Query 029446
Match_columns 193
No_of_seqs 124 out of 1755
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 13:03:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029446.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029446hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00223 ADP-ribosylation fact 100.0 2.6E-38 5.7E-43 222.9 21.7 180 1-180 1-180 (181)
2 PTZ00133 ADP-ribosylation fact 100.0 1.2E-37 2.7E-42 219.7 21.8 180 1-180 1-180 (182)
3 KOG0084 GTPase Rab1/YPT1, smal 100.0 4.9E-38 1.1E-42 214.1 13.8 168 14-186 6-180 (205)
4 smart00177 ARF ARF-like small 100.0 2E-36 4.3E-41 212.5 20.6 170 8-177 4-173 (175)
5 cd04149 Arf6 Arf6 subfamily. 100.0 5.5E-36 1.2E-40 208.9 19.2 162 14-175 6-167 (168)
6 KOG0094 GTPase Rab6/YPT6/Ryh1, 100.0 1.7E-36 3.7E-41 206.0 13.8 164 15-181 20-188 (221)
7 cd04150 Arf1_5_like Arf1-Arf5- 100.0 1.8E-35 4E-40 204.5 19.2 158 18-175 1-158 (159)
8 cd04153 Arl5_Arl8 Arl5/Arl8 su 100.0 6.6E-35 1.4E-39 204.6 20.4 172 4-175 2-173 (174)
9 KOG0092 GTPase Rab5/YPT51 and 100.0 2.2E-36 4.7E-41 205.3 12.3 163 15-183 3-172 (200)
10 KOG0098 GTPase Rab2, small G p 100.0 1.2E-35 2.7E-40 200.3 11.5 166 15-184 4-174 (216)
11 KOG0070 GTP-binding ADP-ribosy 100.0 1.5E-34 3.2E-39 195.8 15.9 179 1-179 1-179 (181)
12 cd04154 Arl2 Arl2 subfamily. 100.0 6.7E-34 1.5E-38 199.4 19.9 166 10-175 7-172 (173)
13 cd04121 Rab40 Rab40 subfamily. 100.0 1.4E-34 3E-39 204.7 16.2 161 15-182 4-171 (189)
14 cd04158 ARD1 ARD1 subfamily. 100.0 1.3E-33 2.9E-38 197.1 20.4 162 19-180 1-163 (169)
15 PF00025 Arf: ADP-ribosylation 100.0 1.5E-33 3.2E-38 197.7 20.5 171 7-177 3-175 (175)
16 cd04120 Rab12 Rab12 subfamily. 100.0 4.6E-34 1E-38 203.8 16.9 159 18-181 1-166 (202)
17 KOG0078 GTP-binding protein SE 100.0 1.5E-34 3.3E-39 199.7 13.4 167 13-183 8-179 (207)
18 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 2.6E-34 5.6E-39 201.2 14.2 161 17-181 2-167 (172)
19 smart00178 SAR Sar1p-like memb 100.0 5E-33 1.1E-37 196.7 20.4 173 4-176 3-183 (184)
20 cd04151 Arl1 Arl1 subfamily. 100.0 4.6E-33 1E-37 192.4 19.0 157 19-175 1-157 (158)
21 cd04126 Rab20 Rab20 subfamily. 100.0 8.8E-34 1.9E-38 204.5 15.5 163 18-181 1-193 (220)
22 KOG0073 GTP-binding ADP-ribosy 100.0 8.9E-33 1.9E-37 182.7 18.2 176 6-181 5-181 (185)
23 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 8.8E-34 1.9E-38 199.7 13.2 161 15-177 3-179 (182)
24 cd04157 Arl6 Arl6 subfamily. 100.0 1.3E-32 2.7E-37 190.7 18.7 157 19-175 1-161 (162)
25 cd01875 RhoG RhoG subfamily. 100.0 1.3E-33 2.8E-38 200.8 13.7 164 16-181 2-180 (191)
26 cd04133 Rop_like Rop subfamily 100.0 1.1E-33 2.3E-38 198.2 12.8 158 18-177 2-172 (176)
27 cd04122 Rab14 Rab14 subfamily. 100.0 3.4E-33 7.3E-38 194.5 15.3 157 17-179 2-165 (166)
28 KOG0080 GTPase Rab18, small G 100.0 3.7E-34 8E-39 188.7 9.7 164 15-181 9-177 (209)
29 PTZ00369 Ras-like protein; Pro 100.0 3.4E-33 7.3E-38 198.4 15.0 163 15-182 3-171 (189)
30 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 3.1E-33 6.8E-38 202.8 15.1 165 15-181 11-191 (232)
31 cd04127 Rab27A Rab27a subfamil 100.0 3.4E-33 7.3E-38 196.9 14.8 160 16-180 3-179 (180)
32 cd04152 Arl4_Arl7 Arl4/Arl7 su 100.0 4.3E-32 9.2E-37 191.8 20.3 167 16-182 2-174 (183)
33 cd04144 Ras2 Ras2 subfamily. 100.0 3.6E-33 7.8E-38 198.4 14.8 168 19-190 1-175 (190)
34 cd00878 Arf_Arl Arf (ADP-ribos 100.0 3.1E-32 6.8E-37 188.1 19.0 157 19-175 1-157 (158)
35 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 2.4E-32 5.3E-37 195.8 18.7 163 18-185 1-175 (201)
36 KOG0093 GTPase Rab3, small G p 100.0 1.7E-33 3.6E-38 183.0 11.1 165 15-183 19-188 (193)
37 cd00879 Sar1 Sar1 subfamily. 100.0 7.1E-32 1.5E-36 191.8 20.4 164 14-177 16-190 (190)
38 cd04162 Arl9_Arfrp2_like Arl9/ 100.0 3.6E-32 7.8E-37 188.9 18.3 154 20-175 2-163 (164)
39 cd04111 Rab39 Rab39 subfamily. 100.0 1.2E-32 2.7E-37 198.4 16.5 165 16-184 1-172 (211)
40 cd04161 Arl2l1_Arl13_like Arl2 100.0 6.2E-32 1.3E-36 188.3 19.1 157 19-175 1-166 (167)
41 cd04136 Rap_like Rap-like subf 100.0 6.9E-33 1.5E-37 192.2 14.2 157 17-177 1-162 (163)
42 cd04175 Rap1 Rap1 subgroup. T 100.0 1E-32 2.2E-37 191.7 14.7 157 17-177 1-162 (164)
43 cd01874 Cdc42 Cdc42 subfamily. 100.0 7E-33 1.5E-37 194.4 14.0 158 18-177 2-174 (175)
44 cd04131 Rnd Rnd subfamily. Th 100.0 4.1E-33 8.8E-38 195.9 12.5 160 17-178 1-176 (178)
45 cd04156 ARLTS1 ARLTS1 subfamil 100.0 7.1E-32 1.5E-36 186.7 18.6 157 19-175 1-159 (160)
46 KOG0394 Ras-related GTPase [Ge 100.0 4.8E-33 1E-37 187.5 11.9 166 13-181 5-181 (210)
47 PLN03071 GTP-binding nuclear p 100.0 4.9E-32 1.1E-36 196.3 17.3 158 15-180 11-174 (219)
48 cd01867 Rab8_Rab10_Rab13_like 100.0 2.4E-32 5.3E-37 190.4 15.2 158 16-179 2-166 (167)
49 cd04108 Rab36_Rab34 Rab34/Rab3 100.0 3E-32 6.6E-37 190.3 15.3 157 19-179 2-166 (170)
50 cd04128 Spg1 Spg1p. Spg1p (se 100.0 5.9E-32 1.3E-36 190.7 16.6 161 18-181 1-169 (182)
51 cd04155 Arl3 Arl3 subfamily. 100.0 2.7E-31 5.8E-36 186.1 19.9 163 13-175 10-172 (173)
52 cd01865 Rab3 Rab3 subfamily. 100.0 3E-32 6.5E-37 189.6 14.9 156 18-179 2-164 (165)
53 cd04119 RJL RJL (RabJ-Like) su 100.0 2.8E-32 6E-37 189.9 14.7 156 18-178 1-167 (168)
54 cd04117 Rab15 Rab15 subfamily. 100.0 3.7E-32 8E-37 188.4 14.6 154 18-176 1-160 (161)
55 cd04110 Rab35 Rab35 subfamily. 100.0 7E-32 1.5E-36 193.1 16.5 162 15-183 4-172 (199)
56 cd00877 Ran Ran (Ras-related n 100.0 1.8E-31 3.8E-36 185.9 18.0 155 18-179 1-160 (166)
57 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 100.0 4E-32 8.6E-37 196.1 15.0 164 17-181 1-179 (222)
58 cd04138 H_N_K_Ras_like H-Ras/N 100.0 1.2E-31 2.6E-36 185.6 16.8 156 17-177 1-161 (162)
59 smart00173 RAS Ras subfamily o 100.0 4.7E-32 1E-36 188.3 14.7 156 18-178 1-162 (164)
60 KOG0087 GTPase Rab11/YPT3, sma 100.0 1.9E-32 4.1E-37 188.7 12.1 166 13-182 10-180 (222)
61 cd04109 Rab28 Rab28 subfamily. 100.0 8.1E-32 1.8E-36 194.9 15.5 159 18-180 1-168 (215)
62 cd04145 M_R_Ras_like M-Ras/R-R 100.0 6E-32 1.3E-36 187.7 14.2 156 17-177 2-163 (164)
63 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 100.0 1E-31 2.2E-36 187.0 15.2 156 17-178 2-164 (166)
64 cd04134 Rho3 Rho3 subfamily. 100.0 5.2E-32 1.1E-36 192.3 13.5 162 19-182 2-178 (189)
65 KOG0091 GTPase Rab39, small G 100.0 2.2E-32 4.8E-37 180.8 10.7 167 15-184 6-179 (213)
66 cd04140 ARHI_like ARHI subfami 100.0 9.9E-32 2.1E-36 187.0 14.4 155 18-176 2-163 (165)
67 cd04176 Rap2 Rap2 subgroup. T 100.0 7.3E-32 1.6E-36 187.2 13.5 157 17-177 1-162 (163)
68 KOG0071 GTP-binding ADP-ribosy 100.0 5.6E-31 1.2E-35 169.9 16.5 178 1-178 1-178 (180)
69 cd04160 Arfrp1 Arfrp1 subfamil 100.0 9E-31 2E-35 182.4 18.6 157 19-175 1-166 (167)
70 cd04112 Rab26 Rab26 subfamily. 100.0 2E-31 4.3E-36 189.6 15.4 159 18-182 1-167 (191)
71 cd04125 RabA_like RabA-like su 100.0 2.7E-31 5.9E-36 188.5 15.9 162 18-184 1-168 (188)
72 cd01871 Rac1_like Rac1-like su 100.0 6.5E-32 1.4E-36 189.3 12.5 158 17-176 1-173 (174)
73 cd04159 Arl10_like Arl10-like 100.0 2E-30 4.3E-35 178.7 19.4 156 20-175 2-158 (159)
74 PLN03110 Rab GTPase; Provision 100.0 3.3E-31 7.2E-36 191.7 16.1 163 14-181 9-177 (216)
75 cd01868 Rab11_like Rab11-like. 100.0 2.4E-31 5.2E-36 185.0 14.8 156 16-177 2-164 (165)
76 KOG0086 GTPase Rab4, small G p 100.0 2.3E-31 5.1E-36 174.3 13.3 167 15-185 7-178 (214)
77 cd01866 Rab2 Rab2 subfamily. 100.0 3.9E-31 8.5E-36 184.5 15.4 158 16-179 3-167 (168)
78 cd04106 Rab23_lke Rab23-like s 100.0 1.9E-31 4.2E-36 184.8 13.2 152 18-176 1-161 (162)
79 cd04124 RabL2 RabL2 subfamily. 100.0 1.7E-30 3.6E-35 180.1 17.5 155 18-180 1-160 (161)
80 cd01864 Rab19 Rab19 subfamily. 100.0 1.8E-30 3.9E-35 180.6 17.8 155 16-176 2-164 (165)
81 cd04103 Centaurin_gamma Centau 100.0 4E-31 8.8E-36 182.4 13.8 153 18-176 1-157 (158)
82 KOG0079 GTP-binding protein H- 100.0 3.3E-32 7.1E-37 177.2 7.7 159 18-181 9-172 (198)
83 cd04132 Rho4_like Rho4-like su 100.0 2.4E-30 5.2E-35 183.5 17.8 159 18-183 1-172 (187)
84 KOG0095 GTPase Rab30, small G 100.0 1.5E-31 3.2E-36 174.6 10.2 160 16-180 6-171 (213)
85 cd04115 Rab33B_Rab33A Rab33B/R 100.0 5.3E-31 1.1E-35 184.2 13.8 157 17-177 2-168 (170)
86 cd04113 Rab4 Rab4 subfamily. 100.0 6.5E-31 1.4E-35 182.1 14.0 154 18-177 1-161 (161)
87 smart00176 RAN Ran (Ras-relate 100.0 2.1E-30 4.6E-35 184.7 16.6 151 23-180 1-156 (200)
88 cd04118 Rab24 Rab24 subfamily. 100.0 1.9E-30 4.2E-35 184.8 16.5 162 18-181 1-169 (193)
89 PLN03118 Rab family protein; P 100.0 1.8E-30 3.8E-35 187.5 16.3 163 15-181 12-180 (211)
90 cd04177 RSR1 RSR1 subgroup. R 100.0 8.7E-31 1.9E-35 182.7 14.1 158 17-178 1-164 (168)
91 smart00175 RAB Rab subfamily o 100.0 1.3E-30 2.8E-35 180.9 14.7 157 18-179 1-163 (164)
92 PF00071 Ras: Ras family; Int 100.0 4.9E-31 1.1E-35 182.8 12.4 154 19-178 1-161 (162)
93 cd04116 Rab9 Rab9 subfamily. 100.0 3.9E-30 8.4E-35 179.7 17.0 158 15-176 3-169 (170)
94 PLN03108 Rab family protein; P 100.0 3E-30 6.5E-35 186.0 16.1 161 15-181 4-171 (210)
95 KOG0075 GTP-binding ADP-ribosy 100.0 1.7E-30 3.6E-35 169.0 13.1 166 15-180 18-184 (186)
96 cd01861 Rab6 Rab6 subfamily. 100.0 2E-30 4.4E-35 179.5 14.4 154 18-176 1-160 (161)
97 cd01860 Rab5_related Rab5-rela 100.0 2.4E-30 5.2E-35 179.5 14.8 155 17-177 1-162 (163)
98 cd01892 Miro2 Miro2 subfamily. 100.0 1.2E-29 2.7E-34 177.0 17.8 154 15-178 2-166 (169)
99 cd01863 Rab18 Rab18 subfamily. 100.0 1E-29 2.2E-34 176.0 17.2 154 18-176 1-160 (161)
100 cd04142 RRP22 RRP22 subfamily. 100.0 4.5E-30 9.8E-35 183.2 15.4 162 18-182 1-178 (198)
101 cd04143 Rhes_like Rhes_like su 100.0 1.6E-29 3.4E-34 185.7 18.5 156 18-177 1-170 (247)
102 cd04101 RabL4 RabL4 (Rab-like4 100.0 3.5E-30 7.6E-35 178.9 14.3 154 18-177 1-163 (164)
103 cd01873 RhoBTB RhoBTB subfamil 100.0 1.3E-30 2.7E-35 185.5 11.9 156 17-176 2-194 (195)
104 smart00174 RHO Rho (Ras homolo 100.0 2.7E-30 5.8E-35 181.2 12.8 157 20-178 1-172 (174)
105 cd04139 RalA_RalB RalA/RalB su 100.0 7.4E-30 1.6E-34 177.0 14.7 157 18-179 1-163 (164)
106 cd01862 Rab7 Rab7 subfamily. 100.0 5.1E-29 1.1E-33 174.2 18.0 159 18-181 1-170 (172)
107 cd04135 Tc10 TC10 subfamily. 100.0 7.9E-30 1.7E-34 178.8 13.5 159 18-177 1-173 (174)
108 KOG0081 GTPase Rab27, small G 100.0 7.9E-32 1.7E-36 177.5 3.1 165 16-183 8-186 (219)
109 cd04148 RGK RGK subfamily. Th 100.0 1.9E-29 4.2E-34 182.9 15.7 158 18-181 1-166 (221)
110 cd04146 RERG_RasL11_like RERG/ 100.0 6.2E-30 1.3E-34 177.9 11.6 155 19-178 1-164 (165)
111 cd04123 Rab21 Rab21 subfamily. 100.0 2.5E-29 5.5E-34 173.9 14.6 154 18-177 1-161 (162)
112 cd04130 Wrch_1 Wrch-1 subfamil 100.0 1.1E-29 2.3E-34 178.1 12.6 156 18-175 1-171 (173)
113 cd01893 Miro1 Miro1 subfamily. 100.0 3.9E-29 8.4E-34 174.1 14.7 158 18-179 1-165 (166)
114 cd04137 RheB Rheb (Ras Homolog 100.0 7.3E-29 1.6E-33 174.8 15.3 162 18-184 2-169 (180)
115 KOG0072 GTP-binding ADP-ribosy 100.0 1.5E-29 3.3E-34 164.0 10.2 180 1-180 1-181 (182)
116 cd04147 Ras_dva Ras-dva subfam 100.0 1.8E-28 3.8E-33 175.4 16.8 156 19-178 1-163 (198)
117 KOG0088 GTPase Rab21, small G 100.0 3.4E-30 7.3E-35 169.7 6.7 166 13-182 9-179 (218)
118 cd01870 RhoA_like RhoA-like su 100.0 2.6E-28 5.5E-33 171.3 15.8 159 17-177 1-174 (175)
119 cd04114 Rab30 Rab30 subfamily. 100.0 2.1E-28 4.5E-33 170.8 15.0 158 15-177 5-168 (169)
120 cd00154 Rab Rab family. Rab G 100.0 7.5E-28 1.6E-32 165.7 16.8 151 18-174 1-158 (159)
121 cd00876 Ras Ras family. The R 100.0 2.9E-28 6.3E-33 168.3 13.6 154 19-177 1-160 (160)
122 KOG0076 GTP-binding ADP-ribosy 100.0 6E-29 1.3E-33 166.2 9.3 181 1-181 1-190 (197)
123 cd00157 Rho Rho (Ras homology) 100.0 2.7E-28 5.8E-33 170.4 13.0 157 18-175 1-170 (171)
124 PTZ00132 GTP-binding nuclear p 100.0 5.1E-27 1.1E-31 169.9 18.9 163 11-180 3-170 (215)
125 cd04129 Rho2 Rho2 subfamily. 100.0 1.8E-27 3.9E-32 168.7 15.8 163 17-181 1-176 (187)
126 KOG0395 Ras-related GTPase [Ge 100.0 7.7E-28 1.7E-32 170.4 12.8 163 16-181 2-168 (196)
127 KOG0097 GTPase Rab14, small G 100.0 1.1E-27 2.3E-32 155.3 10.5 164 15-183 9-178 (215)
128 KOG0083 GTPase Rab26/Rab37, sm 100.0 1.6E-29 3.4E-34 162.2 1.2 157 22-188 2-169 (192)
129 cd04102 RabL3 RabL3 (Rab-like3 99.9 9.6E-27 2.1E-31 165.9 15.3 146 18-164 1-176 (202)
130 cd01897 NOG NOG1 is a nucleola 99.9 2.5E-26 5.4E-31 160.1 15.7 153 18-177 1-167 (168)
131 cd01898 Obg Obg subfamily. Th 99.9 5.4E-26 1.2E-30 158.6 14.8 155 19-176 2-169 (170)
132 cd04171 SelB SelB subfamily. 99.9 5.9E-26 1.3E-30 157.4 13.7 149 18-175 1-163 (164)
133 KOG4252 GTP-binding protein [S 99.9 2.5E-28 5.5E-33 164.1 1.2 163 16-183 19-186 (246)
134 PRK03003 GTP-binding protein D 99.9 1.2E-25 2.5E-30 179.5 16.1 166 16-193 37-227 (472)
135 KOG0074 GTP-binding ADP-ribosy 99.9 7.6E-26 1.7E-30 146.5 11.8 165 13-177 13-178 (185)
136 cd01878 HflX HflX subfamily. 99.9 2.7E-25 5.9E-30 159.6 15.7 154 14-177 38-204 (204)
137 PRK12299 obgE GTPase CgtA; Rev 99.9 2.4E-25 5.1E-30 169.6 15.8 160 18-181 159-331 (335)
138 cd01890 LepA LepA subfamily. 99.9 2.6E-25 5.6E-30 156.5 14.9 149 19-177 2-176 (179)
139 KOG0393 Ras-related small GTPa 99.9 2.7E-26 5.9E-31 159.4 8.9 165 15-181 2-182 (198)
140 cd01887 IF2_eIF5B IF2/eIF5B (i 99.9 8.2E-25 1.8E-29 152.3 15.3 154 19-178 2-166 (168)
141 PLN00023 GTP-binding protein; 99.9 3.9E-24 8.5E-29 159.8 18.7 122 12-133 16-166 (334)
142 PRK04213 GTP-binding protein; 99.9 9.8E-26 2.1E-30 161.6 9.6 163 13-181 5-195 (201)
143 TIGR03156 GTP_HflX GTP-binding 99.9 3.1E-24 6.7E-29 164.7 16.8 151 15-176 187-350 (351)
144 TIGR00231 small_GTP small GTP- 99.9 7E-24 1.5E-28 145.6 17.1 153 17-174 1-160 (161)
145 TIGR02528 EutP ethanolamine ut 99.9 3.6E-25 7.9E-30 150.2 10.3 133 19-174 2-141 (142)
146 PRK03003 GTP-binding protein D 99.9 4.5E-24 9.7E-29 170.4 18.0 161 16-181 210-385 (472)
147 PRK15494 era GTPase Era; Provi 99.9 2.6E-24 5.6E-29 164.8 15.9 156 15-179 50-217 (339)
148 cd00881 GTP_translation_factor 99.9 7.2E-24 1.6E-28 150.2 17.1 155 19-178 1-187 (189)
149 PF02421 FeoB_N: Ferrous iron 99.9 2.4E-24 5.3E-29 146.1 13.1 141 18-173 1-156 (156)
150 TIGR02729 Obg_CgtA Obg family 99.9 5.6E-24 1.2E-28 162.0 16.3 156 18-177 158-328 (329)
151 cd04164 trmE TrmE (MnmE, ThdF, 99.9 1.4E-23 3.1E-28 144.3 16.4 143 18-177 2-156 (157)
152 TIGR00436 era GTP-binding prot 99.9 5.6E-24 1.2E-28 158.8 15.4 152 19-179 2-165 (270)
153 COG1160 Predicted GTPases [Gen 99.9 1.5E-24 3.3E-29 166.1 12.2 164 18-193 4-194 (444)
154 cd01881 Obg_like The Obg-like 99.9 3.8E-24 8.3E-29 150.0 12.9 152 22-176 1-175 (176)
155 TIGR03594 GTPase_EngA ribosome 99.9 5.1E-24 1.1E-28 168.9 14.7 163 19-193 1-188 (429)
156 PTZ00099 rab6; Provisional 99.9 3.8E-24 8.3E-29 149.8 12.3 132 44-181 8-145 (176)
157 cd01889 SelB_euk SelB subfamil 99.9 1.2E-23 2.6E-28 149.8 14.1 156 18-178 1-186 (192)
158 cd01894 EngA1 EngA1 subfamily. 99.9 2.2E-23 4.8E-28 143.4 14.9 145 21-177 1-157 (157)
159 PRK09518 bifunctional cytidyla 99.9 1.2E-23 2.7E-28 175.0 15.9 169 13-193 271-466 (712)
160 PRK00093 GTP-binding protein D 99.9 8.1E-24 1.8E-28 168.0 14.2 163 18-193 2-189 (435)
161 cd01891 TypA_BipA TypA (tyrosi 99.9 2E-23 4.4E-28 148.8 14.8 145 19-168 4-172 (194)
162 cd01879 FeoB Ferrous iron tran 99.9 1.7E-23 3.6E-28 144.3 13.5 145 22-177 1-156 (158)
163 cd00882 Ras_like_GTPase Ras-li 99.9 1.1E-23 2.4E-28 143.4 12.5 148 22-174 1-156 (157)
164 COG1100 GTPase SAR1 and relate 99.9 2.2E-23 4.7E-28 151.3 14.5 166 16-181 4-188 (219)
165 TIGR00450 mnmE_trmE_thdF tRNA 99.9 7E-23 1.5E-27 161.4 18.3 151 15-181 201-363 (442)
166 TIGR03594 GTPase_EngA ribosome 99.9 4.9E-23 1.1E-27 163.3 17.2 160 16-180 171-346 (429)
167 PRK12296 obgE GTPase CgtA; Rev 99.9 3.2E-23 6.9E-28 163.6 15.7 160 17-181 159-343 (500)
168 PRK05291 trmE tRNA modificatio 99.9 5.3E-23 1.1E-27 162.8 16.7 146 16-179 214-371 (449)
169 cd04105 SR_beta Signal recogni 99.9 7.6E-23 1.6E-27 146.6 15.9 157 19-175 2-202 (203)
170 PRK11058 GTPase HflX; Provisio 99.9 1.5E-22 3.3E-27 158.7 18.3 154 18-180 198-364 (426)
171 PRK12297 obgE GTPase CgtA; Rev 99.9 2.3E-22 5E-27 156.9 18.2 155 19-181 160-330 (424)
172 cd01895 EngA2 EngA2 subfamily. 99.9 4E-22 8.8E-27 139.1 17.8 155 17-176 2-173 (174)
173 PRK00454 engB GTP-binding prot 99.9 8E-23 1.7E-27 145.9 13.6 163 11-179 18-195 (196)
174 PRK15467 ethanolamine utilizat 99.9 2E-22 4.3E-27 139.0 13.3 145 19-182 3-151 (158)
175 cd01888 eIF2_gamma eIF2-gamma 99.9 1.2E-22 2.7E-27 145.6 11.9 158 18-178 1-199 (203)
176 PF08477 Miro: Miro-like prote 99.9 6.2E-23 1.4E-27 135.1 8.7 109 19-129 1-119 (119)
177 TIGR00487 IF-2 translation ini 99.9 1.2E-21 2.6E-26 158.8 17.4 157 14-176 84-248 (587)
178 cd04163 Era Era subfamily. Er 99.9 1.2E-21 2.7E-26 135.7 15.1 153 16-176 2-167 (168)
179 cd00880 Era_like Era (E. coli 99.9 1.1E-21 2.3E-26 134.9 14.6 150 22-176 1-162 (163)
180 PF00009 GTP_EFTU: Elongation 99.9 2.4E-22 5.2E-27 142.6 11.6 157 16-178 2-187 (188)
181 TIGR03598 GTPase_YsxC ribosome 99.9 2.2E-22 4.8E-27 141.7 11.2 149 10-167 11-179 (179)
182 PRK00089 era GTPase Era; Revie 99.9 8.8E-22 1.9E-26 148.7 15.2 156 16-179 4-172 (292)
183 TIGR01393 lepA GTP-binding pro 99.9 1.4E-21 3E-26 159.0 17.0 152 19-180 5-182 (595)
184 PRK09518 bifunctional cytidyla 99.9 1.8E-21 3.9E-26 162.1 17.8 159 16-179 449-622 (712)
185 PRK00093 GTP-binding protein D 99.9 2.4E-21 5.2E-26 153.8 17.5 160 15-179 171-345 (435)
186 COG2229 Predicted GTPase [Gene 99.9 3.2E-21 7E-26 130.9 14.9 157 13-176 6-176 (187)
187 PRK12298 obgE GTPase CgtA; Rev 99.9 2.3E-21 5.1E-26 150.4 16.1 160 19-180 161-335 (390)
188 COG1159 Era GTPase [General fu 99.9 5.6E-22 1.2E-26 144.7 11.8 158 15-180 4-174 (298)
189 PRK05306 infB translation init 99.9 4.2E-21 9.1E-26 159.2 18.0 154 14-176 287-450 (787)
190 KOG1673 Ras GTPases [General f 99.9 1.2E-22 2.6E-27 133.7 6.9 167 11-179 14-187 (205)
191 TIGR00475 selB selenocysteine- 99.9 1.2E-21 2.5E-26 159.4 13.4 154 18-180 1-168 (581)
192 CHL00189 infB translation init 99.9 7.2E-21 1.6E-25 156.6 16.7 158 14-177 241-409 (742)
193 cd01896 DRG The developmentall 99.9 1.5E-20 3.3E-25 137.2 16.1 149 19-177 2-225 (233)
194 PRK12317 elongation factor 1-a 99.9 6.5E-21 1.4E-25 150.7 14.1 155 14-170 3-197 (425)
195 PRK05433 GTP-binding protein L 99.9 3E-20 6.6E-25 151.4 17.4 155 16-180 6-186 (600)
196 KOG3883 Ras family small GTPas 99.9 3.1E-20 6.8E-25 122.1 13.5 165 15-182 7-179 (198)
197 TIGR00483 EF-1_alpha translati 99.9 5.9E-21 1.3E-25 151.0 12.3 153 14-169 4-198 (426)
198 TIGR00437 feoB ferrous iron tr 99.9 1.2E-20 2.6E-25 153.6 13.3 139 24-177 1-154 (591)
199 PRK09554 feoB ferrous iron tra 99.8 3.3E-20 7.1E-25 154.5 15.7 151 16-177 2-167 (772)
200 KOG0096 GTPase Ran/TC4/GSP1 (n 99.8 6E-21 1.3E-25 129.7 9.2 157 16-179 9-170 (216)
201 cd04168 TetM_like Tet(M)-like 99.8 8.3E-20 1.8E-24 133.5 15.9 155 19-178 1-235 (237)
202 TIGR00491 aIF-2 translation in 99.8 6E-20 1.3E-24 148.8 15.9 155 16-178 3-216 (590)
203 TIGR03680 eif2g_arch translati 99.8 3E-20 6.5E-25 145.9 13.2 161 15-178 2-196 (406)
204 TIGR01394 TypA_BipA GTP-bindin 99.8 5.5E-20 1.2E-24 149.5 14.9 157 19-180 3-193 (594)
205 cd04166 CysN_ATPS CysN_ATPS su 99.8 3.6E-20 7.7E-25 133.4 12.1 147 19-169 1-185 (208)
206 COG0218 Predicted GTPase [Gene 99.8 7.7E-20 1.7E-24 126.8 13.1 164 9-179 16-198 (200)
207 PRK10218 GTP-binding protein; 99.8 1.4E-19 3.1E-24 147.0 16.2 160 16-180 4-197 (607)
208 COG0486 ThdF Predicted GTPase 99.8 1.5E-19 3.3E-24 139.2 14.9 151 16-180 216-378 (454)
209 PRK04000 translation initiatio 99.8 1.1E-19 2.4E-24 142.6 13.6 160 14-179 6-202 (411)
210 PRK04004 translation initiatio 99.8 3.9E-19 8.4E-24 144.5 17.1 155 15-177 4-217 (586)
211 COG1160 Predicted GTPases [Gen 99.8 2.5E-19 5.5E-24 137.6 15.0 159 16-179 177-352 (444)
212 cd01883 EF1_alpha Eukaryotic e 99.8 5.5E-20 1.2E-24 133.3 10.4 146 19-167 1-194 (219)
213 cd01884 EF_Tu EF-Tu subfamily. 99.8 1.8E-19 3.9E-24 128.0 12.4 145 17-166 2-171 (195)
214 KOG1489 Predicted GTP-binding 99.8 2.1E-19 4.6E-24 131.7 12.6 152 18-176 197-365 (366)
215 cd01876 YihA_EngB The YihA (En 99.8 2.9E-19 6.2E-24 124.1 12.7 153 19-177 1-170 (170)
216 PRK10512 selenocysteinyl-tRNA- 99.8 1.6E-19 3.5E-24 147.4 13.0 154 18-179 1-167 (614)
217 COG2262 HflX GTPases [General 99.8 1.2E-18 2.6E-23 132.1 16.1 162 10-181 185-359 (411)
218 cd04165 GTPBP1_like GTPBP1-lik 99.8 4E-19 8.7E-24 128.8 12.9 152 19-175 1-220 (224)
219 cd04169 RF3 RF3 subfamily. Pe 99.8 2.6E-18 5.7E-23 127.6 16.4 110 19-133 4-138 (267)
220 KOG0077 Vesicle coat complex C 99.8 1.5E-19 3.3E-24 120.4 8.7 163 15-177 18-192 (193)
221 COG0370 FeoB Fe2+ transport sy 99.8 2.2E-18 4.7E-23 138.1 15.2 151 16-181 2-167 (653)
222 PRK12735 elongation factor Tu; 99.8 2.7E-18 5.8E-23 134.5 14.5 166 6-178 3-203 (396)
223 cd04170 EF-G_bact Elongation f 99.8 5.2E-18 1.1E-22 126.6 15.3 109 19-132 1-130 (268)
224 KOG1423 Ras-like GTPase ERA [C 99.8 1.7E-18 3.6E-23 126.5 12.2 159 14-178 69-271 (379)
225 cd01886 EF-G Elongation factor 99.8 8.5E-18 1.8E-22 125.0 16.0 109 19-132 1-130 (270)
226 PRK12736 elongation factor Tu; 99.8 2.5E-18 5.5E-23 134.5 13.0 160 14-178 9-201 (394)
227 COG1084 Predicted GTPase [Gene 99.8 8.7E-18 1.9E-22 124.1 14.0 156 16-178 167-336 (346)
228 cd04104 p47_IIGP_like p47 (47- 99.8 2.3E-18 4.9E-23 123.0 10.6 159 17-182 1-188 (197)
229 CHL00071 tufA elongation facto 99.8 4.4E-18 9.6E-23 133.8 13.0 153 6-165 3-180 (409)
230 TIGR00485 EF-Tu translation el 99.8 4.4E-18 9.6E-23 133.3 13.0 152 6-164 3-179 (394)
231 PRK13351 elongation factor G; 99.8 1.1E-17 2.4E-22 139.4 15.9 116 13-133 4-140 (687)
232 cd04167 Snu114p Snu114p subfam 99.8 4.3E-18 9.2E-23 123.0 11.1 108 19-131 2-136 (213)
233 COG1163 DRG Predicted GTPase [ 99.8 2.7E-17 5.8E-22 121.2 13.9 156 15-181 61-292 (365)
234 PRK00741 prfC peptide chain re 99.8 3.4E-17 7.4E-22 131.7 15.8 114 15-133 8-146 (526)
235 cd01885 EF2 EF2 (for archaea a 99.8 2E-17 4.4E-22 119.5 13.2 108 19-131 2-138 (222)
236 PF04670 Gtr1_RagA: Gtr1/RagA 99.8 9.8E-18 2.1E-22 121.2 10.9 159 19-182 1-180 (232)
237 PRK00049 elongation factor Tu; 99.8 1.8E-17 4E-22 129.7 13.1 159 14-177 9-202 (396)
238 KOG0090 Signal recognition par 99.8 3.7E-17 8E-22 113.7 13.0 165 12-177 33-238 (238)
239 PF09439 SRPRB: Signal recogni 99.7 9.4E-18 2E-22 116.4 9.5 123 16-139 2-133 (181)
240 KOG4423 GTP-binding protein-li 99.7 7.9E-20 1.7E-24 124.0 -1.4 161 17-181 25-197 (229)
241 PF10662 PduV-EutP: Ethanolami 99.7 3.5E-17 7.6E-22 108.9 11.1 135 19-174 3-142 (143)
242 PLN03126 Elongation factor Tu; 99.7 9.7E-17 2.1E-21 127.6 15.5 147 14-165 78-249 (478)
243 COG0536 Obg Predicted GTPase [ 99.7 3.5E-17 7.7E-22 121.4 11.9 160 19-181 161-336 (369)
244 PRK05124 cysN sulfate adenylyl 99.7 2.8E-17 6.1E-22 131.0 11.9 153 13-169 23-216 (474)
245 TIGR00484 EF-G translation elo 99.7 2.3E-16 5.1E-21 131.4 17.6 115 14-133 7-142 (689)
246 PRK05506 bifunctional sulfate 99.7 4.5E-17 9.8E-22 134.5 12.9 160 5-168 12-211 (632)
247 TIGR02034 CysN sulfate adenyly 99.7 4.8E-17 1E-21 127.8 12.3 147 18-168 1-187 (406)
248 PTZ00141 elongation factor 1- 99.7 5.8E-17 1.3E-21 128.4 12.5 152 14-168 4-203 (446)
249 PLN00043 elongation factor 1-a 99.7 6E-17 1.3E-21 128.2 12.3 150 15-168 5-203 (447)
250 TIGR00503 prfC peptide chain r 99.7 4.9E-16 1.1E-20 125.1 16.9 112 15-132 9-146 (527)
251 PLN03127 Elongation factor Tu; 99.7 2.2E-16 4.9E-21 124.9 14.4 160 14-178 58-252 (447)
252 cd01899 Ygr210 Ygr210 subfamil 99.7 4.3E-16 9.4E-21 118.0 15.2 154 20-179 1-270 (318)
253 KOG1707 Predicted Ras related/ 99.7 2.2E-17 4.8E-22 129.6 8.0 160 14-179 6-176 (625)
254 KOG0462 Elongation factor-type 99.7 2.2E-16 4.7E-21 123.3 13.1 160 15-181 58-238 (650)
255 PF01926 MMR_HSR1: 50S ribosom 99.7 8.8E-16 1.9E-20 100.5 14.1 103 19-127 1-116 (116)
256 PTZ00327 eukaryotic translatio 99.7 1.2E-16 2.7E-21 126.3 11.5 163 13-179 30-234 (460)
257 cd01852 AIG1 AIG1 (avrRpt2-ind 99.7 7.1E-16 1.5E-20 110.1 13.5 163 18-182 1-188 (196)
258 KOG1145 Mitochondrial translat 99.7 8.6E-16 1.9E-20 120.1 14.9 156 13-177 149-315 (683)
259 COG0532 InfB Translation initi 99.7 4.8E-16 1E-20 121.6 13.3 155 15-179 3-171 (509)
260 KOG1191 Mitochondrial GTPase [ 99.7 1.6E-15 3.5E-20 117.3 14.8 167 16-182 267-454 (531)
261 PRK12739 elongation factor G; 99.7 2.4E-15 5.2E-20 125.4 15.9 115 14-133 5-140 (691)
262 cd00066 G-alpha G protein alph 99.7 1.8E-15 4E-20 115.1 13.9 135 47-181 147-314 (317)
263 COG0481 LepA Membrane GTPase L 99.7 9.9E-16 2.1E-20 118.0 11.9 154 18-181 10-189 (603)
264 smart00275 G_alpha G protein a 99.7 3E-15 6.5E-20 114.9 13.8 134 48-181 171-337 (342)
265 PRK12740 elongation factor G; 99.7 4.4E-15 9.5E-20 123.7 15.9 106 23-133 1-127 (668)
266 COG3596 Predicted GTPase [Gene 99.7 4.3E-16 9.3E-21 112.7 8.5 164 14-180 36-224 (296)
267 PRK09602 translation-associate 99.7 6.2E-15 1.4E-19 114.9 14.8 78 18-95 2-113 (396)
268 PRK00007 elongation factor G; 99.6 7.7E-15 1.7E-19 122.3 15.6 115 14-133 7-142 (693)
269 cd01850 CDC_Septin CDC/Septin. 99.6 9.8E-16 2.1E-20 114.4 9.2 140 15-161 2-185 (276)
270 COG5256 TEF1 Translation elong 99.6 3.9E-15 8.5E-20 113.2 10.6 152 15-168 5-201 (428)
271 TIGR00157 ribosome small subun 99.6 4.3E-16 9.3E-21 114.5 4.4 111 72-193 24-136 (245)
272 PRK13768 GTPase; Provisional 99.6 8.7E-15 1.9E-19 108.1 9.7 117 61-178 97-247 (253)
273 PRK09435 membrane ATPase/prote 99.6 6E-14 1.3E-18 106.6 14.4 157 14-182 53-264 (332)
274 PRK09866 hypothetical protein; 99.6 8.7E-14 1.9E-18 111.9 15.9 113 61-176 230-351 (741)
275 KOG1490 GTP-binding protein CR 99.6 4.1E-15 8.9E-20 115.2 6.4 165 15-181 166-344 (620)
276 PF03308 ArgK: ArgK protein; 99.6 2.4E-14 5.3E-19 103.5 9.8 166 3-182 17-234 (266)
277 PF03029 ATP_bind_1: Conserved 99.6 1.3E-14 2.8E-19 106.0 7.2 112 62-177 92-236 (238)
278 TIGR00490 aEF-2 translation el 99.5 7.4E-14 1.6E-18 116.9 11.8 113 15-132 17-152 (720)
279 COG1217 TypA Predicted membran 99.5 6.8E-14 1.5E-18 107.8 10.2 158 19-181 7-198 (603)
280 COG2895 CysN GTPases - Sulfate 99.5 8.9E-14 1.9E-18 103.8 10.4 149 15-167 4-192 (431)
281 KOG0082 G-protein alpha subuni 99.5 1.5E-13 3.3E-18 104.0 11.4 136 46-181 180-347 (354)
282 PRK14845 translation initiatio 99.5 3E-13 6.6E-18 115.3 14.1 143 28-178 472-673 (1049)
283 TIGR00991 3a0901s02IAP34 GTP-b 99.5 1.1E-12 2.4E-17 98.1 14.6 118 14-133 35-168 (313)
284 KOG1532 GTPase XAB1, interacts 99.5 1.2E-13 2.6E-18 100.0 8.8 166 13-181 15-267 (366)
285 COG1703 ArgK Putative periplas 99.5 1.5E-12 3.2E-17 95.7 13.9 167 4-184 40-260 (323)
286 cd01882 BMS1 Bms1. Bms1 is an 99.5 3.6E-13 7.8E-18 98.0 10.9 141 15-164 37-182 (225)
287 cd01853 Toc34_like Toc34-like 99.5 1.8E-12 4E-17 95.3 14.4 120 13-134 27-165 (249)
288 COG4917 EutP Ethanolamine util 99.5 1.6E-13 3.5E-18 87.7 7.4 138 19-176 3-144 (148)
289 PF04548 AIG1: AIG1 family; I 99.5 2.3E-13 5E-18 98.2 9.1 162 18-181 1-189 (212)
290 KOG0461 Selenocysteine-specifi 99.5 6.6E-13 1.4E-17 99.1 10.4 160 15-179 5-194 (522)
291 TIGR00101 ureG urease accessor 99.5 2.2E-12 4.8E-17 92.0 12.4 104 60-178 91-196 (199)
292 PTZ00258 GTP-binding protein; 99.4 4.2E-12 9.1E-17 98.4 13.8 81 15-95 19-126 (390)
293 COG3276 SelB Selenocysteine-sp 99.4 2.1E-12 4.5E-17 99.3 11.6 155 19-178 2-162 (447)
294 PLN00116 translation elongatio 99.4 2.6E-12 5.7E-17 109.2 12.1 121 4-131 8-163 (843)
295 KOG3905 Dynein light intermedi 99.4 2.6E-12 5.6E-17 95.2 10.4 162 17-182 52-294 (473)
296 PRK12289 GTPase RsgA; Reviewed 99.4 3.3E-13 7.1E-18 103.7 5.9 105 78-193 83-188 (352)
297 TIGR00750 lao LAO/AO transport 99.4 1.3E-11 2.8E-16 93.6 14.2 107 60-178 126-238 (300)
298 cd01855 YqeH YqeH. YqeH is an 99.4 4.8E-13 1E-17 95.0 5.1 113 74-193 24-143 (190)
299 KOG0458 Elongation factor 1 al 99.4 1.5E-12 3.3E-17 102.8 8.3 154 13-169 173-373 (603)
300 smart00010 small_GTPase Small 99.4 2E-12 4.3E-17 85.3 7.2 113 18-167 1-115 (124)
301 PTZ00416 elongation factor 2; 99.4 1.1E-11 2.4E-16 105.3 13.1 112 15-131 17-157 (836)
302 KOG0410 Predicted GTP binding 99.4 3E-12 6.5E-17 94.8 8.2 153 14-181 175-344 (410)
303 KOG1144 Translation initiation 99.4 4.5E-12 9.7E-17 102.6 9.3 159 16-182 474-691 (1064)
304 PF05049 IIGP: Interferon-indu 99.4 1.2E-12 2.5E-17 100.5 5.8 159 15-182 33-222 (376)
305 TIGR00073 hypB hydrogenase acc 99.3 1.2E-11 2.7E-16 88.9 10.3 152 11-177 16-206 (207)
306 COG5257 GCD11 Translation init 99.3 2.5E-12 5.4E-17 95.1 6.3 162 15-181 8-205 (415)
307 PRK07560 elongation factor EF- 99.3 1.6E-11 3.4E-16 103.3 11.9 113 15-132 18-153 (731)
308 PF00350 Dynamin_N: Dynamin fa 99.3 2.6E-11 5.7E-16 84.3 11.0 64 61-128 101-168 (168)
309 cd01859 MJ1464 MJ1464. This f 99.3 5E-12 1.1E-16 87.0 7.1 110 74-193 2-117 (156)
310 PRK12288 GTPase RsgA; Reviewed 99.3 4.1E-12 8.9E-17 97.6 6.8 104 82-193 118-221 (347)
311 KOG3886 GTP-binding protein [S 99.3 3.4E-12 7.5E-17 90.3 5.6 145 17-163 4-164 (295)
312 COG4108 PrfC Peptide chain rel 99.3 2.9E-11 6.4E-16 92.9 11.0 110 17-131 12-146 (528)
313 PRK09601 GTP-binding protein Y 99.3 4.7E-11 1E-15 91.6 11.8 78 18-95 3-107 (364)
314 PF00735 Septin: Septin; Inte 99.3 3E-11 6.5E-16 90.4 9.3 115 16-136 3-160 (281)
315 PF05783 DLIC: Dynein light in 99.3 5.3E-11 1.1E-15 94.4 11.0 160 17-182 25-268 (472)
316 PRK00098 GTPase RsgA; Reviewed 99.3 3.3E-12 7.1E-17 96.7 3.8 102 81-193 77-180 (298)
317 cd01854 YjeQ_engC YjeQ/EngC. 99.3 6.3E-12 1.4E-16 94.6 5.1 104 79-193 73-177 (287)
318 TIGR02836 spore_IV_A stage IV 99.3 2.9E-10 6.2E-15 87.7 13.8 139 15-162 15-219 (492)
319 PRK10463 hydrogenase nickel in 99.3 4.4E-12 9.5E-17 94.3 3.8 55 119-176 231-287 (290)
320 KOG3887 Predicted small GTPase 99.2 8.8E-11 1.9E-15 83.9 9.7 163 17-181 27-205 (347)
321 KOG1707 Predicted Ras related/ 99.2 3.1E-10 6.7E-15 90.0 13.6 154 12-178 420-583 (625)
322 TIGR03597 GTPase_YqeH ribosome 99.2 5.6E-12 1.2E-16 97.7 3.6 115 71-193 50-170 (360)
323 KOG1486 GTP-binding protein DR 99.2 2.5E-10 5.4E-15 82.1 11.6 156 15-181 60-291 (364)
324 cd01858 NGP_1 NGP-1. Autoanti 99.2 4.7E-11 1E-15 82.2 7.1 106 81-193 5-118 (157)
325 COG0480 FusA Translation elong 99.2 4.8E-10 1.1E-14 92.7 12.8 114 15-133 8-143 (697)
326 smart00053 DYNc Dynamin, GTPas 99.2 1.2E-09 2.5E-14 79.8 12.5 69 61-133 125-207 (240)
327 KOG1954 Endocytosis/signaling 99.2 7.4E-10 1.6E-14 83.7 11.5 123 15-144 56-234 (532)
328 COG0012 Predicted GTPase, prob 99.1 1.7E-09 3.6E-14 82.3 13.0 80 17-96 2-109 (372)
329 TIGR00993 3a0901s04IAP86 chlor 99.1 1E-09 2.2E-14 89.2 12.3 116 16-133 117-251 (763)
330 cd01856 YlqF YlqF. Proteins o 99.1 6.6E-11 1.4E-15 82.7 4.7 109 73-193 8-131 (171)
331 cd01849 YlqF_related_GTPase Yl 99.1 1.5E-10 3.2E-15 79.6 6.3 99 86-193 1-116 (155)
332 TIGR03596 GTPase_YlqF ribosome 99.1 9.4E-11 2E-15 87.9 5.6 108 74-193 11-134 (276)
333 KOG0085 G protein subunit Galp 99.1 5E-11 1.1E-15 84.7 3.7 135 47-181 185-352 (359)
334 COG0378 HypB Ni2+-binding GTPa 99.1 1.8E-10 3.9E-15 79.9 5.5 145 17-177 13-200 (202)
335 cd01900 YchF YchF subfamily. 99.1 4.4E-10 9.6E-15 83.6 7.7 76 20-95 1-103 (274)
336 cd04178 Nucleostemin_like Nucl 99.1 7.3E-10 1.6E-14 77.2 7.3 55 15-70 115-171 (172)
337 COG0050 TufB GTPases - transla 99.0 2.7E-09 5.8E-14 78.5 9.9 140 15-162 10-177 (394)
338 COG5258 GTPBP1 GTPase [General 99.0 3.7E-09 8E-14 80.4 10.4 162 14-181 114-341 (527)
339 PRK13796 GTPase YqeH; Provisio 99.0 2.4E-10 5.2E-15 88.8 4.3 112 73-193 58-176 (365)
340 cd01857 HSR1_MMR1 HSR1/MMR1. 99.0 4.1E-10 8.9E-15 76.1 4.8 94 79-193 6-99 (141)
341 COG5019 CDC3 Septin family pro 99.0 3.9E-09 8.5E-14 79.9 9.7 119 13-136 19-180 (373)
342 KOG0468 U5 snRNP-specific prot 99.0 2.5E-09 5.4E-14 86.2 8.8 112 15-131 126-262 (971)
343 cd01858 NGP_1 NGP-1. Autoanti 99.0 2.4E-09 5.2E-14 73.7 7.8 56 15-70 100-156 (157)
344 KOG2655 Septin family protein 99.0 3.9E-09 8.6E-14 80.3 9.4 120 12-136 16-176 (366)
345 KOG1487 GTP-binding protein DR 99.0 3E-09 6.5E-14 76.9 7.6 155 17-181 59-284 (358)
346 PRK09563 rbgA GTPase YlqF; Rev 99.0 8.1E-10 1.8E-14 83.3 4.6 107 75-193 15-137 (287)
347 PF00503 G-alpha: G-protein al 98.9 2.9E-09 6.2E-14 83.8 6.7 131 47-177 221-389 (389)
348 KOG1143 Predicted translation 98.9 7.3E-09 1.6E-13 78.6 7.8 155 13-172 163-382 (591)
349 KOG0705 GTPase-activating prot 98.9 3.6E-09 7.8E-14 83.6 6.1 155 16-182 29-193 (749)
350 cd01857 HSR1_MMR1 HSR1/MMR1. 98.9 7.8E-09 1.7E-13 69.9 6.5 52 19-71 85-138 (141)
351 KOG0448 Mitofusin 1 GTPase, in 98.8 7.4E-08 1.6E-12 78.1 12.3 145 13-162 105-310 (749)
352 KOG2486 Predicted GTPase [Gene 98.8 5.8E-09 1.3E-13 76.1 5.5 158 13-175 132-313 (320)
353 COG1161 Predicted GTPases [Gen 98.8 1.3E-08 2.7E-13 77.9 7.0 56 15-70 130-186 (322)
354 cd01859 MJ1464 MJ1464. This f 98.8 1.9E-08 4.2E-13 69.1 7.0 56 15-70 99-155 (156)
355 COG1162 Predicted GTPases [Gen 98.8 4.7E-09 1E-13 78.1 3.7 104 82-193 77-180 (301)
356 cd01856 YlqF YlqF. Proteins o 98.8 2.2E-08 4.8E-13 69.9 6.5 56 15-71 113-170 (171)
357 PRK09563 rbgA GTPase YlqF; Rev 98.8 2.4E-08 5.3E-13 75.4 7.2 56 15-71 119-176 (287)
358 TIGR03596 GTPase_YlqF ribosome 98.8 2.4E-08 5.1E-13 75.0 6.7 56 15-71 116-173 (276)
359 TIGR00092 GTP-binding protein 98.7 9E-08 1.9E-12 73.8 9.5 78 18-95 3-108 (368)
360 KOG1547 Septin CDC10 and relat 98.7 3.8E-08 8.3E-13 70.5 6.9 116 14-135 43-201 (336)
361 PRK01889 GTPase RsgA; Reviewed 98.7 2.8E-08 6.1E-13 77.1 6.4 102 82-193 110-211 (356)
362 cd01855 YqeH YqeH. YqeH is an 98.7 3E-08 6.6E-13 70.4 6.0 54 16-70 126-189 (190)
363 cd01851 GBP Guanylate-binding 98.6 1.1E-06 2.3E-11 64.1 12.3 84 15-98 5-105 (224)
364 cd01849 YlqF_related_GTPase Yl 98.6 1.3E-07 2.8E-12 64.9 7.0 53 15-70 98-154 (155)
365 KOG0467 Translation elongation 98.6 2E-07 4.4E-12 76.4 8.8 107 15-129 7-135 (887)
366 KOG0447 Dynamin-like GTP bindi 98.6 1.2E-06 2.5E-11 70.0 12.1 81 61-144 412-507 (980)
367 KOG1491 Predicted GTP-binding 98.6 2.9E-07 6.4E-12 69.2 8.2 82 15-96 18-126 (391)
368 COG5192 BMS1 GTP-binding prote 98.6 3.7E-07 8.1E-12 73.0 9.0 111 16-134 68-179 (1077)
369 TIGR03348 VI_IcmF type VI secr 98.6 9E-07 1.9E-11 78.4 12.3 111 19-132 113-257 (1169)
370 KOG0465 Mitochondrial elongati 98.6 1.3E-07 2.9E-12 75.8 6.5 111 16-131 38-169 (721)
371 KOG0463 GTP-binding protein GP 98.5 2.6E-07 5.7E-12 70.5 6.8 152 17-173 133-353 (641)
372 PRK14974 cell division protein 98.5 1.9E-06 4.1E-11 66.2 10.8 139 16-171 139-323 (336)
373 KOG0466 Translation initiation 98.5 8.3E-08 1.8E-12 71.2 2.7 160 13-180 34-243 (466)
374 KOG0459 Polypeptide release fa 98.4 3.2E-07 7E-12 70.4 5.0 158 14-171 76-279 (501)
375 TIGR01425 SRP54_euk signal rec 98.4 4.3E-06 9.4E-11 66.0 11.5 111 16-133 99-254 (429)
376 PRK10416 signal recognition pa 98.4 5.4E-06 1.2E-10 63.4 11.8 139 16-171 113-303 (318)
377 KOG0460 Mitochondrial translat 98.4 6.5E-07 1.4E-11 67.4 6.5 142 16-161 53-218 (449)
378 cd03112 CobW_like The function 98.4 1.9E-06 4.1E-11 59.4 8.1 22 19-40 2-23 (158)
379 cd04178 Nucleostemin_like Nucl 98.4 1.2E-07 2.7E-12 66.1 2.2 105 86-193 1-133 (172)
380 TIGR00157 ribosome small subun 98.4 5.6E-07 1.2E-11 66.4 5.7 64 3-73 109-183 (245)
381 PRK12289 GTPase RsgA; Reviewed 98.4 7.1E-07 1.5E-11 69.0 6.5 37 4-43 162-198 (352)
382 PRK12288 GTPase RsgA; Reviewed 98.4 9.4E-07 2E-11 68.3 6.8 54 19-75 207-271 (347)
383 KOG0099 G protein subunit Galp 98.4 2.5E-06 5.4E-11 62.2 8.4 134 48-181 189-372 (379)
384 KOG1534 Putative transcription 98.4 1.3E-06 2.8E-11 61.7 6.6 115 60-178 97-251 (273)
385 KOG0464 Elongation factor G [T 98.4 9.3E-08 2E-12 73.7 0.9 125 16-145 36-184 (753)
386 TIGR03597 GTPase_YqeH ribosome 98.4 1.1E-06 2.5E-11 68.4 6.4 55 18-73 155-216 (360)
387 TIGR00064 ftsY signal recognit 98.3 3.6E-05 7.7E-10 57.7 13.8 139 16-171 71-261 (272)
388 PF03193 DUF258: Protein of un 98.3 1.3E-06 2.8E-11 59.9 5.4 35 4-41 25-59 (161)
389 KOG3859 Septins (P-loop GTPase 98.3 2.3E-06 5E-11 62.9 6.2 119 11-134 36-192 (406)
390 PF09547 Spore_IV_A: Stage IV 98.2 3.6E-05 7.9E-10 60.1 12.1 155 15-178 15-234 (492)
391 PRK13796 GTPase YqeH; Provisio 98.2 1.9E-06 4.2E-11 67.2 5.2 54 17-71 160-220 (365)
392 COG1618 Predicted nucleotide k 98.2 0.00011 2.4E-09 50.0 12.7 26 15-40 3-28 (179)
393 COG1161 Predicted GTPases [Gen 98.2 1.2E-06 2.7E-11 67.1 3.7 116 67-193 16-148 (322)
394 KOG1424 Predicted GTP-binding 98.2 1.7E-06 3.8E-11 68.3 4.4 53 17-70 314-368 (562)
395 PF00448 SRP54: SRP54-type pro 98.2 2.8E-05 6E-10 55.5 10.1 133 18-168 2-181 (196)
396 cd03114 ArgK-like The function 98.2 2.9E-05 6.3E-10 52.8 9.1 58 60-129 91-148 (148)
397 cd01854 YjeQ_engC YjeQ/EngC. 98.2 6.7E-06 1.5E-10 62.2 6.5 56 18-74 162-226 (287)
398 PRK00098 GTPase RsgA; Reviewed 98.1 7.9E-06 1.7E-10 62.1 6.7 37 4-43 154-190 (298)
399 PRK14721 flhF flagellar biosyn 98.1 8.1E-05 1.8E-09 58.9 12.0 132 17-166 191-365 (420)
400 PRK00771 signal recognition pa 98.1 8.4E-05 1.8E-09 59.2 12.0 111 15-133 93-247 (437)
401 PRK14722 flhF flagellar biosyn 98.1 4.3E-05 9.4E-10 59.5 10.1 118 16-133 136-296 (374)
402 COG3523 IcmF Type VI protein s 98.1 5.1E-05 1.1E-09 66.5 10.9 110 20-132 128-270 (1188)
403 cd03115 SRP The signal recogni 98.1 0.00013 2.8E-09 50.9 11.1 67 60-133 82-154 (173)
404 PRK11889 flhF flagellar biosyn 98.1 4.7E-05 1E-09 59.4 9.5 136 16-168 240-418 (436)
405 COG0523 Putative GTPases (G3E 98.1 0.00016 3.4E-09 55.4 12.2 132 20-160 4-184 (323)
406 PRK10867 signal recognition pa 98.0 0.00015 3.2E-09 57.8 12.1 78 60-144 183-267 (433)
407 KOG2484 GTPase [General functi 98.0 3.7E-06 8E-11 64.6 3.0 55 15-70 250-306 (435)
408 PRK11537 putative GTP-binding 98.0 5.7E-05 1.2E-09 57.9 9.1 66 61-133 91-165 (318)
409 PRK14723 flhF flagellar biosyn 98.0 0.00011 2.5E-09 61.9 11.3 137 19-170 187-367 (767)
410 KOG2423 Nucleolar GTPase [Gene 98.0 4.5E-06 9.8E-11 64.2 2.8 59 12-70 302-361 (572)
411 KOG2484 GTPase [General functi 98.0 1.4E-05 3E-10 61.5 5.3 76 66-144 128-203 (435)
412 PF02492 cobW: CobW/HypB/UreG, 98.0 2.8E-05 6.1E-10 54.6 6.6 110 19-134 2-157 (178)
413 PF06858 NOG1: Nucleolar GTP-b 98.0 3.3E-05 7E-10 43.0 5.2 45 83-129 12-58 (58)
414 TIGR00959 ffh signal recogniti 98.0 0.00012 2.7E-09 58.1 10.4 78 60-144 182-266 (428)
415 cd01983 Fer4_NifH The Fer4_Nif 97.9 0.00011 2.4E-09 45.7 8.4 97 20-126 2-99 (99)
416 COG1162 Predicted GTPases [Gen 97.9 3.6E-05 7.8E-10 57.7 6.2 22 19-40 166-187 (301)
417 PRK05703 flhF flagellar biosyn 97.9 0.00026 5.6E-09 56.4 11.3 135 19-170 223-401 (424)
418 PRK12726 flagellar biosynthesi 97.9 0.00019 4.1E-09 55.9 10.0 136 16-168 205-383 (407)
419 PRK06731 flhF flagellar biosyn 97.9 0.00019 4.2E-09 53.6 9.3 133 17-167 75-251 (270)
420 KOG2485 Conserved ATP/GTP bind 97.8 2.9E-05 6.2E-10 58.1 4.8 57 14-70 140-205 (335)
421 PRK12727 flagellar biosynthesi 97.8 0.00014 3.1E-09 58.8 8.9 111 16-133 349-499 (559)
422 COG0552 FtsY Signal recognitio 97.8 0.00012 2.5E-09 55.6 7.7 141 14-171 136-328 (340)
423 TIGR02475 CobW cobalamin biosy 97.8 0.00013 2.9E-09 56.4 8.4 23 18-40 5-27 (341)
424 COG1419 FlhF Flagellar GTP-bin 97.8 0.00014 3E-09 56.7 8.1 109 17-133 203-353 (407)
425 PRK06995 flhF flagellar biosyn 97.8 0.00014 3E-09 58.5 8.3 136 18-170 257-435 (484)
426 PF05621 TniB: Bacterial TniB 97.8 0.00028 6.1E-09 53.1 8.9 115 5-128 49-190 (302)
427 PRK13695 putative NTPase; Prov 97.7 0.00026 5.7E-09 49.5 8.2 22 18-39 1-22 (174)
428 cd02042 ParA ParA and ParB of 97.7 0.00038 8.3E-09 44.2 8.0 81 20-108 2-84 (104)
429 cd02038 FleN-like FleN is a me 97.7 0.0011 2.4E-08 44.6 9.9 105 22-131 5-110 (139)
430 cd00009 AAA The AAA+ (ATPases 97.7 0.0015 3.2E-08 43.5 10.7 37 6-42 8-44 (151)
431 PF13401 AAA_22: AAA domain; P 97.6 6.9E-05 1.5E-09 49.6 3.9 25 18-42 5-29 (131)
432 COG0541 Ffh Signal recognition 97.6 0.00045 9.8E-09 54.2 8.5 112 14-132 97-253 (451)
433 KOG0780 Signal recognition par 97.6 0.00027 5.8E-09 54.6 6.7 111 14-131 98-253 (483)
434 PRK12723 flagellar biosynthesi 97.6 0.0054 1.2E-07 48.3 13.9 133 17-166 174-351 (388)
435 KOG2423 Nucleolar GTPase [Gene 97.6 0.00043 9.3E-09 53.7 7.5 112 75-193 201-323 (572)
436 PRK10751 molybdopterin-guanine 97.6 0.00033 7.1E-09 48.8 6.3 65 16-90 5-69 (173)
437 PF13207 AAA_17: AAA domain; P 97.5 8E-05 1.7E-09 48.7 3.0 22 19-40 1-22 (121)
438 cd03111 CpaE_like This protein 97.5 0.00095 2.1E-08 42.7 7.9 100 23-127 6-106 (106)
439 PRK12724 flagellar biosynthesi 97.5 0.00046 9.9E-09 54.5 7.3 110 17-133 223-374 (432)
440 PF05729 NACHT: NACHT domain 97.5 0.0011 2.3E-08 45.5 8.2 24 20-43 3-26 (166)
441 COG0563 Adk Adenylate kinase a 97.5 9.8E-05 2.1E-09 51.8 2.9 23 18-40 1-23 (178)
442 KOG0469 Elongation factor 2 [T 97.5 0.0011 2.4E-08 53.0 8.9 109 18-131 20-163 (842)
443 PRK08118 topology modulation p 97.5 0.00011 2.3E-09 51.2 2.9 22 19-40 3-24 (167)
444 cd03222 ABC_RNaseL_inhibitor T 97.4 0.003 6.4E-08 44.3 10.1 26 17-42 25-50 (177)
445 PRK07261 topology modulation p 97.4 0.00012 2.6E-09 51.1 3.0 23 18-40 1-23 (171)
446 cd03116 MobB Molybdenum is an 97.4 0.00028 6.1E-09 48.6 4.7 51 19-75 3-53 (159)
447 COG3640 CooC CO dehydrogenase 97.4 0.0012 2.6E-08 47.8 7.8 64 61-131 134-198 (255)
448 PF13671 AAA_33: AAA domain; P 97.4 0.00015 3.2E-09 48.8 2.9 20 20-39 2-21 (143)
449 PF13555 AAA_29: P-loop contai 97.4 0.00019 4.1E-09 40.9 2.9 21 19-39 25-45 (62)
450 KOG1533 Predicted GTPase [Gene 97.4 0.00071 1.5E-08 48.9 6.3 70 60-133 96-178 (290)
451 PRK06851 hypothetical protein; 97.3 0.00093 2E-08 52.0 6.8 68 3-70 16-91 (367)
452 PF13521 AAA_28: AAA domain; P 97.3 0.00016 3.5E-09 49.9 2.2 22 19-40 1-22 (163)
453 cd02019 NK Nucleoside/nucleoti 97.3 0.00026 5.7E-09 41.5 2.8 21 20-40 2-22 (69)
454 PF00005 ABC_tran: ABC transpo 97.3 0.00028 6.1E-09 47.1 3.2 26 18-43 12-37 (137)
455 PRK05439 pantothenate kinase; 97.3 0.0004 8.7E-09 52.9 4.2 35 5-39 74-108 (311)
456 PRK01889 GTPase RsgA; Reviewed 97.2 0.00049 1.1E-08 53.7 4.6 25 18-42 196-220 (356)
457 TIGR00554 panK_bact pantothena 97.2 0.00046 1E-08 52.1 4.2 27 13-39 58-84 (290)
458 cd02036 MinD Bacterial cell di 97.2 0.014 3.1E-07 40.6 11.3 66 62-133 64-129 (179)
459 COG1763 MobB Molybdopterin-gua 97.2 0.00096 2.1E-08 45.9 4.9 52 19-76 4-55 (161)
460 COG1116 TauB ABC-type nitrate/ 97.2 0.00036 7.7E-09 50.9 2.9 23 19-41 31-53 (248)
461 PF03205 MobB: Molybdopterin g 97.1 0.00048 1E-08 46.4 3.0 23 19-41 2-24 (140)
462 KOG2485 Conserved ATP/GTP bind 97.1 0.00046 9.9E-09 51.8 3.1 120 63-193 24-159 (335)
463 PRK05480 uridine/cytidine kina 97.1 0.00054 1.2E-08 49.4 3.4 26 15-40 4-29 (209)
464 PRK03839 putative kinase; Prov 97.1 0.00047 1E-08 48.4 3.0 23 18-40 1-23 (180)
465 COG1136 SalX ABC-type antimicr 97.1 0.00046 1E-08 50.0 2.9 25 19-43 33-57 (226)
466 PRK06217 hypothetical protein; 97.1 0.00047 1E-08 48.6 3.0 23 18-40 2-24 (183)
467 PF00004 AAA: ATPase family as 97.1 0.00048 1E-08 45.4 2.8 22 20-41 1-22 (132)
468 PF13191 AAA_16: AAA ATPase do 97.1 0.00065 1.4E-08 47.6 3.5 28 12-39 19-46 (185)
469 TIGR00235 udk uridine kinase. 97.1 0.00058 1.3E-08 49.1 3.2 25 15-39 4-28 (207)
470 PF13238 AAA_18: AAA domain; P 97.0 0.00056 1.2E-08 44.9 2.9 21 20-40 1-21 (129)
471 PF04665 Pox_A32: Poxvirus A32 97.0 0.00046 9.9E-09 50.6 2.6 29 13-41 9-37 (241)
472 KOG0781 Signal recognition par 97.0 0.0044 9.6E-08 49.3 8.1 128 5-133 366-545 (587)
473 PRK09270 nucleoside triphospha 97.0 0.00096 2.1E-08 48.8 4.3 29 14-42 30-58 (229)
474 PF03266 NTPase_1: NTPase; In 97.0 0.00058 1.3E-08 47.5 2.9 22 19-40 1-22 (168)
475 PRK08233 hypothetical protein; 97.0 0.0007 1.5E-08 47.4 3.4 24 17-40 3-26 (182)
476 PRK10078 ribose 1,5-bisphospho 97.0 0.00064 1.4E-08 48.1 3.1 22 19-40 4-25 (186)
477 PHA00729 NTP-binding motif con 97.0 0.0012 2.6E-08 47.9 4.5 35 6-40 6-40 (226)
478 TIGR02322 phosphon_PhnN phosph 97.0 0.00061 1.3E-08 47.8 2.8 22 19-40 3-24 (179)
479 smart00382 AAA ATPases associa 97.0 0.00077 1.7E-08 44.6 3.1 27 18-44 3-29 (148)
480 cd00071 GMPK Guanosine monopho 97.0 0.00074 1.6E-08 45.3 2.9 21 20-40 2-22 (137)
481 PF00437 T2SE: Type II/IV secr 97.0 0.00077 1.7E-08 50.6 3.2 26 16-41 126-151 (270)
482 KOG3347 Predicted nucleotide k 97.0 0.00067 1.5E-08 45.6 2.5 25 15-39 5-29 (176)
483 cd02023 UMPK Uridine monophosp 97.0 0.00066 1.4E-08 48.5 2.7 21 20-40 2-22 (198)
484 PRK04195 replication factor C 96.9 0.0081 1.8E-07 49.0 9.2 25 17-41 39-63 (482)
485 KOG2743 Cobalamin synthesis pr 96.9 0.025 5.4E-07 42.7 10.8 29 14-42 54-82 (391)
486 COG3840 ThiQ ABC-type thiamine 96.9 0.001 2.2E-08 46.4 3.3 26 18-43 26-51 (231)
487 PF07728 AAA_5: AAA domain (dy 96.9 0.00083 1.8E-08 45.0 2.9 22 19-40 1-22 (139)
488 PRK14530 adenylate kinase; Pro 96.9 0.00078 1.7E-08 48.8 2.9 22 18-39 4-25 (215)
489 COG1126 GlnQ ABC-type polar am 96.9 0.00094 2E-08 47.8 3.1 24 19-42 30-53 (240)
490 cd01130 VirB11-like_ATPase Typ 96.9 0.0015 3.2E-08 46.2 4.2 26 16-41 24-49 (186)
491 PRK13949 shikimate kinase; Pro 96.9 0.00085 1.8E-08 46.7 2.9 22 19-40 3-24 (169)
492 cd00820 PEPCK_HprK Phosphoenol 96.9 0.00092 2E-08 42.7 2.7 21 18-38 16-36 (107)
493 cd02025 PanK Pantothenate kina 96.9 0.00074 1.6E-08 49.1 2.6 21 20-40 2-22 (220)
494 PRK14495 putative molybdopteri 96.9 0.002 4.4E-08 51.0 5.1 51 19-75 3-53 (452)
495 TIGR01360 aden_kin_iso1 adenyl 96.9 0.001 2.3E-08 46.8 3.3 22 17-38 3-24 (188)
496 PRK00411 cdc6 cell division co 96.9 0.0096 2.1E-07 47.1 9.0 27 14-40 52-78 (394)
497 cd03255 ABC_MJ0796_Lo1CDE_FtsE 96.9 0.001 2.2E-08 48.2 3.2 24 19-42 32-55 (218)
498 PRK06547 hypothetical protein; 96.9 0.0018 3.9E-08 45.2 4.3 27 14-40 12-38 (172)
499 TIGR03263 guanyl_kin guanylate 96.9 0.00095 2.1E-08 46.8 2.9 23 19-41 3-25 (180)
500 PRK14738 gmk guanylate kinase; 96.9 0.0012 2.7E-08 47.5 3.5 26 15-40 11-36 (206)
No 1
>PLN00223 ADP-ribosylation factor; Provisional
Probab=100.00 E-value=2.6e-38 Score=222.89 Aligned_cols=180 Identities=58% Similarity=1.083 Sum_probs=159.0
Q ss_pred CchhHHHHhhhhcCCCccEEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEEEEEcCEEEEEEecCCCCCCHHhHHh
Q 029446 1 MGQAFRKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRH 80 (193)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~ 80 (193)
||..++.+++++...+.+||+++|.++||||||++++..+.+..+.||.+.++..+....+.+.+||+||+++++..+..
T Consensus 1 m~~~~~~~~~~~~~~~~~ki~ivG~~~~GKTsl~~~l~~~~~~~~~pt~g~~~~~~~~~~~~~~i~D~~Gq~~~~~~~~~ 80 (181)
T PLN00223 1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRH 80 (181)
T ss_pred CchHHHHHHHHhcCCCccEEEEECCCCCCHHHHHHHHccCCCccccCCcceeEEEEEECCEEEEEEECCCCHHHHHHHHH
Confidence 78778788777766788999999999999999999999888877789999988888888999999999999999999999
Q ss_pred hhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEecc
Q 029446 81 YFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCA 160 (193)
Q Consensus 81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (193)
+++++|++|+|+|++++.++++...++..++......+.|+++|+||+|+.+....+++.+.++........+.+++|||
T Consensus 81 ~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~l~l~~~~~~~~~~~~~Sa 160 (181)
T PLN00223 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCA 160 (181)
T ss_pred HhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCceEEEeccC
Confidence 99999999999999999999999988888876544467999999999999887777888888887666566677889999
Q ss_pred ccCCCHHHHHHHHHHHHHhh
Q 029446 161 LKGDGLYEGLDWLASTLKEM 180 (193)
Q Consensus 161 ~~~~gi~~~~~~l~~~~~~~ 180 (193)
++|+|++++|++|.+.+..+
T Consensus 161 ~~g~gv~e~~~~l~~~~~~~ 180 (181)
T PLN00223 161 TSGEGLYEGLDWLSNNIANK 180 (181)
T ss_pred CCCCCHHHHHHHHHHHHhhc
Confidence 99999999999999887543
No 2
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=100.00 E-value=1.2e-37 Score=219.73 Aligned_cols=180 Identities=59% Similarity=1.073 Sum_probs=159.3
Q ss_pred CchhHHHHhhhhcCCCccEEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEEEEEcCEEEEEEecCCCCCCHHhHHh
Q 029446 1 MGQAFRKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRH 80 (193)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~ 80 (193)
||+++..+++.....+.+||+++|++|+|||||++++..+.+..+.||.+.++..+....+.+.+||+||+++++..+..
T Consensus 1 ~~~~~~~~~~~~~~~~~~kv~lvG~~~vGKTsli~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~ 80 (182)
T PTZ00133 1 MGLWLSSAFKSLFGKKEVRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNLKFTMWDVGGQDKLRPLWRH 80 (182)
T ss_pred CchHHHHHHHHhcCCCccEEEEEcCCCCCHHHHHHHHhcCCccccCCccccceEEEEECCEEEEEEECCCCHhHHHHHHH
Confidence 78888889998877888999999999999999999998888877778999888888888899999999999999999999
Q ss_pred hhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEecc
Q 029446 81 YFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCA 160 (193)
Q Consensus 81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (193)
+++++|++|+|+|++++.+++....++..++......+.|+++|+||.|+.+....+++...++...++...+.++++||
T Consensus 81 ~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa 160 (182)
T PTZ00133 81 YYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMSTTEVTEKLGLHSVRQRNWYIQGCCA 160 (182)
T ss_pred HhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCHHHHHHHhCCCcccCCcEEEEeeeC
Confidence 99999999999999999999999988888876544457899999999999876666778788877666666778889999
Q ss_pred ccCCCHHHHHHHHHHHHHhh
Q 029446 161 LKGDGLYEGLDWLASTLKEM 180 (193)
Q Consensus 161 ~~~~gi~~~~~~l~~~~~~~ 180 (193)
++|.|+++++++|.+.+.+.
T Consensus 161 ~tg~gv~e~~~~l~~~i~~~ 180 (182)
T PTZ00133 161 TTAQGLYEGLDWLSANIKKS 180 (182)
T ss_pred CCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999887654
No 3
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.9e-38 Score=214.10 Aligned_cols=168 Identities=22% Similarity=0.331 Sum_probs=141.1
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEEE----EEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEE
Q 029446 14 GNSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVEK----VQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGL 88 (193)
Q Consensus 14 ~~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~----~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 88 (193)
-++.|||+|+|+.|+|||+|+.||..+.+. .+..|+|+++.. +..+.++++||||+||++|+++..+++++++++
T Consensus 6 ~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGi 85 (205)
T KOG0084|consen 6 YDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 85 (205)
T ss_pred cceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeE
Confidence 367899999999999999999999999998 578999988764 333678999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH-hHHHhhhCCCcCCCCceE-EEEeccccCCCH
Q 029446 89 IYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP-MEVCEGLGLFDLKNRKWH-IQGTCALKGDGL 166 (193)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi 166 (193)
|+|||+++.+||.++..|+.++.+. ...+.|.++|+||+|+.+.... .+..+.+ +...+++ ++++||+++.|+
T Consensus 86 i~vyDiT~~~SF~~v~~Wi~Ei~~~-~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~f----a~~~~~~~f~ETSAK~~~NV 160 (205)
T KOG0084|consen 86 IFVYDITKQESFNNVKRWIQEIDRY-ASENVPKLLVGNKCDLTEKRVVSTEEAQEF----ADELGIPIFLETSAKDSTNV 160 (205)
T ss_pred EEEEEcccHHHhhhHHHHHHHhhhh-ccCCCCeEEEeeccccHhheecCHHHHHHH----HHhcCCcceeecccCCccCH
Confidence 9999999999999999999998765 4467899999999999875221 1122222 2234446 999999999999
Q ss_pred HHHHHHHHHHHHhhhccCCC
Q 029446 167 YEGLDWLASTLKEMRAAGYS 186 (193)
Q Consensus 167 ~~~~~~l~~~~~~~~~~~~~ 186 (193)
++.|..|...+.++...+..
T Consensus 161 e~~F~~la~~lk~~~~~~~~ 180 (205)
T KOG0084|consen 161 EDAFLTLAKELKQRKGLHVK 180 (205)
T ss_pred HHHHHHHHHHHHHhcccCCC
Confidence 99999999999887765443
No 4
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=100.00 E-value=2e-36 Score=212.47 Aligned_cols=170 Identities=62% Similarity=1.118 Sum_probs=147.9
Q ss_pred HhhhhcCCCccEEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEEEEEcCEEEEEEecCCCCCCHHhHHhhhcCCCE
Q 029446 8 LFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDG 87 (193)
Q Consensus 8 ~~~~~~~~~~~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 87 (193)
+++.....+.+||+++|.+|+|||||++++..+.+..+.||.+.++..+....+.+.+||+||+..++..+..+++++|+
T Consensus 4 ~~~~~~~~~~~ki~l~G~~~~GKTsL~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ 83 (175)
T smart00177 4 LFSKLFGNKEMRILMVGLDAAGKTTILYKLKLGESVTTIPTIGFNVETVTYKNISFTVWDVGGQDKIRPLWRHYYTNTQG 83 (175)
T ss_pred hhhhhcCCCccEEEEEcCCCCCHHHHHHHHhcCCCCCcCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCE
Confidence 34444446689999999999999999999987777677789998888787888999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCCHH
Q 029446 88 LIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLY 167 (193)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 167 (193)
+++|+|++++.++++...++..+++.....+.|+++|+||+|+.+....+++.+.++....+...+.++++||++|+|++
T Consensus 84 ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~ 163 (175)
T smart00177 84 LIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKAAEITEKLGLHSIRDRNWYIQPTCATSGDGLY 163 (175)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCCHHHHHHHhCccccCCCcEEEEEeeCCCCCCHH
Confidence 99999999999999999999998765444678999999999998766667787877776666677788899999999999
Q ss_pred HHHHHHHHHH
Q 029446 168 EGLDWLASTL 177 (193)
Q Consensus 168 ~~~~~l~~~~ 177 (193)
+++++|.+.+
T Consensus 164 e~~~~l~~~~ 173 (175)
T smart00177 164 EGLTWLSNNL 173 (175)
T ss_pred HHHHHHHHHh
Confidence 9999998875
No 5
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=100.00 E-value=5.5e-36 Score=208.86 Aligned_cols=162 Identities=63% Similarity=1.128 Sum_probs=141.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEEEEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEE
Q 029446 14 GNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVD 93 (193)
Q Consensus 14 ~~~~~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 93 (193)
....+||+++|.+|+|||||++++..+.+..+.||.+.++..+....+.+.+||+||+++++..++.+++++|++++|+|
T Consensus 6 ~~~~~kv~i~G~~~~GKTsli~~l~~~~~~~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~D 85 (168)
T cd04149 6 GNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVD 85 (168)
T ss_pred CCCccEEEEECcCCCCHHHHHHHHccCCCccccCCcccceEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEe
Confidence 35679999999999999999999998887777789998887777888999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHHHH
Q 029446 94 SLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 173 (193)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l 173 (193)
++++.++++...++.+++......+.|+++|+||+|+.+....+++.+.++....+...++++++||++|+|++++|++|
T Consensus 86 ~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~~~~~l 165 (168)
T cd04149 86 SADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWL 165 (168)
T ss_pred CCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCCCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHHHHHHH
Confidence 99999999999999888775444678999999999998766667777776655555566789999999999999999998
Q ss_pred HH
Q 029446 174 AS 175 (193)
Q Consensus 174 ~~ 175 (193)
.+
T Consensus 166 ~~ 167 (168)
T cd04149 166 SS 167 (168)
T ss_pred hc
Confidence 65
No 6
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.7e-36 Score=206.01 Aligned_cols=164 Identities=21% Similarity=0.335 Sum_probs=145.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEEE--E--EEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEE
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVEK--V--QYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLI 89 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~--~--~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (193)
-+.+|++++|+.++||||||++++.+.|. .|.+|+|+++.. + ....+++++|||+||++|+.+.+.|++++.++|
T Consensus 20 ~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vav 99 (221)
T KOG0094|consen 20 LKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 99 (221)
T ss_pred ceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEE
Confidence 35599999999999999999999999987 578999998754 2 235789999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHH
Q 029446 90 YVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEG 169 (193)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~ 169 (193)
+|||+++..+|+....|+.++..++...+.-+++|+||.||.+. +++..+.+...++..+..|+++||+.|+||+++
T Consensus 100 iVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dk---rqvs~eEg~~kAkel~a~f~etsak~g~NVk~l 176 (221)
T KOG0094|consen 100 IVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDK---RQVSIEEGERKAKELNAEFIETSAKAGENVKQL 176 (221)
T ss_pred EEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccch---hhhhHHHHHHHHHHhCcEEEEecccCCCCHHHH
Confidence 99999999999999999999999877666788899999999987 556555555667788889999999999999999
Q ss_pred HHHHHHHHHhhh
Q 029446 170 LDWLASTLKEMR 181 (193)
Q Consensus 170 ~~~l~~~~~~~~ 181 (193)
|..|...+....
T Consensus 177 FrrIaa~l~~~~ 188 (221)
T KOG0094|consen 177 FRRIAAALPGME 188 (221)
T ss_pred HHHHHHhccCcc
Confidence 999998887654
No 7
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=100.00 E-value=1.8e-35 Score=204.52 Aligned_cols=158 Identities=66% Similarity=1.179 Sum_probs=138.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEEEEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCCh
Q 029446 18 MRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDR 97 (193)
Q Consensus 18 ~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~ 97 (193)
+||+++|.+++|||||++++..+.+..+.||.+.+...+....+.+.+||+||++++...+..+++++|++++|+|++++
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~~~~pt~g~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~~ 80 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 80 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCcccCCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCH
Confidence 58999999999999999999888887778899988877778889999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHHHHHH
Q 029446 98 ERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAS 175 (193)
Q Consensus 98 ~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 175 (193)
.+++....++..+.......+.|+++++||+|+.+....+++.+.+....++...+.++++||++|+|++++|++|.+
T Consensus 81 ~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~~~l~~ 158 (159)
T cd04150 81 ERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSN 158 (159)
T ss_pred HHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHHHHHhc
Confidence 999999998988876544457899999999999776556677777766656667778999999999999999999864
No 8
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=100.00 E-value=6.6e-35 Score=204.60 Aligned_cols=172 Identities=53% Similarity=0.977 Sum_probs=150.4
Q ss_pred hHHHHhhhhcCCCccEEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEEEEEcCEEEEEEecCCCCCCHHhHHhhhc
Q 029446 4 AFRKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFN 83 (193)
Q Consensus 4 ~~~~~~~~~~~~~~~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~ 83 (193)
++.++++.+.....++|+++|++|+|||||++++..+.+..+.+|.+.++..+.+..+.+.+||+||+.++...+..+++
T Consensus 2 ~~~~~~~~~~~~~~~kv~~~G~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~ 81 (174)
T cd04153 2 LFSSLWSLFFPRKEYKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSNVEEIVYKNIRFLMWDIGGQESLRSSWNTYYT 81 (174)
T ss_pred chhHHHHHhcCCCccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceEEEEECCeEEEEEECCCCHHHHHHHHHHhh
Confidence 46778887766678999999999999999999999888877788999888888888999999999999999999999999
Q ss_pred CCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccC
Q 029446 84 NTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKG 163 (193)
Q Consensus 84 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (193)
++|++++|+|+++++++.....++..+.+.....+.|+++++||+|+......+++.+.++....+...+++++|||++|
T Consensus 82 ~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g 161 (174)
T cd04153 82 NTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPAEISESLGLTSIRDHTWHIQGCCALTG 161 (174)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEecccCCC
Confidence 99999999999999999988888888876544467999999999999876566777777776555666788999999999
Q ss_pred CCHHHHHHHHHH
Q 029446 164 DGLYEGLDWLAS 175 (193)
Q Consensus 164 ~gi~~~~~~l~~ 175 (193)
+|+++++++|.+
T Consensus 162 ~gi~e~~~~l~~ 173 (174)
T cd04153 162 EGLPEGLDWIAS 173 (174)
T ss_pred CCHHHHHHHHhc
Confidence 999999999864
No 9
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.2e-36 Score=205.34 Aligned_cols=163 Identities=25% Similarity=0.343 Sum_probs=139.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCcccc-ccccceeEEEEEE----cCEEEEEEecCCCCCCHHhHHhhhcCCCEEE
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHIGEVLST-VPTIGFNVEKVQY----KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLI 89 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~~~-~~t~~~~~~~~~~----~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (193)
...+|++++|..++|||||+-|+..+.|.++ .+|+|..+.+... ..+++.||||+||++|.++.+.|+++++++|
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi 82 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI 82 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence 4679999999999999999999999999976 7999987765433 3589999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCcCCCCceEEEEeccccCCCHH
Q 029446 90 YVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA--MTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLY 167 (193)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 167 (193)
+|||+++.+||..+..|+.++..... +++-+.+||||+||.+. .+.++... .+...+..|+++||+++.|++
T Consensus 83 vvYDit~~~SF~~aK~WvkeL~~~~~-~~~vialvGNK~DL~~~R~V~~~ea~~-----yAe~~gll~~ETSAKTg~Nv~ 156 (200)
T KOG0092|consen 83 VVYDITDEESFEKAKNWVKELQRQAS-PNIVIALVGNKADLLERREVEFEEAQA-----YAESQGLLFFETSAKTGENVN 156 (200)
T ss_pred EEEecccHHHHHHHHHHHHHHHhhCC-CCeEEEEecchhhhhhcccccHHHHHH-----HHHhcCCEEEEEecccccCHH
Confidence 99999999999999999999976644 77778899999999883 23333222 234466689999999999999
Q ss_pred HHHHHHHHHHHhhhcc
Q 029446 168 EGLDWLASTLKEMRAA 183 (193)
Q Consensus 168 ~~~~~l~~~~~~~~~~ 183 (193)
++|..|.+.+......
T Consensus 157 ~if~~Ia~~lp~~~~~ 172 (200)
T KOG0092|consen 157 EIFQAIAEKLPCSDPQ 172 (200)
T ss_pred HHHHHHHHhccCcccc
Confidence 9999999999877654
No 10
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.2e-35 Score=200.32 Aligned_cols=166 Identities=21% Similarity=0.307 Sum_probs=144.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE----EEEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEE
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE----KVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLI 89 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~----~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (193)
...+|++++|+.|+|||+|+.+++.+.|. .+..|+|+.+. +++.+.+++++|||+||+.|++.+++|++++-+++
T Consensus 4 ~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Gal 83 (216)
T KOG0098|consen 4 AYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGAL 83 (216)
T ss_pred cceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcceE
Confidence 46799999999999999999999999987 45688887764 34457899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHH
Q 029446 90 YVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEG 169 (193)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~ 169 (193)
+|||++++++|..+..|+.++.+.. .++.-+++++||+||... +++.++.+...+++.+..++++||++++|+++.
T Consensus 84 LVydit~r~sF~hL~~wL~D~rq~~-~~NmvImLiGNKsDL~~r---R~Vs~EEGeaFA~ehgLifmETSakt~~~VEEa 159 (216)
T KOG0098|consen 84 LVYDITRRESFNHLTSWLEDARQHS-NENMVIMLIGNKSDLEAR---REVSKEEGEAFAREHGLIFMETSAKTAENVEEA 159 (216)
T ss_pred EEEEccchhhHHHHHHHHHHHHHhc-CCCcEEEEEcchhhhhcc---ccccHHHHHHHHHHcCceeehhhhhhhhhHHHH
Confidence 9999999999999999999998763 478999999999999876 345555555555667778999999999999999
Q ss_pred HHHHHHHHHhhhccC
Q 029446 170 LDWLASTLKEMRAAG 184 (193)
Q Consensus 170 ~~~l~~~~~~~~~~~ 184 (193)
|..+...+++....|
T Consensus 160 F~nta~~Iy~~~q~g 174 (216)
T KOG0098|consen 160 FINTAKEIYRKIQDG 174 (216)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999887654
No 11
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.5e-34 Score=195.82 Aligned_cols=179 Identities=64% Similarity=1.156 Sum_probs=171.9
Q ss_pred CchhHHHHhhhhcCCCccEEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEEEEEcCEEEEEEecCCCCCCHHhHHh
Q 029446 1 MGQAFRKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRH 80 (193)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~ 80 (193)
||..+.+++......++++|+++|-.+|||||+++++-.+++..+.||+|.++..+.++++++.+||.+||+.++.+|..
T Consensus 1 MG~~~s~~~~~~~~~~e~~IlmlGLD~AGKTTILykLk~~E~vttvPTiGfnVE~v~ykn~~f~vWDvGGq~k~R~lW~~ 80 (181)
T KOG0070|consen 1 MGLIFSKLFSGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTVPTIGFNVETVEYKNISFTVWDVGGQEKLRPLWKH 80 (181)
T ss_pred CcchhhhhhhhccCcceEEEEEEeccCCCceeeeEeeccCCcccCCCccccceeEEEEcceEEEEEecCCCcccccchhh
Confidence 88899999999999999999999999999999999999999998899999999999999999999999999999999999
Q ss_pred hhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEecc
Q 029446 81 YFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCA 160 (193)
Q Consensus 81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (193)
|+++.+++|||+|.++++.+.+....+..++.....++.|+++.+||.|+.......++...+++..++.+.+.+..|+|
T Consensus 81 Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~~~w~iq~~~a 160 (181)
T KOG0070|consen 81 YFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRSRNWHIQSTCA 160 (181)
T ss_pred hccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhhhccCCCCcEEeeccc
Confidence 99999999999999999999999999999999877789999999999999999999999999999999999999999999
Q ss_pred ccCCCHHHHHHHHHHHHHh
Q 029446 161 LKGDGLYEGLDWLASTLKE 179 (193)
Q Consensus 161 ~~~~gi~~~~~~l~~~~~~ 179 (193)
.+|+|+.+.++++.+.+..
T Consensus 161 ~~G~GL~egl~wl~~~~~~ 179 (181)
T KOG0070|consen 161 ISGEGLYEGLDWLSNNLKK 179 (181)
T ss_pred cccccHHHHHHHHHHHHhc
Confidence 9999999999999998854
No 12
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=100.00 E-value=6.7e-34 Score=199.36 Aligned_cols=166 Identities=42% Similarity=0.813 Sum_probs=141.8
Q ss_pred hhhcCCCccEEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEEEEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEE
Q 029446 10 DVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLI 89 (193)
Q Consensus 10 ~~~~~~~~~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (193)
+..+....++|+++|++|+|||||++++.+..+..+.+|.+.....+......+.+||+||++.++..+..+++++|+++
T Consensus 7 ~~~~~~~~~kv~ivG~~~~GKTsL~~~l~~~~~~~~~~t~g~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i 86 (173)
T cd04154 7 KQKLKEREMRILILGLDNAGKTTILKKLLGEDIDTISPTLGFQIKTLEYEGYKLNIWDVGGQKTLRPYWRNYFESTDALI 86 (173)
T ss_pred hhhcCCCccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 34455678999999999999999999999887767778888777777778899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHH
Q 029446 90 YVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEG 169 (193)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~ 169 (193)
+|+|++++.++++...|+..+.......+.|+++|+||+|+.+....+++.+.+.....+...++++++||++|.|++++
T Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l 166 (173)
T cd04154 87 WVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALSEEEIREALELDKISSHHWRIQPCSAVTGEGLLQG 166 (173)
T ss_pred EEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCCCHHHHHHHhCccccCCCceEEEeccCCCCcCHHHH
Confidence 99999999999999888888876544568999999999999876555666666655444566789999999999999999
Q ss_pred HHHHHH
Q 029446 170 LDWLAS 175 (193)
Q Consensus 170 ~~~l~~ 175 (193)
++++.+
T Consensus 167 ~~~l~~ 172 (173)
T cd04154 167 IDWLVD 172 (173)
T ss_pred HHHHhc
Confidence 999864
No 13
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=100.00 E-value=1.4e-34 Score=204.69 Aligned_cols=161 Identities=16% Similarity=0.245 Sum_probs=131.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE--EEEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEEE
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE--KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLI 89 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (193)
.+.+||+++|+.|+|||||+.++..+.+. .+.++.+..+. .+.. ..+.+.+||++|+++|..++..+++++|+++
T Consensus 4 ~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~il 83 (189)
T cd04121 4 DYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGII 83 (189)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEE
Confidence 46799999999999999999999998876 44566666553 3333 3488999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcCCCCceEEEEeccccCCCHH
Q 029446 90 YVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLY 167 (193)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 167 (193)
+|||++++.+|+++..|+.++.... ++.|+|||+||+|+.... ..++ .+.+ ++..++++++|||++|.||+
T Consensus 84 lVfD~t~~~Sf~~~~~w~~~i~~~~--~~~piilVGNK~DL~~~~~v~~~~-~~~~----a~~~~~~~~e~SAk~g~~V~ 156 (189)
T cd04121 84 LVYDITNRWSFDGIDRWIKEIDEHA--PGVPKILVGNRLHLAFKRQVATEQ-AQAY----AERNGMTFFEVSPLCNFNIT 156 (189)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECccchhccCCCHHH-HHHH----HHHcCCEEEEecCCCCCCHH
Confidence 9999999999999999999986543 579999999999997532 2222 2222 23456689999999999999
Q ss_pred HHHHHHHHHHHhhhc
Q 029446 168 EGLDWLASTLKEMRA 182 (193)
Q Consensus 168 ~~~~~l~~~~~~~~~ 182 (193)
++|++|.+.+..++.
T Consensus 157 ~~F~~l~~~i~~~~~ 171 (189)
T cd04121 157 ESFTELARIVLMRHG 171 (189)
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999998876663
No 14
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=100.00 E-value=1.3e-33 Score=197.14 Aligned_cols=162 Identities=52% Similarity=0.931 Sum_probs=137.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEEEEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCChh
Q 029446 19 RVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE 98 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~ 98 (193)
||+++|.++||||||++++.+..+..+.||.+..+..+.+..+.+.+||+||+.+++..+..+++++|++++|+|+++++
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~~~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~~~ 80 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRD 80 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCCcCCcCceeEEEEEECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeCCcHH
Confidence 68999999999999999999988777788999888888888999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcC-CCCceEEEEeccccCCCHHHHHHHHHHHH
Q 029446 99 RIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDL-KNRKWHIQGTCALKGDGLYEGLDWLASTL 177 (193)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~ 177 (193)
+++++..|+..+.......+.|+++|+||+|+.+....+++.+.+..... ....+.+++|||++|.|++++|++|.+.+
T Consensus 81 s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~l~~~~ 160 (169)
T cd04158 81 RVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQL 160 (169)
T ss_pred HHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHHHHHHHHH
Confidence 99999999999886544456899999999999876555666555443222 22345789999999999999999998876
Q ss_pred Hhh
Q 029446 178 KEM 180 (193)
Q Consensus 178 ~~~ 180 (193)
.+.
T Consensus 161 ~~~ 163 (169)
T cd04158 161 VAA 163 (169)
T ss_pred hhc
Confidence 543
No 15
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=100.00 E-value=1.5e-33 Score=197.67 Aligned_cols=171 Identities=46% Similarity=0.871 Sum_probs=155.4
Q ss_pred HHhhhhcC-CCccEEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEEEEEcCEEEEEEecCCCCCCHHhHHhhhcCC
Q 029446 7 KLFDVFFG-NSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNT 85 (193)
Q Consensus 7 ~~~~~~~~-~~~~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 85 (193)
+++..... .+.++|+++|..||||||+++++..+....+.||.|.+...+.+.+..+.+||.+|+..++..|+.+++++
T Consensus 3 ~~~~~~~~~~~~~~ililGl~~sGKTtll~~l~~~~~~~~~pT~g~~~~~i~~~~~~~~~~d~gG~~~~~~~w~~y~~~~ 82 (175)
T PF00025_consen 3 SVLSKLKSKKKEIKILILGLDGSGKTTLLNRLKNGEISETIPTIGFNIEEIKYKGYSLTIWDLGGQESFRPLWKSYFQNA 82 (175)
T ss_dssp HHHHHCTTTTSEEEEEEEESTTSSHHHHHHHHHSSSEEEEEEESSEEEEEEEETTEEEEEEEESSSGGGGGGGGGGHTTE
T ss_pred HHHHHhcccCcEEEEEEECCCccchHHHHHHhhhccccccCcccccccceeeeCcEEEEEEeccccccccccceeecccc
Confidence 33444333 78999999999999999999999988877888999999999999999999999999999999999999999
Q ss_pred CEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCC-CCceEEEEeccccCC
Q 029446 86 DGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLK-NRKWHIQGTCALKGD 164 (193)
Q Consensus 86 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~ 164 (193)
|++|||+|+++.+.+.+....+..++......+.|+++++||.|+.+....+++...+.+..+. ...+.++.|||.+|+
T Consensus 83 ~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~ 162 (175)
T PF00025_consen 83 DGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGE 162 (175)
T ss_dssp SEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTGGGTTSSSCEEEEEEBTTTTB
T ss_pred ceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhhhhcccCCceEEEeeeccCCc
Confidence 9999999999999999999999999887666789999999999999888888898888877775 788899999999999
Q ss_pred CHHHHHHHHHHHH
Q 029446 165 GLYEGLDWLASTL 177 (193)
Q Consensus 165 gi~~~~~~l~~~~ 177 (193)
|+.+.++||.+++
T Consensus 163 Gv~e~l~WL~~~~ 175 (175)
T PF00025_consen 163 GVDEGLEWLIEQI 175 (175)
T ss_dssp THHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcC
Confidence 9999999999864
No 16
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=100.00 E-value=4.6e-34 Score=203.83 Aligned_cols=159 Identities=18% Similarity=0.292 Sum_probs=127.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-cccccceeEE--EEEEc--CEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEE
Q 029446 18 MRVVMLGLDAAGKTTILYKLHIGEVLS-TVPTIGFNVE--KVQYK--NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVV 92 (193)
Q Consensus 18 ~~v~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~--~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (193)
+.|+++|+.|+|||||++++..+.+.. +.+|.+..+. .+..+ .+.+.+|||+|+++|+.++..+++++|++++||
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 468999999999999999999998874 5678776654 34443 488999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH-hHHHhhhCCCcCCC-CceEEEEeccccCCCHHHHH
Q 029446 93 DSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP-MEVCEGLGLFDLKN-RKWHIQGTCALKGDGLYEGL 170 (193)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~gi~~~~ 170 (193)
|++++++|+++..|+..+... ...+.|+++|+||+|+...... .+..+.+ ++. .++.+++|||++|+||+++|
T Consensus 81 Dvtd~~Sf~~l~~w~~~i~~~-~~~~~piilVgNK~DL~~~~~v~~~~~~~~----a~~~~~~~~~etSAktg~gV~e~F 155 (202)
T cd04120 81 DITKKETFDDLPKWMKMIDKY-ASEDAELLLVGNKLDCETDREISRQQGEKF----AQQITGMRFCEASAKDNFNVDEIF 155 (202)
T ss_pred ECcCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEECcccccccccCHHHHHHH----HHhcCCCEEEEecCCCCCCHHHHH
Confidence 999999999999888766443 3467999999999999653221 1111222 112 24589999999999999999
Q ss_pred HHHHHHHHhhh
Q 029446 171 DWLASTLKEMR 181 (193)
Q Consensus 171 ~~l~~~~~~~~ 181 (193)
++|.+.+.+..
T Consensus 156 ~~l~~~~~~~~ 166 (202)
T cd04120 156 LKLVDDILKKM 166 (202)
T ss_pred HHHHHHHHHhC
Confidence 99999886543
No 17
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.5e-34 Score=199.72 Aligned_cols=167 Identities=19% Similarity=0.280 Sum_probs=141.1
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEEE--EEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCE
Q 029446 13 FGNSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVEK--VQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDG 87 (193)
Q Consensus 13 ~~~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~--~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 87 (193)
..++.+||+++|+++||||+++.++..+.+. .+..|.|+++.. +.. ..+.+++|||+||++|+.+...|+++|++
T Consensus 8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~g 87 (207)
T KOG0078|consen 8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMG 87 (207)
T ss_pred CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCe
Confidence 5578899999999999999999999999987 456888888753 333 56889999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCCHH
Q 029446 88 LIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLY 167 (193)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 167 (193)
+++|||+++..+|+++..|+..+-+ +...+.|.++|+||+|+... +++..+.+...+...+++++|+||++|.||+
T Consensus 88 i~LvyDitne~Sfeni~~W~~~I~e-~a~~~v~~~LvGNK~D~~~~---R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~ 163 (207)
T KOG0078|consen 88 ILLVYDITNEKSFENIRNWIKNIDE-HASDDVVKILVGNKCDLEEK---RQVSKERGEALAREYGIKFFETSAKTNFNIE 163 (207)
T ss_pred eEEEEEccchHHHHHHHHHHHHHHh-hCCCCCcEEEeecccccccc---ccccHHHHHHHHHHhCCeEEEccccCCCCHH
Confidence 9999999999999999997777654 45569999999999999874 3333333333445667799999999999999
Q ss_pred HHHHHHHHHHHhhhcc
Q 029446 168 EGLDWLASTLKEMRAA 183 (193)
Q Consensus 168 ~~~~~l~~~~~~~~~~ 183 (193)
++|..|.+.+.++...
T Consensus 164 eaF~~La~~i~~k~~~ 179 (207)
T KOG0078|consen 164 EAFLSLARDILQKLED 179 (207)
T ss_pred HHHHHHHHHHHhhcch
Confidence 9999999999865543
No 18
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=100.00 E-value=2.6e-34 Score=201.16 Aligned_cols=161 Identities=17% Similarity=0.252 Sum_probs=129.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE-EEEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEE
Q 029446 17 EMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE-KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVV 92 (193)
Q Consensus 17 ~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~-~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (193)
.+||+++|.+|+|||||++++..+.++ .+.||.+..+. .+.. ..+.+.+||+||+++++..+..+++++|++++||
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~ 81 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIICY 81 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEE
Confidence 579999999999999999999999887 45678775554 3333 3478999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH-hHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHH
Q 029446 93 DSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP-MEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLD 171 (193)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~ 171 (193)
|++++.+|+.+..|+..+.......+.|+++|+||+|+...... .+....+ ++..++++++|||++|.||+++|+
T Consensus 82 d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~----a~~~~~~~~e~Sa~~~~~v~~~f~ 157 (172)
T cd04141 82 SVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNL----AREFNCPFFETSAALRHYIDDAFH 157 (172)
T ss_pred ECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHH----HHHhCCEEEEEecCCCCCHHHHHH
Confidence 99999999999887766654333357999999999998654211 1111111 234566899999999999999999
Q ss_pred HHHHHHHhhh
Q 029446 172 WLASTLKEMR 181 (193)
Q Consensus 172 ~l~~~~~~~~ 181 (193)
++.+.+.+..
T Consensus 158 ~l~~~~~~~~ 167 (172)
T cd04141 158 GLVREIRRKE 167 (172)
T ss_pred HHHHHHHHhc
Confidence 9999887644
No 19
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=5e-33 Score=196.67 Aligned_cols=173 Identities=31% Similarity=0.526 Sum_probs=148.0
Q ss_pred hHHHHhhhhc-CCCccEEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEEEEEcCEEEEEEecCCCCCCHHhHHhhh
Q 029446 4 AFRKLFDVFF-GNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYF 82 (193)
Q Consensus 4 ~~~~~~~~~~-~~~~~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~ 82 (193)
-|.++++.+. ..+.++|+++|.+|||||||++++.++.+..+.||.+.+...+...+.++.+||+||+..++..+..++
T Consensus 3 ~~~~~~~~~~~~~~~~~i~ivG~~~~GKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~ 82 (184)
T smart00178 3 WFYDILASLGLWNKHAKILFLGLDNAGKTTLLHMLKNDRLAQHQPTQHPTSEELAIGNIKFTTFDLGGHQQARRLWKDYF 82 (184)
T ss_pred HHHHHHHHhccccccCEEEEECCCCCCHHHHHHHHhcCCCcccCCccccceEEEEECCEEEEEEECCCCHHHHHHHHHHh
Confidence 3667777443 378899999999999999999999998777667788888777888889999999999999999999999
Q ss_pred cCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCC-------CCceEE
Q 029446 83 NNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLK-------NRKWHI 155 (193)
Q Consensus 83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-------~~~~~~ 155 (193)
.++|++++|+|++++.++.....++..+.+.....+.|+++|+||+|+......+++.+.+++.... .....+
T Consensus 83 ~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i 162 (184)
T smart00178 83 PEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGLTNTTGSKGKVGVRPLEV 162 (184)
T ss_pred CCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCHHHHHHHcCCCcccccccccCCceeEE
Confidence 9999999999999999999988888888765445689999999999998777778888888765432 245679
Q ss_pred EEeccccCCCHHHHHHHHHHH
Q 029446 156 QGTCALKGDGLYEGLDWLAST 176 (193)
Q Consensus 156 ~~~Sa~~~~gi~~~~~~l~~~ 176 (193)
++|||++++|++++++||.++
T Consensus 163 ~~~Sa~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 163 FMCSVVRRMGYGEGFKWLSQY 183 (184)
T ss_pred EEeecccCCChHHHHHHHHhh
Confidence 999999999999999999865
No 20
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=100.00 E-value=4.6e-33 Score=192.36 Aligned_cols=157 Identities=59% Similarity=1.073 Sum_probs=134.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEEEEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCChh
Q 029446 19 RVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE 98 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~ 98 (193)
||+++|++++|||||++++..+.+..+.||.+.+...+.+...++.+||+||+..++..+..+++++|++++|+|++++.
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~ 80 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRD 80 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcCcCCccCcCeEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEECCCHH
Confidence 68999999999999999998888777778888888778788899999999999999999999999999999999999998
Q ss_pred hHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHHHHHH
Q 029446 99 RIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAS 175 (193)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 175 (193)
++.....++..+++.....+.|+++|+||+|+.+.....++...++....+..+.+++++||+++.|+++++++|.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 157 (158)
T cd04151 81 RLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMDWLVN 157 (158)
T ss_pred HHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHHHHhc
Confidence 88887777777666544457999999999999876555666666665444555678999999999999999999864
No 21
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=100.00 E-value=8.8e-34 Score=204.53 Aligned_cols=163 Identities=20% Similarity=0.246 Sum_probs=131.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEEEEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCCh
Q 029446 18 MRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDR 97 (193)
Q Consensus 18 ~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~ 97 (193)
+||+++|.+|+|||||++++..+.+..+.+|.+..+....+..+.+.+||++|++.+...+..+++++|++|+|||++++
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~~~~Tig~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~~ 80 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKDTVSTVGGAFYLKQWGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYDVSNV 80 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCCCCccceEEEEEEeeEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEECCCH
Confidence 58999999999999999999999988777888888776667778999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC---------------------CCHhH---HHhhhCC------Cc
Q 029446 98 ERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA---------------------MTPME---VCEGLGL------FD 147 (193)
Q Consensus 98 ~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~---------------------~~~~~---~~~~~~~------~~ 147 (193)
++|+++..|+..+... ...+.|+|+|+||+|+.+. ...++ +.+.... ..
T Consensus 81 ~Sf~~l~~~~~~l~~~-~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~~~~ 159 (220)
T cd04126 81 QSLEELEDRFLGLTDT-ANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDL 159 (220)
T ss_pred HHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccccccccc
Confidence 9999999999888654 3357899999999998751 01111 1111110 00
Q ss_pred CCCCceEEEEeccccCCCHHHHHHHHHHHHHhhh
Q 029446 148 LKNRKWHIQGTCALKGDGLYEGLDWLASTLKEMR 181 (193)
Q Consensus 148 ~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~ 181 (193)
.....++|++|||++|+||+++|+.+++.+.+..
T Consensus 160 ~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~~ 193 (220)
T cd04126 160 SPAAEKMCFETSAKTGYNVDELFEYLFNLVLPLI 193 (220)
T ss_pred cccccceEEEeeCCCCCCHHHHHHHHHHHHHHHH
Confidence 0112268999999999999999999998877443
No 22
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=100.00 E-value=8.9e-33 Score=182.71 Aligned_cols=176 Identities=40% Similarity=0.730 Sum_probs=162.0
Q ss_pred HHHhhhhcCCCccEEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEEEEEcCEEEEEEecCCCCCCHHhHHhhhcCC
Q 029446 6 RKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNT 85 (193)
Q Consensus 6 ~~~~~~~~~~~~~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 85 (193)
.=+.+...++++++|+++|..||||||++++|.+.......||.|..+.++.++..++++||.+||...+..|+.|++..
T Consensus 5 silrk~k~kerE~riLiLGLdNsGKTti~~kl~~~~~~~i~pt~gf~Iktl~~~~~~L~iwDvGGq~~lr~~W~nYfest 84 (185)
T KOG0073|consen 5 SILRKQKLKEREVRILILGLDNSGKTTIVKKLLGEDTDTISPTLGFQIKTLEYKGYTLNIWDVGGQKTLRSYWKNYFEST 84 (185)
T ss_pred HHHHHHHhhhheeEEEEEecCCCCchhHHHHhcCCCccccCCccceeeEEEEecceEEEEEEcCCcchhHHHHHHhhhcc
Confidence 33444555778999999999999999999999999988889999999999999999999999999999999999999999
Q ss_pred CEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcC-CCCceEEEEeccccCC
Q 029446 86 DGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDL-KNRKWHIQGTCALKGD 164 (193)
Q Consensus 86 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~ 164 (193)
|++|+|+|.+++..+++..+.+.+++......+.|+++++||.|+......+++...+.+..+ ++.+++++.||+.+|+
T Consensus 85 dglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge 164 (185)
T KOG0073|consen 85 DGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCSAVTGE 164 (185)
T ss_pred CeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEEeccccc
Confidence 999999999999999999999999988766778999999999999988888899988888777 8899999999999999
Q ss_pred CHHHHHHHHHHHHHhhh
Q 029446 165 GLYEGLDWLASTLKEMR 181 (193)
Q Consensus 165 gi~~~~~~l~~~~~~~~ 181 (193)
++.+.++|+.+.+.++.
T Consensus 165 ~l~~gidWL~~~l~~r~ 181 (185)
T KOG0073|consen 165 DLLEGIDWLCDDLMSRL 181 (185)
T ss_pred cHHHHHHHHHHHHHHHh
Confidence 99999999999998754
No 23
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=100.00 E-value=8.8e-34 Score=199.65 Aligned_cols=161 Identities=18% Similarity=0.206 Sum_probs=127.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE-EEE--EcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEE
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE-KVQ--YKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIY 90 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~-~~~--~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 90 (193)
...+||+++|++++|||||++++..+.+. .+.||.+..+. .+. ...+.+.+|||+|+++|..+++.+++++|++++
T Consensus 3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~il 82 (182)
T cd04172 3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI 82 (182)
T ss_pred cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeEEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEEE
Confidence 46789999999999999999999999887 46788876653 222 346789999999999999999999999999999
Q ss_pred EEECCChhhHHHH-HHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC---------HhHHHhhhCCCcCCCCce-EEEEec
Q 029446 91 VVDSLDRERIGKA-KQEFQAIIKDPFMLNSVILVFANKQDMKGAMT---------PMEVCEGLGLFDLKNRKW-HIQGTC 159 (193)
Q Consensus 91 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~---------~~~~~~~~~~~~~~~~~~-~~~~~S 159 (193)
|||++++.+|+++ ..|+..+.... ++.|+|+|+||+|+.+... ...+....+...++..++ +|++||
T Consensus 83 vyDit~~~Sf~~~~~~w~~~i~~~~--~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~S 160 (182)
T cd04172 83 CFDISRPETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECS 160 (182)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHHC--CCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECC
Confidence 9999999999997 67777765532 5789999999999864210 011222222222345553 899999
Q ss_pred cccCCC-HHHHHHHHHHHH
Q 029446 160 ALKGDG-LYEGLDWLASTL 177 (193)
Q Consensus 160 a~~~~g-i~~~~~~l~~~~ 177 (193)
|++|+| |+++|+.+++.+
T Consensus 161 Ak~~~n~v~~~F~~~~~~~ 179 (182)
T cd04172 161 ALQSENSVRDIFHVATLAC 179 (182)
T ss_pred cCCCCCCHHHHHHHHHHHH
Confidence 999998 999999998864
No 24
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=100.00 E-value=1.3e-32 Score=190.74 Aligned_cols=157 Identities=42% Similarity=0.763 Sum_probs=131.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCc-c-ccccccceeEEEEEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCC
Q 029446 19 RVVMLGLDAAGKTTILYKLHIGEV-L-STVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD 96 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~~~~-~-~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~ 96 (193)
+|+++|++|||||||++++.+... . .+.||.+.....+......+.+||+||+.++...+..+++++|++++|+|+++
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~ 80 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVESFEKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSD 80 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEEEEECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEeCCc
Confidence 589999999999999999998753 3 56788888777777788999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHcCCC--CCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHHHHH
Q 029446 97 RERIGKAKQEFQAIIKDPF--MLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLA 174 (193)
Q Consensus 97 ~~s~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~ 174 (193)
+.+++....++..+.+... ..+.|+++|+||+|+.+.....++...+.........++++++||++|+|+++++++|.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~~~~~l~ 160 (162)
T cd04157 81 RLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAVKITQLLGLENIKDKPWHIFASNALTGEGLDEGVQWLQ 160 (162)
T ss_pred HHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCHHHHHHHhCCccccCceEEEEEeeCCCCCchHHHHHHHh
Confidence 9999988888888766432 25799999999999987655566666665443334456799999999999999999986
Q ss_pred H
Q 029446 175 S 175 (193)
Q Consensus 175 ~ 175 (193)
+
T Consensus 161 ~ 161 (162)
T cd04157 161 A 161 (162)
T ss_pred c
Confidence 4
No 25
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=100.00 E-value=1.3e-33 Score=200.77 Aligned_cols=164 Identities=20% Similarity=0.234 Sum_probs=127.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE---EEEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEE
Q 029446 16 SEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE---KVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYV 91 (193)
Q Consensus 16 ~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~---~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 91 (193)
..+||+++|+.++|||||++++..+.+. .+.||.+..+. .+....+.+.+|||+|+++|+.+++.+++++|++++|
T Consensus 2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv 81 (191)
T cd01875 2 QSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC 81 (191)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence 4589999999999999999999999986 56788876654 2333468899999999999999999999999999999
Q ss_pred EECCChhhHHHHHH-HHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhh---------hCCCcCCCCc-eEEEEecc
Q 029446 92 VDSLDRERIGKAKQ-EFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEG---------LGLFDLKNRK-WHIQGTCA 160 (193)
Q Consensus 92 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~---------~~~~~~~~~~-~~~~~~Sa 160 (193)
||++++.+|+++.. |...+... ..+.|+++|+||.|+.+.....+.... .+...++..+ +++++|||
T Consensus 82 ydit~~~Sf~~~~~~w~~~i~~~--~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA 159 (191)
T cd01875 82 FSIASPSSYENVRHKWHPEVCHH--CPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSA 159 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCC
Confidence 99999999999975 65555433 257999999999999754221111111 1111122334 58999999
Q ss_pred ccCCCHHHHHHHHHHHHHhhh
Q 029446 161 LKGDGLYEGLDWLASTLKEMR 181 (193)
Q Consensus 161 ~~~~gi~~~~~~l~~~~~~~~ 181 (193)
++|+||+++|+++.+.+....
T Consensus 160 k~g~~v~e~f~~l~~~~~~~~ 180 (191)
T cd01875 160 LNQDGVKEVFAEAVRAVLNPT 180 (191)
T ss_pred CCCCCHHHHHHHHHHHHhccc
Confidence 999999999999999886543
No 26
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=100.00 E-value=1.1e-33 Score=198.15 Aligned_cols=158 Identities=18% Similarity=0.200 Sum_probs=125.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE-EEEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEE
Q 029446 18 MRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE-KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVD 93 (193)
Q Consensus 18 ~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~-~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 93 (193)
+||+++|++++|||||+.++..+.+. ++.||.+..+. .+.. ..+.+.+|||+|+++++..+..++++++++++|||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd 81 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS 81 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEEE
Confidence 68999999999999999999999987 56788876553 2222 45889999999999999999999999999999999
Q ss_pred CCChhhHHHH-HHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC-------HhHHHhhhCCCcCCCCce-EEEEeccccCC
Q 029446 94 SLDRERIGKA-KQEFQAIIKDPFMLNSVILVFANKQDMKGAMT-------PMEVCEGLGLFDLKNRKW-HIQGTCALKGD 164 (193)
Q Consensus 94 ~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 164 (193)
++++++|+++ ..|+..+.... .+.|+|+|+||+|+.+... ...+..+.+...++..+. ++++|||++|.
T Consensus 82 ~~~~~Sf~~~~~~w~~~i~~~~--~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~ 159 (176)
T cd04133 82 LISRASYENVLKKWVPELRHYA--PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQ 159 (176)
T ss_pred cCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCccc
Confidence 9999999998 57888775443 5799999999999965311 001111111122234444 69999999999
Q ss_pred CHHHHHHHHHHHH
Q 029446 165 GLYEGLDWLASTL 177 (193)
Q Consensus 165 gi~~~~~~l~~~~ 177 (193)
||+++|+.+.+.+
T Consensus 160 nV~~~F~~~~~~~ 172 (176)
T cd04133 160 NVKAVFDAAIKVV 172 (176)
T ss_pred CHHHHHHHHHHHH
Confidence 9999999999876
No 27
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=100.00 E-value=3.4e-33 Score=194.53 Aligned_cols=157 Identities=18% Similarity=0.312 Sum_probs=127.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccceeEEE--EEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEE
Q 029446 17 EMRVVMLGLDAAGKTTILYKLHIGEVLS-TVPTIGFNVEK--VQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYV 91 (193)
Q Consensus 17 ~~~v~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~~--~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 91 (193)
.+||+++|++|+|||||++++.++.+.. +.+|.+.++.. +.. ..+.+.+||+||++++...+..+++++|++++|
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 81 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 81 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 4799999999999999999999998764 45677766542 333 357899999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcCCCCceEEEEeccccCCCHHHH
Q 029446 92 VDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT--PMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEG 169 (193)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~ 169 (193)
||++++.+|+.+..|+..+... ..++.|+++|+||+|+..... .++..+ + ++..++++++|||++|+|++++
T Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~-~----~~~~~~~~~e~Sa~~~~~i~e~ 155 (166)
T cd04122 82 YDITRRSTYNHLSSWLTDARNL-TNPNTVIFLIGNKADLEAQRDVTYEEAKQ-F----ADENGLLFLECSAKTGENVEDA 155 (166)
T ss_pred EECCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECcccccccCcCHHHHHH-H----HHHcCCEEEEEECCCCCCHHHH
Confidence 9999999999999999887553 235789999999999976532 222222 1 2334568999999999999999
Q ss_pred HHHHHHHHHh
Q 029446 170 LDWLASTLKE 179 (193)
Q Consensus 170 ~~~l~~~~~~ 179 (193)
|..+.+.+.+
T Consensus 156 f~~l~~~~~~ 165 (166)
T cd04122 156 FLETAKKIYQ 165 (166)
T ss_pred HHHHHHHHhh
Confidence 9999987754
No 28
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=3.7e-34 Score=188.75 Aligned_cols=164 Identities=20% Similarity=0.308 Sum_probs=141.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccccc-cccceeEE----EEEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEE
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHIGEVLSTV-PTIGFNVE----KVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLI 89 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~~~~-~t~~~~~~----~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (193)
...+||+++|..|+|||||+-+|..+.+.+.. .|+|+++. .+..+.+++.||||+||++|+.+.+.|++++.++|
T Consensus 9 ~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiI 88 (209)
T KOG0080|consen 9 DTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGII 88 (209)
T ss_pred ceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeE
Confidence 45699999999999999999999999998654 45777654 34447889999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHH
Q 029446 90 YVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEG 169 (193)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~ 169 (193)
+|||++.+++|.++..|+.++-...-.+++-.++|+||+|...+ +.+.++.++..++....-+++|||++.+|++.+
T Consensus 89 lVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~---R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~ 165 (209)
T KOG0080|consen 89 LVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESE---RVVDREEGLKFARKHRCLFIECSAKTRENVQCC 165 (209)
T ss_pred EEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhc---ccccHHHHHHHHHhhCcEEEEcchhhhccHHHH
Confidence 99999999999999999999876655567777899999996543 567777777777888889999999999999999
Q ss_pred HHHHHHHHHhhh
Q 029446 170 LDWLASTLKEMR 181 (193)
Q Consensus 170 ~~~l~~~~~~~~ 181 (193)
|+.++.++.+.-
T Consensus 166 FeelveKIi~tp 177 (209)
T KOG0080|consen 166 FEELVEKIIETP 177 (209)
T ss_pred HHHHHHHHhcCc
Confidence 999999997654
No 29
>PTZ00369 Ras-like protein; Provisional
Probab=100.00 E-value=3.4e-33 Score=198.40 Aligned_cols=163 Identities=18% Similarity=0.232 Sum_probs=131.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEEE---EEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEE
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVEK---VQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIY 90 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~---~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 90 (193)
...+||+++|++|+|||||++++.++.+. .+.+|.+..+.. +....+.+.+|||||++++..++..+++++|++++
T Consensus 3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil 82 (189)
T PTZ00369 3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC 82 (189)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence 45799999999999999999999998876 456777765542 33345778999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcCCCCceEEEEeccccCCCHHH
Q 029446 91 VVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYE 168 (193)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 168 (193)
|||++++.+|+.+..|+..+.+.....+.|+++|+||+|+.+.. ...+... . .+..+.+++++||++|.|+++
T Consensus 83 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~-~----~~~~~~~~~e~Sak~~~gi~~ 157 (189)
T PTZ00369 83 VYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQE-L----AKSFGIPFLETSAKQRVNVDE 157 (189)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHH-H----HHHhCCEEEEeeCCCCCCHHH
Confidence 99999999999999998888765444688999999999986532 2211111 1 122345899999999999999
Q ss_pred HHHHHHHHHHhhhc
Q 029446 169 GLDWLASTLKEMRA 182 (193)
Q Consensus 169 ~~~~l~~~~~~~~~ 182 (193)
+|++|.+.+.+...
T Consensus 158 ~~~~l~~~l~~~~~ 171 (189)
T PTZ00369 158 AFYELVREIRKYLK 171 (189)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999998876654
No 30
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=3.1e-33 Score=202.77 Aligned_cols=165 Identities=17% Similarity=0.174 Sum_probs=129.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEEE-E--EEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEE
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVEK-V--QYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIY 90 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~-~--~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 90 (193)
...+||+++|++++|||||+++|..+.+. .+.||++..+.. + ....+.+.+|||+|+++|...++.+++++|++++
T Consensus 11 ~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIl 90 (232)
T cd04174 11 VMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLL 90 (232)
T ss_pred eeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEE
Confidence 35689999999999999999999999887 567888766642 2 2246889999999999999999999999999999
Q ss_pred EEECCChhhHHHH-HHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC---------HhHHHhhhCCCcCCCCce-EEEEec
Q 029446 91 VVDSLDRERIGKA-KQEFQAIIKDPFMLNSVILVFANKQDMKGAMT---------PMEVCEGLGLFDLKNRKW-HIQGTC 159 (193)
Q Consensus 91 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~---------~~~~~~~~~~~~~~~~~~-~~~~~S 159 (193)
|||++++.+|+.+ ..|+..+.... ++.|+|+|+||+|+..... ...+..+.+...++..++ +|++||
T Consensus 91 VyDit~~~Sf~~~~~~w~~~i~~~~--~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtS 168 (232)
T cd04174 91 CFDISRPETVDSALKKWKAEIMDYC--PSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLECS 168 (232)
T ss_pred EEECCChHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEcc
Confidence 9999999999985 67777776532 5789999999999864210 011212222223345566 699999
Q ss_pred cccCC-CHHHHHHHHHHHHHhhh
Q 029446 160 ALKGD-GLYEGLDWLASTLKEMR 181 (193)
Q Consensus 160 a~~~~-gi~~~~~~l~~~~~~~~ 181 (193)
|++|+ ||+++|..+...+.++.
T Consensus 169 Aktg~~~V~e~F~~~~~~~~~~~ 191 (232)
T cd04174 169 AFTSEKSIHSIFRSASLLCLNKL 191 (232)
T ss_pred CCcCCcCHHHHHHHHHHHHHHhc
Confidence 99998 89999999999887653
No 31
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=100.00 E-value=3.4e-33 Score=196.93 Aligned_cols=160 Identities=19% Similarity=0.370 Sum_probs=129.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEEE--EEE------------cCEEEEEEecCCCCCCHHhHHh
Q 029446 16 SEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVEK--VQY------------KNVIFTVWDVGGQEKLRPLWRH 80 (193)
Q Consensus 16 ~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~--~~~------------~~~~~~i~D~~g~~~~~~~~~~ 80 (193)
+.+||+++|++|+|||||++++.++.+. .+.+|.+.++.. +.. ..+.+.+||+||++++...+..
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 82 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTA 82 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHH
Confidence 5689999999999999999999998887 456787766543 222 2478999999999999999999
Q ss_pred hhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcCCCCceEEEEe
Q 029446 81 YFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGT 158 (193)
Q Consensus 81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 158 (193)
+++++|++++|||++++++|+.+..|+..+......++.|+++|+||+|+.+.. ..++. ..+ ++..+++++++
T Consensus 83 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~-~~~----~~~~~~~~~e~ 157 (180)
T cd04127 83 FFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQA-KAL----ADKYGIPYFET 157 (180)
T ss_pred HhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHH-HHH----HHHcCCeEEEE
Confidence 999999999999999999999999999888665444678999999999987542 22222 222 12334589999
Q ss_pred ccccCCCHHHHHHHHHHHHHhh
Q 029446 159 CALKGDGLYEGLDWLASTLKEM 180 (193)
Q Consensus 159 Sa~~~~gi~~~~~~l~~~~~~~ 180 (193)
||++|.|+++++++|.+.+.++
T Consensus 158 Sak~~~~v~~l~~~l~~~~~~~ 179 (180)
T cd04127 158 SAATGTNVEKAVERLLDLVMKR 179 (180)
T ss_pred eCCCCCCHHHHHHHHHHHHHhh
Confidence 9999999999999999887653
No 32
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=100.00 E-value=4.3e-32 Score=191.78 Aligned_cols=167 Identities=48% Similarity=0.816 Sum_probs=135.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEEEEE-----cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEE
Q 029446 16 SEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQY-----KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIY 90 (193)
Q Consensus 16 ~~~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~-----~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 90 (193)
+.+||+++|++|||||||++++..+.+..+.||.+.+...+.. ..+.+.+|||||++++...+..+++++|++++
T Consensus 2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 81 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVF 81 (183)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcCCcCCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEE
Confidence 4689999999999999999999988877667777766554433 46899999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcC-CCCceEEEEeccccCCCHHHH
Q 029446 91 VVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDL-KNRKWHIQGTCALKGDGLYEG 169 (193)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~gi~~~ 169 (193)
|+|++++.+++....++..+.......+.|+++|+||+|+.+.....++...+..... ....++++++||++++|++++
T Consensus 82 v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l 161 (183)
T cd04152 82 VVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQEG 161 (183)
T ss_pred EEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccCCHHHHHHHhCccccCCCCceEEEEeecccCCCHHHH
Confidence 9999999999998888887766544467999999999998765455555544443222 223467999999999999999
Q ss_pred HHHHHHHHHhhhc
Q 029446 170 LDWLASTLKEMRA 182 (193)
Q Consensus 170 ~~~l~~~~~~~~~ 182 (193)
+++|.+.+.+.+.
T Consensus 162 ~~~l~~~l~~~~~ 174 (183)
T cd04152 162 LEKLYEMILKRRK 174 (183)
T ss_pred HHHHHHHHHHHHh
Confidence 9999998876553
No 33
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=100.00 E-value=3.6e-33 Score=198.42 Aligned_cols=168 Identities=20% Similarity=0.254 Sum_probs=132.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccc-cccccceeEE-EEEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEEC
Q 029446 19 RVVMLGLDAAGKTTILYKLHIGEVLS-TVPTIGFNVE-KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDS 94 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~-~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~ 94 (193)
||+++|.+|+|||||+++|..+.+.. +.+|.+..+. .+.. ..+.+.+|||||++++...+..+++++|++++|||+
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~ 80 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSI 80 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEEC
Confidence 58999999999999999999888764 5566664432 2233 346789999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHcCCC--CCCCeEEEEEeCCCCCCCCCH-hHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHH
Q 029446 95 LDRERIGKAKQEFQAIIKDPF--MLNSVILVFANKQDMKGAMTP-MEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLD 171 (193)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~ 171 (193)
+++.+|+.+..|+..+..... ..+.|+|+|+||+|+.+.... .+....+ .+..+++++++||++|.|++++|+
T Consensus 81 ~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~----~~~~~~~~~e~SAk~~~~v~~l~~ 156 (190)
T cd04144 81 TSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAAL----ARRLGCEFIEASAKTNVNVERAFY 156 (190)
T ss_pred CCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHH----HHHhCCEEEEecCCCCCCHHHHHH
Confidence 999999999999888765322 357899999999998653221 1111111 223445899999999999999999
Q ss_pred HHHHHHHhhhccCCCCCCc
Q 029446 172 WLASTLKEMRAAGYSSVGT 190 (193)
Q Consensus 172 ~l~~~~~~~~~~~~~~~~~ 190 (193)
++.+.+.+++..+.+++..
T Consensus 157 ~l~~~l~~~~~~~~~~~~~ 175 (190)
T cd04144 157 TLVRALRQQRQGGQGPKGG 175 (190)
T ss_pred HHHHHHHHhhcccCCCcCC
Confidence 9999998888777665543
No 34
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=100.00 E-value=3.1e-32 Score=188.14 Aligned_cols=157 Identities=60% Similarity=1.072 Sum_probs=139.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEEEEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCChh
Q 029446 19 RVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE 98 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~ 98 (193)
||+++|.+|+|||||++++++.....+.+|.+.+...+.+....+.+||+||+..+...+..+++++|++++|+|+++++
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~~ 80 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSSDRE 80 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcCcceEEEEECCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEECCCHH
Confidence 68999999999999999999998777788999998888888999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHHHHHH
Q 029446 99 RIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAS 175 (193)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 175 (193)
++.....++..+.......+.|+++|+||+|+......+++.+.+.........++++++||++|.|+++++++|..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l~~ 157 (158)
T cd00878 81 RIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLDWLLQ 157 (158)
T ss_pred HHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccCHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHHHHhh
Confidence 99999999988877554568999999999999887667777777665544566789999999999999999999875
No 35
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=2.4e-32 Score=195.77 Aligned_cols=163 Identities=22% Similarity=0.264 Sum_probs=130.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE--EEEE---cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEE
Q 029446 18 MRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE--KVQY---KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYV 91 (193)
Q Consensus 18 ~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~---~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 91 (193)
+||+++|++|+|||||+++|.++.+. .+.+|.+.++. .+.. ..+.+.+||+||++++...+..++++++++++|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 68999999999999999999998876 45688876653 3333 367899999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHcC---CCCCCCeEEEEEeCCCCCC--CCCHhHHHhhhCCCcCCCCc-eEEEEeccccCCC
Q 029446 92 VDSLDRERIGKAKQEFQAIIKD---PFMLNSVILVFANKQDMKG--AMTPMEVCEGLGLFDLKNRK-WHIQGTCALKGDG 165 (193)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~---~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~g 165 (193)
||++++.+|+++..|+..+... ....+.|+++|+||+|+.+ ....++..+.. +..+ .++++|||++|+|
T Consensus 81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~e~Sak~~~~ 155 (201)
T cd04107 81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFC-----KENGFIGWFETSAKEGIN 155 (201)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHH-----HHcCCceEEEEeCCCCCC
Confidence 9999999999999888776542 1236789999999999973 22333332221 1222 4799999999999
Q ss_pred HHHHHHHHHHHHHhhhccCC
Q 029446 166 LYEGLDWLASTLKEMRAAGY 185 (193)
Q Consensus 166 i~~~~~~l~~~~~~~~~~~~ 185 (193)
++++|++|.+.+.+......
T Consensus 156 v~e~f~~l~~~l~~~~~~~~ 175 (201)
T cd04107 156 IEEAMRFLVKNILANDKNLQ 175 (201)
T ss_pred HHHHHHHHHHHHHHhchhhH
Confidence 99999999999887654433
No 36
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.7e-33 Score=183.04 Aligned_cols=165 Identities=18% Similarity=0.305 Sum_probs=136.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEEEEEE----cCEEEEEEecCCCCCCHHhHHhhhcCCCEEE
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVEKVQY----KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLI 89 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~~~~----~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (193)
++-+|++++|+..+|||||+.++.+..+. .+..|+|+++..-.. +.+++++|||.|+++|+.+.-.++++++++|
T Consensus 19 DymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfi 98 (193)
T KOG0093|consen 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFI 98 (193)
T ss_pred cceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEE
Confidence 46689999999999999999999999887 567888888653222 5689999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHH
Q 029446 90 YVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEG 169 (193)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~ 169 (193)
+|||+++.++|..+..|...+. ...+.+.|+|+|+||||+.++. -+..+-+...+...++.+|++||+.+.|++++
T Consensus 99 LmyDitNeeSf~svqdw~tqIk-tysw~naqvilvgnKCDmd~eR---vis~e~g~~l~~~LGfefFEtSaK~NinVk~~ 174 (193)
T KOG0093|consen 99 LMYDITNEESFNSVQDWITQIK-TYSWDNAQVILVGNKCDMDSER---VISHERGRQLADQLGFEFFETSAKENINVKQV 174 (193)
T ss_pred EEEecCCHHHHHHHHHHHHHhe-eeeccCceEEEEecccCCccce---eeeHHHHHHHHHHhChHHhhhcccccccHHHH
Confidence 9999999999999988888774 4466899999999999998752 12222222223344557999999999999999
Q ss_pred HHHHHHHHHhhhcc
Q 029446 170 LDWLASTLKEMRAA 183 (193)
Q Consensus 170 ~~~l~~~~~~~~~~ 183 (193)
|+.+...+.+....
T Consensus 175 Fe~lv~~Ic~kmse 188 (193)
T KOG0093|consen 175 FERLVDIICDKMSE 188 (193)
T ss_pred HHHHHHHHHHHhhh
Confidence 99999998876643
No 37
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=100.00 E-value=7.1e-32 Score=191.79 Aligned_cols=164 Identities=34% Similarity=0.616 Sum_probs=140.5
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEEEEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEE
Q 029446 14 GNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVD 93 (193)
Q Consensus 14 ~~~~~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 93 (193)
..+.++|+++|++|||||||++++.++.+..+.+|.+.+...+...+..+.+||+||+..++..+..+++++|++++|+|
T Consensus 16 ~~~~~ki~ilG~~~~GKStLi~~l~~~~~~~~~~T~~~~~~~i~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV~D 95 (190)
T cd00879 16 YNKEAKILFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELTIGNIKFKTFDLGGHEQARRLWKDYFPEVDGIVFLVD 95 (190)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCccCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEE
Confidence 35689999999999999999999999887777788888888888888999999999999999989999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcC-----------CCCceEEEEecccc
Q 029446 94 SLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDL-----------KNRKWHIQGTCALK 162 (193)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~Sa~~ 162 (193)
+++..+++....++..+.......+.|+++++||+|+......+++...++.... ....+++++|||++
T Consensus 96 ~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 175 (190)
T cd00879 96 AADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVFMCSVVK 175 (190)
T ss_pred CCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCHHHHHHHhCcccccccccccccccCceeEEEEEeEecC
Confidence 9999999988889998887655567999999999999876666777666654221 22446799999999
Q ss_pred CCCHHHHHHHHHHHH
Q 029446 163 GDGLYEGLDWLASTL 177 (193)
Q Consensus 163 ~~gi~~~~~~l~~~~ 177 (193)
++|++++|++|.+.+
T Consensus 176 ~~gv~e~~~~l~~~~ 190 (190)
T cd00879 176 RQGYGEAFRWLSQYL 190 (190)
T ss_pred CCChHHHHHHHHhhC
Confidence 999999999998753
No 38
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=100.00 E-value=3.6e-32 Score=188.92 Aligned_cols=154 Identities=36% Similarity=0.648 Sum_probs=132.7
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEEEEEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCChh
Q 029446 20 VVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE 98 (193)
Q Consensus 20 v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~ 98 (193)
|+++|++|+|||||++++.++.+. .+.||.+.....+....+++.+||+||+++++..+..+++++|++++|+|++++.
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~~~ 81 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNSVAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSADSE 81 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccccccCCcceEEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHH
Confidence 789999999999999999988765 4678888877777788899999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcC-CCCceEEEEecccc------CCCHHHHHH
Q 029446 99 RIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDL-KNRKWHIQGTCALK------GDGLYEGLD 171 (193)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~------~~gi~~~~~ 171 (193)
++.....|+..+.... .+.|+++|+||+|+.......++...+..... +..++++++|||++ ++||+++|+
T Consensus 82 s~~~~~~~l~~~~~~~--~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~~~~~ 159 (164)
T cd04162 82 RLPLARQELHQLLQHP--PDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVKDLLS 159 (164)
T ss_pred HHHHHHHHHHHHHhCC--CCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHHHHHH
Confidence 9999999888886543 68999999999999877666666555544433 56778899999998 999999999
Q ss_pred HHHH
Q 029446 172 WLAS 175 (193)
Q Consensus 172 ~l~~ 175 (193)
.++.
T Consensus 160 ~~~~ 163 (164)
T cd04162 160 QLIN 163 (164)
T ss_pred HHhc
Confidence 8864
No 39
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=1.2e-32 Score=198.36 Aligned_cols=165 Identities=23% Similarity=0.407 Sum_probs=132.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccceeEEE--EEE---cCEEEEEEecCCCCCCHHhHHhhhcCCCEEE
Q 029446 16 SEMRVVMLGLDAAGKTTILYKLHIGEVLS-TVPTIGFNVEK--VQY---KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLI 89 (193)
Q Consensus 16 ~~~~v~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~~--~~~---~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (193)
+++||+++|++|+|||||++++.++.+.. +.+|.+.++.. +.. ..+.+.+||++|++.+...+..+++++|+++
T Consensus 1 ~~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (211)
T cd04111 1 YQFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVL 80 (211)
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEE
Confidence 46899999999999999999999988764 45777766543 322 2478999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH-hHHHhhhCCCcCCCCceEEEEeccccCCCHHH
Q 029446 90 YVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP-MEVCEGLGLFDLKNRKWHIQGTCALKGDGLYE 168 (193)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 168 (193)
+|||++++++|+++..|+..+.........|+++|+||+|+.+.... .+....+ .+..+++++++||++|+|+++
T Consensus 81 lv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~----~~~~~~~~~e~Sak~g~~v~e 156 (211)
T cd04111 81 LVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKL----AKDLGMKYIETSARTGDNVEE 156 (211)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHH----HHHhCCEEEEEeCCCCCCHHH
Confidence 99999999999999999998876544456789999999998764221 1111222 123446899999999999999
Q ss_pred HHHHHHHHHHhhhccC
Q 029446 169 GLDWLASTLKEMRAAG 184 (193)
Q Consensus 169 ~~~~l~~~~~~~~~~~ 184 (193)
+|++|.+.+.++...+
T Consensus 157 ~f~~l~~~~~~~~~~~ 172 (211)
T cd04111 157 AFELLTQEIYERIKRG 172 (211)
T ss_pred HHHHHHHHHHHHhhcC
Confidence 9999999988776543
No 40
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=100.00 E-value=6.2e-32 Score=188.32 Aligned_cols=157 Identities=34% Similarity=0.610 Sum_probs=135.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEEEEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCChh
Q 029446 19 RVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE 98 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~ 98 (193)
+|+++|.+|||||||++++.+.....+.||.+.....+......+.+||+||+..++..+..+++++|++++|+|++++.
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~~~~~~~t~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~~ 80 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEIPKKVAPTVGFTPTKLRLDKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDDD 80 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCCccccCcccceEEEEEECCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEECCchh
Confidence 47999999999999999999874446778999888888888999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcC---CCCceEEEEeccccC------CCHHHH
Q 029446 99 RIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDL---KNRKWHIQGTCALKG------DGLYEG 169 (193)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~---~~~~~~~~~~Sa~~~------~gi~~~ 169 (193)
+++++..|+..+.+.....+.|+++|+||+|+.+.....++.+.+....+ ....+++++|||++| .|+++.
T Consensus 81 s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~g~~~~ 160 (167)
T cd04161 81 RVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDPSIVEG 160 (167)
T ss_pred HHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCccccCHHHH
Confidence 99999999999887655568999999999999887667777777665543 234567999999998 899999
Q ss_pred HHHHHH
Q 029446 170 LDWLAS 175 (193)
Q Consensus 170 ~~~l~~ 175 (193)
|+||..
T Consensus 161 ~~wl~~ 166 (167)
T cd04161 161 LRWLLA 166 (167)
T ss_pred HHHHhc
Confidence 999964
No 41
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=100.00 E-value=6.9e-33 Score=192.24 Aligned_cols=157 Identities=18% Similarity=0.262 Sum_probs=124.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccceeE-EEEEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEE
Q 029446 17 EMRVVMLGLDAAGKTTILYKLHIGEVLS-TVPTIGFNV-EKVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVV 92 (193)
Q Consensus 17 ~~~v~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~-~~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (193)
.+||+++|++|||||||++++..+.+.. +.+|.+..+ ..+.. ..+.+.+|||||++++...+..+++++|++++||
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (163)
T cd04136 1 EYKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhhhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence 3799999999999999999999988763 456665333 23333 3467889999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH-hHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHH
Q 029446 93 DSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP-MEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLD 171 (193)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~ 171 (193)
|++++.+++.+..|+..+.......+.|+++|+||+|+.+.... .+....+. +..+.+++++||++|.|++++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~~v~~l~~ 156 (163)
T cd04136 81 SITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALA----RQWGCPFYETSAKSKINVDEVFA 156 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHH----HHcCCeEEEecCCCCCCHHHHHH
Confidence 99999999999999888876544568999999999998753221 11111111 22336899999999999999999
Q ss_pred HHHHHH
Q 029446 172 WLASTL 177 (193)
Q Consensus 172 ~l~~~~ 177 (193)
++.+.+
T Consensus 157 ~l~~~~ 162 (163)
T cd04136 157 DLVRQI 162 (163)
T ss_pred HHHHhc
Confidence 998764
No 42
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=100.00 E-value=1e-32 Score=191.74 Aligned_cols=157 Identities=18% Similarity=0.248 Sum_probs=126.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccceeEE-EEEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEE
Q 029446 17 EMRVVMLGLDAAGKTTILYKLHIGEVLS-TVPTIGFNVE-KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVV 92 (193)
Q Consensus 17 ~~~v~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~-~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (193)
++||+++|.+|||||||++++..+.+.. +.+|.+..+. .+.. ..+.+.+|||||++.+...+..+++++|++++||
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVY 80 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEE
Confidence 4799999999999999999999887764 5567764433 3333 3567889999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH-hHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHH
Q 029446 93 DSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP-MEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLD 171 (193)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~ 171 (193)
|++++.+++.+..|+..+.......+.|+++|+||+|+.+.... .+....+ .+..+++++++||++|.|++++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~----~~~~~~~~~~~Sa~~~~~v~~~~~ 156 (164)
T cd04175 81 SITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNL----ARQWGCAFLETSAKAKINVNEIFY 156 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHH----HHHhCCEEEEeeCCCCCCHHHHHH
Confidence 99999999999999999876545578999999999999764221 1111111 122345899999999999999999
Q ss_pred HHHHHH
Q 029446 172 WLASTL 177 (193)
Q Consensus 172 ~l~~~~ 177 (193)
++.+++
T Consensus 157 ~l~~~l 162 (164)
T cd04175 157 DLVRQI 162 (164)
T ss_pred HHHHHh
Confidence 999876
No 43
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=100.00 E-value=7e-33 Score=194.38 Aligned_cols=158 Identities=20% Similarity=0.226 Sum_probs=122.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE-EEEEc--CEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEE
Q 029446 18 MRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE-KVQYK--NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVD 93 (193)
Q Consensus 18 ~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~-~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 93 (193)
+||+++|++|+|||||++++..+.+. .+.||.+..+. .+..+ .+.+.+||++|++++...+..+++++|++++|||
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d 81 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFS 81 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEEE
Confidence 69999999999999999999999885 56788876664 34443 4789999999999999999999999999999999
Q ss_pred CCChhhHHHHHH-HHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhH---------HHhhhCCCcCCCCc-eEEEEecccc
Q 029446 94 SLDRERIGKAKQ-EFQAIIKDPFMLNSVILVFANKQDMKGAMTPME---------VCEGLGLFDLKNRK-WHIQGTCALK 162 (193)
Q Consensus 94 ~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~---------~~~~~~~~~~~~~~-~~~~~~Sa~~ 162 (193)
++++++|+++.. |...+... . .+.|+|+|+||+|+.+.....+ +..+.+...++..+ ++|++|||++
T Consensus 82 ~~~~~s~~~~~~~w~~~i~~~-~-~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~t 159 (175)
T cd01874 82 VVSPSSFENVKEKWVPEITHH-C-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALT 159 (175)
T ss_pred CCCHHHHHHHHHHHHHHHHHh-C-CCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCC
Confidence 999999999975 65555432 2 5789999999999865421110 00011111122233 5899999999
Q ss_pred CCCHHHHHHHHHHHH
Q 029446 163 GDGLYEGLDWLASTL 177 (193)
Q Consensus 163 ~~gi~~~~~~l~~~~ 177 (193)
|+|++++|+.+++..
T Consensus 160 g~~v~~~f~~~~~~~ 174 (175)
T cd01874 160 QKGLKNVFDEAILAA 174 (175)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999998753
No 44
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=4.1e-33 Score=195.86 Aligned_cols=160 Identities=16% Similarity=0.174 Sum_probs=124.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE-EEE--EcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEE
Q 029446 17 EMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE-KVQ--YKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVV 92 (193)
Q Consensus 17 ~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~-~~~--~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (193)
++||+++|++|+|||||++++.++.+. .+.||.+..+. .+. ...+.+.+|||+|+++|..+++.+++++|++++||
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvf 80 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICF 80 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEE
Confidence 479999999999999999999999887 56688776553 222 34688999999999999999999999999999999
Q ss_pred ECCChhhHHHH-HHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC---------HhHHHhhhCCCcCCCCce-EEEEeccc
Q 029446 93 DSLDRERIGKA-KQEFQAIIKDPFMLNSVILVFANKQDMKGAMT---------PMEVCEGLGLFDLKNRKW-HIQGTCAL 161 (193)
Q Consensus 93 d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~---------~~~~~~~~~~~~~~~~~~-~~~~~Sa~ 161 (193)
|++++.+|+.+ ..|+..+.... ++.|+|+|+||+|+.+... ...+..+.+...++..++ +|++|||+
T Consensus 81 dit~~~Sf~~~~~~w~~~i~~~~--~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~ 158 (178)
T cd04131 81 DISRPETLDSVLKKWRGEIQEFC--PNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAF 158 (178)
T ss_pred ECCChhhHHHHHHHHHHHHHHHC--CCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccC
Confidence 99999999996 67777765532 5789999999999864200 001111112222344554 79999999
Q ss_pred cCCC-HHHHHHHHHHHHH
Q 029446 162 KGDG-LYEGLDWLASTLK 178 (193)
Q Consensus 162 ~~~g-i~~~~~~l~~~~~ 178 (193)
+|+| |+++|+.+.+...
T Consensus 159 ~~~~~v~~~F~~~~~~~~ 176 (178)
T cd04131 159 TSEKSVRDIFHVATMACL 176 (178)
T ss_pred cCCcCHHHHHHHHHHHHh
Confidence 9995 9999999998543
No 45
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=100.00 E-value=7.1e-32 Score=186.68 Aligned_cols=157 Identities=46% Similarity=0.843 Sum_probs=132.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEEEEE-cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCCh
Q 029446 19 RVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQY-KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDR 97 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~ 97 (193)
+|+++|++|+|||||++++.++.+..+.||.+.++..+.. ....+.+||+||+..+...+..++.++|++++|+|++++
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~ 80 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTTIPTVGFNVEMLQLEKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDE 80 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccccCccCcceEEEEeCCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCcH
Confidence 5899999999999999999999887777888877766655 458999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcC-CCCceEEEEeccccCCCHHHHHHHHHH
Q 029446 98 ERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDL-KNRKWHIQGTCALKGDGLYEGLDWLAS 175 (193)
Q Consensus 98 ~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 175 (193)
.++.....++..+++.....+.|+++|+||+|+......+++...+..... ...++++++|||++|+|+++++++|.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~i~~ 159 (160)
T cd04156 81 ARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFRKLAS 159 (160)
T ss_pred HHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcCHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHHHHHhc
Confidence 999999999988877544468999999999999766556666666543322 335678999999999999999999864
No 46
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=100.00 E-value=4.8e-33 Score=187.47 Aligned_cols=166 Identities=17% Similarity=0.234 Sum_probs=137.0
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEEE----EEEcCEEEEEEecCCCCCCHHhHHhhhcCCCE
Q 029446 13 FGNSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVEK----VQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDG 87 (193)
Q Consensus 13 ~~~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~----~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 87 (193)
.+..-+||++.|++|+|||||+|++.+..|. .+..|+|.++.+ ++...+-++||||+||++|+++.-.+++++|+
T Consensus 5 ~K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDc 84 (210)
T KOG0394|consen 5 RKRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADC 84 (210)
T ss_pred CcccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCce
Confidence 3456799999999999999999999999998 567899977654 33345789999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHcCCC---CCCCeEEEEEeCCCCCCCC---CHhHHHhhhCCCcCCCCceEEEEeccc
Q 029446 88 LIYVVDSLDRERIGKAKQEFQAIIKDPF---MLNSVILVFANKQDMKGAM---TPMEVCEGLGLFDLKNRKWHIQGTCAL 161 (193)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~p~ivv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (193)
+++|||++++.+|+++..|..+++.+.. ....|+||++||+|+.... ...+....... .+.++|||++|||
T Consensus 85 Cvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~---s~gnipyfEtSAK 161 (210)
T KOG0394|consen 85 CVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCK---SKGNIPYFETSAK 161 (210)
T ss_pred EEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHH---hcCCceeEEeccc
Confidence 9999999999999999999999998643 3457999999999987631 11122222211 2457799999999
Q ss_pred cCCCHHHHHHHHHHHHHhhh
Q 029446 162 KGDGLYEGLDWLASTLKEMR 181 (193)
Q Consensus 162 ~~~gi~~~~~~l~~~~~~~~ 181 (193)
.+.||++.|..+.+.+....
T Consensus 162 ~~~NV~~AFe~ia~~aL~~E 181 (210)
T KOG0394|consen 162 EATNVDEAFEEIARRALANE 181 (210)
T ss_pred ccccHHHHHHHHHHHHHhcc
Confidence 99999999999999887655
No 47
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=100.00 E-value=4.9e-32 Score=196.27 Aligned_cols=158 Identities=23% Similarity=0.317 Sum_probs=132.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEEEEEE----cCEEEEEEecCCCCCCHHhHHhhhcCCCEEE
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVEKVQY----KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLI 89 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~~~~----~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (193)
...+||+++|.+|+|||||++++..+.+. .+.+|++.++....+ ..+.+.+|||+|++++..++..++++++++|
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 90 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence 67799999999999999999999988876 467888877665433 3589999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCcCCCCceEEEEeccccCCCHHH
Q 029446 90 YVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT-PMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYE 168 (193)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 168 (193)
+|||++++.+++.+..|+..+.... .+.|+++|+||+|+..... .+++ .+ .+..+++|++|||++|.|+++
T Consensus 91 lvfD~~~~~s~~~i~~w~~~i~~~~--~~~piilvgNK~Dl~~~~v~~~~~--~~----~~~~~~~~~e~SAk~~~~i~~ 162 (219)
T PLN03071 91 IMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQV--TF----HRKKNLQYYEISAKSNYNFEK 162 (219)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhC--CCCcEEEEEEchhhhhccCCHHHH--HH----HHhcCCEEEEcCCCCCCCHHH
Confidence 9999999999999999988886542 5799999999999865322 2222 11 234556899999999999999
Q ss_pred HHHHHHHHHHhh
Q 029446 169 GLDWLASTLKEM 180 (193)
Q Consensus 169 ~~~~l~~~~~~~ 180 (193)
+|++|.+.+.+.
T Consensus 163 ~f~~l~~~~~~~ 174 (219)
T PLN03071 163 PFLYLARKLAGD 174 (219)
T ss_pred HHHHHHHHHHcC
Confidence 999999998754
No 48
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=100.00 E-value=2.4e-32 Score=190.38 Aligned_cols=158 Identities=22% Similarity=0.335 Sum_probs=128.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE--EEEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEE
Q 029446 16 SEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE--KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIY 90 (193)
Q Consensus 16 ~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 90 (193)
+.+||+++|++|+|||||++++.++.+. .+.+|.+.++. .+.. ..+.+.+||+||++.+...+..+++++|++++
T Consensus 2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~ 81 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (167)
T ss_pred cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEE
Confidence 5689999999999999999999999877 45677776653 3333 34689999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcCCCCceEEEEeccccCCCHHH
Q 029446 91 VVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYE 168 (193)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 168 (193)
|||++++++|+.+..|+..+... ...+.|+++|+||+|+.+.. ..++... + ++..+.+++++||++|.|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~-~----~~~~~~~~~~~Sa~~~~~v~~ 155 (167)
T cd01867 82 VYDITDEKSFENIRNWMRNIEEH-ASEDVERMLVGNKCDMEEKRVVSKEEGEA-L----ADEYGIKFLETSAKANINVEE 155 (167)
T ss_pred EEECcCHHHHHhHHHHHHHHHHh-CCCCCcEEEEEECcccccccCCCHHHHHH-H----HHHcCCEEEEEeCCCCCCHHH
Confidence 99999999999999988887654 23678999999999997542 2222222 1 123445899999999999999
Q ss_pred HHHHHHHHHHh
Q 029446 169 GLDWLASTLKE 179 (193)
Q Consensus 169 ~~~~l~~~~~~ 179 (193)
+|+++.+.+..
T Consensus 156 ~~~~i~~~~~~ 166 (167)
T cd01867 156 AFFTLAKDIKK 166 (167)
T ss_pred HHHHHHHHHHh
Confidence 99999998854
No 49
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=100.00 E-value=3e-32 Score=190.34 Aligned_cols=157 Identities=19% Similarity=0.283 Sum_probs=126.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEEE--EEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEE
Q 029446 19 RVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVEK--VQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVD 93 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~--~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 93 (193)
||+++|.+|+|||||++++.++.+. .+.||.+.++.. +.. ..+.+.+||+||++++...+..+++++|++++|+|
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 7999999999999999999999887 567888877643 323 35789999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH---hHHHhhhCCCcCCCCceEEEEeccccCCCHHHHH
Q 029446 94 SLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP---MEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGL 170 (193)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~ 170 (193)
++++++++.+..|+..+.+.......|+++|+||+|+.+.... ++....+ .+..+.+++++||++|.|++++|
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~~e~Sa~~g~~v~~lf 157 (170)
T cd04108 82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKL----AAEMQAEYWSVSALSGENVREFF 157 (170)
T ss_pred CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHH----HHHcCCeEEEEECCCCCCHHHHH
Confidence 9999999999999988866544346789999999998654221 1111111 12334579999999999999999
Q ss_pred HHHHHHHHh
Q 029446 171 DWLASTLKE 179 (193)
Q Consensus 171 ~~l~~~~~~ 179 (193)
+.|.+.+.+
T Consensus 158 ~~l~~~~~~ 166 (170)
T cd04108 158 FRVAALTFE 166 (170)
T ss_pred HHHHHHHHH
Confidence 999998754
No 50
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=100.00 E-value=5.9e-32 Score=190.68 Aligned_cols=161 Identities=16% Similarity=0.245 Sum_probs=127.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE--EEEEc--CEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEE
Q 029446 18 MRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE--KVQYK--NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVV 92 (193)
Q Consensus 18 ~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (193)
+||+++|+.|+|||||++++.++.+. .+.||.+.++. .+..+ .+.+.+||++|++++...+..+++++|++++||
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 58999999999999999999999887 47789987764 34443 478999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC---HhHHHhhhCCCcCCCCceEEEEeccccCCCHHHH
Q 029446 93 DSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT---PMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEG 169 (193)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~ 169 (193)
|++++.+++++..|+..+.... ....| |+|+||+|+..... .+.+. ......++..+.++++|||++|.|++++
T Consensus 81 D~t~~~s~~~i~~~~~~~~~~~-~~~~p-ilVgnK~Dl~~~~~~~~~~~~~-~~~~~~a~~~~~~~~e~SAk~g~~v~~l 157 (182)
T cd04128 81 DLTRKSTLNSIKEWYRQARGFN-KTAIP-ILVGTKYDLFADLPPEEQEEIT-KQARKYAKAMKAPLIFCSTSHSINVQKI 157 (182)
T ss_pred ECcCHHHHHHHHHHHHHHHHhC-CCCCE-EEEEEchhccccccchhhhhhH-HHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 9999999999999998886642 23566 68899999964211 11111 1111112344568999999999999999
Q ss_pred HHHHHHHHHhhh
Q 029446 170 LDWLASTLKEMR 181 (193)
Q Consensus 170 ~~~l~~~~~~~~ 181 (193)
|+++.+.+.+..
T Consensus 158 f~~l~~~l~~~~ 169 (182)
T cd04128 158 FKIVLAKAFDLP 169 (182)
T ss_pred HHHHHHHHHhcC
Confidence 999999886543
No 51
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=100.00 E-value=2.7e-31 Score=186.09 Aligned_cols=163 Identities=45% Similarity=0.820 Sum_probs=141.7
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEEEEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEE
Q 029446 13 FGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVV 92 (193)
Q Consensus 13 ~~~~~~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (193)
.....++|+++|++|+|||||++++.+..+..+.+|.+.+...+...+..+.+||+||+..+...+..+++++|++++|+
T Consensus 10 ~~~~~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~~~~i~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 89 (173)
T cd04155 10 KSSEEPRILILGLDNAGKTTILKQLASEDISHITPTQGFNIKTVQSDGFKLNVWDIGGQRAIRPYWRNYFENTDCLIYVI 89 (173)
T ss_pred ccCCccEEEEEccCCCCHHHHHHHHhcCCCcccCCCCCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEE
Confidence 44568999999999999999999999988777778888888888888899999999999988888888899999999999
Q ss_pred ECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHHH
Q 029446 93 DSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDW 172 (193)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~ 172 (193)
|+++..++.....++..+.......++|+++++||+|+......+++.+.++........++++++||++|+|+++++++
T Consensus 90 D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~ 169 (173)
T cd04155 90 DSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPAEEIAEALNLHDLRDRTWHIQACSAKTGEGLQEGMNW 169 (173)
T ss_pred eCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCHHHHHHHcCCcccCCCeEEEEEeECCCCCCHHHHHHH
Confidence 99999889888888888776544467999999999999877667777777776655566677899999999999999999
Q ss_pred HHH
Q 029446 173 LAS 175 (193)
Q Consensus 173 l~~ 175 (193)
|.+
T Consensus 170 l~~ 172 (173)
T cd04155 170 VCK 172 (173)
T ss_pred Hhc
Confidence 975
No 52
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=100.00 E-value=3e-32 Score=189.57 Aligned_cols=156 Identities=20% Similarity=0.332 Sum_probs=125.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE--EEEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEE
Q 029446 18 MRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE--KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVV 92 (193)
Q Consensus 18 ~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (193)
+||+++|++|+|||||++++.++.+. .+.+|.+.++. .+.. ..+.+.+||+||++++...+..+++++|++++|+
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 79999999999999999999999886 45678776553 2322 3478999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHH
Q 029446 93 DSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT--PMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGL 170 (193)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~ 170 (193)
|++++++++++..|+..+... ...+.|+++|+||+|+.+... .++..+ + .+..+++++++||+++.|+++++
T Consensus 82 d~~~~~s~~~~~~~~~~i~~~-~~~~~piivv~nK~Dl~~~~~~~~~~~~~-~----~~~~~~~~~~~Sa~~~~gv~~l~ 155 (165)
T cd01865 82 DITNEESFNAVQDWSTQIKTY-SWDNAQVILVGNKCDMEDERVVSSERGRQ-L----ADQLGFEFFEASAKENINVKQVF 155 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHh-CCCCCCEEEEEECcccCcccccCHHHHHH-H----HHHcCCEEEEEECCCCCCHHHHH
Confidence 999999999999998887543 235789999999999976422 222211 1 12234589999999999999999
Q ss_pred HHHHHHHHh
Q 029446 171 DWLASTLKE 179 (193)
Q Consensus 171 ~~l~~~~~~ 179 (193)
++|.+.+.+
T Consensus 156 ~~l~~~~~~ 164 (165)
T cd01865 156 ERLVDIICD 164 (165)
T ss_pred HHHHHHHHh
Confidence 999987653
No 53
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=100.00 E-value=2.8e-32 Score=189.89 Aligned_cols=156 Identities=24% Similarity=0.382 Sum_probs=126.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE--EEEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEE
Q 029446 18 MRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE--KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVV 92 (193)
Q Consensus 18 ~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (193)
+||+++|++|+|||||+++++++.+. .+.+|.+.++. .+.. ....+.+|||||++.+...+..+++++|++++|+
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 58999999999999999999999876 45688876654 3333 4678999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHcCCC----CCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcCCCCceEEEEeccccCCCH
Q 029446 93 DSLDRERIGKAKQEFQAIIKDPF----MLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGL 166 (193)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~----~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 166 (193)
|++++.+++.+..|+..+..... ..+.|+++|+||+|+.+.. ..++... + .+..+.+++++||++|+|+
T Consensus 81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~-~----~~~~~~~~~~~Sa~~~~gi 155 (168)
T cd04119 81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRL-W----AESKGFKYFETSACTGEGV 155 (168)
T ss_pred ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHH-H----HHHcCCeEEEEECCCCCCH
Confidence 99999999999999988876433 2579999999999987421 2222221 1 1233458999999999999
Q ss_pred HHHHHHHHHHHH
Q 029446 167 YEGLDWLASTLK 178 (193)
Q Consensus 167 ~~~~~~l~~~~~ 178 (193)
++++++|.+.+.
T Consensus 156 ~~l~~~l~~~l~ 167 (168)
T cd04119 156 NEMFQTLFSSIV 167 (168)
T ss_pred HHHHHHHHHHHh
Confidence 999999998764
No 54
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=100.00 E-value=3.7e-32 Score=188.41 Aligned_cols=154 Identities=20% Similarity=0.315 Sum_probs=124.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE--EEEEc--CEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEE
Q 029446 18 MRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE--KVQYK--NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVV 92 (193)
Q Consensus 18 ~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (193)
+||+++|++|+|||||++++.++.+. .+.+|.+.++. .+... .+.+.+||++|++++...+..+++++|++++||
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 58999999999999999999999887 45788887654 34443 478899999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH-hHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHH
Q 029446 93 DSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP-MEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLD 171 (193)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~ 171 (193)
|++++++|+.+..|+..+... ...+.|+++|+||.|+...... .+....+ ++..+.++++|||++|.|++++|.
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~-~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~----~~~~~~~~~e~Sa~~~~~v~~~f~ 155 (161)
T cd04117 81 DISSERSYQHIMKWVSDVDEY-APEGVQKILIGNKADEEQKRQVGDEQGNKL----AKEYGMDFFETSACTNSNIKESFT 155 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECcccccccCCCHHHHHHH----HHHcCCEEEEEeCCCCCCHHHHHH
Confidence 999999999999998887654 2357999999999998764321 1222222 123345899999999999999999
Q ss_pred HHHHH
Q 029446 172 WLAST 176 (193)
Q Consensus 172 ~l~~~ 176 (193)
+|.+.
T Consensus 156 ~l~~~ 160 (161)
T cd04117 156 RLTEL 160 (161)
T ss_pred HHHhh
Confidence 99864
No 55
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=100.00 E-value=7e-32 Score=193.07 Aligned_cols=162 Identities=20% Similarity=0.332 Sum_probs=131.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE--EEEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEEE
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE--KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLI 89 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (193)
+..+||+++|++|+|||||++++.+..+. .+.+|.+.++. .+.. ..+.+.+||+||++.+...+..+++++++++
T Consensus 4 ~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~ii 83 (199)
T cd04110 4 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVI 83 (199)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEE
Confidence 45799999999999999999999998876 46688876654 3333 3468999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcCCCCceEEEEeccccCCCHH
Q 029446 90 YVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT--PMEVCEGLGLFDLKNRKWHIQGTCALKGDGLY 167 (193)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 167 (193)
+|+|++++++|+.+..|+..+.... ...|+++|+||+|+.+... .++..+ +. +..+++++++||++|.|++
T Consensus 84 lv~D~~~~~s~~~~~~~~~~i~~~~--~~~piivVgNK~Dl~~~~~~~~~~~~~-~~----~~~~~~~~e~Sa~~~~gi~ 156 (199)
T cd04110 84 VVYDVTNGESFVNVKRWLQEIEQNC--DDVCKVLVGNKNDDPERKVVETEDAYK-FA----GQMGISLFETSAKENINVE 156 (199)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccccCHHHHHH-HH----HHcCCEEEEEECCCCcCHH
Confidence 9999999999999999998876532 5789999999999876422 222221 11 2234689999999999999
Q ss_pred HHHHHHHHHHHhhhcc
Q 029446 168 EGLDWLASTLKEMRAA 183 (193)
Q Consensus 168 ~~~~~l~~~~~~~~~~ 183 (193)
++|++|.+.+......
T Consensus 157 ~lf~~l~~~~~~~~~~ 172 (199)
T cd04110 157 EMFNCITELVLRAKKD 172 (199)
T ss_pred HHHHHHHHHHHHhhhc
Confidence 9999999998876543
No 56
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=100.00 E-value=1.8e-31 Score=185.85 Aligned_cols=155 Identities=23% Similarity=0.350 Sum_probs=127.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEEEEEE----cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEE
Q 029446 18 MRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVEKVQY----KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVV 92 (193)
Q Consensus 18 ~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~~~~----~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (193)
+||+++|++|||||||++++..+.+. .+.+|.+..+....+ ..+.+.+|||+|++.+...+..++..+|++++||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 58999999999999999999987765 467888777655443 4588999999999999988889999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHHH
Q 029446 93 DSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDW 172 (193)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~ 172 (193)
|++++.+++.+..|+..+.... .+.|+++|+||+|+.......+.. .+ .+....+++++||++|+|++++|++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~--~~~piiiv~nK~Dl~~~~~~~~~~-~~----~~~~~~~~~e~Sa~~~~~v~~~f~~ 153 (166)
T cd00877 81 DVTSRVTYKNVPNWHRDLVRVC--GNIPIVLCGNKVDIKDRKVKAKQI-TF----HRKKNLQYYEISAKSNYNFEKPFLW 153 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC--CCCcEEEEEEchhcccccCCHHHH-HH----HHHcCCEEEEEeCCCCCChHHHHHH
Confidence 9999999999998888886643 389999999999987443222211 11 1234568999999999999999999
Q ss_pred HHHHHHh
Q 029446 173 LASTLKE 179 (193)
Q Consensus 173 l~~~~~~ 179 (193)
|.+.+.+
T Consensus 154 l~~~~~~ 160 (166)
T cd00877 154 LARKLLG 160 (166)
T ss_pred HHHHHHh
Confidence 9998864
No 57
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=100.00 E-value=4e-32 Score=196.06 Aligned_cols=164 Identities=16% Similarity=0.231 Sum_probs=127.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE-EEEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEE
Q 029446 17 EMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE-KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVV 92 (193)
Q Consensus 17 ~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~-~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (193)
.+||+|+|++|+|||||+++|..+.++ .+.||++.++. .+.. ..+.+.+|||+|++.|..+++.+++++|++++||
T Consensus 1 ~~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvf 80 (222)
T cd04173 1 RCKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICF 80 (222)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEE
Confidence 379999999999999999999999887 56788876664 2333 4688999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH-hH--------HHhhhCCCcCCCCc-eEEEEecccc
Q 029446 93 DSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP-ME--------VCEGLGLFDLKNRK-WHIQGTCALK 162 (193)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~~--------~~~~~~~~~~~~~~-~~~~~~Sa~~ 162 (193)
|++++++|+++..+|...+.. ..++.|+|+|+||+|+.+.... .+ +..+.+...++..+ .+|++|||++
T Consensus 81 dis~~~Sf~~i~~~w~~~~~~-~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~ 159 (222)
T cd04173 81 DISRPETLDSVLKKWQGETQE-FCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRS 159 (222)
T ss_pred ECCCHHHHHHHHHHHHHHHHh-hCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCc
Confidence 999999999997655544443 2367999999999999753110 00 11122222233455 3899999999
Q ss_pred CCC-HHHHHHHHHHHHHhhh
Q 029446 163 GDG-LYEGLDWLASTLKEMR 181 (193)
Q Consensus 163 ~~g-i~~~~~~l~~~~~~~~ 181 (193)
+++ |+++|+........+.
T Consensus 160 ~~~~V~~~F~~~~~~~~~~~ 179 (222)
T cd04173 160 SERSVRDVFHVATVASLGRG 179 (222)
T ss_pred CCcCHHHHHHHHHHHHHhcc
Confidence 985 9999999999776543
No 58
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=100.00 E-value=1.2e-31 Score=185.65 Aligned_cols=156 Identities=18% Similarity=0.234 Sum_probs=124.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE-EEEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEE
Q 029446 17 EMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE-KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVV 92 (193)
Q Consensus 17 ~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~-~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (193)
.+||+++|++|+|||||++++.++.+. .+.+|.+..+. .+.. ....+.+||+||++++...+..++++++++++|+
T Consensus 1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~ 80 (162)
T cd04138 1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF 80 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEE
Confidence 479999999999999999999998876 45566664442 2233 3466889999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHH
Q 029446 93 DSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT-PMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLD 171 (193)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~ 171 (193)
|++++.+++++..|+..+.+.....+.|+++|+||+|+.+... ..+..+.. +..+.+++++||++|.|++++|+
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l~~ 155 (162)
T cd04138 81 AINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQDLA-----KSYGIPYIETSAKTRQGVEEAFY 155 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccceecHHHHHHHH-----HHhCCeEEEecCCCCCCHHHHHH
Confidence 9999999999998888887654446899999999999876422 22221111 22345899999999999999999
Q ss_pred HHHHHH
Q 029446 172 WLASTL 177 (193)
Q Consensus 172 ~l~~~~ 177 (193)
++.+.+
T Consensus 156 ~l~~~~ 161 (162)
T cd04138 156 TLVREI 161 (162)
T ss_pred HHHHHh
Confidence 998754
No 59
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=100.00 E-value=4.7e-32 Score=188.30 Aligned_cols=156 Identities=20% Similarity=0.293 Sum_probs=123.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-cccccceeEE-EEEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEE
Q 029446 18 MRVVMLGLDAAGKTTILYKLHIGEVLS-TVPTIGFNVE-KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVD 93 (193)
Q Consensus 18 ~~v~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~-~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 93 (193)
+||+++|++|||||||++++.+..+.. +.+|.+..+. .+.. ..+.+.+|||||++++...+..+++++|++++|+|
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 80 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYS 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEE
Confidence 589999999999999999999988764 4455543322 2222 35788999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHH
Q 029446 94 SLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLD 171 (193)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~ 171 (193)
++++++++++..|+..+.+.....+.|+++|+||+|+.+.. ..++... + .+..+.+++++||++|.|++++++
T Consensus 81 ~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~-~----~~~~~~~~~~~Sa~~~~~i~~l~~ 155 (164)
T smart00173 81 ITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKE-L----ARQWGCPFLETSAKERVNVDEAFY 155 (164)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHH-H----HHHcCCEEEEeecCCCCCHHHHHH
Confidence 99999999999988887765444678999999999987642 2122111 1 122335899999999999999999
Q ss_pred HHHHHHH
Q 029446 172 WLASTLK 178 (193)
Q Consensus 172 ~l~~~~~ 178 (193)
+|.+.+.
T Consensus 156 ~l~~~~~ 162 (164)
T smart00173 156 DLVREIR 162 (164)
T ss_pred HHHHHHh
Confidence 9998764
No 60
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.9e-32 Score=188.67 Aligned_cols=166 Identities=21% Similarity=0.311 Sum_probs=138.9
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEEE----EEEcCEEEEEEecCCCCCCHHhHHhhhcCCCE
Q 029446 13 FGNSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVEK----VQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDG 87 (193)
Q Consensus 13 ~~~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~----~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 87 (193)
.-++-|||+++|++++|||-|+.++..+.|. +..+|.|+.+.+ +..+.++.+||||+||++|+...+.+++++.+
T Consensus 10 ~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvG 89 (222)
T KOG0087|consen 10 EYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVG 89 (222)
T ss_pred ccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccce
Confidence 3467899999999999999999999999998 667999988875 33467899999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCCHH
Q 029446 88 LIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLY 167 (193)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 167 (193)
+++|||+++..+|+++..|+.+++.. ...++++++|+||+||.+. +.+..+.+...++..+..++++||.++.|++
T Consensus 90 AllVYDITr~~Tfenv~rWL~ELRdh-ad~nivimLvGNK~DL~~l---raV~te~~k~~Ae~~~l~f~EtSAl~~tNVe 165 (222)
T KOG0087|consen 90 ALLVYDITRRQTFENVERWLKELRDH-ADSNIVIMLVGNKSDLNHL---RAVPTEDGKAFAEKEGLFFLETSALDATNVE 165 (222)
T ss_pred eEEEEechhHHHHHHHHHHHHHHHhc-CCCCeEEEEeecchhhhhc---cccchhhhHhHHHhcCceEEEecccccccHH
Confidence 99999999999999999999998765 4479999999999999873 1111111112223444589999999999999
Q ss_pred HHHHHHHHHHHhhhc
Q 029446 168 EGLDWLASTLKEMRA 182 (193)
Q Consensus 168 ~~~~~l~~~~~~~~~ 182 (193)
++|+.+...++....
T Consensus 166 ~aF~~~l~~I~~~vs 180 (222)
T KOG0087|consen 166 KAFERVLTEIYKIVS 180 (222)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999888876554
No 61
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=100.00 E-value=8.1e-32 Score=194.87 Aligned_cols=159 Identities=21% Similarity=0.273 Sum_probs=127.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEEE--EEE---cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEE
Q 029446 18 MRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVEK--VQY---KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYV 91 (193)
Q Consensus 18 ~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~--~~~---~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 91 (193)
+||+++|++|+|||||+++|.++.+. .+.+|.+.++.. +.. ..+.+.+||++|++.+...+..+++++|++++|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 58999999999999999999998887 467888866543 333 257899999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHcCCC--CCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCcCCCCceEEEEeccccCCCHHH
Q 029446 92 VDSLDRERIGKAKQEFQAIIKDPF--MLNSVILVFANKQDMKGAMT-PMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYE 168 (193)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 168 (193)
||++++++|+.+..|+..+.+... ..+.|+++|+||+|+.+... ..+..+.+ .+..+++++++||++|+|+++
T Consensus 81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~----~~~~~~~~~~iSAktg~gv~~ 156 (215)
T cd04109 81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARF----AQANGMESCLVSAKTGDRVNL 156 (215)
T ss_pred EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHH----HHHcCCEEEEEECCCCCCHHH
Confidence 999999999999988888765422 24578999999999974321 11111222 122345799999999999999
Q ss_pred HHHHHHHHHHhh
Q 029446 169 GLDWLASTLKEM 180 (193)
Q Consensus 169 ~~~~l~~~~~~~ 180 (193)
+|+++.+.+...
T Consensus 157 lf~~l~~~l~~~ 168 (215)
T cd04109 157 LFQQLAAELLGV 168 (215)
T ss_pred HHHHHHHHHHhc
Confidence 999999988754
No 62
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=100.00 E-value=6e-32 Score=187.70 Aligned_cols=156 Identities=17% Similarity=0.235 Sum_probs=124.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE-E--EEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEE
Q 029446 17 EMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE-K--VQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVV 92 (193)
Q Consensus 17 ~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~-~--~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (193)
.+||+++|++|+|||||++++.++.+. .+.+|.+..+. . +....+.+.+|||||++++...+..+++++|++++|+
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 81 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLVF 81 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEEE
Confidence 489999999999999999999988765 44566554333 2 2223478999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHH
Q 029446 93 DSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT--PMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGL 170 (193)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~ 170 (193)
|++++.+++.+..|+..+.+.....+.|+++|+||+|+..... .++. ..+ .+..+++++++||++|.|++++|
T Consensus 82 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~-~~~----~~~~~~~~~~~Sa~~~~~i~~l~ 156 (164)
T cd04145 82 SVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEG-QEL----ARKLKIPYIETSAKDRLNVDKAF 156 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHH-HHH----HHHcCCcEEEeeCCCCCCHHHHH
Confidence 9999999999999988887654446789999999999876422 2222 111 12334589999999999999999
Q ss_pred HHHHHHH
Q 029446 171 DWLASTL 177 (193)
Q Consensus 171 ~~l~~~~ 177 (193)
++|.+.+
T Consensus 157 ~~l~~~~ 163 (164)
T cd04145 157 HDLVRVI 163 (164)
T ss_pred HHHHHhh
Confidence 9998765
No 63
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=100.00 E-value=1e-31 Score=187.04 Aligned_cols=156 Identities=23% Similarity=0.365 Sum_probs=125.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE--EEEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEE
Q 029446 17 EMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE--KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYV 91 (193)
Q Consensus 17 ~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 91 (193)
.+||+++|++|+|||||++++.++.+. .+.+|.+.++. .+.. ....+.+||+||++++...+..+++++|++++|
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v 81 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 81 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence 489999999999999999999998876 44577765543 3333 346899999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcCCCCceEEEEeccccCCCHHHH
Q 029446 92 VDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT--PMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEG 169 (193)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~ 169 (193)
||++++++++++..|+..+.... ..+.|+++|+||+|+..... .++.. .+ .+..+++++++||++|+|++++
T Consensus 82 ~d~~~~~s~~~l~~~~~~~~~~~-~~~~~~iiv~nK~Dl~~~~~~~~~~~~-~~----~~~~~~~~~~~Sa~~~~~v~~~ 155 (166)
T cd01869 82 YDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTDKRVVDYSEAQ-EF----ADELGIPFLETSAKNATNVEQA 155 (166)
T ss_pred EECcCHHHHHhHHHHHHHHHHhC-CCCCcEEEEEEChhcccccCCCHHHHH-HH----HHHcCCeEEEEECCCCcCHHHH
Confidence 99999999999999988876542 35789999999999865422 22221 11 1234568999999999999999
Q ss_pred HHHHHHHHH
Q 029446 170 LDWLASTLK 178 (193)
Q Consensus 170 ~~~l~~~~~ 178 (193)
++.|.+.+.
T Consensus 156 ~~~i~~~~~ 164 (166)
T cd01869 156 FMTMAREIK 164 (166)
T ss_pred HHHHHHHHH
Confidence 999998875
No 64
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=5.2e-32 Score=192.29 Aligned_cols=162 Identities=21% Similarity=0.234 Sum_probs=125.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccc-cccccceeEEE-EEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEEC
Q 029446 19 RVVMLGLDAAGKTTILYKLHIGEVLS-TVPTIGFNVEK-VQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDS 94 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~~-~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~ 94 (193)
||+++|++|+|||||++++.++.+.. +.||.+..+.. +.. ..+.+.+||++|++.+...+..+++++|++++|||+
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~dv 81 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFSV 81 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeEEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEEC
Confidence 79999999999999999999998874 56777666532 222 357899999999999999999999999999999999
Q ss_pred CChhhHHHHHH-HHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHH---------HhhhCCCcCCCC-ceEEEEeccccC
Q 029446 95 LDRERIGKAKQ-EFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEV---------CEGLGLFDLKNR-KWHIQGTCALKG 163 (193)
Q Consensus 95 ~~~~s~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~---------~~~~~~~~~~~~-~~~~~~~Sa~~~ 163 (193)
+++.+|+.+.. |+..+... ..+.|+++|+||+|+.+.....+. ....+...++.. .++|++|||++|
T Consensus 82 ~~~~sf~~~~~~~~~~i~~~--~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~ 159 (189)
T cd04134 82 DSPDSLENVESKWLGEIREH--CPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKLN 159 (189)
T ss_pred CCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCcC
Confidence 99999999874 66666543 257999999999999765322211 111111112222 258999999999
Q ss_pred CCHHHHHHHHHHHHHhhhc
Q 029446 164 DGLYEGLDWLASTLKEMRA 182 (193)
Q Consensus 164 ~gi~~~~~~l~~~~~~~~~ 182 (193)
+|++++|+++.+.+.....
T Consensus 160 ~~v~e~f~~l~~~~~~~~~ 178 (189)
T cd04134 160 RGVNEAFTEAARVALNVRP 178 (189)
T ss_pred CCHHHHHHHHHHHHhcccc
Confidence 9999999999998875443
No 65
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=2.2e-32 Score=180.83 Aligned_cols=167 Identities=21% Similarity=0.349 Sum_probs=140.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccceeEEE----E-EEcCEEEEEEecCCCCCCHHhHHhhhcCCCEE
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHIGEVLS-TVPTIGFNVEK----V-QYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGL 88 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~~----~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 88 (193)
.++|+++++|+.-+|||||+..++.+.+.+ ..||+|+++.. + ....+++++|||+||++|++++.+|+++.-++
T Consensus 6 ~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgv 85 (213)
T KOG0091|consen 6 HYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGV 85 (213)
T ss_pred EEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccce
Confidence 378999999999999999999999999985 46999988642 2 23578999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHcCCCCCCCeE-EEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCCHH
Q 029446 89 IYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVI-LVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLY 167 (193)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~-ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 167 (193)
++|||+++..+|+.+..|+++.......+.+++ .+|++|+|+... +++..+.+...+..++..++++||++|.||+
T Consensus 86 llvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~Sq---RqVt~EEaEklAa~hgM~FVETSak~g~NVe 162 (213)
T KOG0091|consen 86 LLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQ---RQVTAEEAEKLAASHGMAFVETSAKNGCNVE 162 (213)
T ss_pred EEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhh---ccccHHHHHHHHHhcCceEEEecccCCCcHH
Confidence 999999999999999999999877655455555 599999999865 3333333333346677799999999999999
Q ss_pred HHHHHHHHHHHhhhccC
Q 029446 168 EGLDWLASTLKEMRAAG 184 (193)
Q Consensus 168 ~~~~~l~~~~~~~~~~~ 184 (193)
+.|..|.+.+......|
T Consensus 163 EAF~mlaqeIf~~i~qG 179 (213)
T KOG0091|consen 163 EAFDMLAQEIFQAIQQG 179 (213)
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 99999999888776653
No 66
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=100.00 E-value=9.9e-32 Score=186.98 Aligned_cols=155 Identities=17% Similarity=0.203 Sum_probs=121.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEEE-E--EEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEE
Q 029446 18 MRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVEK-V--QYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVD 93 (193)
Q Consensus 18 ~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~-~--~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 93 (193)
+||+++|++|+|||||++++.++.+. .+.+|.+..+.. + ....+.+.+||+||++++...+..+++.++++++|||
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d 81 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYS 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEE
Confidence 79999999999999999999998876 445666644432 2 2245789999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHcCC--CCCCCeEEEEEeCCCCCCCCCH-hHHHhhhCCCcCCCCceEEEEeccccCCCHHHHH
Q 029446 94 SLDRERIGKAKQEFQAIIKDP--FMLNSVILVFANKQDMKGAMTP-MEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGL 170 (193)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~--~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~ 170 (193)
++++++++++..|+..+.... ..++.|+++|+||+|+.+.... .+....+ ....++++++|||++|+|++++|
T Consensus 82 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~----~~~~~~~~~e~SA~~g~~v~~~f 157 (165)
T cd04140 82 VTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAAC----ATEWNCAFMETSAKTNHNVQELF 157 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHH----HHHhCCcEEEeecCCCCCHHHHH
Confidence 999999999998887665421 2357899999999999763221 1111111 12334579999999999999999
Q ss_pred HHHHHH
Q 029446 171 DWLAST 176 (193)
Q Consensus 171 ~~l~~~ 176 (193)
++|.+.
T Consensus 158 ~~l~~~ 163 (165)
T cd04140 158 QELLNL 163 (165)
T ss_pred HHHHhc
Confidence 999764
No 67
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.98 E-value=7.3e-32 Score=187.19 Aligned_cols=157 Identities=18% Similarity=0.252 Sum_probs=123.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccee-EEEEEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEE
Q 029446 17 EMRVVMLGLDAAGKTTILYKLHIGEVLS-TVPTIGFN-VEKVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVV 92 (193)
Q Consensus 17 ~~~v~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~-~~~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (193)
.+||+++|.+|+|||||++++..+.+.. +.+|.+.. ...+.. ....+.+||+||++++...+..+++++|++++|+
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~ 80 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVY 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchhheEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEE
Confidence 4799999999999999999999988874 44555422 223333 3467889999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHh-HHHhhhCCCcCCCCceEEEEeccccCCCHHHHHH
Q 029446 93 DSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPM-EVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLD 171 (193)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~ 171 (193)
|++++.+|+++..|+..+.......+.|+++|+||+|+.+..... +....+. +..+.+++++||+++.|++++|.
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~~v~~l~~ 156 (163)
T cd04176 81 SLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALA----EEWGCPFMETSAKSKTMVNELFA 156 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHH----HHhCCEEEEecCCCCCCHHHHHH
Confidence 999999999999998888765444689999999999986532211 1112121 22345899999999999999999
Q ss_pred HHHHHH
Q 029446 172 WLASTL 177 (193)
Q Consensus 172 ~l~~~~ 177 (193)
++.+.+
T Consensus 157 ~l~~~l 162 (163)
T cd04176 157 EIVRQM 162 (163)
T ss_pred HHHHhc
Confidence 998754
No 68
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=5.6e-31 Score=169.92 Aligned_cols=178 Identities=58% Similarity=1.052 Sum_probs=167.8
Q ss_pred CchhHHHHhhhhcCCCccEEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEEEEEcCEEEEEEecCCCCCCHHhHHh
Q 029446 1 MGQAFRKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRH 80 (193)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~ 80 (193)
||--+.+++.+....++++++.+|-.++||||++.++..+....+.||+|+++.++.++.+.+.+||.+|++..+..|++
T Consensus 1 Mgn~~sk~~~k~f~~KE~~ilmlGLd~aGKTtiLyKLkl~~~~~~ipTvGFnvetVtykN~kfNvwdvGGqd~iRplWrh 80 (180)
T KOG0071|consen 1 MGNYMSKLLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRH 80 (180)
T ss_pred CcchHHHHHHHHhCcccceEEEEecccCCceehhhHHhcCCCcccccccceeEEEEEeeeeEEeeeeccCchhhhHHHHh
Confidence 66667777777777899999999999999999999999999888899999999999999999999999999999999999
Q ss_pred hhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEecc
Q 029446 81 YFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCA 160 (193)
Q Consensus 81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (193)
|+.+..++|||+|..+.+.+++....+..+++.++..+.|+++.+||-|+.+...++|+...+.+..++.+.+.+.++||
T Consensus 81 Yy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leLe~~r~~~W~vqp~~a 160 (180)
T KOG0071|consen 81 YYTGTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLELERIRDRNWYVQPSCA 160 (180)
T ss_pred hccCCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhccccccCCccEeecccc
Confidence 99999999999999999999999999999999888889999999999999999999999999999989999999999999
Q ss_pred ccCCCHHHHHHHHHHHHH
Q 029446 161 LKGDGLYEGLDWLASTLK 178 (193)
Q Consensus 161 ~~~~gi~~~~~~l~~~~~ 178 (193)
.+|.|+.+-+.|+.+.+.
T Consensus 161 ~~gdgL~eglswlsnn~~ 178 (180)
T KOG0071|consen 161 LSGDGLKEGLSWLSNNLK 178 (180)
T ss_pred ccchhHHHHHHHHHhhcc
Confidence 999999999999998763
No 69
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.98 E-value=9e-31 Score=182.36 Aligned_cols=157 Identities=36% Similarity=0.649 Sum_probs=130.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCc-------cccccccceeEEEEEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEE
Q 029446 19 RVVMLGLDAAGKTTILYKLHIGEV-------LSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYV 91 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~~~~-------~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 91 (193)
+|+++|++|+|||||++++.+... ..+.+|.+.+...+.+....+.+||+||+..+...+..+++++|++++|
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~v 80 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQESLRSLWDKYYAECHAIIYV 80 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEE
Confidence 589999999999999999976432 1346788888888888889999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCc--CCCCceEEEEeccccCCCHHHH
Q 029446 92 VDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFD--LKNRKWHIQGTCALKGDGLYEG 169 (193)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Sa~~~~gi~~~ 169 (193)
+|+++++++.....++..+.+.....+.|+++++||+|+.+.....+....+.... .....++++++||++|+|++++
T Consensus 81 vd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~ 160 (167)
T cd04160 81 IDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALSVEEIKEVFQDKAEEIGRRDCLVLPVSALEGTGVREG 160 (167)
T ss_pred EECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCCCHHHHHHHhccccccccCCceEEEEeeCCCCcCHHHH
Confidence 99999989999888888887765556899999999999987655555555443321 2335678999999999999999
Q ss_pred HHHHHH
Q 029446 170 LDWLAS 175 (193)
Q Consensus 170 ~~~l~~ 175 (193)
+++|.+
T Consensus 161 ~~~l~~ 166 (167)
T cd04160 161 IEWLVE 166 (167)
T ss_pred HHHHhc
Confidence 999864
No 70
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.98 E-value=2e-31 Score=189.60 Aligned_cols=159 Identities=25% Similarity=0.402 Sum_probs=127.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcc--ccccccceeEEE--EEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEE
Q 029446 18 MRVVMLGLDAAGKTTILYKLHIGEVL--STVPTIGFNVEK--VQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYV 91 (193)
Q Consensus 18 ~~v~v~G~~~~GKssli~~l~~~~~~--~~~~t~~~~~~~--~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 91 (193)
+||+++|++|+|||||++++.++.+. .+.+|.+.++.. +.. ..+.+.+|||||++++...+..+++++|++++|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 58999999999999999999998875 456777665543 333 357899999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHH
Q 029446 92 VDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEG 169 (193)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~ 169 (193)
+|++++++++++..|+..+... ...+.|+++|+||+|+.... ..++. +.+. +..+.+++++||++|+|++++
T Consensus 81 ~D~~~~~s~~~~~~~~~~i~~~-~~~~~piiiv~NK~Dl~~~~~~~~~~~-~~l~----~~~~~~~~e~Sa~~~~~v~~l 154 (191)
T cd04112 81 YDITNKASFDNIRAWLTEIKEY-AQEDVVIMLLGNKADMSGERVVKREDG-ERLA----KEYGVPFMETSAKTGLNVELA 154 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEEcccchhccccCHHHH-HHHH----HHcCCeEEEEeCCCCCCHHHH
Confidence 9999999999999988887654 23478999999999986432 22221 1221 233458999999999999999
Q ss_pred HHHHHHHHHhhhc
Q 029446 170 LDWLASTLKEMRA 182 (193)
Q Consensus 170 ~~~l~~~~~~~~~ 182 (193)
+++|.+.+.+...
T Consensus 155 ~~~l~~~~~~~~~ 167 (191)
T cd04112 155 FTAVAKELKHRKY 167 (191)
T ss_pred HHHHHHHHHHhcc
Confidence 9999999987753
No 71
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.98 E-value=2.7e-31 Score=188.51 Aligned_cols=162 Identities=23% Similarity=0.334 Sum_probs=129.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-cccccceeEE--EEEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEE
Q 029446 18 MRVVMLGLDAAGKTTILYKLHIGEVLS-TVPTIGFNVE--KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVV 92 (193)
Q Consensus 18 ~~v~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (193)
+||+++|++|+|||||++++.++.+.. +.+|.+.++. .+.. ..+.+.+||++|++.+...+..+++++|++++||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 589999999999999999999998874 6778776553 3333 3577899999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH-hHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHH
Q 029446 93 DSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP-MEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLD 171 (193)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~ 171 (193)
|++++++|+++..|+..+.... ..+.|+++|+||+|+.+.... .+....+. +..+++++++||+++.|++++|+
T Consensus 81 d~~~~~s~~~i~~~~~~i~~~~-~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~----~~~~~~~~evSa~~~~~i~~~f~ 155 (188)
T cd04125 81 DVTDQESFENLKFWINEINRYA-RENVIKVIVANKSDLVNNKVVDSNIAKSFC----DSLNIPFFETSAKQSINVEEAFI 155 (188)
T ss_pred ECcCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECCCCcccccCCHHHHHHHH----HHcCCeEEEEeCCCCCCHHHHHH
Confidence 9999999999999888876542 246899999999998754221 12222221 23345899999999999999999
Q ss_pred HHHHHHHhhhccC
Q 029446 172 WLASTLKEMRAAG 184 (193)
Q Consensus 172 ~l~~~~~~~~~~~ 184 (193)
++.+.+..+....
T Consensus 156 ~l~~~~~~~~~~~ 168 (188)
T cd04125 156 LLVKLIIKRLEEQ 168 (188)
T ss_pred HHHHHHHHHhhcC
Confidence 9999998766543
No 72
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.98 E-value=6.5e-32 Score=189.31 Aligned_cols=158 Identities=22% Similarity=0.262 Sum_probs=119.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE-EEEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEE
Q 029446 17 EMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE-KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVV 92 (193)
Q Consensus 17 ~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~-~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (193)
.+||+++|++|+|||||+.++..+.+. .+.||.+..+. .+.. ..+.+.+|||+|++.+...+..+++++|++|+||
T Consensus 1 ~~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (174)
T cd01871 1 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF 80 (174)
T ss_pred CeEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence 369999999999999999999998876 45677754432 2333 4578999999999999999999999999999999
Q ss_pred ECCChhhHHHHHH-HHHHHHcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhh--------hCCCcCCCCc-eEEEEeccc
Q 029446 93 DSLDRERIGKAKQ-EFQAIIKDPFMLNSVILVFANKQDMKGAMT-PMEVCEG--------LGLFDLKNRK-WHIQGTCAL 161 (193)
Q Consensus 93 d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~--------~~~~~~~~~~-~~~~~~Sa~ 161 (193)
|++++++|+++.. |+..+... .++.|+|+|+||+|+.+... .+.+... .+...++..+ .++++|||+
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~--~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 158 (174)
T cd01871 81 SLVSPASFENVRAKWYPEVRHH--CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL 158 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeccc
Confidence 9999999999974 65555443 25799999999999965321 1111110 0001112233 489999999
Q ss_pred cCCCHHHHHHHHHHH
Q 029446 162 KGDGLYEGLDWLAST 176 (193)
Q Consensus 162 ~~~gi~~~~~~l~~~ 176 (193)
+|+|++++|+.+.+.
T Consensus 159 ~~~~i~~~f~~l~~~ 173 (174)
T cd01871 159 TQKGLKTVFDEAIRA 173 (174)
T ss_pred ccCCHHHHHHHHHHh
Confidence 999999999999864
No 73
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.98 E-value=2e-30 Score=178.69 Aligned_cols=156 Identities=33% Similarity=0.635 Sum_probs=134.9
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEEEEEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCChh
Q 029446 20 VVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE 98 (193)
Q Consensus 20 v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~ 98 (193)
|+++|++|||||||++++.+..+. .+.||.+.+...+....+.+.+||+||+..++..+..+++.+|++++|+|+++..
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~ 81 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRKVTKGNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAADRT 81 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCCHH
Confidence 789999999999999999998877 5678888888877778899999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHHHHHH
Q 029446 99 RIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAS 175 (193)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 175 (193)
++.....++..+.......+.|+++|+||+|+.+.....+..+.+.........++++++|++++.|+++++++|.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 82 ALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQMNLKSITDREVSCYSISCKEKTNIDIVLDWLIK 158 (159)
T ss_pred HHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHHHHHHhCcccccCCceEEEEEEeccCCChHHHHHHHhh
Confidence 99888888888876544467899999999998876555566666655545556678999999999999999999875
No 74
>PLN03110 Rab GTPase; Provisional
Probab=99.98 E-value=3.3e-31 Score=191.68 Aligned_cols=163 Identities=21% Similarity=0.336 Sum_probs=132.6
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE--EEEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEE
Q 029446 14 GNSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE--KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGL 88 (193)
Q Consensus 14 ~~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 88 (193)
.++.+||+++|++|+|||||+++|.+..+. .+.+|.+.++. .+.. ..+.+.+||++|++++...+..++++++++
T Consensus 9 ~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~ 88 (216)
T PLN03110 9 YDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGA 88 (216)
T ss_pred cCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEE
Confidence 346789999999999999999999998876 56688887754 3433 347899999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH-hHHHhhhCCCcCCCCceEEEEeccccCCCHH
Q 029446 89 IYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP-MEVCEGLGLFDLKNRKWHIQGTCALKGDGLY 167 (193)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 167 (193)
++|||++++.+|+.+..|+..+... ...+.|+++|+||+|+...... .+....+. ...+++++++||++|.|++
T Consensus 89 ilv~d~~~~~s~~~~~~~~~~~~~~-~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~----~~~~~~~~e~SA~~g~~v~ 163 (216)
T PLN03110 89 LLVYDITKRQTFDNVQRWLRELRDH-ADSNIVIMMAGNKSDLNHLRSVAEEDGQALA----EKEGLSFLETSALEATNVE 163 (216)
T ss_pred EEEEECCChHHHHHHHHHHHHHHHh-CCCCCeEEEEEEChhcccccCCCHHHHHHHH----HHcCCEEEEEeCCCCCCHH
Confidence 9999999999999999998887654 2357999999999998654222 22223222 2345689999999999999
Q ss_pred HHHHHHHHHHHhhh
Q 029446 168 EGLDWLASTLKEMR 181 (193)
Q Consensus 168 ~~~~~l~~~~~~~~ 181 (193)
++|+.|.+.+.+..
T Consensus 164 ~lf~~l~~~i~~~~ 177 (216)
T PLN03110 164 KAFQTILLEIYHII 177 (216)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999887644
No 75
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.98 E-value=2.4e-31 Score=184.96 Aligned_cols=156 Identities=21% Similarity=0.382 Sum_probs=125.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEEE--EEEc--CEEEEEEecCCCCCCHHhHHhhhcCCCEEEE
Q 029446 16 SEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVEK--VQYK--NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIY 90 (193)
Q Consensus 16 ~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~--~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 90 (193)
+.+||+++|++|||||||++++.++.+. .+.+|.+.++.. +... ...+.+||+||+.++...+..++++++++++
T Consensus 2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 81 (165)
T cd01868 2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALL 81 (165)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEE
Confidence 4589999999999999999999998876 456777765543 3333 3689999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcCCCCceEEEEeccccCCCHHH
Q 029446 91 VVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYE 168 (193)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 168 (193)
|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.... ..++... +. +..+++++++||++|.|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~pi~vv~nK~Dl~~~~~~~~~~~~~-~~----~~~~~~~~~~Sa~~~~~v~~ 155 (165)
T cd01868 82 VYDITKKQTFENVERWLKELRDHA-DSNIVIMLVGNKSDLRHLRAVPTEEAKA-FA----EKNGLSFIETSALDGTNVEE 155 (165)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECccccccccCCHHHHHH-HH----HHcCCEEEEEECCCCCCHHH
Confidence 999999999999999888876542 2468999999999987532 2222222 21 12346899999999999999
Q ss_pred HHHHHHHHH
Q 029446 169 GLDWLASTL 177 (193)
Q Consensus 169 ~~~~l~~~~ 177 (193)
+++++.+.+
T Consensus 156 l~~~l~~~i 164 (165)
T cd01868 156 AFKQLLTEI 164 (165)
T ss_pred HHHHHHHHh
Confidence 999998875
No 76
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=2.3e-31 Score=174.25 Aligned_cols=167 Identities=22% Similarity=0.303 Sum_probs=139.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccceeEEE--EEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEEE
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHIGEVLS-TVPTIGFNVEK--VQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLI 89 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~~--~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (193)
++-+|++++|+.|+|||+|+.++..+++.+ ..+|+|+.+.. ++. +.++++||||+||++|++..+.|++++-+++
T Consensus 7 DyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAl 86 (214)
T KOG0086|consen 7 DYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGAL 86 (214)
T ss_pred hhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceE
Confidence 467899999999999999999999999884 56899888753 333 6789999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHH
Q 029446 90 YVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEG 169 (193)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~ 169 (193)
+|+|++++++|.++..|+.++... ..+++-+|+++||.|+.++. ++.-......++...+.+.++||++|+|+++.
T Consensus 87 LVYD~TsrdsfnaLtnWL~DaR~l-As~nIvviL~GnKkDL~~~R---~VtflEAs~FaqEnel~flETSa~TGeNVEEa 162 (214)
T KOG0086|consen 87 LVYDITSRDSFNALTNWLTDARTL-ASPNIVVILCGNKKDLDPER---EVTFLEASRFAQENELMFLETSALTGENVEEA 162 (214)
T ss_pred EEEeccchhhHHHHHHHHHHHHhh-CCCcEEEEEeCChhhcChhh---hhhHHHHHhhhcccceeeeeecccccccHHHH
Confidence 999999999999999999998654 44788999999999998763 33222222233455567999999999999999
Q ss_pred HHHHHHHHHhhhccCC
Q 029446 170 LDWLASTLKEMRAAGY 185 (193)
Q Consensus 170 ~~~l~~~~~~~~~~~~ 185 (193)
|-...+.+..+.+.|.
T Consensus 163 Fl~c~~tIl~kIE~GE 178 (214)
T KOG0086|consen 163 FLKCARTILNKIESGE 178 (214)
T ss_pred HHHHHHHHHHHHhhcC
Confidence 9999998887776554
No 77
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.98 E-value=3.9e-31 Score=184.47 Aligned_cols=158 Identities=21% Similarity=0.302 Sum_probs=126.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccceeEE--EEEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEE
Q 029446 16 SEMRVVMLGLDAAGKTTILYKLHIGEVLS-TVPTIGFNVE--KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIY 90 (193)
Q Consensus 16 ~~~~v~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 90 (193)
..+||+++|.+|+|||||++++.++.+.. +.+|.+.+.. .+.. ....+.+||+||++++...+..+++++|++++
T Consensus 3 ~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~ 82 (168)
T cd01866 3 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALL 82 (168)
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEE
Confidence 45899999999999999999999988763 4466665543 2333 35789999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcCCCCceEEEEeccccCCCHHH
Q 029446 91 VVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYE 168 (193)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 168 (193)
|+|++++.+++.+..|+..+.... .++.|+++|+||.|+.+.. ..++... + ++..+++++++||++++|+++
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~-~----~~~~~~~~~e~Sa~~~~~i~~ 156 (168)
T cd01866 83 VYDITRRETFNHLTSWLEDARQHS-NSNMTIMLIGNKCDLESRREVSYEEGEA-F----AKEHGLIFMETSAKTASNVEE 156 (168)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECcccccccCCCHHHHHH-H----HHHcCCEEEEEeCCCCCCHHH
Confidence 999999999999999998886542 3679999999999987532 2222222 1 123456899999999999999
Q ss_pred HHHHHHHHHHh
Q 029446 169 GLDWLASTLKE 179 (193)
Q Consensus 169 ~~~~l~~~~~~ 179 (193)
+|.++.+.+.+
T Consensus 157 ~~~~~~~~~~~ 167 (168)
T cd01866 157 AFINTAKEIYE 167 (168)
T ss_pred HHHHHHHHHHh
Confidence 99999988754
No 78
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.97 E-value=1.9e-31 Score=184.84 Aligned_cols=152 Identities=19% Similarity=0.311 Sum_probs=122.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEEE--EEE----cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEE
Q 029446 18 MRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVEK--VQY----KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIY 90 (193)
Q Consensus 18 ~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~--~~~----~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 90 (193)
+||+++|++|+|||||++++.++.+. .+.+|.+.++.. +.. ..+.+.+||+||++++...+..+++++|++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 58999999999999999999998876 456777776643 222 35789999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcCCCCceEEEEeccccCCCHHH
Q 029446 91 VVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT--PMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYE 168 (193)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 168 (193)
|+|++++++++.+..|+..+.... .+.|+++|+||+|+..... .++... + .+..+++++++||+++.|+++
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~v~~~~~~~-~----~~~~~~~~~~~Sa~~~~~v~~ 153 (162)
T cd04106 81 VFSTTDRESFEAIESWKEKVEAEC--GDIPMVLVQTKIDLLDQAVITNEEAEA-L----AKRLQLPLFRTSVKDDFNVTE 153 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhcccccCCCHHHHHH-H----HHHcCCeEEEEECCCCCCHHH
Confidence 999999999999999888875432 5799999999999876422 222211 1 123345899999999999999
Q ss_pred HHHHHHHH
Q 029446 169 GLDWLAST 176 (193)
Q Consensus 169 ~~~~l~~~ 176 (193)
++++|...
T Consensus 154 l~~~l~~~ 161 (162)
T cd04106 154 LFEYLAEK 161 (162)
T ss_pred HHHHHHHh
Confidence 99998764
No 79
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.97 E-value=1.7e-30 Score=180.12 Aligned_cols=155 Identities=15% Similarity=0.272 Sum_probs=122.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-cccccceeEEE----EEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEE
Q 029446 18 MRVVMLGLDAAGKTTILYKLHIGEVLS-TVPTIGFNVEK----VQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVV 92 (193)
Q Consensus 18 ~~v~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~~----~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (193)
+||+++|.+|+|||||++++.++.+.. +.++.+.+... +....+.+.+|||+|++++...+..+++++|++++|+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 589999999999999999999988764 34555544332 2224578999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHHH
Q 029446 93 DSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDW 172 (193)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~ 172 (193)
|++++.+++.+..|+..+.+. ..+.|+++|+||+|+.... ..+ ...+ .+..+++++++||++|.|++++++.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~--~~~~p~ivv~nK~Dl~~~~-~~~-~~~~----~~~~~~~~~~~Sa~~~~gv~~l~~~ 152 (161)
T cd04124 81 DVTRKITYKNLSKWYEELREY--RPEIPCIVVANKIDLDPSV-TQK-KFNF----AEKHNLPLYYVSAADGTNVVKLFQD 152 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHh--CCCCcEEEEEECccCchhH-HHH-HHHH----HHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 999999999998888887553 2478999999999985431 111 1111 1223468999999999999999999
Q ss_pred HHHHHHhh
Q 029446 173 LASTLKEM 180 (193)
Q Consensus 173 l~~~~~~~ 180 (193)
+.+.+.++
T Consensus 153 l~~~~~~~ 160 (161)
T cd04124 153 AIKLAVSY 160 (161)
T ss_pred HHHHHHhc
Confidence 99887654
No 80
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.97 E-value=1.8e-30 Score=180.57 Aligned_cols=155 Identities=22% Similarity=0.386 Sum_probs=123.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccceeE--EEEEEcC--EEEEEEecCCCCCCHHhHHhhhcCCCEEEE
Q 029446 16 SEMRVVMLGLDAAGKTTILYKLHIGEVLS-TVPTIGFNV--EKVQYKN--VIFTVWDVGGQEKLRPLWRHYFNNTDGLIY 90 (193)
Q Consensus 16 ~~~~v~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 90 (193)
+.+||+++|++|+|||||++++..+.+.. +.+|.+.++ ..+..++ ..+.+||+||++.+...+..+++.+|++++
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll 81 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII 81 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 56899999999999999999999888764 456665443 3444444 689999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcCCCCc-eEEEEeccccCCCHH
Q 029446 91 VVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT--PMEVCEGLGLFDLKNRK-WHIQGTCALKGDGLY 167 (193)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~ 167 (193)
|+|++++.+++.+..|+..+... ...+.|+++|+||+|+..... ..+... +. +..+ ..++++||++|.|++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-~~----~~~~~~~~~e~Sa~~~~~v~ 155 (165)
T cd01864 82 AYDITRRSSFESVPHWIEEVEKY-GASNVVLLLIGNKCDLEEQREVLFEEACT-LA----EKNGMLAVLETSAKESQNVE 155 (165)
T ss_pred EEECcCHHHHHhHHHHHHHHHHh-CCCCCcEEEEEECcccccccccCHHHHHH-HH----HHcCCcEEEEEECCCCCCHH
Confidence 99999999999999998888653 235789999999999876422 112111 11 1111 368999999999999
Q ss_pred HHHHHHHHH
Q 029446 168 EGLDWLAST 176 (193)
Q Consensus 168 ~~~~~l~~~ 176 (193)
++++.+.+.
T Consensus 156 ~~~~~l~~~ 164 (165)
T cd01864 156 EAFLLMATE 164 (165)
T ss_pred HHHHHHHHh
Confidence 999999875
No 81
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.97 E-value=4e-31 Score=182.42 Aligned_cols=153 Identities=12% Similarity=0.190 Sum_probs=114.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcccc-ccccceeEEEEEEcC--EEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEEC
Q 029446 18 MRVVMLGLDAAGKTTILYKLHIGEVLST-VPTIGFNVEKVQYKN--VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDS 94 (193)
Q Consensus 18 ~~v~v~G~~~~GKssli~~l~~~~~~~~-~~t~~~~~~~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~ 94 (193)
+||+++|++|+|||||++++..+.+... .|+.+.....+..++ +.+.+||++|++.. .+++++|++++|||+
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~~~~-----~~~~~~~~~ilv~d~ 75 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEGGRFKKEVLVDGQSHLLLIRDEGGAPDA-----QFASWVDAVIFVFSL 75 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCccceEEEEEECCEEEEEEEEECCCCCch-----hHHhcCCEEEEEEEC
Confidence 5899999999999999999998887643 343333333444444 77999999999752 356889999999999
Q ss_pred CChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCC-CceEEEEeccccCCCHHHHHHHH
Q 029446 95 LDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKN-RKWHIQGTCALKGDGLYEGLDWL 173 (193)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~gi~~~~~~l 173 (193)
+++.+|+++..|+..+.......+.|+++|+||+|+.... .+++....+....+. ..++|++|||++|+||+++|+.+
T Consensus 76 ~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~-~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~~ 154 (158)
T cd04103 76 ENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESN-PRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQEA 154 (158)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcC-CcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHHH
Confidence 9999999999999988766444678999999999985321 111111111111122 24689999999999999999998
Q ss_pred HHH
Q 029446 174 AST 176 (193)
Q Consensus 174 ~~~ 176 (193)
.+.
T Consensus 155 ~~~ 157 (158)
T cd04103 155 AQK 157 (158)
T ss_pred Hhh
Confidence 864
No 82
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.97 E-value=3.3e-32 Score=177.21 Aligned_cols=159 Identities=19% Similarity=0.304 Sum_probs=132.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE--EEEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEE
Q 029446 18 MRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE--KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVV 92 (193)
Q Consensus 18 ~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (193)
++.+|+|++|+|||+|+.+|..+.|+ .|..|+|++.. ++.. ..++++|||++|+++|+.+...++++.+++++||
T Consensus 9 fkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vVY 88 (198)
T KOG0079|consen 9 FKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 88 (198)
T ss_pred HHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEEEE
Confidence 56789999999999999999999888 57788887764 4443 6799999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHHH
Q 029446 93 DSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDW 172 (193)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~ 172 (193)
|.++.+||.+...|++++.+.. +..|-++|+||.|..+..- +..+.+..++...++.+|++||++++|+++.|.-
T Consensus 89 DVTn~ESF~Nv~rWLeei~~nc--dsv~~vLVGNK~d~~~Rrv---V~t~dAr~~A~~mgie~FETSaKe~~NvE~mF~c 163 (198)
T KOG0079|consen 89 DVTNGESFNNVKRWLEEIRNNC--DSVPKVLVGNKNDDPERRV---VDTEDARAFALQMGIELFETSAKENENVEAMFHC 163 (198)
T ss_pred ECcchhhhHhHHHHHHHHHhcC--ccccceecccCCCCcccee---eehHHHHHHHHhcCchheehhhhhcccchHHHHH
Confidence 9999999999999999997653 5789999999999887521 1111112223466778999999999999999999
Q ss_pred HHHHHHhhh
Q 029446 173 LASTLKEMR 181 (193)
Q Consensus 173 l~~~~~~~~ 181 (193)
|.+++.+..
T Consensus 164 it~qvl~~k 172 (198)
T KOG0079|consen 164 ITKQVLQAK 172 (198)
T ss_pred HHHHHHHHH
Confidence 988876554
No 83
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.97 E-value=2.4e-30 Score=183.49 Aligned_cols=159 Identities=20% Similarity=0.245 Sum_probs=124.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE-EEEE---cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEE
Q 029446 18 MRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE-KVQY---KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVV 92 (193)
Q Consensus 18 ~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~-~~~~---~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (193)
+||+++|++|+|||||++++.++.+. .+.+|.+.++. .+.. ..+.+.+|||||++++...+..+++++|++++||
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~ 80 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLICY 80 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEEE
Confidence 48999999999999999999999887 45577666543 2333 3578999999999999999999999999999999
Q ss_pred ECCChhhHHHHHH-HHHHHHcCCCCCCCeEEEEEeCCCCCCCC------CHhHHHhhhCCCcCCCCce-EEEEeccccCC
Q 029446 93 DSLDRERIGKAKQ-EFQAIIKDPFMLNSVILVFANKQDMKGAM------TPMEVCEGLGLFDLKNRKW-HIQGTCALKGD 164 (193)
Q Consensus 93 d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~------~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 164 (193)
|++++.+|+++.. |+..+... ..+.|+|+|+||+|+.+.. ...+. +.+ ++..+. ++++|||++|.
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~v~~~~~-~~~----~~~~~~~~~~e~Sa~~~~ 153 (187)
T cd04132 81 AVDNPTSLDNVEDKWFPEVNHF--CPGTPIMLVGLKTDLRKDKNLDRKVTPAQA-ESV----AKKQGAFAYLECSAKTME 153 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEeChhhhhCccccCCcCHHHH-HHH----HHHcCCcEEEEccCCCCC
Confidence 9999999999875 55555432 2578999999999987532 11111 111 122333 79999999999
Q ss_pred CHHHHHHHHHHHHHhhhcc
Q 029446 165 GLYEGLDWLASTLKEMRAA 183 (193)
Q Consensus 165 gi~~~~~~l~~~~~~~~~~ 183 (193)
|++++|+.+.+.+......
T Consensus 154 ~v~~~f~~l~~~~~~~~~~ 172 (187)
T cd04132 154 NVEEVFDTAIEEALKKEGK 172 (187)
T ss_pred CHHHHHHHHHHHHHhhhhh
Confidence 9999999999998876643
No 84
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.5e-31 Score=174.60 Aligned_cols=160 Identities=21% Similarity=0.295 Sum_probs=133.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEEE--E--EEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEE
Q 029446 16 SEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVEK--V--QYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIY 90 (193)
Q Consensus 16 ~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~--~--~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 90 (193)
.-|||+++|+.|+|||+|++++..+.|+ ....|+|+++.. + ....++++||||+|+++|+++..+|++.++++|+
T Consensus 6 flfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahalil 85 (213)
T KOG0095|consen 6 FLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALIL 85 (213)
T ss_pred eeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEE
Confidence 4589999999999999999999999998 467899888653 3 3367899999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC-CCHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHH
Q 029446 91 VVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA-MTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEG 169 (193)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~ 169 (193)
++|++...+|+-+..|+.++-+.. ..+.--|+|+||.|+.+. +.++++.+++. +.....+.++||++.+|++.+
T Consensus 86 vydiscqpsfdclpewlreie~ya-n~kvlkilvgnk~d~~drrevp~qigeefs----~~qdmyfletsakea~nve~l 160 (213)
T KOG0095|consen 86 VYDISCQPSFDCLPEWLREIEQYA-NNKVLKILVGNKIDLADRREVPQQIGEEFS----EAQDMYFLETSAKEADNVEKL 160 (213)
T ss_pred EEecccCcchhhhHHHHHHHHHHh-hcceEEEeeccccchhhhhhhhHHHHHHHH----HhhhhhhhhhcccchhhHHHH
Confidence 999999999999999999987653 356677899999998876 33344444443 345557999999999999999
Q ss_pred HHHHHHHHHhh
Q 029446 170 LDWLASTLKEM 180 (193)
Q Consensus 170 ~~~l~~~~~~~ 180 (193)
|..+.-.+...
T Consensus 161 f~~~a~rli~~ 171 (213)
T KOG0095|consen 161 FLDLACRLISE 171 (213)
T ss_pred HHHHHHHHHHH
Confidence 99887766543
No 85
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.97 E-value=5.3e-31 Score=184.16 Aligned_cols=157 Identities=20% Similarity=0.367 Sum_probs=125.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE--EEEE--cCEEEEEEecCCCCCCH-HhHHhhhcCCCEEEE
Q 029446 17 EMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE--KVQY--KNVIFTVWDVGGQEKLR-PLWRHYFNNTDGLIY 90 (193)
Q Consensus 17 ~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~--~~~~~~i~D~~g~~~~~-~~~~~~~~~~d~~i~ 90 (193)
.+||+++|++|+|||||++++..+.+. .+.+|.+..+. .+.. ..+.+.+||++|+++++ ..+..+++++|++++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~ 81 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF 81 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence 589999999999999999999998876 45677766543 3333 34789999999999887 467888899999999
Q ss_pred EEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH-hHHHhhhCCCcCCCCceEEEEecccc---CCCH
Q 029446 91 VVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP-MEVCEGLGLFDLKNRKWHIQGTCALK---GDGL 166 (193)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~gi 166 (193)
|||++++.+++.+..|...+.......+.|+++|+||+|+...... .+....+. +..++++++|||++ +.++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~e~Sa~~~~~~~~i 157 (170)
T cd04115 82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFA----DAHSMPLFETSAKDPSENDHV 157 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHH----HHcCCcEEEEeccCCcCCCCH
Confidence 9999999999999999888876544467999999999998754321 22222222 23346899999999 8899
Q ss_pred HHHHHHHHHHH
Q 029446 167 YEGLDWLASTL 177 (193)
Q Consensus 167 ~~~~~~l~~~~ 177 (193)
+++|..+.+.+
T Consensus 158 ~~~f~~l~~~~ 168 (170)
T cd04115 158 EAIFMTLAHKL 168 (170)
T ss_pred HHHHHHHHHHh
Confidence 99999998776
No 86
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.97 E-value=6.5e-31 Score=182.08 Aligned_cols=154 Identities=21% Similarity=0.347 Sum_probs=122.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE--EEEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEE
Q 029446 18 MRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE--KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVV 92 (193)
Q Consensus 18 ~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (193)
+||+++|++|+|||||++++.++.+. .+.++.+..+. .+.. ....+.+||+||++.+...+..+++++|++++|+
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 68999999999999999999998876 44566665543 2333 3478999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHH
Q 029446 93 DSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT--PMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGL 170 (193)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~ 170 (193)
|+++++++..+..|+..+... ..++.|+++|+||+|+..... .++..... +..+++++++||+++.|+++++
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~-~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~~~ 154 (161)
T cd04113 81 DITNRTSFEALPTWLSDARAL-ASPNIVVILVGNKSDLADQREVTFLEASRFA-----QENGLLFLETSALTGENVEEAF 154 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEEchhcchhccCCHHHHHHHH-----HHcCCEEEEEECCCCCCHHHHH
Confidence 999999999999988877543 236899999999999875422 22222211 2234689999999999999999
Q ss_pred HHHHHHH
Q 029446 171 DWLASTL 177 (193)
Q Consensus 171 ~~l~~~~ 177 (193)
+++.+.+
T Consensus 155 ~~~~~~~ 161 (161)
T cd04113 155 LKCARSI 161 (161)
T ss_pred HHHHHhC
Confidence 9998753
No 87
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.97 E-value=2.1e-30 Score=184.71 Aligned_cols=151 Identities=23% Similarity=0.306 Sum_probs=124.7
Q ss_pred EcCCCCCHHHHHHHHhcCCcc-ccccccceeEEEEEE----cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCCh
Q 029446 23 LGLDAAGKTTILYKLHIGEVL-STVPTIGFNVEKVQY----KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDR 97 (193)
Q Consensus 23 ~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~~~~----~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~ 97 (193)
+|.+|||||||++++..+.+. .+.+|++.++....+ ..+.+.+|||+|+++|..++..+++++|++++|||++++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 599999999999999988886 467888877754432 468999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHHHHHHHH
Q 029446 98 ERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTL 177 (193)
Q Consensus 98 ~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~ 177 (193)
.+|+.+..|+..+.+.. .+.|+++|+||+|+.......+.. . ..+..+++|++|||++|+||+++|++|.+.+
T Consensus 81 ~S~~~i~~w~~~i~~~~--~~~piilvgNK~Dl~~~~v~~~~~-~----~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i 153 (200)
T smart00176 81 VTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDVKDRKVKAKSI-T----FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 153 (200)
T ss_pred HHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccCCHHHH-H----HHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 99999999888887643 579999999999986532211111 1 1234567899999999999999999999988
Q ss_pred Hhh
Q 029446 178 KEM 180 (193)
Q Consensus 178 ~~~ 180 (193)
.+.
T Consensus 154 ~~~ 156 (200)
T smart00176 154 IGD 156 (200)
T ss_pred Hhc
Confidence 764
No 88
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.97 E-value=1.9e-30 Score=184.84 Aligned_cols=162 Identities=20% Similarity=0.204 Sum_probs=125.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc--cccccceeEE--EEEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEE
Q 029446 18 MRVVMLGLDAAGKTTILYKLHIGEVLS--TVPTIGFNVE--KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYV 91 (193)
Q Consensus 18 ~~v~v~G~~~~GKssli~~l~~~~~~~--~~~t~~~~~~--~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 91 (193)
+||+++|++|+|||||+++|.++.+.. +.+|.+..+. .+.. ..+.+.+||++|++++...+..+++++|++++|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 589999999999999999999988863 6677776553 3343 346788999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHH
Q 029446 92 VDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT-PMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGL 170 (193)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~ 170 (193)
||++++.+++++..|+..+... ..+.|+++|+||+|+..... ..++.........+..+++++++||++++|+++++
T Consensus 81 ~d~~~~~s~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~ 158 (193)
T cd04118 81 YDLTDSSSFERAKFWVKELQNL--EEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELF 158 (193)
T ss_pred EECCCHHHHHHHHHHHHHHHhc--CCCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence 9999999999998888877553 24789999999999864321 11110000000112334579999999999999999
Q ss_pred HHHHHHHHhhh
Q 029446 171 DWLASTLKEMR 181 (193)
Q Consensus 171 ~~l~~~~~~~~ 181 (193)
+++.+.+.+..
T Consensus 159 ~~i~~~~~~~~ 169 (193)
T cd04118 159 QKVAEDFVSRA 169 (193)
T ss_pred HHHHHHHHHhc
Confidence 99999887654
No 89
>PLN03118 Rab family protein; Provisional
Probab=99.97 E-value=1.8e-30 Score=187.46 Aligned_cols=163 Identities=23% Similarity=0.365 Sum_probs=128.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccccccccceeEE--EEEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEE
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVE--KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIY 90 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~--~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 90 (193)
...+||+++|++|+|||||+++|.+..+..+.+|.+.++. .+.. ..+.+.+|||||++++...+..+++++|++++
T Consensus 12 ~~~~kv~ivG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vl 91 (211)
T PLN03118 12 DLSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGIIL 91 (211)
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEE
Confidence 4578999999999999999999999888777788876653 3333 34789999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHcC-CCCCCCeEEEEEeCCCCCCCCCH-hHHHhhhCCCcCCCCceEEEEeccccCCCHHH
Q 029446 91 VVDSLDRERIGKAKQEFQAIIKD-PFMLNSVILVFANKQDMKGAMTP-MEVCEGLGLFDLKNRKWHIQGTCALKGDGLYE 168 (193)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 168 (193)
|||++++++|+++..+|...+.. ....+.|+++|+||+|+...... .+....+ .+..+++++++||+++.|+++
T Consensus 92 v~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~----~~~~~~~~~e~SAk~~~~v~~ 167 (211)
T PLN03118 92 VYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMAL----AKEHGCLFLECSAKTRENVEQ 167 (211)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHH----HHHcCCEEEEEeCCCCCCHHH
Confidence 99999999999998765554442 23356899999999998754222 1111111 123345899999999999999
Q ss_pred HHHHHHHHHHhhh
Q 029446 169 GLDWLASTLKEMR 181 (193)
Q Consensus 169 ~~~~l~~~~~~~~ 181 (193)
+|++|.+.+.+..
T Consensus 168 l~~~l~~~~~~~~ 180 (211)
T PLN03118 168 CFEELALKIMEVP 180 (211)
T ss_pred HHHHHHHHHHhhh
Confidence 9999999887654
No 90
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.97 E-value=8.7e-31 Score=182.73 Aligned_cols=158 Identities=17% Similarity=0.216 Sum_probs=125.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE-EEEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEE
Q 029446 17 EMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE-KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVV 92 (193)
Q Consensus 17 ~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~-~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (193)
.+||+++|.+|||||||++++.++.+. .+.+|.+..+. .+.. ..+.+.+||+||++++...+..++++++++++|+
T Consensus 1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~ 80 (168)
T cd04177 1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY 80 (168)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence 479999999999999999999988876 45566664433 2333 3478899999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH-hHHHhhhCCCcCCCCc-eEEEEeccccCCCHHHHH
Q 029446 93 DSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP-MEVCEGLGLFDLKNRK-WHIQGTCALKGDGLYEGL 170 (193)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~~~ 170 (193)
|++++++++.+..|...+.......+.|+++++||+|+.+.... .+....+ .+..+ ++++++||+++.|++++|
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~----~~~~~~~~~~~~SA~~~~~i~~~f 156 (168)
T cd04177 81 SVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSL----SQQWGNVPFYETSARKRTNVDEVF 156 (168)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHH----HHHcCCceEEEeeCCCCCCHHHHH
Confidence 99999999999988888766444468999999999998754221 1111111 12223 589999999999999999
Q ss_pred HHHHHHHH
Q 029446 171 DWLASTLK 178 (193)
Q Consensus 171 ~~l~~~~~ 178 (193)
+++.+++.
T Consensus 157 ~~i~~~~~ 164 (168)
T cd04177 157 IDLVRQII 164 (168)
T ss_pred HHHHHHHh
Confidence 99998763
No 91
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.97 E-value=1.3e-30 Score=180.92 Aligned_cols=157 Identities=22% Similarity=0.397 Sum_probs=125.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE--EEEEc--CEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEE
Q 029446 18 MRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE--KVQYK--NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVV 92 (193)
Q Consensus 18 ~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (193)
+||+++|++|+|||||++++.+..+. .+.++.+.++. .+... .+.+.+||+||++.+...+..+++++|++++||
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 68999999999999999999988876 34566665543 34443 378999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHH
Q 029446 93 DSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT-PMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLD 171 (193)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~ 171 (193)
|++++.+++.+..|+..+..... .+.|+++|+||+|+..... ..+..+.+ .+..+++++++||++++|++++++
T Consensus 81 d~~~~~s~~~~~~~l~~~~~~~~-~~~pivvv~nK~D~~~~~~~~~~~~~~~----~~~~~~~~~e~Sa~~~~~i~~l~~ 155 (164)
T smart00175 81 DITNRESFENLKNWLKELREYAD-PNVVIMLVGNKSDLEDQRQVSREEAEAF----AEEHGLPFFETSAKTNTNVEEAFE 155 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEEchhcccccCCCHHHHHHH----HHHcCCeEEEEeCCCCCCHHHHHH
Confidence 99999999999988888765432 5899999999999876321 11222222 123456899999999999999999
Q ss_pred HHHHHHHh
Q 029446 172 WLASTLKE 179 (193)
Q Consensus 172 ~l~~~~~~ 179 (193)
+|.+.+.+
T Consensus 156 ~i~~~~~~ 163 (164)
T smart00175 156 ELAREILK 163 (164)
T ss_pred HHHHHHhh
Confidence 99998865
No 92
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.97 E-value=4.9e-31 Score=182.84 Aligned_cols=154 Identities=27% Similarity=0.400 Sum_probs=127.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEEEE--EE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEE
Q 029446 19 RVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVEKV--QY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVD 93 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~~--~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 93 (193)
||+++|++++|||||+++|.++.+. .+.+|.+.+.... .. ..+.+.+||++|++++...+..+++++|++++|||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 7999999999999999999999887 4567877666543 33 46789999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHH
Q 029446 94 SLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA--MTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLD 171 (193)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~ 171 (193)
++++.+|+++..|+..+..... .+.|+++++||.|+.+. ...++..+ + ++..+.+|+++||+++.|+.++|.
T Consensus 81 ~~~~~S~~~~~~~~~~i~~~~~-~~~~iivvg~K~D~~~~~~v~~~~~~~-~----~~~~~~~~~e~Sa~~~~~v~~~f~ 154 (162)
T PF00071_consen 81 VTDEESFENLKKWLEEIQKYKP-EDIPIIVVGNKSDLSDEREVSVEEAQE-F----AKELGVPYFEVSAKNGENVKEIFQ 154 (162)
T ss_dssp TTBHHHHHTHHHHHHHHHHHST-TTSEEEEEEETTTGGGGSSSCHHHHHH-H----HHHTTSEEEEEBTTTTTTHHHHHH
T ss_pred cccccccccccccccccccccc-ccccceeeeccccccccccchhhHHHH-H----HHHhCCEEEEEECCCCCCHHHHHH
Confidence 9999999999999998876543 57999999999998862 23222221 1 123335899999999999999999
Q ss_pred HHHHHHH
Q 029446 172 WLASTLK 178 (193)
Q Consensus 172 ~l~~~~~ 178 (193)
.+++.+.
T Consensus 155 ~~i~~i~ 161 (162)
T PF00071_consen 155 ELIRKIL 161 (162)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9999874
No 93
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.97 E-value=3.9e-30 Score=179.74 Aligned_cols=158 Identities=18% Similarity=0.254 Sum_probs=124.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccceeEE--EEEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEEE
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHIGEVLS-TVPTIGFNVE--KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLI 89 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (193)
...+||+++|++|+|||||++++.++.+.. +.++.+..+. .+.. ..+.+.+||+||++++...+..+++++|+++
T Consensus 3 ~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i 82 (170)
T cd04116 3 SSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCL 82 (170)
T ss_pred ceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEE
Confidence 467999999999999999999999888764 4577776543 3333 4578899999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHcCCC---CCCCeEEEEEeCCCCCCCC-CHhHHHhhhCCCcCCCCceEEEEeccccCCC
Q 029446 90 YVVDSLDRERIGKAKQEFQAIIKDPF---MLNSVILVFANKQDMKGAM-TPMEVCEGLGLFDLKNRKWHIQGTCALKGDG 165 (193)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~p~ivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 165 (193)
+|||++++.+++.+..|...+..... ..+.|+++|+||+|+.... ..++..+... +....+++++||++|.|
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~e~Sa~~~~~ 158 (170)
T cd04116 83 LTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCR----ENGDYPYFETSAKDATN 158 (170)
T ss_pred EEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHH----HCCCCeEEEEECCCCCC
Confidence 99999999999999988887765321 3568999999999986432 2233222111 01123799999999999
Q ss_pred HHHHHHHHHHH
Q 029446 166 LYEGLDWLAST 176 (193)
Q Consensus 166 i~~~~~~l~~~ 176 (193)
++++|+.+++.
T Consensus 159 v~~~~~~~~~~ 169 (170)
T cd04116 159 VAAAFEEAVRR 169 (170)
T ss_pred HHHHHHHHHhh
Confidence 99999999875
No 94
>PLN03108 Rab family protein; Provisional
Probab=99.97 E-value=3e-30 Score=185.97 Aligned_cols=161 Identities=19% Similarity=0.259 Sum_probs=129.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE--EEEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEEE
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE--KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLI 89 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (193)
.+.+||+++|++|+|||||++++.+..+. .+.+|++.++. .+.. ..+.+.+||++|++.+...+..+++++|+++
T Consensus 4 ~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~v 83 (210)
T PLN03108 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (210)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence 46799999999999999999999998776 35677776643 2333 3467899999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcCCCCceEEEEeccccCCCHH
Q 029446 90 YVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLY 167 (193)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 167 (193)
+|+|++++.+++.+..|+..+... ...+.|+++|+||+|+.+.. ..++..+. ++..+++++++||+++.|++
T Consensus 84 lv~D~~~~~s~~~l~~~~~~~~~~-~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~e~Sa~~~~~v~ 157 (210)
T PLN03108 84 LVYDITRRETFNHLASWLEDARQH-ANANMTIMLIGNKCDLAHRRAVSTEEGEQF-----AKEHGLIFMEASAKTAQNVE 157 (210)
T ss_pred EEEECCcHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECccCccccCCCHHHHHHH-----HHHcCCEEEEEeCCCCCCHH
Confidence 999999999999998888877543 23579999999999987632 22222221 12345689999999999999
Q ss_pred HHHHHHHHHHHhhh
Q 029446 168 EGLDWLASTLKEMR 181 (193)
Q Consensus 168 ~~~~~l~~~~~~~~ 181 (193)
++|+++.+.+.++.
T Consensus 158 e~f~~l~~~~~~~~ 171 (210)
T PLN03108 158 EAFIKTAAKIYKKI 171 (210)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999887654
No 95
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.97 E-value=1.7e-30 Score=168.99 Aligned_cols=166 Identities=30% Similarity=0.625 Sum_probs=157.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccceeEEEEEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEE
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHIGEVLS-TVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVD 93 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 93 (193)
..++.+.++|..++|||||+|....+++.+ ..||+|.+...+.-..+.+.+||.|||.+++..|..|++++++++||+|
T Consensus 18 k~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmrk~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~VD 97 (186)
T KOG0075|consen 18 KEEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYVVD 97 (186)
T ss_pred HheeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeEEeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEEee
Confidence 478999999999999999999999988885 5799999999999999999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHHHH
Q 029446 94 SLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 173 (193)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l 173 (193)
+.+++.+......+..++..+...++|+++.+||.|+........+.+++++.....+.+.+|.+||+...|++.+.+||
T Consensus 98 aad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~~li~rmgL~sitdREvcC~siScke~~Nid~~~~Wl 177 (186)
T KOG0075|consen 98 AADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKIALIERMGLSSITDREVCCFSISCKEKVNIDITLDWL 177 (186)
T ss_pred cCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccHHHHHHHhCccccccceEEEEEEEEcCCccHHHHHHHH
Confidence 99999999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred HHHHHhh
Q 029446 174 ASTLKEM 180 (193)
Q Consensus 174 ~~~~~~~ 180 (193)
+++-...
T Consensus 178 i~hsk~~ 184 (186)
T KOG0075|consen 178 IEHSKSL 184 (186)
T ss_pred HHHhhhh
Confidence 9987544
No 96
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.97 E-value=2e-30 Score=179.53 Aligned_cols=154 Identities=23% Similarity=0.329 Sum_probs=122.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE--EEEEc--CEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEE
Q 029446 18 MRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE--KVQYK--NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVV 92 (193)
Q Consensus 18 ~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (193)
+||+++|++|+|||||++++.+..+. .+.++.+.++. .+... ...+.+||+||++.+...+..+++.+|++++|+
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 58999999999999999999998876 44566665543 34333 367999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHH
Q 029446 93 DSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT-PMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLD 171 (193)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~ 171 (193)
|++++++++.+..|+..+..... .+.|+++++||+|+..... ..+....+. +..+++++++||+++.|++++++
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~-~~~~iilv~nK~D~~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~~v~~l~~ 155 (161)
T cd01861 81 DITNRQSFDNTDKWIDDVRDERG-NDVIIVLVGNKTDLSDKRQVSTEEGEKKA----KELNAMFIETSAKAGHNVKELFR 155 (161)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCC-CCCEEEEEEEChhccccCccCHHHHHHHH----HHhCCEEEEEeCCCCCCHHHHHH
Confidence 99999999999999998866432 3799999999999954321 222222221 23346899999999999999999
Q ss_pred HHHHH
Q 029446 172 WLAST 176 (193)
Q Consensus 172 ~l~~~ 176 (193)
++.+.
T Consensus 156 ~i~~~ 160 (161)
T cd01861 156 KIASA 160 (161)
T ss_pred HHHHh
Confidence 99875
No 97
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.97 E-value=2.4e-30 Score=179.50 Aligned_cols=155 Identities=26% Similarity=0.374 Sum_probs=125.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccceeEE--EEEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEE
Q 029446 17 EMRVVMLGLDAAGKTTILYKLHIGEVLS-TVPTIGFNVE--KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYV 91 (193)
Q Consensus 17 ~~~v~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 91 (193)
++||+++|++|+|||||++++.++.+.. +.+|.+..+. .+.. ....+.+||+||++++...+..+++++|++++|
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 80 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence 4799999999999999999999998875 6677775442 3334 457899999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHH
Q 029446 92 VDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEG 169 (193)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~ 169 (193)
+|++++++++....|+..+..... ...|+++++||+|+.+.. ..++..+.. +..+++++++||++|.|++++
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~l 154 (163)
T cd01860 81 YDITSEESFEKAKSWVKELQRNAS-PNIIIALVGNKADLESKRQVSTEEAQEYA-----DENGLLFFETSAKTGENVNEL 154 (163)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECccccccCcCCHHHHHHHH-----HHcCCEEEEEECCCCCCHHHH
Confidence 999999999999998888866533 679999999999987432 222222211 222358999999999999999
Q ss_pred HHHHHHHH
Q 029446 170 LDWLASTL 177 (193)
Q Consensus 170 ~~~l~~~~ 177 (193)
++++.+.+
T Consensus 155 ~~~l~~~l 162 (163)
T cd01860 155 FTEIAKKL 162 (163)
T ss_pred HHHHHHHh
Confidence 99999875
No 98
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.97 E-value=1.2e-29 Score=177.03 Aligned_cols=154 Identities=21% Similarity=0.199 Sum_probs=123.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCcc--ccccccceeEE--EEEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEE
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHIGEVL--STVPTIGFNVE--KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGL 88 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~--~~~~t~~~~~~--~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 88 (193)
++.+||+++|++|+|||||++++.++.+. .+.||.+..+. .+.. ....+.+||++|++.+...+..+++++|++
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~ 81 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA 81 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence 46799999999999999999999999885 46688876543 3444 347899999999999998889999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC-----CHhHHHhhhCCCcCCCCceEEEEeccccC
Q 029446 89 IYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM-----TPMEVCEGLGLFDLKNRKWHIQGTCALKG 163 (193)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (193)
++|+|++++.+++.+..|+..+... .+.|+++|+||+|+.+.. ..++..+.++.. .++++||+++
T Consensus 82 llv~d~~~~~s~~~~~~~~~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~-------~~~~~Sa~~~ 151 (169)
T cd01892 82 CLVYDSSDPKSFSYCAEVYKKYFML---GEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLP-------PPLHFSSKLG 151 (169)
T ss_pred EEEEeCCCHHHHHHHHHHHHHhccC---CCCeEEEEEEcccccccccccccCHHHHHHHcCCC-------CCEEEEeccC
Confidence 9999999999999988888765322 479999999999986532 123333333221 3689999999
Q ss_pred CCHHHHHHHHHHHHH
Q 029446 164 DGLYEGLDWLASTLK 178 (193)
Q Consensus 164 ~gi~~~~~~l~~~~~ 178 (193)
.|++++|+.+.+.+.
T Consensus 152 ~~v~~lf~~l~~~~~ 166 (169)
T cd01892 152 DSSNELFTKLATAAQ 166 (169)
T ss_pred ccHHHHHHHHHHHhh
Confidence 999999999998875
No 99
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.97 E-value=1e-29 Score=176.04 Aligned_cols=154 Identities=21% Similarity=0.369 Sum_probs=125.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-cccccceeEEE--EEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEE
Q 029446 18 MRVVMLGLDAAGKTTILYKLHIGEVLS-TVPTIGFNVEK--VQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVV 92 (193)
Q Consensus 18 ~~v~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~~--~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (193)
+||+++|++|+|||||++++.+..+.. +.++.+.++.. +.. ..+.+.+||+||++.+...+..+++++|++++|+
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 689999999999999999999988763 56777765542 333 3478999999999999998899999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC-CHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHH
Q 029446 93 DSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM-TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLD 171 (193)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~ 171 (193)
|++++.+++.+..|+..+.......+.|+++|+||+|+.... ..++..+ +. +..+++++++||++|+|++++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~~~~~-~~----~~~~~~~~~~Sa~~~~gi~~~~~ 155 (161)
T cd01863 81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVTREEGLK-FA----RKHNMLFIETSAKTRDGVQQAFE 155 (161)
T ss_pred ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccccCHHHHHH-HH----HHcCCEEEEEecCCCCCHHHHHH
Confidence 999999999999988877665555789999999999997433 2222222 21 23456899999999999999999
Q ss_pred HHHHH
Q 029446 172 WLAST 176 (193)
Q Consensus 172 ~l~~~ 176 (193)
.+.+.
T Consensus 156 ~~~~~ 160 (161)
T cd01863 156 ELVEK 160 (161)
T ss_pred HHHHh
Confidence 98875
No 100
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.97 E-value=4.5e-30 Score=183.18 Aligned_cols=162 Identities=20% Similarity=0.122 Sum_probs=121.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE--EEEEcC--EEEEEEecCCCCCCHH--------hHHhhhcC
Q 029446 18 MRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE--KVQYKN--VIFTVWDVGGQEKLRP--------LWRHYFNN 84 (193)
Q Consensus 18 ~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~~~--~~~~i~D~~g~~~~~~--------~~~~~~~~ 84 (193)
+||+++|.+|||||||++++.++.+. .+.||.+.... .+..++ +.+.+|||||...+.. .....+++
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 58999999999999999999998887 45677764432 333433 7889999999654321 13345789
Q ss_pred CCEEEEEEECCChhhHHHHHHHHHHHHcCC--CCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCcCCCCceEEEEeccc
Q 029446 85 TDGLIYVVDSLDRERIGKAKQEFQAIIKDP--FMLNSVILVFANKQDMKGAMT-PMEVCEGLGLFDLKNRKWHIQGTCAL 161 (193)
Q Consensus 85 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (193)
+|++++|||++++++|+.+..|+..+.... ...++|+++|+||+|+..... ..+....+. .+..++++++|||+
T Consensus 81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~---~~~~~~~~~e~Sak 157 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLV---RKSWKCGYLECSAK 157 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHH---HHhcCCcEEEecCC
Confidence 999999999999999999998888876643 246799999999999965321 111111111 12345689999999
Q ss_pred cCCCHHHHHHHHHHHHHhhhc
Q 029446 162 KGDGLYEGLDWLASTLKEMRA 182 (193)
Q Consensus 162 ~~~gi~~~~~~l~~~~~~~~~ 182 (193)
+|.|++++|+.+.+.+..+.+
T Consensus 158 ~g~~v~~lf~~i~~~~~~~~~ 178 (198)
T cd04142 158 YNWHILLLFKELLISATTRGR 178 (198)
T ss_pred CCCCHHHHHHHHHHHhhccCC
Confidence 999999999999998875553
No 101
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.97 E-value=1.6e-29 Score=185.66 Aligned_cols=156 Identities=21% Similarity=0.179 Sum_probs=124.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcc-cccccccee-EEEEEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEE
Q 029446 18 MRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFN-VEKVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVD 93 (193)
Q Consensus 18 ~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~-~~~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 93 (193)
+||+++|++|+|||||++++.++.+. .+.+|++.. ...+.. ..+.+.+|||+|++.|...+..++.++|++|+|||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfd 80 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFS 80 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEEe
Confidence 58999999999999999999998887 456776522 233344 34788999999999999888888899999999999
Q ss_pred CCChhhHHHHHHHHHHHHcCC--------CCCCCeEEEEEeCCCCCC--CCCHhHHHhhhCCCcCCCCceEEEEeccccC
Q 029446 94 SLDRERIGKAKQEFQAIIKDP--------FMLNSVILVFANKQDMKG--AMTPMEVCEGLGLFDLKNRKWHIQGTCALKG 163 (193)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~--------~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (193)
++++.+|+++..|+.++.... ...+.|+|+|+||+|+.. ....+++.+.... ...++++++||++|
T Consensus 81 v~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~----~~~~~~~evSAktg 156 (247)
T cd04143 81 LDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGG----DENCAYFEVSAKKN 156 (247)
T ss_pred CCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHh----cCCCEEEEEeCCCC
Confidence 999999999999888886531 235789999999999975 2334444443321 22457999999999
Q ss_pred CCHHHHHHHHHHHH
Q 029446 164 DGLYEGLDWLASTL 177 (193)
Q Consensus 164 ~gi~~~~~~l~~~~ 177 (193)
.|++++|++|....
T Consensus 157 ~gI~elf~~L~~~~ 170 (247)
T cd04143 157 SNLDEMFRALFSLA 170 (247)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999999865
No 102
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.97 E-value=3.5e-30 Score=178.87 Aligned_cols=154 Identities=19% Similarity=0.282 Sum_probs=122.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC--Ccc-ccccccceeEEE--EEE---cCEEEEEEecCCCCCCHHhHHhhhcCCCEEE
Q 029446 18 MRVVMLGLDAAGKTTILYKLHIG--EVL-STVPTIGFNVEK--VQY---KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLI 89 (193)
Q Consensus 18 ~~v~v~G~~~~GKssli~~l~~~--~~~-~~~~t~~~~~~~--~~~---~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (193)
+||+++|++|||||||++++..+ .+. .+.+|.+.++.. +.. ....+.+||+||++.+...+..+++++|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 58999999999999999999864 444 566777766533 222 4589999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhH-HHhhhCCCcCCCCceEEEEeccccCCCHHH
Q 029446 90 YVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPME-VCEGLGLFDLKNRKWHIQGTCALKGDGLYE 168 (193)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 168 (193)
+|+|++++.+++.+..|+..+.... .+.|+++|+||+|+.+...... ..+.+. ...+.+++++||+++.|+++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~gi~~ 154 (164)
T cd04101 81 LVYDVSNKASFENCSRWVNKVRTAS--KHMPGVLVGNKMDLADKAEVTDAQAQAFA----QANQLKFFKTSALRGVGYEE 154 (164)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccCCCHHHHHHHH----HHcCCeEEEEeCCCCCChHH
Confidence 9999999999999988888876542 5689999999999876532211 111121 22345799999999999999
Q ss_pred HHHHHHHHH
Q 029446 169 GLDWLASTL 177 (193)
Q Consensus 169 ~~~~l~~~~ 177 (193)
+++.|.+.+
T Consensus 155 l~~~l~~~~ 163 (164)
T cd04101 155 PFESLARAF 163 (164)
T ss_pred HHHHHHHHh
Confidence 999998865
No 103
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.97 E-value=1.3e-30 Score=185.46 Aligned_cols=156 Identities=17% Similarity=0.178 Sum_probs=114.7
Q ss_pred ccEEEEEcCCCCCHHHHHH-HHhcCCc-----c-ccccccce-e-EE-----------EEEEcCEEEEEEecCCCCCCHH
Q 029446 17 EMRVVMLGLDAAGKTTILY-KLHIGEV-----L-STVPTIGF-N-VE-----------KVQYKNVIFTVWDVGGQEKLRP 76 (193)
Q Consensus 17 ~~~v~v~G~~~~GKssli~-~l~~~~~-----~-~~~~t~~~-~-~~-----------~~~~~~~~~~i~D~~g~~~~~~ 76 (193)
.+||+++|++|+|||||+. ++.++.+ . .+.||++. + +. .++...+.+.+|||+|+++ .
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~ 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence 4799999999999999995 6655433 2 35677752 2 21 2333468999999999875 3
Q ss_pred hHHhhhcCCCEEEEEEECCChhhHHHHHH-HHHHHHcCCCCCCCeEEEEEeCCCCCCCCC----------------HhHH
Q 029446 77 LWRHYFNNTDGLIYVVDSLDRERIGKAKQ-EFQAIIKDPFMLNSVILVFANKQDMKGAMT----------------PMEV 139 (193)
Q Consensus 77 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~----------------~~~~ 139 (193)
....+++++|++++|||++++.+|+++.. |+..+.... .+.|+|+|+||+|+.+... ...+
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~--~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V 157 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC--PRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADIL 157 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC--CCCCEEEEEEchhccccccchhhhcccccccccccCCcc
Confidence 45668899999999999999999999974 666654432 4789999999999864210 1122
Q ss_pred HhhhCCCcCCCCceEEEEeccccCCCHHHHHHHHHHH
Q 029446 140 CEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAST 176 (193)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~ 176 (193)
....+...++..+++|++|||++|+||+++|+.+++.
T Consensus 158 ~~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 158 PPETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred CHHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 2222333345566799999999999999999998864
No 104
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.97 E-value=2.7e-30 Score=181.17 Aligned_cols=157 Identities=22% Similarity=0.230 Sum_probs=118.7
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCccc-cccccceeEE-EEEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECC
Q 029446 20 VVMLGLDAAGKTTILYKLHIGEVLS-TVPTIGFNVE-KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL 95 (193)
Q Consensus 20 v~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~-~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~ 95 (193)
|+|+|++|+|||||++++.++.+.. +.++....+. .+.. ..+.+.+|||||++++...+..+++++|++++|||++
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~ 80 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVD 80 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECC
Confidence 5899999999999999999998864 4566554443 2333 3567999999999999999999999999999999999
Q ss_pred ChhhHHHHHH-HHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH-hHH--------HhhhCCCcCCCCce-EEEEeccccCC
Q 029446 96 DRERIGKAKQ-EFQAIIKDPFMLNSVILVFANKQDMKGAMTP-MEV--------CEGLGLFDLKNRKW-HIQGTCALKGD 164 (193)
Q Consensus 96 ~~~s~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~--------~~~~~~~~~~~~~~-~~~~~Sa~~~~ 164 (193)
++++|+++.. |+..+.... ++.|+|+|+||+|+.+.... .+. ........++..+. ++++|||+++.
T Consensus 81 ~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 158 (174)
T smart00174 81 SPASFENVKEKWYPEVKHFC--PNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQE 158 (174)
T ss_pred CHHHHHHHHHHHHHHHHhhC--CCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCC
Confidence 9999999864 666655432 58999999999998763211 000 00000111223343 79999999999
Q ss_pred CHHHHHHHHHHHHH
Q 029446 165 GLYEGLDWLASTLK 178 (193)
Q Consensus 165 gi~~~~~~l~~~~~ 178 (193)
|++++|+.+.+.+.
T Consensus 159 ~v~~lf~~l~~~~~ 172 (174)
T smart00174 159 GVREVFEEAIRAAL 172 (174)
T ss_pred CHHHHHHHHHHHhc
Confidence 99999999998764
No 105
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.97 E-value=7.4e-30 Score=177.04 Aligned_cols=157 Identities=19% Similarity=0.278 Sum_probs=125.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEEE-EEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEE
Q 029446 18 MRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVEK-VQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVD 93 (193)
Q Consensus 18 ~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~-~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 93 (193)
+||+++|++|+|||||++++....+. .+.++.+..+.. ... ..+.+.+||+||+.++...+..++++++++++|+|
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 80 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFS 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEE
Confidence 58999999999999999999988876 445555444332 222 45789999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHH
Q 029446 94 SLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA--MTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLD 171 (193)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~ 171 (193)
++++.+++....|+..+.......+.|+++|+||+|+.+. ....+... . .+..+.+++++||++++|++++++
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~-~----~~~~~~~~~~~Sa~~~~gi~~l~~ 155 (164)
T cd04139 81 ITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAAN-L----ARQWGVPYVETSAKTRQNVEKAFY 155 (164)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHH-H----HHHhCCeEEEeeCCCCCCHHHHHH
Confidence 9999999999999999887644568999999999998762 22222111 1 112345899999999999999999
Q ss_pred HHHHHHHh
Q 029446 172 WLASTLKE 179 (193)
Q Consensus 172 ~l~~~~~~ 179 (193)
++.+.+.+
T Consensus 156 ~l~~~~~~ 163 (164)
T cd04139 156 DLVREIRQ 163 (164)
T ss_pred HHHHHHHh
Confidence 99987753
No 106
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.97 E-value=5.1e-29 Score=174.22 Aligned_cols=159 Identities=19% Similarity=0.261 Sum_probs=124.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-cccccceeEE--EEEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEE
Q 029446 18 MRVVMLGLDAAGKTTILYKLHIGEVLS-TVPTIGFNVE--KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVV 92 (193)
Q Consensus 18 ~~v~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (193)
+||+++|++|+|||||++++.++.+.. +.+|.+.++. .+.. ..+.+.+||+||++.+...+..+++++|++++|+
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 589999999999999999999988763 3466665543 2333 3467889999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHcCCC---CCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCcCCCC-ceEEEEeccccCCCH
Q 029446 93 DSLDRERIGKAKQEFQAIIKDPF---MLNSVILVFANKQDMKGA--MTPMEVCEGLGLFDLKNR-KWHIQGTCALKGDGL 166 (193)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~---~~~~p~ivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~gi 166 (193)
|+++++++++...|...+..... ..+.|+++|+||+|+..+ ...++..... +.. ..+++++||++|.|+
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~gv 155 (172)
T cd01862 81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWC-----QSNGNIPYFETSAKEAINV 155 (172)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHH-----HHcCCceEEEEECCCCCCH
Confidence 99999999998888777655322 347999999999999842 2233322221 122 258999999999999
Q ss_pred HHHHHHHHHHHHhhh
Q 029446 167 YEGLDWLASTLKEMR 181 (193)
Q Consensus 167 ~~~~~~l~~~~~~~~ 181 (193)
+++++++.+.+.+..
T Consensus 156 ~~l~~~i~~~~~~~~ 170 (172)
T cd01862 156 EQAFETIARKALEQE 170 (172)
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999999887653
No 107
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.97 E-value=7.9e-30 Score=178.79 Aligned_cols=159 Identities=19% Similarity=0.210 Sum_probs=118.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-cccccceeEE-EEEEc--CEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEE
Q 029446 18 MRVVMLGLDAAGKTTILYKLHIGEVLS-TVPTIGFNVE-KVQYK--NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVD 93 (193)
Q Consensus 18 ~~v~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~-~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 93 (193)
+||+++|++|+|||||++++..+.+.. +.+|....+. .+... .+.+.+||+||++.+...+..+++++|++++|+|
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~ 80 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFS 80 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEEE
Confidence 589999999999999999999988763 4555543332 33333 4668899999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHH---------hhhCCCcCCCCc-eEEEEeccccC
Q 029446 94 SLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVC---------EGLGLFDLKNRK-WHIQGTCALKG 163 (193)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~---------~~~~~~~~~~~~-~~~~~~Sa~~~ 163 (193)
++++.+|+.+...|...+... ..+.|+++|+||+|+.+........ ...+...++..+ .++++|||++|
T Consensus 81 ~~~~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 159 (174)
T cd04135 81 VVNPASFQNVKEEWVPELKEY-APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALTQ 159 (174)
T ss_pred CCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCcC
Confidence 999999999875444433332 4689999999999986542211111 111111112233 36999999999
Q ss_pred CCHHHHHHHHHHHH
Q 029446 164 DGLYEGLDWLASTL 177 (193)
Q Consensus 164 ~gi~~~~~~l~~~~ 177 (193)
.|++++|+.+++.+
T Consensus 160 ~gi~~~f~~~~~~~ 173 (174)
T cd04135 160 KGLKTVFDEAILAI 173 (174)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999998875
No 108
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=7.9e-32 Score=177.52 Aligned_cols=165 Identities=20% Similarity=0.355 Sum_probs=139.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCcccc-ccccceeEEE--EEE-----------cCEEEEEEecCCCCCCHHhHHhh
Q 029446 16 SEMRVVMLGLDAAGKTTILYKLHIGEVLST-VPTIGFNVEK--VQY-----------KNVIFTVWDVGGQEKLRPLWRHY 81 (193)
Q Consensus 16 ~~~~v~v~G~~~~GKssli~~l~~~~~~~~-~~t~~~~~~~--~~~-----------~~~~~~i~D~~g~~~~~~~~~~~ 81 (193)
+-+|++.+|+.|+|||||+.++..+.|... .+|+|+++.. +-+ ..+.+++|||+||++|+++.-.+
T Consensus 8 ylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAF 87 (219)
T KOG0081|consen 8 YLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAF 87 (219)
T ss_pred HHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHH
Confidence 446888999999999999999999998854 6888888654 222 15789999999999999999999
Q ss_pred hcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccc
Q 029446 82 FNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCAL 161 (193)
Q Consensus 82 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (193)
++++-+++++||+++.+||-++..|+.++.......+..+++++||+|+.+. +.+.+......+...++|||++||-
T Consensus 88 fRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~---R~Vs~~qa~~La~kyglPYfETSA~ 164 (219)
T KOG0081|consen 88 FRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQ---RVVSEDQAAALADKYGLPYFETSAC 164 (219)
T ss_pred HHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhh---hhhhHHHHHHHHHHhCCCeeeeccc
Confidence 9999999999999999999999999999988777788999999999999875 3333333333345677799999999
Q ss_pred cCCCHHHHHHHHHHHHHhhhcc
Q 029446 162 KGDGLYEGLDWLASTLKEMRAA 183 (193)
Q Consensus 162 ~~~gi~~~~~~l~~~~~~~~~~ 183 (193)
+|.||++.++.+.+.++++.+.
T Consensus 165 tg~Nv~kave~LldlvM~Rie~ 186 (219)
T KOG0081|consen 165 TGTNVEKAVELLLDLVMKRIEQ 186 (219)
T ss_pred cCcCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988877653
No 109
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.97 E-value=1.9e-29 Score=182.93 Aligned_cols=158 Identities=18% Similarity=0.145 Sum_probs=120.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcc--ccccccc--eeEEEEEE--cCEEEEEEecCCCCCCHHhHHhhhc-CCCEEEE
Q 029446 18 MRVVMLGLDAAGKTTILYKLHIGEVL--STVPTIG--FNVEKVQY--KNVIFTVWDVGGQEKLRPLWRHYFN-NTDGLIY 90 (193)
Q Consensus 18 ~~v~v~G~~~~GKssli~~l~~~~~~--~~~~t~~--~~~~~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~-~~d~~i~ 90 (193)
+||+++|++|+|||||++++..+.+. .+.++.+ .....+.. ....+.+||+||++ ......++. ++|++++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~--~~~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE--MWTEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc--hHHHhHHhhcCCCEEEE
Confidence 68999999999999999999887774 4455554 22233333 56789999999998 333445666 8999999
Q ss_pred EEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH-hHHHhhhCCCcCCCCceEEEEeccccCCCHHHH
Q 029446 91 VVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP-MEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEG 169 (193)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~ 169 (193)
|||++++.+|+.+..|+..+.......+.|+|+|+||+|+.+.... .+....+ +...+++++++||+++.|++++
T Consensus 79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~----a~~~~~~~~e~SA~~~~gv~~l 154 (221)
T cd04148 79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRAC----AVVFDCKFIETSAGLQHNVDEL 154 (221)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHH----HHHcCCeEEEecCCCCCCHHHH
Confidence 9999999999999998888766544468999999999998764221 1111112 1233457999999999999999
Q ss_pred HHHHHHHHHhhh
Q 029446 170 LDWLASTLKEMR 181 (193)
Q Consensus 170 ~~~l~~~~~~~~ 181 (193)
|+++.+.+....
T Consensus 155 ~~~l~~~~~~~~ 166 (221)
T cd04148 155 LEGIVRQIRLRR 166 (221)
T ss_pred HHHHHHHHHhhh
Confidence 999999986444
No 110
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.97 E-value=6.2e-30 Score=177.89 Aligned_cols=155 Identities=17% Similarity=0.194 Sum_probs=116.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeE-EE--EEEcCEEEEEEecCCCCC-CHHhHHhhhcCCCEEEEEEE
Q 029446 19 RVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNV-EK--VQYKNVIFTVWDVGGQEK-LRPLWRHYFNNTDGLIYVVD 93 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~-~~--~~~~~~~~~i~D~~g~~~-~~~~~~~~~~~~d~~i~v~d 93 (193)
||+++|++|+|||||++++..+.+. .+.++.+..+ .. +....+.+.+||+||+.. .......+++.+|++++|+|
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d 80 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVYS 80 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEEE
Confidence 6899999999999999999987775 4455553232 22 333456799999999985 34456678899999999999
Q ss_pred CCChhhHHHHHHHHHHHHcCCC-CCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcCCCCceEEEEeccccCC-CHHHH
Q 029446 94 SLDRERIGKAKQEFQAIIKDPF-MLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGD-GLYEG 169 (193)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-gi~~~ 169 (193)
++++.+|+.+..|+..+..... ..+.|+++|+||+|+.... ..++. ..+ .+..+.+++++||+++. |++++
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~-~~~----~~~~~~~~~e~Sa~~~~~~v~~~ 155 (165)
T cd04146 81 ITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEG-EKL----ASELGCLFFEVSAAEDYDGVHSV 155 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHH-HHH----HHHcCCEEEEeCCCCCchhHHHH
Confidence 9999999999888877665432 4579999999999986432 22111 111 12234589999999994 99999
Q ss_pred HHHHHHHHH
Q 029446 170 LDWLASTLK 178 (193)
Q Consensus 170 ~~~l~~~~~ 178 (193)
|+.+.+.+.
T Consensus 156 f~~l~~~~~ 164 (165)
T cd04146 156 FHELCREVR 164 (165)
T ss_pred HHHHHHHHh
Confidence 999998764
No 111
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.97 E-value=2.5e-29 Score=173.95 Aligned_cols=154 Identities=25% Similarity=0.319 Sum_probs=121.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-cccccceeE--EEEEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEE
Q 029446 18 MRVVMLGLDAAGKTTILYKLHIGEVLS-TVPTIGFNV--EKVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVV 92 (193)
Q Consensus 18 ~~v~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~--~~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (193)
+||+++|.+|+|||||++++.++.+.. +.++..... ..+.. ....+.+||+||++.+...+..+++++|++++|+
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 689999999999999999999988763 334443333 22332 3467999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHH
Q 029446 93 DSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT--PMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGL 170 (193)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~ 170 (193)
|++++++++.+..|+..+..... .+.|+++|+||+|+..... .++..+.. +..+.+++++||++++|+++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~gi~~~~ 154 (162)
T cd04123 81 DITDADSFQKVKKWIKELKQMRG-NNISLVIVGNKIDLERQRVVSKSEAEEYA-----KSVGAKHFETSAKTGKGIEELF 154 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECcccccccCCCHHHHHHHH-----HHcCCEEEEEeCCCCCCHHHHH
Confidence 99999999999888888765433 3789999999999875422 22222211 2234579999999999999999
Q ss_pred HHHHHHH
Q 029446 171 DWLASTL 177 (193)
Q Consensus 171 ~~l~~~~ 177 (193)
+++.+.+
T Consensus 155 ~~l~~~~ 161 (162)
T cd04123 155 LSLAKRM 161 (162)
T ss_pred HHHHHHh
Confidence 9998875
No 112
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.97 E-value=1.1e-29 Score=178.06 Aligned_cols=156 Identities=19% Similarity=0.195 Sum_probs=114.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-cccccceeE-EEEEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEE
Q 029446 18 MRVVMLGLDAAGKTTILYKLHIGEVLS-TVPTIGFNV-EKVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVD 93 (193)
Q Consensus 18 ~~v~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~-~~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 93 (193)
+|++++|++|+|||||++++.++.+.. +.+|....+ ..+.. ..+.+.+||+||++++...+..+++++|++++|||
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d 80 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFS 80 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEEE
Confidence 589999999999999999999888764 445542222 12333 35788999999999999999999999999999999
Q ss_pred CCChhhHHHHH-HHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC---------HhHHHhhhCCCcCCCCce-EEEEecccc
Q 029446 94 SLDRERIGKAK-QEFQAIIKDPFMLNSVILVFANKQDMKGAMT---------PMEVCEGLGLFDLKNRKW-HIQGTCALK 162 (193)
Q Consensus 94 ~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~---------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 162 (193)
++++.+|+++. .|+..+... ..+.|+++|+||+|+..... .+.+........++..+. ++++|||++
T Consensus 81 ~~~~~sf~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~ 158 (173)
T cd04130 81 VVNPSSFQNISEKWIPEIRKH--NPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALT 158 (173)
T ss_pred CCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCC
Confidence 99999999986 466555432 25789999999999865321 001111011111122333 799999999
Q ss_pred CCCHHHHHHHHHH
Q 029446 163 GDGLYEGLDWLAS 175 (193)
Q Consensus 163 ~~gi~~~~~~l~~ 175 (193)
|.|++++|+.++-
T Consensus 159 ~~~v~~lf~~~~~ 171 (173)
T cd04130 159 QKNLKEVFDTAIL 171 (173)
T ss_pred CCCHHHHHHHHHh
Confidence 9999999988753
No 113
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.97 E-value=3.9e-29 Score=174.08 Aligned_cols=158 Identities=15% Similarity=0.182 Sum_probs=116.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccccccccceeEE---EEEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEEC
Q 029446 18 MRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVE---KVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDS 94 (193)
Q Consensus 18 ~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~---~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~ 94 (193)
.||+++|++|+|||||++++.++.+....++...... .+....+++.+|||||+..+...+..++..+|++++|+|+
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~ 80 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYSV 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcccceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEEC
Confidence 3899999999999999999999888644333222221 2223568899999999998888888888999999999999
Q ss_pred CChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH----hHHHhhhCCCcCCCCceEEEEeccccCCCHHHHH
Q 029446 95 LDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP----MEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGL 170 (193)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~ 170 (193)
+++.+++.+..+|...++... .+.|+++|+||+|+.+.... ++....... ... ..++++|||+++.|++++|
T Consensus 81 ~~~~s~~~~~~~~~~~i~~~~-~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~-~~~~~e~Sa~~~~~v~~lf 156 (166)
T cd01893 81 DRPSTLERIRTKWLPLIRRLG-VKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNE--FRE-IETCVECSAKTLINVSEVF 156 (166)
T ss_pred CCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhcccccchhHHHHHHHHHHHH--Hhc-ccEEEEeccccccCHHHHH
Confidence 999999998754544444322 47999999999999775432 111110000 001 1279999999999999999
Q ss_pred HHHHHHHHh
Q 029446 171 DWLASTLKE 179 (193)
Q Consensus 171 ~~l~~~~~~ 179 (193)
+.+.+.+..
T Consensus 157 ~~~~~~~~~ 165 (166)
T cd01893 157 YYAQKAVLH 165 (166)
T ss_pred HHHHHHhcC
Confidence 999887643
No 114
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.96 E-value=7.3e-29 Score=174.82 Aligned_cols=162 Identities=19% Similarity=0.266 Sum_probs=128.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccee-EEEEEEc--CEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEE
Q 029446 18 MRVVMLGLDAAGKTTILYKLHIGEVLS-TVPTIGFN-VEKVQYK--NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVD 93 (193)
Q Consensus 18 ~~v~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~-~~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 93 (193)
.||+++|.+|+|||||++++.++.+.. +.+|.+.. ...+... ...+.+||+||+.++...+..++..++++++|+|
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 81 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYS 81 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEE
Confidence 589999999999999999999888763 45655433 2333333 4678999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHH
Q 029446 94 SLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLD 171 (193)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~ 171 (193)
+++..+++.+..++..+.+.....+.|+|+|+||+|+.... ...+... +. +..+.+++++||++++|+.++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~-~~----~~~~~~~~~~Sa~~~~gv~~l~~ 156 (180)
T cd04137 82 VTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKE-LA----ESWGAAFLESSARENENVEEAFE 156 (180)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHH-HH----HHcCCeEEEEeCCCCCCHHHHHH
Confidence 99999999999999998876555678999999999987532 2222211 11 22335899999999999999999
Q ss_pred HHHHHHHhhhccC
Q 029446 172 WLASTLKEMRAAG 184 (193)
Q Consensus 172 ~l~~~~~~~~~~~ 184 (193)
++.+.+.......
T Consensus 157 ~l~~~~~~~~~~~ 169 (180)
T cd04137 157 LLIEEIEKVENPL 169 (180)
T ss_pred HHHHHHHHhcCCC
Confidence 9999987666433
No 115
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.5e-29 Score=163.97 Aligned_cols=180 Identities=53% Similarity=0.922 Sum_probs=166.4
Q ss_pred CchhHHHHhhhhcCC-CccEEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEEEEEcCEEEEEEecCCCCCCHHhHH
Q 029446 1 MGQAFRKLFDVFFGN-SEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWR 79 (193)
Q Consensus 1 ~~~~~~~~~~~~~~~-~~~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~ 79 (193)
|+..+..+|...+.. +..+++++|-.|+||||+..++.-++...+.||.+++...+.+++.++++||.+|+...+..|+
T Consensus 1 m~~g~~s~f~~L~g~e~e~rililgldGaGkttIlyrlqvgevvttkPtigfnve~v~yKNLk~~vwdLggqtSirPyWR 80 (182)
T KOG0072|consen 1 MGGGFSSLFKALQGPEREMRILILGLDGAGKTTILYRLQVGEVVTTKPTIGFNVETVPYKNLKFQVWDLGGQTSIRPYWR 80 (182)
T ss_pred CCchHHHHHHHhcCCccceEEEEeeccCCCeeEEEEEcccCcccccCCCCCcCccccccccccceeeEccCcccccHHHH
Confidence 666777777776666 8999999999999999999999888888889999999999999999999999999999999999
Q ss_pred hhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEec
Q 029446 80 HYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTC 159 (193)
Q Consensus 80 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (193)
.|+.+.|++|+|+|.++.+.+......+..++.+.+.++..+++++||.|........|+...+++..++.+.+.++++|
T Consensus 81 cYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~tS 160 (182)
T KOG0072|consen 81 CYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVKTS 160 (182)
T ss_pred HHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhheeEEEeec
Confidence 99999999999999999999988888888888888888888999999999988888899999999999999999999999
Q ss_pred cccCCCHHHHHHHHHHHHHhh
Q 029446 160 ALKGDGLYEGLDWLASTLKEM 180 (193)
Q Consensus 160 a~~~~gi~~~~~~l~~~~~~~ 180 (193)
|.+|+|++...+|+.+.+.++
T Consensus 161 A~kg~Gld~~~DWL~~~l~~~ 181 (182)
T KOG0072|consen 161 AVKGEGLDPAMDWLQRPLKSR 181 (182)
T ss_pred cccccCCcHHHHHHHHHHhcc
Confidence 999999999999999988654
No 116
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.96 E-value=1.8e-28 Score=175.37 Aligned_cols=156 Identities=15% Similarity=0.178 Sum_probs=123.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccc-cccccc-eeEEEEEEcC--EEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEEC
Q 029446 19 RVVMLGLDAAGKTTILYKLHIGEVLS-TVPTIG-FNVEKVQYKN--VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDS 94 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~~~~~~-~~~t~~-~~~~~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~ 94 (193)
||+++|.+|+|||||++++.++.+.. +.+|.. .....+.+.+ +.+.+||+||+..+...+..++.++|++++|+|+
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~ 80 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAV 80 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEEC
Confidence 68999999999999999999988764 445543 2333444444 7899999999999999888999999999999999
Q ss_pred CChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC---HhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHH
Q 029446 95 LDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT---PMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLD 171 (193)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~ 171 (193)
+++.+++.+..|+..+.......+.|+|+|+||+|+..... ..+..+... ...+.+++++||++|.|++++++
T Consensus 81 ~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~----~~~~~~~~~~Sa~~g~gv~~l~~ 156 (198)
T cd04147 81 DDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVE----LDWNCGFVETSAKDNENVLEVFK 156 (198)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHH----hhcCCcEEEecCCCCCCHHHHHH
Confidence 99999999999888887765556799999999999865311 111111111 12345799999999999999999
Q ss_pred HHHHHHH
Q 029446 172 WLASTLK 178 (193)
Q Consensus 172 ~l~~~~~ 178 (193)
++.+.+.
T Consensus 157 ~l~~~~~ 163 (198)
T cd04147 157 ELLRQAN 163 (198)
T ss_pred HHHHHhh
Confidence 9998775
No 117
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.96 E-value=3.4e-30 Score=169.74 Aligned_cols=166 Identities=20% Similarity=0.268 Sum_probs=135.4
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhcCCcccc-ccccceeE--EE--EEEcCEEEEEEecCCCCCCHHhHHhhhcCCCE
Q 029446 13 FGNSEMRVVMLGLDAAGKTTILYKLHIGEVLST-VPTIGFNV--EK--VQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDG 87 (193)
Q Consensus 13 ~~~~~~~v~v~G~~~~GKssli~~l~~~~~~~~-~~t~~~~~--~~--~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 87 (193)
.+...||++++|..=+|||||+=+++.+.|... .+|.-..+ .. +......+.||||+||++|..+-+.|+++.++
T Consensus 9 g~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnG 88 (218)
T KOG0088|consen 9 GKSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNG 88 (218)
T ss_pred CCceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCc
Confidence 456789999999999999999999999988743 34443222 22 33356789999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCCHH
Q 029446 88 LIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLY 167 (193)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 167 (193)
+++|||++++++|+.+..|+.++... -...+.+++|+||+|+.++ +.+....+...++.-+..|+++||+++.||.
T Consensus 89 alLVyDITDrdSFqKVKnWV~Elr~m-lGnei~l~IVGNKiDLEee---R~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~ 164 (218)
T KOG0088|consen 89 ALLVYDITDRDSFQKVKNWVLELRTM-LGNEIELLIVGNKIDLEEE---RQVTRQEAEAYAESVGALYMETSAKDNVGIS 164 (218)
T ss_pred eEEEEeccchHHHHHHHHHHHHHHHH-hCCeeEEEEecCcccHHHh---hhhhHHHHHHHHHhhchhheecccccccCHH
Confidence 99999999999999999999998764 3356788999999998875 4444444444456667789999999999999
Q ss_pred HHHHHHHHHHHhhhc
Q 029446 168 EGLDWLASTLKEMRA 182 (193)
Q Consensus 168 ~~~~~l~~~~~~~~~ 182 (193)
++|+.+...+.+...
T Consensus 165 elFe~Lt~~MiE~~s 179 (218)
T KOG0088|consen 165 ELFESLTAKMIEHSS 179 (218)
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999888776653
No 118
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.96 E-value=2.6e-28 Score=171.26 Aligned_cols=159 Identities=19% Similarity=0.233 Sum_probs=118.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccceeE-EEEEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEE
Q 029446 17 EMRVVMLGLDAAGKTTILYKLHIGEVLS-TVPTIGFNV-EKVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVV 92 (193)
Q Consensus 17 ~~~v~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~-~~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (193)
..||+++|++|||||||++++.++.+.. +.+|.+..+ ..+.. ..+.+.+|||||++.+...+..++.++|++++|+
T Consensus 1 ~~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (175)
T cd01870 1 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF 80 (175)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence 3689999999999999999999988874 556666543 23333 4568899999999999988888889999999999
Q ss_pred ECCChhhHHHHHH-HHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHh-HHHhhhC--------CCcCCCC-ceEEEEeccc
Q 029446 93 DSLDRERIGKAKQ-EFQAIIKDPFMLNSVILVFANKQDMKGAMTPM-EVCEGLG--------LFDLKNR-KWHIQGTCAL 161 (193)
Q Consensus 93 d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~-~~~~~~~--------~~~~~~~-~~~~~~~Sa~ 161 (193)
|++++++|+.+.. |...+.+. ..+.|+++|+||+|+.+..... ++..... ....+.. ..++++|||+
T Consensus 81 ~~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~ 158 (175)
T cd01870 81 SIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAK 158 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEeccc
Confidence 9999999999865 55544432 2578999999999987542211 1110000 0000111 2379999999
Q ss_pred cCCCHHHHHHHHHHHH
Q 029446 162 KGDGLYEGLDWLASTL 177 (193)
Q Consensus 162 ~~~gi~~~~~~l~~~~ 177 (193)
+|.|++++|+++.+.+
T Consensus 159 ~~~~v~~lf~~l~~~~ 174 (175)
T cd01870 159 TKEGVREVFEMATRAA 174 (175)
T ss_pred cCcCHHHHHHHHHHHh
Confidence 9999999999998654
No 119
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.96 E-value=2.1e-28 Score=170.77 Aligned_cols=158 Identities=21% Similarity=0.303 Sum_probs=122.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE--EEEEc--CEEEEEEecCCCCCCHHhHHhhhcCCCEEE
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE--KVQYK--NVIFTVWDVGGQEKLRPLWRHYFNNTDGLI 89 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (193)
...++|+++|++|+|||||++++..+.+. .+.+|.+.... .+... .+.+.+||+||+..+...+..++..+|+++
T Consensus 5 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 84 (169)
T cd04114 5 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALI 84 (169)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence 35689999999999999999999987765 34566664433 34443 367899999999999999899999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH-hHHHhhhCCCcCCCCceEEEEeccccCCCHHH
Q 029446 90 YVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP-MEVCEGLGLFDLKNRKWHIQGTCALKGDGLYE 168 (193)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 168 (193)
+|+|++++.+++.+..|+..+... ...+.|+++|+||+|+.+..+. .+..+.+. +....+++++||++|.|+++
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~----~~~~~~~~~~Sa~~~~gv~~ 159 (169)
T cd04114 85 LTYDITCEESFRCLPEWLREIEQY-ANNKVITILVGNKIDLAERREVSQQRAEEFS----DAQDMYYLETSAKESDNVEK 159 (169)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECcccccccccCHHHHHHHH----HHcCCeEEEeeCCCCCCHHH
Confidence 999999999999888887766443 2357899999999998754322 22222222 12235799999999999999
Q ss_pred HHHHHHHHH
Q 029446 169 GLDWLASTL 177 (193)
Q Consensus 169 ~~~~l~~~~ 177 (193)
+++++.+.+
T Consensus 160 l~~~i~~~~ 168 (169)
T cd04114 160 LFLDLACRL 168 (169)
T ss_pred HHHHHHHHh
Confidence 999998764
No 120
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.96 E-value=7.5e-28 Score=165.67 Aligned_cols=151 Identities=25% Similarity=0.382 Sum_probs=123.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-cccccceeEEEEEE----cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEE
Q 029446 18 MRVVMLGLDAAGKTTILYKLHIGEVLS-TVPTIGFNVEKVQY----KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVV 92 (193)
Q Consensus 18 ~~v~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~~~~~----~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (193)
+||+++|++++|||||++++.+..+.. +.+|.+.++..... ....+.+||+||+..+...+..+++++|++++|+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 589999999999999999999998875 46777777654433 3578999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCC-C-CCCHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHH
Q 029446 93 DSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMK-G-AMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGL 170 (193)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~ 170 (193)
|++++++++.+..|+..+..... ...|+++++||+|+. + ....++..+.. +..+.+++++||+++.|+++++
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~sa~~~~~i~~~~ 154 (159)
T cd00154 81 DITNRESFENLDKWLKELKEYAP-ENIPIILVGNKIDLEDQRQVSTEEAQQFA-----KENGLLFFETSAKTGENVEELF 154 (159)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-CCCcEEEEEEcccccccccccHHHHHHHH-----HHcCCeEEEEecCCCCCHHHHH
Confidence 99999999999998888766532 579999999999996 2 22333333222 2245689999999999999999
Q ss_pred HHHH
Q 029446 171 DWLA 174 (193)
Q Consensus 171 ~~l~ 174 (193)
++|.
T Consensus 155 ~~i~ 158 (159)
T cd00154 155 QSLA 158 (159)
T ss_pred HHHh
Confidence 9886
No 121
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.96 E-value=2.9e-28 Score=168.31 Aligned_cols=154 Identities=23% Similarity=0.263 Sum_probs=121.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE-EEEEc--CEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEEC
Q 029446 19 RVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE-KVQYK--NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDS 94 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~-~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~ 94 (193)
||+++|++|+|||||++++.+..+. .+.++.+..+. .+... .+.+.+||+||+..+...+..+++.+|++++|+|+
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 80 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSI 80 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEEC
Confidence 6899999999999999999988765 34455542222 23333 57899999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHHH
Q 029446 95 LDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDW 172 (193)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~ 172 (193)
++++++++...++..+.........|+++|+||+|+.... ..++..... +..+.+++++||+++.|+++++++
T Consensus 81 ~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~S~~~~~~i~~l~~~ 155 (160)
T cd00876 81 TDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALA-----KEWGCPFIETSAKDNINIDEVFKL 155 (160)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHH-----HHcCCcEEEeccCCCCCHHHHHHH
Confidence 9999999999999988876544689999999999988632 122222211 122358999999999999999999
Q ss_pred HHHHH
Q 029446 173 LASTL 177 (193)
Q Consensus 173 l~~~~ 177 (193)
|.+.+
T Consensus 156 l~~~i 160 (160)
T cd00876 156 LVREI 160 (160)
T ss_pred HHhhC
Confidence 98753
No 122
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=6e-29 Score=166.17 Aligned_cols=181 Identities=36% Similarity=0.640 Sum_probs=160.0
Q ss_pred CchhHHHHhhhhcCCCccEEEEEcCCCCCHHHHHHHHhcCC--------ccccccccceeEEEEEEcCEEEEEEecCCCC
Q 029446 1 MGQAFRKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGE--------VLSTVPTIGFNVEKVQYKNVIFTVWDVGGQE 72 (193)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~v~v~G~~~~GKssli~~l~~~~--------~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~ 72 (193)
|.-++..+|+.+.....|.|+|+|..++|||||+.+.-... .....+|+|.+..++......+.+||.+||+
T Consensus 1 m~tl~~gl~~~~~~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~~~~l~fwdlgGQe 80 (197)
T KOG0076|consen 1 MFTLMSGLYKYMFKKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVCNAPLSFWDLGGQE 80 (197)
T ss_pred ChhHHHHHHHHHhhhhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeeccceeEEEEcCChH
Confidence 55678889999999999999999999999999988764322 1245789999999999999999999999999
Q ss_pred CCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCC-CcCCCC
Q 029446 73 KLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGL-FDLKNR 151 (193)
Q Consensus 73 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-~~~~~~ 151 (193)
..+++|..++..|+++++++|+++++.|+.....+..+.......+.|+++.+||-|+.+..+.+++...++. ......
T Consensus 81 ~lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~~~e~~~~r 160 (197)
T KOG0076|consen 81 SLRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFGLAELIPRR 160 (197)
T ss_pred HHHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHhhhhhhcCCc
Confidence 9999999999999999999999999999999998888888767789999999999999999888888887773 223456
Q ss_pred ceEEEEeccccCCCHHHHHHHHHHHHHhhh
Q 029446 152 KWHIQGTCALKGDGLYEGLDWLASTLKEMR 181 (193)
Q Consensus 152 ~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~ 181 (193)
..++.++||.+|+||++.+.|+.+.+.++.
T Consensus 161 d~~~~pvSal~gegv~egi~w~v~~~~kn~ 190 (197)
T KOG0076|consen 161 DNPFQPVSALTGEGVKEGIEWLVKKLEKNV 190 (197)
T ss_pred cCccccchhhhcccHHHHHHHHHHHHhhcc
Confidence 778999999999999999999999998773
No 123
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.96 E-value=2.7e-28 Score=170.42 Aligned_cols=157 Identities=23% Similarity=0.277 Sum_probs=116.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE-E--EEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEE
Q 029446 18 MRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE-K--VQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVD 93 (193)
Q Consensus 18 ~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~-~--~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 93 (193)
+||+++|++|+|||||+++|.++.+. .+.++...... . .....+.+.+||+||++++......+++.+|++++|+|
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 80 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFS 80 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEEE
Confidence 58999999999999999999999874 34444433222 2 22346789999999999988888888899999999999
Q ss_pred CCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhH--------HHhhhCCCcCCCCce-EEEEeccccCC
Q 029446 94 SLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPME--------VCEGLGLFDLKNRKW-HIQGTCALKGD 164 (193)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~--------~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 164 (193)
++++.++......|...+.... .+.|+++|+||+|+.+...... +............+. +++++||++|+
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~ 159 (171)
T cd00157 81 VDSPSSFENVKTKWIPEIRHYC-PNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQE 159 (171)
T ss_pred CCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCCC
Confidence 9999999887764444444322 4799999999999877543211 111111111122333 89999999999
Q ss_pred CHHHHHHHHHH
Q 029446 165 GLYEGLDWLAS 175 (193)
Q Consensus 165 gi~~~~~~l~~ 175 (193)
|+++++++|.+
T Consensus 160 gi~~l~~~i~~ 170 (171)
T cd00157 160 GVKEVFEEAIR 170 (171)
T ss_pred CHHHHHHHHhh
Confidence 99999999875
No 124
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.96 E-value=5.1e-27 Score=169.89 Aligned_cols=163 Identities=23% Similarity=0.348 Sum_probs=132.1
Q ss_pred hhcCCCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEEEEEE----cCEEEEEEecCCCCCCHHhHHhhhcCC
Q 029446 11 VFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVEKVQY----KNVIFTVWDVGGQEKLRPLWRHYFNNT 85 (193)
Q Consensus 11 ~~~~~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~~~~----~~~~~~i~D~~g~~~~~~~~~~~~~~~ 85 (193)
.......+||+++|++|||||||++++..+.+. .+.+|.+.++....+ ..+.+.+||++|++.+...+..++.++
T Consensus 3 ~~~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~ 82 (215)
T PTZ00132 3 QMDEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKG 82 (215)
T ss_pred cccCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccC
Confidence 345567899999999999999999988877775 567888887765443 468999999999999999999999999
Q ss_pred CEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCC
Q 029446 86 DGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDG 165 (193)
Q Consensus 86 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 165 (193)
+++++|+|+++..++..+..|+..+.... .+.|+++++||+|+.+.....+... + .+..++.++++||++|.|
T Consensus 83 ~~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~i~lv~nK~Dl~~~~~~~~~~~-~----~~~~~~~~~e~Sa~~~~~ 155 (215)
T PTZ00132 83 QCAIIMFDVTSRITYKNVPNWHRDIVRVC--ENIPIVLVGNKVDVKDRQVKARQIT-F----HRKKNLQYYDISAKSNYN 155 (215)
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECccCccccCCHHHHH-H----HHHcCCEEEEEeCCCCCC
Confidence 99999999999999999999988876542 5789999999999865422222211 1 123445899999999999
Q ss_pred HHHHHHHHHHHHHhh
Q 029446 166 LYEGLDWLASTLKEM 180 (193)
Q Consensus 166 i~~~~~~l~~~~~~~ 180 (193)
+++.+.+|.+.+...
T Consensus 156 v~~~f~~ia~~l~~~ 170 (215)
T PTZ00132 156 FEKPFLWLARRLTND 170 (215)
T ss_pred HHHHHHHHHHHHhhc
Confidence 999999999988654
No 125
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.96 E-value=1.8e-27 Score=168.72 Aligned_cols=163 Identities=19% Similarity=0.230 Sum_probs=118.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE-EEEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEE
Q 029446 17 EMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE-KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVV 92 (193)
Q Consensus 17 ~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~-~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (193)
+.|++++|++|+|||||++++..+.+. .+.+|....+. .+.. ....+.+||++|++.+.......+.++|++++|+
T Consensus 1 ~~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~ 80 (187)
T cd04129 1 RRKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF 80 (187)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence 368999999999999999999977765 34455544433 2333 3467899999999988877777789999999999
Q ss_pred ECCChhhHHHHHH-HHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH-------hHHHhhhCCCcCCCCc-eEEEEeccccC
Q 029446 93 DSLDRERIGKAKQ-EFQAIIKDPFMLNSVILVFANKQDMKGAMTP-------MEVCEGLGLFDLKNRK-WHIQGTCALKG 163 (193)
Q Consensus 93 d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-------~~~~~~~~~~~~~~~~-~~~~~~Sa~~~ 163 (193)
|+++.++++++.. |+..+.... .+.|+|+|+||+|+.+.... ..+........++..+ .++++|||++|
T Consensus 81 ~i~~~~s~~~~~~~~~~~i~~~~--~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~ 158 (187)
T cd04129 81 AVDTPDSLENVRTKWIEEVRRYC--PNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTG 158 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCC
Confidence 9999999999975 666554432 46999999999998542110 0000000001112233 37999999999
Q ss_pred CCHHHHHHHHHHHHHhhh
Q 029446 164 DGLYEGLDWLASTLKEMR 181 (193)
Q Consensus 164 ~gi~~~~~~l~~~~~~~~ 181 (193)
.|++++|+++.+.+...+
T Consensus 159 ~~v~~~f~~l~~~~~~~~ 176 (187)
T cd04129 159 EGVDDVFEAATRAALLVR 176 (187)
T ss_pred CCHHHHHHHHHHHHhccc
Confidence 999999999998886555
No 126
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.95 E-value=7.7e-28 Score=170.39 Aligned_cols=163 Identities=24% Similarity=0.280 Sum_probs=137.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE---EEEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEE
Q 029446 16 SEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE---KVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYV 91 (193)
Q Consensus 16 ~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~---~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 91 (193)
+.+||+++|.+|+|||+|+.++..+.+. .+.||++..+. .++.....+.|+||+|++++......++++.+++++|
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lV 81 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLV 81 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCccccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEE
Confidence 5789999999999999999999999998 56788876554 3444568899999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHH
Q 029446 92 VDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLD 171 (193)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~ 171 (193)
|+++++.||+.+..++..+.+.......|+++|+||+|+... .++..+.+...+..++++|+++||+.+.+++++|.
T Consensus 82 ysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~---R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~ 158 (196)
T KOG0395|consen 82 YSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERE---RQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFY 158 (196)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhc---cccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHH
Confidence 999999999999999999966666667899999999999874 22222222222567777899999999999999999
Q ss_pred HHHHHHHhhh
Q 029446 172 WLASTLKEMR 181 (193)
Q Consensus 172 ~l~~~~~~~~ 181 (193)
.|.+.+...+
T Consensus 159 ~L~r~~~~~~ 168 (196)
T KOG0395|consen 159 ELVREIRLPR 168 (196)
T ss_pred HHHHHHHhhh
Confidence 9999887633
No 127
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.1e-27 Score=155.32 Aligned_cols=164 Identities=18% Similarity=0.295 Sum_probs=137.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE----EEEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEE
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE----KVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLI 89 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~----~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (193)
++.||-+++|+-|+|||+|+..+..+.|. +++.|+|+.+. .+....++++||||.|+++|+...+.+++++-+.+
T Consensus 9 syifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagal 88 (215)
T KOG0097|consen 9 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 88 (215)
T ss_pred hheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhcccccee
Confidence 46789999999999999999999999887 67888887764 34446799999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCcCCCCceEEEEeccccCCCHHH
Q 029446 90 YVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT-PMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYE 168 (193)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 168 (193)
.|+|++++.++..+..|+.+..+.. .++..+++++||.|+....+ ..+..+.+ ++..+..++++||++|+++++
T Consensus 89 mvyditrrstynhlsswl~dar~lt-npnt~i~lignkadle~qrdv~yeeak~f----aeengl~fle~saktg~nved 163 (215)
T KOG0097|consen 89 MVYDITRRSTYNHLSSWLTDARNLT-NPNTVIFLIGNKADLESQRDVTYEEAKEF----AEENGLMFLEASAKTGQNVED 163 (215)
T ss_pred EEEEehhhhhhhhHHHHHhhhhccC-CCceEEEEecchhhhhhcccCcHHHHHHH----HhhcCeEEEEecccccCcHHH
Confidence 9999999999999999999987643 36788999999999987532 22223333 245566899999999999999
Q ss_pred HHHHHHHHHHhhhcc
Q 029446 169 GLDWLASTLKEMRAA 183 (193)
Q Consensus 169 ~~~~l~~~~~~~~~~ 183 (193)
.|-...+++++....
T Consensus 164 afle~akkiyqniqd 178 (215)
T KOG0097|consen 164 AFLETAKKIYQNIQD 178 (215)
T ss_pred HHHHHHHHHHHhhhc
Confidence 999999999877654
No 128
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.95 E-value=1.6e-29 Score=162.18 Aligned_cols=157 Identities=22% Similarity=0.366 Sum_probs=129.0
Q ss_pred EEcCCCCCHHHHHHHHhcCCccc--cccccceeEEE----EEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECC
Q 029446 22 MLGLDAAGKTTILYKLHIGEVLS--TVPTIGFNVEK----VQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL 95 (193)
Q Consensus 22 v~G~~~~GKssli~~l~~~~~~~--~~~t~~~~~~~----~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~ 95 (193)
++|++++|||+|+-++-.+.|.. ..+|+|+++.. +....+++++|||.||++|++....|++.+|++++++|+.
T Consensus 2 llgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydia 81 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIA 81 (192)
T ss_pred ccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecc
Confidence 68999999999999988887763 35889988764 3335789999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC-----CCHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHH
Q 029446 96 DRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA-----MTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGL 170 (193)
Q Consensus 96 ~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~ 170 (193)
+..||++...|+.++... ......+.+++||+|+.++ ++-+.+.+ ..++|+.++||++|.|++-.|
T Consensus 82 nkasfdn~~~wlsei~ey-~k~~v~l~llgnk~d~a~er~v~~ddg~kla~--------~y~ipfmetsaktg~nvd~af 152 (192)
T KOG0083|consen 82 NKASFDNCQAWLSEIHEY-AKEAVALMLLGNKCDLAHERAVKRDDGEKLAE--------AYGIPFMETSAKTGFNVDLAF 152 (192)
T ss_pred cchhHHHHHHHHHHHHHH-HHhhHhHhhhccccccchhhccccchHHHHHH--------HHCCCceeccccccccHhHHH
Confidence 999999999999998654 3356778999999999764 23334444 445589999999999999999
Q ss_pred HHHHHHHHhhhccCCCCC
Q 029446 171 DWLASTLKEMRAAGYSSV 188 (193)
Q Consensus 171 ~~l~~~~~~~~~~~~~~~ 188 (193)
-.|.+.+.+..- +.++.
T Consensus 153 ~~ia~~l~k~~~-~~~~~ 169 (192)
T KOG0083|consen 153 LAIAEELKKLKM-GAPPE 169 (192)
T ss_pred HHHHHHHHHhcc-CCCCC
Confidence 999998865543 44443
No 129
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.95 E-value=9.6e-27 Score=165.88 Aligned_cols=146 Identities=22% Similarity=0.319 Sum_probs=111.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE--EEEE-------cCEEEEEEecCCCCCCHHhHHhhhcCCCE
Q 029446 18 MRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE--KVQY-------KNVIFTVWDVGGQEKLRPLWRHYFNNTDG 87 (193)
Q Consensus 18 ~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~-------~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 87 (193)
+||+++|++++|||||++++.++.+. .+.+|++.++. .+.+ ..+.+.+||++|+++++..+..+++++|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 58999999999999999999999887 45688875543 2333 35789999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHcCC------------------CCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCc
Q 029446 88 LIYVVDSLDRERIGKAKQEFQAIIKDP------------------FMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFD 147 (193)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~------------------~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~ 147 (193)
+|+|||++++.+|+++..|+.++.... ...+.|+|+|+||+|+.++. ........-+ ..
T Consensus 81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~-~i 159 (202)
T cd04102 81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARG-FV 159 (202)
T ss_pred EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhh-hH
Confidence 999999999999999999999986531 12468999999999987642 1111111111 11
Q ss_pred CCCCceEEEEeccccCC
Q 029446 148 LKNRKWHIQGTCALKGD 164 (193)
Q Consensus 148 ~~~~~~~~~~~Sa~~~~ 164 (193)
+.+.+.+.++.+|+...
T Consensus 160 a~~~~~~~i~~~c~~~~ 176 (202)
T cd04102 160 AEQGNAEEINLNCTNGR 176 (202)
T ss_pred HHhcCCceEEEecCCcc
Confidence 34556677777887543
No 130
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.95 E-value=2.5e-26 Score=160.10 Aligned_cols=153 Identities=18% Similarity=0.168 Sum_probs=109.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc--c-ccccceeEEEEEEcCEEEEEEecCCCCCC----H-----HhHHhhhcCC
Q 029446 18 MRVVMLGLDAAGKTTILYKLHIGEVLS--T-VPTIGFNVEKVQYKNVIFTVWDVGGQEKL----R-----PLWRHYFNNT 85 (193)
Q Consensus 18 ~~v~v~G~~~~GKssli~~l~~~~~~~--~-~~t~~~~~~~~~~~~~~~~i~D~~g~~~~----~-----~~~~~~~~~~ 85 (193)
.+|+++|++|+|||||++++.+..+.. + .+|.+.....+......+.+|||||+... + .........+
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~ 80 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHLR 80 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhcc
Confidence 479999999999999999999987642 1 23555666666667789999999997421 0 1111112346
Q ss_pred CEEEEEEECCChhhH--HHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccC
Q 029446 86 DGLIYVVDSLDRERI--GKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKG 163 (193)
Q Consensus 86 d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (193)
|++++|+|+++..++ +....|+..+... ..+.|+|+|+||+|+.......+. +.+ .+....++++|||++|
T Consensus 81 d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~~-~~~----~~~~~~~~~~~Sa~~~ 153 (168)
T cd01897 81 AAVLFLFDPSETCGYSLEEQLSLFEEIKPL--FKNKPVIVVLNKIDLLTFEDLSEI-EEE----EELEGEEVLKISTLTE 153 (168)
T ss_pred CcEEEEEeCCcccccchHHHHHHHHHHHhh--cCcCCeEEEEEccccCchhhHHHH-HHh----hhhccCceEEEEeccc
Confidence 899999999987543 5555666665432 147899999999999765333321 111 1234568999999999
Q ss_pred CCHHHHHHHHHHHH
Q 029446 164 DGLYEGLDWLASTL 177 (193)
Q Consensus 164 ~gi~~~~~~l~~~~ 177 (193)
.|++++++++.+.+
T Consensus 154 ~gi~~l~~~l~~~~ 167 (168)
T cd01897 154 EGVDEVKNKACELL 167 (168)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999998876
No 131
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.94 E-value=5.4e-26 Score=158.64 Aligned_cols=155 Identities=23% Similarity=0.177 Sum_probs=110.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCcc--c-cccccceeEEEEEEcCE-EEEEEecCCCCC----C---HHhHHhhhcCCCE
Q 029446 19 RVVMLGLDAAGKTTILYKLHIGEVL--S-TVPTIGFNVEKVQYKNV-IFTVWDVGGQEK----L---RPLWRHYFNNTDG 87 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~~~~~--~-~~~t~~~~~~~~~~~~~-~~~i~D~~g~~~----~---~~~~~~~~~~~d~ 87 (193)
+|+++|.+|||||||+|++.+.... . ..+|....+..+..... .+.+|||||..+ . ...+...+..+|+
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 81 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKGLGHRFLRHIERTRL 81 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCCCeEEEEecCcccCcccccCCchHHHHHHHHhCCE
Confidence 6899999999999999999976542 1 12344445555555554 899999999632 1 1122223456999
Q ss_pred EEEEEECCCh-hhHHHHHHHHHHHHcCC-CCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCC
Q 029446 88 LIYVVDSLDR-ERIGKAKQEFQAIIKDP-FMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDG 165 (193)
Q Consensus 88 ~i~v~d~~~~-~s~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 165 (193)
+++|+|++++ .+++....|...+.... ...+.|+++|+||+|+.+.....+....+.. +....+++++||+++.|
T Consensus 82 vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~---~~~~~~~~~~Sa~~~~g 158 (170)
T cd01898 82 LLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKELLK---ELWGKPVFPISALTGEG 158 (170)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHHHHHHHh---hCCCCCEEEEecCCCCC
Confidence 9999999998 78888887777765432 1246899999999999775443333222211 11345799999999999
Q ss_pred HHHHHHHHHHH
Q 029446 166 LYEGLDWLAST 176 (193)
Q Consensus 166 i~~~~~~l~~~ 176 (193)
++++++++.+.
T Consensus 159 i~~l~~~i~~~ 169 (170)
T cd01898 159 LDELLRKLAEL 169 (170)
T ss_pred HHHHHHHHHhh
Confidence 99999999875
No 132
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.94 E-value=5.9e-26 Score=157.43 Aligned_cols=149 Identities=21% Similarity=0.086 Sum_probs=104.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC---cc-cc--ccccceeEEEEEEc-CEEEEEEecCCCCCCHHhHHhhhcCCCEEEE
Q 029446 18 MRVVMLGLDAAGKTTILYKLHIGE---VL-ST--VPTIGFNVEKVQYK-NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIY 90 (193)
Q Consensus 18 ~~v~v~G~~~~GKssli~~l~~~~---~~-~~--~~t~~~~~~~~~~~-~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 90 (193)
+.|+++|++|+|||||+++|.+.. +. +. ..|.+..+..+... ...+.+|||||++++......+++++|++++
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~ 80 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKFIKNMLAGAGGIDLVLL 80 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHHHHHHHhhhhcCCEEEE
Confidence 468999999999999999999643 22 11 23445555555554 7789999999999888777778889999999
Q ss_pred EEECCC---hhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH----hHHHhhhCCCcCCCCceEEEEeccccC
Q 029446 91 VVDSLD---RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP----MEVCEGLGLFDLKNRKWHIQGTCALKG 163 (193)
Q Consensus 91 v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (193)
|+|+++ +++.+.+. . .... ...|+++|+||+|+.+.... +++.+.+... ...+.+++++||+++
T Consensus 81 V~d~~~~~~~~~~~~~~----~-~~~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Sa~~~ 151 (164)
T cd04171 81 VVAADEGIMPQTREHLE----I-LELL--GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGT--FLADAPIFPVSAVTG 151 (164)
T ss_pred EEECCCCccHhHHHHHH----H-HHHh--CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhc--CcCCCcEEEEeCCCC
Confidence 999986 33333221 1 1111 12489999999999764211 2222222211 013568999999999
Q ss_pred CCHHHHHHHHHH
Q 029446 164 DGLYEGLDWLAS 175 (193)
Q Consensus 164 ~gi~~~~~~l~~ 175 (193)
+|++++++.+.+
T Consensus 152 ~~v~~l~~~l~~ 163 (164)
T cd04171 152 EGIEELKEYLDE 163 (164)
T ss_pred cCHHHHHHHHhh
Confidence 999999998754
No 133
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.94 E-value=2.5e-28 Score=164.08 Aligned_cols=163 Identities=18% Similarity=0.264 Sum_probs=136.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEEE----EEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEE
Q 029446 16 SEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVEK----VQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIY 90 (193)
Q Consensus 16 ~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~----~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 90 (193)
..+|++|+|+.++||||+|+++|.+-|. ++..|+++++.. +...++.+.+||++|+++|..+...|++++.+.++
T Consensus 19 ~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~vL 98 (246)
T KOG4252|consen 19 RAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASVL 98 (246)
T ss_pred hhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccceEE
Confidence 5689999999999999999999999887 677888887653 44567889999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHH
Q 029446 91 VVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGL 170 (193)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~ 170 (193)
||+.+++.+|++...|..++..+. ..+|.++|-||+|+.+... +...+....++..+..++.+|++...|+..+|
T Consensus 99 VFSTTDr~SFea~~~w~~kv~~e~--~~IPtV~vqNKIDlveds~---~~~~evE~lak~l~~RlyRtSvked~NV~~vF 173 (246)
T KOG4252|consen 99 VFSTTDRYSFEATLEWYNKVQKET--ERIPTVFVQNKIDLVEDSQ---MDKGEVEGLAKKLHKRLYRTSVKEDFNVMHVF 173 (246)
T ss_pred EEecccHHHHHHHHHHHHHHHHHh--ccCCeEEeeccchhhHhhh---cchHHHHHHHHHhhhhhhhhhhhhhhhhHHHH
Confidence 999999999999999999997754 5799999999999987521 11111111223445578999999999999999
Q ss_pred HHHHHHHHhhhcc
Q 029446 171 DWLASTLKEMRAA 183 (193)
Q Consensus 171 ~~l~~~~~~~~~~ 183 (193)
..|+.++.++...
T Consensus 174 ~YLaeK~~q~~kq 186 (246)
T KOG4252|consen 174 AYLAEKLTQQKKQ 186 (246)
T ss_pred HHHHHHHHHHHHH
Confidence 9999988766543
No 134
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.94 E-value=1.2e-25 Score=179.46 Aligned_cols=166 Identities=22% Similarity=0.273 Sum_probs=116.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccccccccce----eEEEEEEcCEEEEEEecCCCCC--------CHHhHHhhhc
Q 029446 16 SEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGF----NVEKVQYKNVIFTVWDVGGQEK--------LRPLWRHYFN 83 (193)
Q Consensus 16 ~~~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~----~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~~~ 83 (193)
..++|+|+|.+|||||||+|++++.......++.++ ....+.+.+..+.+|||||.+. +...+..+++
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 116 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAMR 116 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHHH
Confidence 457999999999999999999998765433333332 3344556778899999999763 3344566788
Q ss_pred CCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccC
Q 029446 84 NTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKG 163 (193)
Q Consensus 84 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (193)
.+|++++|+|+++..+... ..+...+.. .++|+|+|+||+|+............++. + ..+++||++|
T Consensus 117 ~aD~il~VvD~~~~~s~~~--~~i~~~l~~---~~~piilV~NK~Dl~~~~~~~~~~~~~g~------~-~~~~iSA~~g 184 (472)
T PRK03003 117 TADAVLFVVDATVGATATD--EAVARVLRR---SGKPVILAANKVDDERGEADAAALWSLGL------G-EPHPVSALHG 184 (472)
T ss_pred hCCEEEEEEECCCCCCHHH--HHHHHHHHH---cCCCEEEEEECccCCccchhhHHHHhcCC------C-CeEEEEcCCC
Confidence 9999999999998755432 222233332 47899999999998653211111111111 1 2478999999
Q ss_pred CCHHHHHHHHHHHHHhhhc-------------cCCCCCCcCCC
Q 029446 164 DGLYEGLDWLASTLKEMRA-------------AGYSSVGTSSF 193 (193)
Q Consensus 164 ~gi~~~~~~l~~~~~~~~~-------------~~~~~~~~~~~ 193 (193)
.|+++++++|.+.+.+... -|.+++|||||
T Consensus 185 ~gi~eL~~~i~~~l~~~~~~~~~~~~~~kI~iiG~~nvGKSSL 227 (472)
T PRK03003 185 RGVGDLLDAVLAALPEVPRVGSASGGPRRVALVGKPNVGKSSL 227 (472)
T ss_pred CCcHHHHHHHHhhcccccccccccccceEEEEECCCCCCHHHH
Confidence 9999999999998865211 27889998874
No 135
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.94 E-value=7.6e-26 Score=146.47 Aligned_cols=165 Identities=41% Similarity=0.735 Sum_probs=152.8
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEEEEEcC-EEEEEEecCCCCCCHHhHHhhhcCCCEEEEE
Q 029446 13 FGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKN-VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYV 91 (193)
Q Consensus 13 ~~~~~~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~-~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 91 (193)
.+++.++++++|-.++|||||++.|.+.......||.|++...+.+.+ ..+.+||.+|+...+..|..|+.+.|++|||
T Consensus 13 ~t~rEirilllGldnAGKTT~LKqL~sED~~hltpT~GFn~k~v~~~g~f~LnvwDiGGqr~IRpyWsNYyenvd~lIyV 92 (185)
T KOG0074|consen 13 RTRREIRILLLGLDNAGKTTFLKQLKSEDPRHLTPTNGFNTKKVEYDGTFHLNVWDIGGQRGIRPYWSNYYENVDGLIYV 92 (185)
T ss_pred CCcceEEEEEEecCCCcchhHHHHHccCChhhccccCCcceEEEeecCcEEEEEEecCCccccchhhhhhhhccceEEEE
Confidence 447899999999999999999999998888888999999999998854 9999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHH
Q 029446 92 VDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLD 171 (193)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~ 171 (193)
+|.++...|+++.+.+.+++........|+.+..||-|+......++....+++..++.+.+.+.+|||.+++|+.+-.+
T Consensus 93 IDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~eeia~klnl~~lrdRswhIq~csals~eg~~dg~~ 172 (185)
T KOG0074|consen 93 IDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVEEIALKLNLAGLRDRSWHIQECSALSLEGSTDGSD 172 (185)
T ss_pred EeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchHHHHHhcchhhhhhceEEeeeCccccccCccCcch
Confidence 99999999999999999998887788899999999999999888899999999888888899999999999999999888
Q ss_pred HHHHHH
Q 029446 172 WLASTL 177 (193)
Q Consensus 172 ~l~~~~ 177 (193)
|+....
T Consensus 173 wv~sn~ 178 (185)
T KOG0074|consen 173 WVQSNP 178 (185)
T ss_pred hhhcCC
Confidence 876544
No 136
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.94 E-value=2.7e-25 Score=159.63 Aligned_cols=154 Identities=20% Similarity=0.196 Sum_probs=110.8
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc---cccccceeEEEEEEcC-EEEEEEecCCCCC---------CHHhHHh
Q 029446 14 GNSEMRVVMLGLDAAGKTTILYKLHIGEVLS---TVPTIGFNVEKVQYKN-VIFTVWDVGGQEK---------LRPLWRH 80 (193)
Q Consensus 14 ~~~~~~v~v~G~~~~GKssli~~l~~~~~~~---~~~t~~~~~~~~~~~~-~~~~i~D~~g~~~---------~~~~~~~ 80 (193)
.+..++|+++|++|||||||+|++++..+.. ..+|.......+...+ ..+.+|||||..+ +...+ .
T Consensus 38 ~~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~-~ 116 (204)
T cd01878 38 RSGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPHQLVEAFRSTL-E 116 (204)
T ss_pred hcCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCCceEEEeCCCccccCCCHHHHHHHHHHH-H
Confidence 3556899999999999999999999986431 2455555555555544 4899999999732 11111 2
Q ss_pred hhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEecc
Q 029446 81 YFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCA 160 (193)
Q Consensus 81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (193)
.+.++|++++|+|++++.++.....+...+ ......+.|+++|+||+|+.+..... . .......+++++||
T Consensus 117 ~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l-~~~~~~~~~viiV~NK~Dl~~~~~~~---~-----~~~~~~~~~~~~Sa 187 (204)
T cd01878 117 EVAEADLLLHVVDASDPDYEEQIETVEKVL-KELGAEDIPMILVLNKIDLLDDEELE---E-----RLEAGRPDAVFISA 187 (204)
T ss_pred HHhcCCeEEEEEECCCCChhhHHHHHHHHH-HHcCcCCCCEEEEEEccccCChHHHH---H-----HhhcCCCceEEEEc
Confidence 356899999999999888777665444433 32233578999999999997653222 1 12234457999999
Q ss_pred ccCCCHHHHHHHHHHHH
Q 029446 161 LKGDGLYEGLDWLASTL 177 (193)
Q Consensus 161 ~~~~gi~~~~~~l~~~~ 177 (193)
+++.|+++++++|.+.+
T Consensus 188 ~~~~gi~~l~~~L~~~~ 204 (204)
T cd01878 188 KTGEGLDELLEAIEELL 204 (204)
T ss_pred CCCCCHHHHHHHHHhhC
Confidence 99999999999998753
No 137
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.94 E-value=2.4e-25 Score=169.56 Aligned_cols=160 Identities=22% Similarity=0.171 Sum_probs=118.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcc--cc-ccccceeEEEEEE-cCEEEEEEecCCCCC-------CHHhHHhhhcCCC
Q 029446 18 MRVVMLGLDAAGKTTILYKLHIGEVL--ST-VPTIGFNVEKVQY-KNVIFTVWDVGGQEK-------LRPLWRHYFNNTD 86 (193)
Q Consensus 18 ~~v~v~G~~~~GKssli~~l~~~~~~--~~-~~t~~~~~~~~~~-~~~~~~i~D~~g~~~-------~~~~~~~~~~~~d 86 (193)
..|+++|.||||||||+|++++.... .+ .+|...+...+.+ +..++.+||+||..+ ....+...++.++
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~ 238 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIERTR 238 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhhhcC
Confidence 57999999999999999999986533 33 4677777777777 567899999999532 2222334456799
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHcCC-CCCCCeEEEEEeCCCCCCCCCHhH-HHhhhCCCcCCCCceEEEEeccccCC
Q 029446 87 GLIYVVDSLDRERIGKAKQEFQAIIKDP-FMLNSVILVFANKQDMKGAMTPME-VCEGLGLFDLKNRKWHIQGTCALKGD 164 (193)
Q Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (193)
++++|+|+++.++++....|..++.... ...++|+++|+||+|+.+.....+ ..+.. .+..+.+++++||++++
T Consensus 239 vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~----~~~~~~~i~~iSAktg~ 314 (335)
T PRK12299 239 LLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALE----LAALGGPVFLISAVTGE 314 (335)
T ss_pred EEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHH----HHhcCCCEEEEEcCCCC
Confidence 9999999998878888888877775532 234789999999999976533221 11111 12233579999999999
Q ss_pred CHHHHHHHHHHHHHhhh
Q 029446 165 GLYEGLDWLASTLKEMR 181 (193)
Q Consensus 165 gi~~~~~~l~~~~~~~~ 181 (193)
|+++++++|.+.+.+..
T Consensus 315 GI~eL~~~L~~~l~~~~ 331 (335)
T PRK12299 315 GLDELLRALWELLEEAR 331 (335)
T ss_pred CHHHHHHHHHHHHHhhh
Confidence 99999999999886543
No 138
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.94 E-value=2.6e-25 Score=156.54 Aligned_cols=149 Identities=15% Similarity=0.174 Sum_probs=107.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC-------cc-cccc------ccceeEE----EE-----EEcCEEEEEEecCCCCCCH
Q 029446 19 RVVMLGLDAAGKTTILYKLHIGE-------VL-STVP------TIGFNVE----KV-----QYKNVIFTVWDVGGQEKLR 75 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~~~-------~~-~~~~------t~~~~~~----~~-----~~~~~~~~i~D~~g~~~~~ 75 (193)
+|+++|++++|||||+++|++.. +. .+.+ +.+.+.. .+ ....+.+.+|||||+.++.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 68999999999999999998742 11 1112 2223322 12 2246789999999999999
Q ss_pred HhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH---hHHHhhhCCCcCCCCc
Q 029446 76 PLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP---MEVCEGLGLFDLKNRK 152 (193)
Q Consensus 76 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~---~~~~~~~~~~~~~~~~ 152 (193)
..+..+++++|++++|+|+++..+.+....|.. ... .++|+++|+||+|+.+.... +++.+.++.. .
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~-~~~----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~-----~ 151 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYL-ALE----NNLEIIPVINKIDLPSADPERVKQQIEDVLGLD-----P 151 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHH-HHH----cCCCEEEEEECCCCCcCCHHHHHHHHHHHhCCC-----c
Confidence 999999999999999999998766655544433 222 46889999999998653211 2333333221 1
Q ss_pred eEEEEeccccCCCHHHHHHHHHHHH
Q 029446 153 WHIQGTCALKGDGLYEGLDWLASTL 177 (193)
Q Consensus 153 ~~~~~~Sa~~~~gi~~~~~~l~~~~ 177 (193)
..++++||++|+|+++++++|.+.+
T Consensus 152 ~~~~~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 152 SEAILVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred ccEEEeeccCCCCHHHHHHHHHhhC
Confidence 2589999999999999999998875
No 139
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.93 E-value=2.7e-26 Score=159.42 Aligned_cols=165 Identities=22% Similarity=0.252 Sum_probs=127.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE---EEE-EcCEEEEEEecCCCCCCHHhHHhhhcCCCEEE
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE---KVQ-YKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLI 89 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~---~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (193)
....|+.|||+.++|||+|+..+..+.|+ .+.||+-.++. .+. ...+.+.+|||.||++|..+++..+.++|+++
T Consensus 2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl 81 (198)
T KOG0393|consen 2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFL 81 (198)
T ss_pred ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEE
Confidence 35689999999999999999999999988 56788865543 343 56789999999999999999988999999999
Q ss_pred EEEECCChhhHHHHHH-HHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHh-HHHhh--------hCCCcCCCCc-eEEEEe
Q 029446 90 YVVDSLDRERIGKAKQ-EFQAIIKDPFMLNSVILVFANKQDMKGAMTPM-EVCEG--------LGLFDLKNRK-WHIQGT 158 (193)
Q Consensus 90 ~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~-~~~~~--------~~~~~~~~~~-~~~~~~ 158 (193)
+||++.++.+|+++.. |+.++.+. . ++.|+|+|++|.||.+..... ++.+. .+...++..+ ..|++|
T Consensus 82 ~cfsv~~p~S~~nv~~kW~pEi~~~-c-p~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~Ec 159 (198)
T KOG0393|consen 82 LCFSVVSPESFENVKSKWIPEIKHH-C-PNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLEC 159 (198)
T ss_pred EEEEcCChhhHHHHHhhhhHHHHhh-C-CCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeee
Confidence 9999999999999775 55555443 3 899999999999999532111 11110 0111112233 479999
Q ss_pred ccccCCCHHHHHHHHHHHHHhhh
Q 029446 159 CALKGDGLYEGLDWLASTLKEMR 181 (193)
Q Consensus 159 Sa~~~~gi~~~~~~l~~~~~~~~ 181 (193)
||++..|++++|+..+.......
T Consensus 160 Sa~tq~~v~~vF~~a~~~~l~~~ 182 (198)
T KOG0393|consen 160 SALTQKGVKEVFDEAIRAALRPP 182 (198)
T ss_pred hhhhhCCcHHHHHHHHHHHhccc
Confidence 99999999999999988876543
No 140
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.93 E-value=8.2e-25 Score=152.34 Aligned_cols=154 Identities=26% Similarity=0.177 Sum_probs=109.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCcccc---ccccceeEEEEEE---cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEE
Q 029446 19 RVVMLGLDAAGKTTILYKLHIGEVLST---VPTIGFNVEKVQY---KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVV 92 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~~~~~~~---~~t~~~~~~~~~~---~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (193)
.|+++|.+|+|||||+++|..+.+... .+|.......+.. ....+.+|||||+..+...+..++..+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 589999999999999999998876642 2333333334444 3678999999999999988888889999999999
Q ss_pred ECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHh---hhCCCc--CCCCceEEEEeccccCCCHH
Q 029446 93 DSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCE---GLGLFD--LKNRKWHIQGTCALKGDGLY 167 (193)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~---~~~~~~--~~~~~~~~~~~Sa~~~~gi~ 167 (193)
|+++....+.. ..+..+ .. .+.|+++|+||+|+.... ...+.. .+.... .....++++++||++++|++
T Consensus 82 d~~~~~~~~~~-~~~~~~-~~---~~~p~ivv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 155 (168)
T cd01887 82 AADDGVMPQTI-EAIKLA-KA---ANVPFIVALNKIDKPNAN-PERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGID 155 (168)
T ss_pred ECCCCccHHHH-HHHHHH-HH---cCCCEEEEEEceeccccc-HHHHHHHHHHhhccccccccCcCcEEEeecccCCCHH
Confidence 99874322211 122222 21 468999999999987542 222221 121110 11234689999999999999
Q ss_pred HHHHHHHHHHH
Q 029446 168 EGLDWLASTLK 178 (193)
Q Consensus 168 ~~~~~l~~~~~ 178 (193)
+++++|.++..
T Consensus 156 ~l~~~l~~~~~ 166 (168)
T cd01887 156 DLLEAILLLAE 166 (168)
T ss_pred HHHHHHHHhhh
Confidence 99999988764
No 141
>PLN00023 GTP-binding protein; Provisional
Probab=99.93 E-value=3.9e-24 Score=159.78 Aligned_cols=122 Identities=21% Similarity=0.382 Sum_probs=103.4
Q ss_pred hcCCCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE--EEEE---------------cCEEEEEEecCCCCC
Q 029446 12 FFGNSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE--KVQY---------------KNVIFTVWDVGGQEK 73 (193)
Q Consensus 12 ~~~~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~---------------~~~~~~i~D~~g~~~ 73 (193)
..+...+||+++|+.|||||||++++.++.+. .+.+|++.++. .+.+ ..+.+.||||+|+++
T Consensus 16 ~~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqEr 95 (334)
T PLN00023 16 GPPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHER 95 (334)
T ss_pred CCCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChh
Confidence 45667899999999999999999999998886 45688887653 3333 247799999999999
Q ss_pred CHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCC-----------CCCCeEEEEEeCCCCCCC
Q 029446 74 LRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPF-----------MLNSVILVFANKQDMKGA 133 (193)
Q Consensus 74 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-----------~~~~p~ivv~nK~Dl~~~ 133 (193)
|+.++..++++++++|+|||++++.+++++..|+..+..... ..+.|+|||+||+|+...
T Consensus 96 frsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~ 166 (334)
T PLN00023 96 YKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPK 166 (334)
T ss_pred hhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccc
Confidence 999999999999999999999999999999999998875421 235899999999999654
No 142
>PRK04213 GTP-binding protein; Provisional
Probab=99.93 E-value=9.8e-26 Score=161.59 Aligned_cols=163 Identities=23% Similarity=0.280 Sum_probs=106.5
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccceeEEEEEEcCEEEEEEecCC-----------CCCCHHhHHh
Q 029446 13 FGNSEMRVVMLGLDAAGKTTILYKLHIGEVLS-TVPTIGFNVEKVQYKNVIFTVWDVGG-----------QEKLRPLWRH 80 (193)
Q Consensus 13 ~~~~~~~v~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~i~D~~g-----------~~~~~~~~~~ 80 (193)
++...++|+++|.+|+|||||+|++.+..+.. ..+++......+... .+.+||||| ++.++..+..
T Consensus 5 ~~~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 82 (201)
T PRK04213 5 RPDRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRKPNHYDWG--DFILTDLPGFGFMSGVPKEVQEKIKDEIVR 82 (201)
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeCceEEeec--ceEEEeCCccccccccCHHHHHHHHHHHHH
Confidence 34567899999999999999999999877542 233333333333333 689999999 4556655555
Q ss_pred hhc----CCCEEEEEEECCChhhH-HH--------HHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCC
Q 029446 81 YFN----NTDGLIYVVDSLDRERI-GK--------AKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGL 145 (193)
Q Consensus 81 ~~~----~~d~~i~v~d~~~~~s~-~~--------~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~ 145 (193)
++. .++++++|+|.+....+ +. ....+...... .+.|+++|+||+|+.+.. ..+++.+.++.
T Consensus 83 ~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~ 159 (201)
T PRK04213 83 YIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE---LGIPPIVAVNKMDKIKNRDEVLDEIAERLGL 159 (201)
T ss_pred HHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH---cCCCeEEEEECccccCcHHHHHHHHHHHhcC
Confidence 543 46788899998643211 00 00111222222 478999999999987643 23344454543
Q ss_pred C-cCCCCceEEEEeccccCCCHHHHHHHHHHHHHhhh
Q 029446 146 F-DLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEMR 181 (193)
Q Consensus 146 ~-~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~ 181 (193)
. ..+..+.+++++||++| |+++++++|.+.+.+..
T Consensus 160 ~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~~~ 195 (201)
T PRK04213 160 YPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHEAK 195 (201)
T ss_pred CccccccCCcEEEEecccC-CHHHHHHHHHHhhcCcc
Confidence 1 11222346899999999 99999999999876544
No 143
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.93 E-value=3.1e-24 Score=164.70 Aligned_cols=151 Identities=19% Similarity=0.143 Sum_probs=110.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCcc--c-cccccceeEEEEEE-cCEEEEEEecCCCC---------CCHHhHHhh
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHIGEVL--S-TVPTIGFNVEKVQY-KNVIFTVWDVGGQE---------KLRPLWRHY 81 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~--~-~~~t~~~~~~~~~~-~~~~~~i~D~~g~~---------~~~~~~~~~ 81 (193)
...++|+++|.+|+|||||+|+|++.... + ..+|.+.....+.. ++..+.+|||||.. .++..+ ..
T Consensus 187 ~~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~lie~f~~tl-e~ 265 (351)
T TIGR03156 187 ADVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVAAFRATL-EE 265 (351)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCCceEEEEecCcccccCCHHHHHHHHHHH-HH
Confidence 34599999999999999999999998643 2 35677777777777 56899999999972 233332 24
Q ss_pred hcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccc
Q 029446 82 FNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCAL 161 (193)
Q Consensus 82 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (193)
+.++|++++|+|++++.+.+....|. .++......+.|+|+|+||+|+.+.. ++..... ...+++++||+
T Consensus 266 ~~~ADlil~VvD~s~~~~~~~~~~~~-~~L~~l~~~~~piIlV~NK~Dl~~~~---~v~~~~~------~~~~~i~iSAk 335 (351)
T TIGR03156 266 VREADLLLHVVDASDPDREEQIEAVE-KVLEELGAEDIPQLLVYNKIDLLDEP---RIERLEE------GYPEAVFVSAK 335 (351)
T ss_pred HHhCCEEEEEEECCCCchHHHHHHHH-HHHHHhccCCCCEEEEEEeecCCChH---hHHHHHh------CCCCEEEEEcc
Confidence 68899999999999988776654433 33333233578999999999987542 2221111 11258999999
Q ss_pred cCCCHHHHHHHHHHH
Q 029446 162 KGDGLYEGLDWLAST 176 (193)
Q Consensus 162 ~~~gi~~~~~~l~~~ 176 (193)
+|.|+++++++|.+.
T Consensus 336 tg~GI~eL~~~I~~~ 350 (351)
T TIGR03156 336 TGEGLDLLLEAIAER 350 (351)
T ss_pred CCCCHHHHHHHHHhh
Confidence 999999999998764
No 144
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.93 E-value=7e-24 Score=145.63 Aligned_cols=153 Identities=21% Similarity=0.267 Sum_probs=115.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEEE--EEEcC--EEEEEEecCCCCCCHHhHHhhhcCCCEEEEE
Q 029446 17 EMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVEK--VQYKN--VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYV 91 (193)
Q Consensus 17 ~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~--~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 91 (193)
.+||+++|.+|+|||||++++.+..+. .+.++.+.+... +.... ..+.+||+||+..+...+..++++++.++.+
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~ 80 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV 80 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence 479999999999999999999998854 344555555544 45555 7899999999999999999889999999999
Q ss_pred EECCCh-hhHHHHH-HHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHH
Q 029446 92 VDSLDR-ERIGKAK-QEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEG 169 (193)
Q Consensus 92 ~d~~~~-~s~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~ 169 (193)
+|.... .++.... .+...+..... .+.|+++++||+|+.......+....+.. ....+++++||+++.|++++
T Consensus 81 ~d~~~~v~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~----~~~~~~~~~sa~~~~gv~~~ 155 (161)
T TIGR00231 81 FDIVILVLDVEEILEKQTKEIIHHAE-SNVPIILVGNKIDLRDAKLKTHVAFLFAK----LNGEPIIPLSAETGKNIDSA 155 (161)
T ss_pred EEEeeeehhhhhHhHHHHHHHHHhcc-cCCcEEEEEEcccCCcchhhHHHHHHHhh----ccCCceEEeecCCCCCHHHH
Confidence 999876 6666655 44444444322 27899999999999775433333333322 22346999999999999999
Q ss_pred HHHHH
Q 029446 170 LDWLA 174 (193)
Q Consensus 170 ~~~l~ 174 (193)
+++|.
T Consensus 156 ~~~l~ 160 (161)
T TIGR00231 156 FKIVE 160 (161)
T ss_pred HHHhh
Confidence 99874
No 145
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.93 E-value=3.6e-25 Score=150.19 Aligned_cols=133 Identities=21% Similarity=0.177 Sum_probs=93.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEEEEEcCEEEEEEecCCCC-----CCHHhHHhhhcCCCEEEEEEE
Q 029446 19 RVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQE-----KLRPLWRHYFNNTDGLIYVVD 93 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~-----~~~~~~~~~~~~~d~~i~v~d 93 (193)
||+++|++|+|||||+|+|.+..+. +.+|.+..+ .. .+|||||+. .+..... .++++|++++|+|
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~-~~~t~~~~~-----~~---~~iDt~G~~~~~~~~~~~~~~-~~~~ad~vilv~d 71 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL-YKKTQAVEY-----ND---GAIDTPGEYVENRRLYSALIV-TAADADVIALVQS 71 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc-cccceeEEE-----cC---eeecCchhhhhhHHHHHHHHH-HhhcCCEEEEEec
Confidence 8999999999999999999988653 334443332 22 689999973 2333333 4789999999999
Q ss_pred CCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCcCCCCc-eEEEEeccccCCCHHHHHH
Q 029446 94 SLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT-PMEVCEGLGLFDLKNRK-WHIQGTCALKGDGLYEGLD 171 (193)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~~~~ 171 (193)
++++.++... .| .... ..|+++|+||+|+.+... .++..+.. +..+ .+++++||+++.|++++++
T Consensus 72 ~~~~~s~~~~-~~-~~~~------~~p~ilv~NK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~gi~~l~~ 138 (142)
T TIGR02528 72 ATDPESRFPP-GF-ASIF------VKPVIGLVTKIDLAEADVDIERAKELL-----ETAGAEPIFEISSVDEQGLEALVD 138 (142)
T ss_pred CCCCCcCCCh-hH-HHhc------cCCeEEEEEeeccCCcccCHHHHHHHH-----HHcCCCcEEEEecCCCCCHHHHHH
Confidence 9999887552 23 2221 248999999999875322 22221111 1112 2699999999999999999
Q ss_pred HHH
Q 029446 172 WLA 174 (193)
Q Consensus 172 ~l~ 174 (193)
++.
T Consensus 139 ~l~ 141 (142)
T TIGR02528 139 YLN 141 (142)
T ss_pred HHh
Confidence 874
No 146
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.93 E-value=4.5e-24 Score=170.40 Aligned_cols=161 Identities=14% Similarity=0.095 Sum_probs=112.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCcc--cc--ccccceeEEEEEEcCEEEEEEecCCCC----------CCHHhH-Hh
Q 029446 16 SEMRVVMLGLDAAGKTTILYKLHIGEVL--ST--VPTIGFNVEKVQYKNVIFTVWDVGGQE----------KLRPLW-RH 80 (193)
Q Consensus 16 ~~~~v~v~G~~~~GKssli~~l~~~~~~--~~--~~t~~~~~~~~~~~~~~~~i~D~~g~~----------~~~~~~-~~ 80 (193)
..++|+++|.+|+|||||+|+|++.... .. +.|.......+..++..+.+|||||.. .+.... ..
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~ 289 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTHA 289 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHHHHH
Confidence 4689999999999999999999988753 22 223333334556677889999999952 222222 34
Q ss_pred hhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEecc
Q 029446 81 YFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCA 160 (193)
Q Consensus 81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (193)
+++++|++++|+|++++.+++... ++..+.. .+.|+|+|+||+|+.+.....................+++++||
T Consensus 290 ~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~----~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~SA 364 (472)
T PRK03003 290 AIEAAEVAVVLIDASEPISEQDQR-VLSMVIE----AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNISA 364 (472)
T ss_pred HHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH----cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEEC
Confidence 578999999999999887777663 3444432 47899999999999764322222222211111223357999999
Q ss_pred ccCCCHHHHHHHHHHHHHhhh
Q 029446 161 LKGDGLYEGLDWLASTLKEMR 181 (193)
Q Consensus 161 ~~~~gi~~~~~~l~~~~~~~~ 181 (193)
++|.|++++|+.+.+.+....
T Consensus 365 k~g~gv~~lf~~i~~~~~~~~ 385 (472)
T PRK03003 365 KTGRAVDKLVPALETALESWD 385 (472)
T ss_pred CCCCCHHHHHHHHHHHHHHhc
Confidence 999999999999998775443
No 147
>PRK15494 era GTPase Era; Provisional
Probab=99.92 E-value=2.6e-24 Score=164.82 Aligned_cols=156 Identities=18% Similarity=0.226 Sum_probs=109.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCcccc----ccccceeEEEEEEcCEEEEEEecCCCCC-CHHh-------HHhhh
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHIGEVLST----VPTIGFNVEKVQYKNVIFTVWDVGGQEK-LRPL-------WRHYF 82 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~~~----~~t~~~~~~~~~~~~~~~~i~D~~g~~~-~~~~-------~~~~~ 82 (193)
.+.++|+++|.+|+|||||+|+|.+..+..+ .+|.......+..++.++.+|||||..+ +..+ ....+
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l 129 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSSL 129 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHHh
Confidence 4667999999999999999999999877532 2333444455666788999999999743 2221 12346
Q ss_pred cCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEecccc
Q 029446 83 NNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALK 162 (193)
Q Consensus 83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (193)
.++|++++|+|..+ +++....++...+.. .+.|.|+|+||+|+.+. ...+..+.+.. ......++++||++
T Consensus 130 ~~aDvil~VvD~~~--s~~~~~~~il~~l~~---~~~p~IlViNKiDl~~~-~~~~~~~~l~~---~~~~~~i~~iSAkt 200 (339)
T PRK15494 130 HSADLVLLIIDSLK--SFDDITHNILDKLRS---LNIVPIFLLNKIDIESK-YLNDIKAFLTE---NHPDSLLFPISALS 200 (339)
T ss_pred hhCCEEEEEEECCC--CCCHHHHHHHHHHHh---cCCCEEEEEEhhcCccc-cHHHHHHHHHh---cCCCcEEEEEeccC
Confidence 79999999999865 445554444443332 34677899999998654 23333333321 11224799999999
Q ss_pred CCCHHHHHHHHHHHHHh
Q 029446 163 GDGLYEGLDWLASTLKE 179 (193)
Q Consensus 163 ~~gi~~~~~~l~~~~~~ 179 (193)
|.|+++++++|.+.+.+
T Consensus 201 g~gv~eL~~~L~~~l~~ 217 (339)
T PRK15494 201 GKNIDGLLEYITSKAKI 217 (339)
T ss_pred ccCHHHHHHHHHHhCCC
Confidence 99999999999988754
No 148
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.92 E-value=7.2e-24 Score=150.17 Aligned_cols=155 Identities=25% Similarity=0.196 Sum_probs=114.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccccc-------------------cccceeEEEEEEcCEEEEEEecCCCCCCHHhHH
Q 029446 19 RVVMLGLDAAGKTTILYKLHIGEVLSTV-------------------PTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWR 79 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~~~~~~~~-------------------~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~ 79 (193)
+|+++|.+|+|||||+|++++....... .+.......+......+.+||+||...+...+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~ 80 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI 80 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence 4899999999999999999987665321 222333444556678999999999999989899
Q ss_pred hhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH----hHHHhhhCCCcC-------
Q 029446 80 HYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP----MEVCEGLGLFDL------- 148 (193)
Q Consensus 80 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~----~~~~~~~~~~~~------- 148 (193)
.+++.+|++++|+|++++..... ..++..... .+.|+++|+||+|+..+... +++.+.+.....
T Consensus 81 ~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~----~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (189)
T cd00881 81 RGLSVSDGAILVVDANEGVQPQT-REHLRIARE----GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEG 155 (189)
T ss_pred HHHHhcCEEEEEEECCCCCcHHH-HHHHHHHHH----CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhhh
Confidence 99999999999999987654332 233333322 57899999999999874332 223333332111
Q ss_pred --CCCceEEEEeccccCCCHHHHHHHHHHHHH
Q 029446 149 --KNRKWHIQGTCALKGDGLYEGLDWLASTLK 178 (193)
Q Consensus 149 --~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~ 178 (193)
+....+++++||+++.|+++++++|.+.+.
T Consensus 156 ~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~ 187 (189)
T cd00881 156 TRNGLLVPIVPGSALTGIGVEELLEAIVEHLP 187 (189)
T ss_pred cccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence 235678999999999999999999998763
No 149
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.92 E-value=2.4e-24 Score=146.11 Aligned_cols=141 Identities=22% Similarity=0.265 Sum_probs=102.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcc-cc--ccccceeEEEEEEcCEEEEEEecCCCCC------CHHhHHhhh--cCCC
Q 029446 18 MRVVMLGLDAAGKTTILYKLHIGEVL-ST--VPTIGFNVEKVQYKNVIFTVWDVGGQEK------LRPLWRHYF--NNTD 86 (193)
Q Consensus 18 ~~v~v~G~~~~GKssli~~l~~~~~~-~~--~~t~~~~~~~~~~~~~~~~i~D~~g~~~------~~~~~~~~~--~~~d 86 (193)
++|+++|.||+|||||+|+|++.... .+ +.|+......+...+..+.++|+||.-. .......++ +..|
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D 80 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEKPD 80 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTSSS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCC
Confidence 47999999999999999999998854 22 4566666677888899999999999322 233334444 5899
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC----CHhHHHhhhCCCcCCCCceEEEEecccc
Q 029446 87 GLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM----TPMEVCEGLGLFDLKNRKWHIQGTCALK 162 (193)
Q Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (193)
+++.|+|+++.+. -.....++.. .++|+++|+||+|+.... +.+.+.+.++. |++++||++
T Consensus 81 ~ii~VvDa~~l~r---~l~l~~ql~e----~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg~--------pvi~~sa~~ 145 (156)
T PF02421_consen 81 LIIVVVDATNLER---NLYLTLQLLE----LGIPVVVVLNKMDEAERKGIEIDAEKLSERLGV--------PVIPVSART 145 (156)
T ss_dssp EEEEEEEGGGHHH---HHHHHHHHHH----TTSSEEEEEETHHHHHHTTEEE-HHHHHHHHTS---------EEEEBTTT
T ss_pred EEEEECCCCCHHH---HHHHHHHHHH----cCCCEEEEEeCHHHHHHcCCEECHHHHHHHhCC--------CEEEEEeCC
Confidence 9999999987543 3334444443 479999999999987642 34666776654 899999999
Q ss_pred CCCHHHHHHHH
Q 029446 163 GDGLYEGLDWL 173 (193)
Q Consensus 163 ~~gi~~~~~~l 173 (193)
++|++++.+.|
T Consensus 146 ~~g~~~L~~~I 156 (156)
T PF02421_consen 146 GEGIDELKDAI 156 (156)
T ss_dssp TBTHHHHHHHH
T ss_pred CcCHHHHHhhC
Confidence 99999998875
No 150
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.92 E-value=5.6e-24 Score=161.95 Aligned_cols=156 Identities=22% Similarity=0.182 Sum_probs=114.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcc--cc-ccccceeEEEEEEcC-EEEEEEecCCCCCC-------HHhHHhhhcCCC
Q 029446 18 MRVVMLGLDAAGKTTILYKLHIGEVL--ST-VPTIGFNVEKVQYKN-VIFTVWDVGGQEKL-------RPLWRHYFNNTD 86 (193)
Q Consensus 18 ~~v~v~G~~~~GKssli~~l~~~~~~--~~-~~t~~~~~~~~~~~~-~~~~i~D~~g~~~~-------~~~~~~~~~~~d 86 (193)
..|+++|.+|||||||++++++.... .+ .+|...+...+.+.. .++.+||+||..+. ...+...++.++
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhierad 237 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHIERTR 237 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHHHhhC
Confidence 58999999999999999999987543 23 356667777777765 89999999996421 222233346799
Q ss_pred EEEEEEECCCh---hhHHHHHHHHHHHHcCC-CCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEecccc
Q 029446 87 GLIYVVDSLDR---ERIGKAKQEFQAIIKDP-FMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALK 162 (193)
Q Consensus 87 ~~i~v~d~~~~---~s~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (193)
++++|+|+++. .+++....|..++.... ...++|+++|+||+|+.+....+++.+.+. +..+.+++++||++
T Consensus 238 ~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~----~~~~~~vi~iSAkt 313 (329)
T TIGR02729 238 VLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEELAELLKELK----KALGKPVFPISALT 313 (329)
T ss_pred EEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHHHHHHHHHHH----HHcCCcEEEEEccC
Confidence 99999999976 67777777766664432 235789999999999976543333333332 12235799999999
Q ss_pred CCCHHHHHHHHHHHH
Q 029446 163 GDGLYEGLDWLASTL 177 (193)
Q Consensus 163 ~~gi~~~~~~l~~~~ 177 (193)
++|+++++++|.+.+
T Consensus 314 g~GI~eL~~~I~~~l 328 (329)
T TIGR02729 314 GEGLDELLYALAELL 328 (329)
T ss_pred CcCHHHHHHHHHHHh
Confidence 999999999998765
No 151
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.92 E-value=1.4e-23 Score=144.30 Aligned_cols=143 Identities=19% Similarity=0.133 Sum_probs=106.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcccc----ccccceeEEEEEEcCEEEEEEecCCCCCCHHh--------HHhhhcCC
Q 029446 18 MRVVMLGLDAAGKTTILYKLHIGEVLST----VPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPL--------WRHYFNNT 85 (193)
Q Consensus 18 ~~v~v~G~~~~GKssli~~l~~~~~~~~----~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~~~~~ 85 (193)
++|+++|++|+|||||++++.+...... ..+.......+.....++.+|||||...+... ....+.++
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 81 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEEA 81 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhhC
Confidence 5899999999999999999998775321 12222333455556789999999997655321 23456789
Q ss_pred CEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCC
Q 029446 86 DGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDG 165 (193)
Q Consensus 86 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 165 (193)
|++++|+|++++.+......+.. ..+.|+++|+||+|+.+.... .......+++++||+++.|
T Consensus 82 ~~~v~v~d~~~~~~~~~~~~~~~-------~~~~~vi~v~nK~D~~~~~~~----------~~~~~~~~~~~~Sa~~~~~ 144 (157)
T cd04164 82 DLVLFVIDASRGLDEEDLEILEL-------PADKPIIVVLNKSDLLPDSEL----------LSLLAGKPIIAISAKTGEG 144 (157)
T ss_pred CEEEEEEECCCCCCHHHHHHHHh-------hcCCCEEEEEEchhcCCcccc----------ccccCCCceEEEECCCCCC
Confidence 99999999998776666543322 257899999999998875332 1234456899999999999
Q ss_pred HHHHHHHHHHHH
Q 029446 166 LYEGLDWLASTL 177 (193)
Q Consensus 166 i~~~~~~l~~~~ 177 (193)
+++++++|.+.+
T Consensus 145 v~~l~~~l~~~~ 156 (157)
T cd04164 145 LDELKEALLELA 156 (157)
T ss_pred HHHHHHHHHHhh
Confidence 999999998765
No 152
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.92 E-value=5.6e-24 Score=158.77 Aligned_cols=152 Identities=21% Similarity=0.197 Sum_probs=103.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCcccc---ccccceeE-EEEEEcCEEEEEEecCCCCCCH--------HhHHhhhcCCC
Q 029446 19 RVVMLGLDAAGKTTILYKLHIGEVLST---VPTIGFNV-EKVQYKNVIFTVWDVGGQEKLR--------PLWRHYFNNTD 86 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~~~~~~~---~~t~~~~~-~~~~~~~~~~~i~D~~g~~~~~--------~~~~~~~~~~d 86 (193)
+|+++|.+|||||||+|+|.+...... ..|+.... ........++.+|||||..... .....+++++|
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aD 81 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVD 81 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCC
Confidence 689999999999999999999876432 22332222 2233456789999999965421 12345678999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCCH
Q 029446 87 GLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGL 166 (193)
Q Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 166 (193)
++++|+|+++..+.+ .++...+.. .+.|+++|+||+|+.+.....+....+... .. ..+++++||++|.|+
T Consensus 82 vvl~VvD~~~~~~~~---~~i~~~l~~---~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~--~~-~~~v~~iSA~~g~gi 152 (270)
T TIGR00436 82 LILFVVDSDQWNGDG---EFVLTKLQN---LKRPVVLTRNKLDNKFKDKLLPLIDKYAIL--ED-FKDIVPISALTGDNT 152 (270)
T ss_pred EEEEEEECCCCCchH---HHHHHHHHh---cCCCEEEEEECeeCCCHHHHHHHHHHHHhh--cC-CCceEEEecCCCCCH
Confidence 999999999876654 223333332 468999999999997542222222211110 01 126999999999999
Q ss_pred HHHHHHHHHHHHh
Q 029446 167 YEGLDWLASTLKE 179 (193)
Q Consensus 167 ~~~~~~l~~~~~~ 179 (193)
++++++|.+.+.+
T Consensus 153 ~~L~~~l~~~l~~ 165 (270)
T TIGR00436 153 SFLAAFIEVHLPE 165 (270)
T ss_pred HHHHHHHHHhCCC
Confidence 9999999988754
No 153
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.92 E-value=1.5e-24 Score=166.13 Aligned_cols=164 Identities=23% Similarity=0.236 Sum_probs=121.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcccc----ccccceeEEEEEEcCEEEEEEecCCCCCC---------HHhHHhhhcC
Q 029446 18 MRVVMLGLDAAGKTTILYKLHIGEVLST----VPTIGFNVEKVQYKNVIFTVWDVGGQEKL---------RPLWRHYFNN 84 (193)
Q Consensus 18 ~~v~v~G~~~~GKssli~~l~~~~~~~~----~~t~~~~~~~~~~~~~~~~i~D~~g~~~~---------~~~~~~~~~~ 84 (193)
..|+++|.||+|||||+|+|++....-. +.|.+-.|....+.+..+.+.||+|-+.. +......+..
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~e 83 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEE 83 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHh
Confidence 6799999999999999999999886532 35556667888888899999999995532 3344567788
Q ss_pred CCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCC
Q 029446 85 TDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGD 164 (193)
Q Consensus 85 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (193)
+|+++||+|.... +......+.+++.. .++|+|+|+||+|-........-...+++. .++++||.+|.
T Consensus 84 ADvilfvVD~~~G--it~~D~~ia~~Lr~---~~kpviLvvNK~D~~~~e~~~~efyslG~g-------~~~~ISA~Hg~ 151 (444)
T COG1160 84 ADVILFVVDGREG--ITPADEEIAKILRR---SKKPVILVVNKIDNLKAEELAYEFYSLGFG-------EPVPISAEHGR 151 (444)
T ss_pred CCEEEEEEeCCCC--CCHHHHHHHHHHHh---cCCCEEEEEEcccCchhhhhHHHHHhcCCC-------CceEeehhhcc
Confidence 9999999999643 33444445555543 579999999999977442222222333332 58999999999
Q ss_pred CHHHHHHHHHHHHH-hhh----c---------cCCCCCCcCCC
Q 029446 165 GLYEGLDWLASTLK-EMR----A---------AGYSSVGTSSF 193 (193)
Q Consensus 165 gi~~~~~~l~~~~~-~~~----~---------~~~~~~~~~~~ 193 (193)
|+.++.+++.+.+. ... . -|.|++||||+
T Consensus 152 Gi~dLld~v~~~l~~~e~~~~~~~~~~ikiaiiGrPNvGKSsL 194 (444)
T COG1160 152 GIGDLLDAVLELLPPDEEEEEEEETDPIKIAIIGRPNVGKSSL 194 (444)
T ss_pred CHHHHHHHHHhhcCCcccccccccCCceEEEEEeCCCCCchHH
Confidence 99999999999972 111 1 17899999985
No 154
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.92 E-value=3.8e-24 Score=150.00 Aligned_cols=152 Identities=18% Similarity=0.132 Sum_probs=108.5
Q ss_pred EEcCCCCCHHHHHHHHhcCCc--ccc-ccccceeEEEEEEc-CEEEEEEecCCCCC----CHH---hHHhhhcCCCEEEE
Q 029446 22 MLGLDAAGKTTILYKLHIGEV--LST-VPTIGFNVEKVQYK-NVIFTVWDVGGQEK----LRP---LWRHYFNNTDGLIY 90 (193)
Q Consensus 22 v~G~~~~GKssli~~l~~~~~--~~~-~~t~~~~~~~~~~~-~~~~~i~D~~g~~~----~~~---~~~~~~~~~d~~i~ 90 (193)
++|++|||||||+|++.+... ..+ .+|.......+... ...+.+|||||... .+. .....++++|++++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~ 80 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAILH 80 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEEE
Confidence 589999999999999998864 222 34555555566666 88999999999632 111 22345678999999
Q ss_pred EEECCCh------hhHHHHHHHHHHHHcCCC------CCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEe
Q 029446 91 VVDSLDR------ERIGKAKQEFQAIIKDPF------MLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGT 158 (193)
Q Consensus 91 v~d~~~~------~s~~~~~~~~~~~~~~~~------~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (193)
|+|+++. .+++....+...+..... ..+.|+++|+||+|+.......+.. ..........+++++
T Consensus 81 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~---~~~~~~~~~~~~~~~ 157 (176)
T cd01881 81 VVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEEL---VRELALEEGAEVVPI 157 (176)
T ss_pred EEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHH---HHHHhcCCCCCEEEE
Confidence 9999987 467777666666654322 1478999999999997653333321 111122344579999
Q ss_pred ccccCCCHHHHHHHHHHH
Q 029446 159 CALKGDGLYEGLDWLAST 176 (193)
Q Consensus 159 Sa~~~~gi~~~~~~l~~~ 176 (193)
||+++.|++++++++.+.
T Consensus 158 Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 158 SAKTEEGLDELIRAIYEL 175 (176)
T ss_pred ehhhhcCHHHHHHHHHhh
Confidence 999999999999998764
No 155
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.92 E-value=5.1e-24 Score=168.87 Aligned_cols=163 Identities=22% Similarity=0.247 Sum_probs=116.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCcccc----ccccceeEEEEEEcCEEEEEEecCCCC--------CCHHhHHhhhcCCC
Q 029446 19 RVVMLGLDAAGKTTILYKLHIGEVLST----VPTIGFNVEKVQYKNVIFTVWDVGGQE--------KLRPLWRHYFNNTD 86 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~~~~~~~----~~t~~~~~~~~~~~~~~~~i~D~~g~~--------~~~~~~~~~~~~~d 86 (193)
+|+++|.+|+|||||+|+|.+...... +.|....+..+.+.+..+.+|||||.. .+......+++.+|
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad 80 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEAD 80 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCC
Confidence 589999999999999999998774322 233344556677788899999999963 34455667788999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCCH
Q 029446 87 GLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGL 166 (193)
Q Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 166 (193)
++++|+|+.+..+... ..+..+++. .++|+++|+||+|+.+..........++. .+++++||++|.|+
T Consensus 81 ~vl~vvD~~~~~~~~d--~~i~~~l~~---~~~piilVvNK~D~~~~~~~~~~~~~lg~-------~~~~~vSa~~g~gv 148 (429)
T TIGR03594 81 VILFVVDGREGLTPED--EEIAKWLRK---SGKPVILVANKIDGKKEDAVAAEFYSLGF-------GEPIPISAEHGRGI 148 (429)
T ss_pred EEEEEEeCCCCCCHHH--HHHHHHHHH---hCCCEEEEEECccCCcccccHHHHHhcCC-------CCeEEEeCCcCCCh
Confidence 9999999986533222 223333332 46899999999998765322111122221 15899999999999
Q ss_pred HHHHHHHHHHHHhhhc-------------cCCCCCCcCCC
Q 029446 167 YEGLDWLASTLKEMRA-------------AGYSSVGTSSF 193 (193)
Q Consensus 167 ~~~~~~l~~~~~~~~~-------------~~~~~~~~~~~ 193 (193)
+++++++.+.+.+... -|.+++|||+|
T Consensus 149 ~~ll~~i~~~l~~~~~~~~~~~~~~~v~ivG~~~~GKSsL 188 (429)
T TIGR03594 149 GDLLDAILELLPEEEEEEEEEDGPIKIAIIGRPNVGKSTL 188 (429)
T ss_pred HHHHHHHHHhcCcccccccccCCceEEEEECCCCCCHHHH
Confidence 9999999998854321 17788888864
No 156
>PTZ00099 rab6; Provisional
Probab=99.92 E-value=3.8e-24 Score=149.83 Aligned_cols=132 Identities=22% Similarity=0.306 Sum_probs=105.6
Q ss_pred ccccccceeEEE--EEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCC
Q 029446 44 STVPTIGFNVEK--VQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNS 119 (193)
Q Consensus 44 ~~~~t~~~~~~~--~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~ 119 (193)
.+.||++.++.. +.. ..+.+.+|||||++++...+..+++++|++|+|||++++.+|+.+..|+..+.... ..+.
T Consensus 8 ~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~-~~~~ 86 (176)
T PTZ00099 8 NYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER-GKDV 86 (176)
T ss_pred CCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCC
Confidence 467899877753 232 46899999999999999999999999999999999999999999999998887643 3578
Q ss_pred eEEEEEeCCCCCCCC--CHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHHHHHHHHHhhh
Q 029446 120 VILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEMR 181 (193)
Q Consensus 120 p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~ 181 (193)
|+|+|+||+|+.... ..++... + .+..+..+++|||++|+||+++|++|.+.+.+..
T Consensus 87 piilVgNK~DL~~~~~v~~~e~~~-~----~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~~~ 145 (176)
T PTZ00099 87 IIALVGNKTDLGDLRKVTYEEGMQ-K----AQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNLD 145 (176)
T ss_pred eEEEEEECcccccccCCCHHHHHH-H----HHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhcc
Confidence 999999999996532 2222211 1 2233457999999999999999999999997644
No 157
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.91 E-value=1.2e-23 Score=149.75 Aligned_cols=156 Identities=20% Similarity=0.087 Sum_probs=104.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC----Ccc------ccccccceeEEEEEEc--------------CEEEEEEecCCCCC
Q 029446 18 MRVVMLGLDAAGKTTILYKLHIG----EVL------STVPTIGFNVEKVQYK--------------NVIFTVWDVGGQEK 73 (193)
Q Consensus 18 ~~v~v~G~~~~GKssli~~l~~~----~~~------~~~~t~~~~~~~~~~~--------------~~~~~i~D~~g~~~ 73 (193)
++|+++|++++|||||+++|+.. .+. ....|.+.....+.+. ...+.+|||||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 47999999999999999999973 111 1134555554444433 67999999999876
Q ss_pred CHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH----hHHHhhhCCC--c
Q 029446 74 LRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP----MEVCEGLGLF--D 147 (193)
Q Consensus 74 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~----~~~~~~~~~~--~ 147 (193)
+........+.+|++++|+|+++....+....+. +... .+.|+++|+||+|+...... +++.+.+... .
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~---~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~ 155 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEI---LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEK 155 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHh
Confidence 5444445556789999999998754333322221 1121 25799999999998754322 2222221110 0
Q ss_pred CCCCceEEEEeccccCCCHHHHHHHHHHHHH
Q 029446 148 LKNRKWHIQGTCALKGDGLYEGLDWLASTLK 178 (193)
Q Consensus 148 ~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~ 178 (193)
....+++++++||++++|++++++++.+++.
T Consensus 156 ~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~ 186 (192)
T cd01889 156 TRFKNSPIIPVSAKPGGGEAELGKDLNNLIV 186 (192)
T ss_pred cCcCCCCEEEEeccCCCCHHHHHHHHHhccc
Confidence 1224568999999999999999999998775
No 158
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.91 E-value=2.2e-23 Score=143.42 Aligned_cols=145 Identities=19% Similarity=0.189 Sum_probs=102.2
Q ss_pred EEEcCCCCCHHHHHHHHhcCCcc---cc-ccccceeEEEEEEcCEEEEEEecCCCCCCHH--------hHHhhhcCCCEE
Q 029446 21 VMLGLDAAGKTTILYKLHIGEVL---ST-VPTIGFNVEKVQYKNVIFTVWDVGGQEKLRP--------LWRHYFNNTDGL 88 (193)
Q Consensus 21 ~v~G~~~~GKssli~~l~~~~~~---~~-~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~~~~~~~~d~~ 88 (193)
+++|.+|+|||||++++++.... .. ..|...........+..+.+|||||...+.. .+...++++|++
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~i 80 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEADVI 80 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEE
Confidence 47899999999999999987532 11 2233344455666778999999999888654 334567889999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCCHHH
Q 029446 89 IYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYE 168 (193)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 168 (193)
++|+|+.+..+.... ++...++. .+.|+++|+||+|+.+.....+....++. .+++++|++++.|+++
T Consensus 81 i~v~d~~~~~~~~~~--~~~~~~~~---~~~piiiv~nK~D~~~~~~~~~~~~~~~~-------~~~~~~Sa~~~~gv~~ 148 (157)
T cd01894 81 LFVVDGREGLTPADE--EIAKYLRK---SKKPVILVVNKVDNIKEEDEAAEFYSLGF-------GEPIPISAEHGRGIGD 148 (157)
T ss_pred EEEEeccccCCccHH--HHHHHHHh---cCCCEEEEEECcccCChHHHHHHHHhcCC-------CCeEEEecccCCCHHH
Confidence 999999765443332 23333332 35899999999999875332112111111 1589999999999999
Q ss_pred HHHHHHHHH
Q 029446 169 GLDWLASTL 177 (193)
Q Consensus 169 ~~~~l~~~~ 177 (193)
+++++.+++
T Consensus 149 l~~~l~~~~ 157 (157)
T cd01894 149 LLDAILELL 157 (157)
T ss_pred HHHHHHhhC
Confidence 999998753
No 159
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.91 E-value=1.2e-23 Score=174.96 Aligned_cols=169 Identities=20% Similarity=0.216 Sum_probs=116.3
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhcCCccccccccceeE----EEEEEcCEEEEEEecCCCCC--------CHHhHHh
Q 029446 13 FGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNV----EKVQYKNVIFTVWDVGGQEK--------LRPLWRH 80 (193)
Q Consensus 13 ~~~~~~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~----~~~~~~~~~~~i~D~~g~~~--------~~~~~~~ 80 (193)
......+|+++|.+|+|||||+|+|++.......++.|++. ....+.+..+.+|||||... +......
T Consensus 271 ~~~~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~ 350 (712)
T PRK09518 271 GPKAVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQI 350 (712)
T ss_pred ccccCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHH
Confidence 44455789999999999999999999876543333344433 23445678999999999663 2344456
Q ss_pred hhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEecc
Q 029446 81 YFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCA 160 (193)
Q Consensus 81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (193)
+++.+|++++|+|+++.. ......+...+.. .+.|+|+|+||+|+..... ...+...+ ..+ ..+++||
T Consensus 351 ~~~~aD~iL~VvDa~~~~--~~~d~~i~~~Lr~---~~~pvIlV~NK~D~~~~~~--~~~~~~~l----g~~-~~~~iSA 418 (712)
T PRK09518 351 AVSLADAVVFVVDGQVGL--TSTDERIVRMLRR---AGKPVVLAVNKIDDQASEY--DAAEFWKL----GLG-EPYPISA 418 (712)
T ss_pred HHHhCCEEEEEEECCCCC--CHHHHHHHHHHHh---cCCCEEEEEECcccccchh--hHHHHHHc----CCC-CeEEEEC
Confidence 778999999999997632 2333333333332 5789999999999865321 11111111 111 3578999
Q ss_pred ccCCCHHHHHHHHHHHHHhhh--c-------------cCCCCCCcCCC
Q 029446 161 LKGDGLYEGLDWLASTLKEMR--A-------------AGYSSVGTSSF 193 (193)
Q Consensus 161 ~~~~gi~~~~~~l~~~~~~~~--~-------------~~~~~~~~~~~ 193 (193)
++|.|+++++++|.+.+.+.. . -|.+++|||||
T Consensus 419 ~~g~GI~eLl~~i~~~l~~~~~~~~a~~~~~~~kI~ivG~~nvGKSSL 466 (712)
T PRK09518 419 MHGRGVGDLLDEALDSLKVAEKTSGFLTPSGLRRVALVGRPNVGKSSL 466 (712)
T ss_pred CCCCCchHHHHHHHHhcccccccccccCCCCCcEEEEECCCCCCHHHH
Confidence 999999999999999885421 1 27888888874
No 160
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.91 E-value=8.1e-24 Score=167.95 Aligned_cols=163 Identities=22% Similarity=0.230 Sum_probs=113.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcccc----ccccceeEEEEEEcCEEEEEEecCCCCC--------CHHhHHhhhcCC
Q 029446 18 MRVVMLGLDAAGKTTILYKLHIGEVLST----VPTIGFNVEKVQYKNVIFTVWDVGGQEK--------LRPLWRHYFNNT 85 (193)
Q Consensus 18 ~~v~v~G~~~~GKssli~~l~~~~~~~~----~~t~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~~~~~ 85 (193)
++|+++|.+|+|||||+|+|.+...... ..|....+..+.+.+..+.+|||||... +......++.++
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~a 81 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDDGFEKQIREQAELAIEEA 81 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHhC
Confidence 5899999999999999999998774321 2233445556677789999999999887 333455677899
Q ss_pred CEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCce-EEEEeccccCC
Q 029446 86 DGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKW-HIQGTCALKGD 164 (193)
Q Consensus 86 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 164 (193)
|++++|+|+.++.+... .++..++.. .+.|+|+|+||+|+.+.. ....+... .++ .++++||++|.
T Consensus 82 d~il~vvd~~~~~~~~~--~~~~~~l~~---~~~piilv~NK~D~~~~~--~~~~~~~~------lg~~~~~~iSa~~g~ 148 (435)
T PRK00093 82 DVILFVVDGRAGLTPAD--EEIAKILRK---SNKPVILVVNKVDGPDEE--ADAYEFYS------LGLGEPYPISAEHGR 148 (435)
T ss_pred CEEEEEEECCCCCCHHH--HHHHHHHHH---cCCcEEEEEECccCccch--hhHHHHHh------cCCCCCEEEEeeCCC
Confidence 99999999987533222 222233332 378999999999975521 11211111 122 37899999999
Q ss_pred CHHHHHHHHHHHHHhhh------------ccCCCCCCcCCC
Q 029446 165 GLYEGLDWLASTLKEMR------------AAGYSSVGTSSF 193 (193)
Q Consensus 165 gi~~~~~~l~~~~~~~~------------~~~~~~~~~~~~ 193 (193)
|++++++.+.+...... --|.+++|||+|
T Consensus 149 gv~~l~~~I~~~~~~~~~~~~~~~~~~v~ivG~~n~GKStl 189 (435)
T PRK00093 149 GIGDLLDAILEELPEEEEEDEEDEPIKIAIIGRPNVGKSSL 189 (435)
T ss_pred CHHHHHHHHHhhCCccccccccccceEEEEECCCCCCHHHH
Confidence 99999999988332211 128899999874
No 161
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.91 E-value=2e-23 Score=148.79 Aligned_cols=145 Identities=19% Similarity=0.215 Sum_probs=100.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhc--CCcccc-------------cccccee----EEEEEEcCEEEEEEecCCCCCCHHhHH
Q 029446 19 RVVMLGLDAAGKTTILYKLHI--GEVLST-------------VPTIGFN----VEKVQYKNVIFTVWDVGGQEKLRPLWR 79 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~--~~~~~~-------------~~t~~~~----~~~~~~~~~~~~i~D~~g~~~~~~~~~ 79 (193)
+|+++|++++|||||+++|+. +.+... ..+.+.+ ...+.++...+.+|||||+++|...+.
T Consensus 4 ~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~ 83 (194)
T cd01891 4 NIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEVE 83 (194)
T ss_pred EEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHHH
Confidence 799999999999999999997 444321 1122322 334566789999999999999999999
Q ss_pred hhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH---hHHHhhhC-C-CcCCCCceE
Q 029446 80 HYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP---MEVCEGLG-L-FDLKNRKWH 154 (193)
Q Consensus 80 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~---~~~~~~~~-~-~~~~~~~~~ 154 (193)
.+++++|++++|+|+++.. +.....++..... .+.|+++|+||+|+...... +++.+.+. . ......+++
T Consensus 84 ~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (194)
T cd01891 84 RVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE----LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFP 158 (194)
T ss_pred HHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH----cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCccC
Confidence 9999999999999998642 2222333333322 46899999999999754221 22222221 0 011345678
Q ss_pred EEEeccccCCCHHH
Q 029446 155 IQGTCALKGDGLYE 168 (193)
Q Consensus 155 ~~~~Sa~~~~gi~~ 168 (193)
++++||++|.|+.+
T Consensus 159 iv~~Sa~~g~~~~~ 172 (194)
T cd01891 159 VLYASAKNGWASLN 172 (194)
T ss_pred EEEeehhccccccc
Confidence 99999999987643
No 162
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.91 E-value=1.7e-23 Score=144.27 Aligned_cols=145 Identities=21% Similarity=0.168 Sum_probs=102.9
Q ss_pred EEcCCCCCHHHHHHHHhcCCcc-cc--ccccceeEEEEEEcCEEEEEEecCCCCCCHH------hHHhhhc--CCCEEEE
Q 029446 22 MLGLDAAGKTTILYKLHIGEVL-ST--VPTIGFNVEKVQYKNVIFTVWDVGGQEKLRP------LWRHYFN--NTDGLIY 90 (193)
Q Consensus 22 v~G~~~~GKssli~~l~~~~~~-~~--~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~------~~~~~~~--~~d~~i~ 90 (193)
++|.+|+|||||++++.+.... .. ..|.......+.+.+..+.+|||||+..+.. .+..++. ++|++++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~ 80 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVN 80 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEEE
Confidence 5899999999999999987633 22 2344455556667778999999999876653 3455554 8999999
Q ss_pred EEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHH
Q 029446 91 VVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGL 170 (193)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~ 170 (193)
|+|++++.... .++..+.. .++|+++|+||+|+.+........+.+ .+..+.+++++||+++.|+++++
T Consensus 81 v~d~~~~~~~~---~~~~~~~~----~~~~~iiv~NK~Dl~~~~~~~~~~~~~----~~~~~~~~~~iSa~~~~~~~~l~ 149 (158)
T cd01879 81 VVDATNLERNL---YLTLQLLE----LGLPVVVALNMIDEAEKRGIKIDLDKL----SELLGVPVVPTSARKGEGIDELK 149 (158)
T ss_pred EeeCCcchhHH---HHHHHHHH----cCCCEEEEEehhhhcccccchhhHHHH----HHhhCCCeEEEEccCCCCHHHHH
Confidence 99998765432 33333332 368999999999997653222111111 12234579999999999999999
Q ss_pred HHHHHHH
Q 029446 171 DWLASTL 177 (193)
Q Consensus 171 ~~l~~~~ 177 (193)
+++.+.+
T Consensus 150 ~~l~~~~ 156 (158)
T cd01879 150 DAIAELA 156 (158)
T ss_pred HHHHHHh
Confidence 9998764
No 163
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.91 E-value=1.1e-23 Score=143.44 Aligned_cols=148 Identities=30% Similarity=0.382 Sum_probs=114.4
Q ss_pred EEcCCCCCHHHHHHHHhcCCc-c-ccccccceeEEEEEEc----CEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECC
Q 029446 22 MLGLDAAGKTTILYKLHIGEV-L-STVPTIGFNVEKVQYK----NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL 95 (193)
Q Consensus 22 v~G~~~~GKssli~~l~~~~~-~-~~~~t~~~~~~~~~~~----~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~ 95 (193)
++|++|+|||||++++.+... . ...+|. ......... ...+.+||+||+..+.......++.+|++++|+|++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 79 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT 79 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence 589999999999999998877 3 333444 555544443 788999999999988888888889999999999999
Q ss_pred ChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHH--hhhCCCcCCCCceEEEEeccccCCCHHHHHHHH
Q 029446 96 DRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVC--EGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 173 (193)
Q Consensus 96 ~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l 173 (193)
++.++.....++..........+.|+++++||+|+.......... ... ......+++++|++++.|+++++++|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~----~~~~~~~~~~~s~~~~~~i~~~~~~l 155 (157)
T cd00882 80 DRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQL----AKELGVPYFETSAKTGENVEELFEEL 155 (157)
T ss_pred CHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHH----HhhcCCcEEEEecCCCCChHHHHHHH
Confidence 999888888774444444445789999999999988764433321 111 12345689999999999999999988
Q ss_pred H
Q 029446 174 A 174 (193)
Q Consensus 174 ~ 174 (193)
.
T Consensus 156 ~ 156 (157)
T cd00882 156 A 156 (157)
T ss_pred h
Confidence 5
No 164
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.91 E-value=2.2e-23 Score=151.29 Aligned_cols=166 Identities=27% Similarity=0.312 Sum_probs=122.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccceeEEEEEE--c--CEEEEEEecCCCCCCHHhHHhhhcCCCEEEE
Q 029446 16 SEMRVVMLGLDAAGKTTILYKLHIGEVLS-TVPTIGFNVEKVQY--K--NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIY 90 (193)
Q Consensus 16 ~~~~v~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~~~~~--~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 90 (193)
..+||+++|++|+|||||+++|.++.+.. +.+|.+..+..... . .+.+.+|||+|+++++..+..++.+++++++
T Consensus 4 ~~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~ 83 (219)
T COG1100 4 KEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILI 83 (219)
T ss_pred ceEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEE
Confidence 34999999999999999999999999884 55666655443222 2 5779999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHH-Hhh----------hCCCcC-CCCceEEEEe
Q 029446 91 VVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEV-CEG----------LGLFDL-KNRKWHIQGT 158 (193)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~-~~~----------~~~~~~-~~~~~~~~~~ 158 (193)
|+|.+...++.+....|...+......+.|+++|+||+|+......... ... ...... ......++++
T Consensus 84 ~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (219)
T COG1100 84 VYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLET 163 (219)
T ss_pred EEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEe
Confidence 9999985555555554444444333257999999999999886432111 110 000000 1123348999
Q ss_pred ccc--cCCCHHHHHHHHHHHHHhhh
Q 029446 159 CAL--KGDGLYEGLDWLASTLKEMR 181 (193)
Q Consensus 159 Sa~--~~~gi~~~~~~l~~~~~~~~ 181 (193)
|++ ++.++++++..+...+.+..
T Consensus 164 s~~~~~~~~v~~~~~~~~~~~~~~~ 188 (219)
T COG1100 164 SAKSLTGPNVNELFKELLRKLLEEI 188 (219)
T ss_pred ecccCCCcCHHHHHHHHHHHHHHhh
Confidence 999 99999999999999886544
No 165
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.91 E-value=7e-23 Score=161.40 Aligned_cols=151 Identities=15% Similarity=0.173 Sum_probs=111.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCcc--cccc--ccceeEEEEEEcCEEEEEEecCCCCCCHHh--------HHhhh
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHIGEVL--STVP--TIGFNVEKVQYKNVIFTVWDVGGQEKLRPL--------WRHYF 82 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~~ 82 (193)
...++|+++|.+|+|||||+|+|++.... ...+ |.......+.+++..+.+|||||..++... ...++
T Consensus 201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~ 280 (442)
T TIGR00450 201 DDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHADFVERLGIEKSFKAI 280 (442)
T ss_pred hcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccchhHHHHHHHHHHHHHH
Confidence 45689999999999999999999987542 2222 233334456678889999999998655432 24567
Q ss_pred cCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEecccc
Q 029446 83 NNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALK 162 (193)
Q Consensus 83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (193)
+++|++++|+|++++.+++.. |+..... .+.|+|+|+||+|+... +..++. +..+.+++.+||++
T Consensus 281 ~~aD~il~V~D~s~~~s~~~~--~l~~~~~----~~~piIlV~NK~Dl~~~-~~~~~~--------~~~~~~~~~vSak~ 345 (442)
T TIGR00450 281 KQADLVIYVLDASQPLTKDDF--LIIDLNK----SKKPFILVLNKIDLKIN-SLEFFV--------SSKVLNSSNLSAKQ 345 (442)
T ss_pred hhCCEEEEEEECCCCCChhHH--HHHHHhh----CCCCEEEEEECccCCCc-chhhhh--------hhcCCceEEEEEec
Confidence 899999999999988877664 5554422 46899999999998654 222222 22334689999997
Q ss_pred CCCHHHHHHHHHHHHHhhh
Q 029446 163 GDGLYEGLDWLASTLKEMR 181 (193)
Q Consensus 163 ~~gi~~~~~~l~~~~~~~~ 181 (193)
.|++++++.+.+.+.+..
T Consensus 346 -~gI~~~~~~L~~~i~~~~ 363 (442)
T TIGR00450 346 -LKIKALVDLLTQKINAFY 363 (442)
T ss_pred -CCHHHHHHHHHHHHHHHh
Confidence 699999999999887654
No 166
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.91 E-value=4.9e-23 Score=163.28 Aligned_cols=160 Identities=16% Similarity=0.112 Sum_probs=111.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc---c-ccccceeEEEEEEcCEEEEEEecCCCCCCHHh-----------HHh
Q 029446 16 SEMRVVMLGLDAAGKTTILYKLHIGEVLS---T-VPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPL-----------WRH 80 (193)
Q Consensus 16 ~~~~v~v~G~~~~GKssli~~l~~~~~~~---~-~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-----------~~~ 80 (193)
..++|+++|.+|+|||||+|++++..... . ..|.......+..++..+.+|||||..+.... ...
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~ 250 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLK 250 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHHHH
Confidence 45899999999999999999999876432 1 22333333445566779999999996543321 134
Q ss_pred hhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCC-CCCCHhHHHhhhCCCcCCCCceEEEEec
Q 029446 81 YFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMK-GAMTPMEVCEGLGLFDLKNRKWHIQGTC 159 (193)
Q Consensus 81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (193)
+++.+|++++|+|++++.+.+.. .++..+.. .+.|+|+|+||+|+. +....+++.+.+.........++++++|
T Consensus 251 ~~~~ad~~ilV~D~~~~~~~~~~-~~~~~~~~----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vi~~S 325 (429)
T TIGR03594 251 AIERADVVLLVLDATEGITEQDL-RIAGLILE----AGKALVIVVNKWDLVKDEKTREEFKKELRRKLPFLDFAPIVFIS 325 (429)
T ss_pred HHHhCCEEEEEEECCCCccHHHH-HHHHHHHH----cCCcEEEEEECcccCCCHHHHHHHHHHHHHhcccCCCCceEEEe
Confidence 67899999999999987665554 23333322 468999999999998 2222233333332211122346899999
Q ss_pred cccCCCHHHHHHHHHHHHHhh
Q 029446 160 ALKGDGLYEGLDWLASTLKEM 180 (193)
Q Consensus 160 a~~~~gi~~~~~~l~~~~~~~ 180 (193)
|++|.|++++++++.+.....
T Consensus 326 A~~g~~v~~l~~~i~~~~~~~ 346 (429)
T TIGR03594 326 ALTGQGVDKLLDAIDEVYENA 346 (429)
T ss_pred CCCCCCHHHHHHHHHHHHHHh
Confidence 999999999999998876543
No 167
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.91 E-value=3.2e-23 Score=163.65 Aligned_cols=160 Identities=25% Similarity=0.229 Sum_probs=114.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCcc--cc-ccccceeEEEEEEcCEEEEEEecCCCCC----CHHh---HHhhhcCCC
Q 029446 17 EMRVVMLGLDAAGKTTILYKLHIGEVL--ST-VPTIGFNVEKVQYKNVIFTVWDVGGQEK----LRPL---WRHYFNNTD 86 (193)
Q Consensus 17 ~~~v~v~G~~~~GKssli~~l~~~~~~--~~-~~t~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~---~~~~~~~~d 86 (193)
...|+++|.||||||||+|+|++.... .+ .+|...+...+.....++++||+||... ...+ ....+++|+
T Consensus 159 ~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhierad 238 (500)
T PRK12296 159 VADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIERCA 238 (500)
T ss_pred cceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHHHhcC
Confidence 358999999999999999999987543 33 4677788888888889999999999432 1111 223457899
Q ss_pred EEEEEEECCCh----hhHHHHHHHHHHHHcCC----------CCCCCeEEEEEeCCCCCCCCCHhH-HHhhhCCCcCCCC
Q 029446 87 GLIYVVDSLDR----ERIGKAKQEFQAIIKDP----------FMLNSVILVFANKQDMKGAMTPME-VCEGLGLFDLKNR 151 (193)
Q Consensus 87 ~~i~v~d~~~~----~s~~~~~~~~~~~~~~~----------~~~~~p~ivv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~ 151 (193)
++++|+|+++. +.++.+..+..++.... ....+|.|+|+||+|+.+.....+ +...+ ...
T Consensus 239 vLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e~l~~~l-----~~~ 313 (500)
T PRK12296 239 VLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAEFVRPEL-----EAR 313 (500)
T ss_pred EEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHHHHHHHH-----HHc
Confidence 99999999752 34444444443433221 235789999999999975432222 22222 223
Q ss_pred ceEEEEeccccCCCHHHHHHHHHHHHHhhh
Q 029446 152 KWHIQGTCALKGDGLYEGLDWLASTLKEMR 181 (193)
Q Consensus 152 ~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~ 181 (193)
+++++++||++++|+++++++|.+.+...+
T Consensus 314 g~~Vf~ISA~tgeGLdEL~~~L~ell~~~r 343 (500)
T PRK12296 314 GWPVFEVSAASREGLRELSFALAELVEEAR 343 (500)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhh
Confidence 568999999999999999999999987654
No 168
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.91 E-value=5.3e-23 Score=162.85 Aligned_cols=146 Identities=17% Similarity=0.211 Sum_probs=110.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCcc--cc--ccccceeEEEEEEcCEEEEEEecCCCCCCHHh--------HHhhhc
Q 029446 16 SEMRVVMLGLDAAGKTTILYKLHIGEVL--ST--VPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPL--------WRHYFN 83 (193)
Q Consensus 16 ~~~~v~v~G~~~~GKssli~~l~~~~~~--~~--~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~~~ 83 (193)
..++|+++|.+|+|||||+|+|++.... .. ..|.+.....+..++..+.+|||||..++... ...+++
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~~ 293 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERSREAIE 293 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCccHHHHHHHHHHHHHHH
Confidence 4589999999999999999999987642 22 23444445566778889999999997654321 234678
Q ss_pred CCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccC
Q 029446 84 NTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKG 163 (193)
Q Consensus 84 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (193)
++|++++|+|++++.+++.... +.. ..+.|+++|+||+|+.+..... .....+++++||++|
T Consensus 294 ~aD~il~VvD~s~~~s~~~~~~-l~~------~~~~piiiV~NK~DL~~~~~~~-----------~~~~~~~i~iSAktg 355 (449)
T PRK05291 294 EADLVLLVLDASEPLTEEDDEI-LEE------LKDKPVIVVLNKADLTGEIDLE-----------EENGKPVIRISAKTG 355 (449)
T ss_pred hCCEEEEEecCCCCCChhHHHH-HHh------cCCCCcEEEEEhhhccccchhh-----------hccCCceEEEEeeCC
Confidence 8999999999998877665433 222 2578999999999997643221 122346899999999
Q ss_pred CCHHHHHHHHHHHHHh
Q 029446 164 DGLYEGLDWLASTLKE 179 (193)
Q Consensus 164 ~gi~~~~~~l~~~~~~ 179 (193)
+|+++++++|.+.+..
T Consensus 356 ~GI~~L~~~L~~~l~~ 371 (449)
T PRK05291 356 EGIDELREAIKELAFG 371 (449)
T ss_pred CCHHHHHHHHHHHHhh
Confidence 9999999999998864
No 169
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.91 E-value=7.6e-23 Score=146.56 Aligned_cols=157 Identities=27% Similarity=0.357 Sum_probs=115.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEEEEE----cCEEEEEEecCCCCCCHHhHHhhhcCC-CEEEEEEE
Q 029446 19 RVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQY----KNVIFTVWDVGGQEKLRPLWRHYFNNT-DGLIYVVD 93 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~----~~~~~~i~D~~g~~~~~~~~~~~~~~~-d~~i~v~d 93 (193)
+|+++|+++||||||+++|..+.+..+.++...+...+.. ....+.+||+||+.+++..+..+++++ +++|+|+|
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD 81 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSIEPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVD 81 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcEeecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEE
Confidence 6899999999999999999998876554444444444333 367899999999999999999999998 99999999
Q ss_pred CCCh-hhHHHHHHHHHHHHcCC--CCCCCeEEEEEeCCCCCCCCCHhHHHhhhC-------------CC-----------
Q 029446 94 SLDR-ERIGKAKQEFQAIIKDP--FMLNSVILVFANKQDMKGAMTPMEVCEGLG-------------LF----------- 146 (193)
Q Consensus 94 ~~~~-~s~~~~~~~~~~~~~~~--~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~-------------~~----------- 146 (193)
+.+. .++.....++..++... ...+.|+++++||+|+........+.+.+. +.
T Consensus 82 ~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~~~~~i~~~le~ei~~~~~~r~~~l~~~~~~~~~~~~ 161 (203)
T cd04105 82 SATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAKPAKKIKEQLEKELNTLRESRSKSLSSLDGDEGSKES 161 (203)
T ss_pred CccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccCCHHHHHHHHHHHHHHHHHHHhccccccccccccccc
Confidence 9987 67777777776665421 225799999999999876433222111110 00
Q ss_pred ---------cC--CCCceEEEEeccccCC-CHHHHHHHHHH
Q 029446 147 ---------DL--KNRKWHIQGTCALKGD-GLYEGLDWLAS 175 (193)
Q Consensus 147 ---------~~--~~~~~~~~~~Sa~~~~-gi~~~~~~l~~ 175 (193)
.+ -...+.+.++|++.+. |++.+.+||.+
T Consensus 162 ~~~~~~~~f~f~~~~~~v~~~~~s~~~~~~~~~~~~~w~~~ 202 (203)
T cd04105 162 LGDKGGKSFEFDQLEGKVEFLEGSVKVDGGGIDGWEEWIDE 202 (203)
T ss_pred cccccCcceeeccCceeEEEEEeEEecCCCChHhHHHHHhh
Confidence 00 1235679999999876 69999888864
No 170
>PRK11058 GTPase HflX; Provisional
Probab=99.91 E-value=1.5e-22 Score=158.69 Aligned_cols=154 Identities=18% Similarity=0.165 Sum_probs=107.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcc---ccccccceeEEEEEEcCE-EEEEEecCCCCCC--HHhH------HhhhcCC
Q 029446 18 MRVVMLGLDAAGKTTILYKLHIGEVL---STVPTIGFNVEKVQYKNV-IFTVWDVGGQEKL--RPLW------RHYFNNT 85 (193)
Q Consensus 18 ~~v~v~G~~~~GKssli~~l~~~~~~---~~~~t~~~~~~~~~~~~~-~~~i~D~~g~~~~--~~~~------~~~~~~~ 85 (193)
++|+++|.+|||||||+|+|++.... ....|.+.....+...+. .+.+|||+|..+. ...+ ...++++
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~A 277 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQETRQA 277 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCCCeEEEEecCcccccCCHHHHHHHHHHHHHhhcC
Confidence 68999999999999999999987653 224566666666666543 8899999997432 1112 2335789
Q ss_pred CEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceE-EEEeccccCC
Q 029446 86 DGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWH-IQGTCALKGD 164 (193)
Q Consensus 86 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~ 164 (193)
|++++|+|++++.+++.+..+. .++......+.|+|+|+||+|+.+.... ..... ..+.+ ++.+||++|+
T Consensus 278 DlIL~VvDaS~~~~~e~l~~v~-~iL~el~~~~~pvIiV~NKiDL~~~~~~-~~~~~-------~~~~~~~v~ISAktG~ 348 (426)
T PRK11058 278 TLLLHVVDAADVRVQENIEAVN-TVLEEIDAHEIPTLLVMNKIDMLDDFEP-RIDRD-------EENKPIRVWLSAQTGA 348 (426)
T ss_pred CEEEEEEeCCCccHHHHHHHHH-HHHHHhccCCCCEEEEEEcccCCCchhH-HHHHH-------hcCCCceEEEeCCCCC
Confidence 9999999999987766654322 2222222247899999999998753211 11111 01123 5889999999
Q ss_pred CHHHHHHHHHHHHHhh
Q 029446 165 GLYEGLDWLASTLKEM 180 (193)
Q Consensus 165 gi~~~~~~l~~~~~~~ 180 (193)
|+++++++|.+.+...
T Consensus 349 GIdeL~e~I~~~l~~~ 364 (426)
T PRK11058 349 GIPLLFQALTERLSGE 364 (426)
T ss_pred CHHHHHHHHHHHhhhc
Confidence 9999999999988543
No 171
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.90 E-value=2.3e-22 Score=156.91 Aligned_cols=155 Identities=25% Similarity=0.207 Sum_probs=112.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCcc--cc-ccccceeEEEEEEc-CEEEEEEecCCCCC----CHHhHH---hhhcCCCE
Q 029446 19 RVVMLGLDAAGKTTILYKLHIGEVL--ST-VPTIGFNVEKVQYK-NVIFTVWDVGGQEK----LRPLWR---HYFNNTDG 87 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~~~~~--~~-~~t~~~~~~~~~~~-~~~~~i~D~~g~~~----~~~~~~---~~~~~~d~ 87 (193)
.|+++|.||||||||++++++.... .+ .+|...+...+.+. ..++.+||+||..+ ...+.. ..++.+++
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhier~~l 239 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIERTRV 239 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHHhhCCE
Confidence 8999999999999999999987643 22 45667777777776 78999999999532 222222 33456999
Q ss_pred EEEEEECCCh---hhHHHHHHHHHHHHcCC-CCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCcCCCCceEEEEecccc
Q 029446 88 LIYVVDSLDR---ERIGKAKQEFQAIIKDP-FMLNSVILVFANKQDMKGAMT-PMEVCEGLGLFDLKNRKWHIQGTCALK 162 (193)
Q Consensus 88 ~i~v~d~~~~---~s~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (193)
+++|+|+++. .+++....|..++.... ...++|.++|+||+|+..... .+++.+.+. .+++++||++
T Consensus 240 lI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~~e~l~~l~~~l~--------~~i~~iSA~t 311 (424)
T PRK12297 240 IVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEAEENLEEFKEKLG--------PKVFPISALT 311 (424)
T ss_pred EEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCCHHHHHHHHHHhC--------CcEEEEeCCC
Confidence 9999999754 56677666666654432 235789999999999853311 122222222 4799999999
Q ss_pred CCCHHHHHHHHHHHHHhhh
Q 029446 163 GDGLYEGLDWLASTLKEMR 181 (193)
Q Consensus 163 ~~gi~~~~~~l~~~~~~~~ 181 (193)
++|+++++++|.+.+.+..
T Consensus 312 geGI~eL~~~L~~~l~~~~ 330 (424)
T PRK12297 312 GQGLDELLYAVAELLEETP 330 (424)
T ss_pred CCCHHHHHHHHHHHHHhCc
Confidence 9999999999999886543
No 172
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.90 E-value=4e-22 Score=139.14 Aligned_cols=155 Identities=17% Similarity=0.122 Sum_probs=104.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc---c-ccccceeEEEEEEcCEEEEEEecCCCCCCH-----------HhHHhh
Q 029446 17 EMRVVMLGLDAAGKTTILYKLHIGEVLS---T-VPTIGFNVEKVQYKNVIFTVWDVGGQEKLR-----------PLWRHY 81 (193)
Q Consensus 17 ~~~v~v~G~~~~GKssli~~l~~~~~~~---~-~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~-----------~~~~~~ 81 (193)
.++|+++|.+|+|||||+|++.+..... . ..+.......+...+..+.+||+||..... ......
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~ 81 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKA 81 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHHH
Confidence 5789999999999999999999876432 1 122222233455567789999999964431 112335
Q ss_pred hcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCcCCCCceEEEEec
Q 029446 82 FNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA--MTPMEVCEGLGLFDLKNRKWHIQGTC 159 (193)
Q Consensus 82 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (193)
+.++|++++|+|++++.+.... .++..... .+.|+++++||+|+.+. ...+++.+.+..........+++++|
T Consensus 82 ~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~~----~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 156 (174)
T cd01895 82 IERADVVLLVIDATEGITEQDL-RIAGLILE----EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFIS 156 (174)
T ss_pred HhhcCeEEEEEeCCCCcchhHH-HHHHHHHh----cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEEe
Confidence 6789999999999988765443 23333222 46899999999998765 23333333222111111235799999
Q ss_pred cccCCCHHHHHHHHHHH
Q 029446 160 ALKGDGLYEGLDWLAST 176 (193)
Q Consensus 160 a~~~~gi~~~~~~l~~~ 176 (193)
|++++|++++++.+.+.
T Consensus 157 a~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 157 ALTGQGVDKLFDAIDEV 173 (174)
T ss_pred ccCCCCHHHHHHHHHHh
Confidence 99999999999988753
No 173
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.90 E-value=8e-23 Score=145.87 Aligned_cols=163 Identities=18% Similarity=0.145 Sum_probs=106.5
Q ss_pred hhcCCCccEEEEEcCCCCCHHHHHHHHhcCCc-cccccccceeEEEEEE-cCEEEEEEecCCCC----------CCHHhH
Q 029446 11 VFFGNSEMRVVMLGLDAAGKTTILYKLHIGEV-LSTVPTIGFNVEKVQY-KNVIFTVWDVGGQE----------KLRPLW 78 (193)
Q Consensus 11 ~~~~~~~~~v~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~~~~~~~-~~~~~~i~D~~g~~----------~~~~~~ 78 (193)
....+..++|+++|++|+|||||++++++..+ ..+.++.+.+...... ...++.+|||||.. .+....
T Consensus 18 ~~~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~~~~ 97 (196)
T PRK00454 18 QLPPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEVNDKLRLVDLPGYGYAKVSKEEKEKWQKLI 97 (196)
T ss_pred hCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEecCCeEEEeCCCCCCCcCCCchHHHHHHHHH
Confidence 34556779999999999999999999998763 3444555443321111 24789999999943 233344
Q ss_pred HhhhcC---CCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEE
Q 029446 79 RHYFNN---TDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHI 155 (193)
Q Consensus 79 ~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (193)
..++.. ++++++++|.+++.+... .++...+.. .+.|+++++||+|+.+....++....... .+.....++
T Consensus 98 ~~~~~~~~~~~~~~~v~d~~~~~~~~~--~~i~~~l~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~-~l~~~~~~~ 171 (196)
T PRK00454 98 EEYLRTRENLKGVVLLIDSRHPLKELD--LQMIEWLKE---YGIPVLIVLTKADKLKKGERKKQLKKVRK-ALKFGDDEV 171 (196)
T ss_pred HHHHHhCccceEEEEEEecCCCCCHHH--HHHHHHHHH---cCCcEEEEEECcccCCHHHHHHHHHHHHH-HHHhcCCce
Confidence 445554 467888999876543322 222233332 46889999999998765333322221111 011224579
Q ss_pred EEeccccCCCHHHHHHHHHHHHHh
Q 029446 156 QGTCALKGDGLYEGLDWLASTLKE 179 (193)
Q Consensus 156 ~~~Sa~~~~gi~~~~~~l~~~~~~ 179 (193)
+++||++++|++++++.|.+.+.+
T Consensus 172 ~~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 172 ILFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhcC
Confidence 999999999999999999887753
No 174
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.89 E-value=2e-22 Score=138.99 Aligned_cols=145 Identities=22% Similarity=0.162 Sum_probs=97.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEEEEEcCEEEEEEecCCCCC----CHHhHHhhhcCCCEEEEEEEC
Q 029446 19 RVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEK----LRPLWRHYFNNTDGLIYVVDS 94 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~~~~~~~~d~~i~v~d~ 94 (193)
+|+++|.+|+|||||+|++.+..... .++.++ .+... .+|||||... +.......++++|++++|+|+
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~~-~~~~~v-----~~~~~--~~iDtpG~~~~~~~~~~~~~~~~~~ad~il~v~d~ 74 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTLA-RKTQAV-----EFNDK--GDIDTPGEYFSHPRWYHALITTLQDVDMLIYVHGA 74 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCccC-ccceEE-----EECCC--CcccCCccccCCHHHHHHHHHHHhcCCEEEEEEeC
Confidence 79999999999999999988654221 122222 22111 2799999632 222223346899999999999
Q ss_pred CChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHHHHH
Q 029446 95 LDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLA 174 (193)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~ 174 (193)
++..++.. .|+..+ ..+.|+++++||+|+.+. ..+++.+.... .....|++++||++++|++++++.+.
T Consensus 75 ~~~~s~~~--~~~~~~-----~~~~~ii~v~nK~Dl~~~-~~~~~~~~~~~---~~~~~p~~~~Sa~~g~gi~~l~~~l~ 143 (158)
T PRK15467 75 NDPESRLP--AGLLDI-----GVSKRQIAVISKTDMPDA-DVAATRKLLLE---TGFEEPIFELNSHDPQSVQQLVDYLA 143 (158)
T ss_pred CCcccccC--HHHHhc-----cCCCCeEEEEEccccCcc-cHHHHHHHHHH---cCCCCCEEEEECCCccCHHHHHHHHH
Confidence 98766422 344433 136789999999998653 33333322211 11124899999999999999999999
Q ss_pred HHHHhhhc
Q 029446 175 STLKEMRA 182 (193)
Q Consensus 175 ~~~~~~~~ 182 (193)
+.+.+...
T Consensus 144 ~~~~~~~~ 151 (158)
T PRK15467 144 SLTKQEEA 151 (158)
T ss_pred Hhchhhhc
Confidence 88865543
No 175
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.89 E-value=1.2e-22 Score=145.57 Aligned_cols=158 Identities=15% Similarity=0.074 Sum_probs=100.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCc---c-c--cccccceeEEEEEEc---------------------------C----
Q 029446 18 MRVVMLGLDAAGKTTILYKLHIGEV---L-S--TVPTIGFNVEKVQYK---------------------------N---- 60 (193)
Q Consensus 18 ~~v~v~G~~~~GKssli~~l~~~~~---~-~--~~~t~~~~~~~~~~~---------------------------~---- 60 (193)
.+|+++|+.|+|||||+..+.+-.. . + ...+....+....+. .
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 4789999999999999999975421 1 1 111222221111110 2
Q ss_pred --EEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhH
Q 029446 61 --VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPME 138 (193)
Q Consensus 61 --~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~ 138 (193)
..+.+|||||++.+...+...+.++|++++|+|++++.........+..+... ...|+|+|+||+|+.+.....+
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~---~~~~iiivvNK~Dl~~~~~~~~ 157 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIM---GLKHIIIVQNKIDLVKEEQALE 157 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHc---CCCcEEEEEEchhccCHHHHHH
Confidence 68999999999998888888888999999999998632111111122222111 2357899999999976422222
Q ss_pred HHhhhCC--CcCCCCceEEEEeccccCCCHHHHHHHHHHHHH
Q 029446 139 VCEGLGL--FDLKNRKWHIQGTCALKGDGLYEGLDWLASTLK 178 (193)
Q Consensus 139 ~~~~~~~--~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~ 178 (193)
..+.+.. ......+++++++||++|+|+++++++|.+.+.
T Consensus 158 ~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~ 199 (203)
T cd01888 158 NYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIP 199 (203)
T ss_pred HHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCC
Confidence 1111110 001123567999999999999999999987664
No 176
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.89 E-value=6.2e-23 Score=135.10 Aligned_cols=109 Identities=31% Similarity=0.454 Sum_probs=81.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCcc---cccc----ccceeEEEEEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEE
Q 029446 19 RVVMLGLDAAGKTTILYKLHIGEVL---STVP----TIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYV 91 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~~~~~---~~~~----t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 91 (193)
||+|+|++|+|||||+++|.+.... .+.+ +.......+......+.+||++|++.+...+..++.++|++++|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 7999999999999999999998876 1122 22222233333445699999999998888777778999999999
Q ss_pred EECCChhhHHHHHHH---HHHHHcCCCCCCCeEEEEEeCCC
Q 029446 92 VDSLDRERIGKAKQE---FQAIIKDPFMLNSVILVFANKQD 129 (193)
Q Consensus 92 ~d~~~~~s~~~~~~~---~~~~~~~~~~~~~p~ivv~nK~D 129 (193)
||++++.+++++..+ +..+... ..+.|+|+|+||.|
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~~--~~~~piilv~nK~D 119 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRKR--DKNIPIILVGNKSD 119 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHHH--SSCSEEEEEEE-TC
T ss_pred EcCCChHHHHHHHHHHHHHHHHHcc--CCCCCEEEEEeccC
Confidence 999999999997544 4444432 25699999999998
No 177
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.89 E-value=1.2e-21 Score=158.76 Aligned_cols=157 Identities=23% Similarity=0.194 Sum_probs=110.5
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCcccc---ccccceeEEEEEEcCE-EEEEEecCCCCCCHHhHHhhhcCCCEEE
Q 029446 14 GNSEMRVVMLGLDAAGKTTILYKLHIGEVLST---VPTIGFNVEKVQYKNV-IFTVWDVGGQEKLRPLWRHYFNNTDGLI 89 (193)
Q Consensus 14 ~~~~~~v~v~G~~~~GKssli~~l~~~~~~~~---~~t~~~~~~~~~~~~~-~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (193)
..+..+|+++|++++|||||++++.+..+... ..|.......+.+.+. .+.+|||||++.|...+...+..+|+++
T Consensus 84 ~~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~~~r~rga~~aDiaI 163 (587)
T TIGR00487 84 VERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDGKMITFLDTPGHEAFTSMRARGAKVTDIVV 163 (587)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCCcEEEEEECCCCcchhhHHHhhhccCCEEE
Confidence 45778999999999999999999998776532 1233333344555333 8999999999999999988889999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCc--CC--CCceEEEEeccccCCC
Q 029446 90 YVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFD--LK--NRKWHIQGTCALKGDG 165 (193)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~Sa~~~~g 165 (193)
+|+|+++...-+.. ..+... ...+.|+|+++||+|+... ..+++...+.... .. ....+++++||++|+|
T Consensus 164 LVVda~dgv~~qT~-e~i~~~----~~~~vPiIVviNKiDl~~~-~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeG 237 (587)
T TIGR00487 164 LVVAADDGVMPQTI-EAISHA----KAANVPIIVAINKIDKPEA-NPDRVKQELSEYGLVPEDWGGDTIFVPVSALTGDG 237 (587)
T ss_pred EEEECCCCCCHhHH-HHHHHH----HHcCCCEEEEEECcccccC-CHHHHHHHHHHhhhhHHhcCCCceEEEEECCCCCC
Confidence 99999864322221 112222 1247899999999998653 2333333321110 01 1235799999999999
Q ss_pred HHHHHHHHHHH
Q 029446 166 LYEGLDWLAST 176 (193)
Q Consensus 166 i~~~~~~l~~~ 176 (193)
+++++++|...
T Consensus 238 I~eLl~~I~~~ 248 (587)
T TIGR00487 238 IDELLDMILLQ 248 (587)
T ss_pred hHHHHHhhhhh
Confidence 99999998753
No 178
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.89 E-value=1.2e-21 Score=135.67 Aligned_cols=153 Identities=19% Similarity=0.161 Sum_probs=103.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccccc---cccc-eeEEEEEEcCEEEEEEecCCCCCCHH--------hHHhhhc
Q 029446 16 SEMRVVMLGLDAAGKTTILYKLHIGEVLSTV---PTIG-FNVEKVQYKNVIFTVWDVGGQEKLRP--------LWRHYFN 83 (193)
Q Consensus 16 ~~~~v~v~G~~~~GKssli~~l~~~~~~~~~---~t~~-~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~~~~~~ 83 (193)
...+|+++|.+|+|||||+|++.+....... .+.. ............+.+|||||...... .....+.
T Consensus 2 ~~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 81 (168)
T cd04163 2 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALK 81 (168)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHH
Confidence 3578999999999999999999987654221 1111 11222334568899999999765433 2234567
Q ss_pred CCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC-CCCHhHHHhhhCCCcCCCCceEEEEecccc
Q 029446 84 NTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKG-AMTPMEVCEGLGLFDLKNRKWHIQGTCALK 162 (193)
Q Consensus 84 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (193)
.+|++++|+|++++. .....++...+.. .+.|+++|+||+|+.. .....+....+.. .....+++++|+++
T Consensus 82 ~~d~i~~v~d~~~~~--~~~~~~~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~---~~~~~~~~~~s~~~ 153 (168)
T cd04163 82 DVDLVLFVVDASEPI--GEGDEFILELLKK---SKTPVILVLNKIDLVKDKEDLLPLLEKLKE---LGPFAEIFPISALK 153 (168)
T ss_pred hCCEEEEEEECCCcc--CchHHHHHHHHHH---hCCCEEEEEEchhccccHHHHHHHHHHHHh---ccCCCceEEEEecc
Confidence 899999999998762 2222333333332 2588999999999884 3333333333321 12234799999999
Q ss_pred CCCHHHHHHHHHHH
Q 029446 163 GDGLYEGLDWLAST 176 (193)
Q Consensus 163 ~~gi~~~~~~l~~~ 176 (193)
+.|++++++.|.+.
T Consensus 154 ~~~~~~l~~~l~~~ 167 (168)
T cd04163 154 GENVDELLEEIVKY 167 (168)
T ss_pred CCChHHHHHHHHhh
Confidence 99999999999765
No 179
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.89 E-value=1.1e-21 Score=134.86 Aligned_cols=150 Identities=22% Similarity=0.146 Sum_probs=106.6
Q ss_pred EEcCCCCCHHHHHHHHhcCCcccc----ccccceeEEEEEEc-CEEEEEEecCCCCCCHH-------hHHhhhcCCCEEE
Q 029446 22 MLGLDAAGKTTILYKLHIGEVLST----VPTIGFNVEKVQYK-NVIFTVWDVGGQEKLRP-------LWRHYFNNTDGLI 89 (193)
Q Consensus 22 v~G~~~~GKssli~~l~~~~~~~~----~~t~~~~~~~~~~~-~~~~~i~D~~g~~~~~~-------~~~~~~~~~d~~i 89 (193)
++|++|+|||||++++.+...... ..+........... ...+.+||+||...... ....++..+|+++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il 80 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERADLIL 80 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEE
Confidence 589999999999999998765521 22222333333333 67899999999766542 3445778999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHH
Q 029446 90 YVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEG 169 (193)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~ 169 (193)
+|+|+.+........ +..... ..+.|+++|+||+|+.......+..+............+++++||+++.|++++
T Consensus 81 ~v~~~~~~~~~~~~~-~~~~~~----~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l 155 (163)
T cd00880 81 FVVDADLRADEEEEK-LLELLR----ERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDEL 155 (163)
T ss_pred EEEeCCCCCCHHHHH-HHHHHH----hcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHH
Confidence 999999887666654 233322 257899999999999876544443221222223455678999999999999999
Q ss_pred HHHHHHH
Q 029446 170 LDWLAST 176 (193)
Q Consensus 170 ~~~l~~~ 176 (193)
++++.+.
T Consensus 156 ~~~l~~~ 162 (163)
T cd00880 156 REALIEA 162 (163)
T ss_pred HHHHHhh
Confidence 9998875
No 180
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.89 E-value=2.4e-22 Score=142.55 Aligned_cols=157 Identities=24% Similarity=0.216 Sum_probs=113.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCcc---------------------ccccccceeEEEEE--EcCEEEEEEecCCCC
Q 029446 16 SEMRVVMLGLDAAGKTTILYKLHIGEVL---------------------STVPTIGFNVEKVQ--YKNVIFTVWDVGGQE 72 (193)
Q Consensus 16 ~~~~v~v~G~~~~GKssli~~l~~~~~~---------------------~~~~t~~~~~~~~~--~~~~~~~i~D~~g~~ 72 (193)
+..+|+++|+.++|||||+++|...... ....|.......+. .....+.++|+||+.
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 4578999999999999999999853311 11345556666777 788999999999999
Q ss_pred CCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhH----HHhhh-CCCc
Q 029446 73 KLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPME----VCEGL-GLFD 147 (193)
Q Consensus 73 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~----~~~~~-~~~~ 147 (193)
.|.......+..+|++++|+|+.+...-+. ...+..+.. .+.|+|+|+||+|+... ...+ +...+ ....
T Consensus 82 ~f~~~~~~~~~~~D~ailvVda~~g~~~~~-~~~l~~~~~----~~~p~ivvlNK~D~~~~-~~~~~~~~~~~~l~~~~~ 155 (188)
T PF00009_consen 82 DFIKEMIRGLRQADIAILVVDANDGIQPQT-EEHLKILRE----LGIPIIVVLNKMDLIEK-ELEEIIEEIKEKLLKEYG 155 (188)
T ss_dssp HHHHHHHHHHTTSSEEEEEEETTTBSTHHH-HHHHHHHHH----TT-SEEEEEETCTSSHH-HHHHHHHHHHHHHHHHTT
T ss_pred ceeecccceecccccceeeeeccccccccc-ccccccccc----cccceEEeeeeccchhh-hHHHHHHHHHHHhccccc
Confidence 999988888999999999999986533222 222333322 57889999999999832 2222 22122 1111
Q ss_pred CCC-CceEEEEeccccCCCHHHHHHHHHHHHH
Q 029446 148 LKN-RKWHIQGTCALKGDGLYEGLDWLASTLK 178 (193)
Q Consensus 148 ~~~-~~~~~~~~Sa~~~~gi~~~~~~l~~~~~ 178 (193)
... ..++++++||.+|.|++++++.|.+.++
T Consensus 156 ~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 156 ENGEEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp STTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred cCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 122 4679999999999999999999998874
No 181
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.89 E-value=2.2e-22 Score=141.69 Aligned_cols=149 Identities=16% Similarity=0.160 Sum_probs=97.2
Q ss_pred hhhcCCCccEEEEEcCCCCCHHHHHHHHhcCCc-cccccccceeEE--EEEEcCEEEEEEecCCCC----------CCHH
Q 029446 10 DVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEV-LSTVPTIGFNVE--KVQYKNVIFTVWDVGGQE----------KLRP 76 (193)
Q Consensus 10 ~~~~~~~~~~v~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~~~--~~~~~~~~~~i~D~~g~~----------~~~~ 76 (193)
...+..+.++|+++|.+|+|||||+|++++..+ ..+.++.+.+.. .+..+ -.+.+|||||.. .+..
T Consensus 11 ~~~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~liDtpG~~~~~~~~~~~~~~~~ 89 (179)
T TIGR03598 11 KQLPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVN-DGFRLVDLPGYGYAKVSKEEKEKWQK 89 (179)
T ss_pred hhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeC-CcEEEEeCCCCccccCChhHHHHHHH
Confidence 345668889999999999999999999998763 333344443322 12222 379999999943 2333
Q ss_pred hHHhhhc---CCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH----hHHHhhhCCCcCC
Q 029446 77 LWRHYFN---NTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP----MEVCEGLGLFDLK 149 (193)
Q Consensus 77 ~~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~----~~~~~~~~~~~~~ 149 (193)
....+++ .++++++|+|++++.+..+. ..+. .+.. .+.|+++++||+|+.+..+. +++.+.+...
T Consensus 90 ~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~-~~~~-~~~~---~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~--- 161 (179)
T TIGR03598 90 LIEEYLEKRENLKGVVLLMDIRHPLKELDL-EMLE-WLRE---RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKD--- 161 (179)
T ss_pred HHHHHHHhChhhcEEEEEecCCCCCCHHHH-HHHH-HHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhc---
Confidence 3344544 36899999999875444443 2222 3332 46899999999998764322 2333333321
Q ss_pred CCceEEEEeccccCCCHH
Q 029446 150 NRKWHIQGTCALKGDGLY 167 (193)
Q Consensus 150 ~~~~~~~~~Sa~~~~gi~ 167 (193)
....+++++||++|+|++
T Consensus 162 ~~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 162 ADDPSVQLFSSLKKTGID 179 (179)
T ss_pred cCCCceEEEECCCCCCCC
Confidence 223479999999999974
No 182
>PRK00089 era GTPase Era; Reviewed
Probab=99.89 E-value=8.8e-22 Score=148.71 Aligned_cols=156 Identities=23% Similarity=0.243 Sum_probs=106.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccccc---cccceeEEE-EEEcCEEEEEEecCCCCCCH--------HhHHhhhc
Q 029446 16 SEMRVVMLGLDAAGKTTILYKLHIGEVLSTV---PTIGFNVEK-VQYKNVIFTVWDVGGQEKLR--------PLWRHYFN 83 (193)
Q Consensus 16 ~~~~v~v~G~~~~GKssli~~l~~~~~~~~~---~t~~~~~~~-~~~~~~~~~i~D~~g~~~~~--------~~~~~~~~ 83 (193)
+.-.|+++|.+|||||||+|++++....... .|+...... ......++.+|||||..... ......+.
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~ 83 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLK 83 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHHHh
Confidence 4567999999999999999999998765322 222222222 23355899999999965432 22344568
Q ss_pred CCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC-CCHhHHHhhhCCCcCCCCceEEEEecccc
Q 029446 84 NTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA-MTPMEVCEGLGLFDLKNRKWHIQGTCALK 162 (193)
Q Consensus 84 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (193)
++|++++|+|+++. +.....++...+.. .+.|+++|+||+|+... ....+..+.+.. .....+++++||++
T Consensus 84 ~~D~il~vvd~~~~--~~~~~~~i~~~l~~---~~~pvilVlNKiDl~~~~~~l~~~~~~l~~---~~~~~~i~~iSA~~ 155 (292)
T PRK00089 84 DVDLVLFVVDADEK--IGPGDEFILEKLKK---VKTPVILVLNKIDLVKDKEELLPLLEELSE---LMDFAEIVPISALK 155 (292)
T ss_pred cCCEEEEEEeCCCC--CChhHHHHHHHHhh---cCCCEEEEEECCcCCCCHHHHHHHHHHHHh---hCCCCeEEEecCCC
Confidence 89999999999873 22233333343332 46899999999999842 222233333321 11234799999999
Q ss_pred CCCHHHHHHHHHHHHHh
Q 029446 163 GDGLYEGLDWLASTLKE 179 (193)
Q Consensus 163 ~~gi~~~~~~l~~~~~~ 179 (193)
+.|+++++++|.+.+.+
T Consensus 156 ~~gv~~L~~~L~~~l~~ 172 (292)
T PRK00089 156 GDNVDELLDVIAKYLPE 172 (292)
T ss_pred CCCHHHHHHHHHHhCCC
Confidence 99999999999998854
No 183
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.88 E-value=1.4e-21 Score=159.04 Aligned_cols=152 Identities=17% Similarity=0.201 Sum_probs=110.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC-------cc-cccc------ccceeEE----EEEE-----cCEEEEEEecCCCCCCH
Q 029446 19 RVVMLGLDAAGKTTILYKLHIGE-------VL-STVP------TIGFNVE----KVQY-----KNVIFTVWDVGGQEKLR 75 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~~~-------~~-~~~~------t~~~~~~----~~~~-----~~~~~~i~D~~g~~~~~ 75 (193)
+|+++|+.++|||||+++|.... +. .+.. +.|+++. .+.+ ..+.+.+|||||+.+|.
T Consensus 5 Ni~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF~ 84 (595)
T TIGR01393 5 NFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFS 84 (595)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHHH
Confidence 79999999999999999998642 11 1111 2233332 2333 23789999999999999
Q ss_pred HhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH---hHHHhhhCCCcCCCCc
Q 029446 76 PLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP---MEVCEGLGLFDLKNRK 152 (193)
Q Consensus 76 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~---~~~~~~~~~~~~~~~~ 152 (193)
..+..+++.+|++++|+|+++..+.+....|+... . .+.|+|+|+||+|+...... +++.+.++.. .
T Consensus 85 ~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~-~----~~ipiIiViNKiDl~~~~~~~~~~el~~~lg~~-----~ 154 (595)
T TIGR01393 85 YEVSRSLAACEGALLLVDAAQGIEAQTLANVYLAL-E----NDLEIIPVINKIDLPSADPERVKKEIEEVIGLD-----A 154 (595)
T ss_pred HHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHH-H----cCCCEEEEEECcCCCccCHHHHHHHHHHHhCCC-----c
Confidence 99999999999999999999876666655554332 2 36789999999998754221 2333333321 1
Q ss_pred eEEEEeccccCCCHHHHHHHHHHHHHhh
Q 029446 153 WHIQGTCALKGDGLYEGLDWLASTLKEM 180 (193)
Q Consensus 153 ~~~~~~Sa~~~~gi~~~~~~l~~~~~~~ 180 (193)
..++++||++|.|+++++++|.+.+..-
T Consensus 155 ~~vi~vSAktG~GI~~Lle~I~~~lp~p 182 (595)
T TIGR01393 155 SEAILASAKTGIGIEEILEAIVKRVPPP 182 (595)
T ss_pred ceEEEeeccCCCCHHHHHHHHHHhCCCC
Confidence 2589999999999999999999887543
No 184
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.88 E-value=1.8e-21 Score=162.11 Aligned_cols=159 Identities=14% Similarity=0.058 Sum_probs=111.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCcc--c-c-ccccceeEEEEEEcCEEEEEEecCCCCC----------CHHh-HHh
Q 029446 16 SEMRVVMLGLDAAGKTTILYKLHIGEVL--S-T-VPTIGFNVEKVQYKNVIFTVWDVGGQEK----------LRPL-WRH 80 (193)
Q Consensus 16 ~~~~v~v~G~~~~GKssli~~l~~~~~~--~-~-~~t~~~~~~~~~~~~~~~~i~D~~g~~~----------~~~~-~~~ 80 (193)
..++|+++|.+|+|||||+|++.+.... . + +.|.+.....+.+++..+.+|||||..+ +... ...
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~ 528 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQA 528 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHHHHH
Confidence 4589999999999999999999998742 2 2 2333333345566777899999999532 2111 134
Q ss_pred hhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEecc
Q 029446 81 YFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCA 160 (193)
Q Consensus 81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (193)
+++.+|++++|+|+++..+.+... ++..+.. .++|+|+|+||+|+.+....+.+.+.+..........+++.+||
T Consensus 529 ~i~~advvilViDat~~~s~~~~~-i~~~~~~----~~~piIiV~NK~DL~~~~~~~~~~~~~~~~l~~~~~~~ii~iSA 603 (712)
T PRK09518 529 AIERSELALFLFDASQPISEQDLK-VMSMAVD----AGRALVLVFNKWDLMDEFRRQRLERLWKTEFDRVTWARRVNLSA 603 (712)
T ss_pred HhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH----cCCCEEEEEEchhcCChhHHHHHHHHHHHhccCCCCCCEEEEEC
Confidence 468899999999999887776653 3444432 46899999999999865333333332221111122346899999
Q ss_pred ccCCCHHHHHHHHHHHHHh
Q 029446 161 LKGDGLYEGLDWLASTLKE 179 (193)
Q Consensus 161 ~~~~gi~~~~~~l~~~~~~ 179 (193)
++|.|++++++.+.+.+..
T Consensus 604 ktg~gv~~L~~~i~~~~~~ 622 (712)
T PRK09518 604 KTGWHTNRLAPAMQEALES 622 (712)
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999999888765
No 185
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.88 E-value=2.4e-21 Score=153.85 Aligned_cols=160 Identities=15% Similarity=0.116 Sum_probs=110.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCcccccc----ccceeEEEEEEcCEEEEEEecCCCCCCHH-----------hHH
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVP----TIGFNVEKVQYKNVIFTVWDVGGQEKLRP-----------LWR 79 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~~~~~----t~~~~~~~~~~~~~~~~i~D~~g~~~~~~-----------~~~ 79 (193)
...++|+++|.+|+|||||+|++++.......+ |.......+...+..+.+|||||...... ...
T Consensus 171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~ 250 (435)
T PRK00093 171 DEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTL 250 (435)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHH
Confidence 356999999999999999999999876432222 22222234455778899999999543211 123
Q ss_pred hhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEec
Q 029446 80 HYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTC 159 (193)
Q Consensus 80 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (193)
.+++.+|++++|+|++++.+.+.. ..+..+.. .+.|+|+|+||+|+.+.....++.+.+.........++++++|
T Consensus 251 ~~~~~ad~~ilViD~~~~~~~~~~-~i~~~~~~----~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~i~~~S 325 (435)
T PRK00093 251 KAIERADVVLLVIDATEGITEQDL-RIAGLALE----AGRALVIVVNKWDLVDEKTMEEFKKELRRRLPFLDYAPIVFIS 325 (435)
T ss_pred HHHHHCCEEEEEEeCCCCCCHHHH-HHHHHHHH----cCCcEEEEEECccCCCHHHHHHHHHHHHHhcccccCCCEEEEe
Confidence 467889999999999987665543 22333322 4689999999999985433334443333221223456899999
Q ss_pred cccCCCHHHHHHHHHHHHHh
Q 029446 160 ALKGDGLYEGLDWLASTLKE 179 (193)
Q Consensus 160 a~~~~gi~~~~~~l~~~~~~ 179 (193)
|+++.|++++++.+.+....
T Consensus 326 A~~~~gv~~l~~~i~~~~~~ 345 (435)
T PRK00093 326 ALTGQGVDKLLEAIDEAYEN 345 (435)
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 99999999999998876653
No 186
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.88 E-value=3.2e-21 Score=130.90 Aligned_cols=157 Identities=24% Similarity=0.286 Sum_probs=128.8
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhcCCcc---------cc----ccccceeEEEEEEcC-EEEEEEecCCCCCCHHhH
Q 029446 13 FGNSEMRVVMLGLDAAGKTTILYKLHIGEVL---------ST----VPTIGFNVEKVQYKN-VIFTVWDVGGQEKLRPLW 78 (193)
Q Consensus 13 ~~~~~~~v~v~G~~~~GKssli~~l~~~~~~---------~~----~~t~~~~~~~~~~~~-~~~~i~D~~g~~~~~~~~ 78 (193)
.+....||+|.|+.++||||+++.++..... .. ..|+.+++......+ ..+.+++||||++|+..|
T Consensus 6 ~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~fm~ 85 (187)
T COG2229 6 NKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERFKFMW 85 (187)
T ss_pred ccccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHHHHHHH
Confidence 3457789999999999999999999987631 11 256677777777755 899999999999999999
Q ss_pred HhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEe
Q 029446 79 RHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGT 158 (193)
Q Consensus 79 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (193)
..++++++++++++|.+++..+ .....+..+... ..+|++|++||.|+.+...++++.+.+.... ..+++++.
T Consensus 86 ~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~---~~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~---~~~~vi~~ 158 (187)
T COG2229 86 EILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSR---NPIPVVVAINKQDLFDALPPEKIREALKLEL---LSVPVIEI 158 (187)
T ss_pred HHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhc---cCCCEEEEeeccccCCCCCHHHHHHHHHhcc---CCCceeee
Confidence 9999999999999999999988 433434443332 1299999999999999989999988887643 56789999
Q ss_pred ccccCCCHHHHHHHHHHH
Q 029446 159 CALKGDGLYEGLDWLAST 176 (193)
Q Consensus 159 Sa~~~~gi~~~~~~l~~~ 176 (193)
+|.++++..+.++.+..+
T Consensus 159 ~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 159 DATEGEGARDQLDVLLLK 176 (187)
T ss_pred ecccchhHHHHHHHHHhh
Confidence 999999999988887765
No 187
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.88 E-value=2.3e-21 Score=150.44 Aligned_cols=160 Identities=19% Similarity=0.129 Sum_probs=113.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCcc--cc-ccccceeEEEEEEcC-EEEEEEecCCCCCC-------HHhHHhhhcCCCE
Q 029446 19 RVVMLGLDAAGKTTILYKLHIGEVL--ST-VPTIGFNVEKVQYKN-VIFTVWDVGGQEKL-------RPLWRHYFNNTDG 87 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~~~~~--~~-~~t~~~~~~~~~~~~-~~~~i~D~~g~~~~-------~~~~~~~~~~~d~ 87 (193)
.|+++|.||||||||+|++++.... .+ .+|.......+.... .++.++|+||..+- .......++.+++
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radv 240 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLERCRV 240 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHHHhCCE
Confidence 7999999999999999999986543 22 356667777777754 56999999995431 1122335688999
Q ss_pred EEEEEECC---ChhhHHHHHHHHHHHHcC-CCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccC
Q 029446 88 LIYVVDSL---DRERIGKAKQEFQAIIKD-PFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKG 163 (193)
Q Consensus 88 ~i~v~d~~---~~~s~~~~~~~~~~~~~~-~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (193)
+++|+|++ +...++....++.++... ....++|.|+|+||+|+.......+..+.+... .....+++++||+++
T Consensus 241 lL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~~~--~~~~~~Vi~ISA~tg 318 (390)
T PRK12298 241 LLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKAIVEA--LGWEGPVYLISAASG 318 (390)
T ss_pred EEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHHHHHHHHHHHH--hCCCCCEEEEECCCC
Confidence 99999998 455666666666665542 123468999999999987653332222222110 011225899999999
Q ss_pred CCHHHHHHHHHHHHHhh
Q 029446 164 DGLYEGLDWLASTLKEM 180 (193)
Q Consensus 164 ~gi~~~~~~l~~~~~~~ 180 (193)
.|++++++.|.+.+.+.
T Consensus 319 ~GIdeLl~~I~~~L~~~ 335 (390)
T PRK12298 319 LGVKELCWDLMTFIEEN 335 (390)
T ss_pred cCHHHHHHHHHHHhhhC
Confidence 99999999999988654
No 188
>COG1159 Era GTPase [General function prediction only]
Probab=99.88 E-value=5.6e-22 Score=144.68 Aligned_cols=158 Identities=22% Similarity=0.190 Sum_probs=111.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCcccccc---ccceeE-EEEEEcCEEEEEEecCCCCC--------CHHhHHhhh
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVP---TIGFNV-EKVQYKNVIFTVWDVGGQEK--------LRPLWRHYF 82 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~~~~~---t~~~~~-~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~~ 82 (193)
.+.--|+++|.||+|||||+|++.+...+...+ |+.-.+ ..+..+..++.+.||||--+ +.......+
T Consensus 4 ~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl 83 (298)
T COG1159 4 FKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSAL 83 (298)
T ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHh
Confidence 345578999999999999999999998774433 222222 34455789999999999222 223345566
Q ss_pred cCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCcCCCCceEEEEeccc
Q 029446 83 NNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT-PMEVCEGLGLFDLKNRKWHIQGTCAL 161 (193)
Q Consensus 83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (193)
..+|+++||+|+++... .-..++.+.++. .+.|+|+++||+|..+... .....+.+... .....++++||+
T Consensus 84 ~dvDlilfvvd~~~~~~--~~d~~il~~lk~---~~~pvil~iNKID~~~~~~~l~~~~~~~~~~---~~f~~ivpiSA~ 155 (298)
T COG1159 84 KDVDLILFVVDADEGWG--PGDEFILEQLKK---TKTPVILVVNKIDKVKPKTVLLKLIAFLKKL---LPFKEIVPISAL 155 (298)
T ss_pred ccCcEEEEEEeccccCC--ccHHHHHHHHhh---cCCCeEEEEEccccCCcHHHHHHHHHHHHhh---CCcceEEEeecc
Confidence 78999999999987433 233444444433 4679999999999888755 23333333221 112279999999
Q ss_pred cCCCHHHHHHHHHHHHHhh
Q 029446 162 KGDGLYEGLDWLASTLKEM 180 (193)
Q Consensus 162 ~~~gi~~~~~~l~~~~~~~ 180 (193)
+|.|++.+.+.+..++.+-
T Consensus 156 ~g~n~~~L~~~i~~~Lpeg 174 (298)
T COG1159 156 KGDNVDTLLEIIKEYLPEG 174 (298)
T ss_pred ccCCHHHHHHHHHHhCCCC
Confidence 9999999999999988653
No 189
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.88 E-value=4.2e-21 Score=159.16 Aligned_cols=154 Identities=22% Similarity=0.178 Sum_probs=111.9
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCcccc---ccccceeEEEEEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEE
Q 029446 14 GNSEMRVVMLGLDAAGKTTILYKLHIGEVLST---VPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIY 90 (193)
Q Consensus 14 ~~~~~~v~v~G~~~~GKssli~~l~~~~~~~~---~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 90 (193)
..+...|+++|+.++|||||+++|.+..+... ..|.......+.+.+..+.+|||||++.|...+...+..+|++++
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F~~m~~rga~~aDiaIL 366 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNGGKITFLDTPGHEAFTAMRARGAQVTDIVVL 366 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECCEEEEEEECCCCccchhHHHhhhhhCCEEEE
Confidence 45889999999999999999999988766521 123333334556667899999999999999999988899999999
Q ss_pred EEECCCh---hhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCC--cCC--CCceEEEEeccccC
Q 029446 91 VVDSLDR---ERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLF--DLK--NRKWHIQGTCALKG 163 (193)
Q Consensus 91 v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~Sa~~~ 163 (193)
|+|+++. ++.+. +... ...+.|+|+++||+|+... ..+++...+... ... ...++++++||++|
T Consensus 367 VVdAddGv~~qT~e~----i~~a----~~~~vPiIVviNKiDl~~a-~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG 437 (787)
T PRK05306 367 VVAADDGVMPQTIEA----INHA----KAAGVPIIVAINKIDKPGA-NPDRVKQELSEYGLVPEEWGGDTIFVPVSAKTG 437 (787)
T ss_pred EEECCCCCCHhHHHH----HHHH----HhcCCcEEEEEECcccccc-CHHHHHHHHHHhcccHHHhCCCceEEEEeCCCC
Confidence 9999874 33222 2222 1257899999999999654 223333222110 011 12368999999999
Q ss_pred CCHHHHHHHHHHH
Q 029446 164 DGLYEGLDWLAST 176 (193)
Q Consensus 164 ~gi~~~~~~l~~~ 176 (193)
+|+++++++|...
T Consensus 438 ~GI~eLle~I~~~ 450 (787)
T PRK05306 438 EGIDELLEAILLQ 450 (787)
T ss_pred CCchHHHHhhhhh
Confidence 9999999998754
No 190
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.88 E-value=1.2e-22 Score=133.71 Aligned_cols=167 Identities=15% Similarity=0.181 Sum_probs=132.6
Q ss_pred hhcCCCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEEE----EEEcCEEEEEEecCCCCCCHHhHHhhhcCC
Q 029446 11 VFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVEK----VQYKNVIFTVWDVGGQEKLRPLWRHYFNNT 85 (193)
Q Consensus 11 ~~~~~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~----~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 85 (193)
...+...+||.++|++..|||||+-.+.++... ++..+.|++... +....+.+.|||.+|++++....+....++
T Consensus 14 a~~n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~ds 93 (205)
T KOG1673|consen 14 AVSNLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDS 93 (205)
T ss_pred ccccceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCc
Confidence 345557799999999999999999999998885 566788887653 333578999999999999999999999999
Q ss_pred CEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcCCCCceEEEEeccccC
Q 029446 86 DGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT--PMEVCEGLGLFDLKNRKWHIQGTCALKG 163 (193)
Q Consensus 86 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (193)
-+++++||+++++++..+..|+.+....+. ..-.|+|++|.|+.-... .++.....+...++-.+.+.|.||+.++
T Consensus 94 vaIlFmFDLt~r~TLnSi~~WY~QAr~~Nk--tAiPilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~s 171 (205)
T KOG1673|consen 94 VAILFMFDLTRRSTLNSIKEWYRQARGLNK--TAIPILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHS 171 (205)
T ss_pred EEEEEEEecCchHHHHHHHHHHHHHhccCC--ccceEEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeecccc
Confidence 999999999999999999999999987643 333468999999754322 2222222233334556668999999999
Q ss_pred CCHHHHHHHHHHHHHh
Q 029446 164 DGLYEGLDWLASTLKE 179 (193)
Q Consensus 164 ~gi~~~~~~l~~~~~~ 179 (193)
.|++.+|..+..++..
T Consensus 172 INv~KIFK~vlAklFn 187 (205)
T KOG1673|consen 172 INVQKIFKIVLAKLFN 187 (205)
T ss_pred ccHHHHHHHHHHHHhC
Confidence 9999999998887754
No 191
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.87 E-value=1.2e-21 Score=159.35 Aligned_cols=154 Identities=21% Similarity=0.119 Sum_probs=110.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC---cc-cc--ccccceeEEEEEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEE
Q 029446 18 MRVVMLGLDAAGKTTILYKLHIGE---VL-ST--VPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYV 91 (193)
Q Consensus 18 ~~v~v~G~~~~GKssli~~l~~~~---~~-~~--~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 91 (193)
+.|+++|++++|||||+++|++.. ++ ++ ..|....+..+...+..+.+||+||++.|.......+.++|++++|
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe~f~~~~~~g~~~aD~aILV 80 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHEKFISNAIAGGGGIDAALLV 80 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHHHHHHHHHhhhccCCEEEEE
Confidence 478999999999999999999743 22 22 2344444555666778999999999999999888888999999999
Q ss_pred EECCC---hhhHHHHHHHHHHHHcCCCCCCCe-EEEEEeCCCCCCCCCHhH----HHhhhCCCcCCCCceEEEEeccccC
Q 029446 92 VDSLD---RERIGKAKQEFQAIIKDPFMLNSV-ILVFANKQDMKGAMTPME----VCEGLGLFDLKNRKWHIQGTCALKG 163 (193)
Q Consensus 92 ~d~~~---~~s~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~~~----~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (193)
+|+++ +++.+.+. ++.. .++| +|+|+||+|+.+....+. +.+.+.... ...+++++++||++|
T Consensus 81 VDa~~G~~~qT~ehl~-----il~~---lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~-~~~~~~ii~vSA~tG 151 (581)
T TIGR00475 81 VDADEGVMTQTGEHLA-----VLDL---LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYI-FLKNAKIFKTSAKTG 151 (581)
T ss_pred EECCCCCcHHHHHHHH-----HHHH---cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhC-CCCCCcEEEEeCCCC
Confidence 99987 34433331 2222 3566 999999999986532222 111111000 011568999999999
Q ss_pred CCHHHHHHHHHHHHHhh
Q 029446 164 DGLYEGLDWLASTLKEM 180 (193)
Q Consensus 164 ~gi~~~~~~l~~~~~~~ 180 (193)
+|++++++.+.+.+...
T Consensus 152 ~GI~eL~~~L~~l~~~~ 168 (581)
T TIGR00475 152 QGIGELKKELKNLLESL 168 (581)
T ss_pred CCchhHHHHHHHHHHhC
Confidence 99999999998877544
No 192
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.87 E-value=7.2e-21 Score=156.57 Aligned_cols=158 Identities=21% Similarity=0.189 Sum_probs=111.4
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCcccc---ccccceeEEE--EEE--cCEEEEEEecCCCCCCHHhHHhhhcCCC
Q 029446 14 GNSEMRVVMLGLDAAGKTTILYKLHIGEVLST---VPTIGFNVEK--VQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTD 86 (193)
Q Consensus 14 ~~~~~~v~v~G~~~~GKssli~~l~~~~~~~~---~~t~~~~~~~--~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d 86 (193)
..+..+|+++|+.++|||||+++|.+..+... ..|....... +.. ....+.+|||||++.|...+..++..+|
T Consensus 241 ~~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aD 320 (742)
T CHL00189 241 INRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTD 320 (742)
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCC
Confidence 45778999999999999999999998766532 1232222222 222 3589999999999999999998999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCc--CC--CCceEEEEecccc
Q 029446 87 GLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFD--LK--NRKWHIQGTCALK 162 (193)
Q Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~Sa~~ 162 (193)
++++|+|+++....+... .+..+ . ..+.|+|+++||+|+... ...++...+.... .. ...++++++||++
T Consensus 321 iaILVVDA~dGv~~QT~E-~I~~~-k---~~~iPiIVViNKiDl~~~-~~e~v~~eL~~~~ll~e~~g~~vpvv~VSAkt 394 (742)
T CHL00189 321 IAILIIAADDGVKPQTIE-AINYI-Q---AANVPIIVAINKIDKANA-NTERIKQQLAKYNLIPEKWGGDTPMIPISASQ 394 (742)
T ss_pred EEEEEEECcCCCChhhHH-HHHHH-H---hcCceEEEEEECCCcccc-CHHHHHHHHHHhccchHhhCCCceEEEEECCC
Confidence 999999998743222221 12222 1 257899999999998764 2333333322110 11 1236899999999
Q ss_pred CCCHHHHHHHHHHHH
Q 029446 163 GDGLYEGLDWLASTL 177 (193)
Q Consensus 163 ~~gi~~~~~~l~~~~ 177 (193)
|+|+++++++|....
T Consensus 395 G~GIdeLle~I~~l~ 409 (742)
T CHL00189 395 GTNIDKLLETILLLA 409 (742)
T ss_pred CCCHHHHHHhhhhhh
Confidence 999999999998764
No 193
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.87 E-value=1.5e-20 Score=137.16 Aligned_cols=149 Identities=22% Similarity=0.191 Sum_probs=103.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCcc--cc-ccccceeEEEEEEcCEEEEEEecCCCCCCH-------HhHHhhhcCCCEE
Q 029446 19 RVVMLGLDAAGKTTILYKLHIGEVL--ST-VPTIGFNVEKVQYKNVIFTVWDVGGQEKLR-------PLWRHYFNNTDGL 88 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~~~~~--~~-~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~-------~~~~~~~~~~d~~ 88 (193)
+|+++|.+|+|||||++++.+.... .+ .+|.......+.+.+..+++||+||..+.. .....+++++|++
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~i 81 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTADLI 81 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECCeEEEEEECCCcccccccchhHHHHHHHhhccCCEE
Confidence 6899999999999999999987643 22 345556666777888999999999975332 2334577899999
Q ss_pred EEEEECCChh-hHHHHHHHHH----------------------------------------HHHcCC-------------
Q 029446 89 IYVVDSLDRE-RIGKAKQEFQ----------------------------------------AIIKDP------------- 114 (193)
Q Consensus 89 i~v~d~~~~~-s~~~~~~~~~----------------------------------------~~~~~~------------- 114 (193)
++|+|++++. ..+.+...+. .++++.
T Consensus 82 l~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~~~ 161 (233)
T cd01896 82 LMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIREDI 161 (233)
T ss_pred EEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEccCC
Confidence 9999998754 2222222221 111100
Q ss_pred -----------CCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHHHHHHHH
Q 029446 115 -----------FMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTL 177 (193)
Q Consensus 115 -----------~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~ 177 (193)
...-+|+++|+||+|+.+.. +... +. +. .+++++||+++.|++++++.+.+.+
T Consensus 162 ~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~~---~~~~-~~----~~--~~~~~~SA~~g~gi~~l~~~i~~~L 225 (233)
T cd01896 162 TVDDLIDVIEGNRVYIPCLYVYNKIDLISIE---ELDL-LA----RQ--PNSVVISAEKGLNLDELKERIWDKL 225 (233)
T ss_pred CHHHHHHHHhCCceEeeEEEEEECccCCCHH---HHHH-Hh----cC--CCEEEEcCCCCCCHHHHHHHHHHHh
Confidence 01236899999999987542 2221 11 11 2489999999999999999999876
No 194
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.86 E-value=6.5e-21 Score=150.73 Aligned_cols=155 Identities=18% Similarity=0.162 Sum_probs=104.0
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCcc----------------------------------ccccccceeEEEEEEc
Q 029446 14 GNSEMRVVMLGLDAAGKTTILYKLHIGEVL----------------------------------STVPTIGFNVEKVQYK 59 (193)
Q Consensus 14 ~~~~~~v~v~G~~~~GKssli~~l~~~~~~----------------------------------~~~~t~~~~~~~~~~~ 59 (193)
....++|+++|++++|||||+++|+...-. ....|.......+..+
T Consensus 3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~ 82 (425)
T PRK12317 3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETD 82 (425)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecC
Confidence 456799999999999999999999832110 1234555556667778
Q ss_pred CEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--H-
Q 029446 60 NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT--P- 136 (193)
Q Consensus 60 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~- 136 (193)
...+.+|||||+++|.......+..+|++++|+|+++..++.....++..+.... ...|+++++||+|+.+... .
T Consensus 83 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~--~~~~iivviNK~Dl~~~~~~~~~ 160 (425)
T PRK12317 83 KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL--GINQLIVAINKMDAVNYDEKRYE 160 (425)
T ss_pred CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc--CCCeEEEEEEccccccccHHHHH
Confidence 8999999999999887766666789999999999986322222222222222221 2246899999999976321 1
Q ss_pred ---hHHHhhhCCCcCCCCceEEEEeccccCCCHHHHH
Q 029446 137 ---MEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGL 170 (193)
Q Consensus 137 ---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~ 170 (193)
+++.+.+.........++++++||++|+|+++..
T Consensus 161 ~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~ 197 (425)
T PRK12317 161 EVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKS 197 (425)
T ss_pred HHHHHHHHHHHhhCCCcCcceEEEeecccCCCccccc
Confidence 1222222211122234689999999999998743
No 195
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.86 E-value=3e-20 Score=151.41 Aligned_cols=155 Identities=17% Similarity=0.176 Sum_probs=109.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCC--cc---------cc---cccccee----EEEEEE-----cCEEEEEEecCCCC
Q 029446 16 SEMRVVMLGLDAAGKTTILYKLHIGE--VL---------ST---VPTIGFN----VEKVQY-----KNVIFTVWDVGGQE 72 (193)
Q Consensus 16 ~~~~v~v~G~~~~GKssli~~l~~~~--~~---------~~---~~t~~~~----~~~~~~-----~~~~~~i~D~~g~~ 72 (193)
+.-+++++|+.++|||||+.+|.... +. ++ ..+.|++ ...+.+ ..+.+.+|||||+.
T Consensus 6 ~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~ 85 (600)
T PRK05433 6 NIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHV 85 (600)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcH
Confidence 33489999999999999999997521 11 11 1122322 223333 26889999999999
Q ss_pred CCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH---hHHHhhhCCCcCC
Q 029446 73 KLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP---MEVCEGLGLFDLK 149 (193)
Q Consensus 73 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~---~~~~~~~~~~~~~ 149 (193)
+|...+..+++.+|++++|+|+++....+....|... .. .+.|+|+|+||+|+...... +++.+.++..
T Consensus 86 dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~-~~----~~lpiIvViNKiDl~~a~~~~v~~ei~~~lg~~--- 157 (600)
T PRK05433 86 DFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLA-LE----NDLEIIPVLNKIDLPAADPERVKQEIEDVIGID--- 157 (600)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHH-HH----CCCCEEEEEECCCCCcccHHHHHHHHHHHhCCC---
Confidence 9999999999999999999999886555554443322 22 46889999999998754221 2233323221
Q ss_pred CCceEEEEeccccCCCHHHHHHHHHHHHHhh
Q 029446 150 NRKWHIQGTCALKGDGLYEGLDWLASTLKEM 180 (193)
Q Consensus 150 ~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~ 180 (193)
...++++||++|.|+++++++|.+.+..-
T Consensus 158 --~~~vi~iSAktG~GI~~Ll~~I~~~lp~P 186 (600)
T PRK05433 158 --ASDAVLVSAKTGIGIEEVLEAIVERIPPP 186 (600)
T ss_pred --cceEEEEecCCCCCHHHHHHHHHHhCccc
Confidence 12489999999999999999999887643
No 196
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.86 E-value=3.1e-20 Score=122.07 Aligned_cols=165 Identities=27% Similarity=0.326 Sum_probs=131.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCcc---ccccccceeEEE-EEE---cCEEEEEEecCCCCCC-HHhHHhhhcCCC
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHIGEVL---STVPTIGFNVEK-VQY---KNVIFTVWDVGGQEKL-RPLWRHYFNNTD 86 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~---~~~~t~~~~~~~-~~~---~~~~~~i~D~~g~~~~-~~~~~~~~~~~d 86 (193)
.+..||+|+|..++|||+++..+.-+... +..||..-.|.. +.- ....+.++||.|-..+ ..+-++|++-+|
T Consensus 7 Gk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aD 86 (198)
T KOG3883|consen 7 GKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFAD 86 (198)
T ss_pred CcceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCc
Confidence 47789999999999999999999876654 346777655543 222 3568999999997766 566788999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCCH
Q 029446 87 GLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGL 166 (193)
Q Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 166 (193)
++++||+..+++||+.+...-..+-+......+|+++.+||+|+.++ .++....+..|++...+..++++|++...+
T Consensus 87 afVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p---~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL 163 (198)
T KOG3883|consen 87 AFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEP---REVDMDVAQIWAKREKVKLWEVTAMDRPSL 163 (198)
T ss_pred eEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccc---hhcCHHHHHHHHhhhheeEEEEEeccchhh
Confidence 99999999999999999876666666666677999999999999765 444444455566677788999999999999
Q ss_pred HHHHHHHHHHHHhhhc
Q 029446 167 YEGLDWLASTLKEMRA 182 (193)
Q Consensus 167 ~~~~~~l~~~~~~~~~ 182 (193)
-+.|..+...+.+.+.
T Consensus 164 ~epf~~l~~rl~~pqs 179 (198)
T KOG3883|consen 164 YEPFTYLASRLHQPQS 179 (198)
T ss_pred hhHHHHHHHhccCCcc
Confidence 9999999988865543
No 197
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.86 E-value=5.9e-21 Score=150.95 Aligned_cols=153 Identities=18% Similarity=0.086 Sum_probs=102.1
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcC--Ccc--------------------------------ccccccceeEEEEEEc
Q 029446 14 GNSEMRVVMLGLDAAGKTTILYKLHIG--EVL--------------------------------STVPTIGFNVEKVQYK 59 (193)
Q Consensus 14 ~~~~~~v~v~G~~~~GKssli~~l~~~--~~~--------------------------------~~~~t~~~~~~~~~~~ 59 (193)
....++|+++|+.++|||||+++|+.. ... ....|.......+...
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~ 83 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD 83 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC
Confidence 356789999999999999999999752 111 0122333444556667
Q ss_pred CEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHH--HHHHHcCCCCCCCeEEEEEeCCCCCCCCC--
Q 029446 60 NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQE--FQAIIKDPFMLNSVILVFANKQDMKGAMT-- 135 (193)
Q Consensus 60 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~--~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-- 135 (193)
...+.+||+||+++|.......+..+|++++|+|+++.++. ...++ ...+.... ...|+|+|+||+|+.+...
T Consensus 84 ~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~-~~~~t~~~~~~~~~~--~~~~iIVviNK~Dl~~~~~~~ 160 (426)
T TIGR00483 84 KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFE-VQPQTREHAFLARTL--GINQLIVAINKMDSVNYDEEE 160 (426)
T ss_pred CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcc-cCCchHHHHHHHHHc--CCCeEEEEEEChhccCccHHH
Confidence 89999999999999887777778899999999999887432 11111 11222221 2357999999999975322
Q ss_pred H----hHHHhhhCCCcCCCCceEEEEeccccCCCHHHH
Q 029446 136 P----MEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEG 169 (193)
Q Consensus 136 ~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~ 169 (193)
. +++.+.+.........++++++||++|+|+++.
T Consensus 161 ~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~ 198 (426)
T TIGR00483 161 FEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKK 198 (426)
T ss_pred HHHHHHHHHHHHHHcCCCcccceEEEeecccccccccc
Confidence 1 122222211112223468999999999999863
No 198
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.85 E-value=1.2e-20 Score=153.63 Aligned_cols=139 Identities=19% Similarity=0.201 Sum_probs=99.0
Q ss_pred cCCCCCHHHHHHHHhcCCcc-ccccccc--eeEEEEEEcCEEEEEEecCCCCCCHHh------HHhhh--cCCCEEEEEE
Q 029446 24 GLDAAGKTTILYKLHIGEVL-STVPTIG--FNVEKVQYKNVIFTVWDVGGQEKLRPL------WRHYF--NNTDGLIYVV 92 (193)
Q Consensus 24 G~~~~GKssli~~l~~~~~~-~~~~t~~--~~~~~~~~~~~~~~i~D~~g~~~~~~~------~~~~~--~~~d~~i~v~ 92 (193)
|++|+|||||+|++.+.... .+.++.. .....+.+++.++.+|||||+.++... .+.++ +++|++++|+
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~Vv 80 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNVV 80 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEEe
Confidence 89999999999999987653 3333333 333456667788999999998876542 33333 3799999999
Q ss_pred ECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH----hHHHhhhCCCcCCCCceEEEEeccccCCCHHH
Q 029446 93 DSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP----MEVCEGLGLFDLKNRKWHIQGTCALKGDGLYE 168 (193)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 168 (193)
|+++.+. ...+..++.+ .+.|+++|+||+|+.+.... +++.+. .+++++++||++|+|+++
T Consensus 81 Dat~ler---~l~l~~ql~~----~~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~--------lg~pvv~tSA~tg~Gi~e 145 (591)
T TIGR00437 81 DASNLER---NLYLTLQLLE----LGIPMILALNLVDEAEKKGIRIDEEKLEER--------LGVPVVPTSATEGRGIER 145 (591)
T ss_pred cCCcchh---hHHHHHHHHh----cCCCEEEEEehhHHHHhCCChhhHHHHHHH--------cCCCEEEEECCCCCCHHH
Confidence 9987543 2333333332 46899999999998654322 222332 345899999999999999
Q ss_pred HHHHHHHHH
Q 029446 169 GLDWLASTL 177 (193)
Q Consensus 169 ~~~~l~~~~ 177 (193)
+++.+.+..
T Consensus 146 L~~~i~~~~ 154 (591)
T TIGR00437 146 LKDAIRKAI 154 (591)
T ss_pred HHHHHHHHh
Confidence 999998754
No 199
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.85 E-value=3.3e-20 Score=154.46 Aligned_cols=151 Identities=19% Similarity=0.159 Sum_probs=105.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCcc-cc--ccccceeEEEEEEcCEEEEEEecCCCCCCHHh----------HHhhh
Q 029446 16 SEMRVVMLGLDAAGKTTILYKLHIGEVL-ST--VPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPL----------WRHYF 82 (193)
Q Consensus 16 ~~~~v~v~G~~~~GKssli~~l~~~~~~-~~--~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~----------~~~~~ 82 (193)
+.++|+++|++|+|||||+|++++.... .+ +.|+......+.+.+..+.+||+||..++... ...++
T Consensus 2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l 81 (772)
T PRK09554 2 KKLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI 81 (772)
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHHH
Confidence 4579999999999999999999987653 11 23333334455667889999999997765321 22232
Q ss_pred --cCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEecc
Q 029446 83 --NNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCA 160 (193)
Q Consensus 83 --~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (193)
+.+|++++|+|+++.+.. ..++.++.+ .+.|+++|+||+|+.+........+.+. +..+++++++||
T Consensus 82 ~~~~aD~vI~VvDat~ler~---l~l~~ql~e----~giPvIvVlNK~Dl~~~~~i~id~~~L~----~~LG~pVvpiSA 150 (772)
T PRK09554 82 LSGDADLLINVVDASNLERN---LYLTLQLLE----LGIPCIVALNMLDIAEKQNIRIDIDALS----ARLGCPVIPLVS 150 (772)
T ss_pred hccCCCEEEEEecCCcchhh---HHHHHHHHH----cCCCEEEEEEchhhhhccCcHHHHHHHH----HHhCCCEEEEEe
Confidence 479999999999876543 234444433 4789999999999875432221112111 234558999999
Q ss_pred ccCCCHHHHHHHHHHHH
Q 029446 161 LKGDGLYEGLDWLASTL 177 (193)
Q Consensus 161 ~~~~gi~~~~~~l~~~~ 177 (193)
++++|++++.+.+.+..
T Consensus 151 ~~g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 151 TRGRGIEALKLAIDRHQ 167 (772)
T ss_pred ecCCCHHHHHHHHHHhh
Confidence 99999999999988765
No 200
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=6e-21 Score=129.73 Aligned_cols=157 Identities=22% Similarity=0.317 Sum_probs=134.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEEEEEE----cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEE
Q 029446 16 SEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVEKVQY----KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIY 90 (193)
Q Consensus 16 ~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~~~~----~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 90 (193)
-.++.+++|..|.||||++++...+.+. .+.+|+|+....... +.+++..|||.|++.+..+...++-+..++++
T Consensus 9 ~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAii 88 (216)
T KOG0096|consen 9 LTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAII 88 (216)
T ss_pred ceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeEE
Confidence 4789999999999999999999999998 467999998876554 35899999999999999999999899999999
Q ss_pred EEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHH
Q 029446 91 VVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGL 170 (193)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~ 170 (193)
+||++..-++.++..|..++.... .++|+++++||.|..... .+.......+..++.+++.||+++.|.+.-|
T Consensus 89 mFdVtsr~t~~n~~rwhrd~~rv~--~NiPiv~cGNKvDi~~r~-----~k~k~v~~~rkknl~y~~iSaksn~NfekPF 161 (216)
T KOG0096|consen 89 MFDVTSRFTYKNVPRWHRDLVRVR--ENIPIVLCGNKVDIKARK-----VKAKPVSFHRKKNLQYYEISAKSNYNFERPF 161 (216)
T ss_pred EeeeeehhhhhcchHHHHHHHHHh--cCCCeeeeccceeccccc-----cccccceeeecccceeEEeecccccccccch
Confidence 999999999999999999998754 579999999999976652 2222333346677799999999999999999
Q ss_pred HHHHHHHHh
Q 029446 171 DWLASTLKE 179 (193)
Q Consensus 171 ~~l~~~~~~ 179 (193)
-|+.+++..
T Consensus 162 l~LarKl~G 170 (216)
T KOG0096|consen 162 LWLARKLTG 170 (216)
T ss_pred HHHhhhhcC
Confidence 999988753
No 201
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.85 E-value=8.3e-20 Score=133.51 Aligned_cols=155 Identities=25% Similarity=0.246 Sum_probs=110.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCc--------------ccc-------ccccceeEEEEEEcCEEEEEEecCCCCCCHHh
Q 029446 19 RVVMLGLDAAGKTTILYKLHIGEV--------------LST-------VPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPL 77 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~~~~--------------~~~-------~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~ 77 (193)
+|+++|+.|+|||||+++++...- .++ ..+.......+.+.+.++.+|||||+.+|...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 589999999999999999975311 010 11233445567778999999999999999999
Q ss_pred HHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC---CHhHHHhhhCC---------
Q 029446 78 WRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM---TPMEVCEGLGL--------- 145 (193)
Q Consensus 78 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~---~~~~~~~~~~~--------- 145 (193)
+..+++.+|++++|+|+++.... ....++..+.. .++|+++++||+|+.... ..+++...++.
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~----~~~P~iivvNK~D~~~a~~~~~~~~i~~~~~~~~~~~~~p~ 155 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQA-QTRILWRLLRK----LNIPTIIFVNKIDRAGADLEKVYQEIKEKLSSDIVPMQKVG 155 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHH----cCCCEEEEEECccccCCCHHHHHHHHHHHHCCCeEEEECCc
Confidence 99999999999999999876433 22344444332 478999999999987421 01111111110
Q ss_pred -----------------------------------------------CcCCCCceEEEEeccccCCCHHHHHHHHHHHHH
Q 029446 146 -----------------------------------------------FDLKNRKWHIQGTCALKGDGLYEGLDWLASTLK 178 (193)
Q Consensus 146 -----------------------------------------------~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~ 178 (193)
......-+|++..||.++.|++.+++.|.+.++
T Consensus 156 ~~~~~~~~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~~~~~Pv~~gsa~~~~Gv~~ll~~~~~~~p 235 (237)
T cd04168 156 LAPNICETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKRKVFPVYHGSALKGIGIEELLEGITKLFP 235 (237)
T ss_pred EeeeeeeeeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCeEEEEEccccCCcCHHHHHHHHHHhcC
Confidence 001223478999999999999999999988763
No 202
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.85 E-value=6e-20 Score=148.76 Aligned_cols=155 Identities=23% Similarity=0.180 Sum_probs=106.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCcccc-----ccccceeEEEEEE----------------cCEEEEEEecCCCCCC
Q 029446 16 SEMRVVMLGLDAAGKTTILYKLHIGEVLST-----VPTIGFNVEKVQY----------------KNVIFTVWDVGGQEKL 74 (193)
Q Consensus 16 ~~~~v~v~G~~~~GKssli~~l~~~~~~~~-----~~t~~~~~~~~~~----------------~~~~~~i~D~~g~~~~ 74 (193)
+..-|+++|++++|||||+|++.+..+... ..+.+........ ....+.+|||||++.|
T Consensus 3 r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f 82 (590)
T TIGR00491 3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAF 82 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhH
Confidence 567899999999999999999998766432 2233333322211 1124889999999999
Q ss_pred HHhHHhhhcCCCEEEEEEECCC---hhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--------------CHh
Q 029446 75 RPLWRHYFNNTDGLIYVVDSLD---RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--------------TPM 137 (193)
Q Consensus 75 ~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--------------~~~ 137 (193)
...+..+++.+|++++|+|+++ +++++.+. .+ .. .+.|+|+++||+|+.+.. ...
T Consensus 83 ~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~----~l-~~---~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~ 154 (590)
T TIGR00491 83 TNLRKRGGALADLAILIVDINEGFKPQTQEALN----IL-RM---YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEI 154 (590)
T ss_pred HHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHH----HH-HH---cCCCEEEEEECCCccchhhhccCchHHHHHHhhhH
Confidence 9999989999999999999986 44444332 11 21 468999999999987421 001
Q ss_pred HHH--------------hhhCCCc-------CCCCceEEEEeccccCCCHHHHHHHHHHHHH
Q 029446 138 EVC--------------EGLGLFD-------LKNRKWHIQGTCALKGDGLYEGLDWLASTLK 178 (193)
Q Consensus 138 ~~~--------------~~~~~~~-------~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~ 178 (193)
.+. .+.+... --...++++++||++|+|++++..+|.....
T Consensus 155 ~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~~ 216 (590)
T TIGR00491 155 QVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLAQ 216 (590)
T ss_pred HHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHHH
Confidence 110 1111110 0123578999999999999999998876443
No 203
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.84 E-value=3e-20 Score=145.86 Aligned_cols=161 Identities=18% Similarity=0.108 Sum_probs=104.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCcccc------ccccceeEEEE--------------------EE------cCEE
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHIGEVLST------VPTIGFNVEKV--------------------QY------KNVI 62 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~~~------~~t~~~~~~~~--------------------~~------~~~~ 62 (193)
+..++|+++|++++|||||+++|.+.....+ ..|....+... .. ....
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR 81 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence 4678999999999999999999976422111 11222211110 00 1467
Q ss_pred EEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhh
Q 029446 63 FTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEG 142 (193)
Q Consensus 63 ~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~ 142 (193)
+.+||+||+++|...+......+|++++|+|+++..........+..+ ... ...|+++++||+|+.+.....+..++
T Consensus 82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l-~~~--gi~~iIVvvNK~Dl~~~~~~~~~~~~ 158 (406)
T TIGR03680 82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMAL-EII--GIKNIVIVQNKIDLVSKEKALENYEE 158 (406)
T ss_pred EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHH-HHc--CCCeEEEEEEccccCCHHHHHHHHHH
Confidence 999999999999988888888999999999998643111111222211 211 23578999999999864322111111
Q ss_pred hCCC--cCCCCceEEEEeccccCCCHHHHHHHHHHHHH
Q 029446 143 LGLF--DLKNRKWHIQGTCALKGDGLYEGLDWLASTLK 178 (193)
Q Consensus 143 ~~~~--~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~ 178 (193)
+... .....+++++++||++|+|+++++++|...+.
T Consensus 159 i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 159 IKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIP 196 (406)
T ss_pred HHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence 1100 00123568999999999999999999998764
No 204
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.84 E-value=5.5e-20 Score=149.52 Aligned_cols=157 Identities=17% Similarity=0.181 Sum_probs=114.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhc--CCcccc-----------------ccccceeEEEEEEcCEEEEEEecCCCCCCHHhHH
Q 029446 19 RVVMLGLDAAGKTTILYKLHI--GEVLST-----------------VPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWR 79 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~--~~~~~~-----------------~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~ 79 (193)
+|+++|+.++|||||+++|+. +.+... ..|+......+.+++..+.+|||||+.+|...+.
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~ 82 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVE 82 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHH
Confidence 689999999999999999985 222111 2333344456778899999999999999999999
Q ss_pred hhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC---HhHHHhhhCCCcC--CCCceE
Q 029446 80 HYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT---PMEVCEGLGLFDL--KNRKWH 154 (193)
Q Consensus 80 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~---~~~~~~~~~~~~~--~~~~~~ 154 (193)
.+++.+|++++|+|+.+.. ......++..+.. .++|+|+|+||+|+..... ..++...+..... ....++
T Consensus 83 ~~l~~aD~alLVVDa~~G~-~~qT~~~l~~a~~----~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~p 157 (594)
T TIGR01394 83 RVLGMVDGVLLLVDASEGP-MPQTRFVLKKALE----LGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDFP 157 (594)
T ss_pred HHHHhCCEEEEEEeCCCCC-cHHHHHHHHHHHH----CCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccCc
Confidence 9999999999999998642 2333455555543 4688999999999865421 1222222211111 234678
Q ss_pred EEEeccccCC----------CHHHHHHHHHHHHHhh
Q 029446 155 IQGTCALKGD----------GLYEGLDWLASTLKEM 180 (193)
Q Consensus 155 ~~~~Sa~~~~----------gi~~~~~~l~~~~~~~ 180 (193)
++.+||++|. |++.+++.|.+.+..-
T Consensus 158 vl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P 193 (594)
T TIGR01394 158 IVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAP 193 (594)
T ss_pred EEechhhcCcccccCcccccCHHHHHHHHHHhCCCC
Confidence 9999999996 7999999999888643
No 205
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.84 E-value=3.6e-20 Score=133.35 Aligned_cols=147 Identities=18% Similarity=0.089 Sum_probs=93.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCcc-c---------------------------------cccccceeEEEEEEcCEEEE
Q 029446 19 RVVMLGLDAAGKTTILYKLHIGEVL-S---------------------------------TVPTIGFNVEKVQYKNVIFT 64 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~~~~~-~---------------------------------~~~t~~~~~~~~~~~~~~~~ 64 (193)
+|+++|++|+|||||+++|+...-. . ...|.......+.+.+.++.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 5899999999999999999753211 0 11233333445556788999
Q ss_pred EEecCCCCCCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhh
Q 029446 65 VWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT--PMEVCEG 142 (193)
Q Consensus 65 i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~ 142 (193)
+|||||+.++.......++.+|++++|+|++++..-+. .....+.... ...++|+|+||+|+.+... ..++...
T Consensus 81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~--~~~~~~~~~~--~~~~iIvviNK~D~~~~~~~~~~~i~~~ 156 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQT--RRHSYILSLL--GIRHVVVAVNKMDLVDYSEEVFEEIVAD 156 (208)
T ss_pred EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhH--HHHHHHHHHc--CCCcEEEEEEchhcccCCHHHHHHHHHH
Confidence 99999998887777777899999999999986532111 1112222221 1245788999999875321 1112111
Q ss_pred hCC--CcCCCCceEEEEeccccCCCHHHH
Q 029446 143 LGL--FDLKNRKWHIQGTCALKGDGLYEG 169 (193)
Q Consensus 143 ~~~--~~~~~~~~~~~~~Sa~~~~gi~~~ 169 (193)
+.. ..+.....+++++||+++.|+++.
T Consensus 157 ~~~~~~~~~~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 157 YLAFAAKLGIEDITFIPISALDGDNVVSR 185 (208)
T ss_pred HHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence 110 001112346999999999998753
No 206
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.84 E-value=7.7e-20 Score=126.82 Aligned_cols=164 Identities=19% Similarity=0.206 Sum_probs=112.3
Q ss_pred hhhhcCCCccEEEEEcCCCCCHHHHHHHHhcCC-ccccccccceeEEEEEEcC-EEEEEEecCC----------CCCCHH
Q 029446 9 FDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGE-VLSTVPTIGFNVEKVQYKN-VIFTVWDVGG----------QEKLRP 76 (193)
Q Consensus 9 ~~~~~~~~~~~v~v~G~~~~GKssli~~l~~~~-~~~~~~t~~~~~~~~~~~~-~~~~i~D~~g----------~~~~~~ 76 (193)
++..+.+...-|+++|.+|+|||||||++++.. ...++.|.|.+...--+.- -.+.++|.|| ++.+..
T Consensus 16 ~~~~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~~~lVDlPGYGyAkv~k~~~e~w~~ 95 (200)
T COG0218 16 IKQYPEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDELRLVDLPGYGYAKVPKEVKEKWKK 95 (200)
T ss_pred HhhCCCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCcEEEEeCCCcccccCCHHHHHHHHH
Confidence 345667788899999999999999999999966 3344555554433222211 1289999999 344555
Q ss_pred hHHhhhc---CCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH----hHHHhhhCCCcCC
Q 029446 77 LWRHYFN---NTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP----MEVCEGLGLFDLK 149 (193)
Q Consensus 77 ~~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~----~~~~~~~~~~~~~ 149 (193)
....|++ +..++++++|+..+- ......+.+++.. .++|+++++||+|..+..+. ..+.+.+.....
T Consensus 96 ~i~~YL~~R~~L~~vvlliD~r~~~--~~~D~em~~~l~~---~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~- 169 (200)
T COG0218 96 LIEEYLEKRANLKGVVLLIDARHPP--KDLDREMIEFLLE---LGIPVIVVLTKADKLKKSERNKQLNKVAEELKKPPP- 169 (200)
T ss_pred HHHHHHhhchhheEEEEEEECCCCC--cHHHHHHHHHHHH---cCCCeEEEEEccccCChhHHHHHHHHHHHHhcCCCC-
Confidence 5566665 368889999996543 3333445555544 58999999999999886444 234444433211
Q ss_pred CCceEEEEeccccCCCHHHHHHHHHHHHHh
Q 029446 150 NRKWHIQGTCALKGDGLYEGLDWLASTLKE 179 (193)
Q Consensus 150 ~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~ 179 (193)
....++.+|+.++.|++++.+.|.+.+..
T Consensus 170 -~~~~~~~~ss~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 170 -DDQWVVLFSSLKKKGIDELKAKILEWLKE 198 (200)
T ss_pred -ccceEEEEecccccCHHHHHHHHHHHhhc
Confidence 11128889999999999999999887753
No 207
>PRK10218 GTP-binding protein; Provisional
Probab=99.84 E-value=1.4e-19 Score=146.98 Aligned_cols=160 Identities=18% Similarity=0.183 Sum_probs=113.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhc--CCcccc-------------ccccceeE----EEEEEcCEEEEEEecCCCCCCHH
Q 029446 16 SEMRVVMLGLDAAGKTTILYKLHI--GEVLST-------------VPTIGFNV----EKVQYKNVIFTVWDVGGQEKLRP 76 (193)
Q Consensus 16 ~~~~v~v~G~~~~GKssli~~l~~--~~~~~~-------------~~t~~~~~----~~~~~~~~~~~i~D~~g~~~~~~ 76 (193)
.--+|+++|+.++|||||+++|.. +.+... ..+.++++ ..+.+++..+.+|||||+..|..
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~ 83 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG 83 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence 345899999999999999999986 333211 12334333 34566789999999999999999
Q ss_pred hHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH---hHHHhhhCCCcC--CCC
Q 029446 77 LWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP---MEVCEGLGLFDL--KNR 151 (193)
Q Consensus 77 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~---~~~~~~~~~~~~--~~~ 151 (193)
.+..+++.+|++++|+|+.+....+ ....+..... .++|.|+++||+|+...... +++...+..... ...
T Consensus 84 ~v~~~l~~aDg~ILVVDa~~G~~~q-t~~~l~~a~~----~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~ 158 (607)
T PRK10218 84 EVERVMSMVDSVLLVVDAFDGPMPQ-TRFVTKKAFA----YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQL 158 (607)
T ss_pred HHHHHHHhCCEEEEEEecccCccHH-HHHHHHHHHH----cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCcccccc
Confidence 9999999999999999998653222 2233333333 46889999999998764322 233333321111 234
Q ss_pred ceEEEEeccccCC----------CHHHHHHHHHHHHHhh
Q 029446 152 KWHIQGTCALKGD----------GLYEGLDWLASTLKEM 180 (193)
Q Consensus 152 ~~~~~~~Sa~~~~----------gi~~~~~~l~~~~~~~ 180 (193)
.+|++.+||++|. |+..+++.|.+.+..-
T Consensus 159 ~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P 197 (607)
T PRK10218 159 DFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAP 197 (607)
T ss_pred CCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCC
Confidence 6789999999998 5888888888887643
No 208
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.83 E-value=1.5e-19 Score=139.17 Aligned_cols=151 Identities=17% Similarity=0.182 Sum_probs=111.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc----cccccceeEEEEEEcCEEEEEEecCCCCCCHH--------hHHhhhc
Q 029446 16 SEMRVVMLGLDAAGKTTILYKLHIGEVLS----TVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRP--------LWRHYFN 83 (193)
Q Consensus 16 ~~~~v~v~G~~~~GKssli~~l~~~~~~~----~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~~~~~~ 83 (193)
.-++++++|.||+|||||+|.|.+..... .++|.++-...++.+++.+.+.||+|--+-.. .....++
T Consensus 216 ~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~i~ 295 (454)
T COG0486 216 EGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKKAIE 295 (454)
T ss_pred cCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHHHHHH
Confidence 55899999999999999999999988652 24666677778889999999999999332211 1234457
Q ss_pred CCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccC
Q 029446 84 NTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKG 163 (193)
Q Consensus 84 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (193)
.+|.+++|+|++.+.+-.. ...... ...++|+++|.||.|+......... + . ..+.+++.+|++++
T Consensus 296 ~ADlvL~v~D~~~~~~~~d--~~~~~~----~~~~~~~i~v~NK~DL~~~~~~~~~-~-~------~~~~~~i~iSa~t~ 361 (454)
T COG0486 296 EADLVLFVLDASQPLDKED--LALIEL----LPKKKPIIVVLNKADLVSKIELESE-K-L------ANGDAIISISAKTG 361 (454)
T ss_pred hCCEEEEEEeCCCCCchhh--HHHHHh----cccCCCEEEEEechhcccccccchh-h-c------cCCCceEEEEecCc
Confidence 8999999999998522111 111111 2257899999999999987553333 1 1 11226899999999
Q ss_pred CCHHHHHHHHHHHHHhh
Q 029446 164 DGLYEGLDWLASTLKEM 180 (193)
Q Consensus 164 ~gi~~~~~~l~~~~~~~ 180 (193)
+|++++.+.|.+.+...
T Consensus 362 ~Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 362 EGLDALREAIKQLFGKG 378 (454)
T ss_pred cCHHHHHHHHHHHHhhc
Confidence 99999999999988665
No 209
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.83 E-value=1.1e-19 Score=142.64 Aligned_cols=160 Identities=18% Similarity=0.077 Sum_probs=103.4
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc------cccccceeEEEEEE--------------------------cCE
Q 029446 14 GNSEMRVVMLGLDAAGKTTILYKLHIGEVLS------TVPTIGFNVEKVQY--------------------------KNV 61 (193)
Q Consensus 14 ~~~~~~v~v~G~~~~GKssli~~l~~~~~~~------~~~t~~~~~~~~~~--------------------------~~~ 61 (193)
+...++|+++|+.++|||||+.+|.+..... ...|....+....+ ...
T Consensus 6 ~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (411)
T PRK04000 6 VQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLR 85 (411)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccccccc
Confidence 3467999999999999999999996532111 12233222211110 026
Q ss_pred EEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCChh-hHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHh---
Q 029446 62 IFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE-RIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPM--- 137 (193)
Q Consensus 62 ~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~--- 137 (193)
.+.+|||||+++|..........+|++++|+|++++. .-+. ...+..+ ... ...|+++|+||+|+.+.....
T Consensus 86 ~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t-~~~l~~l-~~~--~i~~iiVVlNK~Dl~~~~~~~~~~ 161 (411)
T PRK04000 86 RVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQT-KEHLMAL-DII--GIKNIVIVQNKIDLVSKERALENY 161 (411)
T ss_pred EEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhH-HHHHHHH-HHc--CCCcEEEEEEeeccccchhHHHHH
Confidence 7999999999988777766667889999999998642 1111 1111111 111 234689999999998653322
Q ss_pred -HHHhhhCCCcCCCCceEEEEeccccCCCHHHHHHHHHHHHHh
Q 029446 138 -EVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKE 179 (193)
Q Consensus 138 -~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~ 179 (193)
++...+.. ....+++++++||++++|++++++.|.+.+..
T Consensus 162 ~~i~~~l~~--~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~ 202 (411)
T PRK04000 162 EQIKEFVKG--TVAENAPIIPVSALHKVNIDALIEAIEEEIPT 202 (411)
T ss_pred HHHHHHhcc--ccCCCCeEEEEECCCCcCHHHHHHHHHHhCCC
Confidence 12221111 01235689999999999999999999987653
No 210
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.83 E-value=3.9e-19 Score=144.52 Aligned_cols=155 Identities=25% Similarity=0.194 Sum_probs=104.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccccc-----cccceeEEEEEE------cC-----E-----EEEEEecCCCCC
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHIGEVLSTV-----PTIGFNVEKVQY------KN-----V-----IFTVWDVGGQEK 73 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~~~~-----~t~~~~~~~~~~------~~-----~-----~~~i~D~~g~~~ 73 (193)
.+++.|+++|++++|||||++++.+....... .+.|.++..... .. . .+.+|||||++.
T Consensus 4 ~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~ 83 (586)
T PRK04004 4 LRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEA 83 (586)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHH
Confidence 46788999999999999999999876543221 233433322211 00 1 278999999999
Q ss_pred CHHhHHhhhcCCCEEEEEEECCC---hhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--------------H
Q 029446 74 LRPLWRHYFNNTDGLIYVVDSLD---RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT--------------P 136 (193)
Q Consensus 74 ~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--------------~ 136 (193)
|...+...+..+|++++|+|+++ +++++.+. . ... .+.|+++++||+|+.+... .
T Consensus 84 f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~----~-~~~---~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~ 155 (586)
T PRK04004 84 FTNLRKRGGALADIAILVVDINEGFQPQTIEAIN----I-LKR---RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQS 155 (586)
T ss_pred HHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHH----H-HHH---cCCCEEEEEECcCCchhhhhhcCchHHHHHhhhh
Confidence 99988888899999999999987 45544432 1 121 4789999999999853100 0
Q ss_pred h-----------HHHhhhCCCcC----------CCCceEEEEeccccCCCHHHHHHHHHHHH
Q 029446 137 M-----------EVCEGLGLFDL----------KNRKWHIQGTCALKGDGLYEGLDWLASTL 177 (193)
Q Consensus 137 ~-----------~~~~~~~~~~~----------~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~ 177 (193)
. ++...+....+ -...++++++||.+|+|++++++.+...+
T Consensus 156 ~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~ 217 (586)
T PRK04004 156 QRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLA 217 (586)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHH
Confidence 0 01111111100 12457899999999999999999887544
No 211
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.83 E-value=2.5e-19 Score=137.64 Aligned_cols=159 Identities=16% Similarity=0.125 Sum_probs=114.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCcccc----ccccceeEEEEEEcCEEEEEEecCCCC----------CCHH-hHHh
Q 029446 16 SEMRVVMLGLDAAGKTTILYKLHIGEVLST----VPTIGFNVEKVQYKNVIFTVWDVGGQE----------KLRP-LWRH 80 (193)
Q Consensus 16 ~~~~v~v~G~~~~GKssli~~l~~~~~~~~----~~t~~~~~~~~~~~~~~~~i~D~~g~~----------~~~~-~~~~ 80 (193)
..++|+++|.||+|||||+|++.+.+..-. +.|.+.-...+.+++..+.+.||+|.. .|.. ....
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~ 256 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLK 256 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhHh
Confidence 459999999999999999999999887643 344444455667789999999999922 2211 1234
Q ss_pred hhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCcCCCCceEEEEe
Q 029446 81 YFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA--MTPMEVCEGLGLFDLKNRKWHIQGT 158 (193)
Q Consensus 81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (193)
.+..+|++++|+|++.+-+ +....+..++.. .+.++++|+||.|+.+. ...++..+.+....-.-...+++.+
T Consensus 257 aI~~a~vvllviDa~~~~~--~qD~~ia~~i~~---~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~i 331 (444)
T COG1160 257 AIERADVVLLVIDATEGIS--EQDLRIAGLIEE---AGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFI 331 (444)
T ss_pred HHhhcCEEEEEEECCCCch--HHHHHHHHHHHH---cCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEE
Confidence 5578999999999976543 443444444433 67889999999999886 3334444444432223345589999
Q ss_pred ccccCCCHHHHHHHHHHHHHh
Q 029446 159 CALKGDGLYEGLDWLASTLKE 179 (193)
Q Consensus 159 Sa~~~~gi~~~~~~l~~~~~~ 179 (193)
||+++.|++++++.+.+....
T Consensus 332 SA~~~~~i~~l~~~i~~~~~~ 352 (444)
T COG1160 332 SALTGQGLDKLFEAIKEIYEC 352 (444)
T ss_pred EecCCCChHHHHHHHHHHHHH
Confidence 999999999999988776543
No 212
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.83 E-value=5.5e-20 Score=133.33 Aligned_cols=146 Identities=22% Similarity=0.201 Sum_probs=95.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC---------------------------ccc-------cccccceeEEEEEEcCEEEE
Q 029446 19 RVVMLGLDAAGKTTILYKLHIGE---------------------------VLS-------TVPTIGFNVEKVQYKNVIFT 64 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~~~---------------------------~~~-------~~~t~~~~~~~~~~~~~~~~ 64 (193)
+|+++|+.++|||||+.+|+... ..+ ...|.......+.+.+..+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 58999999999999999995311 000 12233344455667889999
Q ss_pred EEecCCCCCCHHhHHhhhcCCCEEEEEEECCChhh---HH---HHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC----C
Q 029446 65 VWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRER---IG---KAKQEFQAIIKDPFMLNSVILVFANKQDMKGA----M 134 (193)
Q Consensus 65 i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~----~ 134 (193)
+|||||+..+...+...++.+|++++|+|+++... +. .....+... .. ....|+|+++||+|+... .
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~iiivvNK~Dl~~~~~~~~ 157 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLA-RT--LGVKQLIVAVNKMDDVTVNWSEE 157 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHH-HH--cCCCeEEEEEEccccccccccHH
Confidence 99999998887777777788999999999987420 11 111112221 21 123689999999999842 1
Q ss_pred CHhHHHhh----hCCCcCCCCceEEEEeccccCCCHH
Q 029446 135 TPMEVCEG----LGLFDLKNRKWHIQGTCALKGDGLY 167 (193)
Q Consensus 135 ~~~~~~~~----~~~~~~~~~~~~~~~~Sa~~~~gi~ 167 (193)
...++.+. +.........++++++||++|+|++
T Consensus 158 ~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 158 RYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred HHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 12222222 2221123346789999999999987
No 213
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.82 E-value=1.8e-19 Score=127.99 Aligned_cols=145 Identities=22% Similarity=0.157 Sum_probs=95.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCc------------c-------ccccccceeEEEEEEcCEEEEEEecCCCCCCHHh
Q 029446 17 EMRVVMLGLDAAGKTTILYKLHIGEV------------L-------STVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPL 77 (193)
Q Consensus 17 ~~~v~v~G~~~~GKssli~~l~~~~~------------~-------~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~ 77 (193)
.++|+++|+.++|||||+++|+.... . ....|.......+..++.++.++||||+..+...
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~ 81 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN 81 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence 47899999999999999999975310 0 0112223333344456789999999999988888
Q ss_pred HHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCe-EEEEEeCCCCCCCCCH-h----HHHhhhCCCcCCCC
Q 029446 78 WRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSV-ILVFANKQDMKGAMTP-M----EVCEGLGLFDLKNR 151 (193)
Q Consensus 78 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~-~----~~~~~~~~~~~~~~ 151 (193)
....+..+|++++|+|+.....-+ ....+..+ .. .+.| +|+++||+|+...... + ++...+........
T Consensus 82 ~~~~~~~~D~~ilVvda~~g~~~~-~~~~~~~~-~~---~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~ 156 (195)
T cd01884 82 MITGAAQMDGAILVVSATDGPMPQ-TREHLLLA-RQ---VGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGD 156 (195)
T ss_pred HHHHhhhCCEEEEEEECCCCCcHH-HHHHHHHH-HH---cCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhccccc
Confidence 888889999999999997642211 11222222 22 3455 7899999998743221 1 22222222112234
Q ss_pred ceEEEEeccccCCCH
Q 029446 152 KWHIQGTCALKGDGL 166 (193)
Q Consensus 152 ~~~~~~~Sa~~~~gi 166 (193)
+++++++||.+|.|+
T Consensus 157 ~v~iipiSa~~g~n~ 171 (195)
T cd01884 157 NTPIVRGSALKALEG 171 (195)
T ss_pred CCeEEEeeCccccCC
Confidence 679999999999985
No 214
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.82 E-value=2.1e-19 Score=131.69 Aligned_cols=152 Identities=24% Similarity=0.276 Sum_probs=113.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcc--cc-ccccceeEEEEEEcC-EEEEEEecCCCCC-------CHHhHHhhhcCCC
Q 029446 18 MRVVMLGLDAAGKTTILYKLHIGEVL--ST-VPTIGFNVEKVQYKN-VIFTVWDVGGQEK-------LRPLWRHYFNNTD 86 (193)
Q Consensus 18 ~~v~v~G~~~~GKssli~~l~~~~~~--~~-~~t~~~~~~~~~~~~-~~~~i~D~~g~~~-------~~~~~~~~~~~~d 86 (193)
..|.++|.||+|||||+|.++..... +| .+|+..++.++.+++ .++.+-|.||--+ .-...-..++.|+
T Consensus 197 advGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~~ 276 (366)
T KOG1489|consen 197 ADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIERCK 276 (366)
T ss_pred cccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccceeEeccCccccccccccCcccHHHHHHHHhhc
Confidence 46889999999999999999987654 44 467777777887754 4599999999222 1112223357899
Q ss_pred EEEEEEECCCh---hhHHHHHHHHHHHHc-CCCCCCCeEEEEEeCCCCCCCCCH--hHHHhhhCCCcCCCCceEEEEecc
Q 029446 87 GLIYVVDSLDR---ERIGKAKQEFQAIIK-DPFMLNSVILVFANKQDMKGAMTP--MEVCEGLGLFDLKNRKWHIQGTCA 160 (193)
Q Consensus 87 ~~i~v~d~~~~---~s~~~~~~~~~~~~~-~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa 160 (193)
.++||+|++.. ..|+.+...+.++-. +....+.|.++|+||+|+.+.+.. .++.+.+... .++++||
T Consensus 277 ~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~~~l~~L~~~lq~~-------~V~pvsA 349 (366)
T KOG1489|consen 277 GLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEKNLLSSLAKRLQNP-------HVVPVSA 349 (366)
T ss_pred eEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHHHHHHHHHHHcCCC-------cEEEeee
Confidence 99999999987 788888776666644 345678999999999998643222 4455554421 5999999
Q ss_pred ccCCCHHHHHHHHHHH
Q 029446 161 LKGDGLYEGLDWLAST 176 (193)
Q Consensus 161 ~~~~gi~~~~~~l~~~ 176 (193)
++++|+.++++.|.+.
T Consensus 350 ~~~egl~~ll~~lr~~ 365 (366)
T KOG1489|consen 350 KSGEGLEELLNGLREL 365 (366)
T ss_pred ccccchHHHHHHHhhc
Confidence 9999999999887654
No 215
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.82 E-value=2.9e-19 Score=124.08 Aligned_cols=153 Identities=20% Similarity=0.161 Sum_probs=95.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEEE--EEEcCEEEEEEecCCCCC----------CHHhHHhhhc--
Q 029446 19 RVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVEK--VQYKNVIFTVWDVGGQEK----------LRPLWRHYFN-- 83 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~--~~~~~~~~~i~D~~g~~~----------~~~~~~~~~~-- 83 (193)
.|+++|.+|+|||||++.+.+.... ...++.+.+... +... ..+.+||+||... +......++.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVN-DKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENR 79 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEcc-CeEEEecCCCccccccCHHHHHHHHHHHHHHHHhC
Confidence 4799999999999999999954443 344444443322 2222 3899999999543 2333333333
Q ss_pred -CCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcC-CCCceEEEEeccc
Q 029446 84 -NTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDL-KNRKWHIQGTCAL 161 (193)
Q Consensus 84 -~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~ 161 (193)
+++++++++|..+..+.... .+...+.. .+.|+++++||+|+.................. .....+++++||+
T Consensus 80 ~~~~~~~~v~d~~~~~~~~~~--~~~~~l~~---~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sa~ 154 (170)
T cd01876 80 ENLKGVVLLIDSRHGPTEIDL--EMLDWLEE---LGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFSSL 154 (170)
T ss_pred hhhhEEEEEEEcCcCCCHhHH--HHHHHHHH---cCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEEecC
Confidence 46789999999765322211 11222222 25789999999998654332222222211000 1334579999999
Q ss_pred cCCCHHHHHHHHHHHH
Q 029446 162 KGDGLYEGLDWLASTL 177 (193)
Q Consensus 162 ~~~gi~~~~~~l~~~~ 177 (193)
++.|+++++++|.+.+
T Consensus 155 ~~~~~~~l~~~l~~~~ 170 (170)
T cd01876 155 KGQGIDELRALIEKWL 170 (170)
T ss_pred CCCCHHHHHHHHHHhC
Confidence 9999999999998753
No 216
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.82 E-value=1.6e-19 Score=147.45 Aligned_cols=154 Identities=19% Similarity=0.117 Sum_probs=105.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC---cc-c--cccccceeEEEEEE-cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEE
Q 029446 18 MRVVMLGLDAAGKTTILYKLHIGE---VL-S--TVPTIGFNVEKVQY-KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIY 90 (193)
Q Consensus 18 ~~v~v~G~~~~GKssli~~l~~~~---~~-~--~~~t~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 90 (193)
+-|+++|+.++|||||+++|++.. .. + ...|....+..+.. ++..+.+||+||+++|.......+.++|++++
T Consensus 1 ~ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lL 80 (614)
T PRK10512 1 MIIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNMLAGVGGIDHALL 80 (614)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHHHHHHHHHhhcCCEEEE
Confidence 358999999999999999998643 22 1 24454444444433 45678999999999998888888899999999
Q ss_pred EEECCCh---hhHHHHHHHHHHHHcCCCCCCCe-EEEEEeCCCCCCCCCHhHHHhhhCCC--cCCCCceEEEEeccccCC
Q 029446 91 VVDSLDR---ERIGKAKQEFQAIIKDPFMLNSV-ILVFANKQDMKGAMTPMEVCEGLGLF--DLKNRKWHIQGTCALKGD 164 (193)
Q Consensus 91 v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~~~~~~~~~~~--~~~~~~~~~~~~Sa~~~~ 164 (193)
|+|+++. ++.+.+ .++.. .+.| +|+|+||+|+.++...++..+++... ...-...+++++||++|+
T Consensus 81 VVda~eg~~~qT~ehl-----~il~~---lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~ 152 (614)
T PRK10512 81 VVACDDGVMAQTREHL-----AILQL---TGNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGR 152 (614)
T ss_pred EEECCCCCcHHHHHHH-----HHHHH---cCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCC
Confidence 9999863 322222 22222 2344 57999999997643322222222110 001123589999999999
Q ss_pred CHHHHHHHHHHHHHh
Q 029446 165 GLYEGLDWLASTLKE 179 (193)
Q Consensus 165 gi~~~~~~l~~~~~~ 179 (193)
|++++++.|.+....
T Consensus 153 gI~~L~~~L~~~~~~ 167 (614)
T PRK10512 153 GIDALREHLLQLPER 167 (614)
T ss_pred CCHHHHHHHHHhhcc
Confidence 999999999876544
No 217
>COG2262 HflX GTPases [General function prediction only]
Probab=99.82 E-value=1.2e-18 Score=132.12 Aligned_cols=162 Identities=19% Similarity=0.160 Sum_probs=121.3
Q ss_pred hhhcCCCccEEEEEcCCCCCHHHHHHHHhcCCcc---ccccccceeEEEEEEc-CEEEEEEecCCCC---------CCHH
Q 029446 10 DVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVL---STVPTIGFNVEKVQYK-NVIFTVWDVGGQE---------KLRP 76 (193)
Q Consensus 10 ~~~~~~~~~~v~v~G~~~~GKssli~~l~~~~~~---~~~~t~~~~~~~~~~~-~~~~~i~D~~g~~---------~~~~ 76 (193)
++.....-+.|.++|..|+|||||+|++++.... ....|.+.+...+... +..+.+-||.|-- .|++
T Consensus 185 ~~R~~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AFks 264 (411)
T COG2262 185 KKRSRSGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRDLPHPLVEAFKS 264 (411)
T ss_pred hhhcccCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCCCceEEEecCccCcccCChHHHHHHHH
Confidence 3455567799999999999999999999987654 2468888888888775 6899999999933 3455
Q ss_pred hHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEE
Q 029446 77 LWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQ 156 (193)
Q Consensus 77 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (193)
+.... ..+|+++.|+|++++...+.+ .....++.......+|+|+|.||+|+.............. . ..+
T Consensus 265 TLEE~-~~aDlllhVVDaSdp~~~~~~-~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~~~~~~~~~~-------~-~~v 334 (411)
T COG2262 265 TLEEV-KEADLLLHVVDASDPEILEKL-EAVEDVLAEIGADEIPIILVLNKIDLLEDEEILAELERGS-------P-NPV 334 (411)
T ss_pred HHHHh-hcCCEEEEEeecCChhHHHHH-HHHHHHHHHcCCCCCCEEEEEecccccCchhhhhhhhhcC-------C-CeE
Confidence 55544 679999999999999544443 4455555554556799999999999877643111111111 1 478
Q ss_pred EeccccCCCHHHHHHHHHHHHHhhh
Q 029446 157 GTCALKGDGLYEGLDWLASTLKEMR 181 (193)
Q Consensus 157 ~~Sa~~~~gi~~~~~~l~~~~~~~~ 181 (193)
.+||++|+|++.+.+.|.+.+....
T Consensus 335 ~iSA~~~~gl~~L~~~i~~~l~~~~ 359 (411)
T COG2262 335 FISAKTGEGLDLLRERIIELLSGLR 359 (411)
T ss_pred EEEeccCcCHHHHHHHHHHHhhhcc
Confidence 8999999999999999999887554
No 218
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.82 E-value=4e-19 Score=128.81 Aligned_cols=152 Identities=24% Similarity=0.215 Sum_probs=99.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccc-----------------cccc-------cceeE-----------------EEEE
Q 029446 19 RVVMLGLDAAGKTTILYKLHIGEVLS-----------------TVPT-------IGFNV-----------------EKVQ 57 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~~~~~~-----------------~~~t-------~~~~~-----------------~~~~ 57 (193)
||+++|+.++|||||+++|..+.+.. .+.| .+.+. ....
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 58999999999999999998754421 0011 11111 1122
Q ss_pred EcCEEEEEEecCCCCCCHHhHHhhhc--CCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC
Q 029446 58 YKNVIFTVWDVGGQEKLRPLWRHYFN--NTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT 135 (193)
Q Consensus 58 ~~~~~~~i~D~~g~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 135 (193)
..+..+.+.|+||+..|.......+. .+|++++|+|+..... .....+..+... .++|+++|+||+|+.+...
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~--~~d~~~l~~l~~---~~ip~ivvvNK~D~~~~~~ 155 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGII--GMTKEHLGLALA---LNIPVFVVVTKIDLAPANI 155 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCc--HHHHHHHHHHHH---cCCCEEEEEECccccCHHH
Confidence 34678999999999988776665554 6899999999976432 222222222222 4688999999999876533
Q ss_pred HhH----HHhhhCCC---------------------cCCCCceEEEEeccccCCCHHHHHHHHHH
Q 029446 136 PME----VCEGLGLF---------------------DLKNRKWHIQGTCALKGDGLYEGLDWLAS 175 (193)
Q Consensus 136 ~~~----~~~~~~~~---------------------~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 175 (193)
..+ +.+.+... ......+|+|.+||.+|+|++++.+.|..
T Consensus 156 ~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 156 LQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred HHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 322 22233210 01223458999999999999999887753
No 219
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.81 E-value=2.6e-18 Score=127.61 Aligned_cols=110 Identities=20% Similarity=0.272 Sum_probs=79.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC--ccc----------------c-------ccccceeEEEEEEcCEEEEEEecCCCCC
Q 029446 19 RVVMLGLDAAGKTTILYKLHIGE--VLS----------------T-------VPTIGFNVEKVQYKNVIFTVWDVGGQEK 73 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~~~--~~~----------------~-------~~t~~~~~~~~~~~~~~~~i~D~~g~~~ 73 (193)
+|+++|++|+|||||+++|+... ... + ..+.......+.+.+.++.+|||||+.+
T Consensus 4 ni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~d 83 (267)
T cd04169 4 TFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHED 83 (267)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCchH
Confidence 69999999999999999997421 110 0 1122233446777899999999999999
Q ss_pred CHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 029446 74 LRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA 133 (193)
Q Consensus 74 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 133 (193)
|......+++.+|++++|+|+++..... ...++... .. .++|+++++||+|+...
T Consensus 84 f~~~~~~~l~~aD~~IlVvda~~g~~~~-~~~i~~~~-~~---~~~P~iivvNK~D~~~a 138 (267)
T cd04169 84 FSEDTYRTLTAVDSAVMVIDAAKGVEPQ-TRKLFEVC-RL---RGIPIITFINKLDREGR 138 (267)
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCccHH-HHHHHHHH-Hh---cCCCEEEEEECCccCCC
Confidence 8887777889999999999998653322 22333332 22 47899999999998643
No 220
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=1.5e-19 Score=120.42 Aligned_cols=163 Identities=31% Similarity=0.532 Sum_probs=136.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEEEEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEEC
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDS 94 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~ 94 (193)
.+.-|+++.|-.|+|||||++.|-++......||.-.+...+.+.+..++-+|.+|+..-+..|..++..+|++++.+|+
T Consensus 18 kK~gKllFlGLDNAGKTTLLHMLKdDrl~qhvPTlHPTSE~l~Ig~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~lvda 97 (193)
T KOG0077|consen 18 KKFGKLLFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELSIGGMTFTTFDLGGHLQARRVWKDYFPQVDAIVYLVDA 97 (193)
T ss_pred ccCceEEEEeecCCchhhHHHHHccccccccCCCcCCChHHheecCceEEEEccccHHHHHHHHHHHHhhhceeEeeeeh
Confidence 46679999999999999999999988877777888788888889999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcC------------CCCceEEEEecccc
Q 029446 95 LDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDL------------KNRKWHIQGTCALK 162 (193)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~Sa~~ 162 (193)
-+.+.|.+....+..++......+.|+++.+||+|.......++....+++... ..+-+.+|.||...
T Consensus 98 ~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evfmcsi~~ 177 (193)
T KOG0077|consen 98 YDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAASEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVFMCSIVR 177 (193)
T ss_pred hhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcccHHHHHHHHHHHHHhcccccccccCCCCCeEEEEEEEEEc
Confidence 999999999988888887666688999999999999987766666555442211 12334688899998
Q ss_pred CCCHHHHHHHHHHHH
Q 029446 163 GDGLYEGLDWLASTL 177 (193)
Q Consensus 163 ~~gi~~~~~~l~~~~ 177 (193)
+.|.-+.|.|+...+
T Consensus 178 ~~gy~e~fkwl~qyi 192 (193)
T KOG0077|consen 178 KMGYGEGFKWLSQYI 192 (193)
T ss_pred cCccceeeeehhhhc
Confidence 888777777776543
No 221
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.80 E-value=2.2e-18 Score=138.10 Aligned_cols=151 Identities=21% Similarity=0.226 Sum_probs=114.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCcc-cc--ccccceeEEEEEEcCEEEEEEecCC------CCCCHHhHHhhhc--C
Q 029446 16 SEMRVVMLGLDAAGKTTILYKLHIGEVL-ST--VPTIGFNVEKVQYKNVIFTVWDVGG------QEKLRPLWRHYFN--N 84 (193)
Q Consensus 16 ~~~~v~v~G~~~~GKssli~~l~~~~~~-~~--~~t~~~~~~~~~~~~~~~~i~D~~g------~~~~~~~~~~~~~--~ 84 (193)
+..+|+++|+||+|||||+|++++.... .+ +-|++-....+..++.++.+.|.|| ....+...+.++. +
T Consensus 2 ~~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~ 81 (653)
T COG0370 2 KKLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEGK 81 (653)
T ss_pred CcceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhcCC
Confidence 4567999999999999999999998765 34 3455555667778888899999999 2223444444444 5
Q ss_pred CCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC----CCHhHHHhhhCCCcCCCCceEEEEecc
Q 029446 85 TDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA----MTPMEVCEGLGLFDLKNRKWHIQGTCA 160 (193)
Q Consensus 85 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (193)
.|+++-|+|+++.+.--.+ ..++++ -+.|+|++.|++|..+. .+.+++.+.++. |+++++|
T Consensus 82 ~D~ivnVvDAtnLeRnLyl---tlQLlE----~g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~LGv--------PVv~tvA 146 (653)
T COG0370 82 PDLIVNVVDATNLERNLYL---TLQLLE----LGIPMILALNMIDEAKKRGIRIDIEKLSKLLGV--------PVVPTVA 146 (653)
T ss_pred CCEEEEEcccchHHHHHHH---HHHHHH----cCCCeEEEeccHhhHHhcCCcccHHHHHHHhCC--------CEEEEEe
Confidence 7999999999986643333 333333 37889999999998764 455667776665 8999999
Q ss_pred ccCCCHHHHHHHHHHHHHhhh
Q 029446 161 LKGDGLYEGLDWLASTLKEMR 181 (193)
Q Consensus 161 ~~~~gi~~~~~~l~~~~~~~~ 181 (193)
++|+|++++...+.+...++.
T Consensus 147 ~~g~G~~~l~~~i~~~~~~~~ 167 (653)
T COG0370 147 KRGEGLEELKRAIIELAESKT 167 (653)
T ss_pred ecCCCHHHHHHHHHHhccccc
Confidence 999999999999988665554
No 222
>PRK12735 elongation factor Tu; Reviewed
Probab=99.79 E-value=2.7e-18 Score=134.49 Aligned_cols=166 Identities=22% Similarity=0.191 Sum_probs=107.2
Q ss_pred HHHhhhhcCCCccEEEEEcCCCCCHHHHHHHHhcC-------Cc-----c-------ccccccceeEEEEEEcCEEEEEE
Q 029446 6 RKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIG-------EV-----L-------STVPTIGFNVEKVQYKNVIFTVW 66 (193)
Q Consensus 6 ~~~~~~~~~~~~~~v~v~G~~~~GKssli~~l~~~-------~~-----~-------~~~~t~~~~~~~~~~~~~~~~i~ 66 (193)
+..|++ ....++|+++|++++|||||+++|++. .+ . ....|.......+..+..++.++
T Consensus 3 ~~~~~~--~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~i 80 (396)
T PRK12735 3 KEKFER--TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHV 80 (396)
T ss_pred hhhcCC--CCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEE
Confidence 455663 346799999999999999999999862 10 0 01223333333344467789999
Q ss_pred ecCCCCCCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEE-EEEeCCCCCCCCCH-h----HHH
Q 029446 67 DVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVIL-VFANKQDMKGAMTP-M----EVC 140 (193)
Q Consensus 67 D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i-vv~nK~Dl~~~~~~-~----~~~ 140 (193)
||||+.+|.......+..+|++++|+|+.+...-+. ...+..+ .. .++|.| +++||+|+.+..+. + ++.
T Consensus 81 DtPGh~~f~~~~~~~~~~aD~~llVvda~~g~~~qt-~e~l~~~-~~---~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~ 155 (396)
T PRK12735 81 DCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQT-REHILLA-RQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVR 155 (396)
T ss_pred ECCCHHHHHHHHHhhhccCCEEEEEEECCCCCchhH-HHHHHHH-HH---cCCCeEEEEEEecCCcchHHHHHHHHHHHH
Confidence 999999888777777889999999999986432111 1222222 21 356755 68999999753222 1 222
Q ss_pred hhhCCCcCCCCceEEEEeccccCC----------CHHHHHHHHHHHHH
Q 029446 141 EGLGLFDLKNRKWHIQGTCALKGD----------GLYEGLDWLASTLK 178 (193)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~Sa~~~~----------gi~~~~~~l~~~~~ 178 (193)
..+........+++++++||.++. ++.++++.|.+.+.
T Consensus 156 ~~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~ 203 (396)
T PRK12735 156 ELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIP 203 (396)
T ss_pred HHHHHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCC
Confidence 222111111235789999999984 67888888877653
No 223
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.79 E-value=5.2e-18 Score=126.65 Aligned_cols=109 Identities=18% Similarity=0.231 Sum_probs=80.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCcc--c-------------------cccccceeEEEEEEcCEEEEEEecCCCCCCHHh
Q 029446 19 RVVMLGLDAAGKTTILYKLHIGEVL--S-------------------TVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPL 77 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~~~~~--~-------------------~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~ 77 (193)
+|+++|++|+|||||++++....-. . ...+.......+.+.+..+.+|||||+..+...
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~ 80 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE 80 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence 5899999999999999999742211 0 022333445566778899999999999888888
Q ss_pred HHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 029446 78 WRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKG 132 (193)
Q Consensus 78 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 132 (193)
+..++..+|++++|+|+++....... ..+..... .++|.++++||+|+..
T Consensus 81 ~~~~l~~aD~~i~Vvd~~~g~~~~~~-~~~~~~~~----~~~p~iivvNK~D~~~ 130 (268)
T cd04170 81 TRAALRAADAALVVVSAQSGVEVGTE-KLWEFADE----AGIPRIIFINKMDRER 130 (268)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHH-HHHHHHHH----cCCCEEEEEECCccCC
Confidence 88889999999999999876544332 22333222 4689999999999874
No 224
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.79 E-value=1.7e-18 Score=126.46 Aligned_cols=159 Identities=18% Similarity=0.164 Sum_probs=105.8
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccccc---ccc-ceeEEEEEEcCEEEEEEecCCCCC------------CHHh
Q 029446 14 GNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTV---PTI-GFNVEKVQYKNVIFTVWDVGGQEK------------LRPL 77 (193)
Q Consensus 14 ~~~~~~v~v~G~~~~GKssli~~l~~~~~~~~~---~t~-~~~~~~~~~~~~~~~i~D~~g~~~------------~~~~ 77 (193)
..+.+.|+|+|.||+|||||.|.+.+...+... .|+ --....+.-...++.++||||-.. +...
T Consensus 69 ~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~ 148 (379)
T KOG1423|consen 69 AQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQN 148 (379)
T ss_pred cceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhC
Confidence 467899999999999999999999998876432 222 222344555789999999999111 1112
Q ss_pred HHhhhcCCCEEEEEEECCChhhHH--HHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC-----------------HhH
Q 029446 78 WRHYFNNTDGLIYVVDSLDRERIG--KAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT-----------------PME 138 (193)
Q Consensus 78 ~~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-----------------~~~ 138 (193)
....++++|++++++|+++....- .+...+... .++|-|+|.||.|...... ..+
T Consensus 149 ~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~y------s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~ 222 (379)
T KOG1423|consen 149 PRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEY------SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLE 222 (379)
T ss_pred HHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHH------hcCCceeeccchhcchhhhHHhhhHHhccccccchhhhh
Confidence 234567899999999998532211 111222222 5688999999999875310 112
Q ss_pred HHhhhCCCc-----CCCCce----EEEEeccccCCCHHHHHHHHHHHHH
Q 029446 139 VCEGLGLFD-----LKNRKW----HIQGTCALKGDGLYEGLDWLASTLK 178 (193)
Q Consensus 139 ~~~~~~~~~-----~~~~~~----~~~~~Sa~~~~gi~~~~~~l~~~~~ 178 (193)
+.+.+.... -..+++ .+|.+||.+|+||+++-++|+.+..
T Consensus 223 v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~ 271 (379)
T KOG1423|consen 223 VQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAP 271 (379)
T ss_pred HHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCC
Confidence 222222111 112233 4999999999999999999998774
No 225
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.79 E-value=8.5e-18 Score=125.02 Aligned_cols=109 Identities=19% Similarity=0.213 Sum_probs=80.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhc--CCcc-------------------ccccccceeEEEEEEcCEEEEEEecCCCCCCHHh
Q 029446 19 RVVMLGLDAAGKTTILYKLHI--GEVL-------------------STVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPL 77 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~--~~~~-------------------~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~ 77 (193)
+|+++|++++|||||+++|.. +... ....|.......+.+.+.++.+|||||+..+...
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~ 80 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE 80 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence 589999999999999999963 1110 0122333445567778999999999999999888
Q ss_pred HHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 029446 78 WRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKG 132 (193)
Q Consensus 78 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 132 (193)
+..+++.+|++++|+|+.+...-+. ...+..... .++|+++++||+|+..
T Consensus 81 ~~~~l~~aD~ailVVDa~~g~~~~t-~~~~~~~~~----~~~p~ivviNK~D~~~ 130 (270)
T cd01886 81 VERSLRVLDGAVAVFDAVAGVEPQT-ETVWRQADR----YNVPRIAFVNKMDRTG 130 (270)
T ss_pred HHHHHHHcCEEEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECCCCCC
Confidence 9999999999999999976432221 233333322 4689999999999864
No 226
>PRK12736 elongation factor Tu; Reviewed
Probab=99.79 E-value=2.5e-18 Score=134.53 Aligned_cols=160 Identities=19% Similarity=0.172 Sum_probs=105.1
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCc------------c-------ccccccceeEEEEEEcCEEEEEEecCCCCCC
Q 029446 14 GNSEMRVVMLGLDAAGKTTILYKLHIGEV------------L-------STVPTIGFNVEKVQYKNVIFTVWDVGGQEKL 74 (193)
Q Consensus 14 ~~~~~~v~v~G~~~~GKssli~~l~~~~~------------~-------~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~ 74 (193)
....++|+++|+.++|||||+++|++... . ....|.......+..+...+.++||||+.+|
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f 88 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADY 88 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHH
Confidence 45679999999999999999999986210 0 1122333333334345678999999999988
Q ss_pred HHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCe-EEEEEeCCCCCCCCCHh-----HHHhhhCCCcC
Q 029446 75 RPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSV-ILVFANKQDMKGAMTPM-----EVCEGLGLFDL 148 (193)
Q Consensus 75 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~~-----~~~~~~~~~~~ 148 (193)
.......+..+|++++|+|+.+...-+. ...+..+ .. .++| +|+++||+|+.+..+.. ++...+....+
T Consensus 89 ~~~~~~~~~~~d~~llVvd~~~g~~~~t-~~~~~~~-~~---~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~ 163 (394)
T PRK12736 89 VKNMITGAAQMDGAILVVAATDGPMPQT-REHILLA-RQ---VGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDF 163 (394)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCchhH-HHHHHHH-HH---cCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCC
Confidence 8877777789999999999986422111 1222222 22 3567 67899999987542221 22222221112
Q ss_pred CCCceEEEEeccccCC--------CHHHHHHHHHHHHH
Q 029446 149 KNRKWHIQGTCALKGD--------GLYEGLDWLASTLK 178 (193)
Q Consensus 149 ~~~~~~~~~~Sa~~~~--------gi~~~~~~l~~~~~ 178 (193)
....++++++||++|. +++++++.+.+.+.
T Consensus 164 ~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp 201 (394)
T PRK12736 164 PGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP 201 (394)
T ss_pred CcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence 2235689999999983 57788888777664
No 227
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.78 E-value=8.7e-18 Score=124.05 Aligned_cols=156 Identities=17% Similarity=0.146 Sum_probs=115.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCcc--cc-ccccceeEEEEEEcCEEEEEEecCC--------CCCCHHhHHhhhc-
Q 029446 16 SEMRVVMLGLDAAGKTTILYKLHIGEVL--ST-VPTIGFNVEKVQYKNVIFTVWDVGG--------QEKLRPLWRHYFN- 83 (193)
Q Consensus 16 ~~~~v~v~G~~~~GKssli~~l~~~~~~--~~-~~t~~~~~~~~~~~~~~~~i~D~~g--------~~~~~~~~~~~~~- 83 (193)
..+.|+|.|.||+|||||++.+++.... +| .+|-++++..+..+..+++++|||| ...-......+++
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~h 246 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAILALRH 246 (346)
T ss_pred CCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHHHHHHHH
Confidence 4578999999999999999999998765 45 4788899999999999999999999 1112222233333
Q ss_pred CCCEEEEEEECCCh--hhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccc
Q 029446 84 NTDGLIYVVDSLDR--ERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCAL 161 (193)
Q Consensus 84 ~~d~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (193)
-.++++|+||++.. -+++.+...+.++... -+.|+++|+||+|..+....++....+.. ..+.....+++.
T Consensus 247 l~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~---f~~p~v~V~nK~D~~~~e~~~~~~~~~~~----~~~~~~~~~~~~ 319 (346)
T COG1084 247 LAGVILFLFDPSETCGYSLEEQISLLEEIKEL---FKAPIVVVINKIDIADEEKLEEIEASVLE----EGGEEPLKISAT 319 (346)
T ss_pred hcCeEEEEEcCccccCCCHHHHHHHHHHHHHh---cCCCeEEEEecccccchhHHHHHHHHHHh----hccccccceeee
Confidence 37899999999854 5677787888887654 23899999999999976555555444321 122235668888
Q ss_pred cCCCHHHHHHHHHHHHH
Q 029446 162 KGDGLYEGLDWLASTLK 178 (193)
Q Consensus 162 ~~~gi~~~~~~l~~~~~ 178 (193)
.+.+++.+...+.....
T Consensus 320 ~~~~~d~~~~~v~~~a~ 336 (346)
T COG1084 320 KGCGLDKLREEVRKTAL 336 (346)
T ss_pred ehhhHHHHHHHHHHHhh
Confidence 88888888877777643
No 228
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.78 E-value=2.3e-18 Score=122.98 Aligned_cols=159 Identities=13% Similarity=0.082 Sum_probs=97.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccce---eE--EEEEE-cCEEEEEEecCCCCCCHHh-----HHhhhcC
Q 029446 17 EMRVVMLGLDAAGKTTILYKLHIGEVLS-TVPTIGF---NV--EKVQY-KNVIFTVWDVGGQEKLRPL-----WRHYFNN 84 (193)
Q Consensus 17 ~~~v~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~---~~--~~~~~-~~~~~~i~D~~g~~~~~~~-----~~~~~~~ 84 (193)
+++|+++|.+|+|||||+|.+.+..... ..++.+. +. ..+.. ....+.+||+||....... ....+.+
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~ 80 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPDDYLEEMKFSE 80 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHHHHHHHhCccC
Confidence 4789999999999999999999865532 2222221 11 11111 1246899999997543222 2223567
Q ss_pred CCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC---------HhHHH----hhhCCC--cCC
Q 029446 85 TDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT---------PMEVC----EGLGLF--DLK 149 (193)
Q Consensus 85 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~---------~~~~~----~~~~~~--~~~ 149 (193)
+|+++++.+. ++......+.+.+.. .+.|+++|+||+|+..... .+++. +..... ...
T Consensus 81 ~d~~l~v~~~----~~~~~d~~~~~~l~~---~~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~ 153 (197)
T cd04104 81 YDFFIIISST----RFSSNDVKLAKAIQC---MGKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAG 153 (197)
T ss_pred cCEEEEEeCC----CCCHHHHHHHHHHHH---hCCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcC
Confidence 8998888542 244444444444443 2578999999999853211 11111 111100 001
Q ss_pred CCceEEEEeccc--cCCCHHHHHHHHHHHHHhhhc
Q 029446 150 NRKWHIQGTCAL--KGDGLYEGLDWLASTLKEMRA 182 (193)
Q Consensus 150 ~~~~~~~~~Sa~--~~~gi~~~~~~l~~~~~~~~~ 182 (193)
....++|.+|+. .+.|+..+.+.|...+.+.+.
T Consensus 154 ~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~~ 188 (197)
T cd04104 154 VSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHKR 188 (197)
T ss_pred CCCCCEEEEeCCChhhcChHHHHHHHHHHhhHHHH
Confidence 122369999999 678999999999999987654
No 229
>CHL00071 tufA elongation factor Tu
Probab=99.78 E-value=4.4e-18 Score=133.78 Aligned_cols=153 Identities=22% Similarity=0.194 Sum_probs=99.2
Q ss_pred HHHhhhhcCCCccEEEEEcCCCCCHHHHHHHHhcCCcc------------c-------cccccceeEEEEEEcCEEEEEE
Q 029446 6 RKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVL------------S-------TVPTIGFNVEKVQYKNVIFTVW 66 (193)
Q Consensus 6 ~~~~~~~~~~~~~~v~v~G~~~~GKssli~~l~~~~~~------------~-------~~~t~~~~~~~~~~~~~~~~i~ 66 (193)
+++|.. ....++|+++|++++|||||+++|++..-. + ...|.......+..+..++.+.
T Consensus 3 ~~~~~~--~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~i 80 (409)
T CHL00071 3 REKFER--KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHV 80 (409)
T ss_pred hhhccC--CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEE
Confidence 344443 456799999999999999999999864110 0 1112222223344467889999
Q ss_pred ecCCCCCCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCe-EEEEEeCCCCCCCCCH-h----HHH
Q 029446 67 DVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSV-ILVFANKQDMKGAMTP-M----EVC 140 (193)
Q Consensus 67 D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~-~----~~~ 140 (193)
||||+.+|.......+..+|++++|+|+..... .....+..+... .++| +|+++||+|+.+.... + ++.
T Consensus 81 DtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~--~qt~~~~~~~~~---~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~ 155 (409)
T CHL00071 81 DCPGHADYVKNMITGAAQMDGAILVVSAADGPM--PQTKEHILLAKQ---VGVPNIVVFLNKEDQVDDEELLELVELEVR 155 (409)
T ss_pred ECCChHHHHHHHHHHHHhCCEEEEEEECCCCCc--HHHHHHHHHHHH---cCCCEEEEEEEccCCCCHHHHHHHHHHHHH
Confidence 999999888887778889999999999975422 222222222222 3567 7789999999864321 1 222
Q ss_pred hhhCCCcCCCCceEEEEeccccCCC
Q 029446 141 EGLGLFDLKNRKWHIQGTCALKGDG 165 (193)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~Sa~~~~g 165 (193)
..+.........++++++||.+|++
T Consensus 156 ~~l~~~~~~~~~~~ii~~Sa~~g~n 180 (409)
T CHL00071 156 ELLSKYDFPGDDIPIVSGSALLALE 180 (409)
T ss_pred HHHHHhCCCCCcceEEEcchhhccc
Confidence 2222211222357899999999874
No 230
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.78 E-value=4.4e-18 Score=133.29 Aligned_cols=152 Identities=21% Similarity=0.172 Sum_probs=97.3
Q ss_pred HHHhhhhcCCCccEEEEEcCCCCCHHHHHHHHhcCC------------cc-------ccccccceeEEEEEEcCEEEEEE
Q 029446 6 RKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGE------------VL-------STVPTIGFNVEKVQYKNVIFTVW 66 (193)
Q Consensus 6 ~~~~~~~~~~~~~~v~v~G~~~~GKssli~~l~~~~------------~~-------~~~~t~~~~~~~~~~~~~~~~i~ 66 (193)
+.+|+ .....++|+++|+.++|||||+++|.+.. .. +...|.......+.....++.+|
T Consensus 3 ~~~~~--~~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~li 80 (394)
T TIGR00485 3 KEKFE--RTKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHV 80 (394)
T ss_pred hhhhc--CCCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEE
Confidence 44455 34678999999999999999999997420 00 11234344334444467889999
Q ss_pred ecCCCCCCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEE-EEEeCCCCCCCCCHh-----HHH
Q 029446 67 DVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVIL-VFANKQDMKGAMTPM-----EVC 140 (193)
Q Consensus 67 D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i-vv~nK~Dl~~~~~~~-----~~~ 140 (193)
||||+++|..........+|++++|+|+.+...-+. ...+..+.. .++|.+ +++||+|+.+..+.. ++.
T Consensus 81 DtpGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~qt-~e~l~~~~~----~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~ 155 (394)
T TIGR00485 81 DCPGHADYVKNMITGAAQMDGAILVVSATDGPMPQT-REHILLARQ----VGVPYIVVFLNKCDMVDDEELLELVEMEVR 155 (394)
T ss_pred ECCchHHHHHHHHHHHhhCCEEEEEEECCCCCcHHH-HHHHHHHHH----cCCCEEEEEEEecccCCHHHHHHHHHHHHH
Confidence 999999998777777788999999999986422221 122222222 356654 789999987642211 222
Q ss_pred hhhCCCcCCCCceEEEEeccccCC
Q 029446 141 EGLGLFDLKNRKWHIQGTCALKGD 164 (193)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (193)
..+.........++++++||.++.
T Consensus 156 ~~l~~~~~~~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 156 ELLSEYDFPGDDTPIIRGSALKAL 179 (394)
T ss_pred HHHHhcCCCccCccEEECcccccc
Confidence 222211112234789999999875
No 231
>PRK13351 elongation factor G; Reviewed
Probab=99.78 E-value=1.1e-17 Score=139.45 Aligned_cols=116 Identities=19% Similarity=0.135 Sum_probs=90.5
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhcCCc--------------c-------ccccccceeEEEEEEcCEEEEEEecCCC
Q 029446 13 FGNSEMRVVMLGLDAAGKTTILYKLHIGEV--------------L-------STVPTIGFNVEKVQYKNVIFTVWDVGGQ 71 (193)
Q Consensus 13 ~~~~~~~v~v~G~~~~GKssli~~l~~~~~--------------~-------~~~~t~~~~~~~~~~~~~~~~i~D~~g~ 71 (193)
..+...+|+++|+.++|||||+++|+...- . ....|+......+.+....+.+|||||+
T Consensus 4 ~~~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~ 83 (687)
T PRK13351 4 PLMQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGH 83 (687)
T ss_pred ccccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCc
Confidence 345678999999999999999999974210 0 1234555666678888999999999999
Q ss_pred CCCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 029446 72 EKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA 133 (193)
Q Consensus 72 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 133 (193)
.++...+..+++.+|++++|+|+++....+.. ..+..+.. .++|+++++||+|+...
T Consensus 84 ~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~-~~~~~~~~----~~~p~iiviNK~D~~~~ 140 (687)
T PRK13351 84 IDFTGEVERSLRVLDGAVVVFDAVTGVQPQTE-TVWRQADR----YGIPRLIFINKMDRVGA 140 (687)
T ss_pred HHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHH-HHHHHHHh----cCCCEEEEEECCCCCCC
Confidence 99999999999999999999999887665544 33333322 46899999999998864
No 232
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.77 E-value=4.3e-18 Score=123.04 Aligned_cols=108 Identities=21% Similarity=0.204 Sum_probs=77.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCcccc------------------ccccceeE----EEEE-----EcCEEEEEEecCCC
Q 029446 19 RVVMLGLDAAGKTTILYKLHIGEVLST------------------VPTIGFNV----EKVQ-----YKNVIFTVWDVGGQ 71 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~~~~~~~------------------~~t~~~~~----~~~~-----~~~~~~~i~D~~g~ 71 (193)
+|+++|+.++|||||+++|+....... ....+.++ ..+. .....+.+|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 589999999999999999986432210 01112221 1222 12478999999999
Q ss_pred CCCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCC
Q 029446 72 EKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMK 131 (193)
Q Consensus 72 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 131 (193)
.++......++..+|++++|+|+.+..+... ..++..... .+.|+++|+||+|+.
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~----~~~p~iiviNK~D~~ 136 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL----EGLPIVLVINKIDRL 136 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECcccC
Confidence 9998888888999999999999987665433 233333322 358999999999986
No 233
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.76 E-value=2.7e-17 Score=121.21 Aligned_cols=156 Identities=20% Similarity=0.198 Sum_probs=112.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCcc--cc-ccccceeEEEEEEcCEEEEEEecCCC----CCCH---HhHHhhhcC
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHIGEVL--ST-VPTIGFNVEKVQYKNVIFTVWDVGGQ----EKLR---PLWRHYFNN 84 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~--~~-~~t~~~~~~~~~~~~~~~~i~D~~g~----~~~~---~~~~~~~~~ 84 (193)
.-.-.|+++|.|++|||||++.|++.... +| .+|.......+.+++.++++.|+||- ...+ .......++
T Consensus 61 sGda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~R~ 140 (365)
T COG1163 61 SGDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVARN 140 (365)
T ss_pred cCCeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecCceEEEEcCcccccCcccCCCCcceeeeeecc
Confidence 34568999999999999999999997654 45 46777777889999999999999972 1111 234456689
Q ss_pred CCEEEEEEECCChhh-HHHHHH--------------------------------------------HHHHH---------
Q 029446 85 TDGLIYVVDSLDRER-IGKAKQ--------------------------------------------EFQAI--------- 110 (193)
Q Consensus 85 ~d~~i~v~d~~~~~s-~~~~~~--------------------------------------------~~~~~--------- 110 (193)
||++++|+|+..... .+.+.. .+.+.
T Consensus 141 ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~I 220 (365)
T COG1163 141 ADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLI 220 (365)
T ss_pred CCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEEE
Confidence 999999999985322 222222 11111
Q ss_pred ------------HcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHHHHHHHHH
Q 029446 111 ------------IKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLK 178 (193)
Q Consensus 111 ------------~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~ 178 (193)
+..+ ..-+|.++|.||.|+...+....+.+.. ..+.+||+.+.|++++.+.|.+.+-
T Consensus 221 r~dvTlDd~id~l~~n-rvY~p~l~v~NKiD~~~~e~~~~l~~~~----------~~v~isa~~~~nld~L~e~i~~~L~ 289 (365)
T COG1163 221 REDVTLDDLIDALEGN-RVYKPALYVVNKIDLPGLEELERLARKP----------NSVPISAKKGINLDELKERIWDVLG 289 (365)
T ss_pred ecCCcHHHHHHHHhhc-ceeeeeEEEEecccccCHHHHHHHHhcc----------ceEEEecccCCCHHHHHHHHHHhhC
Confidence 1100 1146899999999999864454554433 5899999999999999999999885
Q ss_pred hhh
Q 029446 179 EMR 181 (193)
Q Consensus 179 ~~~ 181 (193)
--+
T Consensus 290 liR 292 (365)
T COG1163 290 LIR 292 (365)
T ss_pred eEE
Confidence 444
No 234
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.76 E-value=3.4e-17 Score=131.73 Aligned_cols=114 Identities=19% Similarity=0.304 Sum_probs=82.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhc--CCcc----------------cc-------ccccceeEEEEEEcCEEEEEEecC
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHI--GEVL----------------ST-------VPTIGFNVEKVQYKNVIFTVWDVG 69 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~--~~~~----------------~~-------~~t~~~~~~~~~~~~~~~~i~D~~ 69 (193)
.+.-+|+|+|++++|||||+++|+. +... ++ ..++......+.+++..+.+||||
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTP 87 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTP 87 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECC
Confidence 4567999999999999999999963 1110 00 112223334567788999999999
Q ss_pred CCCCCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 029446 70 GQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA 133 (193)
Q Consensus 70 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 133 (193)
|+..|......+++.+|++++|+|+++...-. ...++... . ..++|+++++||+|+...
T Consensus 88 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~-t~~l~~~~-~---~~~iPiiv~iNK~D~~~a 146 (526)
T PRK00741 88 GHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQ-TRKLMEVC-R---LRDTPIFTFINKLDRDGR 146 (526)
T ss_pred CchhhHHHHHHHHHHCCEEEEEEecCCCCCHH-HHHHHHHH-H---hcCCCEEEEEECCccccc
Confidence 99999887778889999999999998653221 22333332 2 257899999999998754
No 235
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.76 E-value=2e-17 Score=119.48 Aligned_cols=108 Identities=16% Similarity=0.160 Sum_probs=78.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCc--cc-----------------cccccceeEEEEEEc----------CEEEEEEecC
Q 029446 19 RVVMLGLDAAGKTTILYKLHIGEV--LS-----------------TVPTIGFNVEKVQYK----------NVIFTVWDVG 69 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~~~~--~~-----------------~~~t~~~~~~~~~~~----------~~~~~i~D~~ 69 (193)
+|+++|+.++|||||+++|....- .. ...|.......+.+. ...+.+||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 689999999999999999975321 10 011222222223332 6889999999
Q ss_pred CCCCCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCC
Q 029446 70 GQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMK 131 (193)
Q Consensus 70 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 131 (193)
|+..|......+++.+|++++|+|+.+....+.. ..+..... .++|+|+|+||+|+.
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~-~~l~~~~~----~~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTE-TVLRQALK----ERVKPVLVINKIDRL 138 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHH-HHHHHHHH----cCCCEEEEEECCCcc
Confidence 9999999999999999999999999876554432 23333322 357899999999976
No 236
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.76 E-value=9.8e-18 Score=121.16 Aligned_cols=159 Identities=23% Similarity=0.327 Sum_probs=104.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCcc-cc---ccccceeEEEEEE-cCEEEEEEecCCCCCCHH-----hHHhhhcCCCEE
Q 029446 19 RVVMLGLDAAGKTTILYKLHIGEVL-ST---VPTIGFNVEKVQY-KNVIFTVWDVGGQEKLRP-----LWRHYFNNTDGL 88 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~~~~~-~~---~~t~~~~~~~~~~-~~~~~~i~D~~g~~~~~~-----~~~~~~~~~d~~ 88 (193)
||+++|+.++||||+.+-++.+..+ ++ ++|..++...+.. ..+.+.+||+||+..+-. .....+++++++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~L 80 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGVL 80 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESEE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCEE
Confidence 7999999999999999998877654 32 5788888777765 578999999999976544 357778999999
Q ss_pred EEEEECCChh---hHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHH--------HhhhCCCcCCCCceEEEE
Q 029446 89 IYVVDSLDRE---RIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEV--------CEGLGLFDLKNRKWHIQG 157 (193)
Q Consensus 89 i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~--------~~~~~~~~~~~~~~~~~~ 157 (193)
|||+|+...+ .+......+..+.+.+ ++..+.+.+.|+|+..++...+. .+.+. ......+.++.
T Consensus 81 IyV~D~qs~~~~~~l~~~~~~i~~l~~~s--p~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~--~~~~~~~~~~~ 156 (232)
T PF04670_consen 81 IYVFDAQSDDYDEDLAYLSDCIEALRQYS--PNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELE--DLGIEDITFFL 156 (232)
T ss_dssp EEEEETT-STCHHHHHHHHHHHHHHHHHS--TT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHH--HTT-TSEEEEE
T ss_pred EEEEEcccccHHHHHHHHHHHHHHHHHhC--CCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhh--hccccceEEEe
Confidence 9999998433 2333334444444432 68889999999999875332221 11111 01111478999
Q ss_pred eccccCCCHHHHHHHHHHHHHhhhc
Q 029446 158 TCALKGDGLYEGLDWLASTLKEMRA 182 (193)
Q Consensus 158 ~Sa~~~~gi~~~~~~l~~~~~~~~~ 182 (193)
||..+ +.+-+.+..+++.+.++..
T Consensus 157 TSI~D-~Sly~A~S~Ivq~LiP~~~ 180 (232)
T PF04670_consen 157 TSIWD-ESLYEAWSKIVQKLIPNLS 180 (232)
T ss_dssp E-TTS-THHHHHHHHHHHTTSTTHC
T ss_pred ccCcC-cHHHHHHHHHHHHHcccHH
Confidence 99887 6799999999998876654
No 237
>PRK00049 elongation factor Tu; Reviewed
Probab=99.76 E-value=1.8e-17 Score=129.74 Aligned_cols=159 Identities=21% Similarity=0.153 Sum_probs=104.6
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCcc-------------------ccccccceeEEEEEEcCEEEEEEecCCCCCC
Q 029446 14 GNSEMRVVMLGLDAAGKTTILYKLHIGEVL-------------------STVPTIGFNVEKVQYKNVIFTVWDVGGQEKL 74 (193)
Q Consensus 14 ~~~~~~v~v~G~~~~GKssli~~l~~~~~~-------------------~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~ 74 (193)
....++|+++|+.++|||||+++|++.... ....|.......+..+..++.+.||||+.+|
T Consensus 9 ~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f 88 (396)
T PRK00049 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADY 88 (396)
T ss_pred CCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHH
Confidence 356799999999999999999999863110 1122333333334446788999999999888
Q ss_pred HHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEE-EEEeCCCCCCCCCH-h----HHHhhhCCCcC
Q 029446 75 RPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVIL-VFANKQDMKGAMTP-M----EVCEGLGLFDL 148 (193)
Q Consensus 75 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i-vv~nK~Dl~~~~~~-~----~~~~~~~~~~~ 148 (193)
.......+..+|++++|+|+.+...-+ ....+.. ... .+.|.+ +++||+|+.+.... + ++...+.....
T Consensus 89 ~~~~~~~~~~aD~~llVVDa~~g~~~q-t~~~~~~-~~~---~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~ 163 (396)
T PRK00049 89 VKNMITGAAQMDGAILVVSAADGPMPQ-TREHILL-ARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDF 163 (396)
T ss_pred HHHHHhhhccCCEEEEEEECCCCCchH-HHHHHHH-HHH---cCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCC
Confidence 777777789999999999997643211 1122222 222 357875 68999999753221 1 22233322112
Q ss_pred CCCceEEEEeccccCC----------CHHHHHHHHHHHH
Q 029446 149 KNRKWHIQGTCALKGD----------GLYEGLDWLASTL 177 (193)
Q Consensus 149 ~~~~~~~~~~Sa~~~~----------gi~~~~~~l~~~~ 177 (193)
...+++++++||+++. ++..+++.|.+.+
T Consensus 164 ~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~ 202 (396)
T PRK00049 164 PGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYI 202 (396)
T ss_pred CccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcC
Confidence 2345789999999875 5677777777654
No 238
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=3.7e-17 Score=113.66 Aligned_cols=165 Identities=24% Similarity=0.336 Sum_probs=120.4
Q ss_pred hcCCCccEEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEEEEEcCEEEEEEecCCCCCCHHhHHhhhc---CCCEE
Q 029446 12 FFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFN---NTDGL 88 (193)
Q Consensus 12 ~~~~~~~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~---~~d~~ 88 (193)
....++-.|+++|..++|||+|+-+|..+....+.+....+...+..+.-...++|.||+.+.+.....++. .+-++
T Consensus 33 ~rrs~~~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSiepn~a~~r~gs~~~~LVD~PGH~rlR~kl~e~~~~~~~akai 112 (238)
T KOG0090|consen 33 FRRSKQNAVLLVGLSDSGKTSLFTQLITGSHRGTVTSIEPNEATYRLGSENVTLVDLPGHSRLRRKLLEYLKHNYSAKAI 112 (238)
T ss_pred HhhccCCcEEEEecCCCCceeeeeehhcCCccCeeeeeccceeeEeecCcceEEEeCCCcHHHHHHHHHHccccccceeE
Confidence 344555789999999999999999999997766666667777777777777999999999999988888877 79999
Q ss_pred EEEEECC-ChhhHHHHHHHHHHHHcCC--CCCCCeEEEEEeCCCCCCCCCHhHHHhhh----------------------
Q 029446 89 IYVVDSL-DRERIGKAKQEFQAIIKDP--FMLNSVILVFANKQDMKGAMTPMEVCEGL---------------------- 143 (193)
Q Consensus 89 i~v~d~~-~~~s~~~~~~~~~~~~~~~--~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~---------------------- 143 (193)
+||+|.. .......+..++-+++... .....|+++++||.|+......+.+...+
T Consensus 113 VFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~ 192 (238)
T KOG0090|consen 113 VFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDI 192 (238)
T ss_pred EEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhccccccc
Confidence 9999985 2233344444555554433 34678999999999998643332221111
Q ss_pred -------------CCCcCCCCceEEEEeccccCCCHHHHHHHHHHHH
Q 029446 144 -------------GLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTL 177 (193)
Q Consensus 144 -------------~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~ 177 (193)
....+....+.+.++|++++ +++++.+||.+++
T Consensus 193 ~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~l 238 (238)
T KOG0090|consen 193 AKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREAL 238 (238)
T ss_pred cccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHhC
Confidence 01122335678999999988 7999999998753
No 239
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.75 E-value=9.4e-18 Score=116.38 Aligned_cols=123 Identities=26% Similarity=0.403 Sum_probs=79.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEEEEE---cCEEEEEEecCCCCCCHHhHHhh---hcCCCEEE
Q 029446 16 SEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQY---KNVIFTVWDVGGQEKLRPLWRHY---FNNTDGLI 89 (193)
Q Consensus 16 ~~~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~---~~~~~~i~D~~g~~~~~~~~~~~---~~~~d~~i 89 (193)
+.-.|+++|++|+|||+|+.+|..+....+.+....+. .... ....+.++|+||+.+.+...... ..++.++|
T Consensus 2 k~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~e~n~-~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~II 80 (181)
T PF09439_consen 2 KRPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSMENNI-AYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGII 80 (181)
T ss_dssp ---EEEEE-STTSSHHHHHHHHHHSS---B---SSEEE-ECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEEE
T ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCcCCeeccccCCc-eEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEEE
Confidence 45679999999999999999999997765544443333 2222 45689999999999998765554 78999999
Q ss_pred EEEECCC-hhhHHHHHHHHHHHHcC--CCCCCCeEEEEEeCCCCCCCCCHhHH
Q 029446 90 YVVDSLD-RERIGKAKQEFQAIIKD--PFMLNSVILVFANKQDMKGAMTPMEV 139 (193)
Q Consensus 90 ~v~d~~~-~~s~~~~~~~~~~~~~~--~~~~~~p~ivv~nK~Dl~~~~~~~~~ 139 (193)
||+|++. ...+.+..+.+-.++.. .....+|++|++||.|+........+
T Consensus 81 fvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~~~~~I 133 (181)
T PF09439_consen 81 FVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAKPPKKI 133 (181)
T ss_dssp EEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT---HHHH
T ss_pred EEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccCCHHHH
Confidence 9999973 44555555555555542 22467899999999999876544333
No 240
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=99.74 E-value=7.9e-20 Score=123.99 Aligned_cols=161 Identities=19% Similarity=0.245 Sum_probs=129.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE--EEEE---cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEE
Q 029446 17 EMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE--KVQY---KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIY 90 (193)
Q Consensus 17 ~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~---~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 90 (193)
-++++|+|..++|||++++++....++ .+-.|++.+.. ..++ ..+++++||..||+++....+-+++.+.+.++
T Consensus 25 L~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~~i 104 (229)
T KOG4423|consen 25 LFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGAFI 104 (229)
T ss_pred hhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcceEE
Confidence 489999999999999999999988887 56688887653 3444 34788999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHcC---CCCCCCeEEEEEeCCCCCCCCCHh--HHHhhhCCCcCCCCce-EEEEeccccCC
Q 029446 91 VVDSLDRERIGKAKQEFQAIIKD---PFMLNSVILVFANKQDMKGAMTPM--EVCEGLGLFDLKNRKW-HIQGTCALKGD 164 (193)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~---~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 164 (193)
|||+++.-+|+....|.+++... +.....|+++..||||..+....+ +...++. ++.++ .++++|++.+.
T Consensus 105 Vfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~----kengf~gwtets~Kenk 180 (229)
T KOG4423|consen 105 VFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFK----KENGFEGWTETSAKENK 180 (229)
T ss_pred EEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHH----hccCccceeeecccccc
Confidence 99999999999999999998764 344568899999999987653222 1111111 22333 49999999999
Q ss_pred CHHHHHHHHHHHHHhhh
Q 029446 165 GLYEGLDWLASTLKEMR 181 (193)
Q Consensus 165 gi~~~~~~l~~~~~~~~ 181 (193)
+++|.-..+++++.-+.
T Consensus 181 ni~Ea~r~lVe~~lvnd 197 (229)
T KOG4423|consen 181 NIPEAQRELVEKILVND 197 (229)
T ss_pred ChhHHHHHHHHHHHhhc
Confidence 99999999999887554
No 241
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.74 E-value=3.5e-17 Score=108.86 Aligned_cols=135 Identities=19% Similarity=0.230 Sum_probs=89.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEEEEEcCEEEEEEecCC----CCCCHHhHHhhhcCCCEEEEEEEC
Q 029446 19 RVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGG----QEKLRPLWRHYFNNTDGLIYVVDS 94 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g----~~~~~~~~~~~~~~~d~~i~v~d~ 94 (193)
||+++|+.|||||||+++|.+.... +..|-.+.+. =..+|||| ...+.........++|.++++.|+
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~~-~~KTq~i~~~--------~~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~da 73 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEIR-YKKTQAIEYY--------DNTIDTPGEYIENPRFYHALIVTAQDADVVLLLQDA 73 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCCC-cCccceeEec--------ccEEECChhheeCHHHHHHHHHHHhhCCEEEEEecC
Confidence 7899999999999999999986653 2233322221 13489999 333444444455789999999999
Q ss_pred CChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC-CCCHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHHHH
Q 029446 95 LDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKG-AMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 173 (193)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l 173 (193)
+++.+.-. ..+... -++|+|=|+||+|+.. ....+...+.+...-++ .+|++|+.+|+|++++.++|
T Consensus 74 t~~~~~~p--P~fa~~------f~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~----~if~vS~~~~eGi~eL~~~L 141 (143)
T PF10662_consen 74 TEPRSVFP--PGFASM------FNKPVIGVITKIDLPSDDANIERAKKWLKNAGVK----EIFEVSAVTGEGIEELKDYL 141 (143)
T ss_pred CCCCccCC--chhhcc------cCCCEEEEEECccCccchhhHHHHHHHHHHcCCC----CeEEEECCCCcCHHHHHHHH
Confidence 97643111 111111 2578999999999993 32333333333321111 36999999999999999887
Q ss_pred H
Q 029446 174 A 174 (193)
Q Consensus 174 ~ 174 (193)
.
T Consensus 142 ~ 142 (143)
T PF10662_consen 142 E 142 (143)
T ss_pred h
Confidence 4
No 242
>PLN03126 Elongation factor Tu; Provisional
Probab=99.74 E-value=9.7e-17 Score=127.63 Aligned_cols=147 Identities=22% Similarity=0.169 Sum_probs=97.4
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCc------c-------------ccccccceeEEEEEEcCEEEEEEecCCCCCC
Q 029446 14 GNSEMRVVMLGLDAAGKTTILYKLHIGEV------L-------------STVPTIGFNVEKVQYKNVIFTVWDVGGQEKL 74 (193)
Q Consensus 14 ~~~~~~v~v~G~~~~GKssli~~l~~~~~------~-------------~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~ 74 (193)
....++|+++|++++|||||+++|+...- . ....|.......+..++.++.++|+||+.+|
T Consensus 78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f 157 (478)
T PLN03126 78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY 157 (478)
T ss_pred cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHH
Confidence 34578999999999999999999985210 0 0112222333344556789999999999999
Q ss_pred HHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCe-EEEEEeCCCCCCCCCH-h----HHHhhhCCCcC
Q 029446 75 RPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSV-ILVFANKQDMKGAMTP-M----EVCEGLGLFDL 148 (193)
Q Consensus 75 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~-~----~~~~~~~~~~~ 148 (193)
.......+..+|++++|+|+.+...-+. ...+..+ .. .++| +|+++||+|+.+..+. + ++...+....+
T Consensus 158 ~~~~~~g~~~aD~ailVVda~~G~~~qt-~e~~~~~-~~---~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~ 232 (478)
T PLN03126 158 VKNMITGAAQMDGAILVVSGADGPMPQT-KEHILLA-KQ---VGVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEF 232 (478)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCcHHH-HHHHHHH-HH---cCCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCC
Confidence 8888888889999999999986532221 2233322 22 3567 7889999999763221 2 22222222112
Q ss_pred CCCceEEEEeccccCCC
Q 029446 149 KNRKWHIQGTCALKGDG 165 (193)
Q Consensus 149 ~~~~~~~~~~Sa~~~~g 165 (193)
...+++++++|+.++.+
T Consensus 233 ~~~~~~~vp~Sa~~g~n 249 (478)
T PLN03126 233 PGDDIPIISGSALLALE 249 (478)
T ss_pred CcCcceEEEEEcccccc
Confidence 23468999999998753
No 243
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.74 E-value=3.5e-17 Score=121.40 Aligned_cols=160 Identities=24% Similarity=0.197 Sum_probs=110.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCcc--cc-ccccceeEEEEEE-cCEEEEEEecCCCCC-------CHHhHHhhhcCCCE
Q 029446 19 RVVMLGLDAAGKTTILYKLHIGEVL--ST-VPTIGFNVEKVQY-KNVIFTVWDVGGQEK-------LRPLWRHYFNNTDG 87 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~~~~~--~~-~~t~~~~~~~~~~-~~~~~~i~D~~g~~~-------~~~~~~~~~~~~d~ 87 (193)
.|.++|.||+|||||++.++..... +| .+|.-.+...+.. ...+|.+-|.||--+ .-...-..++.|.+
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~v 240 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLRHIERTRV 240 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecCCCcEEEecCcccccccccCCCccHHHHHHHHhhhe
Confidence 5789999999999999999987754 44 3666666666664 567799999999222 11122233578999
Q ss_pred EEEEEECCChh---hHHHHHHHHHHHHcC-CCCCCCeEEEEEeCCCCCCC-CCHhHHHhhhCCCcCCCCceEEEEecccc
Q 029446 88 LIYVVDSLDRE---RIGKAKQEFQAIIKD-PFMLNSVILVFANKQDMKGA-MTPMEVCEGLGLFDLKNRKWHIQGTCALK 162 (193)
Q Consensus 88 ~i~v~d~~~~~---s~~~~~~~~~~~~~~-~~~~~~p~ivv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (193)
++.|+|++..+ ..+.......++... ....++|.++|+||+|+... +..++..+.+... ..+...++ +||.+
T Consensus 241 L~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~--~~~~~~~~-ISa~t 317 (369)
T COG0536 241 LLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEA--LGWEVFYL-ISALT 317 (369)
T ss_pred eEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHh--cCCCccee-eehhc
Confidence 99999998543 344444444444332 35578999999999996554 3334444444311 11111233 99999
Q ss_pred CCCHHHHHHHHHHHHHhhh
Q 029446 163 GDGLYEGLDWLASTLKEMR 181 (193)
Q Consensus 163 ~~gi~~~~~~l~~~~~~~~ 181 (193)
++|++++...+.+.+.+..
T Consensus 318 ~~g~~~L~~~~~~~l~~~~ 336 (369)
T COG0536 318 REGLDELLRALAELLEETK 336 (369)
T ss_pred ccCHHHHHHHHHHHHHHhh
Confidence 9999999999999988775
No 244
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.74 E-value=2.8e-17 Score=131.04 Aligned_cols=153 Identities=18% Similarity=0.089 Sum_probs=98.2
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhcCCc--cc------------c----------------------ccccceeEEEE
Q 029446 13 FGNSEMRVVMLGLDAAGKTTILYKLHIGEV--LS------------T----------------------VPTIGFNVEKV 56 (193)
Q Consensus 13 ~~~~~~~v~v~G~~~~GKssli~~l~~~~~--~~------------~----------------------~~t~~~~~~~~ 56 (193)
.....++|+++|++++|||||+++|+...- .. . ..|+...+..+
T Consensus 23 ~~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~ 102 (474)
T PRK05124 23 QHKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYF 102 (474)
T ss_pred cccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEe
Confidence 346779999999999999999999975321 10 0 11223333344
Q ss_pred EEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC-
Q 029446 57 QYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT- 135 (193)
Q Consensus 57 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~- 135 (193)
..+..++.++||||++.|.......+..+|++++|+|+.....-+. .....+.... ...|+|+++||+|+.+...
T Consensus 103 ~~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt--~~~~~l~~~l--g~~~iIvvvNKiD~~~~~~~ 178 (474)
T PRK05124 103 STEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQT--RRHSFIATLL--GIKHLVVAVNKMDLVDYSEE 178 (474)
T ss_pred ccCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccc--hHHHHHHHHh--CCCceEEEEEeeccccchhH
Confidence 5567899999999999987776666799999999999975421111 1111111111 1247899999999975322
Q ss_pred -HhHHHhhhCC--CcCC-CCceEEEEeccccCCCHHHH
Q 029446 136 -PMEVCEGLGL--FDLK-NRKWHIQGTCALKGDGLYEG 169 (193)
Q Consensus 136 -~~~~~~~~~~--~~~~-~~~~~~~~~Sa~~~~gi~~~ 169 (193)
..++.+.+.. .... ....+++++||++|+|++++
T Consensus 179 ~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 179 VFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred HHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 2223222210 0001 22468999999999998764
No 245
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.74 E-value=2.3e-16 Score=131.38 Aligned_cols=115 Identities=19% Similarity=0.160 Sum_probs=85.4
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCC--cc------------c-------cccccceeEEEEEEcCEEEEEEecCCCC
Q 029446 14 GNSEMRVVMLGLDAAGKTTILYKLHIGE--VL------------S-------TVPTIGFNVEKVQYKNVIFTVWDVGGQE 72 (193)
Q Consensus 14 ~~~~~~v~v~G~~~~GKssli~~l~~~~--~~------------~-------~~~t~~~~~~~~~~~~~~~~i~D~~g~~ 72 (193)
..+--+|+|+|++++|||||+++|.... .. + ...|.......+.+++.++.+|||||+.
T Consensus 7 ~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~ 86 (689)
T TIGR00484 7 LNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHV 86 (689)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCc
Confidence 3455699999999999999999996311 10 0 1223344456677789999999999999
Q ss_pred CCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 029446 73 KLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA 133 (193)
Q Consensus 73 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 133 (193)
++...+..+++.+|++++|+|+.+....+.. ..+..+ .. .++|+++++||+|+...
T Consensus 87 ~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~-~~---~~~p~ivviNK~D~~~~ 142 (689)
T TIGR00484 87 DFTVEVERSLRVLDGAVAVLDAVGGVQPQSE-TVWRQA-NR---YEVPRIAFVNKMDKTGA 142 (689)
T ss_pred chhHHHHHHHHHhCEEEEEEeCCCCCChhHH-HHHHHH-HH---cCCCEEEEEECCCCCCC
Confidence 9888888899999999999999875444332 233333 22 46899999999998753
No 246
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.73 E-value=4.5e-17 Score=134.48 Aligned_cols=160 Identities=18% Similarity=0.088 Sum_probs=102.7
Q ss_pred HHHHhhhhcCCCccEEEEEcCCCCCHHHHHHHHhcCCccc--------------c----------------------ccc
Q 029446 5 FRKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLS--------------T----------------------VPT 48 (193)
Q Consensus 5 ~~~~~~~~~~~~~~~v~v~G~~~~GKssli~~l~~~~~~~--------------~----------------------~~t 48 (193)
+..++........++|+++|++++|||||+++|+...-.. . +.|
T Consensus 12 ~~~~~~~~~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~T 91 (632)
T PRK05506 12 ILAYLAQHERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGIT 91 (632)
T ss_pred HHHHHhhccCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcC
Confidence 4556666666778999999999999999999998632110 0 112
Q ss_pred cceeEEEEEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCC
Q 029446 49 IGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQ 128 (193)
Q Consensus 49 ~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~ 128 (193)
....+..+..++.++.++||||++.|.......+..+|++++|+|+.....-+. .....+.... ...|+|+++||+
T Consensus 92 id~~~~~~~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t--~e~~~~~~~~--~~~~iivvvNK~ 167 (632)
T PRK05506 92 IDVAYRYFATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQT--RRHSFIASLL--GIRHVVLAVNKM 167 (632)
T ss_pred ceeeeeEEccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccC--HHHHHHHHHh--CCCeEEEEEEec
Confidence 222333455567889999999998887766667889999999999975432111 1111112211 235788999999
Q ss_pred CCCCCCC--HhHHHhhhCC--CcCCCCceEEEEeccccCCCHHH
Q 029446 129 DMKGAMT--PMEVCEGLGL--FDLKNRKWHIQGTCALKGDGLYE 168 (193)
Q Consensus 129 Dl~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~Sa~~~~gi~~ 168 (193)
|+.+... ..++..++.. ....-..++++++||++|.|+++
T Consensus 168 D~~~~~~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 168 DLVDYDQEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred ccccchhHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 9975321 2222222210 00111235799999999999874
No 247
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.73 E-value=4.8e-17 Score=127.80 Aligned_cols=147 Identities=18% Similarity=0.103 Sum_probs=94.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC--ccc------------c----------------------ccccceeEEEEEEcCE
Q 029446 18 MRVVMLGLDAAGKTTILYKLHIGE--VLS------------T----------------------VPTIGFNVEKVQYKNV 61 (193)
Q Consensus 18 ~~v~v~G~~~~GKssli~~l~~~~--~~~------------~----------------------~~t~~~~~~~~~~~~~ 61 (193)
++|+++|+.++|||||+++|+... ... . ..|....+..+..++.
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 589999999999999999996421 100 0 1123333444555678
Q ss_pred EEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHH
Q 029446 62 IFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT--PMEV 139 (193)
Q Consensus 62 ~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~ 139 (193)
++.++||||+++|.......+..+|++++|+|+.....-+. .....+.... ...++|+++||+|+.+... .+++
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt--~~~~~~~~~~--~~~~iivviNK~D~~~~~~~~~~~i 156 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQT--RRHSYIASLL--GIRHVVLAVNKMDLVDYDEEVFENI 156 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCcccc--HHHHHHHHHc--CCCcEEEEEEecccccchHHHHHHH
Confidence 99999999999998777777899999999999975432111 1111122211 2346889999999875321 1122
Q ss_pred HhhhCC--CcCCCCceEEEEeccccCCCHHH
Q 029446 140 CEGLGL--FDLKNRKWHIQGTCALKGDGLYE 168 (193)
Q Consensus 140 ~~~~~~--~~~~~~~~~~~~~Sa~~~~gi~~ 168 (193)
.+.+.. .......++++++||++|+|+++
T Consensus 157 ~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 157 KKDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred HHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 222210 00111245799999999999885
No 248
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.73 E-value=5.8e-17 Score=128.37 Aligned_cols=152 Identities=22% Similarity=0.183 Sum_probs=100.5
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcC--Ccc-------------------------c-------cccccceeEEEEEEc
Q 029446 14 GNSEMRVVMLGLDAAGKTTILYKLHIG--EVL-------------------------S-------TVPTIGFNVEKVQYK 59 (193)
Q Consensus 14 ~~~~~~v~v~G~~~~GKssli~~l~~~--~~~-------------------------~-------~~~t~~~~~~~~~~~ 59 (193)
....++|+++|+.++|||||+.+|+.. ... + ...|.......+.++
T Consensus 4 ~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~ 83 (446)
T PTZ00141 4 EKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETP 83 (446)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccC
Confidence 356789999999999999999998751 100 0 122333444556667
Q ss_pred CEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCChh---hH--HHHHHHHHHHHcCCCCCCCe-EEEEEeCCCCC--
Q 029446 60 NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE---RI--GKAKQEFQAIIKDPFMLNSV-ILVFANKQDMK-- 131 (193)
Q Consensus 60 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~--~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~-- 131 (193)
...+.++|+||+.+|.......+..+|++++|+|+.... .+ +........+... .++| +|+++||+|..
T Consensus 84 ~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~---~gi~~iiv~vNKmD~~~~ 160 (446)
T PTZ00141 84 KYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFT---LGVKQMIVCINKMDDKTV 160 (446)
T ss_pred CeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHH---cCCCeEEEEEEccccccc
Confidence 889999999999999988888889999999999998642 01 0111111222222 3554 67999999943
Q ss_pred CC--CCHhH----HHhhhCCCcCCCCceEEEEeccccCCCHHH
Q 029446 132 GA--MTPME----VCEGLGLFDLKNRKWHIQGTCALKGDGLYE 168 (193)
Q Consensus 132 ~~--~~~~~----~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 168 (193)
+. ...++ +...+....+...+++++++|+.+|+|+.+
T Consensus 161 ~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 161 NYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred hhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 21 22222 333332222233468999999999999864
No 249
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.73 E-value=6e-17 Score=128.22 Aligned_cols=150 Identities=19% Similarity=0.170 Sum_probs=98.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCC--cc-------------------------c-------cccccceeEEEEEEcC
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHIGE--VL-------------------------S-------TVPTIGFNVEKVQYKN 60 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~~~--~~-------------------------~-------~~~t~~~~~~~~~~~~ 60 (193)
...++|+++|+.++|||||+.+|+... .. + ...|.......+....
T Consensus 5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~ 84 (447)
T PLN00043 5 KVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTK 84 (447)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCC
Confidence 456899999999999999998886311 00 0 1223334444455578
Q ss_pred EEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCChhhHH------HHHHHHHHHHcCCCCCCC-eEEEEEeCCCCCCC
Q 029446 61 VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIG------KAKQEFQAIIKDPFMLNS-VILVFANKQDMKGA 133 (193)
Q Consensus 61 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~------~~~~~~~~~~~~~~~~~~-p~ivv~nK~Dl~~~ 133 (193)
..+.++|+||+++|.......+..+|++++|+|+++. .|+ ........+... .++ ++|+++||+|+.+.
T Consensus 85 ~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~~~~~---~gi~~iIV~vNKmD~~~~ 160 (447)
T PLN00043 85 YYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHALLAFT---LGVKQMICCCNKMDATTP 160 (447)
T ss_pred EEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHHHHHH---cCCCcEEEEEEcccCCch
Confidence 8999999999999999999999999999999999863 222 111112222221 355 47889999997631
Q ss_pred ----CCH----hHHHhhhCCCcCCCCceEEEEeccccCCCHHH
Q 029446 134 ----MTP----MEVCEGLGLFDLKNRKWHIQGTCALKGDGLYE 168 (193)
Q Consensus 134 ----~~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 168 (193)
... +++...+....+...+++++++||.+|+|+.+
T Consensus 161 ~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 161 KYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred hhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 111 22222222212223357899999999999853
No 250
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.72 E-value=4.9e-16 Score=125.13 Aligned_cols=112 Identities=20% Similarity=0.281 Sum_probs=80.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhc--CCccc----------------c-------ccccceeEEEEEEcCEEEEEEecC
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHI--GEVLS----------------T-------VPTIGFNVEKVQYKNVIFTVWDVG 69 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~--~~~~~----------------~-------~~t~~~~~~~~~~~~~~~~i~D~~ 69 (193)
.+.-+|+|+|++++|||||+++|+. +.... . ..++......+.+++..+.+||||
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP 88 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP 88 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence 4677999999999999999999852 21110 0 111222334566788999999999
Q ss_pred CCCCCHHhHHhhhcCCCEEEEEEECCChhhHHHH-HHHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 029446 70 GQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKA-KQEFQAIIKDPFMLNSVILVFANKQDMKG 132 (193)
Q Consensus 70 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 132 (193)
|+..|.......+..+|++++|+|+++.. +.. ..++. .... .++|+++++||+|+..
T Consensus 89 G~~df~~~~~~~l~~aD~aIlVvDa~~gv--~~~t~~l~~-~~~~---~~~PiivviNKiD~~~ 146 (527)
T TIGR00503 89 GHEDFSEDTYRTLTAVDNCLMVIDAAKGV--ETRTRKLME-VTRL---RDTPIFTFMNKLDRDI 146 (527)
T ss_pred ChhhHHHHHHHHHHhCCEEEEEEECCCCC--CHHHHHHHH-HHHh---cCCCEEEEEECccccC
Confidence 99988887777889999999999998642 222 23333 3332 5789999999999863
No 251
>PLN03127 Elongation factor Tu; Provisional
Probab=99.72 E-value=2.2e-16 Score=124.90 Aligned_cols=160 Identities=19% Similarity=0.172 Sum_probs=103.6
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcC------Cc------cc-------cccccceeEEEEEEcCEEEEEEecCCCCCC
Q 029446 14 GNSEMRVVMLGLDAAGKTTILYKLHIG------EV------LS-------TVPTIGFNVEKVQYKNVIFTVWDVGGQEKL 74 (193)
Q Consensus 14 ~~~~~~v~v~G~~~~GKssli~~l~~~------~~------~~-------~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~ 74 (193)
....++|+++|+.++|||||+++|.+. .. .+ ...|.......+..++.++.+.||||+..|
T Consensus 58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f 137 (447)
T PLN03127 58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHADY 137 (447)
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccch
Confidence 456789999999999999999999732 10 00 123444444445556789999999999998
Q ss_pred HHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCe-EEEEEeCCCCCCCCCH-h----HHHhhhCCCcC
Q 029446 75 RPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSV-ILVFANKQDMKGAMTP-M----EVCEGLGLFDL 148 (193)
Q Consensus 75 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~-~----~~~~~~~~~~~ 148 (193)
.......+..+|++++|+|+.+... .....+..++.. .++| +|+++||+|+.+.... + ++.+.+.....
T Consensus 138 ~~~~~~g~~~aD~allVVda~~g~~--~qt~e~l~~~~~---~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~~ 212 (447)
T PLN03127 138 VKNMITGAAQMDGGILVVSAPDGPM--PQTKEHILLARQ---VGVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYKF 212 (447)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCc--hhHHHHHHHHHH---cCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhCC
Confidence 8877777788999999999976432 111222222222 4577 5789999999863221 1 12222221112
Q ss_pred CCCceEEEEeccc---cCCC-------HHHHHHHHHHHHH
Q 029446 149 KNRKWHIQGTCAL---KGDG-------LYEGLDWLASTLK 178 (193)
Q Consensus 149 ~~~~~~~~~~Sa~---~~~g-------i~~~~~~l~~~~~ 178 (193)
....++++++|+. ++.| +.++++.+.+.+.
T Consensus 213 ~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp 252 (447)
T PLN03127 213 PGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIP 252 (447)
T ss_pred CCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCC
Confidence 2345789988876 4444 6778888777654
No 252
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.72 E-value=4.3e-16 Score=118.03 Aligned_cols=154 Identities=23% Similarity=0.218 Sum_probs=96.7
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCcc-------ccccccceeEEEE-------------------E-EcCEEEEEEecCCC-
Q 029446 20 VVMLGLDAAGKTTILYKLHIGEVL-------STVPTIGFNVEKV-------------------Q-YKNVIFTVWDVGGQ- 71 (193)
Q Consensus 20 v~v~G~~~~GKssli~~l~~~~~~-------~~~~t~~~~~~~~-------------------~-~~~~~~~i~D~~g~- 71 (193)
|+++|.+|+|||||+|++++.... ...|+.|..+... + ...+.+++||+||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 579999999999999999987643 1123333333211 0 13478999999996
Q ss_pred ---CCCHHhHHh---hhcCCCEEEEEEECCC---------------h-hhHHHHHHH-----------------------
Q 029446 72 ---EKLRPLWRH---YFNNTDGLIYVVDSLD---------------R-ERIGKAKQE----------------------- 106 (193)
Q Consensus 72 ---~~~~~~~~~---~~~~~d~~i~v~d~~~---------------~-~s~~~~~~~----------------------- 106 (193)
.++..+... .++++|++++|+|++. + ..++.+...
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~~~d~~~~~~~~~~~dp~~d~~~i~~El~~~d~~~~~~~~~~~~~~~~~~ 160 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDASGGTDAEGNGVETGGHDPLEDIEFLENEIDMWIYGILEKNWEKIVRKADAE 160 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 445444333 4789999999999973 1 011111110
Q ss_pred ---------------------HHHHHcCC---------------------CCCCCeEEEEEeCCCCCCCCCHhHHHhhhC
Q 029446 107 ---------------------FQAIIKDP---------------------FMLNSVILVFANKQDMKGAMTPMEVCEGLG 144 (193)
Q Consensus 107 ---------------------~~~~~~~~---------------------~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~ 144 (193)
+..++... ....+|+|+|+||+|+.... +..+.+.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~llt~KPvI~VlNK~Dl~~~~---~~~~~l~ 237 (318)
T cd01899 161 KTDIVEALSEQLSGFGVNEKDVIEALEELELPEDLSKWTDEDLLRLARALRKRSKPMVIAANKADIPDAE---NNISKLR 237 (318)
T ss_pred CccHHHHHHHHHhhccccHHHHHHHHHhCCCCCcccCCCHHHHHHHHHHHHhcCCcEEEEEEHHHccChH---HHHHHHH
Confidence 00111000 02357999999999976432 2222221
Q ss_pred CCcCCCCceEEEEeccccCCCHHHHHH-HHHHHHHh
Q 029446 145 LFDLKNRKWHIQGTCALKGDGLYEGLD-WLASTLKE 179 (193)
Q Consensus 145 ~~~~~~~~~~~~~~Sa~~~~gi~~~~~-~l~~~~~~ 179 (193)
. .....+++++||+.+.+++++.+ .+.+++++
T Consensus 238 ~---~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe 270 (318)
T cd01899 238 L---KYPDEIVVPTSAEAELALRRAAKQGLIKYDPG 270 (318)
T ss_pred h---hCCCCeEEEEeCcccccHHHHHHhhHHHhCCC
Confidence 1 12234799999999999999998 68888864
No 253
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.71 E-value=2.2e-17 Score=129.57 Aligned_cols=160 Identities=16% Similarity=0.186 Sum_probs=120.9
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccccccccceeE---EEEEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEE
Q 029446 14 GNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNV---EKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIY 90 (193)
Q Consensus 14 ~~~~~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~---~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 90 (193)
..+.++|+++|+.|+||||||-++....+++..|..-..+ ..+.-..+...|.|++..+.-+.....-++.+|++.+
T Consensus 6 t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~l 85 (625)
T KOG1707|consen 6 TLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVICL 85 (625)
T ss_pred CccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccCCccCcCcCceEEEecccccchhHHHHHHHhhcCEEEE
Confidence 4578999999999999999999999998875433332111 2233345678999999877777666777799999999
Q ss_pred EEECCChhhHHHHHHHHHHHHcCC--CCCCCeEEEEEeCCCCCCCCCH--hH----HHhhhCCCcCCCCceEEEEecccc
Q 029446 91 VVDSLDRERIGKAKQEFQAIIKDP--FMLNSVILVFANKQDMKGAMTP--ME----VCEGLGLFDLKNRKWHIQGTCALK 162 (193)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~p~ivv~nK~Dl~~~~~~--~~----~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (193)
+++.+++.+++.+...|...++.. ...+.|+|+|+||+|....... +. +..++... -.+++|||++
T Consensus 86 vyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~Ei------EtciecSA~~ 159 (625)
T KOG1707|consen 86 VYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEI------ETCIECSALT 159 (625)
T ss_pred EEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHH------HHHHhhhhhh
Confidence 999999999999998888777753 2367999999999998764322 11 22222211 1389999999
Q ss_pred CCCHHHHHHHHHHHHHh
Q 029446 163 GDGLYEGLDWLASTLKE 179 (193)
Q Consensus 163 ~~gi~~~~~~l~~~~~~ 179 (193)
..++.++|..-.+.+..
T Consensus 160 ~~n~~e~fYyaqKaVih 176 (625)
T KOG1707|consen 160 LANVSELFYYAQKAVIH 176 (625)
T ss_pred hhhhHhhhhhhhheeec
Confidence 99999999887776643
No 254
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.71 E-value=2.2e-16 Score=123.31 Aligned_cols=160 Identities=18% Similarity=0.145 Sum_probs=114.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCc-----------cc---cccccceeE----EEEEEcC---EEEEEEecCCCCC
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHIGEV-----------LS---TVPTIGFNV----EKVQYKN---VIFTVWDVGGQEK 73 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~~~~-----------~~---~~~t~~~~~----~~~~~~~---~~~~i~D~~g~~~ 73 (193)
++-=++.|+.+..-|||||..+|..-.- -+ .....|+++ ..+.+.. +.+.++|||||.+
T Consensus 58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvD 137 (650)
T KOG0462|consen 58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVD 137 (650)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccc
Confidence 3445889999999999999999975211 00 112223333 3455544 8999999999999
Q ss_pred CHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCce
Q 029446 74 LRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKW 153 (193)
Q Consensus 74 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 153 (193)
|.......+.-|+++++|+|++..-.-+....++..+- .+..+|.|+||+|+...+ ++++...+.. .+.....
T Consensus 138 Fs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe-----~~L~iIpVlNKIDlp~ad-pe~V~~q~~~-lF~~~~~ 210 (650)
T KOG0462|consen 138 FSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFE-----AGLAIIPVLNKIDLPSAD-PERVENQLFE-LFDIPPA 210 (650)
T ss_pred ccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHH-----cCCeEEEeeeccCCCCCC-HHHHHHHHHH-HhcCCcc
Confidence 99998888899999999999987655555555555442 467799999999998863 3333322211 1122233
Q ss_pred EEEEeccccCCCHHHHHHHHHHHHHhhh
Q 029446 154 HIQGTCALKGDGLYEGLDWLASTLKEMR 181 (193)
Q Consensus 154 ~~~~~Sa~~~~gi~~~~~~l~~~~~~~~ 181 (193)
+++.+||++|.|+++++++|++.++.-.
T Consensus 211 ~~i~vSAK~G~~v~~lL~AII~rVPpP~ 238 (650)
T KOG0462|consen 211 EVIYVSAKTGLNVEELLEAIIRRVPPPK 238 (650)
T ss_pred ceEEEEeccCccHHHHHHHHHhhCCCCC
Confidence 7999999999999999999999886544
No 255
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.71 E-value=8.8e-16 Score=100.51 Aligned_cols=103 Identities=23% Similarity=0.294 Sum_probs=72.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCcc---c-cccccceeEEEEEEcCEEEEEEecCCCCCC---------HHhHHhhhcCC
Q 029446 19 RVVMLGLDAAGKTTILYKLHIGEVL---S-TVPTIGFNVEKVQYKNVIFTVWDVGGQEKL---------RPLWRHYFNNT 85 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~~~~~---~-~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~---------~~~~~~~~~~~ 85 (193)
+|+|+|.+|+|||||+|+|++.... . ...|....+..+......+.++||||-..- .......+..+
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 80 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQISKS 80 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCTE
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHHC
Confidence 6899999999999999999986432 2 234555555667778899999999995432 11123334789
Q ss_pred CEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeC
Q 029446 86 DGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANK 127 (193)
Q Consensus 86 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK 127 (193)
|++++|+|++++.. +.....+..+ + .+.|+++|+||
T Consensus 81 d~ii~vv~~~~~~~-~~~~~~~~~l-~----~~~~~i~v~NK 116 (116)
T PF01926_consen 81 DLIIYVVDASNPIT-EDDKNILREL-K----NKKPIILVLNK 116 (116)
T ss_dssp SEEEEEEETTSHSH-HHHHHHHHHH-H----TTSEEEEEEES
T ss_pred CEEEEEEECCCCCC-HHHHHHHHHH-h----cCCCEEEEEcC
Confidence 99999999877322 2222333333 2 57999999998
No 256
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.71 E-value=1.2e-16 Score=126.26 Aligned_cols=163 Identities=13% Similarity=0.099 Sum_probs=105.9
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhcCCccc------cccccceeEEEE-----------------EE-----------
Q 029446 13 FGNSEMRVVMLGLDAAGKTTILYKLHIGEVLS------TVPTIGFNVEKV-----------------QY----------- 58 (193)
Q Consensus 13 ~~~~~~~v~v~G~~~~GKssli~~l~~~~~~~------~~~t~~~~~~~~-----------------~~----------- 58 (193)
..+..++|+++|+...|||||+..|++-.... ...|...-+... ..
T Consensus 30 ~~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (460)
T PTZ00327 30 SRQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGC 109 (460)
T ss_pred cCCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccc
Confidence 45677999999999999999999999743211 122221111100 00
Q ss_pred -----cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCChh-hHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 029446 59 -----KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE-RIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKG 132 (193)
Q Consensus 59 -----~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 132 (193)
....+.++|+||++.|-......+..+|++++|+|+.+.. .-+.. ..+ .+.... .-.|+|+|+||+|+.+
T Consensus 110 ~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~-ehl-~i~~~l--gi~~iIVvlNKiDlv~ 185 (460)
T PTZ00327 110 GHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTS-EHL-AAVEIM--KLKHIIILQNKIDLVK 185 (460)
T ss_pred cccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhH-HHH-HHHHHc--CCCcEEEEEecccccC
Confidence 0247899999999999888888888999999999998631 11111 111 222211 2246899999999986
Q ss_pred CCCHhHHHhhhCCC--cCCCCceEEEEeccccCCCHHHHHHHHHHHHHh
Q 029446 133 AMTPMEVCEGLGLF--DLKNRKWHIQGTCALKGDGLYEGLDWLASTLKE 179 (193)
Q Consensus 133 ~~~~~~~~~~~~~~--~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~ 179 (193)
.....+..+++... .......+++++||++|+|+++|++.|.+.+..
T Consensus 186 ~~~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~ 234 (460)
T PTZ00327 186 EAQAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIPI 234 (460)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCCC
Confidence 43322222211100 001245689999999999999999999976653
No 257
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.70 E-value=7.1e-16 Score=110.09 Aligned_cols=163 Identities=17% Similarity=0.071 Sum_probs=101.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcccc-----ccccceeEEEEEEcCEEEEEEecCCCCCCH-------Hh----HHhh
Q 029446 18 MRVVMLGLDAAGKTTILYKLHIGEVLST-----VPTIGFNVEKVQYKNVIFTVWDVGGQEKLR-------PL----WRHY 81 (193)
Q Consensus 18 ~~v~v~G~~~~GKssli~~l~~~~~~~~-----~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~-------~~----~~~~ 81 (193)
.+|+++|.+|+|||||+|.+++...... ..|.........+.+.++.++||||-.... .. ....
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~ 80 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLS 80 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhc
Confidence 4799999999999999999998765422 245555555666688899999999944321 11 1122
Q ss_pred hcCCCEEEEEEECCCh-hhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhC---CCcCCCCceEEEE
Q 029446 82 FNNTDGLIYVVDSLDR-ERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLG---LFDLKNRKWHIQG 157 (193)
Q Consensus 82 ~~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 157 (193)
..++|++++|+++.+. .....+.+++.+..... .-.++|++.|+.|.......++...... ....+.++-.++.
T Consensus 81 ~~g~~~illVi~~~~~t~~d~~~l~~l~~~fg~~--~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~~~ 158 (196)
T cd01852 81 APGPHAFLLVVPLGRFTEEEEQAVETLQELFGEK--VLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRYVA 158 (196)
T ss_pred CCCCEEEEEEEECCCcCHHHHHHHHHHHHHhChH--hHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeEEE
Confidence 3578999999999762 12222333444433211 1246899999999776543333221111 0011233334545
Q ss_pred ec-----cccCCCHHHHHHHHHHHHHhhhc
Q 029446 158 TC-----ALKGDGLYEGLDWLASTLKEMRA 182 (193)
Q Consensus 158 ~S-----a~~~~gi~~~~~~l~~~~~~~~~ 182 (193)
++ +..+.+++++++.|.+.+.+...
T Consensus 159 f~~~~~~~~~~~q~~~Ll~~i~~~~~~~~~ 188 (196)
T cd01852 159 FNNKAKGEEQEQQVKELLAKVESMVKENGG 188 (196)
T ss_pred EeCCCCcchhHHHHHHHHHHHHHHHHhcCC
Confidence 54 34567899999999999877553
No 258
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.70 E-value=8.6e-16 Score=120.06 Aligned_cols=156 Identities=23% Similarity=0.162 Sum_probs=116.4
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhcCCcccc---ccccceeEEEEEE-cCEEEEEEecCCCCCCHHhHHhhhcCCCEE
Q 029446 13 FGNSEMRVVMLGLDAAGKTTILYKLHIGEVLST---VPTIGFNVEKVQY-KNVIFTVWDVGGQEKLRPLWRHYFNNTDGL 88 (193)
Q Consensus 13 ~~~~~~~v~v~G~~~~GKssli~~l~~~~~~~~---~~t~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 88 (193)
...+++-|-|+|+..-|||||+..|.+...... +.|-.+-...+.. ++.++++.||||+..|...+....+..|.+
T Consensus 149 l~~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~G~~iTFLDTPGHaAF~aMRaRGA~vtDIv 228 (683)
T KOG1145|consen 149 LEPRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPSGKSITFLDTPGHAAFSAMRARGANVTDIV 228 (683)
T ss_pred cCCCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCCCCEEEEecCCcHHHHHHHHhccCccccEE
Confidence 345888999999999999999999998876532 1222222223322 678999999999999999998888899999
Q ss_pred EEEEECCCh---hhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcC----CCCceEEEEeccc
Q 029446 89 IYVVDSLDR---ERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDL----KNRKWHIQGTCAL 161 (193)
Q Consensus 89 i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~ 161 (193)
++|+.+.|. ++.+.+ +.....+.|+|+.+||+|.+.. .++.+.+++..... -..+++++++||+
T Consensus 229 VLVVAadDGVmpQT~EaI--------khAk~A~VpiVvAinKiDkp~a-~pekv~~eL~~~gi~~E~~GGdVQvipiSAl 299 (683)
T KOG1145|consen 229 VLVVAADDGVMPQTLEAI--------KHAKSANVPIVVAINKIDKPGA-NPEKVKRELLSQGIVVEDLGGDVQVIPISAL 299 (683)
T ss_pred EEEEEccCCccHhHHHHH--------HHHHhcCCCEEEEEeccCCCCC-CHHHHHHHHHHcCccHHHcCCceeEEEeecc
Confidence 999999764 333322 2233478999999999997765 45555555543222 2356899999999
Q ss_pred cCCCHHHHHHHHHHHH
Q 029446 162 KGDGLYEGLDWLASTL 177 (193)
Q Consensus 162 ~~~gi~~~~~~l~~~~ 177 (193)
+|+|++.+.+.+.-..
T Consensus 300 ~g~nl~~L~eaill~A 315 (683)
T KOG1145|consen 300 TGENLDLLEEAILLLA 315 (683)
T ss_pred cCCChHHHHHHHHHHH
Confidence 9999999998877654
No 259
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.70 E-value=4.8e-16 Score=121.61 Aligned_cols=155 Identities=25% Similarity=0.183 Sum_probs=112.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccccccccceeE----EEEEE---cCEEEEEEecCCCCCCHHhHHhhhcCCCE
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNV----EKVQY---KNVIFTVWDVGGQEKLRPLWRHYFNNTDG 87 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~----~~~~~---~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 87 (193)
.+++-|.++|+..-|||||+..+........ ..-|++. +.+.. ..-.+.+.|||||+.|..++....+-+|.
T Consensus 3 ~R~PvVtimGHVDHGKTtLLD~IR~t~Va~~-EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDI 81 (509)
T COG0532 3 LRPPVVTIMGHVDHGKTTLLDKIRKTNVAAG-EAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDI 81 (509)
T ss_pred CCCCEEEEeCcccCCccchhhhHhcCccccc-cCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccE
Confidence 4678899999999999999999987766532 1222222 23333 23589999999999999999888899999
Q ss_pred EEEEEECCCh---hhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcC----CCCceEEEEecc
Q 029446 88 LIYVVDSLDR---ERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDL----KNRKWHIQGTCA 160 (193)
Q Consensus 88 ~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~~~~~Sa 160 (193)
++||+++++. ++.+++ ... ...+.|+|+++||+|..+. .+..+..++....+ -.....++++||
T Consensus 82 aILVVa~dDGv~pQTiEAI----~ha----k~a~vP~iVAiNKiDk~~~-np~~v~~el~~~gl~~E~~gg~v~~VpvSA 152 (509)
T COG0532 82 AILVVAADDGVMPQTIEAI----NHA----KAAGVPIVVAINKIDKPEA-NPDKVKQELQEYGLVPEEWGGDVIFVPVSA 152 (509)
T ss_pred EEEEEEccCCcchhHHHHH----HHH----HHCCCCEEEEEecccCCCC-CHHHHHHHHHHcCCCHhhcCCceEEEEeec
Confidence 9999999864 433332 122 2268999999999999864 33344333332211 124478999999
Q ss_pred ccCCCHHHHHHHHHHHHHh
Q 029446 161 LKGDGLYEGLDWLASTLKE 179 (193)
Q Consensus 161 ~~~~gi~~~~~~l~~~~~~ 179 (193)
++|+|+++|+..+.-...-
T Consensus 153 ~tg~Gi~eLL~~ill~aev 171 (509)
T COG0532 153 KTGEGIDELLELILLLAEV 171 (509)
T ss_pred cCCCCHHHHHHHHHHHHHH
Confidence 9999999999988765543
No 260
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.69 E-value=1.6e-15 Score=117.27 Aligned_cols=167 Identities=17% Similarity=0.110 Sum_probs=110.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCcccccc----ccceeEEEEEEcCEEEEEEecCCCCC--C-------HHhHHhhh
Q 029446 16 SEMRVVMLGLDAAGKTTILYKLHIGEVLSTVP----TIGFNVEKVQYKNVIFTVWDVGGQEK--L-------RPLWRHYF 82 (193)
Q Consensus 16 ~~~~v~v~G~~~~GKssli~~l~~~~~~~~~~----t~~~~~~~~~~~~~~~~i~D~~g~~~--~-------~~~~~~~~ 82 (193)
..++|+|+|.||+|||||+|.|.+.+.....| |-+.-...++.+++.+.+.||+|--+ . -......+
T Consensus 267 ~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~~ 346 (531)
T KOG1191|consen 267 SGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARKRI 346 (531)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHHHH
Confidence 55999999999999999999999998765444 33444556778999999999999332 1 11123445
Q ss_pred cCCCEEEEEEECC--ChhhHHHHHHHHHHHHc-----CCCCCCCeEEEEEeCCCCCCCCCHhHH-HhhhCCCcCCCCceE
Q 029446 83 NNTDGLIYVVDSL--DRERIGKAKQEFQAIIK-----DPFMLNSVILVFANKQDMKGAMTPMEV-CEGLGLFDLKNRKWH 154 (193)
Q Consensus 83 ~~~d~~i~v~d~~--~~~s~~~~~~~~~~~~~-----~~~~~~~p~ivv~nK~Dl~~~~~~~~~-~~~~~~~~~~~~~~~ 154 (193)
..+|++++|+|+. +-.+-..+...+...-. -+.....|+|++.||+|+......... ...+-........-.
T Consensus 347 ~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~~~~~~~~i 426 (531)
T KOG1191|consen 347 ERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSAEGRSVFPI 426 (531)
T ss_pred hhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceeccccccCcccce
Confidence 7899999999993 33333333333333321 123345789999999999876221111 111110011112223
Q ss_pred EEEeccccCCCHHHHHHHHHHHHHhhhc
Q 029446 155 IQGTCALKGDGLYEGLDWLASTLKEMRA 182 (193)
Q Consensus 155 ~~~~Sa~~~~gi~~~~~~l~~~~~~~~~ 182 (193)
+.++|+++++|++.+.+.+.+.+...+.
T Consensus 427 ~~~vs~~tkeg~~~L~~all~~~~~~~~ 454 (531)
T KOG1191|consen 427 VVEVSCTTKEGCERLSTALLNIVERLVV 454 (531)
T ss_pred EEEeeechhhhHHHHHHHHHHHHHHhhc
Confidence 6669999999999999999998876654
No 261
>PRK12739 elongation factor G; Reviewed
Probab=99.67 E-value=2.4e-15 Score=125.36 Aligned_cols=115 Identities=18% Similarity=0.159 Sum_probs=85.4
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcC--C---c---c-------------ccccccceeEEEEEEcCEEEEEEecCCCC
Q 029446 14 GNSEMRVVMLGLDAAGKTTILYKLHIG--E---V---L-------------STVPTIGFNVEKVQYKNVIFTVWDVGGQE 72 (193)
Q Consensus 14 ~~~~~~v~v~G~~~~GKssli~~l~~~--~---~---~-------------~~~~t~~~~~~~~~~~~~~~~i~D~~g~~ 72 (193)
..+..+|+|+|++++|||||+++|+.. . . . ....|.......+.+++.++.++||||+.
T Consensus 5 ~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~ 84 (691)
T PRK12739 5 LEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHV 84 (691)
T ss_pred ccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHH
Confidence 346679999999999999999999642 0 0 0 11234455566777789999999999998
Q ss_pred CCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 029446 73 KLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA 133 (193)
Q Consensus 73 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 133 (193)
.+...+...++.+|++++|+|+.+...-+.. ..+..+ .. .++|.|+++||+|+...
T Consensus 85 ~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~-~i~~~~-~~---~~~p~iv~iNK~D~~~~ 140 (691)
T PRK12739 85 DFTIEVERSLRVLDGAVAVFDAVSGVEPQSE-TVWRQA-DK---YGVPRIVFVNKMDRIGA 140 (691)
T ss_pred HHHHHHHHHHHHhCeEEEEEeCCCCCCHHHH-HHHHHH-HH---cCCCEEEEEECCCCCCC
Confidence 8888888889999999999999865432221 223332 22 46899999999998854
No 262
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.67 E-value=1.8e-15 Score=115.15 Aligned_cols=135 Identities=24% Similarity=0.365 Sum_probs=103.9
Q ss_pred cccceeEEEEEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCCh----------hhHHHHHHHHHHHHcCCCC
Q 029446 47 PTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDR----------ERIGKAKQEFQAIIKDPFM 116 (193)
Q Consensus 47 ~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~~ 116 (193)
+|.|+....+.+++..+.+||++|+...+..|..++.+++++++|+|+++- ..+.+....+..++.....
T Consensus 147 ~T~Gi~~~~f~~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~ 226 (317)
T cd00066 147 KTTGIVETKFTIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWF 226 (317)
T ss_pred ccCCeeEEEEEecceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccc
Confidence 455677777778889999999999999999999999999999999999863 5788888888888888777
Q ss_pred CCCeEEEEEeCCCCCCC------------------CCHhHH----HhhhCCCcC-CCCceEEEEeccccCCCHHHHHHHH
Q 029446 117 LNSVILVFANKQDMKGA------------------MTPMEV----CEGLGLFDL-KNRKWHIQGTCALKGDGLYEGLDWL 173 (193)
Q Consensus 117 ~~~p~ivv~nK~Dl~~~------------------~~~~~~----~~~~~~~~~-~~~~~~~~~~Sa~~~~gi~~~~~~l 173 (193)
.+.|+++++||.|+..+ .+.++. ...+..... ..+.+.+..++|.+-.++..+|+.+
T Consensus 227 ~~~pill~~NK~D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v 306 (317)
T cd00066 227 ANTSIILFLNKKDLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAV 306 (317)
T ss_pred cCCCEEEEccChHHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHH
Confidence 89999999999996531 111111 111111111 2356677889999999999999999
Q ss_pred HHHHHhhh
Q 029446 174 ASTLKEMR 181 (193)
Q Consensus 174 ~~~~~~~~ 181 (193)
.+.+....
T Consensus 307 ~~~i~~~~ 314 (317)
T cd00066 307 KDIILQNN 314 (317)
T ss_pred HHHHHHHH
Confidence 98887554
No 263
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.67 E-value=9.9e-16 Score=118.02 Aligned_cols=154 Identities=17% Similarity=0.184 Sum_probs=113.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCc-----------cc---cccccceeE----EEEEE-----cCEEEEEEecCCCCCC
Q 029446 18 MRVVMLGLDAAGKTTILYKLHIGEV-----------LS---TVPTIGFNV----EKVQY-----KNVIFTVWDVGGQEKL 74 (193)
Q Consensus 18 ~~v~v~G~~~~GKssli~~l~~~~~-----------~~---~~~t~~~~~----~~~~~-----~~~~~~i~D~~g~~~~ 74 (193)
=++.++.+-.-|||||..++....- -+ .....|+++ .++.+ ..+.+.++|||||.+|
T Consensus 10 RNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDF 89 (603)
T COG0481 10 RNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF 89 (603)
T ss_pred cceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccce
Confidence 3678899999999999999976321 01 111223332 23333 4589999999999999
Q ss_pred HHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH---hHHHhhhCCCcCCCC
Q 029446 75 RPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP---MEVCEGLGLFDLKNR 151 (193)
Q Consensus 75 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~---~~~~~~~~~~~~~~~ 151 (193)
.-..+..+..|.++++++|++..-.-+.+...+..+- .+..+|.|+||+||+..+.. +++.+.+++...
T Consensus 90 sYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle-----~~LeIiPViNKIDLP~Adpervk~eIe~~iGid~~--- 161 (603)
T COG0481 90 SYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE-----NNLEIIPVLNKIDLPAADPERVKQEIEDIIGIDAS--- 161 (603)
T ss_pred EEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHH-----cCcEEEEeeecccCCCCCHHHHHHHHHHHhCCCcc---
Confidence 8888888899999999999987655555655565553 46779999999999986432 345555554322
Q ss_pred ceEEEEeccccCCCHHHHHHHHHHHHHhhh
Q 029446 152 KWHIQGTCALKGDGLYEGLDWLASTLKEMR 181 (193)
Q Consensus 152 ~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~ 181 (193)
..+.+||++|.||+++++.|++.++.-.
T Consensus 162 --dav~~SAKtG~gI~~iLe~Iv~~iP~P~ 189 (603)
T COG0481 162 --DAVLVSAKTGIGIEDVLEAIVEKIPPPK 189 (603)
T ss_pred --hheeEecccCCCHHHHHHHHHhhCCCCC
Confidence 4789999999999999999999987554
No 264
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.66 E-value=3e-15 Score=114.86 Aligned_cols=134 Identities=22% Similarity=0.352 Sum_probs=103.6
Q ss_pred ccceeEEEEEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCC----------hhhHHHHHHHHHHHHcCCCCC
Q 029446 48 TIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD----------RERIGKAKQEFQAIIKDPFML 117 (193)
Q Consensus 48 t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~ 117 (193)
|+|+....+.+++..+.+||.+|+...+..|..++.++++++||+|+++ ...+.+....+..+++.....
T Consensus 171 T~Gi~~~~f~~~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~ 250 (342)
T smart00275 171 TTGIQETAFIVKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFA 250 (342)
T ss_pred ccceEEEEEEECCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCcccc
Confidence 4566677777788999999999999999999999999999999999986 356888888899998887788
Q ss_pred CCeEEEEEeCCCCCCC-----------------CCHhH----HHhhhCCCcC--CCCceEEEEeccccCCCHHHHHHHHH
Q 029446 118 NSVILVFANKQDMKGA-----------------MTPME----VCEGLGLFDL--KNRKWHIQGTCALKGDGLYEGLDWLA 174 (193)
Q Consensus 118 ~~p~ivv~nK~Dl~~~-----------------~~~~~----~~~~~~~~~~--~~~~~~~~~~Sa~~~~gi~~~~~~l~ 174 (193)
+.|+++++||.|+..+ .+..+ +...+..... ..+.+.+..++|.+-.++..+|+.+.
T Consensus 251 ~~piil~~NK~D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~ 330 (342)
T smart00275 251 NTSIILFLNKIDLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVK 330 (342)
T ss_pred CCcEEEEEecHHhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHH
Confidence 9999999999998641 01111 1122211111 23456778899999999999999988
Q ss_pred HHHHhhh
Q 029446 175 STLKEMR 181 (193)
Q Consensus 175 ~~~~~~~ 181 (193)
+.+....
T Consensus 331 ~~I~~~~ 337 (342)
T smart00275 331 DIILQRN 337 (342)
T ss_pred HHHHHHH
Confidence 8877544
No 265
>PRK12740 elongation factor G; Reviewed
Probab=99.66 E-value=4.4e-15 Score=123.72 Aligned_cols=106 Identities=20% Similarity=0.209 Sum_probs=79.6
Q ss_pred EcCCCCCHHHHHHHHhcCCc--------------c-------ccccccceeEEEEEEcCEEEEEEecCCCCCCHHhHHhh
Q 029446 23 LGLDAAGKTTILYKLHIGEV--------------L-------STVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHY 81 (193)
Q Consensus 23 ~G~~~~GKssli~~l~~~~~--------------~-------~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~ 81 (193)
+|++++|||||+++|....- . +...|++.....+.+.+..+.+|||||+..+...+..+
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~ 80 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA 80 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence 59999999999999943210 0 11334555566777889999999999999888888888
Q ss_pred hcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 029446 82 FNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA 133 (193)
Q Consensus 82 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 133 (193)
+..+|++++|+|++........ ..+..+.. .+.|+++|+||+|+...
T Consensus 81 l~~aD~vllvvd~~~~~~~~~~-~~~~~~~~----~~~p~iiv~NK~D~~~~ 127 (668)
T PRK12740 81 LRVLDGAVVVVCAVGGVEPQTE-TVWRQAEK----YGVPRIIFVNKMDRAGA 127 (668)
T ss_pred HHHhCeEEEEEeCCCCcCHHHH-HHHHHHHH----cCCCEEEEEECCCCCCC
Confidence 9999999999999876554433 23333322 46899999999998754
No 266
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.66 E-value=4.3e-16 Score=112.72 Aligned_cols=164 Identities=21% Similarity=0.300 Sum_probs=113.3
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc---ccccccee-EEEEEEcCEEEEEEecCCCCC-------CHHhHHhhh
Q 029446 14 GNSEMRVVMLGLDAAGKTTILYKLHIGEVLS---TVPTIGFN-VEKVQYKNVIFTVWDVGGQEK-------LRPLWRHYF 82 (193)
Q Consensus 14 ~~~~~~v~v~G~~~~GKssli~~l~~~~~~~---~~~t~~~~-~~~~~~~~~~~~i~D~~g~~~-------~~~~~~~~~ 82 (193)
...+++|+++|..|+||||+||+++++...+ .+.+..+. +....+....+.+||+||-.+ ++.....++
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~D~~~r~~~~d~l 115 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKDKDAEHRQLYRDYL 115 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccccceEEecCCCcccchhhhHHHHHHHHHHh
Confidence 4578999999999999999999999765543 23233222 333445567899999999444 777888899
Q ss_pred cCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC----------CH--hHHHhhh-C-CCcC
Q 029446 83 NNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM----------TP--MEVCEGL-G-LFDL 148 (193)
Q Consensus 83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~----------~~--~~~~~~~-~-~~~~ 148 (193)
...|.+++++++.++. +..-..++.+++... .+.|+++++|.+|...+. +. ++..++. . ....
T Consensus 116 ~~~DLvL~l~~~~dra-L~~d~~f~~dVi~~~--~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~ 192 (296)
T COG3596 116 PKLDLVLWLIKADDRA-LGTDEDFLRDVIILG--LDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGRL 192 (296)
T ss_pred hhccEEEEeccCCCcc-ccCCHHHHHHHHHhc--cCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999998764 333445666666542 358899999999976541 10 1110000 0 0000
Q ss_pred CCCceEEEEeccccCCCHHHHHHHHHHHHHhh
Q 029446 149 KNRKWHIQGTCALKGDGLYEGLDWLASTLKEM 180 (193)
Q Consensus 149 ~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~ 180 (193)
-..-.|++..+.+.++|++.+...++..+...
T Consensus 193 ~q~V~pV~~~~~r~~wgl~~l~~ali~~lp~e 224 (296)
T COG3596 193 FQEVKPVVAVSGRLPWGLKELVRALITALPVE 224 (296)
T ss_pred HhhcCCeEEeccccCccHHHHHHHHHHhCccc
Confidence 11123788888999999999999999988743
No 267
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.65 E-value=6.2e-15 Score=114.91 Aligned_cols=78 Identities=26% Similarity=0.340 Sum_probs=55.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcc--cc-ccccceeEEEEE------------------------EcCEEEEEEecCC
Q 029446 18 MRVVMLGLDAAGKTTILYKLHIGEVL--ST-VPTIGFNVEKVQ------------------------YKNVIFTVWDVGG 70 (193)
Q Consensus 18 ~~v~v~G~~~~GKssli~~l~~~~~~--~~-~~t~~~~~~~~~------------------------~~~~~~~i~D~~g 70 (193)
++|+++|.||+|||||+|+|++.... .+ ..|...+..... .....+++||+||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 68999999999999999999987654 22 233333332221 1236799999999
Q ss_pred C----CCCHHhHHhh---hcCCCEEEEEEECC
Q 029446 71 Q----EKLRPLWRHY---FNNTDGLIYVVDSL 95 (193)
Q Consensus 71 ~----~~~~~~~~~~---~~~~d~~i~v~d~~ 95 (193)
- .....+...+ ++++|++++|+|+.
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 3 3333333333 78999999999996
No 268
>PRK00007 elongation factor G; Reviewed
Probab=99.65 E-value=7.7e-15 Score=122.31 Aligned_cols=115 Identities=19% Similarity=0.159 Sum_probs=83.1
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhc--CCc------c-------------ccccccceeEEEEEEcCEEEEEEecCCCC
Q 029446 14 GNSEMRVVMLGLDAAGKTTILYKLHI--GEV------L-------------STVPTIGFNVEKVQYKNVIFTVWDVGGQE 72 (193)
Q Consensus 14 ~~~~~~v~v~G~~~~GKssli~~l~~--~~~------~-------------~~~~t~~~~~~~~~~~~~~~~i~D~~g~~ 72 (193)
..+.-+|+|+|++++|||||+++|+. +.. . ....|.......+.+.+..+.++||||+.
T Consensus 7 ~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~ 86 (693)
T PRK00007 7 LERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHV 86 (693)
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcH
Confidence 34566999999999999999999963 110 0 11233334455677788999999999998
Q ss_pred CCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 029446 73 KLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA 133 (193)
Q Consensus 73 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 133 (193)
.+.......+..+|++++|+|+.....-+.. ..+..+.. .++|.|+++||+|+...
T Consensus 87 ~f~~ev~~al~~~D~~vlVvda~~g~~~qt~-~~~~~~~~----~~~p~iv~vNK~D~~~~ 142 (693)
T PRK00007 87 DFTIEVERSLRVLDGAVAVFDAVGGVEPQSE-TVWRQADK----YKVPRIAFVNKMDRTGA 142 (693)
T ss_pred HHHHHHHHHHHHcCEEEEEEECCCCcchhhH-HHHHHHHH----cCCCEEEEEECCCCCCC
Confidence 8877777788999999999999765333322 22333322 46889999999998753
No 269
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.64 E-value=9.8e-16 Score=114.43 Aligned_cols=140 Identities=13% Similarity=0.155 Sum_probs=83.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCcccc-----------ccccceeEEE--EEEcC--EEEEEEecCCCCCCHH---
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHIGEVLST-----------VPTIGFNVEK--VQYKN--VIFTVWDVGGQEKLRP--- 76 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~~~-----------~~t~~~~~~~--~~~~~--~~~~i~D~~g~~~~~~--- 76 (193)
.-.++|+++|.+|+|||||+|++++..+... .+|+...... +..++ +++.+|||||-.....
T Consensus 2 g~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~ 81 (276)
T cd01850 2 GFQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSD 81 (276)
T ss_pred CcEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchh
Confidence 3578999999999999999999999876422 2343333332 23333 6899999999332210
Q ss_pred -----------------------hHHhhhc--CCCEEEEEEECCChhhHHHH-HHHHHHHHcCCCCCCCeEEEEEeCCCC
Q 029446 77 -----------------------LWRHYFN--NTDGLIYVVDSLDRERIGKA-KQEFQAIIKDPFMLNSVILVFANKQDM 130 (193)
Q Consensus 77 -----------------------~~~~~~~--~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ivv~nK~Dl 130 (193)
.+...+. .+|+++++++.+.. .+... ...+..+ . ...|+|+|+||+|+
T Consensus 82 ~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~-~l~~~D~~~lk~l-~----~~v~vi~VinK~D~ 155 (276)
T cd01850 82 CWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGH-GLKPLDIEFMKRL-S----KRVNIIPVIAKADT 155 (276)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCC-CCCHHHHHHHHHH-h----ccCCEEEEEECCCc
Confidence 0101222 47889999988742 22222 2333333 2 25889999999998
Q ss_pred CCCCCHhHHHhhhCCCcCCCCceEEEEeccc
Q 029446 131 KGAMTPMEVCEGLGLFDLKNRKWHIQGTCAL 161 (193)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (193)
....+.....+.. ...++..++++|.+...
T Consensus 156 l~~~e~~~~k~~i-~~~l~~~~i~~~~~~~~ 185 (276)
T cd01850 156 LTPEELKEFKQRI-MEDIEEHNIKIYKFPED 185 (276)
T ss_pred CCHHHHHHHHHHH-HHHHHHcCCceECCCCC
Confidence 7643322222211 12234455677776643
No 270
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.62 E-value=3.9e-15 Score=113.22 Aligned_cols=152 Identities=20% Similarity=0.225 Sum_probs=100.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCC--cc-------------------------c-------cccccceeEEEEEEcC
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHIGE--VL-------------------------S-------TVPTIGFNVEKVQYKN 60 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~~~--~~-------------------------~-------~~~t~~~~~~~~~~~~ 60 (193)
...++++++|+..+|||||+-+|+-.. +. + .+-|+......+....
T Consensus 5 Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k 84 (428)
T COG5256 5 KPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDK 84 (428)
T ss_pred CCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCC
Confidence 457899999999999999999886421 00 0 0123333333444467
Q ss_pred EEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCChh---h--HHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC
Q 029446 61 VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE---R--IGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT 135 (193)
Q Consensus 61 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s--~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 135 (193)
..+.|.|+||+..|-.........+|++|+|+|+.+.+ + ...+......+.+... -.-+||++||+|+.+.++
T Consensus 85 ~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlG--i~~lIVavNKMD~v~wde 162 (428)
T COG5256 85 YNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLG--IKQLIVAVNKMDLVSWDE 162 (428)
T ss_pred ceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcC--CceEEEEEEcccccccCH
Confidence 88999999999999999888889999999999998652 1 1112222222222211 234899999999998543
Q ss_pred H--hHHHhhhCC----CcCCCCceEEEEeccccCCCHHH
Q 029446 136 P--MEVCEGLGL----FDLKNRKWHIQGTCALKGDGLYE 168 (193)
Q Consensus 136 ~--~~~~~~~~~----~~~~~~~~~~~~~Sa~~~~gi~~ 168 (193)
. +++...+.. .-....+++|+++|+..|+|+.+
T Consensus 163 ~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~ 201 (428)
T COG5256 163 ERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTK 201 (428)
T ss_pred HHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccc
Confidence 2 333332221 11233467899999999998765
No 271
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.61 E-value=4.3e-16 Score=114.49 Aligned_cols=111 Identities=23% Similarity=0.228 Sum_probs=86.0
Q ss_pred CCCHHhHHhhhcCCCEEEEEEECCChh-hHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHh-HHHhhhCCCcCC
Q 029446 72 EKLRPLWRHYFNNTDGLIYVVDSLDRE-RIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPM-EVCEGLGLFDLK 149 (193)
Q Consensus 72 ~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~-~~~~~~~~~~~~ 149 (193)
+++..+.+.++.++|++++|+|++++. ++..+..|+..+.. .++|+++|+||+|+.+..... +..+.+ +
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~----~~i~~vIV~NK~DL~~~~~~~~~~~~~~-----~ 94 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA----QNIEPIIVLNKIDLLDDEDMEKEQLDIY-----R 94 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CCCCEEEEEECcccCCCHHHHHHHHHHH-----H
Confidence 667777778899999999999999887 89898888876532 578999999999997542221 222222 2
Q ss_pred CCceEEEEeccccCCCHHHHHHHHHHHHHhhhccCCCCCCcCCC
Q 029446 150 NRKWHIQGTCALKGDGLYEGLDWLASTLKEMRAAGYSSVGTSSF 193 (193)
Q Consensus 150 ~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~~~~~~~~~~~~~ 193 (193)
..+++++++||++++|++++++.+.+.+ ....|.+++|||||
T Consensus 95 ~~g~~v~~~SAktg~gi~eLf~~l~~~~--~~~~G~sgvGKStL 136 (245)
T TIGR00157 95 NIGYQVLMTSSKNQDGLKELIEALQNRI--SVFAGQSGVGKSSL 136 (245)
T ss_pred HCCCeEEEEecCCchhHHHHHhhhcCCE--EEEECCCCCCHHHH
Confidence 3567899999999999999999887643 33459999999975
No 272
>PRK13768 GTPase; Provisional
Probab=99.59 E-value=8.7e-15 Score=108.15 Aligned_cols=117 Identities=15% Similarity=0.103 Sum_probs=73.7
Q ss_pred EEEEEEecCCCCCCH---HhHHhhhc---C--CCEEEEEEECCChhhHHH-HHHHHHHHHcCCCCCCCeEEEEEeCCCCC
Q 029446 61 VIFTVWDVGGQEKLR---PLWRHYFN---N--TDGLIYVVDSLDRERIGK-AKQEFQAIIKDPFMLNSVILVFANKQDMK 131 (193)
Q Consensus 61 ~~~~i~D~~g~~~~~---~~~~~~~~---~--~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 131 (193)
..+.+||+||+.+.. ..+..+.+ . .+++++++|+........ ...++....... ..+.|+++|+||+|+.
T Consensus 97 ~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~-~~~~~~i~v~nK~D~~ 175 (253)
T PRK13768 97 ADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQL-RLGLPQIPVLNKADLL 175 (253)
T ss_pred CCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHH-HcCCCEEEEEEhHhhc
Confidence 379999999976643 33322222 3 899999999965432222 222222211110 1478999999999998
Q ss_pred CCCCHhHHHhhhCC--------C---------------cCC--CCceEEEEeccccCCCHHHHHHHHHHHHH
Q 029446 132 GAMTPMEVCEGLGL--------F---------------DLK--NRKWHIQGTCALKGDGLYEGLDWLASTLK 178 (193)
Q Consensus 132 ~~~~~~~~~~~~~~--------~---------------~~~--~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~ 178 (193)
+..+.++..+.+.. . .++ ....+++++|+++++|++++.++|.+.+.
T Consensus 176 ~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~ 247 (253)
T PRK13768 176 SEEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFC 247 (253)
T ss_pred CchhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcC
Confidence 76554443332221 0 011 12357899999999999999999988773
No 273
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.59 E-value=6e-14 Score=106.59 Aligned_cols=157 Identities=15% Similarity=0.145 Sum_probs=99.8
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcC----Cc--c--cccccc-------------------cee-EEE----------
Q 029446 14 GNSEMRVVMLGLDAAGKTTILYKLHIG----EV--L--STVPTI-------------------GFN-VEK---------- 55 (193)
Q Consensus 14 ~~~~~~v~v~G~~~~GKssli~~l~~~----~~--~--~~~~t~-------------------~~~-~~~---------- 55 (193)
....+.|.|.|.+|+|||||++.+... .. . ...|.. ... +..
T Consensus 53 ~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~~~~gallgd~~r~~~~~~~~~~~~r~~~~~~~l~~ 132 (332)
T PRK09435 53 TGNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTRTGGSILGDKTRMERLSRHPNAFIRPSPSSGTLGG 132 (332)
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCccccchhhhchHhHHHhhcCCCCeEEEecCCcccccc
Confidence 467899999999999999999987531 10 0 000100 001 111
Q ss_pred -----------EEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEE
Q 029446 56 -----------VQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVF 124 (193)
Q Consensus 56 -----------~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv 124 (193)
+...+..+.+.||+|....... ....+|.++++.+......++.......++ .-|+|
T Consensus 133 ~a~~~~~~~~~~~~~g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k~gi~E~---------aDIiV 200 (332)
T PRK09435 133 VARKTRETMLLCEAAGYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIKKGIMEL---------ADLIV 200 (332)
T ss_pred hHHHHHHHHHHHhccCCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHHhhhhhh---------hheEE
Confidence 1112578999999996643333 356799999998755555555544322222 13899
Q ss_pred EeCCCCCCCCCH----hHHHhhhCCCcC--CCCceEEEEeccccCCCHHHHHHHHHHHHHhhhc
Q 029446 125 ANKQDMKGAMTP----MEVCEGLGLFDL--KNRKWHIQGTCALKGDGLYEGLDWLASTLKEMRA 182 (193)
Q Consensus 125 ~nK~Dl~~~~~~----~~~~~~~~~~~~--~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~~ 182 (193)
+||+|+.+.... .++...+....- ..+..+++.+||+++.|++++++.|.+++.....
T Consensus 201 VNKaDl~~~~~a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~~l~~ 264 (332)
T PRK09435 201 INKADGDNKTAARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRAALTA 264 (332)
T ss_pred eehhcccchhHHHHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhcc
Confidence 999998875432 334444443211 1244589999999999999999999998764443
No 274
>PRK09866 hypothetical protein; Provisional
Probab=99.59 E-value=8.7e-14 Score=111.92 Aligned_cols=113 Identities=16% Similarity=0.092 Sum_probs=71.8
Q ss_pred EEEEEEecCCCCC-----CHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC
Q 029446 61 VIFTVWDVGGQEK-----LRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT 135 (193)
Q Consensus 61 ~~~~i~D~~g~~~-----~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 135 (193)
.++.+.||||-.. ........+..+|+++||+|+++..+... ..+.+.++... ...|+|+|+||+|+.+...
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D--eeIlk~Lkk~~-K~~PVILVVNKIDl~dree 306 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD--EEVREAILAVG-QSVPLYVLVNKFDQQDRNS 306 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH--HHHHHHHHhcC-CCCCEEEEEEcccCCCccc
Confidence 5789999999543 12234457899999999999987433332 22233333211 2359999999999865322
Q ss_pred --HhHHHhhhCCC--cCCCCceEEEEeccccCCCHHHHHHHHHHH
Q 029446 136 --PMEVCEGLGLF--DLKNRKWHIQGTCALKGDGLYEGLDWLAST 176 (193)
Q Consensus 136 --~~~~~~~~~~~--~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~ 176 (193)
.+.+....... ...-....++++||+.|.|++++++.|.++
T Consensus 307 ddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~~ 351 (741)
T PRK09866 307 DDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELANN 351 (741)
T ss_pred chHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHhC
Confidence 33333322100 001112369999999999999999999873
No 275
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.57 E-value=4.1e-15 Score=115.25 Aligned_cols=165 Identities=15% Similarity=0.140 Sum_probs=115.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCcc--cc-ccccceeEEEEEEcCEEEEEEecCCCCC---C-----HHhHHhhh-
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHIGEVL--ST-VPTIGFNVEKVQYKNVIFTVWDVGGQEK---L-----RPLWRHYF- 82 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~--~~-~~t~~~~~~~~~~~~~~~~i~D~~g~~~---~-----~~~~~~~~- 82 (193)
...-.++|+|.||+|||||+|.++..... .| .+|.+.-...+.++-..+++.||||--+ - ......++
T Consensus 166 p~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IEmqsITALA 245 (620)
T KOG1490|consen 166 PNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIITALA 245 (620)
T ss_pred CCcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhhheeeeeecCCccccCcchhhhhHHHHHHHHHHH
Confidence 35568899999999999999999887654 33 4666677777888889999999999211 1 11111222
Q ss_pred cCCCEEEEEEECCChh--hHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEecc
Q 029446 83 NNTDGLIYVVDSLDRE--RIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCA 160 (193)
Q Consensus 83 ~~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (193)
+---+++|+.|++..+ |..+....+..+.. -+.+.|.|+|+||+|+....+..+..+++-.......+++++++|+
T Consensus 246 HLraaVLYfmDLSe~CGySva~QvkLfhsIKp--LFaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~tS~ 323 (620)
T KOG1490|consen 246 HLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKP--LFANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQTSC 323 (620)
T ss_pred HhhhhheeeeechhhhCCCHHHHHHHHHHhHH--HhcCCceEEEeecccccCccccCHHHHHHHHHHHhccCceEEEecc
Confidence 2346788999998654 56666666666644 3468999999999998876555444433322223445579999999
Q ss_pred ccCCCHHHHHHHHHHHHHhhh
Q 029446 161 LKGDGLYEGLDWLASTLKEMR 181 (193)
Q Consensus 161 ~~~~gi~~~~~~l~~~~~~~~ 181 (193)
.+.+|+.++-..-++.+...+
T Consensus 324 ~~eegVm~Vrt~ACe~LLa~R 344 (620)
T KOG1490|consen 324 VQEEGVMDVRTTACEALLAAR 344 (620)
T ss_pred cchhceeeHHHHHHHHHHHHH
Confidence 999999887776666655444
No 276
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=99.57 E-value=2.4e-14 Score=103.50 Aligned_cols=166 Identities=17% Similarity=0.179 Sum_probs=106.1
Q ss_pred hhHHHHhhhhcCCCccEEEEEcCCCCCHHHHHHHHhcCCc-----c------cccccc------------------ceeE
Q 029446 3 QAFRKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEV-----L------STVPTI------------------GFNV 53 (193)
Q Consensus 3 ~~~~~~~~~~~~~~~~~v~v~G~~~~GKssli~~l~~~~~-----~------~~~~t~------------------~~~~ 53 (193)
++++++|+. ..+.+.|.|.|+||+|||||++.|...-. . ++.|-. ++.+
T Consensus 17 ~ll~~l~~~--~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfI 94 (266)
T PF03308_consen 17 ELLKRLYPH--TGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFI 94 (266)
T ss_dssp HHHHHHGGG--TT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEE
T ss_pred HHHHHHHhh--cCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEE
Confidence 456777763 45789999999999999999999864210 0 011111 1222
Q ss_pred EEEEE--------------------cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcC
Q 029446 54 EKVQY--------------------KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKD 113 (193)
Q Consensus 54 ~~~~~--------------------~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~ 113 (193)
..+.- .+..+.+++|.|--+..... ..-+|.+++|..+.-.+.++.++.-+.++..
T Consensus 95 RS~atRG~lGGls~~t~~~v~ll~aaG~D~IiiETVGvGQsE~~I---~~~aD~~v~v~~Pg~GD~iQ~~KaGimEiaD- 170 (266)
T PF03308_consen 95 RSMATRGSLGGLSRATRDAVRLLDAAGFDVIIIETVGVGQSEVDI---ADMADTVVLVLVPGLGDEIQAIKAGIMEIAD- 170 (266)
T ss_dssp EEE---SSHHHHHHHHHHHHHHHHHTT-SEEEEEEESSSTHHHHH---HTTSSEEEEEEESSTCCCCCTB-TTHHHH-S-
T ss_pred eecCcCCCCCCccHhHHHHHHHHHHcCCCEEEEeCCCCCccHHHH---HHhcCeEEEEecCCCccHHHHHhhhhhhhcc-
Confidence 22211 26789999999854444332 3569999999999888888888877777742
Q ss_pred CCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCc--CCCCceEEEEeccccCCCHHHHHHHHHHHHHhhhc
Q 029446 114 PFMLNSVILVFANKQDMKGAMT-PMEVCEGLGLFD--LKNRKWHIQGTCALKGDGLYEGLDWLASTLKEMRA 182 (193)
Q Consensus 114 ~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~~ 182 (193)
|+|+||.|...... ..++...+.+.. ...+..|++.|||.+++|++++++.|.++......
T Consensus 171 --------i~vVNKaD~~gA~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~~l~~ 234 (266)
T PF03308_consen 171 --------IFVVNKADRPGADRTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHRDYLKE 234 (266)
T ss_dssp --------EEEEE--SHHHHHHHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHHHHHHH
T ss_pred --------EEEEeCCChHHHHHHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Confidence 89999999655422 234444443322 23466789999999999999999999987765544
No 277
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.55 E-value=1.3e-14 Score=105.99 Aligned_cols=112 Identities=14% Similarity=0.075 Sum_probs=60.7
Q ss_pred EEEEEecCCCCCCHHhHHhhh--------cCCCEEEEEEECCChh---hHHHHH-HHHHHHHcCCCCCCCeEEEEEeCCC
Q 029446 62 IFTVWDVGGQEKLRPLWRHYF--------NNTDGLIYVVDSLDRE---RIGKAK-QEFQAIIKDPFMLNSVILVFANKQD 129 (193)
Q Consensus 62 ~~~i~D~~g~~~~~~~~~~~~--------~~~d~~i~v~d~~~~~---s~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D 129 (193)
.+.++|||||.++...+.... ...-++++++|+.... .|-... ....-..+ .+.|.|.|+||+|
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~----~~lP~vnvlsK~D 167 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLR----LELPHVNVLSKID 167 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHH----HTSEEEEEE--GG
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhh----CCCCEEEeeeccC
Confidence 799999999999877665554 4567889999986433 232221 11111111 4799999999999
Q ss_pred CCCCC---------C-----------HhHHHhhhCCCcCCCCce-EEEEeccccCCCHHHHHHHHHHHH
Q 029446 130 MKGAM---------T-----------PMEVCEGLGLFDLKNRKW-HIQGTCALKGDGLYEGLDWLASTL 177 (193)
Q Consensus 130 l~~~~---------~-----------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~~~~~l~~~~ 177 (193)
+.+.. + .....+.+......-... .++++|+.+++|+++++..+-+.+
T Consensus 168 l~~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 168 LLSKYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp GS-HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred cccchhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 98721 0 111112221111112223 799999999999999999887764
No 278
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.54 E-value=7.4e-14 Score=116.86 Aligned_cols=113 Identities=19% Similarity=0.118 Sum_probs=80.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcC---------------Cccc----cccccceeEE----EEEEcCEEEEEEecCCC
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHIG---------------EVLS----TVPTIGFNVE----KVQYKNVIFTVWDVGGQ 71 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~~---------------~~~~----~~~t~~~~~~----~~~~~~~~~~i~D~~g~ 71 (193)
.+.-+|+++|+.++|||||+++|... .+.. ...|...... ...+.+.++.+|||||+
T Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~ 96 (720)
T TIGR00490 17 KFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGH 96 (720)
T ss_pred ccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCc
Confidence 45679999999999999999999742 1111 1224333322 24556889999999999
Q ss_pred CCCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 029446 72 EKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKG 132 (193)
Q Consensus 72 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 132 (193)
.+|......+++.+|++++|+|+......+.. ..+..... .+.|.++++||+|...
T Consensus 97 ~~f~~~~~~al~~aD~~llVvda~~g~~~~t~-~~~~~~~~----~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 97 VDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTE-TVLRQALK----ENVKPVLFINKVDRLI 152 (720)
T ss_pred cccHHHHHHHHHhcCEEEEEEecCCCCCccHH-HHHHHHHH----cCCCEEEEEEChhccc
Confidence 99988888899999999999999764322221 22222222 4567899999999864
No 279
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.53 E-value=6.8e-14 Score=107.80 Aligned_cols=158 Identities=16% Similarity=0.199 Sum_probs=112.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC--ccc-------------cccccceeE----EEEEEcCEEEEEEecCCCCCCHHhHH
Q 029446 19 RVVMLGLDAAGKTTILYKLHIGE--VLS-------------TVPTIGFNV----EKVQYKNVIFTVWDVGGQEKLRPLWR 79 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~~~--~~~-------------~~~t~~~~~----~~~~~~~~~~~i~D~~g~~~~~~~~~ 79 (193)
+|+|+.+..-|||||+..|+... |.+ .....|+++ ..+.++++.+.|.||||+..|-....
T Consensus 7 NIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGEVE 86 (603)
T COG1217 7 NIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGEVE 86 (603)
T ss_pred eeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccchhh
Confidence 78999999999999999998632 211 112223443 45788999999999999999999998
Q ss_pred hhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCC---C--cCCCCceE
Q 029446 80 HYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGL---F--DLKNRKWH 154 (193)
Q Consensus 80 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~---~--~~~~~~~~ 154 (193)
..+.=.|.+++++|+.+.. +-...-.+.+.+. .+.+.|+|+||+|.......+-+.+.+.+ . ...++++|
T Consensus 87 Rvl~MVDgvlLlVDA~EGp-MPQTrFVlkKAl~----~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLdFP 161 (603)
T COG1217 87 RVLSMVDGVLLLVDASEGP-MPQTRFVLKKALA----LGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQLDFP 161 (603)
T ss_pred hhhhhcceEEEEEEcccCC-CCchhhhHHHHHH----cCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCCCc
Confidence 8899999999999998532 1222233444443 46678999999998876333222222221 1 12467889
Q ss_pred EEEeccccCC----------CHHHHHHHHHHHHHhhh
Q 029446 155 IQGTCALKGD----------GLYEGLDWLASTLKEMR 181 (193)
Q Consensus 155 ~~~~Sa~~~~----------gi~~~~~~l~~~~~~~~ 181 (193)
++..|++.|. ++.-+|+.|.+++..-.
T Consensus 162 ivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~ 198 (603)
T COG1217 162 IVYASARNGTASLDPEDEADDMAPLFETILDHVPAPK 198 (603)
T ss_pred EEEeeccCceeccCccccccchhHHHHHHHHhCCCCC
Confidence 9999999874 68889999998886544
No 280
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.53 E-value=8.9e-14 Score=103.82 Aligned_cols=149 Identities=19% Similarity=0.152 Sum_probs=102.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCcc------------------------------------ccccccceeEEEEEE
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHIGEVL------------------------------------STVPTIGFNVEKVQY 58 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~------------------------------------~~~~t~~~~~~~~~~ 58 (193)
...++++-+|...-||||||-+|.-+.-. +.+.|+++.|..+.-
T Consensus 4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT 83 (431)
T COG2895 4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST 83 (431)
T ss_pred ccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc
Confidence 45689999999999999999999753110 112344444555555
Q ss_pred cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--H
Q 029446 59 KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT--P 136 (193)
Q Consensus 59 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~ 136 (193)
...+|.+.||||+++|.+.......-||++|+++|+ +..+.+.......+.... --+-+++.+||+||++..+ .
T Consensus 84 ~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDA--R~Gvl~QTrRHs~I~sLL--GIrhvvvAVNKmDLvdy~e~~F 159 (431)
T COG2895 84 EKRKFIIADTPGHEQYTRNMATGASTADLAILLVDA--RKGVLEQTRRHSFIASLL--GIRHVVVAVNKMDLVDYSEEVF 159 (431)
T ss_pred ccceEEEecCCcHHHHhhhhhcccccccEEEEEEec--chhhHHHhHHHHHHHHHh--CCcEEEEEEeeecccccCHHHH
Confidence 788999999999999999988888889999999999 444555544444443321 1234889999999998643 2
Q ss_pred hHHHhhhCCC--cCCCCceEEEEeccccCCCHH
Q 029446 137 MEVCEGLGLF--DLKNRKWHIQGTCALKGDGLY 167 (193)
Q Consensus 137 ~~~~~~~~~~--~~~~~~~~~~~~Sa~~~~gi~ 167 (193)
+++.+++... .+.-....++++||..|+|+-
T Consensus 160 ~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~ 192 (431)
T COG2895 160 EAIVADYLAFAAQLGLKDVRFIPISALLGDNVV 192 (431)
T ss_pred HHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence 3333332211 112233479999999999864
No 281
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.53 E-value=1.5e-13 Score=103.95 Aligned_cols=136 Identities=26% Similarity=0.431 Sum_probs=106.1
Q ss_pred ccccceeEEEEEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCC----------hhhHHHHHHHHHHHHcCCC
Q 029446 46 VPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD----------RERIGKAKQEFQAIIKDPF 115 (193)
Q Consensus 46 ~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~ 115 (193)
.+|.|+....+..++.++.++|++||-.-+..|.+++.++++++||+++++ ...+.+....+..+++.+.
T Consensus 180 ~~T~GI~e~~F~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~ 259 (354)
T KOG0082|consen 180 VPTTGIVEVEFTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKW 259 (354)
T ss_pred cCcCCeeEEEEEeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcc
Confidence 357788888888899999999999999999999999999999999999985 3456677788899999889
Q ss_pred CCCCeEEEEEeCCCCCCCC-----------------CHhH----HHhhhCCCcC-CCCceEEEEeccccCCCHHHHHHHH
Q 029446 116 MLNSVILVFANKQDMKGAM-----------------TPME----VCEGLGLFDL-KNRKWHIQGTCALKGDGLYEGLDWL 173 (193)
Q Consensus 116 ~~~~p~ivv~nK~Dl~~~~-----------------~~~~----~~~~~~~~~~-~~~~~~~~~~Sa~~~~gi~~~~~~l 173 (193)
..+.++|+++||.|+..+. ..++ +...+..... +.+.+.+..++|.+-.+|+.+|..+
T Consensus 260 F~~tsiiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av 339 (354)
T KOG0082|consen 260 FANTSIILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAV 339 (354)
T ss_pred cccCcEEEEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHH
Confidence 9999999999999997521 1111 1111111111 2255667778999999999999999
Q ss_pred HHHHHhhh
Q 029446 174 ASTLKEMR 181 (193)
Q Consensus 174 ~~~~~~~~ 181 (193)
.+.+....
T Consensus 340 ~d~Ii~~n 347 (354)
T KOG0082|consen 340 TDTIIQNN 347 (354)
T ss_pred HHHHHHHH
Confidence 99887654
No 282
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.52 E-value=3e-13 Score=115.34 Aligned_cols=143 Identities=24% Similarity=0.195 Sum_probs=92.1
Q ss_pred CCHHHHHHHHhcCCcccc---ccc--cceeEEEEEE----------------cCEEEEEEecCCCCCCHHhHHhhhcCCC
Q 029446 28 AGKTTILYKLHIGEVLST---VPT--IGFNVEKVQY----------------KNVIFTVWDVGGQEKLRPLWRHYFNNTD 86 (193)
Q Consensus 28 ~GKssli~~l~~~~~~~~---~~t--~~~~~~~~~~----------------~~~~~~i~D~~g~~~~~~~~~~~~~~~d 86 (193)
++||||+.++.+...... +.| +|........ ..-.+.+|||||++.|.......+..+|
T Consensus 472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aD 551 (1049)
T PRK14845 472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLAD 551 (1049)
T ss_pred cccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCC
Confidence 459999999998766432 122 2222222211 0113899999999999888888888999
Q ss_pred EEEEEEECCC---hhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--------------Hh----HHH-----
Q 029446 87 GLIYVVDSLD---RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT--------------PM----EVC----- 140 (193)
Q Consensus 87 ~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--------------~~----~~~----- 140 (193)
++++|+|+++ +++++.+. .+.. .++|+|+|+||+|+.+... .+ ++.
T Consensus 552 ivlLVVDa~~Gi~~qT~e~I~-----~lk~---~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~ 623 (1049)
T PRK14845 552 LAVLVVDINEGFKPQTIEAIN-----ILRQ---YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYE 623 (1049)
T ss_pred EEEEEEECcccCCHhHHHHHH-----HHHH---cCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHH
Confidence 9999999986 34443332 2222 3679999999999864211 01 111
Q ss_pred -----hhhCCCc-------CCCCceEEEEeccccCCCHHHHHHHHHHHHH
Q 029446 141 -----EGLGLFD-------LKNRKWHIQGTCALKGDGLYEGLDWLASTLK 178 (193)
Q Consensus 141 -----~~~~~~~-------~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~ 178 (193)
...+... --...++++++||++|+|++++..+|.....
T Consensus 624 v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~~ 673 (1049)
T PRK14845 624 LIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLAQ 673 (1049)
T ss_pred HhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhhH
Confidence 1111110 0134678999999999999999998865443
No 283
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.51 E-value=1.1e-12 Score=98.14 Aligned_cols=118 Identities=11% Similarity=0.126 Sum_probs=73.4
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCcccc--cc--ccceeEEEEEEcCEEEEEEecCCCCCCHHhH---Hhhhc---
Q 029446 14 GNSEMRVVMLGLDAAGKTTILYKLHIGEVLST--VP--TIGFNVEKVQYKNVIFTVWDVGGQEKLRPLW---RHYFN--- 83 (193)
Q Consensus 14 ~~~~~~v~v~G~~~~GKssli~~l~~~~~~~~--~~--t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~---~~~~~--- 83 (193)
....++|+++|.+|+||||++|++++...... .. +...........+..+.++||||-.+..... ...++
T Consensus 35 ~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l 114 (313)
T TIGR00991 35 DVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEGGYINDQAVNIIKRFL 114 (313)
T ss_pred cccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEECCCCCchHHHHHHHHHHHHHHh
Confidence 35789999999999999999999998764321 11 2222223334578899999999966542211 11112
Q ss_pred ---CCCEEEEEEECCC--hhhH-HHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 029446 84 ---NTDGLIYVVDSLD--RERI-GKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA 133 (193)
Q Consensus 84 ---~~d~~i~v~d~~~--~~s~-~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 133 (193)
..|+++||.+++. .... ..+...+.+..... --.+.|++.|+.|..++
T Consensus 115 ~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~--iw~~~IVVfTh~d~~~p 168 (313)
T TIGR00991 115 LGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKD--IWRKSLVVLTHAQFSPP 168 (313)
T ss_pred hcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhh--hhccEEEEEECCccCCC
Confidence 5899999966542 2212 22233333333221 12458999999997743
No 284
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.50 E-value=1.2e-13 Score=100.00 Aligned_cols=166 Identities=19% Similarity=0.211 Sum_probs=100.8
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhcCCcc----ccc----c---------cc-----------------ceeEEEE--
Q 029446 13 FGNSEMRVVMLGLDAAGKTTILYKLHIGEVL----STV----P---------TI-----------------GFNVEKV-- 56 (193)
Q Consensus 13 ~~~~~~~v~v~G~~~~GKssli~~l~~~~~~----~~~----~---------t~-----------------~~~~~~~-- 56 (193)
..+++.-|+|+|..|+|||||+++|...-.. .|. | .+ |.+-..+
T Consensus 15 ~~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~Ts 94 (366)
T KOG1532|consen 15 AIQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTS 94 (366)
T ss_pred cccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhh
Confidence 4457788999999999999999999763221 110 0 00 1110000
Q ss_pred -----------------EEcCEEEEEEecCCCCCCH------H-hHHh-hhcCCCEEEEEEECCC---hhhHHHHHHHHH
Q 029446 57 -----------------QYKNVIFTVWDVGGQEKLR------P-LWRH-YFNNTDGLIYVVDSLD---RERIGKAKQEFQ 108 (193)
Q Consensus 57 -----------------~~~~~~~~i~D~~g~~~~~------~-~~~~-~~~~~d~~i~v~d~~~---~~s~~~~~~~~~ 108 (193)
.....+..++|||||-+.- . +... .-....++++++|..+ +.+|-.-.-+..
T Consensus 95 LNLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAc 174 (366)
T KOG1532|consen 95 LNLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYAC 174 (366)
T ss_pred HHHHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHH
Confidence 0014578999999975421 1 1111 1124678889998854 444444333334
Q ss_pred HHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHH-------hhhCC-------CcCC---------CCceEEEEeccccCCC
Q 029446 109 AIIKDPFMLNSVILVFANKQDMKGAMTPMEVC-------EGLGL-------FDLK---------NRKWHIQGTCALKGDG 165 (193)
Q Consensus 109 ~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~-------~~~~~-------~~~~---------~~~~~~~~~Sa~~~~g 165 (193)
.++.. ...|+|++.||+|+.+..-..++. +.+.. ...+ -.++..+.+|+.+|+|
T Consensus 175 Silyk---tklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G 251 (366)
T KOG1532|consen 175 SILYK---TKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEG 251 (366)
T ss_pred HHHHh---ccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCc
Confidence 44433 679999999999999864322221 11110 0001 1356799999999999
Q ss_pred HHHHHHHHHHHHHhhh
Q 029446 166 LYEGLDWLASTLKEMR 181 (193)
Q Consensus 166 i~~~~~~l~~~~~~~~ 181 (193)
.+++|..+.+.+.+..
T Consensus 252 ~ddf~~av~~~vdEy~ 267 (366)
T KOG1532|consen 252 FDDFFTAVDESVDEYE 267 (366)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999988776543
No 285
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=99.49 E-value=1.5e-12 Score=95.70 Aligned_cols=167 Identities=20% Similarity=0.216 Sum_probs=114.5
Q ss_pred hHHHHhhhhcCCCccEEEEEcCCCCCHHHHHHHHhcCCcc-----------ccccccc------------------eeEE
Q 029446 4 AFRKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVL-----------STVPTIG------------------FNVE 54 (193)
Q Consensus 4 ~~~~~~~~~~~~~~~~v~v~G~~~~GKssli~~l~~~~~~-----------~~~~t~~------------------~~~~ 54 (193)
++.++|+ ...+...|.|.|.||+|||||+..|...-.. ...|-+| ..+.
T Consensus 40 ll~~l~p--~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiR 117 (323)
T COG1703 40 LLRALYP--RTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIR 117 (323)
T ss_pred HHHHHhh--cCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEe
Confidence 4555655 4557789999999999999999998652110 0111111 1111
Q ss_pred EE--------------------EEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCC
Q 029446 55 KV--------------------QYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDP 114 (193)
Q Consensus 55 ~~--------------------~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~ 114 (193)
.+ +..++.+.|++|.|--+...-. .+-+|.++++.-+.-.+.++.++.-+.++-.
T Consensus 118 s~~srG~lGGlS~at~~~i~~ldAaG~DvIIVETVGvGQsev~I---~~~aDt~~~v~~pg~GD~~Q~iK~GimEiaD-- 192 (323)
T COG1703 118 SSPSRGTLGGLSRATREAIKLLDAAGYDVIIVETVGVGQSEVDI---ANMADTFLVVMIPGAGDDLQGIKAGIMEIAD-- 192 (323)
T ss_pred ecCCCccchhhhHHHHHHHHHHHhcCCCEEEEEecCCCcchhHH---hhhcceEEEEecCCCCcHHHHHHhhhhhhhh--
Confidence 11 1126789999999854444332 2459999999888778888888888888743
Q ss_pred CCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCc----CCCCceEEEEeccccCCCHHHHHHHHHHHHHhhhccC
Q 029446 115 FMLNSVILVFANKQDMKGAMT-PMEVCEGLGLFD----LKNRKWHIQGTCALKGDGLYEGLDWLASTLKEMRAAG 184 (193)
Q Consensus 115 ~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~~~----~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~~~~ 184 (193)
|+|+||.|...... ..++...+.+.. ...+..+++.|||.+|+|++++++.+.++.......|
T Consensus 193 -------i~vINKaD~~~A~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~~~~sg 260 (323)
T COG1703 193 -------IIVINKADRKGAEKAARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKFLTESG 260 (323)
T ss_pred -------eeeEeccChhhHHHHHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHHHHhcc
Confidence 89999999655422 234444444432 2457778999999999999999999999987766654
No 286
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.49 E-value=3.6e-13 Score=98.00 Aligned_cols=141 Identities=13% Similarity=0.012 Sum_probs=85.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccceeEEEEEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEE
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHIGEVLS-TVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVD 93 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 93 (193)
.....|+++|.+|+|||||++.+.+..... .....|. +........++.++||||.. .. .....+.+|++++++|
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i~i~~~~~~~i~~vDtPg~~--~~-~l~~ak~aDvVllviD 112 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-ITVVTGKKRRLTFIECPNDI--NA-MIDIAKVADLVLLLID 112 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-EEEEecCCceEEEEeCCchH--HH-HHHHHHhcCEEEEEEe
Confidence 456789999999999999999998753221 1112221 22233467889999999854 33 3344588999999999
Q ss_pred CCChhhHHHHHHHHHHHHcCCCCCCCeE-EEEEeCCCCCCCCC-HhHHHhhhCCCcC--CCCceEEEEeccccCC
Q 029446 94 SLDRERIGKAKQEFQAIIKDPFMLNSVI-LVFANKQDMKGAMT-PMEVCEGLGLFDL--KNRKWHIQGTCALKGD 164 (193)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~-ivv~nK~Dl~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~Sa~~~~ 164 (193)
++.....+. ..+...+.. .+.|. |+|+||+|+.+... .+++.+.+..... .-.+.+++.+||++.-
T Consensus 113 a~~~~~~~~--~~i~~~l~~---~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~ 182 (225)
T cd01882 113 ASFGFEMET--FEFLNILQV---HGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHG 182 (225)
T ss_pred cCcCCCHHH--HHHHHHHHH---cCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccCC
Confidence 975443222 222222222 34664 55999999875322 2222222211000 1124589999999874
No 287
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.49 E-value=1.8e-12 Score=95.29 Aligned_cols=120 Identities=11% Similarity=0.065 Sum_probs=76.7
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhcCCcccc----ccccceeEEEEEEcCEEEEEEecCCCCCCHH---h-------H
Q 029446 13 FGNSEMRVVMLGLDAAGKTTILYKLHIGEVLST----VPTIGFNVEKVQYKNVIFTVWDVGGQEKLRP---L-------W 78 (193)
Q Consensus 13 ~~~~~~~v~v~G~~~~GKssli~~l~~~~~~~~----~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~---~-------~ 78 (193)
.....++|+++|.+|+|||||+|++.+...... ..|...........+..+.+|||||-..... . .
T Consensus 27 ~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I 106 (249)
T cd01853 27 ELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSSI 106 (249)
T ss_pred hccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHHH
Confidence 445789999999999999999999999765322 2344444444556788999999999554411 1 1
Q ss_pred Hhhhc--CCCEEEEEEECCChh-hHH--HHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC
Q 029446 79 RHYFN--NTDGLIYVVDSLDRE-RIG--KAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM 134 (193)
Q Consensus 79 ~~~~~--~~d~~i~v~d~~~~~-s~~--~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~ 134 (193)
..++. ..+++++|..++... ... .+.+.+.+...... -.++|+|.||+|...++
T Consensus 107 ~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i--~~~~ivV~T~~d~~~p~ 165 (249)
T cd01853 107 KRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSI--WRNAIVVLTHAASSPPD 165 (249)
T ss_pred HHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhh--HhCEEEEEeCCccCCCC
Confidence 22332 578888887665321 111 23333333322111 14599999999987653
No 288
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.49 E-value=1.6e-13 Score=87.68 Aligned_cols=138 Identities=23% Similarity=0.171 Sum_probs=91.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEEEEEcCEEEEEEecCC----CCCCHHhHHhhhcCCCEEEEEEEC
Q 029446 19 RVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGG----QEKLRPLWRHYFNNTDGLIYVVDS 94 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g----~~~~~~~~~~~~~~~d~~i~v~d~ 94 (193)
|++++|..|+|||||++++.+..... ..|-.+.+ + +=...|||| +..+........+++|++++|-.+
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~ly-kKTQAve~-----~--d~~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~a 74 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTLY-KKTQAVEF-----N--DKGDIDTPGEYFEHPRWYHALITTLQDADVIIYVHAA 74 (148)
T ss_pred eeEEecccccCchhHHHHhhcchhhh-cccceeec-----c--CccccCCchhhhhhhHHHHHHHHHhhccceeeeeecc
Confidence 68999999999999999998776532 12222211 1 113579999 444444455556789999999999
Q ss_pred CChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHHHHH
Q 029446 95 LDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLA 174 (193)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~ 174 (193)
+++++.-. ..+..+ -.+|+|=|++|.|+.+..+.+...+.+... . --++|.+|+.++.|++++++.|.
T Consensus 75 nd~~s~f~--p~f~~~------~~k~vIgvVTK~DLaed~dI~~~~~~L~ea--G--a~~IF~~s~~d~~gv~~l~~~L~ 142 (148)
T COG4917 75 NDPESRFP--PGFLDI------GVKKVIGVVTKADLAEDADISLVKRWLREA--G--AEPIFETSAVDNQGVEELVDYLA 142 (148)
T ss_pred cCccccCC--cccccc------cccceEEEEecccccchHhHHHHHHHHHHc--C--CcceEEEeccCcccHHHHHHHHH
Confidence 98764211 111111 245699999999999754544433333211 1 12699999999999999999886
Q ss_pred HH
Q 029446 175 ST 176 (193)
Q Consensus 175 ~~ 176 (193)
..
T Consensus 143 ~~ 144 (148)
T COG4917 143 SL 144 (148)
T ss_pred hh
Confidence 53
No 289
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.48 E-value=2.3e-13 Score=98.17 Aligned_cols=162 Identities=13% Similarity=0.036 Sum_probs=96.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcccc-----ccccceeEEEEEEcCEEEEEEecCCCCCC----H---HhH----Hhh
Q 029446 18 MRVVMLGLDAAGKTTILYKLHIGEVLST-----VPTIGFNVEKVQYKNVIFTVWDVGGQEKL----R---PLW----RHY 81 (193)
Q Consensus 18 ~~v~v~G~~~~GKssli~~l~~~~~~~~-----~~t~~~~~~~~~~~~~~~~i~D~~g~~~~----~---~~~----~~~ 81 (193)
++|+++|..|+||||++|.+++...... ..|...........+..+.++||||-... . ... ...
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~ 80 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLC 80 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhc
Confidence 4899999999999999999998876432 23555556666778999999999992211 1 111 123
Q ss_pred hcCCCEEEEEEECCChh-hHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhC---C-CcCCCCceEEE
Q 029446 82 FNNTDGLIYVVDSLDRE-RIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLG---L-FDLKNRKWHIQ 156 (193)
Q Consensus 82 ~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~---~-~~~~~~~~~~~ 156 (193)
..+.++++||+++.+.. .-.....++..+.....+ .-+|||.|..|.......++..+... + ...+.++-.|.
T Consensus 81 ~~g~ha~llVi~~~r~t~~~~~~l~~l~~~FG~~~~--k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R~~ 158 (212)
T PF04548_consen 81 SPGPHAFLLVIPLGRFTEEDREVLELLQEIFGEEIW--KHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGGRYH 158 (212)
T ss_dssp TT-ESEEEEEEETTB-SHHHHHHHHHHHHHHCGGGG--GGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTCEE
T ss_pred cCCCeEEEEEEecCcchHHHHHHHHHHHHHccHHHH--hHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCCEEE
Confidence 35789999999997321 122233444444442211 34788889888776655333222110 0 11233444566
Q ss_pred Eeccc------cCCCHHHHHHHHHHHHHhhh
Q 029446 157 GTCAL------KGDGLYEGLDWLASTLKEMR 181 (193)
Q Consensus 157 ~~Sa~------~~~gi~~~~~~l~~~~~~~~ 181 (193)
.++.+ ....+.++++.|-+.+.++.
T Consensus 159 ~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~ 189 (212)
T PF04548_consen 159 VFNNKTKDKEKDESQVSELLEKIEEMVQENG 189 (212)
T ss_dssp ECCTTHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEeccccchhhhHHHHHHHHHHHHHHHHHcC
Confidence 66655 33468889999888887776
No 290
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.46 E-value=6.6e-13 Score=99.09 Aligned_cols=160 Identities=20% Similarity=0.130 Sum_probs=101.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCC----ccc------cccccceeEEEEE---------EcCEEEEEEecCCCCCCH
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHIGE----VLS------TVPTIGFNVEKVQ---------YKNVIFTVWDVGGQEKLR 75 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~~~----~~~------~~~t~~~~~~~~~---------~~~~~~~i~D~~g~~~~~ 75 (193)
..++++.++|+..+|||||.+++..-. |.. ...|.+.-+..+. ....++.++|+||+...-
T Consensus 5 p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLI 84 (522)
T KOG0461|consen 5 PSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLI 84 (522)
T ss_pred CceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHH
Confidence 456999999999999999999997522 111 1222222222221 246789999999998777
Q ss_pred HhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhH----HHhhh--CCCcC-
Q 029446 76 PLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPME----VCEGL--GLFDL- 148 (193)
Q Consensus 76 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~----~~~~~--~~~~~- 148 (193)
+......+-.|..++|+|+.....-+.....+.--+ .-...++|+||+|+.++..... ....+ .+...
T Consensus 85 RtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~-----~c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t~ 159 (522)
T KOG0461|consen 85 RTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGEL-----LCKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLESTG 159 (522)
T ss_pred HHHHhhhheeeeeeEEEehhcccccccchhhhhhhh-----hccceEEEEeccccccchhhhhHHHHHHHHHHHHHHhcC
Confidence 766666677899999999976543333333222211 1233789999999887643321 11111 11111
Q ss_pred CCCceEEEEeccccC----CCHHHHHHHHHHHHHh
Q 029446 149 KNRKWHIQGTCALKG----DGLYEGLDWLASTLKE 179 (193)
Q Consensus 149 ~~~~~~~~~~Sa~~~----~gi~~~~~~l~~~~~~ 179 (193)
-..+.|++++||..| +++.++.+.|...+.+
T Consensus 160 f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~ 194 (522)
T KOG0461|consen 160 FDGNSPIVEVSAADGYFKEEMIQELKEALESRIFE 194 (522)
T ss_pred cCCCCceeEEecCCCccchhHHHHHHHHHHHhhcC
Confidence 124479999999999 6666766666666543
No 291
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.46 E-value=2.2e-12 Score=92.03 Aligned_cols=104 Identities=16% Similarity=0.138 Sum_probs=64.4
Q ss_pred CEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--CCHh
Q 029446 60 NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA--MTPM 137 (193)
Q Consensus 60 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~--~~~~ 137 (193)
.....+.++.|..-.....+. -++.++.|+|+.+..+... .....+ . ..-++++||+|+.+. .+.+
T Consensus 91 ~~D~iiIEt~G~~l~~~~~~~---l~~~~i~vvD~~~~~~~~~--~~~~qi-~------~ad~~~~~k~d~~~~~~~~~~ 158 (199)
T TIGR00101 91 PLEMVFIESGGDNLSATFSPE---LADLTIFVIDVAAGDKIPR--KGGPGI-T------RSDLLVINKIDLAPMVGADLG 158 (199)
T ss_pred CCCEEEEECCCCCcccccchh---hhCcEEEEEEcchhhhhhh--hhHhHh-h------hccEEEEEhhhccccccccHH
Confidence 346778888883322222222 2688999999986554321 111111 1 112899999999863 2333
Q ss_pred HHHhhhCCCcCCCCceEEEEeccccCCCHHHHHHHHHHHHH
Q 029446 138 EVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLK 178 (193)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~ 178 (193)
.+.+..... ..+.+++++||++|+|++++++++.+++.
T Consensus 159 ~~~~~~~~~---~~~~~i~~~Sa~~g~gi~el~~~i~~~~~ 196 (199)
T TIGR00101 159 VMERDAKKM---RGEKPFIFTNLKTKEGLDTVIDWIEHYAL 196 (199)
T ss_pred HHHHHHHHh---CCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 333333221 23568999999999999999999997753
No 292
>PTZ00258 GTP-binding protein; Provisional
Probab=99.44 E-value=4.2e-12 Score=98.36 Aligned_cols=81 Identities=23% Similarity=0.324 Sum_probs=57.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCcc--cc-ccccceeEEEEEEc-----------------CEEEEEEecCCCCC-
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHIGEVL--ST-VPTIGFNVEKVQYK-----------------NVIFTVWDVGGQEK- 73 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~--~~-~~t~~~~~~~~~~~-----------------~~~~~i~D~~g~~~- 73 (193)
...++|+++|.||+|||||+|++++.... .+ ..|...+...+.+. +.++.++|+||-..
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~g 98 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKG 98 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcC
Confidence 57789999999999999999999887643 22 34555565555443 34699999999321
Q ss_pred ------CHHhHHhhhcCCCEEEEEEECC
Q 029446 74 ------LRPLWRHYFNNTDGLIYVVDSL 95 (193)
Q Consensus 74 ------~~~~~~~~~~~~d~~i~v~d~~ 95 (193)
........++++|++++|+|+.
T Consensus 99 a~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 99 ASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 1112234457899999999984
No 293
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.44 E-value=2.1e-12 Score=99.26 Aligned_cols=155 Identities=18% Similarity=0.032 Sum_probs=113.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCcc------ccccccceeEEEEEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEE
Q 029446 19 RVVMLGLDAAGKTTILYKLHIGEVL------STVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVV 92 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~~~~~------~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (193)
.|+-.|+-.-|||||+..+.+.... ..+.|.+..+......+..+.+.|.||++++-......+...|.+++|+
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alLvV 81 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLVV 81 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEEEE
Confidence 5778899999999999999986543 2356777777777777789999999999999999888889999999999
Q ss_pred ECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHHH
Q 029446 93 DSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDW 172 (193)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~ 172 (193)
|+++.-..+. .....++..- .....|+|+||+|..++...++..++..... .-...+++.+|+++|+||+++-+.
T Consensus 82 ~~deGl~~qt--gEhL~iLdll--gi~~giivltk~D~~d~~r~e~~i~~Il~~l-~l~~~~i~~~s~~~g~GI~~Lk~~ 156 (447)
T COG3276 82 AADEGLMAQT--GEHLLILDLL--GIKNGIIVLTKADRVDEARIEQKIKQILADL-SLANAKIFKTSAKTGRGIEELKNE 156 (447)
T ss_pred eCccCcchhh--HHHHHHHHhc--CCCceEEEEeccccccHHHHHHHHHHHHhhc-ccccccccccccccCCCHHHHHHH
Confidence 9964322121 2222222221 2233699999999998754444433332111 133457899999999999999999
Q ss_pred HHHHHH
Q 029446 173 LASTLK 178 (193)
Q Consensus 173 l~~~~~ 178 (193)
|.+...
T Consensus 157 l~~L~~ 162 (447)
T COG3276 157 LIDLLE 162 (447)
T ss_pred HHHhhh
Confidence 999883
No 294
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.41 E-value=2.6e-12 Score=109.19 Aligned_cols=121 Identities=17% Similarity=0.178 Sum_probs=84.1
Q ss_pred hHHHHhhhhcCCCccEEEEEcCCCCCHHHHHHHHhcCCcc------------cc-------ccccceeEEEEEE------
Q 029446 4 AFRKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVL------------ST-------VPTIGFNVEKVQY------ 58 (193)
Q Consensus 4 ~~~~~~~~~~~~~~~~v~v~G~~~~GKssli~~l~~~~~~------------~~-------~~t~~~~~~~~~~------ 58 (193)
.+.++.+ ...+.-+|+|+|+.++|||||+++|....-. ++ ..|.......+.+
T Consensus 8 ~~~~~~~--~~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~ 85 (843)
T PLN00116 8 ELRRIMD--KKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDES 85 (843)
T ss_pred HHHHHhh--CccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeeccccc
Confidence 3444544 3456679999999999999999999753210 10 1122222222222
Q ss_pred ----------cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCC
Q 029446 59 ----------KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQ 128 (193)
Q Consensus 59 ----------~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~ 128 (193)
....+.++||||+.+|.......++.+|++++|+|+...-..+.. ..|..+.. .++|+|+++||+
T Consensus 86 ~~~~~~~~~~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~-~~~~~~~~----~~~p~i~~iNK~ 160 (843)
T PLN00116 86 LKDFKGERDGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQALG----ERIRPVLTVNKM 160 (843)
T ss_pred ccccccccCCCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHH-HHHHHHHH----CCCCEEEEEECC
Confidence 257789999999999999998889999999999999865433322 23334333 578999999999
Q ss_pred CCC
Q 029446 129 DMK 131 (193)
Q Consensus 129 Dl~ 131 (193)
|..
T Consensus 161 D~~ 163 (843)
T PLN00116 161 DRC 163 (843)
T ss_pred ccc
Confidence 987
No 295
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=99.41 E-value=2.6e-12 Score=95.21 Aligned_cols=162 Identities=14% Similarity=0.128 Sum_probs=110.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEEEEE----cCEEEEEEecCCCCCCHHhHHhhhcCC----CEE
Q 029446 17 EMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQY----KNVIFTVWDVGGQEKLRPLWRHYFNNT----DGL 88 (193)
Q Consensus 17 ~~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~----~~~~~~i~D~~g~~~~~~~~~~~~~~~----d~~ 88 (193)
.-+|+|+|+.++||||||.++.+..........+.-|..++. +..++.+|-..|...+..+....+... -.+
T Consensus 52 gk~VlvlGdn~sGKtsLi~klqg~e~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~aetlv 131 (473)
T KOG3905|consen 52 GKNVLVLGDNGSGKTSLISKLQGSETVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAETLV 131 (473)
T ss_pred CCeEEEEccCCCchhHHHHHhhcccccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccceEE
Confidence 358999999999999999999988854444444444444433 357899999999888877777666542 467
Q ss_pred EEEEECCChhhHHHHHHHHHHHHcCCC-----------------------------------------------------
Q 029446 89 IYVVDSLDRERIGKAKQEFQAIIKDPF----------------------------------------------------- 115 (193)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~----------------------------------------------------- 115 (193)
|++.|+++++++-+..+-|..++.+..
T Consensus 132 iltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~~llP 211 (473)
T KOG3905|consen 132 ILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEHVLLP 211 (473)
T ss_pred EEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCccccccccc
Confidence 889999998655554443333322100
Q ss_pred --------CCCCeEEEEEeCCCCCCC----CCH--------hHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHHHHHH
Q 029446 116 --------MLNSVILVFANKQDMKGA----MTP--------MEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAS 175 (193)
Q Consensus 116 --------~~~~p~ivv~nK~Dl~~~----~~~--------~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 175 (193)
.-++|++||+||+|...- .+. +...+.++ -.++...+.+|++...|++-+..+|.+
T Consensus 212 L~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFC----Lr~GaaLiyTSvKE~KNidllyKYivh 287 (473)
T KOG3905|consen 212 LGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFC----LRYGAALIYTSVKETKNIDLLYKYIVH 287 (473)
T ss_pred cCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHH----HHcCceeEEeecccccchHHHHHHHHH
Confidence 115789999999998431 111 11122222 246778999999999999999999999
Q ss_pred HHHhhhc
Q 029446 176 TLKEMRA 182 (193)
Q Consensus 176 ~~~~~~~ 182 (193)
..+....
T Consensus 288 r~yG~~f 294 (473)
T KOG3905|consen 288 RSYGFPF 294 (473)
T ss_pred HhcCccc
Confidence 8875543
No 296
>PRK12289 GTPase RsgA; Reviewed
Probab=99.41 E-value=3.3e-13 Score=103.65 Aligned_cols=105 Identities=20% Similarity=0.139 Sum_probs=77.4
Q ss_pred HHhhhcCCCEEEEEEECCChh-hHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEE
Q 029446 78 WRHYFNNTDGLIYVVDSLDRE-RIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQ 156 (193)
Q Consensus 78 ~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (193)
.+..+.++|.+++|+|+.++. ....+..++..+. ..++|+|+|+||+|+.+......+.+.+ +..+++++
T Consensus 83 ~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~----~~~ip~ILVlNK~DLv~~~~~~~~~~~~-----~~~g~~v~ 153 (352)
T PRK12289 83 DRPPVANADQILLVFALAEPPLDPWQLSRFLVKAE----STGLEIVLCLNKADLVSPTEQQQWQDRL-----QQWGYQPL 153 (352)
T ss_pred echhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHH----HCCCCEEEEEEchhcCChHHHHHHHHHH-----HhcCCeEE
Confidence 344578999999999998765 3434556665542 2578999999999997643333333322 24456899
Q ss_pred EeccccCCCHHHHHHHHHHHHHhhhccCCCCCCcCCC
Q 029446 157 GTCALKGDGLYEGLDWLASTLKEMRAAGYSSVGTSSF 193 (193)
Q Consensus 157 ~~Sa~~~~gi~~~~~~l~~~~~~~~~~~~~~~~~~~~ 193 (193)
.+||+++.|++++++.+...+ ..-.|.+++|||||
T Consensus 154 ~iSA~tg~GI~eL~~~L~~ki--~v~iG~SgVGKSSL 188 (352)
T PRK12289 154 FISVETGIGLEALLEQLRNKI--TVVAGPSGVGKSSL 188 (352)
T ss_pred EEEcCCCCCHHHHhhhhccce--EEEEeCCCCCHHHH
Confidence 999999999999999998765 45569999999985
No 297
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.41 E-value=1.3e-11 Score=93.61 Aligned_cols=107 Identities=15% Similarity=0.056 Sum_probs=67.7
Q ss_pred CEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHH
Q 029446 60 NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEV 139 (193)
Q Consensus 60 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~ 139 (193)
+..+.+.||+|..... ......+|.++++.+....+.+... ...+ ..+|.++|+||+|+.........
T Consensus 126 g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~~~~el~~~---~~~l------~~~~~ivv~NK~Dl~~~~~~~~~ 193 (300)
T TIGR00750 126 GYDVIIVETVGVGQSE---VDIANMADTFVVVTIPGTGDDLQGI---KAGL------MEIADIYVVNKADGEGATNVTIA 193 (300)
T ss_pred CCCEEEEeCCCCchhh---hHHHHhhceEEEEecCCccHHHHHH---HHHH------hhhccEEEEEcccccchhHHHHH
Confidence 6789999999954222 2345678898888655433332222 2222 34667999999998865432221
Q ss_pred Hhh----hCC--CcCCCCceEEEEeccccCCCHHHHHHHHHHHHH
Q 029446 140 CEG----LGL--FDLKNRKWHIQGTCALKGDGLYEGLDWLASTLK 178 (193)
Q Consensus 140 ~~~----~~~--~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~ 178 (193)
... +.. .....+..+++++||++++|+++++++|.+...
T Consensus 194 ~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~ 238 (300)
T TIGR00750 194 RLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT 238 (300)
T ss_pred HHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence 111 111 111123446999999999999999999998754
No 298
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.39 E-value=4.8e-13 Score=95.04 Aligned_cols=113 Identities=19% Similarity=0.110 Sum_probs=74.5
Q ss_pred CHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhH-HHhhh---CCCcCC
Q 029446 74 LRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPME-VCEGL---GLFDLK 149 (193)
Q Consensus 74 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~-~~~~~---~~~~~~ 149 (193)
++..+..+++++|++++|+|++++.. .|...+... ..+.|+++|+||+|+.+.....+ ..... ......
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~-----~~~~~l~~~--~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 96 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPG-----SLIPRLRLF--GGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLG 96 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCC-----ccchhHHHh--cCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcC
Confidence 57778889999999999999987542 111111111 14689999999999975433221 21111 000001
Q ss_pred CCceEEEEeccccCCCHHHHHHHHHHHHHhhh---ccCCCCCCcCCC
Q 029446 150 NRKWHIQGTCALKGDGLYEGLDWLASTLKEMR---AAGYSSVGTSSF 193 (193)
Q Consensus 150 ~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~---~~~~~~~~~~~~ 193 (193)
....+++++||++++|++++++.|.+.+.... --|.+++|||+|
T Consensus 97 ~~~~~i~~vSA~~~~gi~eL~~~l~~~l~~~~~~~~~G~~nvGKStl 143 (190)
T cd01855 97 LKPKDVILISAKKGWGVEELINAIKKLAKKGGDVYVVGATNVGKSTL 143 (190)
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHhhcCCcEEEEcCCCCCHHHH
Confidence 11125899999999999999999999874322 239999999975
No 299
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.39 E-value=1.5e-12 Score=102.81 Aligned_cols=154 Identities=20% Similarity=0.206 Sum_probs=101.7
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhcC--------------------Ccc-cc-----------ccccceeEE--EEEE
Q 029446 13 FGNSEMRVVMLGLDAAGKTTILYKLHIG--------------------EVL-ST-----------VPTIGFNVE--KVQY 58 (193)
Q Consensus 13 ~~~~~~~v~v~G~~~~GKssli~~l~~~--------------------~~~-~~-----------~~t~~~~~~--~~~~ 58 (193)
.....+.++++|+.++|||||+.++.-. ..+ .| ...+.++.. .+.-
T Consensus 173 ~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes 252 (603)
T KOG0458|consen 173 DPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFES 252 (603)
T ss_pred CCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEec
Confidence 3346689999999999999999888641 100 00 011112222 2333
Q ss_pred cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCChhhHHH------HHHHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 029446 59 KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGK------AKQEFQAIIKDPFMLNSVILVFANKQDMKG 132 (193)
Q Consensus 59 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~------~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 132 (193)
....++|.|+||+..|..........+|++++|+|++.. .|+. .......+++.. --.-+||++||+|+.+
T Consensus 253 ~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~-~FE~gfd~~gQtrEha~llr~L--gi~qlivaiNKmD~V~ 329 (603)
T KOG0458|consen 253 KSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTG-EFESGFDPGGQTREHALLLRSL--GISQLIVAINKMDLVS 329 (603)
T ss_pred CceeEEEecCCCccccchhhhccccccceEEEEEECCcc-hhhhccCCCCchHHHHHHHHHc--CcceEEEEeecccccC
Confidence 578899999999999999988888899999999999842 1222 112333333321 1345899999999998
Q ss_pred CCC--HhHHHhhhCC-----CcCCCCceEEEEeccccCCCHHHH
Q 029446 133 AMT--PMEVCEGLGL-----FDLKNRKWHIQGTCALKGDGLYEG 169 (193)
Q Consensus 133 ~~~--~~~~~~~~~~-----~~~~~~~~~~~~~Sa~~~~gi~~~ 169 (193)
..+ .+++...+.. .-+....+.|++||+.+|+|+-..
T Consensus 330 Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~ 373 (603)
T KOG0458|consen 330 WSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI 373 (603)
T ss_pred ccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence 643 3344433332 223455678999999999997543
No 300
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.38 E-value=2e-12 Score=85.30 Aligned_cols=113 Identities=17% Similarity=0.109 Sum_probs=79.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-cc-cccceeEEEEEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECC
Q 029446 18 MRVVMLGLDAAGKTTILYKLHIGEVLS-TV-PTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL 95 (193)
Q Consensus 18 ~~v~v~G~~~~GKssli~~l~~~~~~~-~~-~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~ 95 (193)
+|++++|..|+|||+|+.++....+.. +. +|.+ +......+.+.++.+++|++.+
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~-----------------------~~~~~~~~~~s~~~~~~v~~~~ 57 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG-----------------------IDVYDPTSYESFDVVLQCWRVD 57 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh-----------------------hhhccccccCCCCEEEEEEEcc
Confidence 589999999999999999998777753 22 3433 3333445567899999999999
Q ss_pred ChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCCHH
Q 029446 96 DRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLY 167 (193)
Q Consensus 96 ~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 167 (193)
...+++.+ |...+.... ..+.|.++++||.|+.++. ++.+... .+++++|++++.|+.
T Consensus 58 ~~~s~~~~--~~~~i~~~~-k~dl~~~~~~nk~dl~~~~---~~~~~~~--------~~~~~~s~~~~~~~~ 115 (124)
T smart00010 58 DRDSADNK--NVPEVLVGN-KSDLPILVGGNRDVLEEER---QVATEEG--------LEFAETSAKTPEEGE 115 (124)
T ss_pred CHHHHHHH--hHHHHHhcC-CCCCcEEEEeechhhHhhC---cCCHHHH--------HHHHHHhCCCcchhh
Confidence 99888765 555544332 3568899999999974432 1111111 147789999999884
No 301
>PTZ00416 elongation factor 2; Provisional
Probab=99.37 E-value=1.1e-11 Score=105.26 Aligned_cols=112 Identities=18% Similarity=0.167 Sum_probs=78.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCc--c----------cc-------ccccceeEEEEEEc----------CEEEEE
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHIGEV--L----------ST-------VPTIGFNVEKVQYK----------NVIFTV 65 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~~~~--~----------~~-------~~t~~~~~~~~~~~----------~~~~~i 65 (193)
++.-+|+++|+.++|||||+++|....- . ++ ..|.......+.+. +..+.+
T Consensus 17 ~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~l 96 (836)
T PTZ00416 17 DQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINL 96 (836)
T ss_pred cCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEE
Confidence 4455999999999999999999986321 1 00 11111111222332 567999
Q ss_pred EecCCCCCCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCC
Q 029446 66 WDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMK 131 (193)
Q Consensus 66 ~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 131 (193)
+||||+.+|.......++.+|++++|+|+.+.-.-+.- ..+..+.. .+.|+|+++||+|+.
T Consensus 97 iDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~-~~~~~~~~----~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 97 IDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTE-TVLRQALQ----ERIRPVLFINKVDRA 157 (836)
T ss_pred EcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHH-HHHHHHHH----cCCCEEEEEEChhhh
Confidence 99999999988888889999999999999865332222 33344433 468999999999987
No 302
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=99.37 E-value=3e-12 Score=94.80 Aligned_cols=153 Identities=19% Similarity=0.211 Sum_probs=106.8
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCcc---ccccccceeEEEEEE-cCEEEEEEecCCC---------CCCHHhHHh
Q 029446 14 GNSEMRVVMLGLDAAGKTTILYKLHIGEVL---STVPTIGFNVEKVQY-KNVIFTVWDVGGQ---------EKLRPLWRH 80 (193)
Q Consensus 14 ~~~~~~v~v~G~~~~GKssli~~l~~~~~~---~~~~t~~~~~~~~~~-~~~~~~i~D~~g~---------~~~~~~~~~ 80 (193)
.....-|.|+|..|+|||||++.|++.... ....|.+++....+. .+..+.+.||.|- ..|++....
T Consensus 175 ~~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~~vlltDTvGFisdLP~~LvaAF~ATLee 254 (410)
T KOG0410|consen 175 GESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGNFVLLTDTVGFISDLPIQLVAAFQATLEE 254 (410)
T ss_pred cCCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCcEEEEeechhhhhhCcHHHHHHHHHHHHH
Confidence 345678999999999999999999965433 235777777766655 5678899999992 234444444
Q ss_pred hhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCe----EEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEE
Q 029446 81 YFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSV----ILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQ 156 (193)
Q Consensus 81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p----~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (193)
. ..+|.++-|.|+++|. .+.....+...++....+..| +|=|-||+|..+.....| .. ..+
T Consensus 255 V-aeadlllHvvDiShP~-ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e~E----~n---------~~v 319 (410)
T KOG0410|consen 255 V-AEADLLLHVVDISHPN-AEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVEEE----KN---------LDV 319 (410)
T ss_pred H-hhcceEEEEeecCCcc-HHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccCccc----cC---------Ccc
Confidence 3 5799999999999886 455555555555543333233 466778888665422211 11 157
Q ss_pred EeccccCCCHHHHHHHHHHHHHhhh
Q 029446 157 GTCALKGDGLYEGLDWLASTLKEMR 181 (193)
Q Consensus 157 ~~Sa~~~~gi~~~~~~l~~~~~~~~ 181 (193)
.+||.+|+|++++.+.+-..+....
T Consensus 320 ~isaltgdgl~el~~a~~~kv~~~t 344 (410)
T KOG0410|consen 320 GISALTGDGLEELLKAEETKVASET 344 (410)
T ss_pred ccccccCccHHHHHHHHHHHhhhhh
Confidence 8999999999999999988876543
No 303
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.36 E-value=4.5e-12 Score=102.61 Aligned_cols=159 Identities=25% Similarity=0.218 Sum_probs=107.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCcc--cc---ccccceeEEEEE----------------EcCEEEEEEecCCCCCC
Q 029446 16 SEMRVVMLGLDAAGKTTILYKLHIGEVL--ST---VPTIGFNVEKVQ----------------YKNVIFTVWDVGGQEKL 74 (193)
Q Consensus 16 ~~~~v~v~G~~~~GKssli~~l~~~~~~--~~---~~t~~~~~~~~~----------------~~~~~~~i~D~~g~~~~ 74 (193)
+.+-+||+|+..+|||-|+..+.+.... +. .-.+|.++.... ++-=-+.++||||++.|
T Consensus 474 RSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsF 553 (1064)
T KOG1144|consen 474 RSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESF 553 (1064)
T ss_pred CCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhh
Confidence 5678999999999999999998875432 11 122333333221 11124789999999999
Q ss_pred HHhHHhhhcCCCEEEEEEECCCh---hhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCC-CCC-----C----------
Q 029446 75 RPLWRHYFNNTDGLIYVVDSLDR---ERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMK-GAM-----T---------- 135 (193)
Q Consensus 75 ~~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~-~~~-----~---------- 135 (193)
..++......||.+|+|+|+.+. ++++.+ ..+ +. ++.|+||.+||+|.. ... .
T Consensus 554 tnlRsrgsslC~~aIlvvdImhGlepqtiESi----~lL-R~---rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k 625 (1064)
T KOG1144|consen 554 TNLRSRGSSLCDLAILVVDIMHGLEPQTIESI----NLL-RM---RKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKK 625 (1064)
T ss_pred hhhhhccccccceEEEEeehhccCCcchhHHH----HHH-Hh---cCCCeEEeehhhhhhcccccCCCchHHHHHHHhhH
Confidence 99999999999999999999753 333332 222 22 689999999999954 210 0
Q ss_pred --HhHHHh-------hh---CCC---cCCC----CceEEEEeccccCCCHHHHHHHHHHHHHhhhc
Q 029446 136 --PMEVCE-------GL---GLF---DLKN----RKWHIQGTCALKGDGLYEGLDWLASTLKEMRA 182 (193)
Q Consensus 136 --~~~~~~-------~~---~~~---~~~~----~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~~ 182 (193)
..++.. ++ ++. ..++ .-+.++++||.+|+||.+|+.+|++.......
T Consensus 626 ~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m~ 691 (1064)
T KOG1144|consen 626 DVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTMV 691 (1064)
T ss_pred HHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHHHH
Confidence 011111 11 111 0111 23568999999999999999999998776553
No 304
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.36 E-value=1.2e-12 Score=100.45 Aligned_cols=159 Identities=15% Similarity=0.101 Sum_probs=81.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCcc-----cc---ccccceeEEEEEE-cCEEEEEEecCCCCCCHHhHHh-----
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHIGEVL-----ST---VPTIGFNVEKVQY-KNVIFTVWDVGGQEKLRPLWRH----- 80 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~-----~~---~~t~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~----- 80 (193)
...++|+|+|.+|+|||||||.|.+-... .+ ..|... ..+.+ +.-.+.+||.||...-......
T Consensus 33 ~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~--~~Y~~p~~pnv~lWDlPG~gt~~f~~~~Yl~~~ 110 (376)
T PF05049_consen 33 NAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEP--TPYPHPKFPNVTLWDLPGIGTPNFPPEEYLKEV 110 (376)
T ss_dssp H--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS---EEEE-SS-TTEEEEEE--GGGSS--HHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCC--eeCCCCCCCCCeEEeCCCCCCCCCCHHHHHHHc
Confidence 47899999999999999999999863222 11 122222 22323 2235999999994322222222
Q ss_pred hhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCC--CC-------CC----HhHHHhhhC--C
Q 029446 81 YFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMK--GA-------MT----PMEVCEGLG--L 145 (193)
Q Consensus 81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~--~~-------~~----~~~~~~~~~--~ 145 (193)
-+...|.+|++.+- .|.....++...++. .++|+++|-||+|.. .+ -. .+++.+... +
T Consensus 111 ~~~~yD~fiii~s~----rf~~ndv~La~~i~~---~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L 183 (376)
T PF05049_consen 111 KFYRYDFFIIISSE----RFTENDVQLAKEIQR---MGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENL 183 (376)
T ss_dssp TGGG-SEEEEEESS----S--HHHHHHHHHHHH---TT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHH
T ss_pred cccccCEEEEEeCC----CCchhhHHHHHHHHH---cCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHH
Confidence 34578987776653 344544444444444 578999999999951 10 01 112211110 1
Q ss_pred CcCCCCceEEEEeccccC--CCHHHHHHHHHHHHHhhhc
Q 029446 146 FDLKNRKWHIQGTCALKG--DGLYEGLDWLASTLKEMRA 182 (193)
Q Consensus 146 ~~~~~~~~~~~~~Sa~~~--~gi~~~~~~l~~~~~~~~~ 182 (193)
....-...++|.+|+.+- .+...+.+.|.+.+...+.
T Consensus 184 ~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~Kr 222 (376)
T PF05049_consen 184 QKAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAHKR 222 (376)
T ss_dssp HCTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GGGH
T ss_pred HHcCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHHHH
Confidence 111123346999998864 4588888888888776654
No 305
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.35 E-value=1.2e-11 Score=88.91 Aligned_cols=152 Identities=14% Similarity=0.124 Sum_probs=87.0
Q ss_pred hhcCCCccEEEEEcCCCCCHHHHHHHHhcCCcc--c-----ccc----------ccceeEEEEE----------------
Q 029446 11 VFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVL--S-----TVP----------TIGFNVEKVQ---------------- 57 (193)
Q Consensus 11 ~~~~~~~~~v~v~G~~~~GKssli~~l~~~~~~--~-----~~~----------t~~~~~~~~~---------------- 57 (193)
.........|+++|..|+|||||++++...... . ... ..+.....+.
T Consensus 16 ~~~~~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l 95 (207)
T TIGR00073 16 RLDKHGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHAL 95 (207)
T ss_pred HhhhcCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHH
Confidence 345567889999999999999999999753110 0 000 0011111100
Q ss_pred ----EcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 029446 58 ----YKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA 133 (193)
Q Consensus 58 ----~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 133 (193)
..+..+.+.++.|.-.... .+.-..+..+.++|+.+.... ... .... ...|.++++||+|+.+.
T Consensus 96 ~~~~~~~~d~IiIEt~G~l~~~~---~~~~~~~~~i~Vvd~~~~d~~--~~~-~~~~------~~~a~iiv~NK~Dl~~~ 163 (207)
T TIGR00073 96 EDLPLDDIDLLFIENVGNLVCPA---DFDLGEHMRVVLLSVTEGDDK--PLK-YPGM------FKEADLIVINKADLAEA 163 (207)
T ss_pred HHhccCCCCEEEEecCCCcCCCc---ccccccCeEEEEEecCcccch--hhh-hHhH------HhhCCEEEEEHHHcccc
Confidence 0134677788877211111 111234555677777654321 111 1111 24567999999999764
Q ss_pred C--CHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHHHHHHHH
Q 029446 134 M--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTL 177 (193)
Q Consensus 134 ~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~ 177 (193)
. ...+..+.+... ....+++++||++++|++++++++.++.
T Consensus 164 ~~~~~~~~~~~l~~~---~~~~~i~~~Sa~~g~gv~~l~~~i~~~~ 206 (207)
T TIGR00073 164 VGFDVEKMKADAKKI---NPEAEIILMSLKTGEGLDEWLEFLEGQV 206 (207)
T ss_pred chhhHHHHHHHHHHh---CCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 2 222333322211 2345899999999999999999998754
No 306
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.34 E-value=2.5e-12 Score=95.15 Aligned_cols=162 Identities=15% Similarity=0.033 Sum_probs=103.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCc---c-cc--ccccceeEE----------------EEE----------EcCEE
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHIGEV---L-ST--VPTIGFNVE----------------KVQ----------YKNVI 62 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~~~~---~-~~--~~t~~~~~~----------------~~~----------~~~~~ 62 (193)
+..++|..+|+..-|||||.+.+++--. + +. ..|...-|. ... ---..
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~ 87 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR 87 (415)
T ss_pred CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence 5689999999999999999999987211 1 00 000000000 000 01247
Q ss_pred EEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH----hH
Q 029446 63 FTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP----ME 138 (193)
Q Consensus 63 ~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~----~~ 138 (193)
+.+.|.||++-.-....+...--|++++|++++.++.--...+ ....+... .-+.+|++-||+|++..+.. ++
T Consensus 88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~E-Hl~AleIi--gik~iiIvQNKIDlV~~E~AlE~y~q 164 (415)
T COG5257 88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTRE-HLMALEII--GIKNIIIVQNKIDLVSRERALENYEQ 164 (415)
T ss_pred EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHH-HHHHHhhh--ccceEEEEecccceecHHHHHHHHHH
Confidence 8999999998766655555556799999999997543111111 11111211 23458999999999986432 33
Q ss_pred HHhhhCCCcCCCCceEEEEeccccCCCHHHHHHHHHHHHHhhh
Q 029446 139 VCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEMR 181 (193)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~ 181 (193)
+.+...--. ..+.|++++||..+.|++.++++|.+.+..-.
T Consensus 165 Ik~FvkGt~--Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP~ 205 (415)
T COG5257 165 IKEFVKGTV--AENAPIIPISAQHKANIDALIEAIEKYIPTPE 205 (415)
T ss_pred HHHHhcccc--cCCCceeeehhhhccCHHHHHHHHHHhCCCCc
Confidence 333222111 24568999999999999999999999986443
No 307
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.34 E-value=1.6e-11 Score=103.27 Aligned_cols=113 Identities=19% Similarity=0.149 Sum_probs=77.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCC--cc----------cc-------ccccceeEEEEEE----cCEEEEEEecCCC
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHIGE--VL----------ST-------VPTIGFNVEKVQY----KNVIFTVWDVGGQ 71 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~~~--~~----------~~-------~~t~~~~~~~~~~----~~~~~~i~D~~g~ 71 (193)
.+.-+|+++|+.++|||||+.+|+... .. ++ ..|+......+.+ .+..+.++||||+
T Consensus 18 ~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 97 (731)
T PRK07560 18 EQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGH 97 (731)
T ss_pred hcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCc
Confidence 355689999999999999999997421 11 10 1122222222322 4688999999999
Q ss_pred CCCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 029446 72 EKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKG 132 (193)
Q Consensus 72 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 132 (193)
.+|.......++.+|++++|+|+.....-+. ...+..... .+.|.|+++||+|...
T Consensus 98 ~df~~~~~~~l~~~D~avlVvda~~g~~~~t-~~~~~~~~~----~~~~~iv~iNK~D~~~ 153 (731)
T PRK07560 98 VDFGGDVTRAMRAVDGAIVVVDAVEGVMPQT-ETVLRQALR----ERVKPVLFINKVDRLI 153 (731)
T ss_pred cChHHHHHHHHHhcCEEEEEEECCCCCCccH-HHHHHHHHH----cCCCeEEEEECchhhc
Confidence 9998888888999999999999976532222 223333322 2467899999999763
No 308
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.33 E-value=2.6e-11 Score=84.32 Aligned_cols=64 Identities=19% Similarity=0.234 Sum_probs=43.5
Q ss_pred EEEEEEecCCCC----CCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCC
Q 029446 61 VIFTVWDVGGQE----KLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQ 128 (193)
Q Consensus 61 ~~~~i~D~~g~~----~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~ 128 (193)
..+.++||||-. .....+..+++.+|++++|.+++...+-.... .+.+.... .....|+|.||.
T Consensus 101 ~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~-~l~~~~~~---~~~~~i~V~nk~ 168 (168)
T PF00350_consen 101 RNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDME-FLKQMLDP---DKSRTIFVLNKA 168 (168)
T ss_dssp CSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHH-HHHHHHTT---TCSSEEEEEE-G
T ss_pred cceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHH-HHHHHhcC---CCCeEEEEEcCC
Confidence 368999999942 23366778889999999999998865544443 33333333 233489999984
No 309
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.33 E-value=5e-12 Score=86.99 Aligned_cols=110 Identities=19% Similarity=0.182 Sum_probs=73.5
Q ss_pred CHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCce
Q 029446 74 LRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKW 153 (193)
Q Consensus 74 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 153 (193)
++...+..++++|++++|+|++++..... ..+...... .++|+++|+||+|+.+.....+.. .. .+..+.
T Consensus 2 ~~~~~~~i~~~aD~vl~V~D~~~~~~~~~--~~l~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~-~~----~~~~~~ 71 (156)
T cd01859 2 WKRLVRRIIKESDVVLEVLDARDPELTRS--RKLERYVLE---LGKKLLIVLNKADLVPKEVLEKWK-SI----KESEGI 71 (156)
T ss_pred HHHHHHHHHhhCCEEEEEeeCCCCcccCC--HHHHHHHHh---CCCcEEEEEEhHHhCCHHHHHHHH-HH----HHhCCC
Confidence 45667788889999999999987543222 112222221 468999999999986532222211 11 112345
Q ss_pred EEEEeccccCCCHHHHHHHHHHHHHhhh------ccCCCCCCcCCC
Q 029446 154 HIQGTCALKGDGLYEGLDWLASTLKEMR------AAGYSSVGTSSF 193 (193)
Q Consensus 154 ~~~~~Sa~~~~gi~~~~~~l~~~~~~~~------~~~~~~~~~~~~ 193 (193)
+++.+||+++.|++++++.+.+.+.... .-|.+++|||++
T Consensus 72 ~~~~iSa~~~~gi~~L~~~l~~~~~~~~~~~~~~~ig~~~~Gkssl 117 (156)
T cd01859 72 PVVYVSAKERLGTKILRRTIKELAKIDGKEGKVGVVGYPNVGKSSI 117 (156)
T ss_pred cEEEEEccccccHHHHHHHHHHHHhhcCCCcEEEEECCCCCCHHHH
Confidence 7899999999999999999998775421 227888888864
No 310
>PRK12288 GTPase RsgA; Reviewed
Probab=99.32 E-value=4.1e-12 Score=97.61 Aligned_cols=104 Identities=24% Similarity=0.207 Sum_probs=78.0
Q ss_pred hcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccc
Q 029446 82 FNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCAL 161 (193)
Q Consensus 82 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (193)
..|+|.+++|++.+...++..+..|+... . ..++|+++|+||+|+.+........+... ..+..+++++++||+
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a-~---~~~i~~VIVlNK~DL~~~~~~~~~~~~~~--~y~~~g~~v~~vSA~ 191 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVAC-E---TLGIEPLIVLNKIDLLDDEGRAFVNEQLD--IYRNIGYRVLMVSSH 191 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHH-H---hcCCCEEEEEECccCCCcHHHHHHHHHHH--HHHhCCCeEEEEeCC
Confidence 46799999999998888888888887644 2 25689999999999976532212211111 113345689999999
Q ss_pred cCCCHHHHHHHHHHHHHhhhccCCCCCCcCCC
Q 029446 162 KGDGLYEGLDWLASTLKEMRAAGYSSVGTSSF 193 (193)
Q Consensus 162 ~~~gi~~~~~~l~~~~~~~~~~~~~~~~~~~~ 193 (193)
+++|++++++.|...+ ...-|.+++|||||
T Consensus 192 tg~GideL~~~L~~ki--~~~vG~sgVGKSTL 221 (347)
T PRK12288 192 TGEGLEELEAALTGRI--SIFVGQSGVGKSSL 221 (347)
T ss_pred CCcCHHHHHHHHhhCC--EEEECCCCCCHHHH
Confidence 9999999999998765 34569999999985
No 311
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.31 E-value=3.4e-12 Score=90.25 Aligned_cols=145 Identities=19% Similarity=0.276 Sum_probs=94.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC----ccccccccceeEEEEEE-cCEEEEEEecCCCCCCHH-----hHHhhhcCCC
Q 029446 17 EMRVVMLGLDAAGKTTILYKLHIGE----VLSTVPTIGFNVEKVQY-KNVIFTVWDVGGQEKLRP-----LWRHYFNNTD 86 (193)
Q Consensus 17 ~~~v~v~G~~~~GKssli~~l~~~~----~~~~~~t~~~~~~~~~~-~~~~~~i~D~~g~~~~~~-----~~~~~~~~~d 86 (193)
.=||+++|..|+||||+=--++.+- ....++|+++....+.+ +..-+.+||.+||+.+-. .....+++.+
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~fmen~~~~q~d~iF~nV~ 83 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEEFMENYLSSQEDNIFRNVQ 83 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhhheeehhccCCcHHHHHHHHhhcchhhheehe
Confidence 3489999999999999643333221 22335666777666666 458899999999985422 3456678999
Q ss_pred EEEEEEECCChh---hHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhC---CCcCCCCceEEEEecc
Q 029446 87 GLIYVVDSLDRE---RIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLG---LFDLKNRKWHIQGTCA 160 (193)
Q Consensus 87 ~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~---~~~~~~~~~~~~~~Sa 160 (193)
+++++||+...+ .+......++.+++. .+...+.+...|+|+...+..+++.+... ....+.....++++|.
T Consensus 84 vli~vFDves~e~~~D~~~yqk~Le~ll~~--SP~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~f~Tsi 161 (295)
T KOG3886|consen 84 VLIYVFDVESREMEKDFHYYQKCLEALLQN--SPEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKCFPTSI 161 (295)
T ss_pred eeeeeeeccchhhhhhHHHHHHHHHHHHhc--CCcceEEEEEeechhcccchHHHHHHHHHHHHHHhcccccccccccch
Confidence 999999998543 233333444555443 25677889999999998765544322211 1111344567888876
Q ss_pred ccC
Q 029446 161 LKG 163 (193)
Q Consensus 161 ~~~ 163 (193)
-+.
T Consensus 162 wDe 164 (295)
T KOG3886|consen 162 WDE 164 (295)
T ss_pred hhH
Confidence 643
No 312
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.31 E-value=2.9e-11 Score=92.87 Aligned_cols=110 Identities=20% Similarity=0.284 Sum_probs=80.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc--CCcc----------c-------------cccccceeEEEEEEcCEEEEEEecCCC
Q 029446 17 EMRVVMLGLDAAGKTTILYKLHI--GEVL----------S-------------TVPTIGFNVEKVQYKNVIFTVWDVGGQ 71 (193)
Q Consensus 17 ~~~v~v~G~~~~GKssli~~l~~--~~~~----------~-------------~~~t~~~~~~~~~~~~~~~~i~D~~g~ 71 (193)
+=.++|+-+|.+|||||..+|.- +-+. . .+..+...+..+.+.+..+++.||||+
T Consensus 12 RRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPGH 91 (528)
T COG4108 12 RRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPGH 91 (528)
T ss_pred hcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCCc
Confidence 33568899999999999998863 1110 0 011222334566778999999999999
Q ss_pred CCCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCC
Q 029446 72 EKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMK 131 (193)
Q Consensus 72 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 131 (193)
++|..-+-.-+..+|.++.|+|+... ++....-+.++.+. +++|++=++||.|..
T Consensus 92 eDFSEDTYRtLtAvDsAvMVIDaAKG--iE~qT~KLfeVcrl---R~iPI~TFiNKlDR~ 146 (528)
T COG4108 92 EDFSEDTYRTLTAVDSAVMVIDAAKG--IEPQTLKLFEVCRL---RDIPIFTFINKLDRE 146 (528)
T ss_pred cccchhHHHHHHhhheeeEEEecccC--ccHHHHHHHHHHhh---cCCceEEEeeccccc
Confidence 99877776667889999999999654 34444445555543 799999999999976
No 313
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.30 E-value=4.7e-11 Score=91.63 Aligned_cols=78 Identities=22% Similarity=0.267 Sum_probs=55.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcc--cc-ccccceeEEEEEEcC-----------------EEEEEEecCCCCC----
Q 029446 18 MRVVMLGLDAAGKTTILYKLHIGEVL--ST-VPTIGFNVEKVQYKN-----------------VIFTVWDVGGQEK---- 73 (193)
Q Consensus 18 ~~v~v~G~~~~GKssli~~l~~~~~~--~~-~~t~~~~~~~~~~~~-----------------~~~~i~D~~g~~~---- 73 (193)
++|+++|.||+|||||+|++++.... .+ ..|...+...+...+ .++.+.|+||-..
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 78999999999999999999987743 22 345555555544422 3699999999322
Q ss_pred CHH---hHHhhhcCCCEEEEEEECC
Q 029446 74 LRP---LWRHYFNNTDGLIYVVDSL 95 (193)
Q Consensus 74 ~~~---~~~~~~~~~d~~i~v~d~~ 95 (193)
... .....++++|++++|+|+.
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 112 2233457899999999984
No 314
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.28 E-value=3e-11 Score=90.39 Aligned_cols=115 Identities=14% Similarity=0.230 Sum_probs=66.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCcccc-----------ccccceeEEEEEE----cCEEEEEEecCCCCCCHH----
Q 029446 16 SEMRVVMLGLDAAGKTTILYKLHIGEVLST-----------VPTIGFNVEKVQY----KNVIFTVWDVGGQEKLRP---- 76 (193)
Q Consensus 16 ~~~~v~v~G~~~~GKssli~~l~~~~~~~~-----------~~t~~~~~~~~~~----~~~~~~i~D~~g~~~~~~---- 76 (193)
-.|+|+|+|..|+|||||||.|++...... ..+..+....... -.+.+.++||||-.....
T Consensus 3 ~~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~ 82 (281)
T PF00735_consen 3 FNFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDC 82 (281)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhh
Confidence 368999999999999999999998764321 1122222222222 256899999999221100
Q ss_pred ----------hHHhhh-------------cCCCEEEEEEECCChhhHHHHH-HHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 029446 77 ----------LWRHYF-------------NNTDGLIYVVDSLDRERIGKAK-QEFQAIIKDPFMLNSVILVFANKQDMKG 132 (193)
Q Consensus 77 ----------~~~~~~-------------~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 132 (193)
....++ ...|+++|+++++.. ++..+. ..+..+ . ...++|.|+.|+|...
T Consensus 83 ~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~-~L~~~Di~~mk~L-s----~~vNvIPvIaKaD~lt 156 (281)
T PF00735_consen 83 WEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGH-GLKPLDIEFMKRL-S----KRVNVIPVIAKADTLT 156 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSS-SS-HHHHHHHHHH-T----TTSEEEEEESTGGGS-
T ss_pred hHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCc-cchHHHHHHHHHh-c----ccccEEeEEecccccC
Confidence 000000 147999999998742 233333 344444 3 3578999999999877
Q ss_pred CCCH
Q 029446 133 AMTP 136 (193)
Q Consensus 133 ~~~~ 136 (193)
..+.
T Consensus 157 ~~el 160 (281)
T PF00735_consen 157 PEEL 160 (281)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 315
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=99.27 E-value=5.3e-11 Score=94.45 Aligned_cols=160 Identities=16% Similarity=0.154 Sum_probs=105.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEEEEE------cCEEEEEEecCCCCCCHHhHHhhhcC----CC
Q 029446 17 EMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQY------KNVIFTVWDVGGQEKLRPLWRHYFNN----TD 86 (193)
Q Consensus 17 ~~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~------~~~~~~i~D~~g~~~~~~~~~~~~~~----~d 86 (193)
.-.|+|+|..++|||||+.+|.+..- ..++.+..|..++. ...++.+|-..|...+..+....+.. --
T Consensus 25 ~k~vlvlG~~~~GKttli~~L~~~e~--~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~~t 102 (472)
T PF05783_consen 25 EKSVLVLGDKGSGKTTLIARLQGIED--PKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLPNT 102 (472)
T ss_pred CceEEEEeCCCCchHHHHHHhhccCC--CCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccccce
Confidence 45899999999999999999976543 33455555544433 23578999999987787777666553 36
Q ss_pred EEEEEEECCChhhHHHHHH-H----------------------------HHHHHc---CC---------------C----
Q 029446 87 GLIYVVDSLDRERIGKAKQ-E----------------------------FQAIIK---DP---------------F---- 115 (193)
Q Consensus 87 ~~i~v~d~~~~~s~~~~~~-~----------------------------~~~~~~---~~---------------~---- 115 (193)
++|+|+|.+.|+.+-+... | |+.... .. .
T Consensus 103 ~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~~~~ 182 (472)
T PF05783_consen 103 LVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDDESV 182 (472)
T ss_pred EEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCcccccccccccccccc
Confidence 7889999998754432111 1 111100 00 0
Q ss_pred -----------CCCCeEEEEEeCCCCCCCC----C--------HhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHHH
Q 029446 116 -----------MLNSVILVFANKQDMKGAM----T--------PMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDW 172 (193)
Q Consensus 116 -----------~~~~p~ivv~nK~Dl~~~~----~--------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~ 172 (193)
.-++|++||++|+|..... . ..+..+.++ -.++...+.||++...+++.+...
T Consensus 183 ~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~c----L~yGAsL~yts~~~~~n~~~L~~y 258 (472)
T PF05783_consen 183 LLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFC----LKYGASLIYTSVKEEKNLDLLYKY 258 (472)
T ss_pred cCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHH----HhcCCeEEEeeccccccHHHHHHH
Confidence 0147999999999975421 0 011122222 256778999999999999999999
Q ss_pred HHHHHHhhhc
Q 029446 173 LASTLKEMRA 182 (193)
Q Consensus 173 l~~~~~~~~~ 182 (193)
|.+.++..-.
T Consensus 259 i~h~l~~~~f 268 (472)
T PF05783_consen 259 ILHRLYGFPF 268 (472)
T ss_pred HHHHhccCCC
Confidence 8888865443
No 316
>PRK00098 GTPase RsgA; Reviewed
Probab=99.27 E-value=3.3e-12 Score=96.66 Aligned_cols=102 Identities=20% Similarity=0.195 Sum_probs=71.7
Q ss_pred hhcCCCEEEEEEECCChhhHHHH-HHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCcCCCCceEEEEe
Q 029446 81 YFNNTDGLIYVVDSLDRERIGKA-KQEFQAIIKDPFMLNSVILVFANKQDMKGAMT-PMEVCEGLGLFDLKNRKWHIQGT 158 (193)
Q Consensus 81 ~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 158 (193)
...++|++++|+|+.++...... ..|+..+ .. .++|+++|+||+|+.+... ..+..+. .+..+++++++
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~-~~---~~ip~iIVlNK~DL~~~~~~~~~~~~~-----~~~~g~~v~~v 147 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLA-EA---NGIKPIIVLNKIDLLDDLEEARELLAL-----YRAIGYDVLEL 147 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHH-HH---CCCCEEEEEEhHHcCCCHHHHHHHHHH-----HHHCCCeEEEE
Confidence 35899999999999887665554 4444443 32 5789999999999963311 1112221 12345689999
Q ss_pred ccccCCCHHHHHHHHHHHHHhhhccCCCCCCcCCC
Q 029446 159 CALKGDGLYEGLDWLASTLKEMRAAGYSSVGTSSF 193 (193)
Q Consensus 159 Sa~~~~gi~~~~~~l~~~~~~~~~~~~~~~~~~~~ 193 (193)
||++++|++++++.+...+. .--|.+++|||||
T Consensus 148 SA~~g~gi~~L~~~l~gk~~--~~~G~sgvGKStl 180 (298)
T PRK00098 148 SAKEGEGLDELKPLLAGKVT--VLAGQSGVGKSTL 180 (298)
T ss_pred eCCCCccHHHHHhhccCceE--EEECCCCCCHHHH
Confidence 99999999999988865432 2349999999975
No 317
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=99.26 E-value=6.3e-12 Score=94.64 Aligned_cols=104 Identities=18% Similarity=0.108 Sum_probs=76.0
Q ss_pred HhhhcCCCEEEEEEECCChh-hHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEE
Q 029446 79 RHYFNNTDGLIYVVDSLDRE-RIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQG 157 (193)
Q Consensus 79 ~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (193)
...+.++|.+++|+|+.++. ++..+..|+..+.. .++|+++|+||+|+.+......... . ....+.+++.
T Consensus 73 ~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~----~~ip~iIVlNK~DL~~~~~~~~~~~-~----~~~~g~~v~~ 143 (287)
T cd01854 73 QVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA----AGIEPVIVLTKADLLDDEEEELELV-E----ALALGYPVLA 143 (287)
T ss_pred eeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH----cCCCEEEEEEHHHCCChHHHHHHHH-H----HHhCCCeEEE
Confidence 44578999999999999887 77777777765533 4689999999999976521111111 1 1234568999
Q ss_pred eccccCCCHHHHHHHHHHHHHhhhccCCCCCCcCCC
Q 029446 158 TCALKGDGLYEGLDWLASTLKEMRAAGYSSVGTSSF 193 (193)
Q Consensus 158 ~Sa~~~~gi~~~~~~l~~~~~~~~~~~~~~~~~~~~ 193 (193)
+||+++.|+++++..|.... ..--|.+++|||+|
T Consensus 144 vSA~~g~gi~~L~~~L~~k~--~~~~G~sg~GKSTl 177 (287)
T cd01854 144 VSAKTGEGLDELREYLKGKT--SVLVGQSGVGKSTL 177 (287)
T ss_pred EECCCCccHHHHHhhhccce--EEEECCCCCCHHHH
Confidence 99999999999998887522 23349999999974
No 318
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.26 E-value=2.9e-10 Score=87.75 Aligned_cols=139 Identities=15% Similarity=0.122 Sum_probs=83.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcC----Ccc---------------ccc---cccceeE---EEEEE-----cCEEEE
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHIG----EVL---------------STV---PTIGFNV---EKVQY-----KNVIFT 64 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~~----~~~---------------~~~---~t~~~~~---~~~~~-----~~~~~~ 64 (193)
...+-|+|+|+.++|||||||+|.+. ... ..+ .|+...+ ..+.. -..++.
T Consensus 15 ~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vr 94 (492)
T TIGR02836 15 QGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVR 94 (492)
T ss_pred CCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEE
Confidence 46788999999999999999999986 222 112 3444444 22222 247899
Q ss_pred EEecCC--------CCCCHH---------------------hHHhhhc-CCCEEEEEE-ECC----ChhhHHHHH-HHHH
Q 029446 65 VWDVGG--------QEKLRP---------------------LWRHYFN-NTDGLIYVV-DSL----DRERIGKAK-QEFQ 108 (193)
Q Consensus 65 i~D~~g--------~~~~~~---------------------~~~~~~~-~~d~~i~v~-d~~----~~~s~~~~~-~~~~ 108 (193)
++||+| +.+... =+...++ +++..++|. |.+ .++.+.+.. .++.
T Consensus 95 lIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~ 174 (492)
T TIGR02836 95 LVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIE 174 (492)
T ss_pred EEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHH
Confidence 999999 111111 0233445 899999998 774 122333333 3444
Q ss_pred HHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEecccc
Q 029446 109 AIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALK 162 (193)
Q Consensus 109 ~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (193)
++ +. .++|+|+++||.|-..+. ..++.+.+. ...+++++.+|+..
T Consensus 175 eL-k~---~~kPfiivlN~~dp~~~e-t~~l~~~l~----eky~vpvl~v~c~~ 219 (492)
T TIGR02836 175 EL-KE---LNKPFIILLNSTHPYHPE-TEALRQELE----EKYDVPVLAMDVES 219 (492)
T ss_pred HH-Hh---cCCCEEEEEECcCCCCch-hHHHHHHHH----HHhCCceEEEEHHH
Confidence 44 33 589999999999944322 233332221 23345667777653
No 319
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=99.25 E-value=4.4e-12 Score=94.26 Aligned_cols=55 Identities=22% Similarity=0.268 Sum_probs=39.3
Q ss_pred CeEEEEEeCCCCCCCC--CHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHHHHHHH
Q 029446 119 SVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAST 176 (193)
Q Consensus 119 ~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~ 176 (193)
.+-++|+||+|+.+.. +.++..+.+.. .....+++++||++|+|++++.+||..+
T Consensus 231 ~ADIVVLNKiDLl~~~~~dle~~~~~lr~---lnp~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 231 AASLMLLNKVDLLPYLNFDVEKCIACARE---VNPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred cCcEEEEEhHHcCcccHHHHHHHHHHHHh---hCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 4459999999998642 23333333321 1235689999999999999999999874
No 320
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.24 E-value=8.8e-11 Score=83.86 Aligned_cols=163 Identities=18% Similarity=0.221 Sum_probs=106.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCcc-cc---ccccceeEEEEEEcCEEEEEEecCCCCCCHHh---HHhhhcCCCEEE
Q 029446 17 EMRVVMLGLDAAGKTTILYKLHIGEVL-ST---VPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPL---WRHYFNNTDGLI 89 (193)
Q Consensus 17 ~~~v~v~G~~~~GKssli~~l~~~~~~-~~---~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~---~~~~~~~~d~~i 89 (193)
..+|+++|...+||||+.+-.+.+..+ ++ .+|..++...+...-+.+.+||.|||..+-.- ....++++.+++
T Consensus 27 kp~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALi 106 (347)
T KOG3887|consen 27 KPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALI 106 (347)
T ss_pred CceEEEEeecccCcchhhheeeeccCCCceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeEE
Confidence 367999999999999987776655544 22 34444444445445688999999998765332 355678999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHc-CCCCCCCeEEEEEeCCCCCCCCC--------HhHHHhhhCCCcCCCCceEEEEecc
Q 029446 90 YVVDSLDRERIGKAKQEFQAIIK-DPFMLNSVILVFANKQDMKGAMT--------PMEVCEGLGLFDLKNRKWHIQGTCA 160 (193)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~~p~ivv~nK~Dl~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (193)
+|+|+.+. -.+.+......+.+ ....+++.+=+.+.|.|...++- .++..+++.-.-+....+.++.+|-
T Consensus 107 fvIDaQdd-y~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vsf~LTSI 185 (347)
T KOG3887|consen 107 FVIDAQDD-YMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVSFYLTSI 185 (347)
T ss_pred EEEechHH-HHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEEEEEeee
Confidence 99999643 12333333333322 12336778889999999776421 1222333333333556677888887
Q ss_pred ccCCCHHHHHHHHHHHHHhhh
Q 029446 161 LKGDGLYEGLDWLASTLKEMR 181 (193)
Q Consensus 161 ~~~~gi~~~~~~l~~~~~~~~ 181 (193)
.+ ..+-+.|..+++++.++.
T Consensus 186 yD-HSIfEAFSkvVQkLipqL 205 (347)
T KOG3887|consen 186 YD-HSIFEAFSKVVQKLIPQL 205 (347)
T ss_pred cc-hHHHHHHHHHHHHHhhhc
Confidence 64 568899999988887654
No 321
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.24 E-value=3.1e-10 Score=90.00 Aligned_cols=154 Identities=17% Similarity=0.149 Sum_probs=106.7
Q ss_pred hcCCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccc----eeEEEEEEcCEEEEEEecCCCCCCHHhHHhhhcCCC
Q 029446 12 FFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLS-TVPTIG----FNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTD 86 (193)
Q Consensus 12 ~~~~~~~~v~v~G~~~~GKssli~~l~~~~~~~-~~~t~~----~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d 86 (193)
...++.+++.|+|+.++|||.+++++.++.+.+ +..+.. ++...+.....-+.+-|.+-. ........- ..||
T Consensus 420 ~~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cD 497 (625)
T KOG1707|consen 420 QTDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACD 497 (625)
T ss_pred cccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceee
Confidence 344577999999999999999999999977663 222222 222233334555667776654 222222222 6799
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC-----CCHhHHHhhhCCCcCCCCceEEEEeccc
Q 029446 87 GLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA-----MTPMEVCEGLGLFDLKNRKWHIQGTCAL 161 (193)
Q Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (193)
++.++||.+++.+|+.....+...... ...|+++|++|+|+.+. .++.+..+.+++. +...+|++
T Consensus 498 v~~~~YDsS~p~sf~~~a~v~~~~~~~---~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~-------~P~~~S~~ 567 (625)
T KOG1707|consen 498 VACLVYDSSNPRSFEYLAEVYNKYFDL---YKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLP-------PPIHISSK 567 (625)
T ss_pred eEEEecccCCchHHHHHHHHHHHhhhc---cCCceEEEeeccccchhhhccCCChHHHHHhcCCC-------CCeeeccC
Confidence 999999999999999987766665433 68999999999998764 2446777777765 45667776
Q ss_pred cCCCHHHHHHHHHHHHH
Q 029446 162 KGDGLYEGLDWLASTLK 178 (193)
Q Consensus 162 ~~~gi~~~~~~l~~~~~ 178 (193)
.... .++|..|..+..
T Consensus 568 ~~~s-~~lf~kL~~~A~ 583 (625)
T KOG1707|consen 568 TLSS-NELFIKLATMAQ 583 (625)
T ss_pred CCCC-chHHHHHHHhhh
Confidence 4222 688888877664
No 322
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=99.23 E-value=5.6e-12 Score=97.73 Aligned_cols=115 Identities=23% Similarity=0.224 Sum_probs=75.7
Q ss_pred CCCCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCcCC
Q 029446 71 QEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT-PMEVCEGLGLFDLK 149 (193)
Q Consensus 71 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~~~~~ 149 (193)
+++|+.....+.+.++++++|+|+.+... .|...+.+.. .+.|+++|+||+|+.+... .+++.+.+. ..++
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~-----s~~~~l~~~~--~~~piilV~NK~DLl~k~~~~~~~~~~l~-~~~k 121 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFEG-----SLIPELKRFV--GGNPVLLVGNKIDLLPKSVNLSKIKEWMK-KRAK 121 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCCC-----CccHHHHHHh--CCCCEEEEEEchhhCCCCCCHHHHHHHHH-HHHH
Confidence 56788888888899999999999976532 2222222211 3678999999999976432 222221110 0011
Q ss_pred CCce---EEEEeccccCCCHHHHHHHHHHHHHhh--hccCCCCCCcCCC
Q 029446 150 NRKW---HIQGTCALKGDGLYEGLDWLASTLKEM--RAAGYSSVGTSSF 193 (193)
Q Consensus 150 ~~~~---~~~~~Sa~~~~gi~~~~~~l~~~~~~~--~~~~~~~~~~~~~ 193 (193)
..++ .++.+||+++.|++++++.|.+..... .--|.+++|||||
T Consensus 122 ~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~~~~~~v~~vG~~nvGKStl 170 (360)
T TIGR03597 122 ELGLKPVDIILVSAKKGNGIDELLDKIKKARNKKDVYVVGVTNVGKSSL 170 (360)
T ss_pred HcCCCcCcEEEecCCCCCCHHHHHHHHHHHhCCCeEEEECCCCCCHHHH
Confidence 2222 489999999999999999997653221 1239999999975
No 323
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=99.23 E-value=2.5e-10 Score=82.06 Aligned_cols=156 Identities=18% Similarity=0.144 Sum_probs=102.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCcc--cc-ccccceeEEEEEEcCEEEEEEecCCCCC------CH-HhHHhhhcC
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHIGEVL--ST-VPTIGFNVEKVQYKNVIFTVWDVGGQEK------LR-PLWRHYFNN 84 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~--~~-~~t~~~~~~~~~~~~~~~~i~D~~g~~~------~~-~~~~~~~~~ 84 (193)
+...+|+++|-|.+|||||+..++.-... .| ..|.......+.+++..+++.|.||--+ -+ .......+-
T Consensus 60 sGdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGRGRQviavArt 139 (364)
T KOG1486|consen 60 SGDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGRGRQVIAVART 139 (364)
T ss_pred cCCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCceEEEecCcccccccccCCCCCceEEEEeec
Confidence 45679999999999999999999875543 33 3566666677889999999999999222 11 122334467
Q ss_pred CCEEEEEEECCChhhHHHHHH-HH--------------------------------------------------------
Q 029446 85 TDGLIYVVDSLDRERIGKAKQ-EF-------------------------------------------------------- 107 (193)
Q Consensus 85 ~d~~i~v~d~~~~~s~~~~~~-~~-------------------------------------------------------- 107 (193)
+|.++.|+|++..+.-.++.. .+
T Consensus 140 aDlilMvLDatk~e~qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~~lT~~~ek~i~~ILheykI~Naevl~ 219 (364)
T KOG1486|consen 140 ADLILMVLDATKSEDQREILEKELEAVGIRLNKRKPNIYFKKKKTGGISFNTTVPLTHCDEKLIYTILHEYKIHNAEVLF 219 (364)
T ss_pred ccEEEEEecCCcchhHHHHHHHHHHHhceeccCCCCCeEEEeeccCCeEEeeeeccccccHHHHHHHHHHHeeccceEEE
Confidence 999999999986322111110 00
Q ss_pred ---------HHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHHHHHHHHH
Q 029446 108 ---------QAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLK 178 (193)
Q Consensus 108 ---------~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~ 178 (193)
.+++.. ...-++++.|-||+|...-++...+.+.- .-+-+||..+.|++.+++.|.+.+.
T Consensus 220 ReD~t~DdfIDvi~g-nr~Y~~ClYvYnKID~vs~eevdrlAr~P----------nsvViSC~m~lnld~lle~iWe~l~ 288 (364)
T KOG1486|consen 220 REDCTVDDFIDVIEG-NRVYIKCLYVYNKIDQVSIEEVDRLARQP----------NSVVISCNMKLNLDRLLERIWEELN 288 (364)
T ss_pred ecCCChHHHHHHHhc-cceEEEEEEEeeccceecHHHHHHHhcCC----------CcEEEEeccccCHHHHHHHHHHHhc
Confidence 011100 01125788999999977654444443322 2455788888999999999999886
Q ss_pred hhh
Q 029446 179 EMR 181 (193)
Q Consensus 179 ~~~ 181 (193)
-.+
T Consensus 289 L~r 291 (364)
T KOG1486|consen 289 LVR 291 (364)
T ss_pred eEE
Confidence 444
No 324
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=99.21 E-value=4.7e-11 Score=82.22 Aligned_cols=106 Identities=18% Similarity=0.116 Sum_probs=69.4
Q ss_pred hhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEecc
Q 029446 81 YFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCA 160 (193)
Q Consensus 81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (193)
.++++|++++|+|+.++..- ....+...+... ..+.|+|+|+||+|+.+.....+....+.. ......+.+||
T Consensus 5 ~l~~aD~il~VvD~~~p~~~--~~~~i~~~l~~~-~~~~p~ilVlNKiDl~~~~~~~~~~~~~~~----~~~~~~~~iSa 77 (157)
T cd01858 5 VIDSSDVVIQVLDARDPMGT--RCKHVEEYLKKE-KPHKHLIFVLNKCDLVPTWVTARWVKILSK----EYPTIAFHASI 77 (157)
T ss_pred hhhhCCEEEEEEECCCCccc--cCHHHHHHHHhc-cCCCCEEEEEEchhcCCHHHHHHHHHHHhc----CCcEEEEEeec
Confidence 35889999999999876321 112233333221 245899999999999765333333333321 12223688999
Q ss_pred ccCCCHHHHHHHHHHHHHhh----h----ccCCCCCCcCCC
Q 029446 161 LKGDGLYEGLDWLASTLKEM----R----AAGYSSVGTSSF 193 (193)
Q Consensus 161 ~~~~gi~~~~~~l~~~~~~~----~----~~~~~~~~~~~~ 193 (193)
+.+.|++++.+.+.+.+... . --|.+++|||||
T Consensus 78 ~~~~~~~~L~~~l~~~~~~~~~~~~~~v~~~G~~nvGKStl 118 (157)
T cd01858 78 NNPFGKGSLIQLLRQFSKLHSDKKQISVGFIGYPNVGKSSI 118 (157)
T ss_pred cccccHHHHHHHHHHHHhhhccccceEEEEEeCCCCChHHH
Confidence 99999999999998765311 1 239999999975
No 325
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.19 E-value=4.8e-10 Score=92.74 Aligned_cols=114 Identities=19% Similarity=0.186 Sum_probs=84.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCC--ccc---c----------------ccccceeEEEEEEcC-EEEEEEecCCCC
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHIGE--VLS---T----------------VPTIGFNVEKVQYKN-VIFTVWDVGGQE 72 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~~~--~~~---~----------------~~t~~~~~~~~~~~~-~~~~i~D~~g~~ 72 (193)
.+.=+|.|+|+-.+|||||..++.-.. .+. . ..|+.....++.++. ..++++|||||.
T Consensus 8 ~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGHV 87 (697)
T COG0480 8 ERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGHV 87 (697)
T ss_pred ccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCcc
Confidence 456689999999999999999986421 111 0 123333344667774 999999999999
Q ss_pred CCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 029446 73 KLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA 133 (193)
Q Consensus 73 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 133 (193)
+|.......++-+|++++|+|+...-..+.- ..|....+ .++|.|+++||+|....
T Consensus 88 DFt~EV~rslrvlDgavvVvdaveGV~~QTE-tv~rqa~~----~~vp~i~fiNKmDR~~a 143 (697)
T COG0480 88 DFTIEVERSLRVLDGAVVVVDAVEGVEPQTE-TVWRQADK----YGVPRILFVNKMDRLGA 143 (697)
T ss_pred ccHHHHHHHHHhhcceEEEEECCCCeeecHH-HHHHHHhh----cCCCeEEEEECcccccc
Confidence 9999999999999999999999754322222 33444433 57999999999998764
No 326
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.16 E-value=1.2e-09 Score=79.83 Aligned_cols=69 Identities=12% Similarity=0.100 Sum_probs=44.0
Q ss_pred EEEEEEecCCCCC-------------CHHhHHhhhcC-CCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEe
Q 029446 61 VIFTVWDVGGQEK-------------LRPLWRHYFNN-TDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFAN 126 (193)
Q Consensus 61 ~~~~i~D~~g~~~-------------~~~~~~~~~~~-~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~n 126 (193)
..+.++|+||-.. ...+...|+++ .+.+++|+|++....-+........+. ..+.|.|+|+|
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld----~~~~rti~ViT 200 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVD----PQGERTIGVIT 200 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHH----HcCCcEEEEEE
Confidence 5799999999542 12345567774 468889998864322122222233332 14688999999
Q ss_pred CCCCCCC
Q 029446 127 KQDMKGA 133 (193)
Q Consensus 127 K~Dl~~~ 133 (193)
|.|..+.
T Consensus 201 K~D~~~~ 207 (240)
T smart00053 201 KLDLMDE 207 (240)
T ss_pred CCCCCCc
Confidence 9998865
No 327
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.16 E-value=7.4e-10 Score=83.73 Aligned_cols=123 Identities=18% Similarity=0.193 Sum_probs=85.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc--c--ccccceeEEEEEEc-------------------------------
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHIGEVLS--T--VPTIGFNVEKVQYK------------------------------- 59 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~~--~--~~t~~~~~~~~~~~------------------------------- 59 (193)
....-|+++|+-..||||||+.|+...++. . .||+...+..+...
T Consensus 56 d~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnR 135 (532)
T KOG1954|consen 56 DAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNR 135 (532)
T ss_pred ccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHH
Confidence 356789999999999999999999988862 2 34444333222221
Q ss_pred ----------CEEEEEEecCCC-----------CCCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCC
Q 029446 60 ----------NVIFTVWDVGGQ-----------EKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLN 118 (193)
Q Consensus 60 ----------~~~~~i~D~~g~-----------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~ 118 (193)
--+++++||||- -.|......+...||.++++||+...+--++....+..+.. +.
T Consensus 136 f~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG----~E 211 (532)
T KOG1954|consen 136 FMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKG----HE 211 (532)
T ss_pred HHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhC----Cc
Confidence 128999999992 23455667888899999999999876555555555555533 23
Q ss_pred CeEEEEEeCCCCCCCCCHhHHHhhhC
Q 029446 119 SVILVFANKQDMKGAMTPMEVCEGLG 144 (193)
Q Consensus 119 ~p~ivv~nK~Dl~~~~~~~~~~~~~~ 144 (193)
-.+-||+||.|.++. +++.+.++
T Consensus 212 dkiRVVLNKADqVdt---qqLmRVyG 234 (532)
T KOG1954|consen 212 DKIRVVLNKADQVDT---QQLMRVYG 234 (532)
T ss_pred ceeEEEeccccccCH---HHHHHHHH
Confidence 346799999998876 55544443
No 328
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=99.14 E-value=1.7e-09 Score=82.31 Aligned_cols=80 Identities=24% Similarity=0.303 Sum_probs=55.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCcc--cc-ccccceeEEEEEE------------------cCEEEEEEecCC-----
Q 029446 17 EMRVVMLGLDAAGKTTILYKLHIGEVL--ST-VPTIGFNVEKVQY------------------KNVIFTVWDVGG----- 70 (193)
Q Consensus 17 ~~~v~v~G~~~~GKssli~~l~~~~~~--~~-~~t~~~~~~~~~~------------------~~~~~~i~D~~g----- 70 (193)
.++++|+|.||+|||||+|.++..... .| ..|+..+...+.. -...+.++|.+|
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 478999999999999999999987743 22 2455555443222 256789999988
Q ss_pred --CCCCHHhHHhhhcCCCEEEEEEECCC
Q 029446 71 --QEKLRPLWRHYFNNTDGLIYVVDSLD 96 (193)
Q Consensus 71 --~~~~~~~~~~~~~~~d~~i~v~d~~~ 96 (193)
.+..--..-..++.+|+++.|+|+..
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f~ 109 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCFG 109 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEecC
Confidence 11122223444688999999999974
No 329
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.14 E-value=1e-09 Score=89.20 Aligned_cols=116 Identities=14% Similarity=0.141 Sum_probs=71.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCcccc----ccccceeEEEEEEcCEEEEEEecCCCCCCH-------Hh---HHhh
Q 029446 16 SEMRVVMLGLDAAGKTTILYKLHIGEVLST----VPTIGFNVEKVQYKNVIFTVWDVGGQEKLR-------PL---WRHY 81 (193)
Q Consensus 16 ~~~~v~v~G~~~~GKssli~~l~~~~~~~~----~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~-------~~---~~~~ 81 (193)
..++|+++|.+|+||||++|++++...... ..|...........+..+.++||||-.... .. ...+
T Consensus 117 fslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~ 196 (763)
T TIGR00993 117 FSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQGVKIRVIDTPGLKSSASDQSKNEKILSSVKKF 196 (763)
T ss_pred cceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECCceEEEEECCCCCccccchHHHHHHHHHHHHH
Confidence 457899999999999999999999764321 223333222233467899999999944321 11 1123
Q ss_pred hc--CCCEEEEEEECCChhhH-H--HHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 029446 82 FN--NTDGLIYVVDSLDRERI-G--KAKQEFQAIIKDPFMLNSVILVFANKQDMKGA 133 (193)
Q Consensus 82 ~~--~~d~~i~v~d~~~~~s~-~--~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 133 (193)
+. .+|++++|..++..... + .+...+..+.....+ .-.|||.|+.|..++
T Consensus 197 Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iw--k~tIVVFThgD~lpp 251 (763)
T TIGR00993 197 IKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIW--FNAIVTLTHAASAPP 251 (763)
T ss_pred HhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhH--cCEEEEEeCCccCCC
Confidence 33 48999999987532221 1 233334444432222 237999999998863
No 330
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=99.13 E-value=6.6e-11 Score=82.66 Aligned_cols=109 Identities=18% Similarity=0.132 Sum_probs=70.5
Q ss_pred CCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCc
Q 029446 73 KLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRK 152 (193)
Q Consensus 73 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 152 (193)
+........++++|++++|+|++++..-... .+.... .+.|.++|+||+|+.++....+..+.+. ...
T Consensus 8 ~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~--~i~~~~-----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~-----~~~ 75 (171)
T cd01856 8 KALRQIKEKLKLVDLVIEVRDARIPLSSRNP--LLEKIL-----GNKPRIIVLNKADLADPKKTKKWLKYFE-----SKG 75 (171)
T ss_pred HHHHHHHHHHhhCCEEEEEeeccCccCcCCh--hhHhHh-----cCCCEEEEEehhhcCChHHHHHHHHHHH-----hcC
Confidence 3344456667899999999999865432211 122211 3578999999999965422222222211 122
Q ss_pred eEEEEeccccCCCHHHHHHHHHHHHHh---------------hhccCCCCCCcCCC
Q 029446 153 WHIQGTCALKGDGLYEGLDWLASTLKE---------------MRAAGYSSVGTSSF 193 (193)
Q Consensus 153 ~~~~~~Sa~~~~gi~~~~~~l~~~~~~---------------~~~~~~~~~~~~~~ 193 (193)
..++.+||++++|++++.+.+.+.+.. -.--|.+++|||++
T Consensus 76 ~~vi~iSa~~~~gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~G~~~vGKstl 131 (171)
T cd01856 76 EKVLFVNAKSGKGVKKLLKAAKKLLKDIEKLKAKGLLPRGIRAMVVGIPNVGKSTL 131 (171)
T ss_pred CeEEEEECCCcccHHHHHHHHHHHHHHHhhhhhcccCCCCeEEEEECCCCCCHHHH
Confidence 368999999999999999999887531 11237788988864
No 331
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=99.13 E-value=1.5e-10 Score=79.62 Aligned_cols=99 Identities=19% Similarity=0.201 Sum_probs=64.6
Q ss_pred CEEEEEEECCChhhHHHHHHHHH-HHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCC
Q 029446 86 DGLIYVVDSLDRERIGKAKQEFQ-AIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGD 164 (193)
Q Consensus 86 d~~i~v~d~~~~~s~~~~~~~~~-~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (193)
|++++|+|+.++.+... .++. ..... .++|+|+|+||+|+.+.....++...+. +.....++.+||+++.
T Consensus 1 Dvvl~VvD~~~p~~~~~--~~i~~~~~~~---~~~p~IiVlNK~Dl~~~~~~~~~~~~~~----~~~~~~ii~vSa~~~~ 71 (155)
T cd01849 1 DVILEVLDARDPLGTRS--PDIERVLIKE---KGKKLILVLNKADLVPKEVLRKWLAYLR----HSYPTIPFKISATNGQ 71 (155)
T ss_pred CEEEEEEeccCCccccC--HHHHHHHHhc---CCCCEEEEEechhcCCHHHHHHHHHHHH----hhCCceEEEEeccCCc
Confidence 78999999987755432 2333 22222 5789999999999976432222222221 1123468999999999
Q ss_pred CHHHHHHHHHHHHHhh----------------hccCCCCCCcCCC
Q 029446 165 GLYEGLDWLASTLKEM----------------RAAGYSSVGTSSF 193 (193)
Q Consensus 165 gi~~~~~~l~~~~~~~----------------~~~~~~~~~~~~~ 193 (193)
|++++.+.+.+...+. .--|.+++|||+|
T Consensus 72 gi~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~GKstl 116 (155)
T cd01849 72 GIEKKESAFTKQTNSNLKSYAKDGKLKKSITVGVIGYPNVGKSSV 116 (155)
T ss_pred ChhhHHHHHHHHhHHHHHHHHhccccccCcEEEEEccCCCCHHHH
Confidence 9999999887643211 1138899999874
No 332
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=99.12 E-value=9.4e-11 Score=87.93 Aligned_cols=108 Identities=20% Similarity=0.167 Sum_probs=73.7
Q ss_pred CHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCce
Q 029446 74 LRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKW 153 (193)
Q Consensus 74 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 153 (193)
........++.+|++++|+|+..+.+... ..+...+ .++|+|+|+||+|+.+.....++.+.+. ..+.
T Consensus 11 ~~~~~~~~l~~aDvVl~V~Dar~p~~~~~--~~i~~~l-----~~kp~IiVlNK~DL~~~~~~~~~~~~~~-----~~~~ 78 (276)
T TIGR03596 11 ARREIKEKLKLVDVVIEVLDARIPLSSRN--PMIDEIR-----GNKPRLIVLNKADLADPAVTKQWLKYFE-----EKGI 78 (276)
T ss_pred HHHHHHHHHhhCCEEEEEEeCCCCCCCCC--hhHHHHH-----CCCCEEEEEEccccCCHHHHHHHHHHHH-----HcCC
Confidence 34445667789999999999976644222 2233333 2578999999999975422223222221 1234
Q ss_pred EEEEeccccCCCHHHHHHHHHHHHHhhhc----------------cCCCCCCcCCC
Q 029446 154 HIQGTCALKGDGLYEGLDWLASTLKEMRA----------------AGYSSVGTSSF 193 (193)
Q Consensus 154 ~~~~~Sa~~~~gi~~~~~~l~~~~~~~~~----------------~~~~~~~~~~~ 193 (193)
+++.+||+++.|++++.+.+.+.+.+... -|.+++||||+
T Consensus 79 ~vi~iSa~~~~gi~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~nvGKSsl 134 (276)
T TIGR03596 79 KALAINAKKGKGVKKIIKAAKKLLKEKNEKLKAKGLKNRPIRAMIVGIPNVGKSTL 134 (276)
T ss_pred eEEEEECCCcccHHHHHHHHHHHHHHhhhhhhhccCCCCCeEEEEECCCCCCHHHH
Confidence 68999999999999999999887765431 17899999975
No 333
>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]
Probab=99.12 E-value=5e-11 Score=84.66 Aligned_cols=135 Identities=24% Similarity=0.406 Sum_probs=98.1
Q ss_pred cccceeEEEEEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECC----------ChhhHHHHHHHHHHHHcCCCC
Q 029446 47 PTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL----------DRERIGKAKQEFQAIIKDPFM 116 (193)
Q Consensus 47 ~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~~ 116 (193)
||+|+.....+...+-+.+.|.+|+..-+..|.+++++...+++++.++ +....++....+..++..++.
T Consensus 185 PTTGi~eypfdl~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF 264 (359)
T KOG0085|consen 185 PTTGIIEYPFDLQKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWF 264 (359)
T ss_pred CcccceecCcchhhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccc
Confidence 4455555555666788999999999999999999999988888877664 456777788888999999999
Q ss_pred CCCeEEEEEeCCCCCCCCC-----------------HhHHHhhhC------CCcCCCCceEEEEeccccCCCHHHHHHHH
Q 029446 117 LNSVILVFANKQDMKGAMT-----------------PMEVCEGLG------LFDLKNRKWHIQGTCALKGDGLYEGLDWL 173 (193)
Q Consensus 117 ~~~p~ivv~nK~Dl~~~~~-----------------~~~~~~~~~------~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l 173 (193)
.+.++|+.+||.|+.++.. -.+..+++. ...-....+.-..++|.+-+||.-+|..+
T Consensus 265 ~nssVIlFLNKkDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaV 344 (359)
T KOG0085|consen 265 QNSSVILFLNKKDLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAV 344 (359)
T ss_pred cCCceEEEechhhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHH
Confidence 9999999999999875311 011111111 11112222334457888899999999999
Q ss_pred HHHHHhhh
Q 029446 174 ASTLKEMR 181 (193)
Q Consensus 174 ~~~~~~~~ 181 (193)
.+.+.+..
T Consensus 345 kDtiLq~~ 352 (359)
T KOG0085|consen 345 KDTILQLN 352 (359)
T ss_pred HHHHHHhh
Confidence 99887654
No 334
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=99.10 E-value=1.8e-10 Score=79.92 Aligned_cols=145 Identities=19% Similarity=0.102 Sum_probs=81.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccccccc------------------cceeEEEE----------------------
Q 029446 17 EMRVVMLGLDAAGKTTILYKLHIGEVLSTVPT------------------IGFNVEKV---------------------- 56 (193)
Q Consensus 17 ~~~v~v~G~~~~GKssli~~l~~~~~~~~~~t------------------~~~~~~~~---------------------- 56 (193)
-+.|.|.|++|||||+|+.+++..-..++... .+.....+
T Consensus 13 ~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~~Da~~l~~~~g~~i~~v~TG~~CH~da~m~~~ai~~l~~ 92 (202)
T COG0378 13 MLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTKEDADRLRKLPGEPIIGVETGKGCHLDASMNLEAIEELVL 92 (202)
T ss_pred eEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeechhhHHHHHhCCCCeeEEeccCCccCCcHHHHHHHHHHHhh
Confidence 38999999999999999998876332211000 11000000
Q ss_pred EEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHc-CCCCCCCeEEEEEeCCCCCCCCC
Q 029446 57 QYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIK-DPFMLNSVILVFANKQDMKGAMT 135 (193)
Q Consensus 57 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~~p~ivv~nK~Dl~~~~~ 135 (193)
.+....+.+.+..| .-.- .-++.-..+.-|+|+|.+..+..- .+ .+... ..=++|+||.|+.+...
T Consensus 93 ~~~~~Dll~iEs~G-NL~~--~~sp~L~d~~~v~VidvteGe~~P---------~K~gP~i~-~aDllVInK~DLa~~v~ 159 (202)
T COG0378 93 DFPDLDLLFIESVG-NLVC--PFSPDLGDHLRVVVIDVTEGEDIP---------RKGGPGIF-KADLLVINKTDLAPYVG 159 (202)
T ss_pred cCCcCCEEEEecCc-ceec--ccCcchhhceEEEEEECCCCCCCc---------ccCCCcee-EeeEEEEehHHhHHHhC
Confidence 00124566666666 1100 001101233778888887543100 01 11100 13489999999998654
Q ss_pred H--hHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHHHHHHHH
Q 029446 136 P--MEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTL 177 (193)
Q Consensus 136 ~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~ 177 (193)
. +...+.... -+.+.+++++|+++|+|+++++.|+....
T Consensus 160 ~dlevm~~da~~---~np~~~ii~~n~ktg~G~~~~~~~i~~~~ 200 (202)
T COG0378 160 ADLEVMARDAKE---VNPEAPIIFTNLKTGEGLDEWLRFIEPQA 200 (202)
T ss_pred ccHHHHHHHHHH---hCCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence 4 333332221 13455899999999999999999987654
No 335
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.09 E-value=4.4e-10 Score=83.58 Aligned_cols=76 Identities=22% Similarity=0.250 Sum_probs=53.4
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCcc--c-cccccceeEEEEEEcC-----------------EEEEEEecCCCCC----CH
Q 029446 20 VVMLGLDAAGKTTILYKLHIGEVL--S-TVPTIGFNVEKVQYKN-----------------VIFTVWDVGGQEK----LR 75 (193)
Q Consensus 20 v~v~G~~~~GKssli~~l~~~~~~--~-~~~t~~~~~~~~~~~~-----------------~~~~i~D~~g~~~----~~ 75 (193)
|+++|.||+|||||+|++++.... . ...|.......+.+.+ .++.++|+||-.. ..
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 579999999999999999997763 1 2355566655555432 2599999999322 11
Q ss_pred H---hHHhhhcCCCEEEEEEECC
Q 029446 76 P---LWRHYFNNTDGLIYVVDSL 95 (193)
Q Consensus 76 ~---~~~~~~~~~d~~i~v~d~~ 95 (193)
. .....++++|++++|+|+.
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCc
Confidence 2 2233457899999999874
No 336
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=99.06 E-value=7.3e-10 Score=77.24 Aligned_cols=55 Identities=18% Similarity=0.319 Sum_probs=41.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccccccccceeEE--EEEEcCEEEEEEecCC
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVE--KVQYKNVIFTVWDVGG 70 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~--~~~~~~~~~~i~D~~g 70 (193)
...++++++|.||+|||||+|++.+.......+..|.+.. .+.. ...+.++||||
T Consensus 115 ~~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~~~-~~~~~l~DtPG 171 (172)
T cd04178 115 KTSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVHL-DKKVKLLDSPG 171 (172)
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEEEe-CCCEEEEECcC
Confidence 3458999999999999999999999876554444454443 2222 34689999998
No 337
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.04 E-value=2.7e-09 Score=78.48 Aligned_cols=140 Identities=24% Similarity=0.192 Sum_probs=91.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcC-------Ccccc------------ccccceeEEEEEEcCEEEEEEecCCCCCCH
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHIG-------EVLST------------VPTIGFNVEKVQYKNVIFTVWDVGGQEKLR 75 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~~-------~~~~~------------~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~ 75 (193)
...++|..+|+.+-|||||...++.- ....| ..|+......+.-....+.-.|+||+.+|-
T Consensus 10 kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDYv 89 (394)
T COG0050 10 KPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYV 89 (394)
T ss_pred CCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHHHH
Confidence 35789999999999999998887641 11111 122333333444467889999999999999
Q ss_pred HhHHhhhcCCCEEEEEEECCCh---hhHHHHHHHHHHHHcCCCCCCC-eEEEEEeCCCCCCCCCHhH-----HHhhhCCC
Q 029446 76 PLWRHYFNNTDGLIYVVDSLDR---ERIGKAKQEFQAIIKDPFMLNS-VILVFANKQDMKGAMTPME-----VCEGLGLF 146 (193)
Q Consensus 76 ~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~-p~ivv~nK~Dl~~~~~~~~-----~~~~~~~~ 146 (193)
++......+.|+.|+|+++++. ++-+.+. +.++ -+. -+++++||+|+.+..+..+ +.+-+..-
T Consensus 90 KNMItgAaqmDgAILVVsA~dGpmPqTrEHiL-----larq---vGvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y 161 (394)
T COG0050 90 KNMITGAAQMDGAILVVAATDGPMPQTREHIL-----LARQ---VGVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEY 161 (394)
T ss_pred HHHhhhHHhcCccEEEEEcCCCCCCcchhhhh-----hhhh---cCCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHc
Confidence 9888887889999999999863 3322221 1111 234 4679999999998543322 22223222
Q ss_pred cCCCCceEEEEecccc
Q 029446 147 DLKNRKWHIQGTCALK 162 (193)
Q Consensus 147 ~~~~~~~~~~~~Sa~~ 162 (193)
.+..-+.|++.-||..
T Consensus 162 ~f~gd~~Pii~gSal~ 177 (394)
T COG0050 162 GFPGDDTPIIRGSALK 177 (394)
T ss_pred CCCCCCcceeechhhh
Confidence 2234456788777764
No 338
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=99.03 E-value=3.7e-09 Score=80.41 Aligned_cols=162 Identities=19% Similarity=0.087 Sum_probs=103.4
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-----------------cccccceeEEEEEE------------------
Q 029446 14 GNSEMRVVMLGLDAAGKTTILYKLHIGEVLS-----------------TVPTIGFNVEKVQY------------------ 58 (193)
Q Consensus 14 ~~~~~~v~v~G~~~~GKssli~~l~~~~~~~-----------------~~~t~~~~~~~~~~------------------ 58 (193)
..-.+.|.+.|+.+.|||||+-.|..+...+ ..-+..+++..+-+
T Consensus 114 ~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~ 193 (527)
T COG5258 114 APEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKA 193 (527)
T ss_pred CCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHh
Confidence 3467899999999999999988887654321 11122233322111
Q ss_pred -----cCEEEEEEecCCCCCCHHhH--HhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCC
Q 029446 59 -----KNVIFTVWDVGGQEKLRPLW--RHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMK 131 (193)
Q Consensus 59 -----~~~~~~i~D~~g~~~~~~~~--~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 131 (193)
.+.-+.+.|+.|++.|.... ...-+..|..++++.+++.-+ .......-+.- .-..|+|+++||+|+.
T Consensus 194 ~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~--~~tkEHLgi~~---a~~lPviVvvTK~D~~ 268 (527)
T COG5258 194 AVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVT--KMTKEHLGIAL---AMELPVIVVVTKIDMV 268 (527)
T ss_pred HhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcc--hhhhHhhhhhh---hhcCCEEEEEEecccC
Confidence 14578899999999997764 333457999999999987543 22232333222 2478999999999999
Q ss_pred CCCCHhHHH----hhhC--------------------CCcCCCCceEEEEeccccCCCHHHHHHHHHHHHHhhh
Q 029446 132 GAMTPMEVC----EGLG--------------------LFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEMR 181 (193)
Q Consensus 132 ~~~~~~~~~----~~~~--------------------~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~ 181 (193)
+++..+.+. ..+. ....+..-+|+|.+|+.+|+|++-+. .+...++.++
T Consensus 269 ~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~-e~f~~Lp~rr 341 (527)
T COG5258 269 PDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLD-EFFLLLPKRR 341 (527)
T ss_pred cHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHH-HHHHhCCccc
Confidence 865433222 1111 11122335799999999999987654 4445555443
No 339
>PRK13796 GTPase YqeH; Provisional
Probab=99.03 E-value=2.4e-10 Score=88.84 Aligned_cols=112 Identities=21% Similarity=0.225 Sum_probs=68.7
Q ss_pred CCHHhHHhhhcCCC-EEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCcCCC
Q 029446 73 KLRPLWRHYFNNTD-GLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT-PMEVCEGLGLFDLKN 150 (193)
Q Consensus 73 ~~~~~~~~~~~~~d-~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~ 150 (193)
.|....... ...+ .+++|+|+.+... .....+.... .+.|+++|+||+|+.+... .+++.+.+. ...+.
T Consensus 58 ~~~~~l~~i-~~~~~lIv~VVD~~D~~~--s~~~~L~~~~-----~~kpviLViNK~DLl~~~~~~~~i~~~l~-~~~k~ 128 (365)
T PRK13796 58 DFLKLLNGI-GDSDALVVNVVDIFDFNG--SWIPGLHRFV-----GNNPVLLVGNKADLLPKSVKKNKVKNWLR-QEAKE 128 (365)
T ss_pred HHHHHHHhh-cccCcEEEEEEECccCCC--chhHHHHHHh-----CCCCEEEEEEchhhCCCccCHHHHHHHHH-HHHHh
Confidence 455554444 4445 8999999976431 1122222222 2678999999999976422 222211100 01112
Q ss_pred Cce---EEEEeccccCCCHHHHHHHHHHHHHhhh--ccCCCCCCcCCC
Q 029446 151 RKW---HIQGTCALKGDGLYEGLDWLASTLKEMR--AAGYSSVGTSSF 193 (193)
Q Consensus 151 ~~~---~~~~~Sa~~~~gi~~~~~~l~~~~~~~~--~~~~~~~~~~~~ 193 (193)
.++ .++.+||+++.|++++++.|.+...... --|.+++|||+|
T Consensus 129 ~g~~~~~v~~vSAk~g~gI~eL~~~I~~~~~~~~v~vvG~~NvGKSTL 176 (365)
T PRK13796 129 LGLRPVDVVLISAQKGHGIDELLEAIEKYREGRDVYVVGVTNVGKSTL 176 (365)
T ss_pred cCCCcCcEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEcCCCCcHHHH
Confidence 222 5899999999999999999987643222 239999999975
No 340
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=99.02 E-value=4.1e-10 Score=76.14 Aligned_cols=94 Identities=19% Similarity=0.217 Sum_probs=59.8
Q ss_pred HhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEe
Q 029446 79 RHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGT 158 (193)
Q Consensus 79 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (193)
...++.+|++++|+|+.++.+... ..+...+.... .++|+++|+||+|+.++....++.+.+ +..+.+++.+
T Consensus 6 ~~~i~~aD~vl~ViD~~~p~~~~~--~~l~~~l~~~~-~~k~~iivlNK~DL~~~~~~~~~~~~~-----~~~~~~ii~i 77 (141)
T cd01857 6 WRVVERSDIVVQIVDARNPLLFRP--PDLERYVKEVD-PRKKNILLLNKADLLTEEQRKAWAEYF-----KKEGIVVVFF 77 (141)
T ss_pred HHHHhhCCEEEEEEEccCCcccCC--HHHHHHHHhcc-CCCcEEEEEechhcCCHHHHHHHHHHH-----HhcCCeEEEE
Confidence 345689999999999987754331 12222222211 478999999999997543322232322 2333579999
Q ss_pred ccccCCCHHHHHHHHHHHHHhhhccCCCCCCcCCC
Q 029446 159 CALKGDGLYEGLDWLASTLKEMRAAGYSSVGTSSF 193 (193)
Q Consensus 159 Sa~~~~gi~~~~~~l~~~~~~~~~~~~~~~~~~~~ 193 (193)
||+++.+ .-.--|.+++|||++
T Consensus 78 Sa~~~~~-------------~~~~~G~~~vGKstl 99 (141)
T cd01857 78 SALKENA-------------TIGLVGYPNVGKSSL 99 (141)
T ss_pred EecCCCc-------------EEEEECCCCCCHHHH
Confidence 9999886 122348888888764
No 341
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=99.00 E-value=3.9e-09 Score=79.87 Aligned_cols=119 Identities=16% Similarity=0.237 Sum_probs=74.8
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhcCCccc-----------cccccceeEEEEEE----cCEEEEEEecCCCCCC---
Q 029446 13 FGNSEMRVVMLGLDAAGKTTILYKLHIGEVLS-----------TVPTIGFNVEKVQY----KNVIFTVWDVGGQEKL--- 74 (193)
Q Consensus 13 ~~~~~~~v~v~G~~~~GKssli~~l~~~~~~~-----------~~~t~~~~~~~~~~----~~~~~~i~D~~g~~~~--- 74 (193)
.....|+|.++|+.|+|||||+|.|++..... ..+++.+....... -.+.+.+.||||--++
T Consensus 19 k~Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idN 98 (373)
T COG5019 19 KKGIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDN 98 (373)
T ss_pred hcCCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccc
Confidence 34688999999999999999999999874331 12333344433322 2578999999992111
Q ss_pred -----------HHhHHhhh--------------cCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCC
Q 029446 75 -----------RPLWRHYF--------------NNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQD 129 (193)
Q Consensus 75 -----------~~~~~~~~--------------~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 129 (193)
......++ ...++++|.+.++. .++..+.-..++-+. ....+|.|+.|+|
T Consensus 99 s~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptg-h~l~~~DIe~Mk~ls----~~vNlIPVI~KaD 173 (373)
T COG5019 99 SKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTG-HGLKPLDIEAMKRLS----KRVNLIPVIAKAD 173 (373)
T ss_pred cccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCC-CCCCHHHHHHHHHHh----cccCeeeeeeccc
Confidence 01111111 14799999999873 334444433333333 2455899999999
Q ss_pred CCCCCCH
Q 029446 130 MKGAMTP 136 (193)
Q Consensus 130 l~~~~~~ 136 (193)
....++.
T Consensus 174 ~lT~~El 180 (373)
T COG5019 174 TLTDDEL 180 (373)
T ss_pred cCCHHHH
Confidence 8876443
No 342
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=98.99 E-value=2.5e-09 Score=86.22 Aligned_cols=112 Identities=19% Similarity=0.194 Sum_probs=81.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCcccccc----------------ccceeEE---------EEEEcCEEEEEEecC
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVP----------------TIGFNVE---------KVQYKNVIFTVWDVG 69 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~~~~~----------------t~~~~~~---------~~~~~~~~~~i~D~~ 69 (193)
....+|+++|+-+.|||+|+..|.....++..+ ..|+.+. ....+..-+++.|||
T Consensus 126 ~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTP 205 (971)
T KOG0468|consen 126 ERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTP 205 (971)
T ss_pred ceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCC
Confidence 456799999999999999999998755432111 1112211 112245678999999
Q ss_pred CCCCCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCC
Q 029446 70 GQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMK 131 (193)
Q Consensus 70 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 131 (193)
|+..|-......++.+|++++++|+.+.-.+.. ...+...++ .+.|+.+|+||+|..
T Consensus 206 GHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlnt-Er~ikhaiq----~~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 206 GHVNFSDETTASLRLSDGVVLVVDVAEGVMLNT-ERIIKHAIQ----NRLPIVVVINKVDRL 262 (971)
T ss_pred CcccchHHHHHHhhhcceEEEEEEcccCceeeH-HHHHHHHHh----ccCcEEEEEehhHHH
Confidence 999999988888999999999999976544332 234444443 578999999999964
No 343
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.99 E-value=2.4e-09 Score=73.70 Aligned_cols=56 Identities=20% Similarity=0.213 Sum_probs=40.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEEEEE-cCEEEEEEecCC
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQY-KNVIFTVWDVGG 70 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~-~~~~~~i~D~~g 70 (193)
.....|+++|.+|+|||||+|++.+.......++.|.+.....+ ....+.+.||||
T Consensus 100 ~~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~~~~~~~~~liDtPG 156 (157)
T cd01858 100 KKQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQYITLMKRIYLIDCPG 156 (157)
T ss_pred ccceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEEEEcCCCEEEEECcC
Confidence 35688999999999999999999987765555555544332222 123588999998
No 344
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.99 E-value=3.9e-09 Score=80.33 Aligned_cols=120 Identities=14% Similarity=0.205 Sum_probs=75.3
Q ss_pred hcCCCccEEEEEcCCCCCHHHHHHHHhcCCcccc----------ccccceeEEEEEE--c--CEEEEEEecCCCCC----
Q 029446 12 FFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLST----------VPTIGFNVEKVQY--K--NVIFTVWDVGGQEK---- 73 (193)
Q Consensus 12 ~~~~~~~~v~v~G~~~~GKssli~~l~~~~~~~~----------~~t~~~~~~~~~~--~--~~~~~i~D~~g~~~---- 73 (193)
..+.-.|.+.++|+.|.|||||||+|+...+... ..|+.+....... + .+.+++.||||-.+
T Consensus 16 ~KkG~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdn 95 (366)
T KOG2655|consen 16 VKKGFDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDN 95 (366)
T ss_pred HhcCCceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccc
Confidence 3445679999999999999999999998754421 1233444444333 2 46788999999111
Q ss_pred ---C-------HHhHH-----------hhhc--CCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCC
Q 029446 74 ---L-------RPLWR-----------HYFN--NTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDM 130 (193)
Q Consensus 74 ---~-------~~~~~-----------~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl 130 (193)
+ ..... ..+. ..++++|.+.++. ..+..+.-..++-+. ....+|.|+.|.|.
T Consensus 96 s~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~g-hgL~p~Di~~Mk~l~----~~vNiIPVI~KaD~ 170 (366)
T KOG2655|consen 96 SNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTG-HGLKPLDIEFMKKLS----KKVNLIPVIAKADT 170 (366)
T ss_pred cccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCC-CCCcHhhHHHHHHHh----ccccccceeecccc
Confidence 0 00111 1122 5899999999863 334444433333333 35678999999998
Q ss_pred CCCCCH
Q 029446 131 KGAMTP 136 (193)
Q Consensus 131 ~~~~~~ 136 (193)
....+.
T Consensus 171 lT~~El 176 (366)
T KOG2655|consen 171 LTKDEL 176 (366)
T ss_pred CCHHHH
Confidence 875433
No 345
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.97 E-value=3e-09 Score=76.89 Aligned_cols=155 Identities=19% Similarity=0.072 Sum_probs=98.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCcc--ccc-cccceeEEEEEEcCEEEEEEecCCCCCC-------HHhHHhhhcCCC
Q 029446 17 EMRVVMLGLDAAGKTTILYKLHIGEVL--STV-PTIGFNVEKVQYKNVIFTVWDVGGQEKL-------RPLWRHYFNNTD 86 (193)
Q Consensus 17 ~~~v~v~G~~~~GKssli~~l~~~~~~--~~~-~t~~~~~~~~~~~~~~~~i~D~~g~~~~-------~~~~~~~~~~~d 86 (193)
.-+|.++|-|.+||||++..+.+.... .+. .|.......+.++.-++++.|.||--+- .+......+-|+
T Consensus 59 ~a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~qviavartcn 138 (358)
T KOG1487|consen 59 DARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQVIAVARTCN 138 (358)
T ss_pred ceeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccccceeeecCcchhcccccCCCCccEEEEEeeccc
Confidence 358999999999999999999876543 333 3333333456678889999999982221 112233446799
Q ss_pred EEEEEEECCChhhHHHHH-----------------------------------------HHHHHHHcCC-----------
Q 029446 87 GLIYVVDSLDRERIGKAK-----------------------------------------QEFQAIIKDP----------- 114 (193)
Q Consensus 87 ~~i~v~d~~~~~s~~~~~-----------------------------------------~~~~~~~~~~----------- 114 (193)
.+++|+|+..|-+...+. ..+.+....+
T Consensus 139 li~~vld~~kp~~hk~~ie~eleg~girlnk~pp~i~~kkKdkgGInlt~~~LdlD~~rsil~eyR~hsAdi~Lr~DaT~ 218 (358)
T KOG1487|consen 139 LIFIVLDVLKPLSHKKIIEKELEGFGIRLNKQPPNIGTKKKDKGGINLTGTHLDLDLQRSILSEYRIHSADIALRFDATA 218 (358)
T ss_pred EEEEEeeccCcccHHHHHHHhhhcceeeccCCCCCccccccccCceeeecchhhHHHHHHHHHHhhhcchheeeecCcch
Confidence 999999997632222211 1111111000
Q ss_pred -------CC--CCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHHHHHHHHHhhh
Q 029446 115 -------FM--LNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEMR 181 (193)
Q Consensus 115 -------~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~ 181 (193)
+. .-+|.|.+.||+|-..- +|+.-.... ....++||.+++|++++++.+.+.+.-.+
T Consensus 219 DdLIdvVegnr~yVp~iyvLNkIdsISi---EELdii~~i-------phavpISA~~~wn~d~lL~~mweyL~Lvr 284 (358)
T KOG1487|consen 219 DDLIDVVEGNRIYVPCIYVLNKIDSISI---EELDIIYTI-------PHAVPISAHTGWNFDKLLEKMWEYLKLVR 284 (358)
T ss_pred hhhhhhhccCceeeeeeeeecccceeee---eccceeeec-------cceeecccccccchHHHHHHHhhcchheE
Confidence 01 14688999999995543 222221211 14899999999999999999998875443
No 346
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.95 E-value=8.1e-10 Score=83.32 Aligned_cols=107 Identities=23% Similarity=0.193 Sum_probs=72.6
Q ss_pred HHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceE
Q 029446 75 RPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWH 154 (193)
Q Consensus 75 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 154 (193)
.......++.+|++++|+|+..+.+... ..+.+.. .++|+++|+||+|+.+....+++.+.+. ..+.+
T Consensus 15 ~~~l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~-----~~kp~iiVlNK~DL~~~~~~~~~~~~~~-----~~~~~ 82 (287)
T PRK09563 15 RREIKENLKLVDVVIEVLDARIPLSSEN--PMIDKII-----GNKPRLLILNKSDLADPEVTKKWIEYFE-----EQGIK 82 (287)
T ss_pred HHHHHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHh-----CCCCEEEEEEchhcCCHHHHHHHHHHHH-----HcCCe
Confidence 3345566789999999999976644222 2333333 2578999999999975422222322221 11346
Q ss_pred EEEeccccCCCHHHHHHHHHHHHHhhh----------------ccCCCCCCcCCC
Q 029446 155 IQGTCALKGDGLYEGLDWLASTLKEMR----------------AAGYSSVGTSSF 193 (193)
Q Consensus 155 ~~~~Sa~~~~gi~~~~~~l~~~~~~~~----------------~~~~~~~~~~~~ 193 (193)
++.+||+++.|++++.+.+.+.+.+.. --|.+++||||+
T Consensus 83 vi~vSa~~~~gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~G~pnvGKSsl 137 (287)
T PRK09563 83 ALAINAKKGQGVKKILKAAKKLLKEKNERRKAKGMRPRAIRAMIIGIPNVGKSTL 137 (287)
T ss_pred EEEEECCCcccHHHHHHHHHHHHHHHHhhhhhcccCcCceEEEEECCCCCCHHHH
Confidence 899999999999999999888775432 128899999874
No 347
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=98.92 E-value=2.9e-09 Score=83.77 Aligned_cols=131 Identities=23% Similarity=0.397 Sum_probs=97.4
Q ss_pred cccceeEEEEEE-cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCC----------hhhHHHHHHHHHHHHcCCC
Q 029446 47 PTIGFNVEKVQY-KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD----------RERIGKAKQEFQAIIKDPF 115 (193)
Q Consensus 47 ~t~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~ 115 (193)
+|.|+....+.+ ....+.++|++|+...++.|..++.+++++|||+++++ ...+.+....+..+.....
T Consensus 221 ~T~Gi~e~~f~~~~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~ 300 (389)
T PF00503_consen 221 KTTGITEIDFNFSGSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPW 300 (389)
T ss_dssp --SSEEEEEEEE-TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGG
T ss_pred CCCCeeEEEEEeecccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcc
Confidence 467888888888 99999999999999999999999999999999999863 2557888889999999888
Q ss_pred CCCCeEEEEEeCCCCCCC--------------------CCHhHH----HhhhCCCcCCC---CceEEEEeccccCCCHHH
Q 029446 116 MLNSVILVFANKQDMKGA--------------------MTPMEV----CEGLGLFDLKN---RKWHIQGTCALKGDGLYE 168 (193)
Q Consensus 116 ~~~~p~ivv~nK~Dl~~~--------------------~~~~~~----~~~~~~~~~~~---~~~~~~~~Sa~~~~gi~~ 168 (193)
..+.|+||++||.|+..+ ...+.. ...+....... +.+.+..++|.+-+++..
T Consensus 301 ~~~~~iil~lnK~D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~ 380 (389)
T PF00503_consen 301 FKNTPIILFLNKIDLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRK 380 (389)
T ss_dssp GTTSEEEEEEE-HHHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHH
T ss_pred cccCceEEeeecHHHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHH
Confidence 889999999999997531 111111 11111111111 556677888888888888
Q ss_pred HHHHHHHHH
Q 029446 169 GLDWLASTL 177 (193)
Q Consensus 169 ~~~~l~~~~ 177 (193)
+|+.+.+.+
T Consensus 381 v~~~v~~~i 389 (389)
T PF00503_consen 381 VFNAVKDII 389 (389)
T ss_dssp HHHHHHHHH
T ss_pred HHHHhcCcC
Confidence 888887653
No 348
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.90 E-value=7.3e-09 Score=78.62 Aligned_cols=155 Identities=23% Similarity=0.215 Sum_probs=99.5
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhcCCcc------------------------ccccccceeEE--EEEE--------
Q 029446 13 FGNSEMRVVMLGLDAAGKTTILYKLHIGEVL------------------------STVPTIGFNVE--KVQY-------- 58 (193)
Q Consensus 13 ~~~~~~~v~v~G~~~~GKssli~~l~~~~~~------------------------~~~~t~~~~~~--~~~~-------- 58 (193)
+.--.++++++|...+|||||+--|.++... ....+.|++.. .+++
T Consensus 163 QqfievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEE 242 (591)
T KOG1143|consen 163 QQFIEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEE 242 (591)
T ss_pred ccceEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHH
Confidence 3346789999999999999998888764321 01122232211 1122
Q ss_pred ----cCEEEEEEecCCCCCCHHhHHhhhcC--CCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 029446 59 ----KNVIFTVWDVGGQEKLRPLWRHYFNN--TDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKG 132 (193)
Q Consensus 59 ----~~~~~~i~D~~g~~~~~~~~~~~~~~--~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 132 (193)
...-+.+.|.+|+.+|.......+.. .|.++++++++....+..- ...-++.. .++|++++++|+|+.+
T Consensus 243 i~e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTr--EHLgl~~A---L~iPfFvlvtK~Dl~~ 317 (591)
T KOG1143|consen 243 IVEKSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTTR--EHLGLIAA---LNIPFFVLVTKMDLVD 317 (591)
T ss_pred HHhhhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccccH--HHHHHHHH---hCCCeEEEEEeecccc
Confidence 13468899999999998887766664 6899999999876544332 12222221 5799999999999997
Q ss_pred CCCHhHHHhhhC-------------------------CCcCCCCceEEEEeccccCCCHHHHHHH
Q 029446 133 AMTPMEVCEGLG-------------------------LFDLKNRKWHIQGTCALKGDGLYEGLDW 172 (193)
Q Consensus 133 ~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~Sa~~~~gi~~~~~~ 172 (193)
....+...+++. .........|+|.+|+.+|+|++-+-..
T Consensus 318 ~~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~f 382 (591)
T KOG1143|consen 318 RQGLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRTF 382 (591)
T ss_pred chhHHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHHH
Confidence 643322222221 0011234578999999999998765443
No 349
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=98.89 E-value=3.6e-09 Score=83.59 Aligned_cols=155 Identities=13% Similarity=0.248 Sum_probs=110.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccccccccceeEE---EEEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEE
Q 029446 16 SEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVE---KVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVV 92 (193)
Q Consensus 16 ~~~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~---~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (193)
.++|+.|+|..++|||+|+.++..+.+.....+.+..+. .+......+.+.|.+|..... +....|++|+||
T Consensus 29 pelk~givg~~~sgktalvhr~ltgty~~~e~~e~~~~kkE~vv~gqs~lLlirdeg~~~~aQ-----ft~wvdavIfvf 103 (749)
T KOG0705|consen 29 PELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGGRFKKEVVVDGQSHLLLIRDEGGHPDAQ-----FCQWVDAVVFVF 103 (749)
T ss_pred chhheeeeecccCCceeeeeeeccceeccccCCcCccceeeEEeeccceEeeeecccCCchhh-----hhhhccceEEEE
Confidence 568999999999999999999999888754444443332 233355677888888844322 446799999999
Q ss_pred ECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC-------CHhHHHhhhCCCcCCCCceEEEEeccccCCC
Q 029446 93 DSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM-------TPMEVCEGLGLFDLKNRKWHIQGTCALKGDG 165 (193)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 165 (193)
...+.++|+.+......+........+|.++++++.=..... ...+....+ .-..+|++++..|.+
T Consensus 104 ~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~-------krcsy~et~atyGln 176 (749)
T KOG0705|consen 104 SVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQM-------KRCSYYETCATYGLN 176 (749)
T ss_pred EeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhc-------Cccceeecchhhhhh
Confidence 999999999998777776654444668888888875332211 111222222 223699999999999
Q ss_pred HHHHHHHHHHHHHhhhc
Q 029446 166 LYEGLDWLASTLKEMRA 182 (193)
Q Consensus 166 i~~~~~~l~~~~~~~~~ 182 (193)
+..+|+.+..++...+.
T Consensus 177 v~rvf~~~~~k~i~~~~ 193 (749)
T KOG0705|consen 177 VERVFQEVAQKIVQLRK 193 (749)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999887765544
No 350
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.87 E-value=7.8e-09 Score=69.88 Aligned_cols=52 Identities=19% Similarity=0.280 Sum_probs=37.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccccccccce--eEEEEEEcCEEEEEEecCCC
Q 029446 19 RVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGF--NVEKVQYKNVIFTVWDVGGQ 71 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~--~~~~~~~~~~~~~i~D~~g~ 71 (193)
+++++|.+|+|||||+|++.+........+.+. ....+.... .+.+|||||-
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFLTP-TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEeCC-CEEEEECCCc
Confidence 899999999999999999998876543333332 223333333 6899999994
No 351
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=7.4e-08 Score=78.13 Aligned_cols=145 Identities=18% Similarity=0.231 Sum_probs=85.7
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhcCCccc--ccccccee--------------------------------------
Q 029446 13 FGNSEMRVVMLGLDAAGKTTILYKLHIGEVLS--TVPTIGFN-------------------------------------- 52 (193)
Q Consensus 13 ~~~~~~~v~v~G~~~~GKssli~~l~~~~~~~--~~~t~~~~-------------------------------------- 52 (193)
..+...||++.|..++||||++|++.-....+ ..+++.+.
T Consensus 105 l~r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~ 184 (749)
T KOG0448|consen 105 LARRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDK 184 (749)
T ss_pred HhhcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCccc
Confidence 34788999999999999999999997643221 11111100
Q ss_pred ------EEEEEEc-------CEEEEEEecCC---CCCCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCC
Q 029446 53 ------VEKVQYK-------NVIFTVWDVGG---QEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFM 116 (193)
Q Consensus 53 ------~~~~~~~-------~~~~~i~D~~g---~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~ 116 (193)
...+-+. .-.+.+.|.|| ......-...+..++|++|||.++.+.-+..+. +++.....
T Consensus 185 ~~~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek-~Ff~~vs~---- 259 (749)
T KOG0448|consen 185 DLGAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEK-QFFHKVSE---- 259 (749)
T ss_pred ccCcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHH-HHHHHhhc----
Confidence 0011110 12688999999 444555567777899999999999665433332 33333322
Q ss_pred CCCeEEEEEeCCCCCCCCC-H-hHHHh---hhCCCcCCCCceEEEEecccc
Q 029446 117 LNSVILVFANKQDMKGAMT-P-MEVCE---GLGLFDLKNRKWHIQGTCALK 162 (193)
Q Consensus 117 ~~~p~ivv~nK~Dl~~~~~-~-~~~~~---~~~~~~~~~~~~~~~~~Sa~~ 162 (193)
.+..+.|+.||.|...... . +.+.+ ++.....+.-.-.+|.+||+.
T Consensus 260 ~KpniFIlnnkwDasase~ec~e~V~~Qi~eL~v~~~~eA~DrvfFVS~~e 310 (749)
T KOG0448|consen 260 EKPNIFILNNKWDASASEPECKEDVLKQIHELSVVTEKEAADRVFFVSAKE 310 (749)
T ss_pred cCCcEEEEechhhhhcccHHHHHHHHHHHHhcCcccHhhhcCeeEEEeccc
Confidence 2344667778889876422 1 22222 333333333344588899664
No 352
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.84 E-value=5.8e-09 Score=76.13 Aligned_cols=158 Identities=13% Similarity=0.061 Sum_probs=96.5
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccc-cccceeEEEEEE-cCEEEEEEecCC----------CCCCHHhHH
Q 029446 13 FGNSEMRVVMLGLDAAGKTTILYKLHIGEVL-STV-PTIGFNVEKVQY-KNVIFTVWDVGG----------QEKLRPLWR 79 (193)
Q Consensus 13 ~~~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~-~t~~~~~~~~~~-~~~~~~i~D~~g----------~~~~~~~~~ 79 (193)
++++...+++.|..|+|||||+|.+...... ... ++.+-+...-.+ -+.++.+.|.|| .+++.....
T Consensus 132 Pk~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~~~~~~vDlPG~~~a~y~~~~~~d~~~~t~ 211 (320)
T KOG2486|consen 132 PKDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVGKSWYEVDLPGYGRAGYGFELPADWDKFTK 211 (320)
T ss_pred CCCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeeccceEEEEecCCcccccCCccCcchHhHhHH
Confidence 3567799999999999999999999876644 222 244444332222 357899999999 333445555
Q ss_pred hhhcC---CCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC------HhHHHhhhC--CCcC
Q 029446 80 HYFNN---TDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT------PMEVCEGLG--LFDL 148 (193)
Q Consensus 80 ~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~------~~~~~~~~~--~~~~ 148 (193)
.|+.+ --.+++.+|++-+ ++...-....++.+ .+.|..+|.||||...... ...+...+. ....
T Consensus 212 ~Y~leR~nLv~~FLLvd~sv~--i~~~D~~~i~~~ge---~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~~~ 286 (320)
T KOG2486|consen 212 SYLLERENLVRVFLLVDASVP--IQPTDNPEIAWLGE---NNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIRGV 286 (320)
T ss_pred HHHHhhhhhheeeeeeeccCC--CCCCChHHHHHHhh---cCCCeEEeeehhhhhhhccccccCccccceeehhhccccc
Confidence 55544 3455666677532 12222222233333 6899999999999765321 011111111 0111
Q ss_pred CCCceEEEEeccccCCCHHHHHHHHHH
Q 029446 149 KNRKWHIQGTCALKGDGLYEGLDWLAS 175 (193)
Q Consensus 149 ~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 175 (193)
.....|++.+|+.++.|++++.-.|.+
T Consensus 287 f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q 313 (320)
T KOG2486|consen 287 FLVDLPWIYVSSVTSLGRDLLLLHIAQ 313 (320)
T ss_pred eeccCCceeeecccccCceeeeeehhh
Confidence 234457888999999999988766654
No 353
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.82 E-value=1.3e-08 Score=77.93 Aligned_cols=56 Identities=21% Similarity=0.208 Sum_probs=43.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEEEEE-cCEEEEEEecCC
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQY-KNVIFTVWDVGG 70 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~-~~~~~~i~D~~g 70 (193)
....+++|+|.||+||||+||+|.+.....+.+..|.+-..... -...+.++||||
T Consensus 130 ~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~~~~i~LlDtPG 186 (322)
T COG1161 130 KRKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKLDDGIYLLDTPG 186 (322)
T ss_pred ccceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEEEEcCCCeEEecCCC
Confidence 35688999999999999999999998886655555666544333 233489999999
No 354
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.81 E-value=1.9e-08 Score=69.08 Aligned_cols=56 Identities=23% Similarity=0.291 Sum_probs=42.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEEEE-EcCEEEEEEecCC
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQ-YKNVIFTVWDVGG 70 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~-~~~~~~~i~D~~g 70 (193)
....+++++|.+++||||++|++.+.....+.++.+.+..... ..+..+.+|||||
T Consensus 99 ~~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~DtpG 155 (156)
T cd01859 99 GKEGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQLVKITSKIYLLDTPG 155 (156)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeeeEEEEcCCCEEEEECcC
Confidence 3567899999999999999999998766555666665543221 1234799999998
No 355
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.79 E-value=4.7e-09 Score=78.08 Aligned_cols=104 Identities=23% Similarity=0.221 Sum_probs=73.7
Q ss_pred hcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccc
Q 029446 82 FNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCAL 161 (193)
Q Consensus 82 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (193)
..+.|-+++++.+.+|+--..+...+.-+... .++..++++||+|+.++.+..+ .+ .....+..+++++.+|++
T Consensus 77 v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~---~gi~pvIvlnK~DL~~~~~~~~-~~--~~~~y~~~gy~v~~~s~~ 150 (301)
T COG1162 77 VANNDQAIIVVSLVDPDFNTNLLDRYLVLAEA---GGIEPVIVLNKIDLLDDEEAAV-KE--LLREYEDIGYPVLFVSAK 150 (301)
T ss_pred ccccceEEEEEeccCCCCCHHHHHHHHHHHHH---cCCcEEEEEEccccCcchHHHH-HH--HHHHHHhCCeeEEEecCc
Confidence 35688888888888775433333333333332 5677788899999998755543 11 112235678899999999
Q ss_pred cCCCHHHHHHHHHHHHHhhhccCCCCCCcCCC
Q 029446 162 KGDGLYEGLDWLASTLKEMRAAGYSSVGTSSF 193 (193)
Q Consensus 162 ~~~gi~~~~~~l~~~~~~~~~~~~~~~~~~~~ 193 (193)
+++|++++.+.+..++ ..-.|++++|||||
T Consensus 151 ~~~~~~~l~~~l~~~~--svl~GqSGVGKSSL 180 (301)
T COG1162 151 NGDGLEELAELLAGKI--TVLLGQSGVGKSTL 180 (301)
T ss_pred CcccHHHHHHHhcCCe--EEEECCCCCcHHHH
Confidence 9999999999988886 44559999999985
No 356
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.77 E-value=2.2e-08 Score=69.88 Aligned_cols=56 Identities=18% Similarity=0.268 Sum_probs=39.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccccccccceeE--EEEEEcCEEEEEEecCCC
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNV--EKVQYKNVIFTVWDVGGQ 71 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~--~~~~~~~~~~~i~D~~g~ 71 (193)
...++++++|.+|+|||||+|++.+.......+..+.+. ..+... ..+.+|||||-
T Consensus 113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~~-~~~~~iDtpG~ 170 (171)
T cd01856 113 PRGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKIS-PGIYLLDTPGI 170 (171)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEec-CCEEEEECCCC
Confidence 455799999999999999999999877643333333332 223332 56899999993
No 357
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.77 E-value=2.4e-08 Score=75.35 Aligned_cols=56 Identities=18% Similarity=0.330 Sum_probs=41.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEE--EEEcCEEEEEEecCCC
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEK--VQYKNVIFTVWDVGGQ 71 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~--~~~~~~~~~i~D~~g~ 71 (193)
...++++++|.+|+|||||+|++.+.......+..|.+... +.. +..+.++||||-
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~-~~~~~l~DtPGi 176 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWIKL-GKGLELLDTPGI 176 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEEEEe-CCcEEEEECCCc
Confidence 35689999999999999999999998765544444444332 222 346899999994
No 358
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.76 E-value=2.4e-08 Score=75.02 Aligned_cols=56 Identities=20% Similarity=0.293 Sum_probs=40.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccccccccceeEE--EEEEcCEEEEEEecCCC
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVE--KVQYKNVIFTVWDVGGQ 71 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~--~~~~~~~~~~i~D~~g~ 71 (193)
...++++++|.+|+|||||+|++.+.......+..|.+.. .+... ..+.++||||-
T Consensus 116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~-~~~~l~DtPG~ 173 (276)
T TIGR03596 116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIKLS-DGLELLDTPGI 173 (276)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEEEEeC-CCEEEEECCCc
Confidence 3568999999999999999999998775544333343332 23332 36799999995
No 359
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.75 E-value=9e-08 Score=73.81 Aligned_cols=78 Identities=19% Similarity=0.119 Sum_probs=57.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCc-c--cc-ccccceeEEEEEEc-----------------CEEEEEEecCCCCC---
Q 029446 18 MRVVMLGLDAAGKTTILYKLHIGEV-L--ST-VPTIGFNVEKVQYK-----------------NVIFTVWDVGGQEK--- 73 (193)
Q Consensus 18 ~~v~v~G~~~~GKssli~~l~~~~~-~--~~-~~t~~~~~~~~~~~-----------------~~~~~i~D~~g~~~--- 73 (193)
++++++|.|++|||||+|.+++... . .+ ..|...+...+... ...+.+.|.||-..
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 7899999999999999999998876 3 22 34455555555442 34789999999332
Q ss_pred ----CHHhHHhhhcCCCEEEEEEECC
Q 029446 74 ----LRPLWRHYFNNTDGLIYVVDSL 95 (193)
Q Consensus 74 ----~~~~~~~~~~~~d~~i~v~d~~ 95 (193)
........++++|+++.|+++.
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCC
Confidence 2223445568999999999985
No 360
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.74 E-value=3.8e-08 Score=70.52 Aligned_cols=116 Identities=14% Similarity=0.173 Sum_probs=68.4
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCcccc----------ccccceeEEE--EEEc--CEEEEEEecCCCCC------
Q 029446 14 GNSEMRVVMLGLDAAGKTTILYKLHIGEVLST----------VPTIGFNVEK--VQYK--NVIFTVWDVGGQEK------ 73 (193)
Q Consensus 14 ~~~~~~v~v~G~~~~GKssli~~l~~~~~~~~----------~~t~~~~~~~--~~~~--~~~~~i~D~~g~~~------ 73 (193)
..-.|+|.|+|..|.|||||+|.++....... ..|+.+...+ +.-+ ..++.+.||||-.+
T Consensus 43 ~GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~n 122 (336)
T KOG1547|consen 43 TGFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDN 122 (336)
T ss_pred ccCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccc
Confidence 45679999999999999999999987654321 1233333222 2223 45788999999211
Q ss_pred --------------------CHHhHHhhhc--CCCEEEEEEECCChhhHHHHH-HHHHHHHcCCCCCCCeEEEEEeCCCC
Q 029446 74 --------------------LRPLWRHYFN--NTDGLIYVVDSLDRERIGKAK-QEFQAIIKDPFMLNSVILVFANKQDM 130 (193)
Q Consensus 74 --------------------~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~Dl 130 (193)
....+...+. ..++++|.+.++. .++..+. ..++.+. .-..+|-|+.|.|-
T Consensus 123 cWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptG-hsLrplDieflkrLt-----~vvNvvPVIakaDt 196 (336)
T KOG1547|consen 123 CWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTG-HSLRPLDIEFLKRLT-----EVVNVVPVIAKADT 196 (336)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCC-CccCcccHHHHHHHh-----hhheeeeeEeeccc
Confidence 1111111122 3788899888873 2233332 2222322 12447889999997
Q ss_pred CCCCC
Q 029446 131 KGAMT 135 (193)
Q Consensus 131 ~~~~~ 135 (193)
..-++
T Consensus 197 lTleE 201 (336)
T KOG1547|consen 197 LTLEE 201 (336)
T ss_pred ccHHH
Confidence 65433
No 361
>PRK01889 GTPase RsgA; Reviewed
Probab=98.73 E-value=2.8e-08 Score=77.09 Aligned_cols=102 Identities=20% Similarity=0.223 Sum_probs=67.1
Q ss_pred hcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccc
Q 029446 82 FNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCAL 161 (193)
Q Consensus 82 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (193)
..++|.+++|+++..+-....+..++..+.. .+.|.++|+||+|+.+.. .+..+.+.. . ..+++++.+|++
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~----~~i~piIVLNK~DL~~~~--~~~~~~~~~--~-~~g~~Vi~vSa~ 180 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWE----SGAEPVIVLTKADLCEDA--EEKIAEVEA--L-APGVPVLAVSAL 180 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHH----cCCCEEEEEEChhcCCCH--HHHHHHHHH--h-CCCCcEEEEECC
Confidence 5789999999999744333344444444322 467789999999998641 112121211 1 346689999999
Q ss_pred cCCCHHHHHHHHHHHHHhhhccCCCCCCcCCC
Q 029446 162 KGDGLYEGLDWLASTLKEMRAAGYSSVGTSSF 193 (193)
Q Consensus 162 ~~~gi~~~~~~l~~~~~~~~~~~~~~~~~~~~ 193 (193)
++.|++++.+++..- ....--|.+++|||+|
T Consensus 181 ~g~gl~~L~~~L~~g-~~~~lvG~sgvGKStL 211 (356)
T PRK01889 181 DGEGLDVLAAWLSGG-KTVALLGSSGVGKSTL 211 (356)
T ss_pred CCccHHHHHHHhhcC-CEEEEECCCCccHHHH
Confidence 999999988887421 0123348899999864
No 362
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.72 E-value=3e-08 Score=70.38 Aligned_cols=54 Identities=24% Similarity=0.326 Sum_probs=36.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCcc--------ccccccceeEE--EEEEcCEEEEEEecCC
Q 029446 16 SEMRVVMLGLDAAGKTTILYKLHIGEVL--------STVPTIGFNVE--KVQYKNVIFTVWDVGG 70 (193)
Q Consensus 16 ~~~~v~v~G~~~~GKssli~~l~~~~~~--------~~~~t~~~~~~--~~~~~~~~~~i~D~~g 70 (193)
+...++++|.+|+|||||+|++.+.... ...+..|.+.. .+.... .+.++||||
T Consensus 126 ~~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~-~~~~~DtPG 189 (190)
T cd01855 126 KGGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN-GKKLYDTPG 189 (190)
T ss_pred cCCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC-CCEEEeCcC
Confidence 4568999999999999999999975421 11122233332 232222 589999999
No 363
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.65 E-value=1.1e-06 Score=64.09 Aligned_cols=84 Identities=18% Similarity=0.104 Sum_probs=56.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcC--Cccc----cccccceeEEEEEE---cCEEEEEEecCCCCCC------HHhHH
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHIG--EVLS----TVPTIGFNVEKVQY---KNVIFTVWDVGGQEKL------RPLWR 79 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~~--~~~~----~~~t~~~~~~~~~~---~~~~~~i~D~~g~~~~------~~~~~ 79 (193)
....-|.|+|++++|||+|+|.+.+. .+.. ...|.|+-...... ....+.++||+|-... .....
T Consensus 5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~ 84 (224)
T cd01851 5 FPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARL 84 (224)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHH
Confidence 34567899999999999999999998 5542 13344544433333 3578999999994432 22223
Q ss_pred hhhcC--CCEEEEEEECCChh
Q 029446 80 HYFNN--TDGLIYVVDSLDRE 98 (193)
Q Consensus 80 ~~~~~--~d~~i~v~d~~~~~ 98 (193)
..+.. ++++|+..+.....
T Consensus 85 ~~l~~llss~~i~n~~~~~~~ 105 (224)
T cd01851 85 FALATLLSSVLIYNSWETILG 105 (224)
T ss_pred HHHHHHHhCEEEEeccCcccH
Confidence 33334 88999888876443
No 364
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.64 E-value=1.3e-07 Score=64.92 Aligned_cols=53 Identities=19% Similarity=0.243 Sum_probs=37.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCcccc----ccccceeEEEEEEcCEEEEEEecCC
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHIGEVLST----VPTIGFNVEKVQYKNVIFTVWDVGG 70 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~~~----~~t~~~~~~~~~~~~~~~~i~D~~g 70 (193)
....+++++|.+|+|||||+|.+.+...... ..|..... +.. +..+.++||||
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~--~~~-~~~~~liDtPG 154 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQE--VKL-DNKIKLLDTPG 154 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEE--EEe-cCCEEEEECCC
Confidence 4678899999999999999999998664321 22333322 222 24689999998
No 365
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=98.63 E-value=2e-07 Score=76.44 Aligned_cols=107 Identities=17% Similarity=0.201 Sum_probs=77.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCc--c----------cc---ccccceeEEE----EEEcCEEEEEEecCCCCCCH
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHIGEV--L----------ST---VPTIGFNVEK----VQYKNVIFTVWDVGGQEKLR 75 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~~~~--~----------~~---~~t~~~~~~~----~~~~~~~~~i~D~~g~~~~~ 75 (193)
...=+++++.+..-|||||..+|....- + ++ .-+.|++... .-.++..+.++|+||+.+|.
T Consensus 7 ~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf~ 86 (887)
T KOG0467|consen 7 EGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDFS 86 (887)
T ss_pred CceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccchh
Confidence 4456899999999999999999976431 1 11 2233444332 22378999999999999999
Q ss_pred HhHHhhhcCCCEEEEEEECCCh---hhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCC
Q 029446 76 PLWRHYFNNTDGLIYVVDSLDR---ERIGKAKQEFQAIIKDPFMLNSVILVFANKQD 129 (193)
Q Consensus 76 ~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 129 (193)
+......+-+|++++++|+... ++..-+.+.|.+ +...|+|+||+|
T Consensus 87 sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~--------~~~~~lvinkid 135 (887)
T KOG0467|consen 87 SEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIE--------GLKPILVINKID 135 (887)
T ss_pred hhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHHc--------cCceEEEEehhh
Confidence 9999999999999999999754 333333333332 344799999999
No 366
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=98.61 E-value=1.2e-06 Score=69.99 Aligned_cols=81 Identities=11% Similarity=0.215 Sum_probs=56.5
Q ss_pred EEEEEEecCC-------------CCCCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeC
Q 029446 61 VIFTVWDVGG-------------QEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANK 127 (193)
Q Consensus 61 ~~~~i~D~~g-------------~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK 127 (193)
-++.++|.|| .+........+.++.+++|+|+.-. +.++-...+.++.......+...|+|+||
T Consensus 412 qRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDG---SVDAERSnVTDLVsq~DP~GrRTIfVLTK 488 (980)
T KOG0447|consen 412 QRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDG---SVDAERSIVTDLVSQMDPHGRRTIFVLTK 488 (980)
T ss_pred ceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccC---CcchhhhhHHHHHHhcCCCCCeeEEEEee
Confidence 3789999999 1122345678889999999999532 33444455556666556677889999999
Q ss_pred CCCCCC--CCHhHHHhhhC
Q 029446 128 QDMKGA--MTPMEVCEGLG 144 (193)
Q Consensus 128 ~Dl~~~--~~~~~~~~~~~ 144 (193)
.|+.+. ..+..+.+.+.
T Consensus 489 VDlAEknlA~PdRI~kIle 507 (980)
T KOG0447|consen 489 VDLAEKNVASPSRIQQIIE 507 (980)
T ss_pred cchhhhccCCHHHHHHHHh
Confidence 999875 34566666554
No 367
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.60 E-value=2.9e-07 Score=69.15 Aligned_cols=82 Identities=23% Similarity=0.372 Sum_probs=58.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCcc-cc--ccccceeEEEEEE-----------------cCEEEEEEecCCCCC-
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHIGEVL-ST--VPTIGFNVEKVQY-----------------KNVIFTVWDVGGQEK- 73 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~--~~t~~~~~~~~~~-----------------~~~~~~i~D~~g~~~- 73 (193)
...+++.+||.||+|||||+|.+++.... .+ ..|++.+...+.. -+..++++|++|-..
T Consensus 18 ~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkG 97 (391)
T KOG1491|consen 18 GNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKG 97 (391)
T ss_pred CCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccC
Confidence 36789999999999999999999987654 22 3466655554433 156899999988211
Q ss_pred ------CHHhHHhhhcCCCEEEEEEECCC
Q 029446 74 ------LRPLWRHYFNNTDGLIYVVDSLD 96 (193)
Q Consensus 74 ------~~~~~~~~~~~~d~~i~v~d~~~ 96 (193)
..-...+.++.+|+++-|+++..
T Consensus 98 As~G~GLGN~FLs~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 98 ASAGEGLGNKFLSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred cccCcCchHHHHHhhhhccceeEEEEecC
Confidence 11122334588999999998854
No 368
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.59 E-value=3.7e-07 Score=73.02 Aligned_cols=111 Identities=17% Similarity=0.127 Sum_probs=73.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEEEEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECC
Q 029446 16 SEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL 95 (193)
Q Consensus 16 ~~~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~ 95 (193)
-+|-|+|+|+||+||||||++|...-...+...+.--+..+..+..+++++.+|. .... .....+-+|.+++++|.+
T Consensus 68 PPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GPiTvvsgK~RRiTflEcp~--Dl~~-miDvaKIaDLVlLlIdgn 144 (1077)
T COG5192 68 PPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPITVVSGKTRRITFLECPS--DLHQ-MIDVAKIADLVLLLIDGN 144 (1077)
T ss_pred CCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCceEEeecceeEEEEEeChH--HHHH-HHhHHHhhheeEEEeccc
Confidence 4678899999999999999999865443332222223445566788999999993 2222 333447799999999997
Q ss_pred ChhhHHHHHHHHHHHHcCCCCCCCe-EEEEEeCCCCCCCC
Q 029446 96 DRERIGKAKQEFQAIIKDPFMLNSV-ILVFANKQDMKGAM 134 (193)
Q Consensus 96 ~~~s~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~ 134 (193)
-.-.++.. .+..++.. ++.| ++-|+|..|+....
T Consensus 145 fGfEMETm--EFLnil~~---HGmPrvlgV~ThlDlfk~~ 179 (1077)
T COG5192 145 FGFEMETM--EFLNILIS---HGMPRVLGVVTHLDLFKNP 179 (1077)
T ss_pred cCceehHH--HHHHHHhh---cCCCceEEEEeecccccCh
Confidence 54333332 23333332 4555 45789999998754
No 369
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.59 E-value=9e-07 Score=78.43 Aligned_cols=111 Identities=17% Similarity=0.223 Sum_probs=67.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCcccc-----ccc--cceeEEEEE-EcCEEEEEEecCC----C----CCCHHhHHhhh
Q 029446 19 RVVMLGLDAAGKTTILYKLHIGEVLST-----VPT--IGFNVEKVQ-YKNVIFTVWDVGG----Q----EKLRPLWRHYF 82 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~~~~~~~-----~~t--~~~~~~~~~-~~~~~~~i~D~~g----~----~~~~~~~~~~~ 82 (193)
=.+|+|++|+||||+++.. +-.++-. ..+ ++.+. ..+ +-.-+-+++||+| + +.....|..++
T Consensus 113 WYlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~-~c~wwf~~~avliDtaG~y~~~~~~~~~~~~~W~~fL 190 (1169)
T TIGR03348 113 WYLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTR-NCDWWFTDEAVLIDTAGRYTTQDSDPEEDAAAWLGFL 190 (1169)
T ss_pred CEEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCc-ccceEecCCEEEEcCCCccccCCCcccccHHHHHHHH
Confidence 4689999999999999886 4444311 011 11111 111 1234567999999 2 12334454444
Q ss_pred c---------CCCEEEEEEECCCh-----hhH----HHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 029446 83 N---------NTDGLIYVVDSLDR-----ERI----GKAKQEFQAIIKDPFMLNSVILVFANKQDMKG 132 (193)
Q Consensus 83 ~---------~~d~~i~v~d~~~~-----~s~----~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 132 (193)
. -.|++|+++|+.+. +.. ..+...+.++... -....|+.+++||+|+..
T Consensus 191 ~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~-lg~~~PVYvv~Tk~Dll~ 257 (1169)
T TIGR03348 191 GLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQ-LGARFPVYLVLTKADLLA 257 (1169)
T ss_pred HHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHH-hCCCCCEEEEEecchhhc
Confidence 3 48999999999643 111 2333444444333 235899999999999874
No 370
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.59 E-value=1.3e-07 Score=75.77 Aligned_cols=111 Identities=15% Similarity=0.176 Sum_probs=77.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCC-----cccc------------ccccceeE----EEEEEcCEEEEEEecCCCCCC
Q 029446 16 SEMRVVMLGLDAAGKTTILYKLHIGE-----VLST------------VPTIGFNV----EKVQYKNVIFTVWDVGGQEKL 74 (193)
Q Consensus 16 ~~~~v~v~G~~~~GKssli~~l~~~~-----~~~~------------~~t~~~~~----~~~~~~~~~~~i~D~~g~~~~ 74 (193)
+.=+|.++.+-.+||||+-+++.... +.+. ...-|++. ....|....+.++||||+-.|
T Consensus 38 k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDF 117 (721)
T KOG0465|consen 38 KIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDF 117 (721)
T ss_pred hhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeE
Confidence 33478999999999999998876421 1110 00112222 235567899999999999999
Q ss_pred HHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCC
Q 029446 75 RPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMK 131 (193)
Q Consensus 75 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 131 (193)
.......++-.|++++++|+...-.-+.. ..|.+..+ .++|.|..+||+|..
T Consensus 118 T~EVeRALrVlDGaVlvl~aV~GVqsQt~-tV~rQ~~r----y~vP~i~FiNKmDRm 169 (721)
T KOG0465|consen 118 TFEVERALRVLDGAVLVLDAVAGVESQTE-TVWRQMKR----YNVPRICFINKMDRM 169 (721)
T ss_pred EEEehhhhhhccCeEEEEEcccceehhhH-HHHHHHHh----cCCCeEEEEehhhhc
Confidence 98888889999999999998643221222 23334333 589999999999975
No 371
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=98.54 E-value=2.6e-07 Score=70.47 Aligned_cols=152 Identities=24% Similarity=0.205 Sum_probs=89.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCcc-----------------ccc--ccccee--------------------EEEEE
Q 029446 17 EMRVVMLGLDAAGKTTILYKLHIGEVL-----------------STV--PTIGFN--------------------VEKVQ 57 (193)
Q Consensus 17 ~~~v~v~G~~~~GKssli~~l~~~~~~-----------------~~~--~t~~~~--------------------~~~~~ 57 (193)
+.+|+|+|+..+|||||+--|..+... +.. +.+|-+ ...+.
T Consensus 133 E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWvk 212 (641)
T KOG0463|consen 133 EARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWVK 212 (641)
T ss_pred eEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCccccee
Confidence 469999999999999998766542210 111 111111 11111
Q ss_pred E---cCEEEEEEecCCCCCCHHhHHhhhc--CCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 029446 58 Y---KNVIFTVWDVGGQEKLRPLWRHYFN--NTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKG 132 (193)
Q Consensus 58 ~---~~~~~~i~D~~g~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 132 (193)
+ ...-+.++|.+|+++|.+...-... -.|..++++-++-.. +-...+-+--. -....|+++|.+|+|+.+
T Consensus 213 Ice~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGI-iGmTKEHLgLA----LaL~VPVfvVVTKIDMCP 287 (641)
T KOG0463|consen 213 ICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGI-IGMTKEHLGLA----LALHVPVFVVVTKIDMCP 287 (641)
T ss_pred eccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccc-eeccHHhhhhh----hhhcCcEEEEEEeeccCc
Confidence 1 1346889999999999887644433 368888888765321 00011111111 124789999999999988
Q ss_pred CCCHhHHHhhh----CCC---------------------cCCCCceEEEEeccccCCCHHHHHHHH
Q 029446 133 AMTPMEVCEGL----GLF---------------------DLKNRKWHIQGTCALKGDGLYEGLDWL 173 (193)
Q Consensus 133 ~~~~~~~~~~~----~~~---------------------~~~~~~~~~~~~Sa~~~~gi~~~~~~l 173 (193)
....+|-.+.+ ... ...++-+|+|.+|-.+|+|++-+..++
T Consensus 288 ANiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLkmFL 353 (641)
T KOG0463|consen 288 ANILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLKMFL 353 (641)
T ss_pred HHHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHHHHH
Confidence 65554433222 111 112234689999999999987654433
No 372
>PRK14974 cell division protein FtsY; Provisional
Probab=98.51 E-value=1.9e-06 Score=66.17 Aligned_cols=139 Identities=20% Similarity=0.252 Sum_probs=77.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcC----Ccc------cc------------ccccceeEEEE-----------------
Q 029446 16 SEMRVVMLGLDAAGKTTILYKLHIG----EVL------ST------------VPTIGFNVEKV----------------- 56 (193)
Q Consensus 16 ~~~~v~v~G~~~~GKssli~~l~~~----~~~------~~------------~~t~~~~~~~~----------------- 56 (193)
+...++++|.+|+||||++.++... ... ++ ....++.+...
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~ 218 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHA 218 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHH
Confidence 4678999999999999977777531 110 00 00111111110
Q ss_pred EEcCEEEEEEecCCCCCCHHhH----Hhh--hcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCC
Q 029446 57 QYKNVIFTVWDVGGQEKLRPLW----RHY--FNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDM 130 (193)
Q Consensus 57 ~~~~~~~~i~D~~g~~~~~~~~----~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl 130 (193)
...+..+.++||+|........ ... .-+.|.+++|+|+...+..-+....+.... .+--+++||.|.
T Consensus 219 ~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~~~~-------~~~giIlTKlD~ 291 (336)
T PRK14974 219 KARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFNEAV-------GIDGVILTKVDA 291 (336)
T ss_pred HhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHHHhcC-------CCCEEEEeeecC
Confidence 0124579999999976543222 111 125789999999975432222222222211 113588999998
Q ss_pred CCCCCH-hHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHH
Q 029446 131 KGAMTP-MEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLD 171 (193)
Q Consensus 131 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~ 171 (193)
...... -.+....+ .|+..++ +|++++++..
T Consensus 292 ~~~~G~~ls~~~~~~--------~Pi~~i~--~Gq~v~Dl~~ 323 (336)
T PRK14974 292 DAKGGAALSIAYVIG--------KPILFLG--VGQGYDDLIP 323 (336)
T ss_pred CCCccHHHHHHHHHC--------cCEEEEe--CCCChhhccc
Confidence 765322 22333332 3677776 7999987654
No 373
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.48 E-value=8.3e-08 Score=71.17 Aligned_cols=160 Identities=13% Similarity=0.086 Sum_probs=99.2
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhcCCccc----cc--cccceeEE--------------------------------
Q 029446 13 FGNSEMRVVMLGLDAAGKTTILYKLHIGEVLS----TV--PTIGFNVE-------------------------------- 54 (193)
Q Consensus 13 ~~~~~~~v~v~G~~~~GKssli~~l~~~~~~~----~~--~t~~~~~~-------------------------------- 54 (193)
..+..++|.-+|+..-||||+++.+++-+... .. .|...-|.
T Consensus 34 sRQATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~ 113 (466)
T KOG0466|consen 34 SRQATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCD 113 (466)
T ss_pred hheeeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCcc
Confidence 34567899999999999999999987732110 00 00000000
Q ss_pred ------EEEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCCh----hhHHHHHHHHHHHHcCCCCCCCeEEEE
Q 029446 55 ------KVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDR----ERIGKAKQEFQAIIKDPFMLNSVILVF 124 (193)
Q Consensus 55 ------~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----~s~~~~~~~~~~~~~~~~~~~~p~ivv 124 (193)
.+. --..+.+.|+||++-.-........--|++++++..+.+ ++-+.+.. .++. +-+.++++
T Consensus 114 ~~g~~~~~k-lvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaa--veiM-----~Lkhiiil 185 (466)
T KOG0466|consen 114 RPGCEGKMK-LVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAA--VEIM-----KLKHIIIL 185 (466)
T ss_pred cCCCCCceE-EEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHH--HHHh-----hhceEEEE
Confidence 000 023678999999976655544444456889999888753 33333221 1111 12348999
Q ss_pred EeCCCCCCCCCHhHHHhhhC-C-CcCCCCceEEEEeccccCCCHHHHHHHHHHHHHhh
Q 029446 125 ANKQDMKGAMTPMEVCEGLG-L-FDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEM 180 (193)
Q Consensus 125 ~nK~Dl~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~ 180 (193)
-||+|+..+....+.-+... . ......+.|++++||.-..|++.+.++|.+++.--
T Consensus 186 QNKiDli~e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPvP 243 (466)
T KOG0466|consen 186 QNKIDLIKESQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPVP 243 (466)
T ss_pred echhhhhhHHHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCCC
Confidence 99999988644322221111 0 11123566999999999999999999999988643
No 374
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=98.44 E-value=3.2e-07 Score=70.41 Aligned_cols=158 Identities=19% Similarity=0.153 Sum_probs=96.0
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcC--------------------Ccc--------------ccccccceeEEEEEEc
Q 029446 14 GNSEMRVVMLGLDAAGKTTILYKLHIG--------------------EVL--------------STVPTIGFNVEKVQYK 59 (193)
Q Consensus 14 ~~~~~~v~v~G~~~~GKssli~~l~~~--------------------~~~--------------~~~~t~~~~~~~~~~~ 59 (193)
+....++.++|+..+||||+-..+... .-+ ....|++.....+.-.
T Consensus 76 pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte 155 (501)
T KOG0459|consen 76 PKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETE 155 (501)
T ss_pred CCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEec
Confidence 467899999999999999986554320 000 0122333444444556
Q ss_pred CEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCCh---hhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--
Q 029446 60 NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDR---ERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM-- 134 (193)
Q Consensus 60 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~-- 134 (193)
...+.+.|+||+..|-........++|..++|+++... -.|+.--+.-.+..-.....-...|+++||+|-...+
T Consensus 156 ~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPtvnWs 235 (501)
T KOG0459|consen 156 NKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWS 235 (501)
T ss_pred ceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCccCcc
Confidence 78999999999999998888888899999999998532 1222221111111110011224479999999966421
Q ss_pred --CHhHHHhhhCCC----cC-CCCceEEEEeccccCCCHHHHHH
Q 029446 135 --TPMEVCEGLGLF----DL-KNRKWHIQGTCALKGDGLYEGLD 171 (193)
Q Consensus 135 --~~~~~~~~~~~~----~~-~~~~~~~~~~Sa~~~~gi~~~~~ 171 (193)
...+..+.+... -. -.....++++|..+|.++++...
T Consensus 236 ~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~ 279 (501)
T KOG0459|consen 236 NERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD 279 (501)
T ss_pred hhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence 122222222110 01 12445699999999999887543
No 375
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.44 E-value=4.3e-06 Score=65.99 Aligned_cols=111 Identities=20% Similarity=0.167 Sum_probs=64.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhc------CCcc----cc------------ccccceeEEEEE----------------
Q 029446 16 SEMRVVMLGLDAAGKTTILYKLHI------GEVL----ST------------VPTIGFNVEKVQ---------------- 57 (193)
Q Consensus 16 ~~~~v~v~G~~~~GKssli~~l~~------~~~~----~~------------~~t~~~~~~~~~---------------- 57 (193)
.+..|+++|.+|+||||++..|.. .... ++ ....++.+....
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~ 178 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKF 178 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHH
Confidence 356789999999999999998862 1110 11 011122222110
Q ss_pred -EcCEEEEEEecCCCCCCHHhHHhh------hcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCC
Q 029446 58 -YKNVIFTVWDVGGQEKLRPLWRHY------FNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDM 130 (193)
Q Consensus 58 -~~~~~~~i~D~~g~~~~~~~~~~~------~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl 130 (193)
.....+.++||+|........-.. ..+++.+++|+|++-.+.-.++...+.+. -.+--+|+||.|.
T Consensus 179 ~~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F~~~-------~~~~g~IlTKlD~ 251 (429)
T TIGR01425 179 KKENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAFKDS-------VDVGSVIITKLDG 251 (429)
T ss_pred HhCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHHHHHhc-------cCCcEEEEECccC
Confidence 025789999999976553322111 12478899999997543322222222221 1235688999997
Q ss_pred CCC
Q 029446 131 KGA 133 (193)
Q Consensus 131 ~~~ 133 (193)
...
T Consensus 252 ~ar 254 (429)
T TIGR01425 252 HAK 254 (429)
T ss_pred CCC
Confidence 654
No 376
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.44 E-value=5.4e-06 Score=63.38 Aligned_cols=139 Identities=17% Similarity=0.196 Sum_probs=78.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCcc----------cc------------ccccceeEEEE-----------------
Q 029446 16 SEMRVVMLGLDAAGKTTILYKLHIGEVL----------ST------------VPTIGFNVEKV----------------- 56 (193)
Q Consensus 16 ~~~~v~v~G~~~~GKssli~~l~~~~~~----------~~------------~~t~~~~~~~~----------------- 56 (193)
....++++|++|+||||++..+...... +. ....++.+...
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~ 192 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAA 192 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 4568899999999999999888652110 00 00011111111
Q ss_pred EEcCEEEEEEecCCCCCCHHh----HHhh--------hcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEE
Q 029446 57 QYKNVIFTVWDVGGQEKLRPL----WRHY--------FNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVF 124 (193)
Q Consensus 57 ~~~~~~~~i~D~~g~~~~~~~----~~~~--------~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv 124 (193)
......+.++||||....... .... -...+..++|+|++... +.+.+ .....+. -.+.-+|
T Consensus 193 ~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~--~~~~~-a~~f~~~----~~~~giI 265 (318)
T PRK10416 193 KARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ--NALSQ-AKAFHEA----VGLTGII 265 (318)
T ss_pred HhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh--HHHHH-HHHHHhh----CCCCEEE
Confidence 013568999999997653322 1111 12477899999998432 23322 2222211 1234689
Q ss_pred EeCCCCCCCCC-HhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHH
Q 029446 125 ANKQDMKGAMT-PMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLD 171 (193)
Q Consensus 125 ~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~ 171 (193)
+||.|....-. .-.+....+ .|+..++ +|++++++..
T Consensus 266 lTKlD~t~~~G~~l~~~~~~~--------~Pi~~v~--~Gq~~~Dl~~ 303 (318)
T PRK10416 266 LTKLDGTAKGGVVFAIADELG--------IPIKFIG--VGEGIDDLQP 303 (318)
T ss_pred EECCCCCCCccHHHHHHHHHC--------CCEEEEe--CCCChhhCcc
Confidence 99999665422 223333333 3777777 8888877654
No 377
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=98.44 E-value=6.5e-07 Score=67.44 Aligned_cols=142 Identities=21% Similarity=0.204 Sum_probs=88.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhc-------CCcccc--------ccccceeE--EEEEE--cCEEEEEEecCCCCCCHH
Q 029446 16 SEMRVVMLGLDAAGKTTILYKLHI-------GEVLST--------VPTIGFNV--EKVQY--KNVIFTVWDVGGQEKLRP 76 (193)
Q Consensus 16 ~~~~v~v~G~~~~GKssli~~l~~-------~~~~~~--------~~t~~~~~--~~~~~--~~~~~~i~D~~g~~~~~~ 76 (193)
-.++|.-+|+..-|||||...++. ..+..| ....|+++ ..+.+ ....+.=.|+||+.+|-+
T Consensus 53 PHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADYIK 132 (449)
T KOG0460|consen 53 PHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHADYIK 132 (449)
T ss_pred CcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHHHHH
Confidence 457999999999999999877754 111111 11223333 33333 456778899999999999
Q ss_pred hHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHh-----HHHhhhCCCcCCCC
Q 029446 77 LWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPM-----EVCEGLGLFDLKNR 151 (193)
Q Consensus 77 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~-----~~~~~~~~~~~~~~ 151 (193)
.....-..-|++|+|+.++|..=-+. ....-+.++.. -..+++.+||.|++++.+.. ++++.+...-+..-
T Consensus 133 NMItGaaqMDGaILVVaatDG~MPQT--rEHlLLArQVG--V~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf~Gd 208 (449)
T KOG0460|consen 133 NMITGAAQMDGAILVVAATDGPMPQT--REHLLLARQVG--VKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGFDGD 208 (449)
T ss_pred HhhcCccccCceEEEEEcCCCCCcch--HHHHHHHHHcC--CceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCCCCC
Confidence 98888788999999999987531111 11111222211 13478999999999654332 23333333333455
Q ss_pred ceEEEEeccc
Q 029446 152 KWHIQGTCAL 161 (193)
Q Consensus 152 ~~~~~~~Sa~ 161 (193)
+.|++.-||.
T Consensus 209 ~~PvI~GSAL 218 (449)
T KOG0460|consen 209 NTPVIRGSAL 218 (449)
T ss_pred CCCeeecchh
Confidence 6688876665
No 378
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.42 E-value=1.9e-06 Score=59.36 Aligned_cols=22 Identities=36% Similarity=0.466 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 029446 19 RVVMLGLDAAGKTTILYKLHIG 40 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~~ 40 (193)
-++++|..|+|||||++++...
T Consensus 2 ~~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 2 VTVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred EEEEEECCCCCHHHHHHHHHhc
Confidence 3679999999999999998764
No 379
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.42 E-value=1.2e-07 Score=66.08 Aligned_cols=105 Identities=16% Similarity=0.037 Sum_probs=56.9
Q ss_pred CEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcC--------CCC------
Q 029446 86 DGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDL--------KNR------ 151 (193)
Q Consensus 86 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~--------~~~------ 151 (193)
|++++|+|+.++.+-.. ..+.+.+.. ...+.|+|+|+||+|+.+.....++.+.+..... +..
T Consensus 1 DvVl~VvDar~p~~~~~--~~i~~~~~l-~~~~kp~IlVlNK~DL~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (172)
T cd04178 1 DVILEVLDARDPLGCRC--PQVEEAVLQ-AGGNKKLVLVLNKIDLVPKENVEKWLKYLRREFPTVAFKASTQSQKKNLGQ 77 (172)
T ss_pred CEEEEEEECCCCCCCCC--HHHHHHHHh-ccCCCCEEEEEehhhcCCHHHHHHHHHHHHhhCCEEEEEecccccccchhh
Confidence 78999999987533211 222222110 1146899999999999875444444433321100 000
Q ss_pred ------ceEEEEeccccCCCHHHHHHHHHHHHHhh--------hccCCCCCCcCCC
Q 029446 152 ------KWHIQGTCALKGDGLYEGLDWLASTLKEM--------RAAGYSSVGTSSF 193 (193)
Q Consensus 152 ------~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~--------~~~~~~~~~~~~~ 193 (193)
......+|+..+.|.+++++.+.+..... .--|.+++|||||
T Consensus 78 ~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vG~pnvGKSsl 133 (172)
T cd04178 78 KSVKVEAASADLLRSSVCFGADCLLKLLKNYSRNKDIKTSITVGVVGFPNVGKSSL 133 (172)
T ss_pred cccccchhhhhhhhhccccCHHHHHHHHHHHhhccccccCcEEEEEcCCCCCHHHH
Confidence 00112345555666777766665533322 1138999999975
No 380
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.42 E-value=5.6e-07 Score=66.40 Aligned_cols=64 Identities=14% Similarity=0.158 Sum_probs=40.6
Q ss_pred hhHHHHhhhhcCCCccEEEEEcCCCCCHHHHHHHHhcCCcccc-----------ccccceeEEEEEEcCEEEEEEecCCC
Q 029446 3 QAFRKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLST-----------VPTIGFNVEKVQYKNVIFTVWDVGGQ 71 (193)
Q Consensus 3 ~~~~~~~~~~~~~~~~~v~v~G~~~~GKssli~~l~~~~~~~~-----------~~t~~~~~~~~~~~~~~~~i~D~~g~ 71 (193)
..+..+++.... -.++++|.+|+|||||+|++.+.....+ ..|.......+ . ...++||||-
T Consensus 109 ~gi~eLf~~l~~---~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l--~--~~~liDtPG~ 181 (245)
T TIGR00157 109 DGLKELIEALQN---RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHF--H--GGLIADTPGF 181 (245)
T ss_pred hhHHHHHhhhcC---CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEc--C--CcEEEeCCCc
Confidence 345555554332 3789999999999999999998643221 12333333333 2 2389999995
Q ss_pred CC
Q 029446 72 EK 73 (193)
Q Consensus 72 ~~ 73 (193)
..
T Consensus 182 ~~ 183 (245)
T TIGR00157 182 NE 183 (245)
T ss_pred cc
Confidence 44
No 381
>PRK12289 GTPase RsgA; Reviewed
Probab=98.42 E-value=7.1e-07 Score=69.00 Aligned_cols=37 Identities=19% Similarity=0.303 Sum_probs=26.7
Q ss_pred hHHHHhhhhcCCCccEEEEEcCCCCCHHHHHHHHhcCCcc
Q 029446 4 AFRKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVL 43 (193)
Q Consensus 4 ~~~~~~~~~~~~~~~~v~v~G~~~~GKssli~~l~~~~~~ 43 (193)
.+..+++.... ..++++|.+|+|||||||+|.+....
T Consensus 162 GI~eL~~~L~~---ki~v~iG~SgVGKSSLIN~L~~~~~~ 198 (352)
T PRK12289 162 GLEALLEQLRN---KITVVAGPSGVGKSSLINRLIPDVEL 198 (352)
T ss_pred CHHHHhhhhcc---ceEEEEeCCCCCHHHHHHHHcCcccc
Confidence 34455444332 23899999999999999999976543
No 382
>PRK12288 GTPase RsgA; Reviewed
Probab=98.40 E-value=9.4e-07 Score=68.28 Aligned_cols=54 Identities=13% Similarity=0.134 Sum_probs=35.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccccc-----------cccceeEEEEEEcCEEEEEEecCCCCCCH
Q 029446 19 RVVMLGLDAAGKTTILYKLHIGEVLSTV-----------PTIGFNVEKVQYKNVIFTVWDVGGQEKLR 75 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~~~~~~~~-----------~t~~~~~~~~~~~~~~~~i~D~~g~~~~~ 75 (193)
.++++|.+|+|||||+|+|.+.....+. .|.......+..+ ..++||||-.++.
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~---~~liDTPGir~~~ 271 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHG---GDLIDSPGVREFG 271 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCC---CEEEECCCCCccc
Confidence 3789999999999999999986543221 1222222223222 3599999965443
No 383
>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]
Probab=98.40 E-value=2.5e-06 Score=62.20 Aligned_cols=134 Identities=24% Similarity=0.357 Sum_probs=94.2
Q ss_pred ccceeEEEEEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCC----------hhhHHHHHHHHHHHHcCCCCC
Q 029446 48 TIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD----------RERIGKAKQEFQAIIKDPFML 117 (193)
Q Consensus 48 t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~ 117 (193)
|.|+....++...+.+..+|.+||-.-+..|..++.+..++|+|+..+. ...+++....+..+-+....+
T Consensus 189 TsGIfet~FqVdkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~ 268 (379)
T KOG0099|consen 189 TSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLR 268 (379)
T ss_pred ccceeeEEEeccccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHh
Confidence 5677777888889999999999999999999999999999999998864 234555556666665555667
Q ss_pred CCeEEEEEeCCCCCCCC------------------------------CHhHHHhhhC------C-CcC---CCCceEEEE
Q 029446 118 NSVILVFANKQDMKGAM------------------------------TPMEVCEGLG------L-FDL---KNRKWHIQG 157 (193)
Q Consensus 118 ~~p~ivv~nK~Dl~~~~------------------------------~~~~~~~~~~------~-~~~---~~~~~~~~~ 157 (193)
.+.+|+.+||-|+..+. ++.-+...+- . .-+ ...-+.+..
T Consensus 269 tisvIlFLNKqDllaeKi~Agk~~i~dyFpEf~~y~~p~da~~es~~d~~v~raK~fird~FlRiSta~~Dg~h~CYpHF 348 (379)
T KOG0099|consen 269 TISVILFLNKQDLLAEKILAGKSKIEDYFPEFARYTTPEDATPESGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHF 348 (379)
T ss_pred hhheeEEecHHHHHHHHHHcchhhHHHhChHHhccCCccccCCCCCCChhhHHHHHhhhhhHhhhccccCCCceecccce
Confidence 78899999999986310 1111111110 0 000 112233555
Q ss_pred eccccCCCHHHHHHHHHHHHHhhh
Q 029446 158 TCALKGDGLYEGLDWLASTLKEMR 181 (193)
Q Consensus 158 ~Sa~~~~gi~~~~~~l~~~~~~~~ 181 (193)
+.|.+-++|..+|+-..+.+....
T Consensus 349 TcAvDTenIrrVFnDcrdiIqr~h 372 (379)
T KOG0099|consen 349 TCAVDTENIRRVFNDCRDIIQRMH 372 (379)
T ss_pred eEeechHHHHHHHHHHHHHHHHHH
Confidence 888889999999998888776554
No 384
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=98.39 E-value=1.3e-06 Score=61.68 Aligned_cols=115 Identities=16% Similarity=0.162 Sum_probs=62.9
Q ss_pred CEEEEEEecCCCCCCHHhH------HhhhcC---CCEEEEEEECC---Ch-hhHHHHHHHHHHHHcCCCCCCCeEEEEEe
Q 029446 60 NVIFTVWDVGGQEKLRPLW------RHYFNN---TDGLIYVVDSL---DR-ERIGKAKQEFQAIIKDPFMLNSVILVFAN 126 (193)
Q Consensus 60 ~~~~~i~D~~g~~~~~~~~------~~~~~~---~d~~i~v~d~~---~~-~s~~~~~~~~~~~~~~~~~~~~p~ivv~n 126 (193)
.-.+.++|+|||-+..... ...++. .-++++++|.. +. .-+......+...+. -..|.|=|++
T Consensus 97 eddylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi~----lE~P~INvls 172 (273)
T KOG1534|consen 97 EDDYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMIS----LEVPHINVLS 172 (273)
T ss_pred cCCEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHHHH----hcCcchhhhh
Confidence 3478999999987653321 111121 34556666653 11 111122222222222 4688999999
Q ss_pred CCCCCCCCCHhHHHhhhCCCc----------C-----------------CCCceEEEEeccccCCCHHHHHHHHHHHHH
Q 029446 127 KQDMKGAMTPMEVCEGLGLFD----------L-----------------KNRKWHIQGTCALKGDGLYEGLDWLASTLK 178 (193)
Q Consensus 127 K~Dl~~~~~~~~~~~~~~~~~----------~-----------------~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~ 178 (193)
|+|+......+++.+.+.... + ...-+.+++..+.+.+.++.++..|-..++
T Consensus 173 KMDLlk~~~k~~l~~Fl~~d~~~l~~~~~~~~~s~Kf~~L~~~i~~~v~d~~Mv~FlPl~~~~eeSi~~iL~~ID~aiQ 251 (273)
T KOG1534|consen 173 KMDLLKDKNKKELERFLNPDEYLLLEDSEINLRSPKFKKLTKCIAQLVDDYSMVNFLPLDSSDEESINIILSYIDDAIQ 251 (273)
T ss_pred HHHHhhhhhHHHHHHhcCCchhhhhcccccccccHHHHHHHHHHHHHhccccceeeeecCCCCHHHHHHHHHHHHHHHH
Confidence 999987533333333322110 0 011246788887788888888888777664
No 385
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=98.38 E-value=9.3e-08 Score=73.73 Aligned_cols=125 Identities=18% Similarity=0.149 Sum_probs=87.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcC--------Ccc---------ccccccceeE----EEEEEcCEEEEEEecCCCCCC
Q 029446 16 SEMRVVMLGLDAAGKTTILYKLHIG--------EVL---------STVPTIGFNV----EKVQYKNVIFTVWDVGGQEKL 74 (193)
Q Consensus 16 ~~~~v~v~G~~~~GKssli~~l~~~--------~~~---------~~~~t~~~~~----~~~~~~~~~~~i~D~~g~~~~ 74 (193)
+--+|.++.+-.+||||...++..- ... ......|+++ ..++|++.++.++||||+..|
T Consensus 36 kirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf 115 (753)
T KOG0464|consen 36 KIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDF 115 (753)
T ss_pred hhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceE
Confidence 3458999999999999998887531 111 0111223443 356778999999999999999
Q ss_pred HHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC---CCHhHHHhhhCC
Q 029446 75 RPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA---MTPMEVCEGLGL 145 (193)
Q Consensus 75 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~---~~~~~~~~~~~~ 145 (193)
+-....+++-.|+++.|||++-.-.-+.+. .|.+. ...++|-+.++||+|.... ...+.+.+.++.
T Consensus 116 ~leverclrvldgavav~dasagve~qtlt-vwrqa----dk~~ip~~~finkmdk~~anfe~avdsi~ekl~a 184 (753)
T KOG0464|consen 116 RLEVERCLRVLDGAVAVFDASAGVEAQTLT-VWRQA----DKFKIPAHCFINKMDKLAANFENAVDSIEEKLGA 184 (753)
T ss_pred EEEHHHHHHHhcCeEEEEeccCCcccceee-eehhc----cccCCchhhhhhhhhhhhhhhhhHHHHHHHHhCC
Confidence 999999999999999999997543222222 23332 2357899999999997653 233455555553
No 386
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.35 E-value=1.1e-06 Score=68.35 Aligned_cols=55 Identities=20% Similarity=0.366 Sum_probs=36.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCc-----cccccccceeEE--EEEEcCEEEEEEecCCCCC
Q 029446 18 MRVVMLGLDAAGKTTILYKLHIGEV-----LSTVPTIGFNVE--KVQYKNVIFTVWDVGGQEK 73 (193)
Q Consensus 18 ~~v~v~G~~~~GKssli~~l~~~~~-----~~~~~t~~~~~~--~~~~~~~~~~i~D~~g~~~ 73 (193)
-+++++|.+|+|||||+|++.+... ....+..+.+.. .+.. .-.+.++||||-..
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~-~~~~~l~DtPG~~~ 216 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPL-DDGHSLYDTPGIIN 216 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEe-CCCCEEEECCCCCC
Confidence 5899999999999999999997532 111222233322 2222 23467999999543
No 387
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.34 E-value=3.6e-05 Score=57.72 Aligned_cols=139 Identities=16% Similarity=0.176 Sum_probs=78.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCcc----------cc------------ccccceeEEEE-----------------
Q 029446 16 SEMRVVMLGLDAAGKTTILYKLHIGEVL----------ST------------VPTIGFNVEKV----------------- 56 (193)
Q Consensus 16 ~~~~v~v~G~~~~GKssli~~l~~~~~~----------~~------------~~t~~~~~~~~----------------- 56 (193)
..-.++++|++|+||||.+..+...-.. +. ....+..+...
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~~ 150 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKA 150 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHHH
Confidence 3457889999999999998877531100 00 00111111100
Q ss_pred EEcCEEEEEEecCCCCCCHHhHHh-------hh-----cCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEE
Q 029446 57 QYKNVIFTVWDVGGQEKLRPLWRH-------YF-----NNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVF 124 (193)
Q Consensus 57 ~~~~~~~~i~D~~g~~~~~~~~~~-------~~-----~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv 124 (193)
...+..+.++||||.......... .. ..+|.+++|+|++... +.+. ....+.+.. .+--+|
T Consensus 151 ~~~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~--~~~~-~~~~f~~~~----~~~g~I 223 (272)
T TIGR00064 151 KARNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQ--NALE-QAKVFNEAV----GLTGII 223 (272)
T ss_pred HHCCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCH--HHHH-HHHHHHhhC----CCCEEE
Confidence 013578999999997764433221 11 1389999999997432 2222 223332211 124689
Q ss_pred EeCCCCCCCCCH-hHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHH
Q 029446 125 ANKQDMKGAMTP-MEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLD 171 (193)
Q Consensus 125 ~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~ 171 (193)
.||.|....... -.+....+ .|+..++ +|++++++..
T Consensus 224 lTKlDe~~~~G~~l~~~~~~~--------~Pi~~~~--~Gq~~~dl~~ 261 (272)
T TIGR00064 224 LTKLDGTAKGGIILSIAYELK--------LPIKFIG--VGEKIDDLAP 261 (272)
T ss_pred EEccCCCCCccHHHHHHHHHC--------cCEEEEe--CCCChHhCcc
Confidence 999998665322 23333333 3677776 7888877644
No 388
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.33 E-value=1.3e-06 Score=59.87 Aligned_cols=35 Identities=23% Similarity=0.407 Sum_probs=26.1
Q ss_pred hHHHHhhhhcCCCccEEEEEcCCCCCHHHHHHHHhcCC
Q 029446 4 AFRKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGE 41 (193)
Q Consensus 4 ~~~~~~~~~~~~~~~~v~v~G~~~~GKssli~~l~~~~ 41 (193)
.+..+.+.... -.++++|+.|||||||+|.|.+..
T Consensus 25 g~~~l~~~l~~---k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 25 GIEELKELLKG---KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp THHHHHHHHTT---SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CHHHHHHHhcC---CEEEEECCCCCCHHHHHHHHHhhc
Confidence 34444443332 467899999999999999999874
No 389
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.29 E-value=2.3e-06 Score=62.88 Aligned_cols=119 Identities=13% Similarity=0.215 Sum_probs=75.8
Q ss_pred hhcCCCccEEEEEcCCCCCHHHHHHHHhcCCcccc-----ccccceeEEEEEE--c--CEEEEEEecCCC-------CCC
Q 029446 11 VFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLST-----VPTIGFNVEKVQY--K--NVIFTVWDVGGQ-------EKL 74 (193)
Q Consensus 11 ~~~~~~~~~v~v~G~~~~GKssli~~l~~~~~~~~-----~~t~~~~~~~~~~--~--~~~~~i~D~~g~-------~~~ 74 (193)
+....-.|+|+-+|..|.||||||+.|++-.+... .|++.....++.. . .+++.+.||.|- +.|
T Consensus 36 sv~~GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Sy 115 (406)
T KOG3859|consen 36 SVSQGFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSY 115 (406)
T ss_pred HHhcCceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCccccc
Confidence 34556789999999999999999999999776532 3444444433332 2 467899999991 111
Q ss_pred HH-------hHHhhh-------------c--CCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 029446 75 RP-------LWRHYF-------------N--NTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKG 132 (193)
Q Consensus 75 ~~-------~~~~~~-------------~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 132 (193)
.. ....|+ + .+++++|.+.++ ..++..+.-....-+. ....+|.|+.|.|...
T Consensus 116 k~iVdyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PT-GH~LKslDLvtmk~Ld----skVNIIPvIAKaDtis 190 (406)
T KOG3859|consen 116 KPIVDYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPT-GHSLKSLDLVTMKKLD----SKVNIIPVIAKADTIS 190 (406)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCC-CcchhHHHHHHHHHHh----hhhhhHHHHHHhhhhh
Confidence 11 111111 1 478888888887 4455555543333333 3455788889999776
Q ss_pred CC
Q 029446 133 AM 134 (193)
Q Consensus 133 ~~ 134 (193)
..
T Consensus 191 K~ 192 (406)
T KOG3859|consen 191 KE 192 (406)
T ss_pred HH
Confidence 53
No 390
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=98.24 E-value=3.6e-05 Score=60.07 Aligned_cols=155 Identities=15% Similarity=0.147 Sum_probs=84.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCc-----------------c-----ccccccceeE-----EEEEE---cCEEEE
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHIGEV-----------------L-----STVPTIGFNV-----EKVQY---KNVIFT 64 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~~~~-----------------~-----~~~~t~~~~~-----~~~~~---~~~~~~ 64 (193)
...+=++|||+.-+||||||++|..-.. + .+..|+...+ ..+.. -.++++
T Consensus 15 ~GdIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVR 94 (492)
T PF09547_consen 15 GGDIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVR 94 (492)
T ss_pred CCceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEE
Confidence 4567789999999999999999976211 1 1122333222 12322 367899
Q ss_pred EEecCC-------------CCC------------CHHh----HHhhhc--CCCEEEEEEECC----ChhhHHHHHHHHHH
Q 029446 65 VWDVGG-------------QEK------------LRPL----WRHYFN--NTDGLIYVVDSL----DRERIGKAKQEFQA 109 (193)
Q Consensus 65 i~D~~g-------------~~~------------~~~~----~~~~~~--~~d~~i~v~d~~----~~~s~~~~~~~~~~ 109 (193)
+.|+.| .++ |..- ++..++ ..-++++.-|.+ .++.+.+..+....
T Consensus 95 LiDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~ 174 (492)
T PF09547_consen 95 LIDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIE 174 (492)
T ss_pred EEeecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHH
Confidence 999988 011 1100 011111 123444444554 24455555544444
Q ss_pred HHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHHHHHHHHH
Q 029446 110 IIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLK 178 (193)
Q Consensus 110 ~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~ 178 (193)
.++. -++|+++++|-.+-..+ +..++.+.+. +++++++++++|..- .-+++...|.+.++
T Consensus 175 ELk~---igKPFvillNs~~P~s~-et~~L~~eL~----ekY~vpVlpvnc~~l-~~~DI~~Il~~vLy 234 (492)
T PF09547_consen 175 ELKE---IGKPFVILLNSTKPYSE-ETQELAEELE----EKYDVPVLPVNCEQL-REEDITRILEEVLY 234 (492)
T ss_pred HHHH---hCCCEEEEEeCCCCCCH-HHHHHHHHHH----HHhCCcEEEeehHHc-CHHHHHHHHHHHHh
Confidence 4443 58999999998874433 3334444442 456678888877532 23444444444443
No 391
>PRK13796 GTPase YqeH; Provisional
Probab=98.23 E-value=1.9e-06 Score=67.19 Aligned_cols=54 Identities=17% Similarity=0.262 Sum_probs=34.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCc-----cccccccceeEE--EEEEcCEEEEEEecCCC
Q 029446 17 EMRVVMLGLDAAGKTTILYKLHIGEV-----LSTVPTIGFNVE--KVQYKNVIFTVWDVGGQ 71 (193)
Q Consensus 17 ~~~v~v~G~~~~GKssli~~l~~~~~-----~~~~~t~~~~~~--~~~~~~~~~~i~D~~g~ 71 (193)
.-+++++|.+|+|||||||+|..... ....+..|.+.. .+... -...++||||-
T Consensus 160 ~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~-~~~~l~DTPGi 220 (365)
T PRK13796 160 GRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLD-DGSFLYDTPGI 220 (365)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcC-CCcEEEECCCc
Confidence 35899999999999999999985431 111222222322 22222 12479999995
No 392
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.23 E-value=0.00011 Score=49.96 Aligned_cols=26 Identities=27% Similarity=0.461 Sum_probs=22.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcC
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHIG 40 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~~ 40 (193)
...++|.|.|+||+||||++.++.+.
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e~ 28 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAEK 28 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHHH
Confidence 35689999999999999999888753
No 393
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.21 E-value=1.2e-06 Score=67.08 Aligned_cols=116 Identities=20% Similarity=0.152 Sum_probs=76.6
Q ss_pred ecCCC-CCCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCC
Q 029446 67 DVGGQ-EKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGL 145 (193)
Q Consensus 67 D~~g~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~ 145 (193)
+.||+ .++.......+...|+++.|+|+.++.+... ..+..+.. +.|.++|+||.|+.+.....++.+.+..
T Consensus 16 ~~~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~~--~~l~~~v~-----~k~~i~vlNK~DL~~~~~~~~W~~~~~~ 88 (322)
T COG1161 16 WFPGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRN--PELERIVK-----EKPKLLVLNKADLAPKEVTKKWKKYFKK 88 (322)
T ss_pred CCCCchHHHHHHHHHhcccCCEEEEEEeccccccccC--ccHHHHHc-----cCCcEEEEehhhcCCHHHHHHHHHHHHh
Confidence 33664 4566777888899999999999988765333 23444433 3445999999999997666677766654
Q ss_pred CcCCCCceEEEEeccccCCCHHHHHH-------HHHHHHHhhh---------ccCCCCCCcCCC
Q 029446 146 FDLKNRKWHIQGTCALKGDGLYEGLD-------WLASTLKEMR---------AAGYSSVGTSSF 193 (193)
Q Consensus 146 ~~~~~~~~~~~~~Sa~~~~gi~~~~~-------~l~~~~~~~~---------~~~~~~~~~~~~ 193 (193)
. .+...+.++++.+.+...+.. ...+.+.... .-|.|++||||+
T Consensus 89 ~----~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~v~vvG~PNVGKSsl 148 (322)
T COG1161 89 E----EGIKPIFVSAKSRQGGKKIRKALEKLSEEKIKRLKKKGLLKRKIRVGVVGYPNVGKSTL 148 (322)
T ss_pred c----CCCccEEEEeecccCccchHHHHHHHHHHHHHHHhhcCCCccceEEEEEcCCCCcHHHH
Confidence 3 144567788888877666553 2222222221 128999999974
No 394
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=98.21 E-value=1.7e-06 Score=68.34 Aligned_cols=53 Identities=19% Similarity=0.221 Sum_probs=43.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCcccccccccee--EEEEEEcCEEEEEEecCC
Q 029446 17 EMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFN--VEKVQYKNVIFTVWDVGG 70 (193)
Q Consensus 17 ~~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~--~~~~~~~~~~~~i~D~~g 70 (193)
.+.|++||.||+||||+||+|.+........|.|-+ +.++.. .-.+.+.|+||
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~l-s~~v~LCDCPG 368 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFL-SPSVCLCDCPG 368 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEc-CCCceecCCCC
Confidence 589999999999999999999999988777777755 344433 45688999999
No 395
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.20 E-value=2.8e-05 Score=55.45 Aligned_cols=133 Identities=17% Similarity=0.186 Sum_probs=71.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc----------------------cccccceeEEEEE-----------------E
Q 029446 18 MRVVMLGLDAAGKTTILYKLHIGEVLS----------------------TVPTIGFNVEKVQ-----------------Y 58 (193)
Q Consensus 18 ~~v~v~G~~~~GKssli~~l~~~~~~~----------------------~~~t~~~~~~~~~-----------------~ 58 (193)
..++++|+.|+||||.+-+|....... +....++.+.... .
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~~ 81 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFRK 81 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHhh
Confidence 358899999999999988875421100 0111122222111 1
Q ss_pred cCEEEEEEecCCCCCCHHhH----Hhhh--cCCCEEEEEEECCChhh-HHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCC
Q 029446 59 KNVIFTVWDVGGQEKLRPLW----RHYF--NNTDGLIYVVDSLDRER-IGKAKQEFQAIIKDPFMLNSVILVFANKQDMK 131 (193)
Q Consensus 59 ~~~~~~i~D~~g~~~~~~~~----~~~~--~~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 131 (193)
++..+.++||+|........ ..++ ...+-+++|++++.... ++.+......+ . . -=++.||.|..
T Consensus 82 ~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~~~~-~------~-~~lIlTKlDet 153 (196)
T PF00448_consen 82 KGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAFYEAF-G------I-DGLILTKLDET 153 (196)
T ss_dssp TTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHHHHHS-S------T-CEEEEESTTSS
T ss_pred cCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHHhhcc-c------C-ceEEEEeecCC
Confidence 24679999999977654332 1111 15789999999975432 22222222111 1 1 13669999976
Q ss_pred CCCCH-hHHHhhhCCCcCCCCceEEEEeccccCCCHHH
Q 029446 132 GAMTP-MEVCEGLGLFDLKNRKWHIQGTCALKGDGLYE 168 (193)
Q Consensus 132 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 168 (193)
..... -.+....+. |+-.++ +|++|++
T Consensus 154 ~~~G~~l~~~~~~~~--------Pi~~it--~Gq~V~D 181 (196)
T PF00448_consen 154 ARLGALLSLAYESGL--------PISYIT--TGQRVDD 181 (196)
T ss_dssp STTHHHHHHHHHHTS--------EEEEEE--SSSSTTG
T ss_pred CCcccceeHHHHhCC--------CeEEEE--CCCChhc
Confidence 65321 223333333 555555 5666643
No 396
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=98.16 E-value=2.9e-05 Score=52.84 Aligned_cols=58 Identities=17% Similarity=0.142 Sum_probs=36.0
Q ss_pred CEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCC
Q 029446 60 NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQD 129 (193)
Q Consensus 60 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 129 (193)
...+.+.||+|..... ..++..+|-++++..+.-.+.+.-+.- ..... --++++||.|
T Consensus 91 ~~D~iiIDtaG~~~~~---~~~~~~Ad~~ivv~tpe~~D~y~~~k~---~~~~~------~~~~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVGQSE---VDIASMADTTVVVMAPGAGDDIQAIKA---GIMEI------ADIVVVNKAD 148 (148)
T ss_pred CCCEEEEECCccChhh---hhHHHhCCEEEEEECCCchhHHHHhhh---hHhhh------cCEEEEeCCC
Confidence 5689999998865322 236788999999988763222222211 11111 1379999998
No 397
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.15 E-value=6.7e-06 Score=62.15 Aligned_cols=56 Identities=20% Similarity=0.135 Sum_probs=35.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccccccc---------cceeEEEEEEcCEEEEEEecCCCCCC
Q 029446 18 MRVVMLGLDAAGKTTILYKLHIGEVLSTVPT---------IGFNVEKVQYKNVIFTVWDVGGQEKL 74 (193)
Q Consensus 18 ~~v~v~G~~~~GKssli~~l~~~~~~~~~~t---------~~~~~~~~~~~~~~~~i~D~~g~~~~ 74 (193)
-.++++|++|+|||||+|.+.+......... +......+.... ...++||||..++
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~-~~~liDtPG~~~~ 226 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPG-GGLLIDTPGFREF 226 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCC-CCEEEECCCCCcc
Confidence 5789999999999999999998654322110 011111222221 2369999997654
No 398
>PRK00098 GTPase RsgA; Reviewed
Probab=98.14 E-value=7.9e-06 Score=62.11 Aligned_cols=37 Identities=24% Similarity=0.277 Sum_probs=26.9
Q ss_pred hHHHHhhhhcCCCccEEEEEcCCCCCHHHHHHHHhcCCcc
Q 029446 4 AFRKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVL 43 (193)
Q Consensus 4 ~~~~~~~~~~~~~~~~v~v~G~~~~GKssli~~l~~~~~~ 43 (193)
.+..+++... .-.++++|++|+|||||+|.+.+....
T Consensus 154 gi~~L~~~l~---gk~~~~~G~sgvGKStlin~l~~~~~~ 190 (298)
T PRK00098 154 GLDELKPLLA---GKVTVLAGQSGVGKSTLLNALAPDLEL 190 (298)
T ss_pred cHHHHHhhcc---CceEEEECCCCCCHHHHHHHHhCCcCC
Confidence 3444444332 346899999999999999999976543
No 399
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.12 E-value=8.1e-05 Score=58.89 Aligned_cols=132 Identities=14% Similarity=0.188 Sum_probs=71.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCcc-----c----ccc---------------ccceeEEEE-----------EEcCE
Q 029446 17 EMRVVMLGLDAAGKTTILYKLHIGEVL-----S----TVP---------------TIGFNVEKV-----------QYKNV 61 (193)
Q Consensus 17 ~~~v~v~G~~~~GKssli~~l~~~~~~-----~----~~~---------------t~~~~~~~~-----------~~~~~ 61 (193)
.-.++++|+.|+||||++..|.+.... . ... ..++..... ...+.
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~~ 270 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRGK 270 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcCC
Confidence 458999999999999999987653110 0 000 111111111 11356
Q ss_pred EEEEEecCCCCCCHHhH----Hhhh--cCCCEEEEEEECCC-hhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC
Q 029446 62 IFTVWDVGGQEKLRPLW----RHYF--NNTDGLIYVVDSLD-RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM 134 (193)
Q Consensus 62 ~~~i~D~~g~~~~~~~~----~~~~--~~~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~ 134 (193)
.+.++||+|........ ..+. ....-.++|+|++. ...+..+ +..+.. -.+-=+++||.|.....
T Consensus 271 d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~---~~~f~~-----~~~~~~I~TKlDEt~~~ 342 (420)
T PRK14721 271 HMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEV---ISAYQG-----HGIHGCIITKVDEAASL 342 (420)
T ss_pred CEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHH---HHHhcC-----CCCCEEEEEeeeCCCCc
Confidence 78999999976643221 2221 12456789999973 3333332 222211 11124789999977653
Q ss_pred C-HhHHHhhhCCCcCCCCceEEEEeccccCCCH
Q 029446 135 T-PMEVCEGLGLFDLKNRKWHIQGTCALKGDGL 166 (193)
Q Consensus 135 ~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 166 (193)
- .-.+....++ |+..++ +|++|
T Consensus 343 G~~l~~~~~~~l--------Pi~yvt--~Gq~V 365 (420)
T PRK14721 343 GIALDAVIRRKL--------VLHYVT--NGQKV 365 (420)
T ss_pred cHHHHHHHHhCC--------CEEEEE--CCCCc
Confidence 2 2233333333 455554 67777
No 400
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=98.11 E-value=8.4e-05 Score=59.22 Aligned_cols=111 Identities=22% Similarity=0.219 Sum_probs=62.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCC----c-c-----cc-cc-----------ccceeEEEE---------------E
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHIGE----V-L-----ST-VP-----------TIGFNVEKV---------------Q 57 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~~~----~-~-----~~-~~-----------t~~~~~~~~---------------~ 57 (193)
..+..|+++|.+|+||||.+..+...- . . ++ -+ ..++.+... .
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~ 172 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEK 172 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHH
Confidence 346789999999999999988775310 0 0 00 00 011111110 0
Q ss_pred EcCEEEEEEecCCCCCCHHhH------HhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCe-EEEEEeCCCC
Q 029446 58 YKNVIFTVWDVGGQEKLRPLW------RHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSV-ILVFANKQDM 130 (193)
Q Consensus 58 ~~~~~~~i~D~~g~~~~~~~~------~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl 130 (193)
.....+.++||+|........ ......+|.+++|+|++... ........+.. ..+ .-+|.||.|.
T Consensus 173 ~~~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~av~~a~~F~~-----~l~i~gvIlTKlD~ 244 (437)
T PRK00771 173 FKKADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QAKNQAKAFHE-----AVGIGGIIITKLDG 244 (437)
T ss_pred hhcCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HHHHHHHHHHh-----cCCCCEEEEecccC
Confidence 013478999999976653321 11233689999999997643 22222233211 122 2478899997
Q ss_pred CCC
Q 029446 131 KGA 133 (193)
Q Consensus 131 ~~~ 133 (193)
...
T Consensus 245 ~a~ 247 (437)
T PRK00771 245 TAK 247 (437)
T ss_pred CCc
Confidence 654
No 401
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.10 E-value=4.3e-05 Score=59.50 Aligned_cols=118 Identities=16% Similarity=0.191 Sum_probs=65.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc---------cccc---------------cceeEEEEE-----------EcC
Q 029446 16 SEMRVVMLGLDAAGKTTILYKLHIGEVLS---------TVPT---------------IGFNVEKVQ-----------YKN 60 (193)
Q Consensus 16 ~~~~v~v~G~~~~GKssli~~l~~~~~~~---------~~~t---------------~~~~~~~~~-----------~~~ 60 (193)
..-.++++|++|+||||++.+|....... +..+ .++....+. ..+
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~ 215 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRN 215 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcC
Confidence 34578999999999999999986531100 0001 122222111 135
Q ss_pred EEEEEEecCCCCCCHHhHHhh---h---cCCCEEEEEEECCC-hhhHHHHHHHHHHHHcCCCCCCC-eEEEEEeCCCCCC
Q 029446 61 VIFTVWDVGGQEKLRPLWRHY---F---NNTDGLIYVVDSLD-RERIGKAKQEFQAIIKDPFMLNS-VILVFANKQDMKG 132 (193)
Q Consensus 61 ~~~~i~D~~g~~~~~~~~~~~---~---~~~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~~-p~ivv~nK~Dl~~ 132 (193)
..+.++||+|........... + ..+.-.++|++++. .+.+.++...+..........-. +-=+|.||.|...
T Consensus 216 ~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt~ 295 (374)
T PRK14722 216 KHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEAS 295 (374)
T ss_pred CCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccCC
Confidence 689999999977554432221 1 23455689999875 44444444444443221110001 1237779999776
Q ss_pred C
Q 029446 133 A 133 (193)
Q Consensus 133 ~ 133 (193)
.
T Consensus 296 ~ 296 (374)
T PRK14722 296 N 296 (374)
T ss_pred C
Confidence 4
No 402
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.07 E-value=5.1e-05 Score=66.53 Aligned_cols=110 Identities=17% Similarity=0.191 Sum_probs=65.1
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCcc--ccc-----cccceeEEEEEEcCEEEEEEecCC----C----CCCHHhHHhh---
Q 029446 20 VVMLGLDAAGKTTILYKLHIGEVL--STV-----PTIGFNVEKVQYKNVIFTVWDVGG----Q----EKLRPLWRHY--- 81 (193)
Q Consensus 20 v~v~G~~~~GKssli~~l~~~~~~--~~~-----~t~~~~~~~~~~~~~~~~i~D~~g----~----~~~~~~~~~~--- 81 (193)
-+|+|++|+||||++.. .+-+|+ +.. ...+ +...--+-.-+-.++||.| + +.....|..+
T Consensus 128 y~viG~pgsGKTtal~~-sgl~Fpl~~~~~~~~~~~~g-T~~cdwwf~deaVlIDtaGry~~q~s~~~~~~~~W~~fL~l 205 (1188)
T COG3523 128 YMVIGPPGSGKTTALLN-SGLQFPLAEQMGALGLAGPG-TRNCDWWFTDEAVLIDTAGRYITQDSADEVDRAEWLGFLGL 205 (1188)
T ss_pred eEEecCCCCCcchHHhc-ccccCcchhhhccccccCCC-CcccCcccccceEEEcCCcceecccCcchhhHHHHHHHHHH
Confidence 58899999999998865 333333 111 1111 1111122345678999998 2 1233344433
Q ss_pred ------hcCCCEEEEEEECCCh-----h----hHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 029446 82 ------FNNTDGLIYVVDSLDR-----E----RIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKG 132 (193)
Q Consensus 82 ------~~~~d~~i~v~d~~~~-----~----s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 132 (193)
.+-.|++|+++|+.+. . -...+..-+.++... -....|+++++||.|+.+
T Consensus 206 Lkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~t-L~~~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 206 LKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRET-LHARLPVYLVLTKADLLP 270 (1188)
T ss_pred HHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHh-hccCCceEEEEecccccc
Confidence 1358999999999642 1 112233445555443 225789999999999886
No 403
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=98.06 E-value=0.00013 Score=50.90 Aligned_cols=67 Identities=18% Similarity=0.202 Sum_probs=39.4
Q ss_pred CEEEEEEecCCCCCCHHhH----Hhhh--cCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 029446 60 NVIFTVWDVGGQEKLRPLW----RHYF--NNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA 133 (193)
Q Consensus 60 ~~~~~i~D~~g~~~~~~~~----~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 133 (193)
...+.+.|++|........ ..+. ...+.+++|+|+..... .......+.+.. + ..-+|.||.|....
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~---~~~~~~~~~~~~---~-~~~viltk~D~~~~ 154 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQD---AVNQAKAFNEAL---G-ITGVILTKLDGDAR 154 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChH---HHHHHHHHHhhC---C-CCEEEEECCcCCCC
Confidence 4568999999975432211 1111 24899999999864432 223333332221 1 24577799997764
No 404
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.06 E-value=4.7e-05 Score=59.44 Aligned_cols=136 Identities=16% Similarity=0.123 Sum_probs=72.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCcc----------cc------------ccccceeEEEEEE--------------c
Q 029446 16 SEMRVVMLGLDAAGKTTILYKLHIGEVL----------ST------------VPTIGFNVEKVQY--------------K 59 (193)
Q Consensus 16 ~~~~v~v~G~~~~GKssli~~l~~~~~~----------~~------------~~t~~~~~~~~~~--------------~ 59 (193)
....|+++|+.|+||||++..|...-.. ++ ....++.+..... .
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~ 319 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 319 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhcc
Confidence 3468999999999999999998641110 00 0011222211100 1
Q ss_pred CEEEEEEecCCCCCCHHh----HHhhh--cCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 029446 60 NVIFTVWDVGGQEKLRPL----WRHYF--NNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA 133 (193)
Q Consensus 60 ~~~~~i~D~~g~~~~~~~----~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 133 (193)
+..+.++||+|....... ....+ ...+.+++|+|++-.. ..+...+..+... + .-=+++||.|....
T Consensus 320 ~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~--~d~~~i~~~F~~~----~-idglI~TKLDET~k 392 (436)
T PRK11889 320 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--KDMIEIITNFKDI----H-IDGIVFTKFDETAS 392 (436)
T ss_pred CCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccCh--HHHHHHHHHhcCC----C-CCEEEEEcccCCCC
Confidence 358999999997653221 12222 2367889999985321 1222233333111 1 12478999997765
Q ss_pred CCH-hHHHhhhCCCcCCCCceEEEEeccccCCCHHH
Q 029446 134 MTP-MEVCEGLGLFDLKNRKWHIQGTCALKGDGLYE 168 (193)
Q Consensus 134 ~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 168 (193)
.-. -.+....+. |+..++ +|++|.+
T Consensus 393 ~G~iLni~~~~~l--------PIsyit--~GQ~VPe 418 (436)
T PRK11889 393 SGELLKIPAVSSA--------PIVLMT--DGQDVKK 418 (436)
T ss_pred ccHHHHHHHHHCc--------CEEEEe--CCCCCCc
Confidence 322 234443433 444444 5666554
No 405
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=98.05 E-value=0.00016 Score=55.45 Aligned_cols=132 Identities=20% Similarity=0.159 Sum_probs=72.8
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCcc-----------cc----------------ccccceeEEEEEE-------------c
Q 029446 20 VVMLGLDAAGKTTILYKLHIGEVL-----------ST----------------VPTIGFNVEKVQY-------------K 59 (193)
Q Consensus 20 v~v~G~~~~GKssli~~l~~~~~~-----------~~----------------~~t~~~~~~~~~~-------------~ 59 (193)
.++-|--|||||||+|++...... +. .-+.|+-.-++.. .
T Consensus 4 tvitGFLGsGKTTlL~~lL~~~~g~kiAVIVNEfGEvgID~~~~l~~~~e~~~El~nGCICCT~r~dl~~~~~~L~~~~~ 83 (323)
T COG0523 4 TVITGFLGSGKTTLLNHLLANRDGKKIAVIVNEFGEVGIDGGALLSDTGEEVVELTNGCICCTVRDDLLPALERLLRRRD 83 (323)
T ss_pred EEEeecCCCCHHHHHHHHHhccCCCcEEEEEecCccccccCCCccccCCccEEEeCCceEEEeccchhHHHHHHHHhccC
Confidence 467899999999999999874321 00 0011111111111 1
Q ss_pred CEEEEEEecCCCCCCHHhHHhhhc--------CCCEEEEEEECCChhh-HHHHHHHHHHHHcCCCCCCCeEEEEEeCCCC
Q 029446 60 NVIFTVWDVGGQEKLRPLWRHYFN--------NTDGLIYVVDSLDRER-IGKAKQEFQAIIKDPFMLNSVILVFANKQDM 130 (193)
Q Consensus 60 ~~~~~i~D~~g~~~~~~~~~~~~~--------~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl 130 (193)
.....++++.|-..=......+.. ..|+++-|+|+.+-.. .+.+.....+-+... =++++||.|+
T Consensus 84 ~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~A------D~ivlNK~Dl 157 (323)
T COG0523 84 RPDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAFA------DVIVLNKTDL 157 (323)
T ss_pred CCCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHhC------cEEEEecccC
Confidence 356678888884333222222211 3688999999975432 222333333333332 2899999999
Q ss_pred CCCCCHhHHHhhhCCCcCCCCceEEEEecc
Q 029446 131 KGAMTPMEVCEGLGLFDLKNRKWHIQGTCA 160 (193)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (193)
.++...+.+...+.. -+...+++.++.
T Consensus 158 v~~~~l~~l~~~l~~---lnp~A~i~~~~~ 184 (323)
T COG0523 158 VDAEELEALEARLRK---LNPRARIIETSY 184 (323)
T ss_pred CCHHHHHHHHHHHHH---hCCCCeEEEccc
Confidence 997543333333321 134456887776
No 406
>PRK10867 signal recognition particle protein; Provisional
Probab=98.03 E-value=0.00015 Score=57.78 Aligned_cols=78 Identities=17% Similarity=0.145 Sum_probs=41.7
Q ss_pred CEEEEEEecCCCCCCHHhHH----hh--hcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 029446 60 NVIFTVWDVGGQEKLRPLWR----HY--FNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA 133 (193)
Q Consensus 60 ~~~~~i~D~~g~~~~~~~~~----~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 133 (193)
...+.++||+|......... .+ .-..+.+++|+|+...+ +.......+.... + ..-+|.||.|....
T Consensus 183 ~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq---~av~~a~~F~~~~---~-i~giIlTKlD~~~r 255 (433)
T PRK10867 183 GYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQ---DAVNTAKAFNEAL---G-LTGVILTKLDGDAR 255 (433)
T ss_pred CCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHH---HHHHHHHHHHhhC---C-CCEEEEeCccCccc
Confidence 46799999999654322111 11 12578889999986532 2223333332211 1 12467799996543
Q ss_pred CC-HhHHHhhhC
Q 029446 134 MT-PMEVCEGLG 144 (193)
Q Consensus 134 ~~-~~~~~~~~~ 144 (193)
.- ...+....+
T Consensus 256 gG~alsi~~~~~ 267 (433)
T PRK10867 256 GGAALSIRAVTG 267 (433)
T ss_pred ccHHHHHHHHHC
Confidence 22 233444444
No 407
>KOG2484 consensus GTPase [General function prediction only]
Probab=98.03 E-value=3.7e-06 Score=64.59 Aligned_cols=55 Identities=18% Similarity=0.315 Sum_probs=44.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccccccccceeEE--EEEEcCEEEEEEecCC
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVE--KVQYKNVIFTVWDVGG 70 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~--~~~~~~~~~~i~D~~g 70 (193)
.+.++++|+|-||+||||+||+|.....+..+++.|++-. .+. -+..+.+.|.||
T Consensus 250 k~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~smqeV~-Ldk~i~llDsPg 306 (435)
T KOG2484|consen 250 KTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRSMQEVK-LDKKIRLLDSPG 306 (435)
T ss_pred CcceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhhhhhee-ccCCceeccCCc
Confidence 4678999999999999999999999988877766666643 332 356789999999
No 408
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=98.00 E-value=5.7e-05 Score=57.89 Aligned_cols=66 Identities=18% Similarity=0.254 Sum_probs=38.2
Q ss_pred EEEEEEecCCCCCCHHhHHhhhc--------CCCEEEEEEECCChhhHH-HHHHHHHHHHcCCCCCCCeEEEEEeCCCCC
Q 029446 61 VIFTVWDVGGQEKLRPLWRHYFN--------NTDGLIYVVDSLDRERIG-KAKQEFQAIIKDPFMLNSVILVFANKQDMK 131 (193)
Q Consensus 61 ~~~~i~D~~g~~~~~~~~~~~~~--------~~d~~i~v~d~~~~~s~~-~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 131 (193)
....++++.|-..-..+...++. ..+.++.|+|+.+-.... .......++ ... =++++||+|+.
T Consensus 91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi-~~A------D~IvlnK~Dl~ 163 (318)
T PRK11537 91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQV-GYA------DRILLTKTDVA 163 (318)
T ss_pred CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHH-HhC------CEEEEeccccC
Confidence 45688899997665554443322 258899999996422111 111111222 211 27999999998
Q ss_pred CC
Q 029446 132 GA 133 (193)
Q Consensus 132 ~~ 133 (193)
++
T Consensus 164 ~~ 165 (318)
T PRK11537 164 GE 165 (318)
T ss_pred CH
Confidence 74
No 409
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.99 E-value=0.00011 Score=61.90 Aligned_cols=137 Identities=14% Similarity=0.141 Sum_probs=74.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCcccc------cc------------------ccceeEEEE-----------EEcCEEE
Q 029446 19 RVVMLGLDAAGKTTILYKLHIGEVLST------VP------------------TIGFNVEKV-----------QYKNVIF 63 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~~~~~~~------~~------------------t~~~~~~~~-----------~~~~~~~ 63 (193)
-++++|+.|+||||.+..+........ .. ..++.+... ......+
T Consensus 187 Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~D~ 266 (767)
T PRK14723 187 VLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDKHL 266 (767)
T ss_pred EEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCCCE
Confidence 679999999999999999875321100 00 001111110 1125589
Q ss_pred EEEecCCCCCCHHhHH----hh--hcCCCEEEEEEECCC-hhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH
Q 029446 64 TVWDVGGQEKLRPLWR----HY--FNNTDGLIYVVDSLD-RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP 136 (193)
Q Consensus 64 ~i~D~~g~~~~~~~~~----~~--~~~~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~ 136 (193)
.++||+|......... .. ....+-.++|+|++. .+.+.++...+...... + +-=+|+||.|.....-.
T Consensus 267 VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~~f~~~~~~----~-i~glIlTKLDEt~~~G~ 341 (767)
T PRK14723 267 VLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHAYRHGAGE----D-VDGCIITKLDEATHLGP 341 (767)
T ss_pred EEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHHHHhhcccC----C-CCEEEEeccCCCCCccH
Confidence 9999999554332211 11 124667899999973 33344443333322100 1 12377999997765322
Q ss_pred -hHHHhhhCCCcCCCCceEEEEeccccCCCH-HHHH
Q 029446 137 -MEVCEGLGLFDLKNRKWHIQGTCALKGDGL-YEGL 170 (193)
Q Consensus 137 -~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi-~~~~ 170 (193)
-.+....++ |+..++ +|++| +++.
T Consensus 342 iL~i~~~~~l--------PI~yit--~GQ~VPdDL~ 367 (767)
T PRK14723 342 ALDTVIRHRL--------PVHYVS--TGQKVPEHLE 367 (767)
T ss_pred HHHHHHHHCC--------CeEEEe--cCCCChhhcc
Confidence 233343333 555555 67777 4443
No 410
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=97.99 E-value=4.5e-06 Score=64.22 Aligned_cols=59 Identities=19% Similarity=0.176 Sum_probs=45.1
Q ss_pred hcCCCccEEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEEEE-EcCEEEEEEecCC
Q 029446 12 FFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQ-YKNVIFTVWDVGG 70 (193)
Q Consensus 12 ~~~~~~~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~-~~~~~~~i~D~~g 70 (193)
....+++-|.++|.||+||||+||.|..+..+..-|-.|.+-...- --..++.++|+||
T Consensus 302 h~dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGETKVWQYItLmkrIfLIDcPG 361 (572)
T KOG2423|consen 302 HSDKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGETKVWQYITLMKRIFLIDCPG 361 (572)
T ss_pred ccCccceeeeeecCCCCchHHHHHHHhhcccccccCCCCcchHHHHHHHHhceeEecCCC
Confidence 4567889999999999999999999999988866555554432111 1245789999999
No 411
>KOG2484 consensus GTPase [General function prediction only]
Probab=97.98 E-value=1.4e-05 Score=61.52 Aligned_cols=76 Identities=14% Similarity=0.084 Sum_probs=51.3
Q ss_pred EecCCCCCCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhC
Q 029446 66 WDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLG 144 (193)
Q Consensus 66 ~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~ 144 (193)
|+-.....|.......+..+|++|.|+|+.+|.+-.. ..++..+.... .++..|+|+||+|+++.+..+++...+.
T Consensus 128 ~~~~s~kaY~ke~rkvve~sDVVleVlDARDPlgtR~--~~vE~~V~~~~-gnKkLILVLNK~DLVPrEv~e~Wl~YLr 203 (435)
T KOG2484|consen 128 DNEESKKAYDKEFRKVVEASDVVLEVLDARDPLGTRC--PEVEEAVLQAH-GNKKLILVLNKIDLVPREVVEKWLVYLR 203 (435)
T ss_pred cchhhHHHHHHHHHHHHhhhheEEEeeeccCCCCCCC--hhHHHHHHhcc-CCceEEEEeehhccCCHHHHHHHHHHHH
Confidence 3333344566666777788999999999988754322 22333332211 3477999999999999877777776664
No 412
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=97.98 E-value=2.8e-05 Score=54.61 Aligned_cols=110 Identities=20% Similarity=0.214 Sum_probs=63.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhc----C--------Ccccc------ccccceeEEEEEE---------------------c
Q 029446 19 RVVMLGLDAAGKTTILYKLHI----G--------EVLST------VPTIGFNVEKVQY---------------------K 59 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~----~--------~~~~~------~~t~~~~~~~~~~---------------------~ 59 (193)
-+++.|..|||||||++++.. + ++.+. ....+.....+.. .
T Consensus 2 v~ii~GfLGsGKTTli~~ll~~~~~~~~~~vI~ne~g~~~iD~~~l~~~~~~v~~l~~gcicc~~~~~~~~~l~~l~~~~ 81 (178)
T PF02492_consen 2 VIIITGFLGSGKTTLINHLLKRNRQGERVAVIVNEFGEVNIDAELLQEDGVPVVELNNGCICCTLRDDLVEALRRLLREY 81 (178)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTTS-EEEEECSTTSTHHHHHHHHTTT-EEEEECTTTESS-TTS-HHHHHHHHCCCC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhcCCceeEEEEccccccccchhhhcccceEEEEecCCCcccccHHHHHHHHHHHHHhc
Confidence 367899999999999999993 1 11100 0011222222211 1
Q ss_pred --CEEEEEEecCCCCCCHHhH---Hh--hhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 029446 60 --NVIFTVWDVGGQEKLRPLW---RH--YFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKG 132 (193)
Q Consensus 60 --~~~~~i~D~~g~~~~~~~~---~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 132 (193)
.....+.++.|...-.... .. ..-..+.++.|+|+.+-.........+...+.... ++++||+|+.+
T Consensus 82 ~~~~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~AD------vIvlnK~D~~~ 155 (178)
T PF02492_consen 82 EERPDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAFAD------VIVLNKIDLVS 155 (178)
T ss_dssp HGC-SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT-S------EEEEE-GGGHH
T ss_pred CCCcCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcchhcC------EEEEeccccCC
Confidence 3567888998855444331 00 01247999999999664333444445555554432 89999999987
Q ss_pred CC
Q 029446 133 AM 134 (193)
Q Consensus 133 ~~ 134 (193)
..
T Consensus 156 ~~ 157 (178)
T PF02492_consen 156 DE 157 (178)
T ss_dssp HH
T ss_pred hh
Confidence 64
No 413
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.97 E-value=3.3e-05 Score=43.00 Aligned_cols=45 Identities=22% Similarity=0.369 Sum_probs=29.3
Q ss_pred cCCCEEEEEEECCChh--hHHHHHHHHHHHHcCCCCCCCeEEEEEeCCC
Q 029446 83 NNTDGLIYVVDSLDRE--RIGKAKQEFQAIIKDPFMLNSVILVFANKQD 129 (193)
Q Consensus 83 ~~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 129 (193)
+-.++++|++|++..+ +++.....+.++... ..++|+++|.||+|
T Consensus 12 hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~--F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 12 HLADAILFIIDPSEQCGYSIEEQLSLFKEIKPL--FPNKPVIVVLNKID 58 (58)
T ss_dssp GT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHH--TTTS-EEEEE--TT
T ss_pred hhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHH--cCCCCEEEEEeccC
Confidence 3478999999998654 566666777777654 35899999999998
No 414
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.95 E-value=0.00012 Score=58.10 Aligned_cols=78 Identities=17% Similarity=0.159 Sum_probs=42.8
Q ss_pred CEEEEEEecCCCCCCHHhHHhh------hcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 029446 60 NVIFTVWDVGGQEKLRPLWRHY------FNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA 133 (193)
Q Consensus 60 ~~~~~i~D~~g~~~~~~~~~~~------~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 133 (193)
...+.++||||........... .-..+.+++|+|+...+ ........+.... + ..=+|.||.|....
T Consensus 182 ~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq---~~~~~a~~f~~~v---~-i~giIlTKlD~~~~ 254 (428)
T TIGR00959 182 GFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQ---DAVNTAKTFNERL---G-LTGVVLTKLDGDAR 254 (428)
T ss_pred CCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchH---HHHHHHHHHHhhC---C-CCEEEEeCccCccc
Confidence 4679999999965443221111 12578899999987543 2333333332211 1 12477999996543
Q ss_pred C-CHhHHHhhhC
Q 029446 134 M-TPMEVCEGLG 144 (193)
Q Consensus 134 ~-~~~~~~~~~~ 144 (193)
. ....+....+
T Consensus 255 ~G~~lsi~~~~~ 266 (428)
T TIGR00959 255 GGAALSVRSVTG 266 (428)
T ss_pred ccHHHHHHHHHC
Confidence 2 2334444444
No 415
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.95 E-value=0.00011 Score=45.65 Aligned_cols=97 Identities=19% Similarity=0.092 Sum_probs=57.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCccccccccceeEEEEEEcCEEEEEEecCCCCCCHHh-HHhhhcCCCEEEEEEECCChh
Q 029446 20 VVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPL-WRHYFNNTDGLIYVVDSLDRE 98 (193)
Q Consensus 20 v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-~~~~~~~~d~~i~v~d~~~~~ 98 (193)
+++.|..|+||||+...+...-.. .+.....++ .+.++|+++....... .......+|.++++++....
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~-----~g~~v~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~~~~- 71 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAK-----RGKRVLLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTPEAL- 71 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-----CCCeEEEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecCCchh-
Confidence 578899999999998887754322 122222222 8999999986654432 14445679999999988633
Q ss_pred hHHHHHHHHHHHHcCCCCCCCeEEEEEe
Q 029446 99 RIGKAKQEFQAIIKDPFMLNSVILVFAN 126 (193)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~p~ivv~n 126 (193)
+....................+..++.|
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~vv~N 99 (99)
T cd01983 72 AVLGARRLTEVVLELAIEGLRPVGVVVN 99 (99)
T ss_pred hHHHHHHHHHHHHHhhccCCceEEEEeC
Confidence 3444433322222222223445555544
No 416
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.90 E-value=3.6e-05 Score=57.69 Aligned_cols=22 Identities=32% Similarity=0.459 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 029446 19 RVVMLGLDAAGKTTILYKLHIG 40 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~~ 40 (193)
..+++|++|+|||||+|+|...
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~ 187 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPE 187 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCch
Confidence 6788999999999999999874
No 417
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.90 E-value=0.00026 Score=56.42 Aligned_cols=135 Identities=19% Similarity=0.224 Sum_probs=70.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCc-------ccc--ccc---------------cceeEEEE-----------EEcCEEE
Q 029446 19 RVVMLGLDAAGKTTILYKLHIGEV-------LST--VPT---------------IGFNVEKV-----------QYKNVIF 63 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~~~~-------~~~--~~t---------------~~~~~~~~-----------~~~~~~~ 63 (193)
.++++|+.|+||||++..|..... ... ..+ .++.+... ......+
T Consensus 223 ~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~~~Dl 302 (424)
T PRK05703 223 VVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLRDCDV 302 (424)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhCCCCE
Confidence 789999999999998777643211 000 000 11111110 0125689
Q ss_pred EEEecCCCCCCHH----hHHhhhc---CCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC-
Q 029446 64 TVWDVGGQEKLRP----LWRHYFN---NTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT- 135 (193)
Q Consensus 64 ~i~D~~g~~~~~~----~~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~- 135 (193)
.++||+|...... ....++. ...-+++|++++-.. ..+.+.+..+.. .+ +-=++.||.|......
T Consensus 303 VlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~--~~l~~~~~~f~~----~~-~~~vI~TKlDet~~~G~ 375 (424)
T PRK05703 303 ILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKY--EDLKDIYKHFSR----LP-LDGLIFTKLDETSSLGS 375 (424)
T ss_pred EEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCH--HHHHHHHHHhCC----CC-CCEEEEecccccccccH
Confidence 9999999765531 2233333 345678889986331 222233333211 11 1248899999765422
Q ss_pred HhHHHhhhCCCcCCCCceEEEEeccccCCCH-HHHH
Q 029446 136 PMEVCEGLGLFDLKNRKWHIQGTCALKGDGL-YEGL 170 (193)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi-~~~~ 170 (193)
...+....+. |+..++ +|++| +++.
T Consensus 376 i~~~~~~~~l--------Pv~yit--~Gq~VpdDl~ 401 (424)
T PRK05703 376 ILSLLIESGL--------PISYLT--NGQRVPDDIK 401 (424)
T ss_pred HHHHHHHHCC--------CEEEEe--CCCCChhhhh
Confidence 1223333332 555555 67776 4443
No 418
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.88 E-value=0.00019 Score=55.88 Aligned_cols=136 Identities=16% Similarity=0.119 Sum_probs=71.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCcc----------cc------------ccccceeEEEEEE--------------c
Q 029446 16 SEMRVVMLGLDAAGKTTILYKLHIGEVL----------ST------------VPTIGFNVEKVQY--------------K 59 (193)
Q Consensus 16 ~~~~v~v~G~~~~GKssli~~l~~~~~~----------~~------------~~t~~~~~~~~~~--------------~ 59 (193)
..-.++++|+.|+||||++..+...... ++ ....++.+..... .
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~~ 284 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYVN 284 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhcC
Confidence 3457899999999999999888642100 00 0011221111100 2
Q ss_pred CEEEEEEecCCCCCCHHhH----Hhhhc--CCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 029446 60 NVIFTVWDVGGQEKLRPLW----RHYFN--NTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA 133 (193)
Q Consensus 60 ~~~~~i~D~~g~~~~~~~~----~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 133 (193)
...+.++||+|........ ..+.. ..+.+++|++++.. ...+...+..+. .-.+--++.||.|....
T Consensus 285 ~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~--~~d~~~i~~~f~-----~l~i~glI~TKLDET~~ 357 (407)
T PRK12726 285 CVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMK--SADVMTILPKLA-----EIPIDGFIITKMDETTR 357 (407)
T ss_pred CCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCccc--HHHHHHHHHhcC-----cCCCCEEEEEcccCCCC
Confidence 4689999999976543322 22222 34677788876422 222222222221 11123578999997754
Q ss_pred CC-HhHHHhhhCCCcCCCCceEEEEeccccCCCHHH
Q 029446 134 MT-PMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYE 168 (193)
Q Consensus 134 ~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 168 (193)
.- .-.+....+. |+..++ +|++|.+
T Consensus 358 ~G~~Lsv~~~tgl--------PIsylt--~GQ~Vpd 383 (407)
T PRK12726 358 IGDLYTVMQETNL--------PVLYMT--DGQNITE 383 (407)
T ss_pred ccHHHHHHHHHCC--------CEEEEe--cCCCCCc
Confidence 32 2233444433 555555 5666664
No 419
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.85 E-value=0.00019 Score=53.62 Aligned_cols=133 Identities=17% Similarity=0.116 Sum_probs=72.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCcc----------------------ccccccceeEEEEE--------------EcC
Q 029446 17 EMRVVMLGLDAAGKTTILYKLHIGEVL----------------------STVPTIGFNVEKVQ--------------YKN 60 (193)
Q Consensus 17 ~~~v~v~G~~~~GKssli~~l~~~~~~----------------------~~~~t~~~~~~~~~--------------~~~ 60 (193)
.-+++++|++|+||||++..+...... .+....++.+.... ...
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~ 154 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR 154 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcCC
Confidence 369999999999999998877542110 00111122221110 125
Q ss_pred EEEEEEecCCCCCCHHh----HHhhh--cCCCEEEEEEECCC-hhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 029446 61 VIFTVWDVGGQEKLRPL----WRHYF--NNTDGLIYVVDSLD-RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA 133 (193)
Q Consensus 61 ~~~~i~D~~g~~~~~~~----~~~~~--~~~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 133 (193)
..+.++||+|....... +..++ ...+-+++|+|++. ..... .....+.. -.+-=++.||.|....
T Consensus 155 ~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~~---~~~~~f~~-----~~~~~~I~TKlDet~~ 226 (270)
T PRK06731 155 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMI---EIITNFKD-----IHIDGIVFTKFDETAS 226 (270)
T ss_pred CCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHHH---HHHHHhCC-----CCCCEEEEEeecCCCC
Confidence 68999999997753222 11222 24677899999863 33222 23333211 1122488999997765
Q ss_pred CCH-hHHHhhhCCCcCCCCceEEEEeccccCCCHH
Q 029446 134 MTP-MEVCEGLGLFDLKNRKWHIQGTCALKGDGLY 167 (193)
Q Consensus 134 ~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 167 (193)
.-. -.+....+. |+..++ +|+++.
T Consensus 227 ~G~~l~~~~~~~~--------Pi~~it--~Gq~vp 251 (270)
T PRK06731 227 SGELLKIPAVSSA--------PIVLMT--DGQDVK 251 (270)
T ss_pred ccHHHHHHHHHCc--------CEEEEe--CCCCCC
Confidence 322 233333333 555454 566655
No 420
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.84 E-value=2.9e-05 Score=58.09 Aligned_cols=57 Identities=19% Similarity=0.257 Sum_probs=40.4
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCc-----cccccccceeEEE---EEE-cCEEEEEEecCC
Q 029446 14 GNSEMRVVMLGLDAAGKTTILYKLHIGEV-----LSTVPTIGFNVEK---VQY-KNVIFTVWDVGG 70 (193)
Q Consensus 14 ~~~~~~v~v~G~~~~GKssli~~l~~~~~-----~~~~~t~~~~~~~---~~~-~~~~~~i~D~~g 70 (193)
....+.+.|+|-||+|||||||++..... ...++..|++... +.+ ..-.+.+.||||
T Consensus 140 ~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp~vy~iDTPG 205 (335)
T KOG2485|consen 140 LNSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRPPVYLIDTPG 205 (335)
T ss_pred cCCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCCceEEecCCC
Confidence 34789999999999999999998876432 2344445555432 333 345589999999
No 421
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.83 E-value=0.00014 Score=58.81 Aligned_cols=111 Identities=17% Similarity=0.175 Sum_probs=61.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCC--------cc--ccc--------------cccceeEEEEE-----------EcC
Q 029446 16 SEMRVVMLGLDAAGKTTILYKLHIGE--------VL--STV--------------PTIGFNVEKVQ-----------YKN 60 (193)
Q Consensus 16 ~~~~v~v~G~~~~GKssli~~l~~~~--------~~--~~~--------------~t~~~~~~~~~-----------~~~ 60 (193)
..-.++++|+.|+||||++..|.... .. ... ...++.+.... ...
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~ 428 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRD 428 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhcc
Confidence 34588999999999999998886421 10 000 11122222211 135
Q ss_pred EEEEEEecCCCCCCHHhHHhh---h--cCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 029446 61 VIFTVWDVGGQEKLRPLWRHY---F--NNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA 133 (193)
Q Consensus 61 ~~~~i~D~~g~~~~~~~~~~~---~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 133 (193)
..+.++||+|........... + ......++|++.+. +...+...+..+.. ..+.-+|+||.|....
T Consensus 429 ~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAts--s~~Dl~eii~~f~~-----~~~~gvILTKlDEt~~ 499 (559)
T PRK12727 429 YKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANA--HFSDLDEVVRRFAH-----AKPQGVVLTKLDETGR 499 (559)
T ss_pred CCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCC--ChhHHHHHHHHHHh-----hCCeEEEEecCcCccc
Confidence 789999999965443221110 1 11345677888763 23333333333322 1345699999997554
No 422
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.82 E-value=0.00012 Score=55.58 Aligned_cols=141 Identities=16% Similarity=0.170 Sum_probs=80.5
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCC----cc------cc------------ccccceeEEE---------EE-----
Q 029446 14 GNSEMRVVMLGLDAAGKTTILYKLHIGE----VL------ST------------VPTIGFNVEK---------VQ----- 57 (193)
Q Consensus 14 ~~~~~~v~v~G~~~~GKssli~~l~~~~----~~------~~------------~~t~~~~~~~---------~~----- 57 (193)
..+++-++++|-.|+||||-|-+|...- .. ++ ....|+.+.. +-
T Consensus 136 ~~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~ 215 (340)
T COG0552 136 EKKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQ 215 (340)
T ss_pred CCCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHH
Confidence 3468999999999999999988875411 00 00 1112222221 11
Q ss_pred ---EcCEEEEEEecCCCCCCHHhHHh-------hhcC-----CCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEE
Q 029446 58 ---YKNVIFTVWDVGGQEKLRPLWRH-------YFNN-----TDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVIL 122 (193)
Q Consensus 58 ---~~~~~~~i~D~~g~~~~~~~~~~-------~~~~-----~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i 122 (193)
..++.+.+.||+|.-.-....-. ..+. .+-+++++|++-.+.--+....+.+.... -=
T Consensus 216 ~Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~F~eav~l-------~G 288 (340)
T COG0552 216 AAKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKIFNEAVGL-------DG 288 (340)
T ss_pred HHHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHHHHHHhcCC-------ce
Confidence 13789999999995554332211 1222 33488888998655433333444454332 13
Q ss_pred EEEeCCCCCCCC-CHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHH
Q 029446 123 VFANKQDMKGAM-TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLD 171 (193)
Q Consensus 123 vv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~ 171 (193)
+++||.|....- ..-.+...++. |+..+. -|++++++..
T Consensus 289 iIlTKlDgtAKGG~il~I~~~l~~--------PI~fiG--vGE~~~DL~~ 328 (340)
T COG0552 289 IILTKLDGTAKGGIILSIAYELGI--------PIKFIG--VGEGYDDLRP 328 (340)
T ss_pred EEEEecccCCCcceeeeHHHHhCC--------CEEEEe--CCCChhhccc
Confidence 788999955432 12345555554 555555 5777777643
No 423
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=97.82 E-value=0.00013 Score=56.41 Aligned_cols=23 Identities=30% Similarity=0.382 Sum_probs=19.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q 029446 18 MRVVMLGLDAAGKTTILYKLHIG 40 (193)
Q Consensus 18 ~~v~v~G~~~~GKssli~~l~~~ 40 (193)
.-.+|.|.-|||||||+|++...
T Consensus 5 pv~iltGFLGaGKTTll~~ll~~ 27 (341)
T TIGR02475 5 PVTIVTGFLGAGKTTLIRHLLQN 27 (341)
T ss_pred CEEEEEECCCCCHHHHHHHHHhc
Confidence 34688999999999999999863
No 424
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.80 E-value=0.00014 Score=56.68 Aligned_cols=109 Identities=17% Similarity=0.179 Sum_probs=61.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCcc-cccccc-----------------------ceeEEEE-----------EEcCE
Q 029446 17 EMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTI-----------------------GFNVEKV-----------QYKNV 61 (193)
Q Consensus 17 ~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~-----------------------~~~~~~~-----------~~~~~ 61 (193)
.=.|++||+.|+||||-+.+|...-.- .....+ ++....+ .....
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~ 282 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC 282 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence 457899999999999998877543220 000111 1111111 11356
Q ss_pred EEEEEecCCCCCCHHhHH----hhhcC--CCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeE-EEEEeCCCCCCC
Q 029446 62 IFTVWDVGGQEKLRPLWR----HYFNN--TDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVI-LVFANKQDMKGA 133 (193)
Q Consensus 62 ~~~i~D~~g~~~~~~~~~----~~~~~--~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~-ivv~nK~Dl~~~ 133 (193)
.+.++||.|...+..... .++.. ..-+.+|++++... ..+...+..+. ..|+ =++.||.|....
T Consensus 283 d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~--~dlkei~~~f~------~~~i~~~I~TKlDET~s 353 (407)
T COG1419 283 DVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKY--EDLKEIIKQFS------LFPIDGLIFTKLDETTS 353 (407)
T ss_pred CEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcch--HHHHHHHHHhc------cCCcceeEEEcccccCc
Confidence 899999999887755433 33232 34566788886332 22323333332 2222 377899997765
No 425
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.80 E-value=0.00014 Score=58.54 Aligned_cols=136 Identities=15% Similarity=0.150 Sum_probs=70.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcccc---------ccc---------------cceeEEE-----------EEEcCEE
Q 029446 18 MRVVMLGLDAAGKTTILYKLHIGEVLST---------VPT---------------IGFNVEK-----------VQYKNVI 62 (193)
Q Consensus 18 ~~v~v~G~~~~GKssli~~l~~~~~~~~---------~~t---------------~~~~~~~-----------~~~~~~~ 62 (193)
--++++|+.|+||||.+..|........ ..+ .++.... ....+..
T Consensus 257 ~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL~~L~d~d 336 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLALSELRNKH 336 (484)
T ss_pred cEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHHHhccCCC
Confidence 4689999999999999999875321100 000 0111110 1112457
Q ss_pred EEEEecCCCCCCHHh---HHhhhcC---CCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC-
Q 029446 63 FTVWDVGGQEKLRPL---WRHYFNN---TDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT- 135 (193)
Q Consensus 63 ~~i~D~~g~~~~~~~---~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~- 135 (193)
+.++||+|....... ....+.. ..-.++|+|++-.. ..+.+....+.. .+ .--+++||.|......
T Consensus 337 ~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~--~~l~~i~~~f~~----~~-~~g~IlTKlDet~~~G~ 409 (484)
T PRK06995 337 IVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHG--DTLNEVVQAYRG----PG-LAGCILTKLDEAASLGG 409 (484)
T ss_pred eEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcH--HHHHHHHHHhcc----CC-CCEEEEeCCCCcccchH
Confidence 899999996543321 1111222 23478899996322 223222222211 11 2346789999765422
Q ss_pred HhHHHhhhCCCcCCCCceEEEEeccccCCCH-HHHH
Q 029446 136 PMEVCEGLGLFDLKNRKWHIQGTCALKGDGL-YEGL 170 (193)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi-~~~~ 170 (193)
.-.+....++ |+..++ +|++| +++.
T Consensus 410 ~l~i~~~~~l--------PI~yvt--~GQ~VPeDL~ 435 (484)
T PRK06995 410 ALDVVIRYKL--------PLHYVS--NGQRVPEDLH 435 (484)
T ss_pred HHHHHHHHCC--------CeEEEe--cCCCChhhhc
Confidence 2233343333 555555 67777 4443
No 426
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.76 E-value=0.00028 Score=53.09 Aligned_cols=115 Identities=10% Similarity=0.083 Sum_probs=69.9
Q ss_pred HHHHhhhhcCCCccEEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEEEEEcCEEEEEEecCCCCC-----------
Q 029446 5 FRKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEK----------- 73 (193)
Q Consensus 5 ~~~~~~~~~~~~~~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~----------- 73 (193)
+..++......+-..++++|++|-|||+++++|.........+. .....+.+..+|....
T Consensus 49 L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~---------~~~~PVv~vq~P~~p~~~~~Y~~IL~~ 119 (302)
T PF05621_consen 49 LEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDED---------AERIPVVYVQMPPEPDERRFYSAILEA 119 (302)
T ss_pred HHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCC---------CccccEEEEecCCCCChHHHHHHHHHH
Confidence 45566666666778999999999999999999997654322111 1123566666665111
Q ss_pred -------------CHHhHHhhhcCCCEEEEEEECCC---hhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCC
Q 029446 74 -------------LRPLWRHYFNNTDGLIYVVDSLD---RERIGKAKQEFQAIIKDPFMLNSVILVFANKQ 128 (193)
Q Consensus 74 -------------~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~ 128 (193)
........++...+=++++|=-+ ..+.......+.-+..-...-++|+|.||++-
T Consensus 120 lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~ 190 (302)
T PF05621_consen 120 LGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTRE 190 (302)
T ss_pred hCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHH
Confidence 12233456677888888988632 12233333333333332233678999998764
No 427
>PRK13695 putative NTPase; Provisional
Probab=97.74 E-value=0.00026 Score=49.46 Aligned_cols=22 Identities=32% Similarity=0.517 Sum_probs=19.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 029446 18 MRVVMLGLDAAGKTTILYKLHI 39 (193)
Q Consensus 18 ~~v~v~G~~~~GKssli~~l~~ 39 (193)
+++++.|.+|+|||||++.+.+
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~ 22 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAE 22 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999998654
No 428
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.71 E-value=0.00038 Score=44.19 Aligned_cols=81 Identities=15% Similarity=0.114 Sum_probs=49.7
Q ss_pred EEEEc-CCCCCHHHHHHHHhcCCccccccccceeEEEEEE-cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCCh
Q 029446 20 VVMLG-LDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQY-KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDR 97 (193)
Q Consensus 20 v~v~G-~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~ 97 (193)
|.+.| ..|+||||+...+...-... +....-++. ....+.++|+|+..... ....+..+|.++++++.+ .
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~~-----~~~vl~~d~d~~~d~viiD~p~~~~~~--~~~~l~~ad~viv~~~~~-~ 73 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALARR-----GKRVLLIDLDPQYDYIIIDTPPSLGLL--TRNALAAADLVLIPVQPS-P 73 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHhC-----CCcEEEEeCCCCCCEEEEeCcCCCCHH--HHHHHHHCCEEEEeccCC-H
Confidence 45666 56899999876665322211 111111111 11678999999975433 336678899999999886 4
Q ss_pred hhHHHHHHHHH
Q 029446 98 ERIGKAKQEFQ 108 (193)
Q Consensus 98 ~s~~~~~~~~~ 108 (193)
.++......+.
T Consensus 74 ~s~~~~~~~~~ 84 (104)
T cd02042 74 LDLDGLEKLLE 84 (104)
T ss_pred HHHHHHHHHHH
Confidence 45666555544
No 429
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.66 E-value=0.0011 Score=44.58 Aligned_cols=105 Identities=16% Similarity=0.134 Sum_probs=60.0
Q ss_pred EEcCCCCCHHHHHHHHhcCCccccccccceeEEE-EEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCChhhH
Q 029446 22 MLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEK-VQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERI 100 (193)
Q Consensus 22 v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~-~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 100 (193)
.-|.+|+|||++.-.+...-...-..+.-++... ...-...+.++|+|+... ......+..+|.++++.+.+ ..++
T Consensus 5 ~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~~~~~~~yd~VIiD~p~~~~--~~~~~~l~~aD~vviv~~~~-~~s~ 81 (139)
T cd02038 5 TSGKGGVGKTNISANLALALAKLGKRVLLLDADLGLANLDYDYIIIDTGAGIS--DNVLDFFLAADEVIVVTTPE-PTSI 81 (139)
T ss_pred EcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCCCCCCCCCCEEEEECCCCCC--HHHHHHHHhCCeEEEEcCCC-hhHH
Confidence 4578899999986555422111000000000000 000116789999998543 33456778999999999987 4445
Q ss_pred HHHHHHHHHHHcCCCCCCCeEEEEEeCCCCC
Q 029446 101 GKAKQEFQAIIKDPFMLNSVILVFANKQDMK 131 (193)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 131 (193)
......+..+.... ...++.+|.|+.+-.
T Consensus 82 ~~~~~~l~~l~~~~--~~~~~~lVvN~~~~~ 110 (139)
T cd02038 82 TDAYALIKKLAKQL--RVLNFRVVVNRAESP 110 (139)
T ss_pred HHHHHHHHHHHHhc--CCCCEEEEEeCCCCH
Confidence 55444444443321 345678999999743
No 430
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.65 E-value=0.0015 Score=43.53 Aligned_cols=37 Identities=16% Similarity=0.148 Sum_probs=26.6
Q ss_pred HHHhhhhcCCCccEEEEEcCCCCCHHHHHHHHhcCCc
Q 029446 6 RKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEV 42 (193)
Q Consensus 6 ~~~~~~~~~~~~~~v~v~G~~~~GKssli~~l~~~~~ 42 (193)
..+.........-.+++.|++|+|||++++.+...-.
T Consensus 8 ~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~ 44 (151)
T cd00009 8 EALREALELPPPKNLLLYGPPGTGKTTLARAIANELF 44 (151)
T ss_pred HHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhh
Confidence 3343333333456799999999999999999986543
No 431
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.65 E-value=6.9e-05 Score=49.61 Aligned_cols=25 Identities=28% Similarity=0.301 Sum_probs=19.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCc
Q 029446 18 MRVVMLGLDAAGKTTILYKLHIGEV 42 (193)
Q Consensus 18 ~~v~v~G~~~~GKssli~~l~~~~~ 42 (193)
--++|.|++|+|||++++++.....
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~~ 29 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQLN 29 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHHH
T ss_pred cccEEEcCCCCCHHHHHHHHHHHhH
Confidence 3478999999999999999987543
No 432
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.62 E-value=0.00045 Score=54.20 Aligned_cols=112 Identities=20% Similarity=0.165 Sum_probs=66.6
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCC----c------ccc------------ccccceeEEEEE--------------
Q 029446 14 GNSEMRVVMLGLDAAGKTTILYKLHIGE----V------LST------------VPTIGFNVEKVQ-------------- 57 (193)
Q Consensus 14 ~~~~~~v~v~G~~~~GKssli~~l~~~~----~------~~~------------~~t~~~~~~~~~-------------- 57 (193)
...+..|+++|-.|+||||.+-.|...- . .++ ...+++.+....
T Consensus 97 ~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~ 176 (451)
T COG0541 97 KKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALE 176 (451)
T ss_pred CCCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHH
Confidence 3456789999999999999977765411 0 000 011122222110
Q ss_pred ---EcCEEEEEEecCCCCCCHHhHH------hhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCC
Q 029446 58 ---YKNVIFTVWDVGGQEKLRPLWR------HYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQ 128 (193)
Q Consensus 58 ---~~~~~~~i~D~~g~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~ 128 (193)
.....+.|+||+|.-......- ...-+.|=+++|+|+.-.+.-.+....+.+.+... =+|+||.
T Consensus 177 ~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~e~l~it-------GvIlTKl 249 (451)
T COG0541 177 KAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFNEALGIT-------GVILTKL 249 (451)
T ss_pred HHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHHHhhhcCCc-------eEEEEcc
Confidence 1256899999999665443321 11236899999999987665555545444443321 2677888
Q ss_pred CCCC
Q 029446 129 DMKG 132 (193)
Q Consensus 129 Dl~~ 132 (193)
|...
T Consensus 250 DGda 253 (451)
T COG0541 250 DGDA 253 (451)
T ss_pred cCCC
Confidence 8654
No 433
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.59 E-value=0.00027 Score=54.60 Aligned_cols=111 Identities=20% Similarity=0.214 Sum_probs=64.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCC----cc------cc------------cccccee-EEE---------------
Q 029446 14 GNSEMRVVMLGLDAAGKTTILYKLHIGE----VL------ST------------VPTIGFN-VEK--------------- 55 (193)
Q Consensus 14 ~~~~~~v~v~G~~~~GKssli~~l~~~~----~~------~~------------~~t~~~~-~~~--------------- 55 (193)
+.++--|.++|..|+||||.+-+|.... .. ++ ....++- |..
T Consensus 98 K~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~ 177 (483)
T KOG0780|consen 98 KGKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVD 177 (483)
T ss_pred cCCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHH
Confidence 3455678999999999999987775310 00 00 0011111 111
Q ss_pred -EEEcCEEEEEEecCCCCCCHH-hHHh-----hhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCC
Q 029446 56 -VQYKNVIFTVWDVGGQEKLRP-LWRH-----YFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQ 128 (193)
Q Consensus 56 -~~~~~~~~~i~D~~g~~~~~~-~~~~-----~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~ 128 (193)
..-+...+.|.||.|.-.... +... -.-+.|-+|+|.|++-.+.-......+.+.... --+++||.
T Consensus 178 ~fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aFk~~vdv-------g~vIlTKl 250 (483)
T KOG0780|consen 178 RFKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAFKETVDV-------GAVILTKL 250 (483)
T ss_pred HHHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHHHHhhcc-------ceEEEEec
Confidence 112478999999999543322 1111 112589999999998776666655555555432 12556666
Q ss_pred CCC
Q 029446 129 DMK 131 (193)
Q Consensus 129 Dl~ 131 (193)
|..
T Consensus 251 DGh 253 (483)
T KOG0780|consen 251 DGH 253 (483)
T ss_pred ccC
Confidence 654
No 434
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.56 E-value=0.0054 Score=48.34 Aligned_cols=133 Identities=17% Similarity=0.175 Sum_probs=72.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCc---------c-----cc------------ccccceeEEEEE-----------Ec
Q 029446 17 EMRVVMLGLDAAGKTTILYKLHIGEV---------L-----ST------------VPTIGFNVEKVQ-----------YK 59 (193)
Q Consensus 17 ~~~v~v~G~~~~GKssli~~l~~~~~---------~-----~~------------~~t~~~~~~~~~-----------~~ 59 (193)
.-.|+++|+.|+||||.+..+...-. . ++ ....++.+.... ..
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~~ 253 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQSK 253 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHhC
Confidence 45789999999999999888763210 0 00 001122221111 13
Q ss_pred CEEEEEEecCCCCCCHH----hHHhhhcC--CC-EEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 029446 60 NVIFTVWDVGGQEKLRP----LWRHYFNN--TD-GLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKG 132 (193)
Q Consensus 60 ~~~~~i~D~~g~~~~~~----~~~~~~~~--~d-~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 132 (193)
+..+.++||+|...... .....+.. .+ -.++|+|++... ..+...+...... .+-=+++||.|...
T Consensus 254 ~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~--~~~~~~~~~~~~~-----~~~~~I~TKlDet~ 326 (388)
T PRK12723 254 DFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKT--SDVKEIFHQFSPF-----SYKTVIFTKLDETT 326 (388)
T ss_pred CCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCH--HHHHHHHHHhcCC-----CCCEEEEEeccCCC
Confidence 67899999999665332 12223332 23 588999997542 2333333333211 12248899999776
Q ss_pred CCCH-hHHHhhhCCCcCCCCceEEEEeccccCCCH
Q 029446 133 AMTP-MEVCEGLGLFDLKNRKWHIQGTCALKGDGL 166 (193)
Q Consensus 133 ~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 166 (193)
..-. -.+....+. |+..++ +|++|
T Consensus 327 ~~G~~l~~~~~~~~--------Pi~yit--~Gq~v 351 (388)
T PRK12723 327 CVGNLISLIYEMRK--------EVSYVT--DGQIV 351 (388)
T ss_pred cchHHHHHHHHHCC--------CEEEEe--CCCCC
Confidence 5322 233333333 444444 67777
No 435
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=97.56 E-value=0.00043 Score=53.69 Aligned_cols=112 Identities=17% Similarity=0.162 Sum_probs=67.6
Q ss_pred HHhHHhhhc---CCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCC
Q 029446 75 RPLWRHYFN---NTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNR 151 (193)
Q Consensus 75 ~~~~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 151 (193)
..+|...++ ..|++|-|+|+.+|-. .-..-+...++. ..+.+-+|+|+||+||++.--...+...+... +
T Consensus 201 kRIW~ELyKViDSSDVvvqVlDARDPmG--Trc~~ve~ylkk-e~phKHli~vLNKvDLVPtwvt~~Wv~~lSke----y 273 (572)
T KOG2423|consen 201 KRIWGELYKVIDSSDVVVQVLDARDPMG--TRCKHVEEYLKK-EKPHKHLIYVLNKVDLVPTWVTAKWVRHLSKE----Y 273 (572)
T ss_pred hHHHHHHHHhhcccceeEEeeeccCCcc--cccHHHHHHHhh-cCCcceeEEEeeccccccHHHHHHHHHHHhhh----C
Confidence 344544444 5899999999987633 222333444432 23567799999999999864445555555321 1
Q ss_pred ceEEEEeccccCCCHHHHHHHHHHHHHhhh--------ccCCCCCCcCCC
Q 029446 152 KWHIQGTCALKGDGLYEGLDWLASTLKEMR--------AAGYSSVGTSSF 193 (193)
Q Consensus 152 ~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~--------~~~~~~~~~~~~ 193 (193)
----|..|.....|=-.+++.+.+...-.. .-|+|++|+||+
T Consensus 274 PTiAfHAsi~nsfGKgalI~llRQf~kLh~dkkqISVGfiGYPNvGKSSi 323 (572)
T KOG2423|consen 274 PTIAFHASINNSFGKGALIQLLRQFAKLHSDKKQISVGFIGYPNVGKSSI 323 (572)
T ss_pred cceeeehhhcCccchhHHHHHHHHHHhhccCccceeeeeecCCCCchHHH
Confidence 001344566666776677776665443221 129999999974
No 436
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=97.56 E-value=0.00033 Score=48.78 Aligned_cols=65 Identities=17% Similarity=0.121 Sum_probs=38.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEEEEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEE
Q 029446 16 SEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIY 90 (193)
Q Consensus 16 ~~~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 90 (193)
...-+.|+|.+|||||||++++...... .+.....+.+..-.+.+ |.+|.+.++. .-.+|+.+++
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~-----~g~~vg~Ik~~~~~~~~-d~~g~Ds~~~----r~aGA~~v~~ 69 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCA-----RGIRPGLIKHTHHDMDV-DKPGKDSYEL----RKAGAAQTLV 69 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhh-----cCCeEEEEEEcCCCccc-CCCCcHHHHH----HHhCCcEEEE
Confidence 3457899999999999999999855322 23344555443333333 6777443332 2245555553
No 437
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.53 E-value=8e-05 Score=48.66 Aligned_cols=22 Identities=23% Similarity=0.362 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 029446 19 RVVMLGLDAAGKTTILYKLHIG 40 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~~ 40 (193)
.|+|.|.+||||||+.+.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999864
No 438
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.53 E-value=0.00095 Score=42.69 Aligned_cols=100 Identities=15% Similarity=0.095 Sum_probs=56.0
Q ss_pred EcCCCCCHHHHHHHHhcCCccc-cccccceeEEEEEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCChhhHH
Q 029446 23 LGLDAAGKTTILYKLHIGEVLS-TVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIG 101 (193)
Q Consensus 23 ~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~ 101 (193)
-+..|+||||..-.+...-... ...+.-.+.... ....+.++|+|+..... ....+..+|.++++.+.+ ..++.
T Consensus 6 ~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~--~~~D~IIiDtpp~~~~~--~~~~l~~aD~vlvvv~~~-~~s~~ 80 (106)
T cd03111 6 GAKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQ--FGDDYVVVDLGRSLDEV--SLAALDQADRVFLVTQQD-LPSIR 80 (106)
T ss_pred CCCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCC--CCCCEEEEeCCCCcCHH--HHHHHHHcCeEEEEecCC-hHHHH
Confidence 3567899999876664322111 101111100000 11279999999865433 345678899999999887 44555
Q ss_pred HHHHHHHHHHcCCCCCCCeEEEEEeC
Q 029446 102 KAKQEFQAIIKDPFMLNSVILVFANK 127 (193)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~p~ivv~nK 127 (193)
.....+..+..........+.+|+|+
T Consensus 81 ~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 81 NAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred HHHHHHHHHHHcCCCCcCceEEEecC
Confidence 55555555443221113456677775
No 439
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.51 E-value=0.00046 Score=54.53 Aligned_cols=110 Identities=16% Similarity=0.178 Sum_probs=59.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCc------c-----cc------------ccccceeEEEE----------EEcCEEE
Q 029446 17 EMRVVMLGLDAAGKTTILYKLHIGEV------L-----ST------------VPTIGFNVEKV----------QYKNVIF 63 (193)
Q Consensus 17 ~~~v~v~G~~~~GKssli~~l~~~~~------~-----~~------------~~t~~~~~~~~----------~~~~~~~ 63 (193)
...++++|++|+||||++.+|..... . +. ....++..... ...+..+
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~ 302 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSEL 302 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCE
Confidence 34688999999999999988864210 0 00 01112222111 0135688
Q ss_pred EEEecCCCCCCHH-h---HHhhhc-----CCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 029446 64 TVWDVGGQEKLRP-L---WRHYFN-----NTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA 133 (193)
Q Consensus 64 ~i~D~~g~~~~~~-~---~~~~~~-----~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 133 (193)
.++||+|...... . +..+++ ...-.++|+|++... +.+....... .. -.+-=+|.||.|....
T Consensus 303 VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~--~~~~~~~~~f-~~----~~~~glIlTKLDEt~~ 374 (432)
T PRK12724 303 ILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSY--HHTLTVLKAY-ES----LNYRRILLTKLDEADF 374 (432)
T ss_pred EEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCH--HHHHHHHHHh-cC----CCCCEEEEEcccCCCC
Confidence 9999999753221 1 122222 244688999997543 2222222222 11 1112488999997654
No 440
>PF05729 NACHT: NACHT domain
Probab=97.48 E-value=0.0011 Score=45.54 Aligned_cols=24 Identities=29% Similarity=0.295 Sum_probs=20.1
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCcc
Q 029446 20 VVMLGLDAAGKTTILYKLHIGEVL 43 (193)
Q Consensus 20 v~v~G~~~~GKssli~~l~~~~~~ 43 (193)
+.|.|.+|+|||+++.++...-..
T Consensus 3 l~I~G~~G~GKStll~~~~~~~~~ 26 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLAQQLAE 26 (166)
T ss_pred EEEECCCCCChHHHHHHHHHHHHh
Confidence 689999999999999998864433
No 441
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.48 E-value=9.8e-05 Score=51.80 Aligned_cols=23 Identities=43% Similarity=0.629 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q 029446 18 MRVVMLGLDAAGKTTILYKLHIG 40 (193)
Q Consensus 18 ~~v~v~G~~~~GKssli~~l~~~ 40 (193)
++|+|+|+|||||||+.+.+...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999876
No 442
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=97.47 E-value=0.0011 Score=53.02 Aligned_cols=109 Identities=17% Similarity=0.196 Sum_probs=70.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC------------cccc---ccccceeEEEE--------------------EEcCEE
Q 029446 18 MRVVMLGLDAAGKTTILYKLHIGE------------VLST---VPTIGFNVEKV--------------------QYKNVI 62 (193)
Q Consensus 18 ~~v~v~G~~~~GKssli~~l~~~~------------~~~~---~~t~~~~~~~~--------------------~~~~~~ 62 (193)
=+..|+.+..-|||||..+|..+- +.++ ....++++... +.+..-
T Consensus 20 RNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~~FL 99 (842)
T KOG0469|consen 20 RNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGNGFL 99 (842)
T ss_pred ccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCccee
Confidence 356778999999999999997531 1111 11112222210 113678
Q ss_pred EEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCC
Q 029446 63 FTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMK 131 (193)
Q Consensus 63 ~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 131 (193)
+.++|.||+..|.+..-.+++-.|+++.|+|.-+.--.+. ...+.+.+.+ .+..+++.||.|..
T Consensus 100 iNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQT-ETVLrQA~~E----RIkPvlv~NK~DRA 163 (842)
T KOG0469|consen 100 INLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQT-ETVLRQAIAE----RIKPVLVMNKMDRA 163 (842)
T ss_pred EEeccCCCcccchhhhhheeEeccCcEEEEEccCceEech-HHHHHHHHHh----hccceEEeehhhHH
Confidence 9999999999999999999999999999999865321111 1222333322 23356899999953
No 443
>PRK08118 topology modulation protein; Reviewed
Probab=97.46 E-value=0.00011 Score=51.16 Aligned_cols=22 Identities=23% Similarity=0.525 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 029446 19 RVVMLGLDAAGKTTILYKLHIG 40 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~~ 40 (193)
+|+|+|++|||||||.+.+...
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999998864
No 444
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.45 E-value=0.003 Score=44.34 Aligned_cols=26 Identities=23% Similarity=0.213 Sum_probs=22.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCc
Q 029446 17 EMRVVMLGLDAAGKTTILYKLHIGEV 42 (193)
Q Consensus 17 ~~~v~v~G~~~~GKssli~~l~~~~~ 42 (193)
.=.++++|+.|+|||||++.+.+-..
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 50 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQLI 50 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcCCC
Confidence 34789999999999999999887543
No 445
>PRK07261 topology modulation protein; Provisional
Probab=97.44 E-value=0.00012 Score=51.06 Aligned_cols=23 Identities=30% Similarity=0.602 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q 029446 18 MRVVMLGLDAAGKTTILYKLHIG 40 (193)
Q Consensus 18 ~~v~v~G~~~~GKssli~~l~~~ 40 (193)
.+|+|+|.+|+|||||.+.+...
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 47999999999999999998743
No 446
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=97.43 E-value=0.00028 Score=48.56 Aligned_cols=51 Identities=27% Similarity=0.427 Sum_probs=33.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEEEEEcCEEEEEEecCCCCCCH
Q 029446 19 RVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLR 75 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~ 75 (193)
.+.++|.+|+|||||++++.... ...+.....+.+....+.+ |.+|...++
T Consensus 3 vi~i~G~~gsGKTTli~~L~~~l-----~~~g~~V~~iK~~~~~~~~-d~~g~Ds~~ 53 (159)
T cd03116 3 VIGFVGYSGSGKTTLLEKLIPAL-----SARGLRVAVIKHDHHDFDI-DTPGKDSYR 53 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH-----HHcCCcEEEEEecCCcccc-cCccchHHH
Confidence 57899999999999999998532 2334445555554444443 777754433
No 447
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.42 E-value=0.0012 Score=47.82 Aligned_cols=64 Identities=23% Similarity=0.231 Sum_probs=39.3
Q ss_pred EEEEEEecC-CCCCCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCC
Q 029446 61 VIFTVWDVG-GQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMK 131 (193)
Q Consensus 61 ~~~~i~D~~-g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 131 (193)
..+.+.||- |-+.| -+...+++|.++.|+|++. .++.... .+.++.+... -.++.+|+||.|..
T Consensus 134 ~e~VivDtEAGiEHf---gRg~~~~vD~vivVvDpS~-~sl~tae-ri~~L~~elg--~k~i~~V~NKv~e~ 198 (255)
T COG3640 134 YEVVIVDTEAGIEHF---GRGTIEGVDLVIVVVDPSY-KSLRTAE-RIKELAEELG--IKRIFVVLNKVDEE 198 (255)
T ss_pred CcEEEEecccchhhh---ccccccCCCEEEEEeCCcH-HHHHHHH-HHHHHHHHhC--CceEEEEEeeccch
Confidence 466677764 33222 2334578999999999983 3444443 2333333321 37899999999955
No 448
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.39 E-value=0.00015 Score=48.82 Aligned_cols=20 Identities=25% Similarity=0.497 Sum_probs=18.5
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 029446 20 VVMLGLDAAGKTTILYKLHI 39 (193)
Q Consensus 20 v~v~G~~~~GKssli~~l~~ 39 (193)
|+++|++|||||||++.+..
T Consensus 2 ii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999874
No 449
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.39 E-value=0.00019 Score=40.93 Aligned_cols=21 Identities=24% Similarity=0.476 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 029446 19 RVVMLGLDAAGKTTILYKLHI 39 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~ 39 (193)
..+|.|+.|+||||+++.+.-
T Consensus 25 ~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999988764
No 450
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=97.38 E-value=0.00071 Score=48.93 Aligned_cols=70 Identities=13% Similarity=0.156 Sum_probs=39.3
Q ss_pred CEEEEEEecCCCCCCHHh------HHhhhcCCCEEEEEEECC------ChhhHHHH-HHHHHHHHcCCCCCCCeEEEEEe
Q 029446 60 NVIFTVWDVGGQEKLRPL------WRHYFNNTDGLIYVVDSL------DRERIGKA-KQEFQAIIKDPFMLNSVILVFAN 126 (193)
Q Consensus 60 ~~~~~i~D~~g~~~~~~~------~~~~~~~~d~~i~v~d~~------~~~s~~~~-~~~~~~~~~~~~~~~~p~ivv~n 126 (193)
.....++|+|||-++... ....++..+.=+.++.+. +|..|-.. .-.+...+. -..|-|=|+.
T Consensus 96 ~~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~lL~sl~tMl~----melphVNvlS 171 (290)
T KOG1533|consen 96 TDHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFISSLLVSLATMLH----MELPHVNVLS 171 (290)
T ss_pred cCcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHHHHHHHHHHHHh----hcccchhhhh
Confidence 557899999997764221 122334455555555443 44443332 222333332 3567788899
Q ss_pred CCCCCCC
Q 029446 127 KQDMKGA 133 (193)
Q Consensus 127 K~Dl~~~ 133 (193)
|+|+...
T Consensus 172 K~Dl~~~ 178 (290)
T KOG1533|consen 172 KADLLKK 178 (290)
T ss_pred HhHHHHh
Confidence 9998753
No 451
>PRK06851 hypothetical protein; Provisional
Probab=97.31 E-value=0.00093 Score=52.04 Aligned_cols=68 Identities=15% Similarity=0.217 Sum_probs=44.1
Q ss_pred hhHHHHhhhhcCCCccEEEEEcCCCCCHHHHHHHHhcCCc----c-cc--ccccceeEEEEEEcCEEEEEEe-cCC
Q 029446 3 QAFRKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEV----L-ST--VPTIGFNVEKVQYKNVIFTVWD-VGG 70 (193)
Q Consensus 3 ~~~~~~~~~~~~~~~~~v~v~G~~~~GKssli~~l~~~~~----~-~~--~~t~~~~~~~~~~~~~~~~i~D-~~g 70 (193)
+.|..+|+.......--+++-|.||+|||||++.+..... . +. .+.......-+-.....+-++| |+.
T Consensus 16 ~Gf~s~~~~~~~~~~~~~il~G~pGtGKStl~~~i~~~~~~~g~~Ve~~~~~~d~~slDgviip~l~~aivDgtap 91 (367)
T PRK06851 16 RGFYSLYDSIIDGANRIFILKGGPGTGKSTLMKKIGEEFLEKGYDVEFLHCSSDNDSLDGVIIPELKIAILDGTAP 91 (367)
T ss_pred CchhhhhhhhccccceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEcCCCCCceeeEEecCCCEEEEcCCCc
Confidence 4567788877655555689999999999999999764321 1 11 1222333444555677788888 443
No 452
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.29 E-value=0.00016 Score=49.94 Aligned_cols=22 Identities=36% Similarity=0.520 Sum_probs=17.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 029446 19 RVVMLGLDAAGKTTILYKLHIG 40 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~~ 40 (193)
||+|.|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7999999999999999999865
No 453
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.28 E-value=0.00026 Score=41.51 Aligned_cols=21 Identities=29% Similarity=0.398 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 029446 20 VVMLGLDAAGKTTILYKLHIG 40 (193)
Q Consensus 20 v~v~G~~~~GKssli~~l~~~ 40 (193)
|++.|.+|+||||+.+.+...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 688999999999999998865
No 454
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.27 E-value=0.00028 Score=47.12 Aligned_cols=26 Identities=27% Similarity=0.220 Sum_probs=22.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcc
Q 029446 18 MRVVMLGLDAAGKTTILYKLHIGEVL 43 (193)
Q Consensus 18 ~~v~v~G~~~~GKssli~~l~~~~~~ 43 (193)
=.++|+|+.|+|||||++.+.+...+
T Consensus 12 ~~~~i~G~nGsGKStLl~~l~g~~~~ 37 (137)
T PF00005_consen 12 EIVAIVGPNGSGKSTLLKALAGLLPP 37 (137)
T ss_dssp SEEEEEESTTSSHHHHHHHHTTSSHE
T ss_pred CEEEEEccCCCccccceeeecccccc
Confidence 36899999999999999998876543
No 455
>PRK05439 pantothenate kinase; Provisional
Probab=97.26 E-value=0.0004 Score=52.89 Aligned_cols=35 Identities=17% Similarity=0.128 Sum_probs=28.5
Q ss_pred HHHHhhhhcCCCccEEEEEcCCCCCHHHHHHHHhc
Q 029446 5 FRKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHI 39 (193)
Q Consensus 5 ~~~~~~~~~~~~~~~v~v~G~~~~GKssli~~l~~ 39 (193)
+..|+........+-|+|.|.+||||||+.+.+..
T Consensus 74 ~~~fl~~~~~~~~~iIgIaG~~gsGKSTla~~L~~ 108 (311)
T PRK05439 74 LEQFLGKNGQKVPFIIGIAGSVAVGKSTTARLLQA 108 (311)
T ss_pred HHHHhcccCCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 44555555667889999999999999999988875
No 456
>PRK01889 GTPase RsgA; Reviewed
Probab=97.23 E-value=0.00049 Score=53.67 Aligned_cols=25 Identities=36% Similarity=0.464 Sum_probs=22.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCc
Q 029446 18 MRVVMLGLDAAGKTTILYKLHIGEV 42 (193)
Q Consensus 18 ~~v~v~G~~~~GKssli~~l~~~~~ 42 (193)
-+++++|.+|+|||||+|.+.+...
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~~~ 220 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGEEV 220 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHhcc
Confidence 4789999999999999999997544
No 457
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=97.22 E-value=0.00046 Score=52.11 Aligned_cols=27 Identities=22% Similarity=0.140 Sum_probs=22.6
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhc
Q 029446 13 FGNSEMRVVMLGLDAAGKTTILYKLHI 39 (193)
Q Consensus 13 ~~~~~~~v~v~G~~~~GKssli~~l~~ 39 (193)
....++-|+|.|++|||||||++.+.+
T Consensus 58 ~~~~p~IIGIaG~~GSGKSTlar~L~~ 84 (290)
T TIGR00554 58 GAKIPYIISIAGSVAVGKSTTARILQA 84 (290)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 345679999999999999999987653
No 458
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=97.18 E-value=0.014 Score=40.57 Aligned_cols=66 Identities=11% Similarity=-0.031 Sum_probs=43.7
Q ss_pred EEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 029446 62 IFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA 133 (193)
Q Consensus 62 ~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 133 (193)
.+.++|+|+..... ....+..+|.++++++++. .++......+..+... ......++.|+.|....
T Consensus 64 d~viiD~p~~~~~~--~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~~~~~---~~~~~~iv~N~~~~~~~ 129 (179)
T cd02036 64 DYILIDSPAGIERG--FITAIAPADEALLVTTPEI-SSLRDADRVKGLLEAL---GIKVVGVIVNRVRPDMV 129 (179)
T ss_pred CEEEEECCCCCcHH--HHHHHHhCCcEEEEeCCCc-chHHHHHHHHHHHHHc---CCceEEEEEeCCccccc
Confidence 79999999865432 3445688999999998873 3455554544444321 22346799999986543
No 459
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=97.16 E-value=0.00096 Score=45.86 Aligned_cols=52 Identities=25% Similarity=0.295 Sum_probs=37.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEEEEEcCEEEEEEecCCCCCCHH
Q 029446 19 RVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRP 76 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~ 76 (193)
-+.++|..|+|||||+.++...- ..-|..+..+.+.+-. --.|++|.+.++.
T Consensus 4 Il~ivG~k~SGKTTLie~lv~~L-----~~~G~rVa~iKH~hh~-~~~D~~GkDs~r~ 55 (161)
T COG1763 4 ILGIVGYKNSGKTTLIEKLVRKL-----KARGYRVATVKHAHHD-FDLDKPGKDTYRH 55 (161)
T ss_pred EEEEEecCCCChhhHHHHHHHHH-----HhCCcEEEEEEecCCC-CCCCCCCCccchh
Confidence 47899999999999999997432 2335566666665444 5578888777664
No 460
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.16 E-value=0.00036 Score=50.92 Aligned_cols=23 Identities=35% Similarity=0.378 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 029446 19 RVVMLGLDAAGKTTILYKLHIGE 41 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~~~ 41 (193)
-|+++|++|||||||+|-+.+-.
T Consensus 31 fvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 36899999999999999998743
No 461
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=97.11 E-value=0.00048 Score=46.39 Aligned_cols=23 Identities=35% Similarity=0.380 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 029446 19 RVVMLGLDAAGKTTILYKLHIGE 41 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~~~ 41 (193)
.|.|+|..|+|||||+..+.+.-
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~l 24 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINEL 24 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998653
No 462
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.10 E-value=0.00046 Score=51.85 Aligned_cols=120 Identities=18% Similarity=0.081 Sum_probs=67.2
Q ss_pred EEEEecCCCC-CCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHh
Q 029446 63 FTVWDVGGQE-KLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCE 141 (193)
Q Consensus 63 ~~i~D~~g~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~ 141 (193)
...-+.||+. .--+.....+...|++|=+=|+.-|-| .--..+.++. ..+|-|+|.||+||.+..+...+.+
T Consensus 24 ~~~~wfpgHmakalr~i~~~l~~~D~iiEvrDaRiPLs--srn~~~~~~~-----~~k~riiVlNK~DLad~~~~k~~iq 96 (335)
T KOG2485|consen 24 MPRRWFPGHMAKALRAIQNRLPLVDCIIEVRDARIPLS--SRNELFQDFL-----PPKPRIIVLNKMDLADPKEQKKIIQ 96 (335)
T ss_pred CccccCchHHHHHHHHHHhhcccccEEEEeeccccCCc--cccHHHHHhc-----CCCceEEEEecccccCchhhhHHHH
Confidence 3344556654 233344556688999999999954433 2224445543 3678899999999999644444444
Q ss_pred hhCCCcCCCCceEEEEeccccCCC--HHHHHH---HHHHHHHhhhc----------cCCCCCCcCCC
Q 029446 142 GLGLFDLKNRKWHIQGTCALKGDG--LYEGLD---WLASTLKEMRA----------AGYSSVGTSSF 193 (193)
Q Consensus 142 ~~~~~~~~~~~~~~~~~Sa~~~~g--i~~~~~---~l~~~~~~~~~----------~~~~~~~~~~~ 193 (193)
.+.-. ....++..++....+ +..++. ++...+....+ -|-|++||||+
T Consensus 97 ~~~~~----~~~~~~~~~c~~~~~~~v~~l~~il~~~~~~l~r~irt~~~~~~vmVvGvPNVGKSsL 159 (335)
T KOG2485|consen 97 YLEWQ----NLESYIKLDCNKDCNKQVSPLLKILTILSEELVRFIRTLNSEYNVMVVGVPNVGKSSL 159 (335)
T ss_pred HHHhh----cccchhhhhhhhhhhhccccHHHHHHHHHHHHHHhhcccCCceeEEEEcCCCCChHHH
Confidence 33321 111233334333332 444444 44443333333 17899999974
No 463
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.10 E-value=0.00054 Score=49.35 Aligned_cols=26 Identities=19% Similarity=0.231 Sum_probs=23.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcC
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHIG 40 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~~ 40 (193)
.+.+.|+|.|.+|||||||.+.+...
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999998764
No 464
>PRK03839 putative kinase; Provisional
Probab=97.09 E-value=0.00047 Score=48.45 Aligned_cols=23 Identities=30% Similarity=0.328 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q 029446 18 MRVVMLGLDAAGKTTILYKLHIG 40 (193)
Q Consensus 18 ~~v~v~G~~~~GKssli~~l~~~ 40 (193)
++|+++|.+||||||+.+.+...
T Consensus 1 m~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 1 MIIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 36999999999999999998764
No 465
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.09 E-value=0.00046 Score=49.97 Aligned_cols=25 Identities=28% Similarity=0.275 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCcc
Q 029446 19 RVVMLGLDAAGKTTILYKLHIGEVL 43 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~~~~~ 43 (193)
-|+|+|++|||||||+|-+.+-..+
T Consensus 33 ~vaI~GpSGSGKSTLLniig~ld~p 57 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGLDKP 57 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhcccCC
Confidence 5799999999999999998764443
No 466
>PRK06217 hypothetical protein; Validated
Probab=97.09 E-value=0.00047 Score=48.61 Aligned_cols=23 Identities=30% Similarity=0.375 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q 029446 18 MRVVMLGLDAAGKTTILYKLHIG 40 (193)
Q Consensus 18 ~~v~v~G~~~~GKssli~~l~~~ 40 (193)
.+|+|+|.+||||||+.++|...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999998864
No 467
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.08 E-value=0.00048 Score=45.45 Aligned_cols=22 Identities=27% Similarity=0.292 Sum_probs=19.4
Q ss_pred EEEEcCCCCCHHHHHHHHhcCC
Q 029446 20 VVMLGLDAAGKTTILYKLHIGE 41 (193)
Q Consensus 20 v~v~G~~~~GKssli~~l~~~~ 41 (193)
|++.|++|+|||++++.+...-
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 6899999999999999998653
No 468
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.07 E-value=0.00065 Score=47.62 Aligned_cols=28 Identities=25% Similarity=0.286 Sum_probs=17.9
Q ss_pred hcCCCccEEEEEcCCCCCHHHHHHHHhc
Q 029446 12 FFGNSEMRVVMLGLDAAGKTTILYKLHI 39 (193)
Q Consensus 12 ~~~~~~~~v~v~G~~~~GKssli~~l~~ 39 (193)
......-.++|.|++|+|||+|++++..
T Consensus 19 ~~~~~~~~~ll~G~~G~GKT~ll~~~~~ 46 (185)
T PF13191_consen 19 AQSGSPRNLLLTGESGSGKTSLLRALLD 46 (185)
T ss_dssp TSS-----EEE-B-TTSSHHHHHHHHHH
T ss_pred HHcCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3455567899999999999999998764
No 469
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.06 E-value=0.00058 Score=49.14 Aligned_cols=25 Identities=24% Similarity=0.224 Sum_probs=22.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhc
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHI 39 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~ 39 (193)
....-|+|+|++|||||||++.+.+
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999999975
No 470
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.05 E-value=0.00056 Score=44.94 Aligned_cols=21 Identities=33% Similarity=0.425 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 029446 20 VVMLGLDAAGKTTILYKLHIG 40 (193)
Q Consensus 20 v~v~G~~~~GKssli~~l~~~ 40 (193)
|+|.|.+||||||+++.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999865
No 471
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.05 E-value=0.00046 Score=50.56 Aligned_cols=29 Identities=28% Similarity=0.399 Sum_probs=24.4
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhcCC
Q 029446 13 FGNSEMRVVMLGLDAAGKTTILYKLHIGE 41 (193)
Q Consensus 13 ~~~~~~~v~v~G~~~~GKssli~~l~~~~ 41 (193)
.-...++++|+|.+|||||+|+..+....
T Consensus 9 l~~~~fr~viIG~sGSGKT~li~~lL~~~ 37 (241)
T PF04665_consen 9 LLKDPFRMVIIGKSGSGKTTLIKSLLYYL 37 (241)
T ss_pred hcCCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 33577899999999999999999887543
No 472
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.05 E-value=0.0044 Score=49.35 Aligned_cols=128 Identities=14% Similarity=0.151 Sum_probs=75.3
Q ss_pred HHHHhhhhcCCCccEEEEEcCCCCCHHHHHHHHh----cCCccc------c-------------------cc-cccee--
Q 029446 5 FRKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLH----IGEVLS------T-------------------VP-TIGFN-- 52 (193)
Q Consensus 5 ~~~~~~~~~~~~~~~v~v~G~~~~GKssli~~l~----~~~~~~------~-------------------~~-t~~~~-- 52 (193)
++.+.......++|-|.++|-.|+||||-+..++ .+.+.- + .+ .++..
T Consensus 366 LRdI~sar~~krPYVi~fvGVNGVGKSTNLAKIayWLlqNkfrVLIAACDTFRsGAvEQLrtHv~rl~~l~~~~v~lfek 445 (587)
T KOG0781|consen 366 LRDIMSARRRKRPYVISFVGVNGVGKSTNLAKIAYWLLQNKFRVLIAACDTFRSGAVEQLRTHVERLSALHGTMVELFEK 445 (587)
T ss_pred HHHHHHHHhcCCCeEEEEEeecCccccchHHHHHHHHHhCCceEEEEeccchhhhHHHHHHHHHHHHHHhccchhHHHhh
Confidence 4555566667799999999999999999876653 332210 0 00 00000
Q ss_pred -EE------------EEEEcCEEEEEEecCCCCCCHHhHHhh------hcCCCEEEEEEECC-ChhhHHHHHHHHHHHHc
Q 029446 53 -VE------------KVQYKNVIFTVWDVGGQEKLRPLWRHY------FNNTDGLIYVVDSL-DRERIGKAKQEFQAIIK 112 (193)
Q Consensus 53 -~~------------~~~~~~~~~~i~D~~g~~~~~~~~~~~------~~~~d~~i~v~d~~-~~~s~~~~~~~~~~~~~ 112 (193)
|. .....+..+.+.||+|........-.. ....|.+++|-.+- .-++++.+..+-..+..
T Consensus 446 GYgkd~a~vak~AI~~a~~~gfDVvLiDTAGR~~~~~~lm~~l~k~~~~~~pd~i~~vgealvg~dsv~q~~~fn~al~~ 525 (587)
T KOG0781|consen 446 GYGKDAAGVAKEAIQEARNQGFDVVLIDTAGRMHNNAPLMTSLAKLIKVNKPDLILFVGEALVGNDSVDQLKKFNRALAD 525 (587)
T ss_pred hcCCChHHHHHHHHHHHHhcCCCEEEEeccccccCChhHHHHHHHHHhcCCCceEEEehhhhhCcHHHHHHHHHHHHHhc
Confidence 00 011136789999999966544332211 23689999997653 34556666555555444
Q ss_pred CCCCCCCeEEEEEeCCCCCCC
Q 029446 113 DPFMLNSVILVFANKQDMKGA 133 (193)
Q Consensus 113 ~~~~~~~p~ivv~nK~Dl~~~ 133 (193)
....+.+. -++++|+|..++
T Consensus 526 ~~~~r~id-~~~ltk~dtv~d 545 (587)
T KOG0781|consen 526 HSTPRLID-GILLTKFDTVDD 545 (587)
T ss_pred CCCccccc-eEEEEeccchhh
Confidence 32111222 378899998775
No 473
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=97.04 E-value=0.00096 Score=48.81 Aligned_cols=29 Identities=24% Similarity=0.100 Sum_probs=24.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCc
Q 029446 14 GNSEMRVVMLGLDAAGKTTILYKLHIGEV 42 (193)
Q Consensus 14 ~~~~~~v~v~G~~~~GKssli~~l~~~~~ 42 (193)
..+.+-|+|.|++|||||||++.+.+...
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~ 58 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQ 58 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 35789999999999999999999886443
No 474
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.03 E-value=0.00058 Score=47.46 Aligned_cols=22 Identities=32% Similarity=0.425 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 029446 19 RVVMLGLDAAGKTTILYKLHIG 40 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~~ 40 (193)
+|.+.|++|+||||+++++...
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~ 22 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEE 22 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHH
Confidence 6899999999999999998754
No 475
>PRK08233 hypothetical protein; Provisional
Probab=97.03 E-value=0.0007 Score=47.44 Aligned_cols=24 Identities=21% Similarity=0.293 Sum_probs=21.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q 029446 17 EMRVVMLGLDAAGKTTILYKLHIG 40 (193)
Q Consensus 17 ~~~v~v~G~~~~GKssli~~l~~~ 40 (193)
.+-|+|.|.+|||||||.+++...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 467889999999999999999754
No 476
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.02 E-value=0.00064 Score=48.06 Aligned_cols=22 Identities=23% Similarity=0.418 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 029446 19 RVVMLGLDAAGKTTILYKLHIG 40 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~~ 40 (193)
.++|+|++|+|||||++.+.+.
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5889999999999999999764
No 477
>PHA00729 NTP-binding motif containing protein
Probab=97.02 E-value=0.0012 Score=47.89 Aligned_cols=35 Identities=26% Similarity=0.414 Sum_probs=27.0
Q ss_pred HHHhhhhcCCCccEEEEEcCCCCCHHHHHHHHhcC
Q 029446 6 RKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIG 40 (193)
Q Consensus 6 ~~~~~~~~~~~~~~v~v~G~~~~GKssli~~l~~~ 40 (193)
++..+.+....-.+|++.|+||+|||+|..++...
T Consensus 6 k~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 6 KKIVSAYNNNGFVSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred HHHHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 44445455555679999999999999999988754
No 478
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.99 E-value=0.00061 Score=47.78 Aligned_cols=22 Identities=27% Similarity=0.345 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 029446 19 RVVMLGLDAAGKTTILYKLHIG 40 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~~ 40 (193)
.++|+|++||||||+++.+...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998764
No 479
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.98 E-value=0.00077 Score=44.55 Aligned_cols=27 Identities=22% Similarity=0.207 Sum_probs=22.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc
Q 029446 18 MRVVMLGLDAAGKTTILYKLHIGEVLS 44 (193)
Q Consensus 18 ~~v~v~G~~~~GKssli~~l~~~~~~~ 44 (193)
-.++++|++|+|||+++..+.......
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~ 29 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPP 29 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCC
Confidence 468999999999999999998765543
No 480
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=96.96 E-value=0.00074 Score=45.31 Aligned_cols=21 Identities=33% Similarity=0.515 Sum_probs=19.3
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 029446 20 VVMLGLDAAGKTTILYKLHIG 40 (193)
Q Consensus 20 v~v~G~~~~GKssli~~l~~~ 40 (193)
|+++|++|+|||||++.+...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999875
No 481
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=96.96 E-value=0.00077 Score=50.55 Aligned_cols=26 Identities=27% Similarity=0.316 Sum_probs=22.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCC
Q 029446 16 SEMRVVMLGLDAAGKTTILYKLHIGE 41 (193)
Q Consensus 16 ~~~~v~v~G~~~~GKssli~~l~~~~ 41 (193)
..-.|++.|++||||||+++.+....
T Consensus 126 ~~~~ili~G~tGSGKTT~l~all~~i 151 (270)
T PF00437_consen 126 GRGNILISGPTGSGKTTLLNALLEEI 151 (270)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHC
T ss_pred cceEEEEECCCccccchHHHHHhhhc
Confidence 46799999999999999999998533
No 482
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=96.96 E-value=0.00067 Score=45.60 Aligned_cols=25 Identities=20% Similarity=0.343 Sum_probs=22.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhc
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHI 39 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~ 39 (193)
+..++|+|.|-||+|||||..++..
T Consensus 5 r~~PNILvtGTPG~GKstl~~~lae 29 (176)
T KOG3347|consen 5 RERPNILVTGTPGTGKSTLAERLAE 29 (176)
T ss_pred hcCCCEEEeCCCCCCchhHHHHHHH
Confidence 6778999999999999999999874
No 483
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.96 E-value=0.00066 Score=48.45 Aligned_cols=21 Identities=24% Similarity=0.279 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 029446 20 VVMLGLDAAGKTTILYKLHIG 40 (193)
Q Consensus 20 v~v~G~~~~GKssli~~l~~~ 40 (193)
|+|.|++|||||||++.+.+.
T Consensus 2 igi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998764
No 484
>PRK04195 replication factor C large subunit; Provisional
Probab=96.95 E-value=0.0081 Score=48.96 Aligned_cols=25 Identities=20% Similarity=0.274 Sum_probs=21.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q 029446 17 EMRVVMLGLDAAGKTTILYKLHIGE 41 (193)
Q Consensus 17 ~~~v~v~G~~~~GKssli~~l~~~~ 41 (193)
.-.+++.|++|+||||+++.+.+..
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el 63 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDY 63 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 4578999999999999999997643
No 485
>KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism]
Probab=96.94 E-value=0.025 Score=42.70 Aligned_cols=29 Identities=31% Similarity=0.386 Sum_probs=23.4
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCc
Q 029446 14 GNSEMRVVMLGLDAAGKTTILYKLHIGEV 42 (193)
Q Consensus 14 ~~~~~~v~v~G~~~~GKssli~~l~~~~~ 42 (193)
..+.+--++.|.-|+|||||+|.+..+..
T Consensus 54 ~~rIPvtIITGyLGaGKtTLLn~Il~~~h 82 (391)
T KOG2743|consen 54 GARIPVTIITGYLGAGKTTLLNYILTGQH 82 (391)
T ss_pred CCccceEEEEecccCChHHHHHHHHccCC
Confidence 34556678899999999999999987543
No 486
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=96.92 E-value=0.001 Score=46.44 Aligned_cols=26 Identities=35% Similarity=0.309 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcc
Q 029446 18 MRVVMLGLDAAGKTTILYKLHIGEVL 43 (193)
Q Consensus 18 ~~v~v~G~~~~GKssli~~l~~~~~~ 43 (193)
=.|+|+|++|+|||||+|-+.+-..+
T Consensus 26 e~vAi~GpSGaGKSTLLnLIAGF~~P 51 (231)
T COG3840 26 EIVAILGPSGAGKSTLLNLIAGFETP 51 (231)
T ss_pred cEEEEECCCCccHHHHHHHHHhccCC
Confidence 37899999999999999998875443
No 487
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.92 E-value=0.00083 Score=45.02 Aligned_cols=22 Identities=32% Similarity=0.416 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 029446 19 RVVMLGLDAAGKTTILYKLHIG 40 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~~ 40 (193)
.|+++|++|+|||+|++.+...
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~ 22 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAAL 22 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 3799999999999999988753
No 488
>PRK14530 adenylate kinase; Provisional
Probab=96.92 E-value=0.00078 Score=48.77 Aligned_cols=22 Identities=36% Similarity=0.428 Sum_probs=19.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 029446 18 MRVVMLGLDAAGKTTILYKLHI 39 (193)
Q Consensus 18 ~~v~v~G~~~~GKssli~~l~~ 39 (193)
.+|+|+|+|||||||+.+.|..
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999998864
No 489
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.91 E-value=0.00094 Score=47.83 Aligned_cols=24 Identities=38% Similarity=0.425 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCc
Q 029446 19 RVVMLGLDAAGKTTILYKLHIGEV 42 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~~~~ 42 (193)
.++++|++|||||||++.+.+=..
T Consensus 30 vv~iiGpSGSGKSTlLRclN~LE~ 53 (240)
T COG1126 30 VVVIIGPSGSGKSTLLRCLNGLEE 53 (240)
T ss_pred EEEEECCCCCCHHHHHHHHHCCcC
Confidence 678999999999999988765433
No 490
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.91 E-value=0.0015 Score=46.20 Aligned_cols=26 Identities=27% Similarity=0.293 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCC
Q 029446 16 SEMRVVMLGLDAAGKTTILYKLHIGE 41 (193)
Q Consensus 16 ~~~~v~v~G~~~~GKssli~~l~~~~ 41 (193)
..-.++++|+.|+|||||++.+.+-.
T Consensus 24 ~g~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 24 ARKNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 45679999999999999999988643
No 491
>PRK13949 shikimate kinase; Provisional
Probab=96.91 E-value=0.00085 Score=46.71 Aligned_cols=22 Identities=36% Similarity=0.451 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 029446 19 RVVMLGLDAAGKTTILYKLHIG 40 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~~ 40 (193)
+|+|+|.+||||||+.+.+...
T Consensus 3 ~I~liG~~GsGKstl~~~La~~ 24 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARE 24 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999988753
No 492
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=96.90 E-value=0.00092 Score=42.66 Aligned_cols=21 Identities=29% Similarity=0.423 Sum_probs=18.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHh
Q 029446 18 MRVVMLGLDAAGKTTILYKLH 38 (193)
Q Consensus 18 ~~v~v~G~~~~GKssli~~l~ 38 (193)
-.++++|++|+|||||++.+.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh
Confidence 357999999999999999976
No 493
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=96.89 E-value=0.00074 Score=49.09 Aligned_cols=21 Identities=29% Similarity=0.219 Sum_probs=18.9
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 029446 20 VVMLGLDAAGKTTILYKLHIG 40 (193)
Q Consensus 20 v~v~G~~~~GKssli~~l~~~ 40 (193)
|+|.|++|||||||++.+.+.
T Consensus 2 igI~G~sGSGKTTla~~L~~~ 22 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQAL 22 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHHH
Confidence 689999999999999998854
No 494
>PRK14495 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/unknown domain fusion protein; Provisional
Probab=96.89 E-value=0.002 Score=51.04 Aligned_cols=51 Identities=25% Similarity=0.302 Sum_probs=36.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEEEEEcCEEEEEEecCCCCCCH
Q 029446 19 RVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLR 75 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~ 75 (193)
-+.|+|..|+|||||+.++...- ...|..+..+++....+. .|.+|.+.++
T Consensus 3 Vi~IvG~sgSGKTTLiekLI~~L-----~~rG~rVavIKH~hH~fd-~D~~GKDS~r 53 (452)
T PRK14495 3 VYGIIGWKDAGKTGLVERLVAAI-----AARGFSVSTVKHSHHDVD-PDPPGSDSHR 53 (452)
T ss_pred EEEEEecCCCCHHHHHHHHHHHH-----HhCCCeEEEEeccCcccC-CCCCCCCchh
Confidence 36899999999999999998432 234666777766555444 3788876665
No 495
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.89 E-value=0.001 Score=46.83 Aligned_cols=22 Identities=23% Similarity=0.197 Sum_probs=19.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHh
Q 029446 17 EMRVVMLGLDAAGKTTILYKLH 38 (193)
Q Consensus 17 ~~~v~v~G~~~~GKssli~~l~ 38 (193)
...|+++|.+||||||+++.+.
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~ 24 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIV 24 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3578999999999999999997
No 496
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=96.88 E-value=0.0096 Score=47.11 Aligned_cols=27 Identities=30% Similarity=0.465 Sum_probs=22.8
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcC
Q 029446 14 GNSEMRVVMLGLDAAGKTTILYKLHIG 40 (193)
Q Consensus 14 ~~~~~~v~v~G~~~~GKssli~~l~~~ 40 (193)
......++|.|++|+|||++++.+...
T Consensus 52 ~~~~~~~lI~G~~GtGKT~l~~~v~~~ 78 (394)
T PRK00411 52 GSRPLNVLIYGPPGTGKTTTVKKVFEE 78 (394)
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 345567999999999999999999864
No 497
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=96.87 E-value=0.001 Score=48.24 Aligned_cols=24 Identities=29% Similarity=0.314 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCc
Q 029446 19 RVVMLGLDAAGKTTILYKLHIGEV 42 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~~~~ 42 (193)
.++|+|+.|+|||||++.+.+-..
T Consensus 32 ~~~l~G~nGsGKSTLl~~i~Gl~~ 55 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGLDR 55 (218)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCcC
Confidence 679999999999999999987543
No 498
>PRK06547 hypothetical protein; Provisional
Probab=96.87 E-value=0.0018 Score=45.22 Aligned_cols=27 Identities=30% Similarity=0.388 Sum_probs=23.5
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcC
Q 029446 14 GNSEMRVVMLGLDAAGKTTILYKLHIG 40 (193)
Q Consensus 14 ~~~~~~v~v~G~~~~GKssli~~l~~~ 40 (193)
......|+|.|.+||||||+.+.+...
T Consensus 12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 12 GGGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 467788999999999999999999754
No 499
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.87 E-value=0.00095 Score=46.80 Aligned_cols=23 Identities=26% Similarity=0.397 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 029446 19 RVVMLGLDAAGKTTILYKLHIGE 41 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~~~ 41 (193)
.++++|++||||||+++.+.+..
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHccC
Confidence 47899999999999999998743
No 500
>PRK14738 gmk guanylate kinase; Provisional
Probab=96.87 E-value=0.0012 Score=47.46 Aligned_cols=26 Identities=23% Similarity=0.388 Sum_probs=22.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcC
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHIG 40 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~~ 40 (193)
.+..-++|+|++|||||||++.|...
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 45567889999999999999999764
Done!