sbjct: 67 DYDRLRPL---SYPDTDVILMCFSIDSPD--SLENIPEKWTPEVKH-FCPNVPIILVGNK 120
Query: 128 QDMKG 132
+D++
Sbjct: 121 KDLRN 125
>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex
With Rhogdi In Its Active Gppnhp-Bound Form
Length = 195
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 63/124 (50%), Gaps = 19/124 (15%)
Query: 19 RVVMLGLDAAGKTTILY---KLHIGEVLSTVPTIGFNVE---KVQYKNVIFTVWDVGGQE 72
++V++G A GKT +L K EV VPT+ N +V K V +WD GQE
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVY--VPTVFENYVADIEVDGKQVELALWDTAGQE 66
Query: 73 ---KLRPLWRHYFNNTDGLI--YVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANK 127
+LRPL + +TD ++ + +DS D + +++ +K F N I++ NK
Sbjct: 67 DYDRLRPL---SYPDTDVILMCFSIDSPD--SLENIPEKWTPEVKH-FCPNVPIILVGNK 120
Query: 128 QDMK 131
+D++
Sbjct: 121 KDLR 124
>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|1XCG|F Chain F, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|3T06|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
pdb|3T06|F Chain F, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
Length = 178
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 63/125 (50%), Gaps = 19/125 (15%)
Query: 19 RVVMLGLDAAGKTTILY---KLHIGEVLSTVPTIGFNVE---KVQYKNVIFTVWDVGGQE 72
++V++G A GKT +L K EV VPT+ N +V K V +WD GQE
Sbjct: 5 KLVIVGDGACGKTCLLIVNSKDQFPEVY--VPTVFENYVADIEVDGKQVELALWDTAGQE 62
Query: 73 ---KLRPLWRHYFNNTDGLI--YVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANK 127
+LRPL + +TD ++ + +DS D + +++ +K F N I++ NK
Sbjct: 63 DYDRLRPL---SYPDTDVILMCFSIDSPD--SLENIPEKWTPEVKH-FCPNVPIILVGNK 116
Query: 128 QDMKG 132
+D++
Sbjct: 117 KDLRN 121
>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|D Chain D, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|F Chain F, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|H Chain H, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
Length = 192
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 63/124 (50%), Gaps = 19/124 (15%)
Query: 19 RVVMLGLDAAGKTTILY---KLHIGEVLSTVPTIGFNVE---KVQYKNVIFTVWDVGGQE 72
++V++G A GKT +L K EV VPT+ N +V K V +WD GQE
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVY--VPTVFENYVADIEVDGKQVELALWDTAGQE 66
Query: 73 ---KLRPLWRHYFNNTDGLI--YVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANK 127
+LRPL + +TD ++ + +DS D + +++ +K F N I++ NK
Sbjct: 67 DYDRLRPL---SYPDTDVILMCFSIDSPD--SLENIPEKWTPEVKH-FCPNVPIILVGNK 120
Query: 128 QDMK 131
+D++
Sbjct: 121 KDLR 124
>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
pdb|3KZ1|F Chain F, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
Length = 182
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 63/125 (50%), Gaps = 19/125 (15%)
Query: 19 RVVMLGLDAAGKTTILY---KLHIGEVLSTVPTIGFNVE---KVQYKNVIFTVWDVGGQE 72
++V++G A GKT +L K EV VPT+ N +V K V +WD GQE
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKDQFPEVY--VPTVFENYVADIEVDGKQVELALWDTAGQE 65
Query: 73 ---KLRPLWRHYFNNTDGLI--YVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANK 127
+LRPL + +TD ++ + +DS D + +++ +K F N I++ NK
Sbjct: 66 DYDRLRPL---SYPDTDVILMCFSIDSPD--SLENIPEKWTPEVKH-FCPNVPIILVGNK 119
Query: 128 QDMKG 132
+D++
Sbjct: 120 KDLRN 124
>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex
pdb|3TVD|B Chain B, Crystal Structure Of Mouse Rhoa-Gtp Complex
Length = 193
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 63/125 (50%), Gaps = 19/125 (15%)
Query: 19 RVVMLGLDAAGKTTILY---KLHIGEVLSTVPTIGFNVE---KVQYKNVIFTVWDVGGQE 72
++V++G A GKT +L K EV VPT+ N +V K V +WD GQE
Sbjct: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVY--VPTVFENYVADIEVDGKQVELALWDTAGQE 64
Query: 73 ---KLRPLWRHYFNNTDGLI--YVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANK 127
+LRPL + +TD ++ + +DS D + +++ +K F N I++ NK
Sbjct: 65 DYDRLRPL---SYPDTDVILMCFSIDSPD--SLENIPEKWTPEVKH-FCPNVPIILVGNK 118
Query: 128 QDMKG 132
+D++
Sbjct: 119 KDLRN 123
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 5/97 (5%)
Query: 19 RVVMLGLDAAGKTTILYKLHIGEVL-STVPTIG--FNVEKVQY--KNVIFTVWDVGGQEK 73
+++++G GK+++L + S + TIG F + V+ + V +WD GQE+
Sbjct: 11 KLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQER 70
Query: 74 LRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAI 110
R + Y+ T G+I V D E K+ I
Sbjct: 71 FRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEI 107
>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
pdb|1S8F|B Chain B, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
Length = 177
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 62/142 (43%), Gaps = 20/142 (14%)
Query: 15 NSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKN---------VIFTV 65
+S +V++LG GK++++ + V + T F+ V++ N V +
Sbjct: 7 SSLFKVILLGDGGVGKSSLMNRY----VTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQI 62
Query: 66 WDVGGQEKLRPLWRHYFNNTDGLIY---VVDSLDRERIGKAKQEF--QAIIKDPFMLNSV 120
WD GQE+ R L ++ +D + V DS + + K+EF A +K+P V
Sbjct: 63 WDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFV 122
Query: 121 ILVFANKQDMKGAMTPMEVCEG 142
IL NK D+ E +
Sbjct: 123 IL--GNKIDISERQVSTEEAQA 142
>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX
Length = 177
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 63/125 (50%), Gaps = 19/125 (15%)
Query: 19 RVVMLGLDAAGKTTILY---KLHIGEVLSTVPTIGFNVE---KVQYKNVIFTVWDVGGQE 72
++V++G A GKT +L K EV VPT+ N +V K V +WD GQE
Sbjct: 5 KLVIVGDGACGKTCLLIVNSKDQFPEVY--VPTVFENYVADIEVDGKQVELALWDTAGQE 62
Query: 73 ---KLRPLWRHYFNNTDGLI--YVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANK 127
+LRPL + +TD ++ + +DS D + +++ +K F N I++ NK
Sbjct: 63 DYDRLRPL---SYPDTDVILMCFSIDSPD--SLENIPEKWTPEVKH-FCPNVPIILVGNK 116
Query: 128 QDMKG 132
+D++
Sbjct: 117 KDLRN 121
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 44/93 (47%), Gaps = 6/93 (6%)
Query: 11 VFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLST--VPTIGFN----VEKVQYKNVIFT 64
V F + +V+++G GKT +L + G L+ + T+G + V V V
Sbjct: 4 VDFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQ 63
Query: 65 VWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDR 97
+WD GQE+ R + Y+ + L+ + D ++
Sbjct: 64 MWDTAGQERFRSVTHAYYRDAHALLLLYDVTNK 96
>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap
Domain Of Arhgap20
Length = 180
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 63/125 (50%), Gaps = 19/125 (15%)
Query: 19 RVVMLGLDAAGKTTILY---KLHIGEVLSTVPTIGFNVE---KVQYKNVIFTVWDVGGQE 72
++V++G A GKT +L K EV VPT+ N +V K V +WD GQE
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVY--VPTVFENYVADIEVDGKQVELALWDTAGQE 64
Query: 73 ---KLRPLWRHYFNNTDGLI--YVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANK 127
+LRPL + +TD ++ + +DS D + +++ +K F N I++ NK
Sbjct: 65 DYDRLRPL---SYPDTDVILMCFSIDSPD--SLENIPEKWTPEVKH-FCPNVPIILVGNK 118
Query: 128 QDMKG 132
+D++
Sbjct: 119 KDLRN 123
>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap
pdb|1FTN|A Chain A, Crystal Structure Of The Human RhoaGDP COMPLEX
Length = 193
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 63/125 (50%), Gaps = 19/125 (15%)
Query: 19 RVVMLGLDAAGKTTILY---KLHIGEVLSTVPTIGFNVE---KVQYKNVIFTVWDVGGQE 72
++V++G A GKT +L K EV VPT+ N +V K V +WD GQE
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVY--VPTVFENYVADIEVDGKQVELALWDTAGQE 64
Query: 73 ---KLRPLWRHYFNNTDGLI--YVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANK 127
+LRPL + +TD ++ + +DS D + +++ +K F N I++ NK
Sbjct: 65 DYDRLRPL---SYPDTDVILMCFSIDSPD--SLENIPEKWTPEVKH-FCPNVPIILVGNK 118
Query: 128 QDMKG 132
+D++
Sbjct: 119 KDLRN 123
>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex
pdb|2GCO|B Chain B, Crystal Structure Of The Human Rhoc-gppnhp Complex
pdb|2GCP|A Chain A, Crystal Structure Of The Human Rhoc-Gsp Complex
Length = 201
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 63/124 (50%), Gaps = 19/124 (15%)
Query: 19 RVVMLGLDAAGKTTILY---KLHIGEVLSTVPTIGFNVE---KVQYKNVIFTVWDVGGQE 72
++V++G A GKT +L K EV VPT+ N +V K V +WD GQE
Sbjct: 27 KLVIVGDGACGKTCLLIVFSKDQFPEVY--VPTVFENYIADIEVDGKQVELALWDTAGQE 84
Query: 73 ---KLRPLWRHYFNNTDGLI--YVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANK 127
+LRPL + +TD ++ + +DS D + +++ +K F N I++ NK
Sbjct: 85 DYDRLRPL---SYPDTDVILMCFSIDSPD--SLENIPEKWTPEVKH-FCPNVPIILVGNK 138
Query: 128 QDMK 131
+D++
Sbjct: 139 KDLR 142
>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
pdb|1WMS|B Chain B, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
Length = 177
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 62/142 (43%), Gaps = 20/142 (14%)
Query: 15 NSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKN---------VIFTV 65
+S +V++LG GK++++ + V + T F+ V++ N V +
Sbjct: 5 SSLFKVILLGDGGVGKSSLMNRY----VTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQI 60
Query: 66 WDVGGQEKLRPLWRHYFNNTDGLIY---VVDSLDRERIGKAKQEF--QAIIKDPFMLNSV 120
WD GQE+ R L ++ +D + V DS + + K+EF A +K+P V
Sbjct: 61 WDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFV 120
Query: 121 ILVFANKQDMKGAMTPMEVCEG 142
IL NK D+ E +
Sbjct: 121 IL--GNKIDISERQVSTEEAQA 140
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue
Length = 201
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 54/123 (43%), Gaps = 18/123 (14%)
Query: 19 RVVMLGLDAAGKTTILYKLHIG----------EVLSTVPTIGFNVEKVQYKNVIFTVWDV 68
++V++G GKT ++ + G V + T+ N EKV+ + +WD
Sbjct: 28 KIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQ-----IWDT 82
Query: 69 GGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFA-NK 127
GQE+ R + + Y+ + + LI D E + + I + + N VI V NK
Sbjct: 83 AGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREI--EQYASNKVITVLVGNK 140
Query: 128 QDM 130
D+
Sbjct: 141 IDL 143
>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
pdb|1Z2C|C Chain C, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
Length = 193
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 63/124 (50%), Gaps = 19/124 (15%)
Query: 19 RVVMLGLDAAGKTTILY---KLHIGEVLSTVPTIGFNVE---KVQYKNVIFTVWDVGGQE 72
++V++G A GKT +L K EV VPT+ N +V K V +WD GQE
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVY--VPTVFENYIADIEVDGKQVELALWDTAGQE 64
Query: 73 ---KLRPLWRHYFNNTDGLI--YVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANK 127
+LRPL + +TD ++ + +DS D + +++ +K F N I++ NK
Sbjct: 65 DYDRLRPL---SYPDTDVILMCFSIDSPD--SLENIPEKWTPEVKH-FCPNVPIILVGNK 118
Query: 128 QDMK 131
+D++
Sbjct: 119 KDLR 122
>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex
Length = 201
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 63/124 (50%), Gaps = 19/124 (15%)
Query: 19 RVVMLGLDAAGKTTILY---KLHIGEVLSTVPTIGFNVE---KVQYKNVIFTVWDVGGQE 72
++V++G A GKT +L K EV VPT+ N +V K V +WD GQE
Sbjct: 27 KLVIVGDGACGKTCLLIVFSKDQFPEVY--VPTVFENYIADIEVDGKQVELALWDTAGQE 84
Query: 73 ---KLRPLWRHYFNNTDGLI--YVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANK 127
+LRPL + +TD ++ + +DS D + +++ +K F N I++ NK
Sbjct: 85 DYDRLRPL---SYPDTDVILMCFSIDSPD--SLENIPEKWTPEVKH-FXPNVPIILVGNK 138
Query: 128 QDMK 131
+D++
Sbjct: 139 KDLR 142
>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The
Effector Domain Of The Protein Kinase PknPRK1
pdb|1A2B|A Chain A, Human Rhoa Complexed With Gtp Analogue
Length = 182
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 63/125 (50%), Gaps = 19/125 (15%)
Query: 19 RVVMLGLDAAGKTTILY---KLHIGEVLSTVPTIGFNVE---KVQYKNVIFTVWDVGGQE 72
++V++G A GKT +L K EV VPT+ N +V K V +WD GQE
Sbjct: 8 KLVIVGDVACGKTCLLIVFSKDQFPEVY--VPTVFENYVADIEVDGKQVELALWDTAGQE 65
Query: 73 ---KLRPLWRHYFNNTDGLI--YVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANK 127
+LRPL + +TD ++ + +DS D + +++ +K F N I++ NK
Sbjct: 66 DYDRLRPL---SYPDTDVILMCFSIDSPD--SLENIPEKWTPEVKH-FCPNVPIILVGNK 119
Query: 128 QDMKG 132
+D++
Sbjct: 120 KDLRN 124
>pdb|3LLU|A Chain A, Crystal Structure Of The Nucleotide-Binding Domain Of Ras-
Related Gtp-Binding Protein C
Length = 196
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 50/97 (51%), Gaps = 12/97 (12%)
Query: 10 DVFFGNSEMRVVMLGLDAAGKTTI----LYKLHIGEVL---STVPTIGFNVEKVQYKNVI 62
+++F S+ R++++GL +GK++I +K+ E L ST ++ + N
Sbjct: 13 NLYFQGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVN-- 70
Query: 63 FTVWDVGGQ-EKLRPLWRH--YFNNTDGLIYVVDSLD 96
F +WD GQ + P + + F T LIYV+D+ D
Sbjct: 71 FQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQD 107
>pdb|1ZCA|A Chain A, Crystal Structure Of G Alpha 12 In Complex With Gdp, Mg2+
And Alf4-
pdb|1ZCA|B Chain B, Crystal Structure Of G Alpha 12 In Complex With Gdp, Mg2+
And Alf4-
Length = 359
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 10/82 (12%)
Query: 59 KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL--------DRE--RIGKAKQEFQ 108
K + F + DVGGQ R W F+ ++++V S DR R+ ++ F+
Sbjct: 197 KKIPFKMVDVGGQRSQRQKWFQCFDGITSILFMVSSSEYDQVLMEDRRTNRLVESMNIFE 256
Query: 109 AIIKDPFMLNSVILVFANKQDM 130
I+ + N I++F NK D+
Sbjct: 257 TIVNNKLFFNVSIILFLNKMDL 278
>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound
To Gmppnp
pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound
To Gmppnp
Length = 179
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 7/88 (7%)
Query: 13 FGNS--EMRVVMLGLDAAGKTTILYKLHIGEVLSTV-PTIGFN-VEKVQY---KNVIFTV 65
FGN + ++V LG + GKT+++ + +T TIG + + K Y + V +
Sbjct: 8 FGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQL 67
Query: 66 WDVGGQEKLRPLWRHYFNNTDGLIYVVD 93
WD GQE+ R L Y ++ + V D
Sbjct: 68 WDTAGQERFRSLIPSYIRDSTVAVVVYD 95
>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|H Chain H, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|I Chain I, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 220
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/128 (21%), Positives = 50/128 (39%), Gaps = 15/128 (11%)
Query: 18 MRVVMLGLDAAGKTTILYKL---HIGEVLSTVPTIGFNVEKVQYKN------------VI 62
++++ LG GKTT LY+ T I F ++V Y V
Sbjct: 12 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVH 71
Query: 63 FTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVIL 122
+WD G E+ R L +F + G + + D ++ + + + + N I+
Sbjct: 72 LQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV 131
Query: 123 VFANKQDM 130
+ NK D+
Sbjct: 132 LIGNKADL 139
>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
pdb|2IEY|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
Length = 195
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/128 (21%), Positives = 49/128 (38%), Gaps = 15/128 (11%)
Query: 18 MRVVMLGLDAAGKTTILYKL---HIGEVLSTVPTIGFNVEKVQYKN------------VI 62
++++ LG GKTT LY+ T I F ++V Y V
Sbjct: 12 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVH 71
Query: 63 FTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVIL 122
+WD G E+ R L +F + G + D ++ + + + + N I+
Sbjct: 72 LQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPDIV 131
Query: 123 VFANKQDM 130
+ NK D+
Sbjct: 132 LIGNKADL 139
>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 223
Score = 36.6 bits (83), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 42/90 (46%), Gaps = 10/90 (11%)
Query: 9 FDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEV-LSTVPTIGFNVE----KVQYKNVIF 63
+D+ F ++V++G GK+ +L + E + + TIG +++ K +
Sbjct: 10 YDLLF-----KIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKA 64
Query: 64 TVWDVGGQEKLRPLWRHYFNNTDGLIYVVD 93
+WD GQE+ R + Y+ G + V D
Sbjct: 65 QIWDTAGQERYRAITSAYYRGAVGALIVYD 94
>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase
pdb|1Z0D|C Chain C, Gdp-bound Rab5c Gtpase
Length = 167
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 54/119 (45%), Gaps = 6/119 (5%)
Query: 17 EMRVVMLGLDAAGKTTILYKLHIGEVLS-TVPTIG--FNVEKVQYKN--VIFTVWDVGGQ 71
+ ++V+LG A GK++++ + G+ TIG F + V + V F +WD G
Sbjct: 5 QFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGL 64
Query: 72 EKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDM 130
E+ L Y+ I V D + + +AK + + + N VI + NK D+
Sbjct: 65 ERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQA-SPNIVIALAGNKADL 122
>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IF0|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 200
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/128 (21%), Positives = 50/128 (39%), Gaps = 15/128 (11%)
Query: 18 MRVVMLGLDAAGKTTILYKL---HIGEVLSTVPTIGFNVEKVQYKN------------VI 62
++++ LG GKTT LY+ T I F ++V Y V
Sbjct: 12 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVH 71
Query: 63 FTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVIL 122
+WD G E+ R L +F + G + + D ++ + + + + N I+
Sbjct: 72 LQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV 131
Query: 123 VFANKQDM 130
+ NK D+
Sbjct: 132 LIGNKADL 139
>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
pdb|2ZET|B Chain B, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
Length = 203
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/128 (21%), Positives = 49/128 (38%), Gaps = 15/128 (11%)
Query: 18 MRVVMLGLDAAGKTTILYKL---HIGEVLSTVPTIGFNVEKVQYKN------------VI 62
++++ LG GKTT LY+ T I F ++V Y V
Sbjct: 12 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVH 71
Query: 63 FTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVIL 122
+WD G E+ R L +F + G + D ++ + + + + N I+
Sbjct: 72 LQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPDIV 131
Query: 123 VFANKQDM 130
+ NK D+
Sbjct: 132 LIGNKADL 139
>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp
Length = 195
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 40/88 (45%), Gaps = 5/88 (5%)
Query: 16 SEMRVVMLGLDAAGKTTILYKLH---IGEVLSTVPTIGFNVEKVQY--KNVIFTVWDVGG 70
+ ++++++G GK+++L + L+ + F V+ + +WD G
Sbjct: 14 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAG 73
Query: 71 QEKLRPLWRHYFNNTDGLIYVVDSLDRE 98
QE+ R L Y+ G+I V D R+
Sbjct: 74 QERFRTLTPSYYRGAQGVILVYDVTRRD 101
>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|B Chain B, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|C Chain C, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|D Chain D, Gdp-Bound Rab2a Gtpase
Length = 174
Score = 36.2 bits (82), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 32/144 (22%), Positives = 56/144 (38%), Gaps = 31/144 (21%)
Query: 1 MGQAFRKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVE------ 54
+G A+ LF + +++G GK+ +L + + V + VE
Sbjct: 3 LGSAYAYLF---------KYIIIGDTGVGKSCLLLQF-TDKRFQPVHDLTIGVEFGARMI 52
Query: 55 KVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGK-------AKQEF 107
+ K + +WD GQE R + R Y+ G + V D R+ A+Q
Sbjct: 53 TIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHS 112
Query: 108 QAIIKDPFMLNSVILVFANKQDMK 131
+ N VI++ NK D++
Sbjct: 113 NS--------NMVIMLIGNKSDLE 128
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 36.2 bits (82), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 7/75 (9%)
Query: 59 KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFML- 117
K V +WD G E+ R + R Y+ G + V D RE + D ML
Sbjct: 55 KYVKLQIWDTAGLERFRSVTRSYYRGAAGALLVYDITSRE----TYNALTNWLTDARMLA 110
Query: 118 --NSVILVFANKQDM 130
N VI++ NK+D+
Sbjct: 111 SQNIVIILCGNKKDL 125
>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase
Length = 170
Score = 35.8 bits (81), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 5/82 (6%)
Query: 17 EMRVVMLGLDAAGKTTILYKLHIGEVLSTV-PTIGFN-VEKVQY---KNVIFTVWDVGGQ 71
+ ++V LG + GKT+++ + +T TIG + + K Y + + +WD GQ
Sbjct: 6 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQ 65
Query: 72 EKLRPLWRHYFNNTDGLIYVVD 93
E+ R L Y ++ + V D
Sbjct: 66 ERFRSLIPSYIRDSAAAVVVYD 87
>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 176
Score = 35.4 bits (80), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 51/120 (42%), Gaps = 7/120 (5%)
Query: 17 EMRVVMLGLDAAGKTTILYKLHIGEVLST-VPTIGFNVEKVQYKN----VIFTVWDVGGQ 71
+ ++V++G GKTT + + GE V T+G V + + + F VWD GQ
Sbjct: 10 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 72 EKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMK 131
EK L Y+ I + D R + +++ N I++ NK D+K
Sbjct: 70 EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR--VCENIPIVLCGNKVDIK 127
>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|C Chain C, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 216
Score = 35.4 bits (80), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 51/120 (42%), Gaps = 7/120 (5%)
Query: 17 EMRVVMLGLDAAGKTTILYKLHIGEVLST-VPTIGFNVEKVQYKN----VIFTVWDVGGQ 71
+ ++V++G GKTT + + GE V T+G V + + + F VWD GQ
Sbjct: 10 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 72 EKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMK 131
EK L Y+ I + D R + +++ N I++ NK D+K
Sbjct: 70 EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR--VCENIPIVLCGNKVDIK 127
>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp
pdb|3GJ0|B Chain B, Crystal Structure Of Human Rangdp
pdb|3GJ3|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf2 Complex
Length = 221
Score = 35.0 bits (79), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 51/120 (42%), Gaps = 7/120 (5%)
Query: 17 EMRVVMLGLDAAGKTTILYKLHIGEVLST-VPTIGFNVEKVQYKN----VIFTVWDVGGQ 71
+ ++V++G GKTT + + GE V T+G V + + + F VWD GQ
Sbjct: 15 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 74
Query: 72 EKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMK 131
EK L Y+ I + D R + +++ N I++ NK D+K
Sbjct: 75 EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR--VCENIPIVLCGNKVDIK 132
>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 35.0 bits (79), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 5/82 (6%)
Query: 17 EMRVVMLGLDAAGKTTILYKLHIGEVLSTV-PTIGFN-VEKVQY---KNVIFTVWDVGGQ 71
+ ++V LG + GKT+++ + +T TIG + + K Y + V +WD GQ
Sbjct: 2 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 61
Query: 72 EKLRPLWRHYFNNTDGLIYVVD 93
E+ R L Y ++ + V D
Sbjct: 62 ERFRSLIPSYIRDSTVAVVVYD 83
>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex
pdb|1A2K|D Chain D, Gdpran-Ntf2 Complex
pdb|1A2K|E Chain E, Gdpran-Ntf2 Complex
pdb|1IBR|A Chain A, Complex Of Ran With Importin Beta
pdb|1IBR|C Chain C, Complex Of Ran With Importin Beta
pdb|1I2M|A Chain A, Ran-Rcc1-So4 Complex
pdb|1I2M|C Chain C, Ran-Rcc1-So4 Complex
pdb|1K5D|A Chain A, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|D Chain D, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|G Chain G, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|J Chain J, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|A Chain A, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|D Chain D, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|G Chain G, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|J Chain J, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|3CH5|A Chain A, The Crystal Structure Of The Rangdp-Nup153znf2 Complex
pdb|3A6P|C Chain C, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|H Chain H, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|4GPT|A Chain A, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|A Chain A, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
pdb|4HAT|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|A Chain A, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
pdb|4HAW|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
pdb|4HAX|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
pdb|4HAY|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
pdb|4HAZ|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
pdb|4HB0|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
pdb|4HB2|A Chain A, Crystal Structure Of Crm1-ran-ranbp1
pdb|4HB3|A Chain A, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
pdb|4HB4|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 216
Score = 35.0 bits (79), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 51/120 (42%), Gaps = 7/120 (5%)
Query: 17 EMRVVMLGLDAAGKTTILYKLHIGEVLST-VPTIGFNVEKVQYKN----VIFTVWDVGGQ 71
+ ++V++G GKTT + + GE V T+G V + + + F VWD GQ
Sbjct: 10 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 72 EKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMK 131
EK L Y+ I + D R + +++ N I++ NK D+K
Sbjct: 70 EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR--VCENIPIVLCGNKVDIK 127
>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ4|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ5|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ5|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ6|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf1 Complex
pdb|3GJ7|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ7|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ8|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
pdb|3GJ8|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
Length = 221
Score = 35.0 bits (79), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 51/120 (42%), Gaps = 7/120 (5%)
Query: 17 EMRVVMLGLDAAGKTTILYKLHIGEVLST-VPTIGFNVEKVQYKN----VIFTVWDVGGQ 71
+ ++V++G GKTT + + GE V T+G V + + + F VWD GQ
Sbjct: 15 QFKLVLVGDGGTGKTTFVKRHLTGESEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 74
Query: 72 EKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMK 131
EK L Y+ I + D R + +++ N I++ NK D+K
Sbjct: 75 EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR--VCENIPIVLCGNKVDIK 132
>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|B Chain B, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|C Chain C, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|D Chain D, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
Length = 162
Score = 35.0 bits (79), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 5/82 (6%)
Query: 17 EMRVVMLGLDAAGKTTILYKLHIGEVLSTV-PTIGFN-VEKVQY---KNVIFTVWDVGGQ 71
+ ++V LG + GKT+++ + +T TIG + + K Y + V +WD GQ
Sbjct: 1 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 60
Query: 72 EKLRPLWRHYFNNTDGLIYVVD 93
E+ R L Y ++ + V D
Sbjct: 61 ERFRSLIPSYIRDSTVAVVVYD 82
>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex
pdb|1RRP|C Chain C, Structure Of The Ran-Gppnhp-Ranbd1 Complex
Length = 204
Score = 35.0 bits (79), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 51/120 (42%), Gaps = 7/120 (5%)
Query: 17 EMRVVMLGLDAAGKTTILYKLHIGEVLST-VPTIGFNVEKVQYKN----VIFTVWDVGGQ 71
+ ++V++G GKTT + + GE V T+G V + + + F VWD GQ
Sbjct: 3 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 62
Query: 72 EKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMK 131
EK L Y+ I + D R + +++ N I++ NK D+K
Sbjct: 63 EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR--VCENIPIVLCGNKVDIK 120
>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With
Gdp
Length = 180
Score = 35.0 bits (79), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 61/123 (49%), Gaps = 15/123 (12%)
Query: 19 RVVMLGLDAAGKTTILYKLHIGEVLST-VPTIGFNVE---KVQYKNVIFTVWDVGGQE-- 72
++V++G A GKT +L + + VPT+ N +V K V +WD GQE
Sbjct: 7 KLVIVGDVACGKTCLLIVFSKDQFPAVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 66
Query: 73 -KLRPLWRHYFNNTDGLI--YVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQD 129
+ RPL + +TD ++ + +DS D + +++ +K F N I++ NK+D
Sbjct: 67 DRARPL---SYPDTDVILMCFSIDSPD--SLENIPEKWTPEVKH-FCPNVPIILVGNKKD 120
Query: 130 MKG 132
++
Sbjct: 121 LRN 123
>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant
Length = 216
Score = 35.0 bits (79), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 51/120 (42%), Gaps = 7/120 (5%)
Query: 17 EMRVVMLGLDAAGKTTILYKLHIGEVLST-VPTIGFNVEKVQYKN----VIFTVWDVGGQ 71
+ ++V++G GKTT + + GE V T+G V + + + F VWD GQ
Sbjct: 10 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 72 EKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMK 131
EK L Y+ I + D R + +++ N I++ NK D+K
Sbjct: 70 EKFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR--VCENIPIVLCGNKVDIK 127
>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 216
Score = 34.7 bits (78), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 50/120 (41%), Gaps = 7/120 (5%)
Query: 17 EMRVVMLGLDAAGKTTILYKLHIGEVLST-VPTIGFNVEKVQYKN----VIFTVWDVGGQ 71
+ ++V++G GKTT + + GE V T+G V + + + F VWD GQ
Sbjct: 10 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 72 EKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMK 131
EK L Y+ I D R + +++ N I++ NK D+K
Sbjct: 70 EKFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPNWHRDLVR--VCENIPIVLCGNKVDIK 127
>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant
pdb|1QG4|B Chain B, Canine Gdp-Ran F72y Mutant
Length = 216
Score = 34.3 bits (77), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 51/120 (42%), Gaps = 7/120 (5%)
Query: 17 EMRVVMLGLDAAGKTTILYKLHIGEVLST-VPTIGFNVEKVQYKN----VIFTVWDVGGQ 71
+ ++V++G GKTT + + GE V T+G V + + + F VWD GQ
Sbjct: 10 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 72 EKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMK 131
EK L Y+ I + D R + +++ N I++ NK D+K
Sbjct: 70 EKYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR--VCENIPIVLCGNKVDIK 127
>pdb|3DPU|A Chain A, Roccor Domain Tandem Of Rab Family Protein (Roco)
pdb|3DPU|B Chain B, Roccor Domain Tandem Of Rab Family Protein (Roco)
Length = 535
Score = 34.3 bits (77), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 15/92 (16%)
Query: 17 EMRVVMLGLDAAGKTTILYKLHIGEVLST--VPTIGFNVEKVQYKNV------------I 62
E++V ++G AGKT++L +L IGE T G NV Q N+ +
Sbjct: 41 EIKVHLIGDGMAGKTSLLKQL-IGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECL 99
Query: 63 FTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDS 94
F WD GGQE + + + + + ++DS
Sbjct: 100 FHFWDFGGQEIMHASHQFFMTRSSVYMLLLDS 131
>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space
Group
pdb|1Z2A|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In P2(1)2(1)2(1)
Space Group
Length = 168
Score = 33.9 bits (76), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 44/86 (51%), Gaps = 5/86 (5%)
Query: 18 MRVVMLGLDAAGKTTILYKLHIGEVLSTVP-TIGFN-VEK---VQYKNVIFTVWDVGGQE 72
+++V++G A GK++++ + G TIG + +E+ V ++V +WD GQE
Sbjct: 6 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE 65
Query: 73 KLRPLWRHYFNNTDGLIYVVDSLDRE 98
+ + + Y+ + V + DRE
Sbjct: 66 EFDAITKAYYRGAQACVLVFSTTDRE 91
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 33.9 bits (76), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 13/117 (11%)
Query: 18 MRVVMLGLDAAGKTTILYKLHIGEVLSTV--PTIG--FNVEKVQY---KNVIFTVWDVGG 70
++V++LG GKT+++++ ++ + S TIG F ++V K VWD G
Sbjct: 9 LKVIILGDSGVGKTSLMHR-YVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAG 67
Query: 71 QEKLRPLWRHYFNNTDGLIYVVDSLDR---ERIGKAKQEF--QAIIKDPFMLNSVIL 122
QE+ + L ++ D + V D + E I + EF A + P VIL
Sbjct: 68 QERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVIL 124
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 33.5 bits (75), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 56/136 (41%), Gaps = 34/136 (25%)
Query: 18 MRVVMLGLDAAGKTTIL-----------YKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVW 66
++V++LG GKT+++ YK IG T + V + V +W
Sbjct: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVM------VDDRLVTMQIW 62
Query: 67 DVGGQEKLRPLWRHYFNNTDGLIYVVD--------SLDRERIGKAKQEF--QAIIKDPFM 116
D GQE+ + L ++ D + V D +LD R EF QA +DP
Sbjct: 63 DTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWR-----DEFLIQASPRDP-- 115
Query: 117 LNSVILVFANKQDMKG 132
N +V NK D++
Sbjct: 116 ENFPFVVLGNKIDLEN 131
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 33.1 bits (74), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 62/131 (47%), Gaps = 24/131 (18%)
Query: 18 MRVVMLGLDAAGKTTILYKLHIGEVLSTV--PTIG--FNVEKVQYKNVIFT--VWDVGGQ 71
++V++LG GKT+++ + ++ + S TIG F ++V + + T +WD GQ
Sbjct: 9 LKVIILGDSGVGKTSLMNQ-YVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 72 EKLRPLWRHYFNNTDGLIYVVD--------SLDRERIGKAKQEF--QAIIKDPFMLNSVI 121
E+ + L ++ D + V D +LD R EF QA +DP N
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWR-----DEFLIQASPRDP--ENFPF 120
Query: 122 LVFANKQDMKG 132
+V NK D++
Sbjct: 121 VVLGNKIDLEN 131
>pdb|2Q3F|A Chain A, X-Ray Crystal Structure Of Putative Human Ras-Related
Gtp Binding D In Complex With Gmppnp
pdb|2Q3F|B Chain B, X-Ray Crystal Structure Of Putative Human Ras-Related
Gtp Binding D In Complex With Gmppnp
Length = 181
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 8/91 (8%)
Query: 14 GNSEMRVVMLGLDAAGKTTI----LYKLHIGEVLSTVPTIGFNVEKVQYKNVI-FTVWDV 68
G + R+++ GL +GK++I +K E L T E V + + F +WD
Sbjct: 1 GEVKPRILLXGLRRSGKSSIQKVVFHKXSPNETLFLESTNKICREDVSNSSFVNFQIWDF 60
Query: 69 GGQ-EKLRPL--WRHYFNNTDGLIYVVDSLD 96
GQ + P + F T LI+V+DS D
Sbjct: 61 PGQIDFFDPTFDYEXIFRGTGALIFVIDSQD 91
>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 55/136 (40%), Gaps = 34/136 (25%)
Query: 18 MRVVMLGLDAAGKTTIL-----------YKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVW 66
++V++LG GKT+++ YK IG T + V + V +W
Sbjct: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVM------VDDRLVTMQIW 62
Query: 67 DVGGQEKLRPLWRHYFNNTDGLIYVVD--------SLDRERIGKAKQEF--QAIIKDPFM 116
D GQE+ + L ++ D + V D +LD R EF QA +DP
Sbjct: 63 DTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWR-----DEFLIQASPRDP-- 115
Query: 117 LNSVILVFANKQDMKG 132
N +V NK D +
Sbjct: 116 ENFPFVVLGNKIDFEN 131
>pdb|1K6M|A Chain A, Crystal Structure Of Human Liver
6-Phosphofructo-2-KinaseFRUCTOSE-2, 6-Bisphosphatase
pdb|1K6M|B Chain B, Crystal Structure Of Human Liver
6-Phosphofructo-2-KinaseFRUCTOSE-2, 6-Bisphosphatase
Length = 432
Score = 32.7 bits (73), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 46/100 (46%), Gaps = 15/100 (15%)
Query: 15 NSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNV-----EKVQYKNVIFTVWD-- 67
NS V+M+GL A GKT I KL PT FN+ E V YKN F + D
Sbjct: 1 NSPTMVIMVGLPARGKTYISTKLTRYLNFIGTPTKVFNLGQYRREAVSYKNYEFFLPDNM 60
Query: 68 ----VGGQEKLRPL--WRHYFNNTDGLIYVVDSLD--RER 99
+ Q L L +Y ++ +G + V D+ + RER
Sbjct: 61 EALQIRKQCALAALKDVHNYLSHEEGHVAVFDATNTTRER 100
>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum,
Pfb0500c
Length = 208
Score = 31.2 bits (69), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Query: 60 NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNS 119
N+ F +WD GQE+ + Y+ I V D + + +AK + N
Sbjct: 92 NIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQL---KISSNY 148
Query: 120 VILVFANKQD 129
+I++ ANK D
Sbjct: 149 IIILVANKID 158
>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DST|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSU|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSN|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
Length = 189
Score = 30.8 bits (68), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
Query: 14 GNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTV-PTIGFNVEK---VQYKNVIFTVWDVG 69
G++E ++V++G D GK+ + +L + PTI + K + + + + D
Sbjct: 1 GSTEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTA 60
Query: 70 GQEKLRPLWRHYFNNTDGLIYV 91
GQE+ + Y +G + V
Sbjct: 61 GQEEYSAMRDQYMRTGEGFLCV 82
>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive
(Gdp-3'p- Bound) Form
pdb|3E5H|A Chain A, Crystal Structure Of Rab28 Gtpase In The Active
(Gppnhp-Bound) Form
Length = 178
Score = 30.8 bits (68), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 6/83 (7%)
Query: 17 EMRVVMLGLDAAGKT---TILYKLHIGEVLSTVPTIGFNVEKVQYK---NVIFTVWDVGG 70
++++V+LG A+GKT T + G+ + F + ++ NV +WD+GG
Sbjct: 6 QLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGG 65
Query: 71 QEKLRPLWRHYFNNTDGLIYVVD 93
Q + Y G++ V D
Sbjct: 66 QTIGGKMLDKYIYGAQGVLLVYD 88
>pdb|1XZP|A Chain A, Structure Of The Gtp-Binding Protein Trme From Thermotoga
Maritima
pdb|1XZQ|A Chain A, Structure Of The Gtp-binding Protein Trme From Thermotoga
Maritima Complexed With 5-formyl-thf
Length = 482
Score = 30.4 bits (67), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 85/192 (44%), Gaps = 30/192 (15%)
Query: 15 NSEMRVVMLGLDAAGKTTILYKL--HIGEVLSTVPTIGFNV--EKVQYKNVIFTVWDVGG 70
N +R+V++G GK+T+L +L +++ +P +V E++ + ++F + D G
Sbjct: 241 NRGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAG 300
Query: 71 --------QEKL---RPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNS 119
E+L R L D +++V+D+ +E + I++ + N
Sbjct: 301 VRSETNDLVERLGIERTL--QEIEKADIVLFVLDA-----SSPLDEEDRKILE--RIKNK 351
Query: 120 VILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKE 179
LV NK D+ + E+ LG H+ ALKG+GL + + + +E
Sbjct: 352 RYLVVINKVDVVEKINEEEIKNKLGT------DRHMVKISALKGEGLEKLEESIYRETQE 405
Query: 180 MRAAGYSSVGTS 191
+ G S+ T+
Sbjct: 406 IFERGSDSLITN 417
>pdb|3L2O|B Chain B, Structure-Based Mechanism Of Dimerization-Dependent
Ubiquitination By The Scffbx4 Ubiquitin Ligase
Length = 312
Score = 30.0 bits (66), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 49/103 (47%), Gaps = 9/103 (8%)
Query: 86 DGLIYVVDSLDRERIGKAKQEFQAIIK--DPFMLNS----VILVFANKQDMKGAMTPMEV 139
DG IYV ++ +R + + EF I+ DP +S ++L ++ D+K M +
Sbjct: 212 DGFIYVANAEAHKR-HEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK-RMPCFYL 269
Query: 140 CEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEMRA 182
L L +L N W +Q T A G G++W+ ++ RA
Sbjct: 270 AHELHL-NLLNHPWLVQDTEAETLTGFLNGIEWILEEVESKRA 311
>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
Query: 14 GNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTV-PTIGFNVEK---VQYKNVIFTVWDVG 69
G +E ++V++G D GK+ + +L + PTI + K + + + + D
Sbjct: 1 GMTEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTA 60
Query: 70 GQEKLRPLWRHYFNNTDGLIYV 91
GQE+ + Y +G + V
Sbjct: 61 GQEEYSAMRDQYMRTGEGFLCV 82
>pdb|3BIF|A Chain A, 6-Phosphofructo-2-KinaseFRUCTOSE-2,6-Bisphosphatase
Empty 6-Pf-2k Active Site
Length = 468
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 21/43 (48%)
Query: 11 VFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNV 53
V N +VM+GL A GKT I KL VPT FNV
Sbjct: 32 VCMTNCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNV 74
>pdb|2BIF|A Chain A, 6-Phosphofructo-2-KinaseFRUCTOSE-2,6-Bisphosphatase
H256a Mutant With F6p In Phosphatase Active Site
pdb|2BIF|B Chain B, 6-Phosphofructo-2-KinaseFRUCTOSE-2,6-Bisphosphatase
H256a Mutant With F6p In Phosphatase Active Site
Length = 469
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 21/43 (48%)
Query: 11 VFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNV 53
V N +VM+GL A GKT I KL VPT FNV
Sbjct: 33 VCMTNCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNV 75
>pdb|1BIF|A Chain A, 6-Phosphofructo-2-KinaseFRUCTOSE-2,6-Bisphosphatase
Bifunctional Enzyme Complexed With Atp-G-S And
Phosphate
Length = 469
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 21/43 (48%)
Query: 11 VFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNV 53
V N +VM+GL A GKT I KL VPT FNV
Sbjct: 33 VCMTNCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNV 75
>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 206
Score = 28.5 bits (62), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 48/117 (41%), Gaps = 4/117 (3%)
Query: 19 RVVMLGLDAAGKTTILYKLHIGE-VLSTVPTIGFNVEK---VQYKNVIFTVWDVGGQEKL 74
+V+M+G GK+ + + E V PT + K + + V + D GQE
Sbjct: 16 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 75
Query: 75 RPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMK 131
+ +YF + +G + V + E + I++ N L+ NK D++
Sbjct: 76 AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 132
>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Y|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
Length = 168
Score = 28.5 bits (62), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/117 (21%), Positives = 48/117 (41%), Gaps = 4/117 (3%)
Query: 19 RVVMLGLDAAGKTTILYKLHIGEVLSTV-PTIGFNVEK---VQYKNVIFTVWDVGGQEKL 74
+V+M+G GK+ + + E + PT + K + + V + D GQE
Sbjct: 6 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 65
Query: 75 RPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMK 131
+ +YF + +G + V + E + I++ N L+ NK D++
Sbjct: 66 AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 122
>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|A Chain A, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
Length = 187
Score = 28.1 bits (61), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/117 (21%), Positives = 48/117 (41%), Gaps = 4/117 (3%)
Query: 19 RVVMLGLDAAGKTTILYKLHIGEVLSTV-PTIGFNVEK---VQYKNVIFTVWDVGGQEKL 74
+V+M+G GK+ + + E + PT + K + + V + D GQE
Sbjct: 20 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 79
Query: 75 RPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMK 131
+ +YF + +G + V + E + I++ N L+ NK D++
Sbjct: 80 AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 136
>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
pdb|1UAD|B Chain B, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
Length = 175
Score = 28.1 bits (61), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/117 (21%), Positives = 48/117 (41%), Gaps = 4/117 (3%)
Query: 19 RVVMLGLDAAGKTTILYKLHIGEVLSTV-PTIGFNVEK---VQYKNVIFTVWDVGGQEKL 74
+V+M+G GK+ + + E + PT + K + + V + D GQE
Sbjct: 8 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 67
Query: 75 RPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMK 131
+ +YF + +G + V + E + I++ N L+ NK D++
Sbjct: 68 AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 124
>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Gly-12 Mutant Of
P21-H-Ras
Length = 166
Score = 28.1 bits (61), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/80 (22%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
Query: 16 SEMRVVMLGLDAAGKTTILYKLHIGEVLSTV-PTIGFNVEK---VQYKNVIFTVWDVGGQ 71
+E ++V++G D GK+ + +L + PTI + K + + + + D GQ
Sbjct: 2 TEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQ 61
Query: 72 EKLRPLWRHYFNNTDGLIYV 91
E+ + Y +G + V
Sbjct: 62 EEYSAMRDQYMRTGEGFLCV 81
>pdb|2AXN|A Chain A, Crystal Structure Of The Human Inducible Form 6-
Phosphofructo-2-KinaseFRUCTOSE-2,6-Bisphosphatase
pdb|2DWO|A Chain A, Pfkfb3 In Complex With Adp And Pep
pdb|2DWP|A Chain A, A Pseudo Substrate Complex Of 6-Phosphofructo-2-Kinase
Of Pfkfb
pdb|2I1V|B Chain B, Crystal Structure Of Pfkfb3 In Complex With Adp And
Fructose-2,6-Bisphosphate
pdb|3QPU|A Chain A, Pfkfb3 In Complex With Ppi
pdb|3QPV|A Chain A, Pfkfb3 Trapped In A Phospho-Enzyme Intermediate State
pdb|3QPW|A Chain A, Pfkfb3 In Complex With Aluminum Tetrafluoride
Length = 520
Score = 27.7 bits (60), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 23/46 (50%), Gaps = 10/46 (21%)
Query: 13 FGNSEMRVVMLGLDAAGKTTILYKLH-----IGEVLSTVPTIGFNV 53
NS +VM+GL A GKT I KL IG VPT FNV
Sbjct: 31 LTNSPTVIVMVGLPARGKTYISKKLTRYLNWIG-----VPTKVFNV 71
>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 1)
pdb|3PIT|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 2)
Length = 183
Score = 27.3 bits (59), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 29/69 (42%)
Query: 62 IFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVI 121
I V D GQE+ + Y DG + V D+ + Q I++ + +
Sbjct: 67 ILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPM 126
Query: 122 LVFANKQDM 130
++ ANK D+
Sbjct: 127 ILVANKVDL 135
>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp
pdb|3KKQ|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gdp
Length = 183
Score = 27.3 bits (59), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 29/69 (42%)
Query: 62 IFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVI 121
I V D GQE+ + Y DG + V D+ + Q I++ + +
Sbjct: 67 ILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPM 126
Query: 122 LVFANKQDM 130
++ ANK D+
Sbjct: 127 ILVANKVDL 135
>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|B Chain B, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|P Chain P, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
Length = 183
Score = 27.3 bits (59), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 29/69 (42%)
Query: 62 IFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVI 121
I V D GQE+ + Y DG + V D+ + Q I++ + +
Sbjct: 67 ILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPM 126
Query: 122 LVFANKQDM 130
++ ANK D+
Sbjct: 127 ILVANKVDL 135
>pdb|2GJ9|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|C Chain C, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|D Chain D, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJA|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Nh4+
pdb|2GJA|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Nh4+
Length = 172
Score = 26.9 bits (58), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 67/180 (37%), Gaps = 32/180 (17%)
Query: 14 GNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNV-----EKVQYKNVIFTVWDV 68
G+ M+VV+ G AGK+++L L G + V I E + + + D
Sbjct: 1 GSHGMKVVIAGRPNAGKSSLLNAL-AGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDT 59
Query: 69 GGQEK---------LRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNS 119
G + + W+ D ++++VD + + A+ + I + P L
Sbjct: 60 AGLREASDEVERIGIERAWQE-IEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLP- 117
Query: 120 VILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKE 179
I V NK D+ G M G L L R EG+D L + LK+
Sbjct: 118 -ITVVRNKADITGETLGMSEVNGHALIRLSARTG--------------EGVDVLRNHLKQ 162
>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp
pdb|1X1S|A Chain A, Crystal Structure Of M-ras In Complex With Gppnhp
Length = 178
Score = 26.9 bits (58), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 29/69 (42%)
Query: 62 IFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVI 121
I V D GQE+ + Y DG + V D+ + Q I++ + +
Sbjct: 62 ILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPM 121
Query: 122 LVFANKQDM 130
++ ANK D+
Sbjct: 122 ILVANKVDL 130
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.139 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,691,703
Number of Sequences: 62578
Number of extensions: 233944
Number of successful extensions: 995
Number of sequences better than 100.0: 258
Number of HSP's better than 100.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 79
Number of HSP's that attempted gapping in prelim test: 703
Number of HSP's gapped (non-prelim): 303
length of query: 193
length of database: 14,973,337
effective HSP length: 93
effective length of query: 100
effective length of database: 9,153,583
effective search space: 915358300
effective search space used: 915358300
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)