Query 029446
Match_columns 193
No_of_seqs 124 out of 1755
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 21:29:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029446.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029446hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zj6_A ADP-ribosylation factor 100.0 3.6E-38 1.2E-42 222.4 20.1 180 1-181 1-180 (187)
2 1moz_A ARL1, ADP-ribosylation 100.0 8.6E-38 2.9E-42 219.5 20.3 181 1-181 1-182 (183)
3 2x77_A ADP-ribosylation factor 100.0 1.3E-37 4.5E-42 219.8 18.9 181 1-181 3-186 (189)
4 2b6h_A ADP-ribosylation factor 100.0 4.6E-37 1.6E-41 217.8 18.9 173 7-179 19-191 (192)
5 1ksh_A ARF-like protein 2; sma 100.0 1E-36 3.5E-41 214.7 20.4 178 1-180 3-181 (186)
6 1fzq_A ADP-ribosylation factor 100.0 1.8E-36 6.3E-41 212.7 19.1 166 15-180 14-179 (181)
7 1upt_A ARL1, ADP-ribosylation 100.0 5.9E-36 2E-40 207.7 21.4 166 15-180 5-170 (171)
8 1r8s_A ADP-ribosylation factor 100.0 3.3E-36 1.1E-40 207.8 19.5 163 18-180 1-163 (164)
9 4dkx_A RAS-related protein RAB 100.0 1.3E-37 4.4E-42 223.9 10.4 161 14-180 10-177 (216)
10 1m2o_B GTP-binding protein SAR 100.0 2.7E-35 9.2E-40 208.4 19.3 164 13-176 19-189 (190)
11 4bas_A ADP-ribosylation factor 100.0 1.3E-35 4.4E-40 211.0 17.3 171 12-182 12-192 (199)
12 1zd9_A ADP-ribosylation factor 100.0 2.7E-35 9.2E-40 207.9 18.6 167 14-180 19-186 (188)
13 2h17_A ADP-ribosylation factor 100.0 2.7E-35 9.2E-40 206.7 17.3 164 13-176 17-180 (181)
14 1f6b_A SAR1; gtpases, N-termin 100.0 1.1E-34 3.7E-39 206.5 17.9 165 13-177 21-197 (198)
15 2h57_A ADP-ribosylation factor 100.0 3.2E-34 1.1E-38 202.6 20.1 166 14-179 18-187 (190)
16 3o47_A ADP-ribosylation factor 100.0 8.7E-34 3E-38 216.1 18.2 166 15-180 163-328 (329)
17 3t5g_A GTP-binding protein RHE 100.0 2.1E-34 7.2E-39 201.9 11.5 172 14-192 3-180 (181)
18 3q72_A GTP-binding protein RAD 100.0 1.3E-33 4.6E-38 195.0 13.1 160 17-180 2-165 (166)
19 3lvq_E ARF-GAP with SH3 domain 100.0 1.4E-32 4.8E-37 220.3 19.9 168 15-182 320-487 (497)
20 1x3s_A RAS-related protein RAB 100.0 2E-32 6.9E-37 193.8 17.5 173 15-192 13-194 (195)
21 2nzj_A GTP-binding protein REM 100.0 4.9E-33 1.7E-37 193.7 13.1 163 15-182 2-172 (175)
22 2fn4_A P23, RAS-related protei 100.0 7.8E-33 2.7E-37 193.5 12.1 168 13-184 5-177 (181)
23 3t1o_A Gliding protein MGLA; G 100.0 4.4E-32 1.5E-36 192.3 15.7 167 10-183 7-196 (198)
24 3bc1_A RAS-related protein RAB 100.0 8.2E-33 2.8E-37 195.5 11.9 168 11-183 5-189 (195)
25 2fu5_C RAS-related protein RAB 100.0 2.5E-33 8.4E-38 196.8 8.9 166 15-186 6-178 (183)
26 1ek0_A Protein (GTP-binding pr 100.0 4.9E-33 1.7E-37 192.6 10.2 158 16-178 2-168 (170)
27 1z0f_A RAB14, member RAS oncog 100.0 1.4E-32 4.7E-37 192.0 11.8 166 8-179 6-178 (179)
28 3kkq_A RAS-related protein M-R 100.0 1E-32 3.5E-37 193.6 11.2 162 13-179 14-182 (183)
29 3tkl_A RAS-related protein RAB 100.0 2.3E-32 7.8E-37 193.7 13.0 165 15-184 14-184 (196)
30 3ihw_A Centg3; RAS, centaurin, 100.0 2.2E-31 7.4E-36 187.4 17.9 160 12-181 15-182 (184)
31 2hup_A RAS-related protein RAB 100.0 2.2E-32 7.5E-37 195.0 12.9 163 14-182 26-196 (201)
32 3oes_A GTPase rhebl1; small GT 100.0 4.8E-33 1.6E-37 198.3 9.4 167 12-182 19-190 (201)
33 1u8z_A RAS-related protein RAL 100.0 2.2E-32 7.5E-37 188.9 11.9 159 16-179 3-167 (168)
34 4dsu_A GTPase KRAS, isoform 2B 100.0 1.5E-31 5.3E-36 188.3 16.1 164 15-182 2-169 (189)
35 1c1y_A RAS-related protein RAP 100.0 2E-32 6.8E-37 189.1 11.3 158 16-178 2-166 (167)
36 2ew1_A RAS-related protein RAB 100.0 2.4E-32 8.3E-37 194.8 11.7 163 14-182 23-192 (201)
37 2bme_A RAB4A, RAS-related prot 100.0 3.9E-32 1.3E-36 191.0 12.3 165 15-185 8-179 (186)
38 2bov_A RAla, RAS-related prote 100.0 8.3E-32 2.8E-36 192.2 14.0 165 12-181 9-179 (206)
39 2g6b_A RAS-related protein RAB 100.0 4.6E-32 1.6E-36 189.7 12.0 162 14-181 7-176 (180)
40 1r2q_A RAS-related protein RAB 100.0 2.1E-32 7.3E-37 189.4 10.2 158 15-178 4-168 (170)
41 2oil_A CATX-8, RAS-related pro 100.0 9.3E-32 3.2E-36 190.3 13.6 162 14-181 22-190 (193)
42 2a5j_A RAS-related protein RAB 100.0 2.3E-32 7.8E-37 193.3 10.4 164 14-183 18-188 (191)
43 3cbq_A GTP-binding protein REM 100.0 3.7E-32 1.3E-36 193.0 11.5 165 12-181 18-190 (195)
44 1zbd_A Rabphilin-3A; G protein 100.0 9.8E-32 3.3E-36 191.7 13.7 163 15-183 6-175 (203)
45 2efe_B Small GTP-binding prote 100.0 5.6E-32 1.9E-36 189.4 12.1 163 13-181 8-177 (181)
46 2a9k_A RAS-related protein RAL 100.0 7.2E-32 2.5E-36 189.6 12.6 163 14-181 15-183 (187)
47 2hxs_A RAB-26, RAS-related pro 100.0 2.4E-32 8.3E-37 190.7 10.1 163 14-181 3-175 (178)
48 1g16_A RAS-related protein SEC 100.0 9.6E-32 3.3E-36 186.2 13.0 161 16-181 2-167 (170)
49 2gf9_A RAS-related protein RAB 100.0 6.4E-32 2.2E-36 190.7 12.3 163 13-181 18-187 (189)
50 2atv_A RERG, RAS-like estrogen 100.0 2.1E-32 7.1E-37 194.3 9.8 168 8-181 19-193 (196)
51 3q85_A GTP-binding protein REM 100.0 5.4E-32 1.8E-36 187.5 11.6 159 17-180 2-168 (169)
52 3q3j_B RHO-related GTP-binding 100.0 1.5E-32 5.2E-37 197.6 8.8 163 13-182 23-206 (214)
53 1z08_A RAS-related protein RAB 100.0 2.8E-32 9.7E-37 188.9 9.8 159 15-179 4-169 (170)
54 3tw8_B RAS-related protein RAB 100.0 5.5E-32 1.9E-36 189.2 11.3 162 14-182 6-174 (181)
55 3dz8_A RAS-related protein RAB 100.0 9.5E-33 3.2E-37 195.3 7.5 162 15-182 21-189 (191)
56 2fg5_A RAB-22B, RAS-related pr 100.0 5.8E-32 2E-36 191.4 11.5 161 13-179 19-186 (192)
57 1kao_A RAP2A; GTP-binding prot 100.0 3.7E-32 1.3E-36 187.6 10.1 159 16-179 2-166 (167)
58 1wms_A RAB-9, RAB9, RAS-relate 100.0 7.4E-31 2.5E-35 183.0 16.7 163 14-180 4-175 (177)
59 2f7s_A C25KG, RAS-related prot 100.0 2.1E-32 7.2E-37 197.1 9.0 164 14-182 22-202 (217)
60 2iwr_A Centaurin gamma 1; ANK 100.0 2.8E-31 9.7E-36 185.5 14.3 160 14-182 4-172 (178)
61 1z0j_A RAB-22, RAS-related pro 100.0 9.5E-32 3.3E-36 186.2 11.6 159 15-178 4-168 (170)
62 1z06_A RAS-related protein RAB 100.0 3.3E-32 1.1E-36 192.1 9.4 164 12-179 15-188 (189)
63 1z2a_A RAS-related protein RAB 100.0 2.1E-32 7.3E-37 189.2 8.2 158 15-179 3-167 (168)
64 2p5s_A RAS and EF-hand domain 100.0 4.5E-32 1.5E-36 193.0 10.0 163 12-179 23-197 (199)
65 3clv_A RAB5 protein, putative; 100.0 2.2E-30 7.6E-35 184.4 18.8 160 14-181 4-206 (208)
66 2bcg_Y Protein YP2, GTP-bindin 100.0 1.4E-31 4.7E-36 191.4 12.5 161 15-181 6-173 (206)
67 2il1_A RAB12; G-protein, GDP, 100.0 1.3E-31 4.6E-36 189.6 12.0 163 13-180 22-191 (192)
68 3reg_A RHO-like small GTPase; 100.0 6.5E-32 2.2E-36 191.3 9.9 161 14-181 20-190 (194)
69 2o52_A RAS-related protein RAB 100.0 5.6E-32 1.9E-36 192.7 9.4 166 15-186 23-195 (200)
70 2ce2_X GTPase HRAS; signaling 100.0 2E-30 6.8E-35 178.6 16.4 160 16-179 2-165 (166)
71 3cph_A RAS-related protein SEC 100.0 1.5E-30 5.3E-35 186.6 16.2 166 12-182 15-185 (213)
72 2g3y_A GTP-binding protein GEM 100.0 1.9E-31 6.6E-36 191.2 11.3 163 14-181 34-205 (211)
73 3c5c_A RAS-like protein 12; GD 100.0 5.2E-32 1.8E-36 191.0 8.2 162 12-179 16-186 (187)
74 2y8e_A RAB-protein 6, GH09086P 100.0 7.8E-32 2.7E-36 188.1 8.8 159 15-179 12-177 (179)
75 3con_A GTPase NRAS; structural 100.0 1.9E-30 6.6E-35 183.1 15.9 166 12-182 16-186 (190)
76 2erx_A GTP-binding protein DI- 100.0 1E-31 3.5E-36 186.3 9.0 160 16-179 2-167 (172)
77 1ky3_A GTP-binding protein YPT 100.0 5.5E-31 1.9E-35 184.3 12.8 164 14-181 5-180 (182)
78 3cpj_B GTP-binding protein YPT 100.0 2E-31 6.7E-36 192.9 10.7 163 15-183 11-180 (223)
79 2fh5_B SR-beta, signal recogni 100.0 3.8E-30 1.3E-34 184.9 17.4 163 14-176 4-213 (214)
80 4djt_A GTP-binding nuclear pro 100.0 2.8E-31 9.5E-36 191.4 11.2 164 14-182 8-178 (218)
81 2gf0_A GTP-binding protein DI- 100.0 1.1E-30 3.7E-35 185.5 14.0 165 14-182 5-174 (199)
82 1vg8_A RAS-related protein RAB 100.0 1.6E-30 5.5E-35 185.7 14.9 165 14-181 5-177 (207)
83 2atx_A Small GTP binding prote 100.0 2.7E-30 9.2E-35 183.0 15.3 159 13-178 14-192 (194)
84 2q3h_A RAS homolog gene family 100.0 3.2E-30 1.1E-34 183.5 15.7 163 13-182 16-198 (201)
85 2j0v_A RAC-like GTP-binding pr 100.0 2.6E-31 9E-36 190.7 9.6 162 14-182 6-183 (212)
86 3bwd_D RAC-like GTP-binding pr 100.0 8E-31 2.7E-35 183.6 11.5 159 13-178 4-180 (182)
87 3gj0_A GTP-binding nuclear pro 100.0 7.1E-31 2.4E-35 189.7 10.5 164 12-182 10-178 (221)
88 1m7b_A RND3/RHOE small GTP-bin 100.0 2E-30 6.7E-35 182.3 12.5 159 14-179 4-183 (184)
89 2fv8_A H6, RHO-related GTP-bin 100.0 1.2E-29 4E-34 181.6 16.5 165 15-181 23-202 (207)
90 3llu_A RAS-related GTP-binding 100.0 1E-30 3.5E-35 185.6 10.4 163 12-177 15-195 (196)
91 2j1l_A RHO-related GTP-binding 100.0 7.8E-30 2.7E-34 183.4 14.9 165 15-181 32-211 (214)
92 2yc2_C IFT27, small RAB-relate 100.0 2.1E-31 7.1E-36 190.4 6.6 162 15-181 18-194 (208)
93 2gco_A H9, RHO-related GTP-bin 100.0 1.9E-30 6.6E-35 184.9 11.3 163 15-179 23-200 (201)
94 4gzl_A RAS-related C3 botulinu 100.0 2.4E-30 8E-35 184.9 11.7 163 13-177 26-203 (204)
95 1mh1_A RAC1; GTP-binding, GTPa 100.0 5.4E-30 1.8E-34 179.9 13.3 164 15-180 3-181 (186)
96 1gwn_A RHO-related GTP-binding 100.0 9.8E-30 3.4E-34 181.8 14.2 157 14-179 25-204 (205)
97 2zej_A Dardarin, leucine-rich 100.0 7.9E-31 2.7E-35 184.4 8.3 166 17-184 2-183 (184)
98 2cjw_A GTP-binding protein GEM 100.0 3.8E-30 1.3E-34 182.2 11.4 162 15-181 4-174 (192)
99 3l0i_B RAS-related protein RAB 100.0 4.1E-32 1.4E-36 193.2 1.2 157 15-180 31-197 (199)
100 2lkc_A Translation initiation 100.0 2.5E-28 8.6E-33 170.3 15.7 164 13-182 4-174 (178)
101 3r7w_B Gtpase2, GTP-binding pr 100.0 4.6E-29 1.6E-33 187.4 11.0 159 19-181 1-176 (331)
102 2qu8_A Putative nucleolar GTP- 100.0 6.4E-28 2.2E-32 175.0 16.0 161 15-181 27-207 (228)
103 3th5_A RAS-related C3 botulinu 99.9 8E-31 2.8E-35 187.2 0.0 163 13-177 26-203 (204)
104 1svi_A GTP-binding protein YSX 100.0 3.2E-28 1.1E-32 172.3 11.3 158 11-178 17-194 (195)
105 2wji_A Ferrous iron transport 100.0 3.9E-27 1.3E-31 162.7 15.7 147 16-177 2-163 (165)
106 3pqc_A Probable GTP-binding pr 100.0 4.8E-28 1.6E-32 171.1 10.5 162 11-179 17-194 (195)
107 2gj8_A MNME, tRNA modification 99.9 2.5E-27 8.5E-32 164.9 12.9 151 16-178 3-165 (172)
108 3r7w_A Gtpase1, GTP-binding pr 99.9 8.1E-28 2.8E-32 181.6 10.9 162 16-178 2-180 (307)
109 2dyk_A GTP-binding protein; GT 99.9 3.6E-27 1.2E-31 161.8 12.2 147 18-177 2-160 (161)
110 2cxx_A Probable GTP-binding pr 99.9 2.3E-28 8E-33 172.1 5.7 162 18-182 2-187 (190)
111 2wkq_A NPH1-1, RAS-related C3 99.9 8.9E-27 3.1E-31 177.5 14.8 163 15-179 153-330 (332)
112 2f9l_A RAB11B, member RAS onco 99.9 5E-27 1.7E-31 166.9 11.6 161 15-181 3-170 (199)
113 3c5h_A Glucocorticoid receptor 99.9 6.7E-28 2.3E-32 177.7 5.9 162 13-178 15-254 (255)
114 2wjg_A FEOB, ferrous iron tran 99.9 5.3E-26 1.8E-30 159.9 14.9 152 15-181 5-171 (188)
115 3a1s_A Iron(II) transport prot 99.9 1.1E-25 3.9E-30 165.9 16.1 149 15-178 3-166 (258)
116 2hjg_A GTP-binding protein ENG 99.9 5.1E-27 1.8E-31 185.1 7.7 164 17-193 3-191 (436)
117 1mky_A Probable GTP-binding pr 99.9 4.1E-26 1.4E-30 180.1 12.7 165 18-193 2-196 (439)
118 1oix_A RAS-related protein RAB 99.9 4.5E-26 1.5E-30 161.0 11.3 158 15-177 27-190 (191)
119 3iev_A GTP-binding protein ERA 99.9 1.5E-25 5E-30 169.3 14.7 161 13-179 6-182 (308)
120 3iby_A Ferrous iron transport 99.9 8.1E-26 2.8E-30 166.4 12.5 144 18-176 2-164 (256)
121 4dhe_A Probable GTP-binding pr 99.9 2.3E-26 7.8E-31 166.1 9.1 166 11-181 23-213 (223)
122 3b1v_A Ferrous iron uptake tra 99.9 2.7E-25 9.3E-30 164.8 13.3 147 16-178 2-163 (272)
123 3i8s_A Ferrous iron transport 99.9 1.8E-25 6.1E-30 166.3 12.2 149 16-179 2-169 (274)
124 2hjg_A GTP-binding protein ENG 99.9 1.3E-25 4.5E-30 177.1 11.6 161 16-181 174-351 (436)
125 1wf3_A GTP-binding protein; GT 99.9 4.4E-25 1.5E-29 166.0 13.8 156 15-179 5-173 (301)
126 3dpu_A RAB family protein; roc 99.9 4.1E-26 1.4E-30 184.1 8.6 158 14-181 38-210 (535)
127 3k53_A Ferrous iron transport 99.9 2.4E-24 8.1E-29 160.1 16.3 152 16-181 2-168 (271)
128 4dcu_A GTP-binding protein ENG 99.9 7E-26 2.4E-30 179.5 5.7 169 13-193 19-211 (456)
129 1nrj_B SR-beta, signal recogni 99.9 2.4E-26 8.2E-31 165.5 1.1 121 12-137 7-139 (218)
130 1lnz_A SPO0B-associated GTP-bi 99.9 1.6E-24 5.6E-29 165.1 11.3 158 18-181 159-332 (342)
131 2e87_A Hypothetical protein PH 99.9 1.3E-23 4.6E-28 161.7 16.4 159 15-180 165-337 (357)
132 3gee_A MNME, tRNA modification 99.9 4.5E-24 1.5E-28 169.1 14.0 149 16-178 232-397 (476)
133 3sjy_A Translation initiation 99.9 3.3E-24 1.1E-28 167.5 13.0 162 13-179 4-192 (403)
134 1xzp_A Probable tRNA modificat 99.9 4.9E-24 1.7E-28 169.1 13.8 150 17-179 243-405 (482)
135 4dcu_A GTP-binding protein ENG 99.9 3.1E-24 1.1E-28 170.1 10.7 162 15-181 193-371 (456)
136 3qq5_A Small GTP-binding prote 99.9 1.9E-24 6.4E-29 168.8 9.1 157 12-180 29-197 (423)
137 1cip_A Protein (guanine nucleo 99.9 1.4E-23 4.8E-28 160.5 13.6 135 47-181 179-346 (353)
138 3ohm_A Guanine nucleotide-bind 99.9 2.6E-23 9.1E-28 156.9 14.5 135 47-181 153-320 (327)
139 3geh_A MNME, tRNA modification 99.9 4.7E-23 1.6E-27 162.7 11.6 151 16-180 223-385 (462)
140 1wb1_A Translation elongation 99.9 2.5E-23 8.6E-28 165.5 10.1 156 15-178 17-188 (482)
141 2ged_A SR-beta, signal recogni 99.9 1.2E-23 3.9E-28 148.6 7.3 125 14-143 45-181 (193)
142 1s0u_A EIF-2-gamma, translatio 99.9 1.5E-22 5E-27 158.4 13.9 157 14-179 5-198 (408)
143 4fid_A G protein alpha subunit 99.9 6.5E-23 2.2E-27 155.3 11.3 133 47-179 147-328 (340)
144 1mky_A Probable GTP-binding pr 99.9 1.7E-22 5.7E-27 159.5 13.7 160 16-180 179-356 (439)
145 3izy_P Translation initiation 99.9 5.4E-24 1.9E-28 170.2 5.1 159 15-178 2-167 (537)
146 3tr5_A RF-3, peptide chain rel 99.9 3.3E-22 1.1E-26 160.3 15.1 114 15-133 11-149 (528)
147 1g7s_A Translation initiation 99.9 1.4E-22 4.8E-27 164.3 13.1 156 16-179 4-218 (594)
148 3lxw_A GTPase IMAP family memb 99.9 2.3E-22 7.7E-27 147.4 12.7 168 12-181 16-210 (247)
149 1ega_A Protein (GTP-binding pr 99.9 1E-22 3.6E-27 153.2 10.2 153 16-178 7-174 (301)
150 2elf_A Protein translation elo 99.9 2.4E-22 8.4E-27 154.9 12.4 147 19-179 23-180 (370)
151 1kk1_A EIF2gamma; initiation o 99.9 1.5E-22 5E-27 158.5 11.2 158 13-179 6-200 (410)
152 2xtp_A GTPase IMAP family memb 99.9 9.5E-22 3.3E-26 145.2 14.6 162 14-181 19-210 (260)
153 2qtf_A Protein HFLX, GTP-bindi 99.9 5.2E-22 1.8E-26 152.7 13.5 156 17-180 178-355 (364)
154 1zun_B Sulfate adenylate trans 99.9 1.1E-21 3.7E-26 154.6 15.3 161 5-169 12-214 (434)
155 3cb4_D GTP-binding protein LEP 99.9 9.7E-22 3.3E-26 159.3 14.6 155 16-180 3-183 (599)
156 3p26_A Elongation factor 1 alp 99.9 1.7E-22 5.7E-27 161.2 9.2 153 14-168 30-227 (483)
157 2c78_A Elongation factor TU-A; 99.9 7.1E-22 2.4E-26 154.4 12.3 160 14-178 8-211 (405)
158 1jny_A EF-1-alpha, elongation 99.9 4.3E-22 1.5E-26 156.9 10.9 154 15-171 4-205 (435)
159 2ywe_A GTP-binding protein LEP 99.9 2.8E-21 9.5E-26 156.4 15.8 158 16-180 5-185 (600)
160 3j2k_7 ERF3, eukaryotic polype 99.9 2.5E-21 8.6E-26 152.5 15.2 154 14-171 14-217 (439)
161 2xtz_A Guanine nucleotide-bind 99.9 5.4E-22 1.8E-26 151.7 10.3 123 59-181 181-347 (354)
162 3t5d_A Septin-7; GTP-binding p 99.9 1.6E-22 5.6E-27 150.4 7.2 158 15-178 6-203 (274)
163 1d2e_A Elongation factor TU (E 99.9 3.3E-22 1.1E-26 155.8 8.7 158 16-178 2-194 (397)
164 1zo1_I IF2, translation initia 99.9 5.8E-23 2E-27 163.0 4.4 153 15-176 2-164 (501)
165 3izq_1 HBS1P, elongation facto 99.9 2.9E-22 9.8E-27 163.3 8.3 153 15-169 165-362 (611)
166 2aka_B Dynamin-1; fusion prote 99.9 3.8E-21 1.3E-25 144.5 13.2 158 15-177 24-251 (299)
167 3lxx_A GTPase IMAP family memb 99.9 5.2E-22 1.8E-26 144.8 7.5 168 12-181 24-216 (239)
168 1r5b_A Eukaryotic peptide chai 99.9 5.7E-23 1.9E-27 163.1 1.2 157 13-170 39-243 (467)
169 1f60_A Elongation factor EEF1A 99.8 3.9E-21 1.3E-25 152.2 10.0 151 15-169 5-202 (458)
170 1zcb_A G alpha I/13; GTP-bindi 99.8 2.7E-20 9.3E-25 142.8 13.2 136 46-181 186-355 (362)
171 2h5e_A Peptide chain release f 99.8 6.8E-20 2.3E-24 147.1 16.0 115 15-134 11-150 (529)
172 3mca_A HBS1, elongation factor 99.8 1.2E-22 4.2E-27 165.0 -0.4 163 12-177 172-395 (592)
173 1dar_A EF-G, elongation factor 99.8 9.4E-20 3.2E-24 150.5 16.3 115 15-134 10-145 (691)
174 2qag_A Septin-2, protein NEDD5 99.8 1.6E-21 5.3E-26 150.1 4.6 162 13-181 33-235 (361)
175 3avx_A Elongation factor TS, e 99.8 2.9E-20 1E-24 157.8 10.1 160 14-178 293-485 (1289)
176 1pui_A ENGB, probable GTP-bind 99.8 4.9E-20 1.7E-24 131.6 9.7 159 12-179 21-199 (210)
177 2xex_A Elongation factor G; GT 99.8 7.7E-19 2.6E-23 145.2 17.6 116 13-133 6-142 (693)
178 2dy1_A Elongation factor G; tr 99.8 5.7E-19 2E-23 145.4 16.2 113 14-131 6-139 (665)
179 1azs_C GS-alpha; complex (lyas 99.8 1.4E-19 4.8E-24 140.0 11.8 135 47-181 203-387 (402)
180 2j69_A Bacterial dynamin-like 99.8 8.4E-20 2.9E-24 150.9 10.7 162 15-181 67-327 (695)
181 3def_A T7I23.11 protein; chlor 99.8 1.5E-19 5.2E-24 133.5 10.6 117 15-132 34-165 (262)
182 1jwy_B Dynamin A GTPase domain 99.8 5.4E-19 1.8E-23 133.8 12.8 160 15-179 22-262 (315)
183 1u0l_A Probable GTPase ENGC; p 99.8 4.5E-21 1.5E-25 144.3 0.9 147 32-193 32-185 (301)
184 2rdo_7 EF-G, elongation factor 99.8 3.4E-18 1.2E-22 141.5 17.9 115 14-133 7-149 (704)
185 1udx_A The GTP-binding protein 99.8 6E-19 2.1E-23 137.4 12.5 159 18-182 158-328 (416)
186 3t34_A Dynamin-related protein 99.8 4.3E-19 1.5E-23 136.7 8.9 153 16-176 33-258 (360)
187 1h65_A Chloroplast outer envel 99.8 3.4E-18 1.2E-22 126.8 10.7 118 15-133 37-169 (270)
188 2x2e_A Dynamin-1; nitration, h 99.8 1.6E-18 5.5E-23 133.2 7.6 155 15-175 29-254 (353)
189 3p32_A Probable GTPase RV1496/ 99.7 4.5E-18 1.5E-22 130.7 9.1 155 14-180 76-285 (355)
190 3vqt_A RF-3, peptide chain rel 99.7 1.5E-16 5E-21 128.3 15.5 113 16-133 30-167 (548)
191 2qnr_A Septin-2, protein NEDD5 99.7 2.8E-18 9.5E-23 129.0 4.3 161 13-181 14-216 (301)
192 1wxq_A GTP-binding protein; st 99.7 3.5E-18 1.2E-22 132.7 4.8 80 18-97 1-114 (397)
193 2qpt_A EH domain-containing pr 99.7 1.6E-17 5.4E-22 134.0 8.6 121 15-139 63-239 (550)
194 2www_A Methylmalonic aciduria 99.7 9.1E-17 3.1E-21 123.1 11.6 152 16-179 73-279 (349)
195 2wsm_A Hydrogenase expression/ 99.7 1.4E-17 4.7E-22 119.8 6.1 154 13-181 26-216 (221)
196 1n0u_A EF-2, elongation factor 99.7 6.8E-17 2.3E-21 136.1 10.9 121 5-132 9-164 (842)
197 3l82_B F-box only protein 4; T 99.7 5.7E-17 2E-21 113.6 7.6 176 4-181 3-225 (227)
198 2qag_C Septin-7; cell cycle, c 99.7 3.5E-17 1.2E-21 127.6 5.2 159 13-178 27-226 (418)
199 4a9a_A Ribosome-interacting GT 99.7 4.8E-15 1.7E-19 113.9 15.7 113 16-130 71-194 (376)
200 1jal_A YCHF protein; nucleotid 99.7 4.1E-15 1.4E-19 113.7 15.0 79 18-96 3-108 (363)
201 3zvr_A Dynamin-1; hydrolase, D 99.6 2.2E-15 7.6E-20 124.5 12.8 156 16-176 50-275 (772)
202 2p67_A LAO/AO transport system 99.6 1.1E-16 3.9E-21 122.2 4.8 153 14-178 53-260 (341)
203 1yrb_A ATP(GTP)binding protein 99.6 2.4E-16 8.2E-21 116.2 5.8 162 13-178 10-256 (262)
204 3j25_A Tetracycline resistance 99.6 6.3E-16 2.2E-20 126.8 7.2 158 19-181 4-241 (638)
205 3l2o_B F-box only protein 4; s 99.6 1.1E-15 3.7E-20 112.1 6.4 112 68-181 194-310 (312)
206 4fn5_A EF-G 1, elongation fact 99.6 5.2E-14 1.8E-18 116.9 15.5 111 18-133 14-152 (709)
207 2dby_A GTP-binding protein; GD 99.6 4.3E-14 1.5E-18 108.6 12.9 79 18-96 2-111 (368)
208 2hf9_A Probable hydrogenase ni 99.6 8E-17 2.7E-21 116.2 -2.5 151 14-179 35-224 (226)
209 2yv5_A YJEQ protein; hydrolase 99.6 4.7E-16 1.6E-20 116.9 1.3 112 71-193 66-181 (302)
210 2qm8_A GTPase/ATPase; G protei 99.5 1.1E-13 3.8E-18 105.4 10.2 153 14-178 52-260 (337)
211 2ohf_A Protein OLA1, GTP-bindi 99.3 2.5E-12 8.4E-17 99.3 8.2 83 15-97 20-129 (396)
212 3h2y_A GTPase family protein; 99.3 2E-13 6.7E-18 105.2 1.7 116 70-193 55-176 (368)
213 3ec1_A YQEH GTPase; atnos1, at 99.3 3.5E-13 1.2E-17 103.9 2.2 117 69-193 56-178 (369)
214 1puj_A YLQF, conserved hypothe 99.3 1.3E-12 4.5E-17 97.2 3.8 117 65-193 3-136 (282)
215 1ni3_A YCHF GTPase, YCHF GTP-b 99.1 6.6E-10 2.2E-14 85.9 10.1 81 16-96 19-127 (392)
216 2j37_W Signal recognition part 99.1 1.3E-09 4.5E-14 86.8 11.7 153 16-176 100-310 (504)
217 3ec1_A YQEH GTPase; atnos1, at 99.0 5.7E-11 2E-15 91.6 -0.1 111 17-133 162-289 (369)
218 2qag_B Septin-6, protein NEDD5 99.0 1.3E-09 4.4E-14 85.0 7.2 141 13-160 38-217 (427)
219 3cnl_A YLQF, putative uncharac 98.9 2.9E-11 9.9E-16 89.0 -2.9 111 68-193 4-115 (262)
220 3sop_A Neuronal-specific septi 98.9 1.2E-09 4E-14 80.8 5.6 114 17-135 2-157 (270)
221 1tq4_A IIGP1, interferon-induc 98.9 1.4E-08 4.9E-13 79.0 10.1 159 16-181 68-255 (413)
222 3h2y_A GTPase family protein; 98.9 6E-10 2.1E-14 85.8 1.9 113 17-135 160-290 (368)
223 3cnl_A YLQF, putative uncharac 98.8 1.8E-09 6.2E-14 79.4 3.3 55 18-73 100-156 (262)
224 1puj_A YLQF, conserved hypothe 98.7 6.5E-09 2.2E-13 77.2 4.2 58 14-72 117-176 (282)
225 1t9h_A YLOQ, probable GTPase E 98.7 1.1E-10 3.7E-15 87.5 -5.7 105 78-193 80-189 (307)
226 2rcn_A Probable GTPase ENGC; Y 98.6 1.4E-08 4.8E-13 77.5 3.1 101 81-193 127-231 (358)
227 3dm5_A SRP54, signal recogniti 98.5 5.3E-07 1.8E-11 70.6 10.1 111 16-133 99-254 (443)
228 1f5n_A Interferon-induced guan 98.5 2.2E-07 7.7E-12 75.3 6.5 59 14-72 35-102 (592)
229 3szr_A Interferon-induced GTP- 98.3 3.9E-07 1.3E-11 74.6 4.7 24 18-41 46-69 (608)
230 2v3c_C SRP54, signal recogniti 98.3 8.4E-07 2.9E-11 69.6 6.4 109 17-133 99-253 (432)
231 3kl4_A SRP54, signal recogniti 98.3 3.3E-06 1.1E-10 66.1 9.4 111 16-133 96-253 (433)
232 1j8m_F SRP54, signal recogniti 98.1 6.4E-06 2.2E-10 61.5 6.2 135 17-169 98-281 (297)
233 1bif_A 6-phosphofructo-2-kinas 98.0 7.1E-07 2.4E-11 70.9 -0.7 95 15-110 37-145 (469)
234 3q5d_A Atlastin-1; G protein, 97.9 2.6E-05 9E-10 61.3 6.3 27 14-40 64-90 (447)
235 1np6_A Molybdopterin-guanine d 97.8 0.0001 3.4E-09 50.6 7.7 108 18-131 7-126 (174)
236 1vma_A Cell division protein F 97.8 0.00029 9.8E-09 52.8 10.5 121 18-145 105-277 (306)
237 2xxa_A Signal recognition part 97.8 5.7E-05 1.9E-09 59.3 6.9 109 17-133 100-255 (433)
238 3e70_C DPA, signal recognition 97.7 5.4E-05 1.8E-09 57.3 6.2 137 15-168 127-309 (328)
239 2yhs_A FTSY, cell division pro 97.7 4E-05 1.4E-09 60.8 4.9 23 17-39 293-315 (503)
240 1ye8_A Protein THEP1, hypothet 97.5 5.2E-05 1.8E-09 52.3 3.1 23 18-40 1-23 (178)
241 2ffh_A Protein (FFH); SRP54, s 97.4 0.001 3.5E-08 52.0 9.4 68 59-133 179-252 (425)
242 4dzz_A Plasmid partitioning pr 97.4 0.0013 4.4E-08 45.8 9.1 69 60-132 75-144 (206)
243 1kgd_A CASK, peripheral plasma 97.3 0.00011 3.6E-09 50.7 2.8 22 19-40 7-28 (180)
244 3end_A Light-independent proto 97.3 0.0062 2.1E-07 45.3 12.5 82 60-145 156-238 (307)
245 1lvg_A Guanylate kinase, GMP k 97.3 0.00012 4.1E-09 51.2 2.8 21 19-39 6-26 (198)
246 3c8u_A Fructokinase; YP_612366 97.3 0.00015 5.3E-09 51.0 3.2 27 14-40 19-45 (208)
247 1zp6_A Hypothetical protein AT 97.2 0.00017 5.8E-09 49.9 2.9 24 17-40 9-32 (191)
248 3a00_A Guanylate kinase, GMP k 97.2 0.00017 5.7E-09 49.9 2.8 21 20-40 4-24 (186)
249 3ec2_A DNA replication protein 97.2 0.00019 6.7E-09 49.2 3.0 26 16-41 37-62 (180)
250 3tr0_A Guanylate kinase, GMP k 97.2 0.00018 6E-09 50.3 2.8 23 18-40 8-30 (205)
251 1znw_A Guanylate kinase, GMP k 97.2 0.00019 6.5E-09 50.5 2.8 23 19-41 22-44 (207)
252 4gp7_A Metallophosphoesterase; 97.2 0.00019 6.4E-09 49.0 2.7 21 19-39 11-31 (171)
253 1z6g_A Guanylate kinase; struc 97.1 0.00022 7.5E-09 50.7 2.8 23 18-40 24-46 (218)
254 1s96_A Guanylate kinase, GMP k 97.1 0.00022 7.6E-09 50.8 2.8 24 18-41 17-40 (219)
255 2bbw_A Adenylate kinase 4, AK4 97.1 0.0003 1E-08 50.8 3.5 23 16-38 26-48 (246)
256 1htw_A HI0065; nucleotide-bind 97.1 0.00027 9.4E-09 47.6 2.8 24 18-41 34-57 (158)
257 3cwq_A Para family chromosome 97.1 0.011 3.6E-07 41.6 11.1 67 60-132 67-134 (209)
258 3ney_A 55 kDa erythrocyte memb 97.1 0.00028 9.6E-09 49.3 2.8 26 15-40 17-42 (197)
259 3tif_A Uncharacterized ABC tra 97.1 0.00031 1.1E-08 50.6 3.0 24 19-42 33-56 (235)
260 2rcn_A Probable GTPase ENGC; Y 97.1 0.00031 1E-08 53.7 3.0 24 19-42 217-240 (358)
261 3tqc_A Pantothenate kinase; bi 97.1 0.00049 1.7E-08 51.8 4.1 30 10-39 85-114 (321)
262 1jbk_A CLPB protein; beta barr 97.0 0.0007 2.4E-08 46.3 4.6 36 5-40 31-66 (195)
263 3asz_A Uridine kinase; cytidin 97.0 0.00037 1.3E-08 49.0 3.2 25 15-39 4-28 (211)
264 3tau_A Guanylate kinase, GMP k 97.0 0.00031 1.1E-08 49.5 2.8 25 17-41 8-32 (208)
265 2pcj_A ABC transporter, lipopr 97.0 0.00035 1.2E-08 49.9 2.9 23 19-41 32-54 (224)
266 1u0l_A Probable GTPase ENGC; p 97.0 0.00084 2.9E-08 50.1 5.1 37 4-43 159-195 (301)
267 3lw7_A Adenylate kinase relate 97.0 0.00043 1.5E-08 46.8 3.2 20 18-37 2-21 (179)
268 2bdt_A BH3686; alpha-beta prot 97.0 0.00038 1.3E-08 48.1 2.8 21 19-39 4-24 (189)
269 2cdn_A Adenylate kinase; phosp 97.0 0.00062 2.1E-08 47.5 3.9 27 13-39 16-42 (201)
270 1kag_A SKI, shikimate kinase I 97.0 0.0004 1.4E-08 47.1 2.8 23 18-40 5-27 (173)
271 2onk_A Molybdate/tungstate ABC 97.0 0.00043 1.5E-08 50.0 3.0 23 19-41 26-48 (240)
272 1ex7_A Guanylate kinase; subst 97.0 0.00045 1.6E-08 47.8 3.0 21 20-40 4-24 (186)
273 2qor_A Guanylate kinase; phosp 97.0 0.00041 1.4E-08 48.6 2.8 25 16-40 11-35 (204)
274 1sgw_A Putative ABC transporte 97.0 0.00045 1.6E-08 49.0 3.0 23 19-41 37-59 (214)
275 2yv5_A YJEQ protein; hydrolase 97.0 0.0012 4.1E-08 49.3 5.4 35 4-42 155-189 (302)
276 2j41_A Guanylate kinase; GMP, 97.0 0.00056 1.9E-08 47.8 3.4 25 17-41 6-30 (207)
277 3gfo_A Cobalt import ATP-bindi 97.0 0.00045 1.5E-08 50.9 3.0 23 19-41 36-58 (275)
278 3kb2_A SPBC2 prophage-derived 97.0 0.00048 1.6E-08 46.6 3.0 21 19-39 3-23 (173)
279 1b0u_A Histidine permease; ABC 96.9 0.00045 1.6E-08 50.5 3.0 24 19-42 34-57 (262)
280 2i3b_A HCR-ntpase, human cance 96.9 0.00042 1.4E-08 48.2 2.6 22 19-40 3-24 (189)
281 1ly1_A Polynucleotide kinase; 96.9 0.00055 1.9E-08 46.6 3.2 22 18-39 3-24 (181)
282 1g6h_A High-affinity branched- 96.9 0.00048 1.6E-08 50.3 3.0 23 19-41 35-57 (257)
283 2cbz_A Multidrug resistance-as 96.9 0.00054 1.8E-08 49.4 3.2 23 19-41 33-55 (237)
284 3fb4_A Adenylate kinase; psych 96.9 0.00055 1.9E-08 48.3 3.2 22 18-39 1-22 (216)
285 4eun_A Thermoresistant glucoki 96.9 0.00046 1.6E-08 48.2 2.8 24 16-39 28-51 (200)
286 2if2_A Dephospho-COA kinase; a 96.9 0.00053 1.8E-08 47.9 3.0 22 18-39 2-23 (204)
287 2ff7_A Alpha-hemolysin translo 96.9 0.00057 1.9E-08 49.6 3.2 23 19-41 37-59 (247)
288 4g1u_C Hemin import ATP-bindin 96.9 0.00051 1.7E-08 50.4 3.0 23 19-41 39-61 (266)
289 1mv5_A LMRA, multidrug resista 96.9 0.00058 2E-08 49.4 3.2 23 19-41 30-52 (243)
290 3dl0_A Adenylate kinase; phosp 96.9 0.0006 2.1E-08 48.1 3.2 22 18-39 1-22 (216)
291 2pze_A Cystic fibrosis transme 96.9 0.00061 2.1E-08 48.8 3.2 24 19-42 36-59 (229)
292 2olj_A Amino acid ABC transpor 96.9 0.00055 1.9E-08 50.1 3.0 23 19-41 52-74 (263)
293 1ji0_A ABC transporter; ATP bi 96.9 0.00056 1.9E-08 49.4 3.0 23 19-41 34-56 (240)
294 2jaq_A Deoxyguanosine kinase; 96.9 0.0006 2E-08 47.5 3.1 22 18-39 1-22 (205)
295 1vpl_A ABC transporter, ATP-bi 96.9 0.00057 2E-08 49.8 3.0 23 19-41 43-65 (256)
296 1y63_A LMAJ004144AAA protein; 96.9 0.00084 2.9E-08 46.2 3.7 26 15-40 8-33 (184)
297 1knq_A Gluconate kinase; ALFA/ 96.9 0.0008 2.7E-08 45.8 3.6 23 17-39 8-30 (175)
298 2qi9_C Vitamin B12 import ATP- 96.9 0.00059 2E-08 49.5 3.0 23 19-41 28-50 (249)
299 1cke_A CK, MSSA, protein (cyti 96.9 0.00072 2.5E-08 48.0 3.4 23 17-39 5-27 (227)
300 1t9h_A YLOQ, probable GTPase E 96.9 0.0002 6.8E-09 53.6 0.5 25 18-42 174-198 (307)
301 3t61_A Gluconokinase; PSI-biol 96.9 0.00068 2.3E-08 47.3 3.2 23 17-39 18-40 (202)
302 2d2e_A SUFC protein; ABC-ATPas 96.9 0.00061 2.1E-08 49.5 3.0 22 19-40 31-52 (250)
303 3b85_A Phosphate starvation-in 96.9 0.00045 1.5E-08 48.8 2.3 22 19-40 24-45 (208)
304 2ghi_A Transport protein; mult 96.8 0.00069 2.4E-08 49.5 3.2 22 19-40 48-69 (260)
305 2zu0_C Probable ATP-dependent 96.8 0.00062 2.1E-08 49.9 3.0 22 19-40 48-69 (267)
306 2p65_A Hypothetical protein PF 96.8 0.00089 3E-08 45.6 3.7 36 5-40 31-66 (187)
307 2v9p_A Replication protein E1; 96.8 0.00064 2.2E-08 50.8 3.0 24 16-39 125-148 (305)
308 1jjv_A Dephospho-COA kinase; P 96.8 0.00074 2.5E-08 47.3 3.2 22 18-39 3-24 (206)
309 2ixe_A Antigen peptide transpo 96.8 0.00066 2.3E-08 49.9 3.0 23 19-41 47-69 (271)
310 2rhm_A Putative kinase; P-loop 96.8 0.00084 2.9E-08 46.3 3.4 24 16-39 4-27 (193)
311 2ihy_A ABC transporter, ATP-bi 96.8 0.00073 2.5E-08 49.9 3.2 23 19-41 49-71 (279)
312 2eyu_A Twitching motility prot 96.8 0.00064 2.2E-08 49.7 2.9 23 17-39 25-47 (261)
313 1sq5_A Pantothenate kinase; P- 96.8 0.0011 3.7E-08 49.7 4.1 25 15-39 78-102 (308)
314 2nq2_C Hypothetical ABC transp 96.8 0.00068 2.3E-08 49.3 2.9 24 19-42 33-56 (253)
315 3tlx_A Adenylate kinase 2; str 96.8 0.00083 2.9E-08 48.5 3.4 25 15-39 27-51 (243)
316 1odf_A YGR205W, hypothetical 3 96.8 0.0014 4.7E-08 48.7 4.6 27 13-39 27-53 (290)
317 2yz2_A Putative ABC transporte 96.8 0.00072 2.4E-08 49.6 3.0 23 19-41 35-57 (266)
318 2yvu_A Probable adenylyl-sulfa 96.8 0.00093 3.2E-08 46.0 3.5 27 14-40 10-36 (186)
319 3sr0_A Adenylate kinase; phosp 96.8 0.0008 2.7E-08 47.4 3.1 22 18-39 1-22 (206)
320 4a74_A DNA repair and recombin 96.8 0.00069 2.4E-08 48.1 2.8 21 19-39 27-47 (231)
321 3cm0_A Adenylate kinase; ATP-b 96.8 0.00087 3E-08 46.0 3.2 23 17-39 4-26 (186)
322 3vaa_A Shikimate kinase, SK; s 96.8 0.0008 2.7E-08 46.9 3.0 22 18-39 26-47 (199)
323 2ehv_A Hypothetical protein PH 96.8 0.00076 2.6E-08 48.5 3.0 20 19-38 32-51 (251)
324 1kht_A Adenylate kinase; phosp 96.8 0.00094 3.2E-08 45.9 3.3 23 17-39 3-25 (192)
325 1aky_A Adenylate kinase; ATP:A 96.8 0.00098 3.3E-08 47.2 3.4 24 16-39 3-26 (220)
326 2qt1_A Nicotinamide riboside k 96.8 0.001 3.6E-08 46.6 3.5 25 16-40 20-44 (207)
327 3aez_A Pantothenate kinase; tr 96.8 0.0009 3.1E-08 50.2 3.3 27 14-40 87-113 (312)
328 3uie_A Adenylyl-sulfate kinase 96.7 0.00079 2.7E-08 47.0 2.8 26 15-40 23-48 (200)
329 1nks_A Adenylate kinase; therm 96.7 0.00091 3.1E-08 46.0 3.1 21 19-39 3-23 (194)
330 1qhx_A CPT, protein (chloramph 96.7 0.00085 2.9E-08 45.7 2.9 22 18-39 4-25 (178)
331 1e4v_A Adenylate kinase; trans 96.7 0.00095 3.2E-08 47.1 3.2 22 18-39 1-22 (214)
332 3lnc_A Guanylate kinase, GMP k 96.7 0.0005 1.7E-08 49.2 1.7 22 19-40 29-51 (231)
333 2pjz_A Hypothetical protein ST 96.7 0.00094 3.2E-08 48.9 3.2 23 19-41 32-54 (263)
334 1rz3_A Hypothetical protein rb 96.7 0.0011 3.9E-08 46.3 3.5 25 15-39 20-44 (201)
335 1uf9_A TT1252 protein; P-loop, 96.7 0.001 3.5E-08 46.3 3.3 27 14-40 5-31 (203)
336 2jeo_A Uridine-cytidine kinase 96.7 0.0011 3.6E-08 47.9 3.4 25 15-39 23-47 (245)
337 2v54_A DTMP kinase, thymidylat 96.7 0.0013 4.4E-08 45.8 3.6 25 16-40 3-27 (204)
338 2plr_A DTMP kinase, probable t 96.7 0.0011 3.8E-08 46.4 3.2 23 17-39 4-26 (213)
339 1ukz_A Uridylate kinase; trans 96.7 0.0014 4.8E-08 45.7 3.7 26 14-39 12-37 (203)
340 2pt5_A Shikimate kinase, SK; a 96.7 0.0012 3.9E-08 44.6 3.2 22 18-39 1-22 (168)
341 2f1r_A Molybdopterin-guanine d 96.7 0.00047 1.6E-08 47.1 1.1 52 19-75 4-55 (171)
342 1lw7_A Transcriptional regulat 96.7 0.0008 2.7E-08 51.6 2.5 25 17-41 170-194 (365)
343 1tev_A UMP-CMP kinase; ploop, 96.7 0.0012 4.1E-08 45.5 3.2 23 17-39 3-25 (196)
344 2bbs_A Cystic fibrosis transme 96.6 0.0012 4E-08 49.1 3.2 23 19-41 66-88 (290)
345 1zak_A Adenylate kinase; ATP:A 96.6 0.0012 4.2E-08 46.7 3.2 24 16-39 4-27 (222)
346 1zd8_A GTP:AMP phosphotransfer 96.6 0.0013 4.4E-08 46.9 3.3 24 16-39 6-29 (227)
347 2c95_A Adenylate kinase 1; tra 96.6 0.0015 5E-08 45.2 3.5 24 16-39 8-31 (196)
348 2kjq_A DNAA-related protein; s 96.6 0.00079 2.7E-08 44.8 2.0 25 17-41 36-60 (149)
349 1nn5_A Similar to deoxythymidy 96.6 0.0015 5.1E-08 45.8 3.6 24 16-39 8-31 (215)
350 1gvn_B Zeta; postsegregational 96.6 0.0014 4.8E-08 48.6 3.5 24 16-39 32-55 (287)
351 3nh6_A ATP-binding cassette SU 96.6 0.00078 2.7E-08 50.4 2.1 22 19-40 82-103 (306)
352 3trf_A Shikimate kinase, SK; a 96.6 0.0014 4.7E-08 45.0 3.2 22 18-39 6-27 (185)
353 3n70_A Transport activator; si 96.6 0.0032 1.1E-07 41.5 4.8 27 15-41 22-48 (145)
354 2x8a_A Nuclear valosin-contain 96.6 0.0011 3.8E-08 48.7 2.8 21 20-40 47-67 (274)
355 3fvq_A Fe(3+) IONS import ATP- 96.6 0.0013 4.3E-08 50.4 3.0 24 19-42 32-55 (359)
356 2wwf_A Thymidilate kinase, put 96.6 0.0015 5.1E-08 45.8 3.2 24 16-39 9-32 (212)
357 3tui_C Methionine import ATP-b 96.6 0.0013 4.4E-08 50.4 3.0 23 19-41 56-78 (366)
358 1via_A Shikimate kinase; struc 96.6 0.0012 4.2E-08 44.9 2.6 21 19-39 6-26 (175)
359 2xb4_A Adenylate kinase; ATP-b 96.6 0.0015 5.2E-08 46.4 3.2 22 18-39 1-22 (223)
360 3be4_A Adenylate kinase; malar 96.5 0.0013 4.5E-08 46.5 2.8 24 16-39 4-27 (217)
361 2pbr_A DTMP kinase, thymidylat 96.5 0.0015 5.1E-08 45.0 3.1 21 19-39 2-22 (195)
362 2z0h_A DTMP kinase, thymidylat 96.5 0.0016 5.4E-08 45.0 3.1 22 19-40 2-23 (197)
363 1z47_A CYSA, putative ABC-tran 96.5 0.0015 5.1E-08 49.9 3.0 23 19-41 43-65 (355)
364 3jvv_A Twitching mobility prot 96.5 0.0015 5E-08 50.0 3.0 22 19-40 125-146 (356)
365 2vli_A Antibiotic resistance p 96.5 0.0012 4E-08 45.2 2.3 24 16-39 4-27 (183)
366 1xjc_A MOBB protein homolog; s 96.5 0.0018 6.3E-08 44.0 3.2 23 17-39 4-26 (169)
367 1ixz_A ATP-dependent metallopr 96.5 0.0014 4.9E-08 47.4 2.8 22 19-40 51-72 (254)
368 1vht_A Dephospho-COA kinase; s 96.5 0.0019 6.6E-08 45.6 3.4 24 16-39 3-26 (218)
369 3bos_A Putative DNA replicatio 96.5 0.0029 9.9E-08 45.0 4.4 24 16-39 51-74 (242)
370 3iij_A Coilin-interacting nucl 96.5 0.0019 6.5E-08 44.1 3.3 24 16-39 10-33 (180)
371 2pt7_A CAG-ALFA; ATPase, prote 96.5 0.0016 5.4E-08 49.3 3.0 23 19-41 173-195 (330)
372 2yyz_A Sugar ABC transporter, 96.5 0.0016 5.5E-08 49.8 3.0 23 19-41 31-53 (359)
373 3rlf_A Maltose/maltodextrin im 96.4 0.0017 5.7E-08 50.1 3.0 23 19-41 31-53 (381)
374 2it1_A 362AA long hypothetical 96.4 0.0017 5.7E-08 49.8 3.0 23 19-41 31-53 (362)
375 2bwj_A Adenylate kinase 5; pho 96.4 0.002 6.9E-08 44.6 3.3 23 17-39 12-34 (199)
376 2gza_A Type IV secretion syste 96.4 0.0016 5.3E-08 50.0 2.8 24 18-41 176-199 (361)
377 3b9q_A Chloroplast SRP recepto 96.4 0.0016 5.4E-08 48.7 2.8 22 18-39 101-122 (302)
378 2w58_A DNAI, primosome compone 96.4 0.0037 1.3E-07 43.5 4.5 23 18-40 55-77 (202)
379 2chg_A Replication factor C sm 96.4 0.0029 9.9E-08 44.2 4.0 22 19-40 40-61 (226)
380 1g29_1 MALK, maltose transport 96.4 0.0018 6.1E-08 49.8 3.0 24 19-42 31-54 (372)
381 1qf9_A UMP/CMP kinase, protein 96.4 0.0027 9.2E-08 43.6 3.7 23 17-39 6-28 (194)
382 1ak2_A Adenylate kinase isoenz 96.4 0.0024 8.4E-08 45.6 3.6 25 15-39 14-38 (233)
383 2f6r_A COA synthase, bifunctio 96.4 0.0024 8.1E-08 47.2 3.6 25 15-39 73-97 (281)
384 2vp4_A Deoxynucleoside kinase; 96.4 0.0016 5.5E-08 46.5 2.6 26 15-40 18-43 (230)
385 2ewv_A Twitching motility prot 96.4 0.0018 6.2E-08 49.8 3.0 23 17-39 136-158 (372)
386 1tue_A Replication protein E1; 96.4 0.0023 7.8E-08 44.9 3.2 21 19-39 60-80 (212)
387 1uj2_A Uridine-cytidine kinase 96.4 0.0022 7.6E-08 46.4 3.3 27 13-39 18-44 (252)
388 1zcb_A G alpha I/13; GTP-bindi 96.4 0.0023 7.8E-08 49.1 3.5 24 15-38 31-54 (362)
389 1v43_A Sugar-binding transport 96.4 0.0019 6.5E-08 49.6 3.0 23 19-41 39-61 (372)
390 4e22_A Cytidylate kinase; P-lo 96.4 0.0026 9E-08 46.1 3.6 23 16-38 26-48 (252)
391 3a4m_A L-seryl-tRNA(SEC) kinas 96.4 0.0023 7.9E-08 46.6 3.4 23 17-39 4-26 (260)
392 2p5t_B PEZT; postsegregational 96.4 0.0015 5.3E-08 47.3 2.4 25 15-39 30-54 (253)
393 1gtv_A TMK, thymidylate kinase 96.4 0.00082 2.8E-08 47.2 0.9 21 19-39 2-22 (214)
394 1rj9_A FTSY, signal recognitio 96.4 0.0027 9.2E-08 47.5 3.7 123 16-145 101-275 (304)
395 2ze6_A Isopentenyl transferase 96.4 0.0019 6.4E-08 46.9 2.8 21 19-39 3-23 (253)
396 2w0m_A SSO2452; RECA, SSPF, un 96.4 0.0019 6.6E-08 45.7 2.8 21 19-39 25-45 (235)
397 2iyv_A Shikimate kinase, SK; t 96.4 0.002 6.9E-08 44.1 2.8 22 18-39 3-24 (184)
398 2pez_A Bifunctional 3'-phospho 96.3 0.0026 8.8E-08 43.4 3.2 24 16-39 4-27 (179)
399 3h4m_A Proteasome-activating n 96.3 0.0041 1.4E-07 45.6 4.4 26 15-40 49-74 (285)
400 1iy2_A ATP-dependent metallopr 96.3 0.0021 7.2E-08 47.2 2.8 22 19-40 75-96 (278)
401 1in4_A RUVB, holliday junction 96.3 0.0021 7.2E-08 48.6 2.8 23 18-40 52-74 (334)
402 1e6c_A Shikimate kinase; phosp 96.3 0.0024 8.3E-08 43.1 2.9 21 19-39 4-24 (173)
403 3r20_A Cytidylate kinase; stru 96.3 0.0028 9.7E-08 45.4 3.3 24 16-39 8-31 (233)
404 3gd7_A Fusion complex of cysti 96.3 0.0024 8.1E-08 49.4 3.0 22 19-40 49-70 (390)
405 3d31_A Sulfate/molybdate ABC t 96.3 0.0015 5.3E-08 49.7 1.9 23 19-41 28-50 (348)
406 2oap_1 GSPE-2, type II secreti 96.2 0.0025 8.4E-08 51.1 3.1 24 18-41 261-284 (511)
407 1zuh_A Shikimate kinase; alpha 96.2 0.003 1E-07 42.6 3.1 21 19-39 9-29 (168)
408 1cr0_A DNA primase/helicase; R 96.2 0.0023 7.9E-08 47.4 2.8 21 19-39 37-57 (296)
409 1d2n_A N-ethylmaleimide-sensit 96.2 0.0043 1.5E-07 45.4 4.2 27 14-40 61-87 (272)
410 2ga8_A Hypothetical 39.9 kDa p 96.2 0.005 1.7E-07 46.9 4.6 26 14-39 21-46 (359)
411 2obl_A ESCN; ATPase, hydrolase 96.2 0.0025 8.6E-08 48.5 3.0 26 17-42 71-96 (347)
412 1p9r_A General secretion pathw 96.2 0.0023 7.9E-08 50.0 2.8 23 18-40 168-190 (418)
413 3umf_A Adenylate kinase; rossm 96.2 0.0026 9E-08 45.1 2.8 24 16-39 27-51 (217)
414 3kta_A Chromosome segregation 96.2 0.0028 9.6E-08 43.3 2.9 21 19-39 28-48 (182)
415 3t15_A Ribulose bisphosphate c 96.2 0.0032 1.1E-07 46.7 3.3 25 16-40 35-59 (293)
416 4ido_A Atlastin-1; GTPase, GTP 96.2 0.016 5.3E-07 45.6 7.1 35 4-38 52-88 (457)
417 1nij_A Hypothetical protein YJ 96.2 0.0022 7.5E-08 48.2 2.3 24 18-41 5-28 (318)
418 2og2_A Putative signal recogni 96.2 0.0027 9.1E-08 48.6 2.8 23 17-39 157-179 (359)
419 2cvh_A DNA repair and recombin 96.2 0.0029 1E-07 44.4 2.8 21 19-39 22-42 (220)
420 1oxx_K GLCV, glucose, ABC tran 96.1 0.0015 5E-08 49.9 1.2 24 19-42 33-56 (353)
421 2grj_A Dephospho-COA kinase; T 96.1 0.0037 1.3E-07 43.4 3.1 25 16-40 11-35 (192)
422 1sxj_E Activator 1 40 kDa subu 96.1 0.0046 1.6E-07 46.8 3.9 22 18-39 37-58 (354)
423 1n0w_A DNA repair protein RAD5 96.1 0.0031 1.1E-07 45.0 2.8 23 18-40 25-47 (243)
424 2npi_A Protein CLP1; CLP1-PCF1 96.1 0.0027 9.3E-08 50.2 2.6 25 16-40 137-161 (460)
425 1lv7_A FTSH; alpha/beta domain 96.1 0.0038 1.3E-07 45.2 3.2 23 17-39 45-67 (257)
426 1m7g_A Adenylylsulfate kinase; 96.1 0.0042 1.4E-07 43.6 3.3 25 15-39 23-47 (211)
427 4eaq_A DTMP kinase, thymidylat 96.1 0.0047 1.6E-07 44.1 3.6 25 16-40 25-49 (229)
428 3nwj_A ATSK2; P loop, shikimat 96.0 0.0033 1.1E-07 45.6 2.7 23 17-39 48-70 (250)
429 1f2t_A RAD50 ABC-ATPase; DNA d 96.0 0.0042 1.4E-07 41.3 3.0 20 19-38 25-44 (149)
430 3pxg_A Negative regulator of g 96.0 0.0061 2.1E-07 48.3 4.1 36 5-40 189-224 (468)
431 1sxj_D Activator 1 41 kDa subu 96.0 0.0075 2.6E-07 45.6 4.4 23 18-40 59-81 (353)
432 2qgz_A Helicase loader, putati 95.9 0.0084 2.9E-07 44.8 4.6 24 17-40 152-175 (308)
433 1p5z_B DCK, deoxycytidine kina 95.9 0.0036 1.2E-07 45.6 2.5 28 13-40 20-47 (263)
434 1q3t_A Cytidylate kinase; nucl 95.9 0.0055 1.9E-07 43.8 3.5 25 15-39 14-38 (236)
435 1sxj_C Activator 1 40 kDa subu 95.9 0.0063 2.2E-07 46.0 3.9 23 18-40 47-69 (340)
436 1yqt_A RNAse L inhibitor; ATP- 95.9 0.0046 1.6E-07 49.9 3.2 24 19-42 49-72 (538)
437 3ozx_A RNAse L inhibitor; ATP 95.9 0.0042 1.4E-07 50.1 3.0 25 18-42 26-50 (538)
438 1ltq_A Polynucleotide kinase; 95.9 0.0051 1.7E-07 45.6 3.2 22 18-39 3-24 (301)
439 2dpy_A FLII, flagellum-specifi 95.9 0.0044 1.5E-07 48.7 3.0 26 17-42 157-182 (438)
440 1svm_A Large T antigen; AAA+ f 95.9 0.0042 1.5E-07 47.8 2.8 24 16-39 168-191 (377)
441 3cf0_A Transitional endoplasmi 95.9 0.008 2.7E-07 44.7 4.3 25 16-40 48-72 (301)
442 3b60_A Lipid A export ATP-bind 95.9 0.0049 1.7E-07 50.3 3.2 23 19-41 371-393 (582)
443 3te6_A Regulatory protein SIR3 95.8 0.004 1.4E-07 46.8 2.4 30 12-41 40-69 (318)
444 1njg_A DNA polymerase III subu 95.8 0.0049 1.7E-07 43.6 2.8 21 19-39 47-67 (250)
445 3euj_A Chromosome partition pr 95.8 0.0046 1.6E-07 49.1 2.8 22 18-39 30-51 (483)
446 1nlf_A Regulatory protein REPA 95.8 0.0049 1.7E-07 45.3 2.8 21 19-39 32-52 (279)
447 2qz4_A Paraplegin; AAA+, SPG7, 95.8 0.0071 2.4E-07 43.7 3.6 24 16-39 38-61 (262)
448 3b9p_A CG5977-PA, isoform A; A 95.8 0.0049 1.7E-07 45.6 2.7 24 17-40 54-77 (297)
449 3b5x_A Lipid A export ATP-bind 95.8 0.0055 1.9E-07 49.9 3.1 23 19-41 371-393 (582)
450 3j16_B RLI1P; ribosome recycli 95.7 0.0055 1.9E-07 50.2 3.0 24 19-42 105-128 (608)
451 3qf7_A RAD50; ABC-ATPase, ATPa 95.7 0.0059 2E-07 46.8 3.0 20 19-38 25-44 (365)
452 3uk6_A RUVB-like 2; hexameric 95.7 0.01 3.4E-07 45.2 4.3 22 18-39 71-92 (368)
453 4b4t_M 26S protease regulatory 95.7 0.01 3.5E-07 46.5 4.3 31 9-39 207-237 (434)
454 3syl_A Protein CBBX; photosynt 95.7 0.01 3.5E-07 44.0 4.2 26 14-39 64-89 (309)
455 3gmt_A Adenylate kinase; ssgci 95.7 0.0071 2.4E-07 43.2 3.1 24 16-39 7-30 (230)
456 1a7j_A Phosphoribulokinase; tr 95.7 0.0039 1.3E-07 46.2 1.8 24 16-39 4-27 (290)
457 2yl4_A ATP-binding cassette SU 95.7 0.005 1.7E-07 50.3 2.5 23 19-41 372-394 (595)
458 3ake_A Cytidylate kinase; CMP 95.6 0.0074 2.5E-07 42.0 3.0 21 19-39 4-24 (208)
459 3zvl_A Bifunctional polynucleo 95.6 0.0095 3.3E-07 46.5 3.8 25 16-40 257-281 (416)
460 3bk7_A ABC transporter ATP-bin 95.6 0.0072 2.5E-07 49.5 3.2 24 19-42 119-142 (607)
461 1l8q_A Chromosomal replication 95.6 0.0065 2.2E-07 45.6 2.8 24 17-40 37-60 (324)
462 3ozx_A RNAse L inhibitor; ATP 95.6 0.0067 2.3E-07 48.9 3.0 24 19-42 296-319 (538)
463 2px0_A Flagellar biosynthesis 95.6 0.0067 2.3E-07 45.1 2.8 111 16-133 104-254 (296)
464 3qf4_B Uncharacterized ABC tra 95.6 0.0059 2E-07 50.0 2.7 23 19-41 383-405 (598)
465 2dr3_A UPF0273 protein PH0284; 95.6 0.0074 2.5E-07 43.1 2.9 21 19-39 25-45 (247)
466 4a82_A Cystic fibrosis transme 95.6 0.005 1.7E-07 50.2 2.2 22 19-40 369-390 (578)
467 2qby_A CDC6 homolog 1, cell di 95.6 0.011 3.8E-07 45.0 4.0 26 15-40 43-68 (386)
468 4b4t_L 26S protease subunit RP 95.5 0.013 4.3E-07 46.0 4.3 31 9-39 207-237 (437)
469 1yqt_A RNAse L inhibitor; ATP- 95.5 0.0079 2.7E-07 48.5 3.2 24 19-42 314-337 (538)
470 3co5_A Putative two-component 95.5 0.0061 2.1E-07 40.1 2.1 25 16-40 26-50 (143)
471 4b4t_K 26S protease regulatory 95.5 0.013 4.5E-07 45.8 4.3 24 16-39 205-228 (428)
472 2ocp_A DGK, deoxyguanosine kin 95.5 0.0089 3.1E-07 42.8 3.1 24 17-40 2-25 (241)
473 3qf4_A ABC transporter, ATP-bi 95.5 0.0066 2.3E-07 49.5 2.6 22 19-40 371-392 (587)
474 1pzn_A RAD51, DNA repair and r 95.5 0.0076 2.6E-07 45.9 2.8 23 19-41 133-155 (349)
475 1fnn_A CDC6P, cell division co 95.5 0.014 4.8E-07 44.6 4.3 22 19-40 46-67 (389)
476 3bk7_A ABC transporter ATP-bin 95.4 0.0091 3.1E-07 48.9 3.2 24 19-42 384-407 (607)
477 3uc9_A Increased recombination 95.4 0.059 2E-06 38.4 7.0 28 14-41 26-53 (233)
478 4b4t_J 26S protease regulatory 95.4 0.014 4.7E-07 45.3 3.9 31 9-39 174-204 (405)
479 1ofh_A ATP-dependent HSL prote 95.4 0.0089 3E-07 44.2 2.8 24 16-39 49-72 (310)
480 2qmh_A HPR kinase/phosphorylas 95.3 0.011 3.7E-07 41.3 2.9 24 18-41 35-58 (205)
481 1xwi_A SKD1 protein; VPS4B, AA 95.3 0.0093 3.2E-07 44.8 2.7 23 18-40 46-68 (322)
482 3j16_B RLI1P; ribosome recycli 95.3 0.0098 3.3E-07 48.7 3.0 24 20-43 381-404 (608)
483 3qks_A DNA double-strand break 95.3 0.011 3.8E-07 41.3 3.0 20 19-38 25-44 (203)
484 2h92_A Cytidylate kinase; ross 95.3 0.01 3.6E-07 41.7 2.8 23 17-39 3-25 (219)
485 2r62_A Cell division protease 95.3 0.0065 2.2E-07 44.2 1.8 22 18-39 45-66 (268)
486 1azs_C GS-alpha; complex (lyas 95.2 0.013 4.6E-07 45.4 3.5 25 14-38 37-61 (402)
487 4fcw_A Chaperone protein CLPB; 95.2 0.01 3.4E-07 44.1 2.7 23 18-40 48-70 (311)
488 3pxi_A Negative regulator of g 95.2 0.016 5.5E-07 48.7 4.1 36 5-40 189-224 (758)
489 2chq_A Replication factor C sm 95.2 0.019 6.6E-07 42.5 4.2 25 16-40 37-61 (319)
490 1r6b_X CLPA protein; AAA+, N-t 95.2 0.02 6.7E-07 48.2 4.6 36 5-40 195-230 (758)
491 3eie_A Vacuolar protein sortin 95.2 0.011 3.7E-07 44.4 2.7 24 17-40 51-74 (322)
492 4b4t_I 26S protease regulatory 95.1 0.021 7.3E-07 44.6 4.3 31 9-39 208-238 (437)
493 1c9k_A COBU, adenosylcobinamid 95.1 0.015 5.1E-07 39.9 3.1 21 20-40 2-22 (180)
494 2qby_B CDC6 homolog 3, cell di 95.1 0.024 8.2E-07 43.3 4.6 25 16-40 44-68 (384)
495 1u0j_A DNA replication protein 95.1 0.021 7.2E-07 41.7 4.0 21 19-39 106-126 (267)
496 1sxj_B Activator 1 37 kDa subu 95.1 0.021 7.1E-07 42.5 4.0 23 18-40 43-65 (323)
497 3pvs_A Replication-associated 95.0 0.023 7.9E-07 44.8 4.4 23 18-40 51-73 (447)
498 3crm_A TRNA delta(2)-isopenten 95.0 0.014 4.8E-07 43.9 3.0 22 18-39 6-27 (323)
499 1iqp_A RFCS; clamp loader, ext 95.0 0.018 6.1E-07 42.9 3.6 23 18-40 47-69 (327)
500 3ea0_A ATPase, para family; al 95.0 0.38 1.3E-05 34.0 10.5 82 60-145 118-199 (245)
No 1
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=3.6e-38 Score=222.41 Aligned_cols=180 Identities=46% Similarity=0.814 Sum_probs=154.6
Q ss_pred CchhHHHHhhhhcCCCccEEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEEEEEcCEEEEEEecCCCCCCHHhHHh
Q 029446 1 MGQAFRKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRH 80 (193)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~ 80 (193)
||..++++++ +...+.++|+++|.+|+|||||++++.++.+..+.+|.+.+...+..++..+.+|||||+++++..+..
T Consensus 1 m~~~~~~~~~-~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 79 (187)
T 1zj6_A 1 MGILFTRIWR-LFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNT 79 (187)
T ss_dssp -CHHHHHHHH-HHTTSCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSCEEEEETTEEEEEEECCC----CGGGHH
T ss_pred CchHHHHHHH-hcCCCccEEEEECCCCCCHHHHHHHHhcCCCCcCcCCCccceEEEEECCEEEEEEECCCCHhHHHHHHH
Confidence 8888999988 777899999999999999999999999888877788988888888888999999999999999999999
Q ss_pred hhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEecc
Q 029446 81 YFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCA 160 (193)
Q Consensus 81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (193)
+++++|++++|+|++++++++.+..|+..+.......+.|+++|+||+|+.+....+++.+.+....++..++++++|||
T Consensus 80 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa 159 (187)
T 1zj6_A 80 YYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCA 159 (187)
T ss_dssp HHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBT
T ss_pred HhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHHHHHHhChhhhcCCCcEEEEccC
Confidence 99999999999999999999999999999877543468999999999999887667777777765555667789999999
Q ss_pred ccCCCHHHHHHHHHHHHHhhh
Q 029446 161 LKGDGLYEGLDWLASTLKEMR 181 (193)
Q Consensus 161 ~~~~gi~~~~~~l~~~~~~~~ 181 (193)
++|+|+++++++|.+.+....
T Consensus 160 ~~g~gi~~l~~~l~~~~~~~~ 180 (187)
T 1zj6_A 160 LTGEGLCQGLEWMMSRLKIRL 180 (187)
T ss_dssp TTTBTHHHHHHHHHHHHCC--
T ss_pred CCCcCHHHHHHHHHHHHHHHh
Confidence 999999999999999885444
No 2
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=8.6e-38 Score=219.48 Aligned_cols=181 Identities=50% Similarity=0.962 Sum_probs=158.4
Q ss_pred CchhHHHHhhhhcC-CCccEEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEEEEEcCEEEEEEecCCCCCCHHhHH
Q 029446 1 MGQAFRKLFDVFFG-NSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWR 79 (193)
Q Consensus 1 ~~~~~~~~~~~~~~-~~~~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~ 79 (193)
||..+.++++.+.. .+.++|+++|++|+|||||++++.++.+..+.+|.+.....+.+.+..+.+||+||+++++..+.
T Consensus 1 mg~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 80 (183)
T 1moz_A 1 MGNIFSSMFDKLWGSNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWR 80 (183)
T ss_dssp -CHHHHHHHGGGTTCSSCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCCEEEEEETTEEEEEEEEC----CCTTGG
T ss_pred CchHHHHHHHHhcCCCCccEEEEECCCCCCHHHHHHHHhcCCcCccCCcCccceEEEEECCEEEEEEECCCCHhHHHHHH
Confidence 88889999998877 89999999999999999999999988887778899988888888889999999999999999999
Q ss_pred hhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEec
Q 029446 80 HYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTC 159 (193)
Q Consensus 80 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (193)
.+++++|++++|+|++++.+++.+..|+..+.......+.|+++|+||+|+.+....+++.+.++.......+++++++|
T Consensus 81 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~S 160 (183)
T 1moz_A 81 CYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASS 160 (183)
T ss_dssp GTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEEB
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEEcc
Confidence 99999999999999999999999999999987764457899999999999988777778888777666666788999999
Q ss_pred cccCCCHHHHHHHHHHHHHhhh
Q 029446 160 ALKGDGLYEGLDWLASTLKEMR 181 (193)
Q Consensus 160 a~~~~gi~~~~~~l~~~~~~~~ 181 (193)
|++|+|+++++++|.+.+.+++
T Consensus 161 a~~~~gi~~l~~~l~~~~~~~q 182 (183)
T 1moz_A 161 AIKGEGITEGLDWLIDVIKEEQ 182 (183)
T ss_dssp GGGTBTHHHHHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHhcc
Confidence 9999999999999999987654
No 3
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=100.00 E-value=1.3e-37 Score=219.81 Aligned_cols=181 Identities=49% Similarity=0.906 Sum_probs=157.9
Q ss_pred CchhHHHHhh--hhcC-CCccEEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEEEEEcCEEEEEEecCCCCCCHHh
Q 029446 1 MGQAFRKLFD--VFFG-NSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPL 77 (193)
Q Consensus 1 ~~~~~~~~~~--~~~~-~~~~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~ 77 (193)
||..+.++++ +... ++.++|+++|++|+|||||++++.++.+..+.||.+.....+......+.+|||||+++++..
T Consensus 3 m~~~~~~~~~~l~~f~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~ 82 (189)
T 2x77_A 3 MGAWLASLKQTLGLLPADRKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVNLETLQYKNISFEVWDLGGQTGVRPY 82 (189)
T ss_dssp ---CCSCHHHHHHTSCTTSCEEEEEEEETTSSHHHHHHHTCCSCCEEECSSTTCCEEEEEETTEEEEEEEECCSSSSCCC
T ss_pred hHHHHHHHHHHhhhccCCCceEEEEECCCCCCHHHHHHHHHcCCCCCcCCCCceEEEEEEECCEEEEEEECCCCHhHHHH
Confidence 6656666666 5555 789999999999999999999999988877788999888888888999999999999999999
Q ss_pred HHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEE
Q 029446 78 WRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQG 157 (193)
Q Consensus 78 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (193)
+..+++++|++++|+|++++++++....++..+.......+.|+++|+||+|+.+....+++.+.+....++..++++++
T Consensus 83 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (189)
T 2x77_A 83 WRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVK 162 (189)
T ss_dssp CSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEE
T ss_pred HHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHhChhhccCCceEEEE
Confidence 99999999999999999999999999999999887655578999999999999887777788887776666777889999
Q ss_pred eccccCCCHHHHHHHHHHHHHhhh
Q 029446 158 TCALKGDGLYEGLDWLASTLKEMR 181 (193)
Q Consensus 158 ~Sa~~~~gi~~~~~~l~~~~~~~~ 181 (193)
|||++++|+++++++|.+.+.++.
T Consensus 163 ~Sa~~~~gi~~l~~~l~~~i~~~~ 186 (189)
T 2x77_A 163 SSSKTGDGLVEGMDWLVERLREQG 186 (189)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHHTC
T ss_pred ccCCCccCHHHHHHHHHHHHHhcc
Confidence 999999999999999999987654
No 4
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=100.00 E-value=4.6e-37 Score=217.77 Aligned_cols=173 Identities=59% Similarity=1.083 Sum_probs=150.2
Q ss_pred HHhhhhcCCCccEEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEEEEEcCEEEEEEecCCCCCCHHhHHhhhcCCC
Q 029446 7 KLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTD 86 (193)
Q Consensus 7 ~~~~~~~~~~~~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d 86 (193)
.++++....+.++|+++|++|+|||||++++.++.+..+.||.+.....+......+.+||+||+++++..+..+++++|
T Consensus 19 ~~~~~~~~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 98 (192)
T 2b6h_A 19 SLFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQ 98 (192)
T ss_dssp CGGGGTTTTSCEEEEEEESTTSSHHHHHHHHCSSCCEEEEEETTEEEEEEEETTEEEEEEECC-----CTTHHHHHHTCC
T ss_pred HHHHHhccCCccEEEEECCCCCCHHHHHHHHHhCCccccCCcCceeEEEEEECCEEEEEEECCCCHhHHHHHHHHhccCC
Confidence 45677777889999999999999999999999988887788999888888888999999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCCH
Q 029446 87 GLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGL 166 (193)
Q Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 166 (193)
++++|+|++++.+++.+..|+..+.......+.|+++|+||+|+.+....+++.+.++....+..++++++|||++|.|+
T Consensus 99 ~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi 178 (192)
T 2b6h_A 99 GLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGL 178 (192)
T ss_dssp EEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEECcCCCcCCH
Confidence 99999999999999999999999877544568999999999999887777888888877666777889999999999999
Q ss_pred HHHHHHHHHHHHh
Q 029446 167 YEGLDWLASTLKE 179 (193)
Q Consensus 167 ~~~~~~l~~~~~~ 179 (193)
++++++|.+.+.+
T Consensus 179 ~~l~~~l~~~i~~ 191 (192)
T 2b6h_A 179 YDGLDWLSHELSK 191 (192)
T ss_dssp HHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988753
No 5
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=100.00 E-value=1e-36 Score=214.68 Aligned_cols=178 Identities=40% Similarity=0.782 Sum_probs=148.2
Q ss_pred CchhHHHHhhhhcC-CCccEEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEEEEEcCEEEEEEecCCCCCCHHhHH
Q 029446 1 MGQAFRKLFDVFFG-NSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWR 79 (193)
Q Consensus 1 ~~~~~~~~~~~~~~-~~~~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~ 79 (193)
|| .+. ++.+... .+.++|+++|++|+|||||++++.++....+.||.+.....+..+...+.+|||||++++...+.
T Consensus 3 mg-~~~-~~~~~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~ 80 (186)
T 1ksh_A 3 MG-LLT-ILKKMKQKERELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWR 80 (186)
T ss_dssp ----------------CCEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSSEEEEEEEETTEEEEEEEECCSHHHHTTGG
T ss_pred cc-hhH-HHHhhcccCCeeEEEEECCCCCCHHHHHHHHhcCCCCcccccCccceEEEEECCEEEEEEECCCCHhHHHHHH
Confidence 45 443 4444444 68899999999999999999999998855778899988888888899999999999999999999
Q ss_pred hhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEec
Q 029446 80 HYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTC 159 (193)
Q Consensus 80 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (193)
.+++++|++++|+|++++.+++++..|+..+.......+.|+++|+||+|+.+....+++.+.+.....+..+++++++|
T Consensus 81 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 160 (186)
T 1ksh_A 81 NYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCS 160 (186)
T ss_dssp GGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECC
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCHHHHHHHhChhhccCCceEEEEee
Confidence 99999999999999999999999999999987754446899999999999988777777777776655566788999999
Q ss_pred cccCCCHHHHHHHHHHHHHhh
Q 029446 160 ALKGDGLYEGLDWLASTLKEM 180 (193)
Q Consensus 160 a~~~~gi~~~~~~l~~~~~~~ 180 (193)
|++|+|+++++++|.+.+.++
T Consensus 161 a~~~~gi~~l~~~l~~~i~~~ 181 (186)
T 1ksh_A 161 AVTGEDLLPGIDWLLDDISSR 181 (186)
T ss_dssp TTTCTTHHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHhc
Confidence 999999999999999998765
No 6
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=100.00 E-value=1.8e-36 Score=212.75 Aligned_cols=166 Identities=42% Similarity=0.814 Sum_probs=146.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEEEEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEEC
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDS 94 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~ 94 (193)
.+.++|+++|++|+|||||++++.+..+..+.||.+.+...+..+...+.+||+||++.++..+..+++++|++++|+|+
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~ 93 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDS 93 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEEEEEEETTEEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEET
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCeEEEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEEC
Confidence 67899999999999999999999998877778899988888888899999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHHHHH
Q 029446 95 LDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLA 174 (193)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~ 174 (193)
+++.+++.+..|+..++......+.|+++|+||+|+.+....+++.+.++...+...++++++|||++|+|+++++++|.
T Consensus 94 ~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~ 173 (181)
T 1fzq_A 94 ADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVC 173 (181)
T ss_dssp TCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCHHHHHHHhCchhccCCceEEEEccCCCCCCHHHHHHHHH
Confidence 99999999999998887654446799999999999988766777777776655566778999999999999999999999
Q ss_pred HHHHhh
Q 029446 175 STLKEM 180 (193)
Q Consensus 175 ~~~~~~ 180 (193)
+.+.++
T Consensus 174 ~~~~~~ 179 (181)
T 1fzq_A 174 KNVNAK 179 (181)
T ss_dssp HTC---
T ss_pred HHHHhc
Confidence 887543
No 7
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=100.00 E-value=5.9e-36 Score=207.74 Aligned_cols=166 Identities=56% Similarity=0.981 Sum_probs=150.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEEEEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEEC
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDS 94 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~ 94 (193)
.+.++|+++|++|+|||||++++.++.+..+.||.+.....+.+....+.+|||||++.+...+..+++++|++++|+|+
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~ 84 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDS 84 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEEEEEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEET
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCcCCcCccceEEEEECCEEEEEEECCCChhhhHHHHHHhccCCEEEEEEEC
Confidence 46799999999999999999999999888888899988888888999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHHHHH
Q 029446 95 LDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLA 174 (193)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~ 174 (193)
+++.+++....|+..+.......+.|+++|+||+|+.+....+++.+.+....++..+++++++||++|+|+++++++|.
T Consensus 85 ~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 164 (171)
T 1upt_A 85 CDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLV 164 (171)
T ss_dssp TCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCchhccCCceEEEECcCCCCcCHHHHHHHHH
Confidence 99999999999999887754446899999999999988777778888877666677888999999999999999999999
Q ss_pred HHHHhh
Q 029446 175 STLKEM 180 (193)
Q Consensus 175 ~~~~~~ 180 (193)
+.+.++
T Consensus 165 ~~i~~~ 170 (171)
T 1upt_A 165 ETLKSR 170 (171)
T ss_dssp HHHHTC
T ss_pred HHHhhc
Confidence 988654
No 8
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=100.00 E-value=3.3e-36 Score=207.77 Aligned_cols=163 Identities=61% Similarity=1.124 Sum_probs=144.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEEEEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCCh
Q 029446 18 MRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDR 97 (193)
Q Consensus 18 ~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~ 97 (193)
+||+++|++|+|||||++++.++.+..+.||.+.....+......+.+||+||+++++..+..+++++|++++|+|++++
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 80 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 80 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCCEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCG
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCcccCcCceeEEEEEECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEECCCH
Confidence 58999999999999999999998888778899888888888889999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHHHHHHHH
Q 029446 98 ERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTL 177 (193)
Q Consensus 98 ~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~ 177 (193)
.+++....|+..+.......+.|+++|+||+|+.+....+++.+.++...++..++++++|||++|.|+++++++|.+.+
T Consensus 81 ~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 160 (164)
T 1r8s_A 81 ERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 160 (164)
T ss_dssp GGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHHHHHHHHH
Confidence 99999999999887754456899999999999988767778888777666677788999999999999999999999987
Q ss_pred Hhh
Q 029446 178 KEM 180 (193)
Q Consensus 178 ~~~ 180 (193)
.++
T Consensus 161 ~~~ 163 (164)
T 1r8s_A 161 RNQ 163 (164)
T ss_dssp ---
T ss_pred hhc
Confidence 543
No 9
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=100.00 E-value=1.3e-37 Score=223.95 Aligned_cols=161 Identities=19% Similarity=0.281 Sum_probs=123.3
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEEEE--EE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEE
Q 029446 14 GNSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVEKV--QY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGL 88 (193)
Q Consensus 14 ~~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~~--~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 88 (193)
+.+.|||+|+|++|||||||+++|..+.+. .+.||++.++... .. ..+.+.||||+|+++|+.+++.++++++++
T Consensus 10 P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ 89 (216)
T 4dkx_A 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAA 89 (216)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEE
T ss_pred CCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEE
Confidence 457899999999999999999999999887 4678888775432 22 457899999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcCCCCceEEEEeccccCCCH
Q 029446 89 IYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGL 166 (193)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 166 (193)
++|||++++.+|+++..|+..+.... ..+.|+|||+||+|+.+.. ..++.. .+ ++..+++|++|||++|+||
T Consensus 90 ilv~di~~~~Sf~~i~~~~~~i~~~~-~~~~piilVgNK~Dl~~~r~V~~~e~~-~~----a~~~~~~~~e~SAktg~nV 163 (216)
T 4dkx_A 90 VVVYDITNVNSFQQTTKWIDDVRTER-GSDVIIMLVGNKTDLADKRQVSIEEGE-RK----AKELNVMFIETSAKAGYNV 163 (216)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHH-TTSSEEEEEEECTTCGGGCCSCHHHHH-HH----HHHHTCEEEEEBTTTTBSH
T ss_pred EEEeecchhHHHHHHHHHHHHHHHhc-CCCCeEEEEeeccchHhcCcccHHHHh-hH----HHHhCCeeEEEeCCCCcCH
Confidence 99999999999999999999987643 3679999999999987642 222221 11 2334568999999999999
Q ss_pred HHHHHHHHHHHHhh
Q 029446 167 YEGLDWLASTLKEM 180 (193)
Q Consensus 167 ~~~~~~l~~~~~~~ 180 (193)
+++|+.|++.+...
T Consensus 164 ~e~F~~i~~~i~~~ 177 (216)
T 4dkx_A 164 KQLFRRVAAALPGM 177 (216)
T ss_dssp HHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999988644
No 10
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=100.00 E-value=2.7e-35 Score=208.35 Aligned_cols=164 Identities=29% Similarity=0.524 Sum_probs=140.4
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEEEEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEE
Q 029446 13 FGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVV 92 (193)
Q Consensus 13 ~~~~~~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (193)
...+.++|+++|++|+|||||++++.++.+..+.+|.+.+...+..++..+.+|||||+++++..+..+++++|++++|+
T Consensus 19 ~~~~~~ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 98 (190)
T 1m2o_B 19 LWNKHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLV 98 (190)
T ss_dssp -----CEEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETTEEEEEEECCCSGGGTTSGGGGCTTCCEEEEEE
T ss_pred ccCCccEEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEE
Confidence 34567899999999999999999999998888888999988888888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCc-------CCCCceEEEEeccccCCC
Q 029446 93 DSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFD-------LKNRKWHIQGTCALKGDG 165 (193)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~Sa~~~~g 165 (193)
|++++.+++++..|+..+.......+.|+++|+||+|+.+....+++.+.+.... .+..++++++|||++|+|
T Consensus 99 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g 178 (190)
T 1m2o_B 99 DAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNG 178 (190)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBTTTTBS
T ss_pred ECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCCCHHHHHHHhCCccccccccccccceEEEEEeECCcCCC
Confidence 9999999999999999987654446899999999999988666677776665432 234567899999999999
Q ss_pred HHHHHHHHHHH
Q 029446 166 LYEGLDWLAST 176 (193)
Q Consensus 166 i~~~~~~l~~~ 176 (193)
+++++++|.+.
T Consensus 179 i~~l~~~l~~~ 189 (190)
T 1m2o_B 179 YLEAFQWLSQY 189 (190)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHhh
Confidence 99999999764
No 11
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=100.00 E-value=1.3e-35 Score=210.97 Aligned_cols=171 Identities=39% Similarity=0.608 Sum_probs=145.9
Q ss_pred hcCCCccEEEEEcCCCCCHHHHHHHHhcCCccc--cccccceeEEEEEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEE
Q 029446 12 FFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLS--TVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLI 89 (193)
Q Consensus 12 ~~~~~~~~v~v~G~~~~GKssli~~l~~~~~~~--~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (193)
.+....++|+++|.+|+|||||+++|.++.+.. +.+|.+.....+......+.+|||||++++...+..+++++|+++
T Consensus 12 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 91 (199)
T 4bas_A 12 GQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVETFEKGRVAFTVFDMGGAKKFRGLWETYYDNIDAVI 91 (199)
T ss_dssp ----CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEE
T ss_pred cCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHhcCCEEE
Confidence 345678999999999999999999999998875 378999888888889999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHcCCCC-------CCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcC-CCCceEEEEeccc
Q 029446 90 YVVDSLDRERIGKAKQEFQAIIKDPFM-------LNSVILVFANKQDMKGAMTPMEVCEGLGLFDL-KNRKWHIQGTCAL 161 (193)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-------~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~ 161 (193)
+|+|++++.+|+.+..|+..+...... .+.|+|+|+||+|+.+....+++.+.++...+ +..++++++|||+
T Consensus 92 ~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 171 (199)
T 4bas_A 92 FVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPFVIFASNGL 171 (199)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCEEEEECBTT
T ss_pred EEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCeeEEEEeeCC
Confidence 999999999999999999988764211 37899999999999988777788777765444 5678899999999
Q ss_pred cCCCHHHHHHHHHHHHHhhhc
Q 029446 162 KGDGLYEGLDWLASTLKEMRA 182 (193)
Q Consensus 162 ~~~gi~~~~~~l~~~~~~~~~ 182 (193)
+|+|+++++++|.+.+.+...
T Consensus 172 ~g~gv~~l~~~l~~~~~~~~~ 192 (199)
T 4bas_A 172 KGTGVHEGFSWLQETASRQSG 192 (199)
T ss_dssp TTBTHHHHHHHHHHHHHHHC-
T ss_pred CccCHHHHHHHHHHHHHHHhc
Confidence 999999999999999987654
No 12
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=100.00 E-value=2.7e-35 Score=207.93 Aligned_cols=167 Identities=30% Similarity=0.610 Sum_probs=147.3
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEEEEEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEE
Q 029446 14 GNSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVV 92 (193)
Q Consensus 14 ~~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (193)
....++|+++|.+|+|||||+++|.++.+. .+.+|.+.++..+......+.+||+||++++...+..+++++|++++|+
T Consensus 19 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 98 (188)
T 1zd9_A 19 SKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMV 98 (188)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHccCCEEEEEE
Confidence 356799999999999999999999998876 5678999998888888999999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHHH
Q 029446 93 DSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDW 172 (193)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~ 172 (193)
|++++.+++.+..|+..+.......+.|+++|+||+|+.+....+++.+.+....+...++++++|||++|.|+++++++
T Consensus 99 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~ 178 (188)
T 1zd9_A 99 DAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQW 178 (188)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCHHHHHHHhChhhhccCCeeEEEEECCCCCCHHHHHHH
Confidence 99999999999999999877544468999999999999887667777777776556667889999999999999999999
Q ss_pred HHHHHHhh
Q 029446 173 LASTLKEM 180 (193)
Q Consensus 173 l~~~~~~~ 180 (193)
|.+.+.++
T Consensus 179 l~~~~~~~ 186 (188)
T 1zd9_A 179 LIQHSKSR 186 (188)
T ss_dssp HHHTCC--
T ss_pred HHHHHHhh
Confidence 99887544
No 13
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=100.00 E-value=2.7e-35 Score=206.70 Aligned_cols=164 Identities=47% Similarity=0.832 Sum_probs=144.0
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEEEEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEE
Q 029446 13 FGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVV 92 (193)
Q Consensus 13 ~~~~~~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (193)
...+.++|+++|.+|+|||||+++|.++.+..+.+|.+.....+..++..+.+||+||+++++..+..+++++|++++|+
T Consensus 17 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 96 (181)
T 2h17_A 17 RGSQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVV 96 (181)
T ss_dssp ----CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCSSSSCEEEEETTEEEEEEEESSSGGGTCGGGGGGTTCCEEEEEE
T ss_pred CCCceeEEEEECCCCCCHHHHHHHHhcCCCCccCCcCceeeEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEE
Confidence 34577999999999999999999999998877788888888888888999999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHHH
Q 029446 93 DSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDW 172 (193)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~ 172 (193)
|++++.+++.+..|+..+.......+.|+++|+||+|+.+....+++.+.+.....+..++++++|||++|+|+++++++
T Consensus 97 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 176 (181)
T 2h17_A 97 DSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEW 176 (181)
T ss_dssp ETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHHHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHH
Confidence 99999999999999999877543468999999999999887677788877776666677889999999999999999999
Q ss_pred HHHH
Q 029446 173 LAST 176 (193)
Q Consensus 173 l~~~ 176 (193)
|.+.
T Consensus 177 l~~~ 180 (181)
T 2h17_A 177 MMSR 180 (181)
T ss_dssp HHTC
T ss_pred HHhh
Confidence 8764
No 14
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=100.00 E-value=1.1e-34 Score=206.54 Aligned_cols=165 Identities=32% Similarity=0.562 Sum_probs=133.3
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEEEEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEE
Q 029446 13 FGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVV 92 (193)
Q Consensus 13 ~~~~~~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (193)
...+.++|+++|++|||||||++++.++.+..+.+|.+.+...+..++..+.+|||||+++++..+..+++++|++++|+
T Consensus 21 ~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 100 (198)
T 1f6b_A 21 LYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLV 100 (198)
T ss_dssp CTTCCEEEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTEEEEEEEECC----CCGGGGGGGGCSEEEEEE
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECCEEEEEEECCCcHhhHHHHHHHHhcCCEEEEEE
Confidence 44678999999999999999999999988877788888888888888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCc---------C---CCCceEEEEecc
Q 029446 93 DSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFD---------L---KNRKWHIQGTCA 160 (193)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~---------~---~~~~~~~~~~Sa 160 (193)
|++++.+++++..|+..+.......+.|+++|+||+|+.+....+++.+.+.... + ....+++++|||
T Consensus 101 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA 180 (198)
T 1f6b_A 101 DCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSV 180 (198)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBT
T ss_pred ECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccccCCHHHHHHHhCcccccccccccccccccCceEEEEEEEC
Confidence 9999999999999999987754446899999999999987666666666555321 1 125678999999
Q ss_pred ccCCCHHHHHHHHHHHH
Q 029446 161 LKGDGLYEGLDWLASTL 177 (193)
Q Consensus 161 ~~~~gi~~~~~~l~~~~ 177 (193)
++|+|+++++++|.+.+
T Consensus 181 ~~g~gv~~l~~~l~~~l 197 (198)
T 1f6b_A 181 LKRQGYGEGFRWMAQYI 197 (198)
T ss_dssp TTTBSHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHHHHhc
Confidence 99999999999997653
No 15
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=100.00 E-value=3.2e-34 Score=202.63 Aligned_cols=166 Identities=42% Similarity=0.760 Sum_probs=142.6
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCC-cc-ccccccceeEEEEEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEE
Q 029446 14 GNSEMRVVMLGLDAAGKTTILYKLHIGE-VL-STVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYV 91 (193)
Q Consensus 14 ~~~~~~v~v~G~~~~GKssli~~l~~~~-~~-~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 91 (193)
..+.++|+++|.+|+|||||+++|.+.. +. .+.+|.+.....+..++..+.+|||||+++++..+..+++++|++++|
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v 97 (190)
T 2h57_A 18 GSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFV 97 (190)
T ss_dssp ---CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEEEEEEECSSCEEEEEEECCSTTTGGGGGGGGGGCSEEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccceeEEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEE
Confidence 3578999999999999999999999887 33 567888888888888889999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHcCCCC--CCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHH
Q 029446 92 VDSLDRERIGKAKQEFQAIIKDPFM--LNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEG 169 (193)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~ 169 (193)
+|++++.+++.+..|+..+...... .+.|+++|+||+|+.+....+++.+.+....+...++++++|||++|+|++++
T Consensus 98 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 177 (190)
T 2h57_A 98 IDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEG 177 (190)
T ss_dssp EETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhChhhccCCceEEEEccCCCCcCHHHH
Confidence 9999999999999999998876444 57999999999999887677777776654444556789999999999999999
Q ss_pred HHHHHHHHHh
Q 029446 170 LDWLASTLKE 179 (193)
Q Consensus 170 ~~~l~~~~~~ 179 (193)
+++|.+.+.+
T Consensus 178 ~~~l~~~i~~ 187 (190)
T 2h57_A 178 VDWLQDQIQT 187 (190)
T ss_dssp HHHHHHHC--
T ss_pred HHHHHHHHHH
Confidence 9999988754
No 16
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=100.00 E-value=8.7e-34 Score=216.06 Aligned_cols=166 Identities=61% Similarity=1.113 Sum_probs=147.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEEEEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEEC
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDS 94 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~ 94 (193)
.+.++|+|+|.+|+|||||+++|.++.+....||.+..+..+....+.+.+|||||++.+...+..+++++|++|+|||+
T Consensus 163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~pT~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D~ 242 (329)
T 3o47_A 163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS 242 (329)
T ss_dssp CCSEEEEEEESTTSSHHHHHHHTCSSCCEEEEEETTEEEEEEEETTEEEEEEECC-----CCSHHHHHTTEEEEEEEEET
T ss_pred cCcceEEEECCCCccHHHHHHHHhCCCCCCcccccceEEEEEecCcEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEEC
Confidence 46789999999999999999999999887777899999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHHHHH
Q 029446 95 LDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLA 174 (193)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~ 174 (193)
+++.+++.+..++..++......++|+|+|+||+|+.+....+++...++...++..+++++++||++|+||++++++|.
T Consensus 243 ~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~el~~~l~ 322 (329)
T 3o47_A 243 NDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLS 322 (329)
T ss_dssp TCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHHHHHHHhchhhhhcCCCEEEEEECCCCcCHHHHHHHHH
Confidence 99999999999999988765556899999999999998878888888888877778889999999999999999999999
Q ss_pred HHHHhh
Q 029446 175 STLKEM 180 (193)
Q Consensus 175 ~~~~~~ 180 (193)
+.+.++
T Consensus 323 ~~l~~~ 328 (329)
T 3o47_A 323 NQLRNQ 328 (329)
T ss_dssp HHHTC-
T ss_pred HHHHhc
Confidence 988543
No 17
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=100.00 E-value=2.1e-34 Score=201.89 Aligned_cols=172 Identities=17% Similarity=0.196 Sum_probs=133.1
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE-EEEEcC--EEEEEEecCCCCCCHHhHHhhhcCCCEEE
Q 029446 14 GNSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE-KVQYKN--VIFTVWDVGGQEKLRPLWRHYFNNTDGLI 89 (193)
Q Consensus 14 ~~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~-~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (193)
..+.++|+++|++|+|||||+++|.++.+. .+.+|.+..+. .+...+ +.+.+||+||++++...+..+++++|+++
T Consensus 3 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i 82 (181)
T 3t5g_A 3 QSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYI 82 (181)
T ss_dssp CEEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEE
Confidence 346799999999999999999999987766 45677776653 233343 78899999999999989999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcCCCCceEEEEeccccCCCHH
Q 029446 90 YVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT--PMEVCEGLGLFDLKNRKWHIQGTCALKGDGLY 167 (193)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 167 (193)
+|+|++++.+++.+..|+..+.......+.|+++|+||+|+.+... .++..+ + ++..+++++++||++++|++
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~-~----~~~~~~~~~~~Sa~~~~~v~ 157 (181)
T 3t5g_A 83 LVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKA-L----AESWNAAFLESSAKENQTAV 157 (181)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHH-H----HHHTTCEEEECCTTSHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHH-H----HHHhCCcEEEEecCCCCCHH
Confidence 9999999999999999998887755556899999999999865422 222221 1 12335589999999999999
Q ss_pred HHHHHHHHHHHhhhccCCCCCCcCC
Q 029446 168 EGLDWLASTLKEMRAAGYSSVGTSS 192 (193)
Q Consensus 168 ~~~~~l~~~~~~~~~~~~~~~~~~~ 192 (193)
++|++|.+.+.+.. +..++|+||
T Consensus 158 ~l~~~l~~~~~~~~--~~~~~gkss 180 (181)
T 3t5g_A 158 DVFRRIILEAEKMD--GACSQGKSS 180 (181)
T ss_dssp HHHHHHHHHHHTC-------CCBSC
T ss_pred HHHHHHHHHHHHhc--CCcccCcCC
Confidence 99999999997766 667777775
No 18
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=100.00 E-value=1.3e-33 Score=195.02 Aligned_cols=160 Identities=15% Similarity=0.125 Sum_probs=107.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEE-EEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEE
Q 029446 17 EMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEK-VQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVD 93 (193)
Q Consensus 17 ~~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~-~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 93 (193)
.+||+++|++|+|||||++++.+.......++.+.++.. +.. ....+.+||+||++.+...+..+++++|++++|+|
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 81 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYS 81 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC----------CEEEEEEEETTEEEEEEEEECC---------------CCEEEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccceEEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEEE
Confidence 589999999999999999999987776555666555432 222 46789999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH-hHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHHH
Q 029446 94 SLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP-MEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDW 172 (193)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~ 172 (193)
++++.+++.+..|+..+.......+.|+++|+||+|+.+.... .+..+.+ ....+++++++||++|+|+++++++
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~----~~~~~~~~~~~Sa~~~~gi~~l~~~ 157 (166)
T 3q72_A 82 VTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRAC----AVVFDCKFIETSAALHHNVQALFEG 157 (166)
T ss_dssp TTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHH----HHHTTCEEEECBGGGTBSHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHH----HHHhCCcEEEeccCCCCCHHHHHHH
Confidence 9999999999999999887655578999999999999764322 1111111 1223458999999999999999999
Q ss_pred HHHHHHhh
Q 029446 173 LASTLKEM 180 (193)
Q Consensus 173 l~~~~~~~ 180 (193)
|.+.+.++
T Consensus 158 l~~~~~~~ 165 (166)
T 3q72_A 158 VVRQIRLR 165 (166)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 99988764
No 19
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=100.00 E-value=1.4e-32 Score=220.25 Aligned_cols=168 Identities=61% Similarity=1.079 Sum_probs=151.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEEEEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEEC
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDS 94 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~ 94 (193)
.+.+||+++|.+|+|||||+++|.++.+..+.+|.+.++..+.+.++.+.+|||||++.++..+..+++++|++|+|||+
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~~~~T~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~V~D~ 399 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDC 399 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEEEEEESSSCEEEEEEECCCGGGSGGGGGGGTTCCEEEEEEET
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCCCCcCCccceeEEEEEeCCEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEEC
Confidence 46799999999999999999999999988888999999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHHHHH
Q 029446 95 LDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLA 174 (193)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~ 174 (193)
+++.+++.+..|+..++......++|+|+|+||+|+.+....+++.+.++....+..++++++|||++|+||++++++|.
T Consensus 400 ~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~ 479 (497)
T 3lvq_E 400 ADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLT 479 (497)
T ss_dssp TCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCCCHHHHHHHTTCTTCCSSCEEEEECBTTTTBTHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCCCHHHHHHHhchhhhhcCCeEEEEEECCCCCCHHHHHHHHH
Confidence 99999999999999998765556899999999999998877888888888777777888999999999999999999999
Q ss_pred HHHHhhhc
Q 029446 175 STLKEMRA 182 (193)
Q Consensus 175 ~~~~~~~~ 182 (193)
+.+.+...
T Consensus 480 ~~~~~~~~ 487 (497)
T 3lvq_E 480 SNYKSKLA 487 (497)
T ss_dssp HHCC----
T ss_pred HHHHhcCC
Confidence 98865553
No 20
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2e-32 Score=193.79 Aligned_cols=173 Identities=19% Similarity=0.312 Sum_probs=132.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE--EEEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEEE
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE--KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLI 89 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (193)
...++|+++|++|+|||||+++|.+..+. .+.+|.+.++. .+.. ....+.+||+||++.+...+..+++++|+++
T Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 92 (195)
T 1x3s_A 13 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVI 92 (195)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEE
Confidence 35689999999999999999999998876 45677776654 3333 3578999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCcCCCCceEEEEeccccCCCHHH
Q 029446 90 YVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT-PMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYE 168 (193)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 168 (193)
+|+|++++.+++.+..|+..+.......+.|+++|+||+|+.+... .++..+ + ++..+++++++||+++.|+++
T Consensus 93 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~-~----~~~~~~~~~~~Sa~~~~gi~~ 167 (195)
T 1x3s_A 93 LVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLK-F----ARKHSMLFIEASAKTCDGVQC 167 (195)
T ss_dssp EEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHH-H----HHHTTCEEEECCTTTCTTHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHH-H----HHHcCCEEEEecCCCCCCHHH
Confidence 9999999999999999988887654446899999999999965422 222222 1 123346899999999999999
Q ss_pred HHHHHHHHHHhhhc---cCCCCCCcCC
Q 029446 169 GLDWLASTLKEMRA---AGYSSVGTSS 192 (193)
Q Consensus 169 ~~~~l~~~~~~~~~---~~~~~~~~~~ 192 (193)
++++|.+.+.+... ....++||||
T Consensus 168 l~~~l~~~~~~~~~~~~~~~~n~gkSs 194 (195)
T 1x3s_A 168 AFEELVEKIIQTPGLWESENQNSGPSS 194 (195)
T ss_dssp HHHHHHHHHHTSGGGTCC---------
T ss_pred HHHHHHHHHHhhhhhhcccccCCCCCC
Confidence 99999999876542 3556777775
No 21
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=100.00 E-value=4.9e-33 Score=193.67 Aligned_cols=163 Identities=17% Similarity=0.095 Sum_probs=119.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccccccccceeE--EEEEEc--CEEEEEEecCCCCC--CHHhHHhhhcCCCEE
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNV--EKVQYK--NVIFTVWDVGGQEK--LRPLWRHYFNNTDGL 88 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~--~~~~~~--~~~~~i~D~~g~~~--~~~~~~~~~~~~d~~ 88 (193)
.+.+||+++|++|+|||||+++|.+..+....++.+.+. ..+... .+.+.+||+||++. +......+++.+|++
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~ 81 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAY 81 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEE
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEE
Confidence 467999999999999999999999988775555666553 334443 46899999999988 567778888999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcCCCCceEEEEeccccCCCH
Q 029446 89 IYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT--PMEVCEGLGLFDLKNRKWHIQGTCALKGDGL 166 (193)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 166 (193)
++|+|++++.+++.+..|+..+.......+.|+++|+||+|+.+... .++.. .+ ....+++++++||++|+|+
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~-~~----~~~~~~~~~~~Sa~~g~gi 156 (175)
T 2nzj_A 82 VIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGR-AC----AVVFDCKFIETSATLQHNV 156 (175)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHH-HH----HHHHTSEEEECBTTTTBSH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHH-HH----HHHcCCeEEEEecCCCCCH
Confidence 99999999999999999988887654446899999999999976422 22221 11 1123458999999999999
Q ss_pred HHHHHHHHHHHHhhhc
Q 029446 167 YEGLDWLASTLKEMRA 182 (193)
Q Consensus 167 ~~~~~~l~~~~~~~~~ 182 (193)
++++++|.+.+.+++.
T Consensus 157 ~~l~~~l~~~~~~~~~ 172 (175)
T 2nzj_A 157 AELFEGVVRQLRLRRR 172 (175)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhhc
Confidence 9999999999876553
No 22
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=100.00 E-value=7.8e-33 Score=193.55 Aligned_cols=168 Identities=15% Similarity=0.213 Sum_probs=134.1
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE-EEEEc--CEEEEEEecCCCCCCHHhHHhhhcCCCEE
Q 029446 13 FGNSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE-KVQYK--NVIFTVWDVGGQEKLRPLWRHYFNNTDGL 88 (193)
Q Consensus 13 ~~~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~-~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 88 (193)
+....++|+++|.+|+|||||++++.++.+. .+.+|.+..+. .+... ...+.+||+||++++...+..+++++|++
T Consensus 5 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~ 84 (181)
T 2fn4_A 5 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGF 84 (181)
T ss_dssp CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEE
Confidence 4467899999999999999999999998776 45677776654 23444 36899999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH-hHHHhhhCCCcCCCCceEEEEeccccCCCHH
Q 029446 89 IYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP-MEVCEGLGLFDLKNRKWHIQGTCALKGDGLY 167 (193)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 167 (193)
++|+|++++.+++.+..|+..+.......+.|+++|+||+|+.+.... .+..+.+. ...+++++++||++|.|++
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~----~~~~~~~~~~Sa~~~~gv~ 160 (181)
T 2fn4_A 85 LLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFG----ASHHVAYFEASAKLRLNVD 160 (181)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHH----HHTTCEEEECBTTTTBSHH
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHH----HHcCCeEEEecCCCCCCHH
Confidence 999999999999999999988866444468999999999999763221 12222221 2335689999999999999
Q ss_pred HHHHHHHHHHHhhhccC
Q 029446 168 EGLDWLASTLKEMRAAG 184 (193)
Q Consensus 168 ~~~~~l~~~~~~~~~~~ 184 (193)
+++++|.+.+.+.....
T Consensus 161 ~l~~~l~~~~~~~~~~~ 177 (181)
T 2fn4_A 161 EAFEQLVRAVRKYQEQE 177 (181)
T ss_dssp HHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHhhccC
Confidence 99999999998766533
No 23
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=100.00 E-value=4.4e-32 Score=192.29 Aligned_cols=167 Identities=19% Similarity=0.210 Sum_probs=131.7
Q ss_pred hhhcCCCccEEEEEcCCCCCHHHHHHHHhcCCcccc-----------ccccceeEEEE-----EEcCEEEEEEecCCCCC
Q 029446 10 DVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLST-----------VPTIGFNVEKV-----QYKNVIFTVWDVGGQEK 73 (193)
Q Consensus 10 ~~~~~~~~~~v~v~G~~~~GKssli~~l~~~~~~~~-----------~~t~~~~~~~~-----~~~~~~~~i~D~~g~~~ 73 (193)
+.......+||+++|++|+|||||++.+.+.....+ .+|.+.++... ....+.+.+|||||+++
T Consensus 7 ~~~~~~~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 86 (198)
T 3t1o_A 7 NFANREINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVF 86 (198)
T ss_dssp ETTTTEEEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCS
T ss_pred chhccccccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHH
Confidence 334456789999999999999999987776544332 24555554432 22457899999999999
Q ss_pred CHHhHHhhhcCCCEEEEEEECC------ChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCc
Q 029446 74 LRPLWRHYFNNTDGLIYVVDSL------DRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFD 147 (193)
Q Consensus 74 ~~~~~~~~~~~~d~~i~v~d~~------~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~ 147 (193)
+...+..+++++|++++|+|++ +..++..+..|+..+.. ...+.|+++|+||+|+.+....++..+...
T Consensus 87 ~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~--~~~~~piilv~NK~Dl~~~~~~~~~~~~~~--- 161 (198)
T 3t1o_A 87 YNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGL--TLDDVPIVIQVNKRDLPDALPVEMVRAVVD--- 161 (198)
T ss_dssp CSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTC--CTTSSCEEEEEECTTSTTCCCHHHHHHHHC---
T ss_pred HHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhcc--ccCCCCEEEEEEchhcccccCHHHHHHHHH---
Confidence 9999999999999999999999 56778888888877632 347899999999999988766666655443
Q ss_pred CCCCce-EEEEeccccCCCHHHHHHHHHHHHHhhhcc
Q 029446 148 LKNRKW-HIQGTCALKGDGLYEGLDWLASTLKEMRAA 183 (193)
Q Consensus 148 ~~~~~~-~~~~~Sa~~~~gi~~~~~~l~~~~~~~~~~ 183 (193)
..++ +++++||++|+|+++++++|.+.+.++...
T Consensus 162 --~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~~~ 196 (198)
T 3t1o_A 162 --PEGKFPVLEAVATEGKGVFETLKEVSRLVLARVAG 196 (198)
T ss_dssp --TTCCSCEEECBGGGTBTHHHHHHHHHHHHHHHHC-
T ss_pred --hcCCceEEEEecCCCcCHHHHHHHHHHHHHHHhhc
Confidence 3455 899999999999999999999999877643
No 24
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=100.00 E-value=8.2e-33 Score=195.50 Aligned_cols=168 Identities=18% Similarity=0.292 Sum_probs=134.7
Q ss_pred hhcCCCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE---EEEEc-----------CEEEEEEecCCCCCCH
Q 029446 11 VFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE---KVQYK-----------NVIFTVWDVGGQEKLR 75 (193)
Q Consensus 11 ~~~~~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~---~~~~~-----------~~~~~i~D~~g~~~~~ 75 (193)
....+..++|+++|++|+|||||++++.++.+. .+.+|.+.++. .+... ...+.+||+||++++.
T Consensus 5 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 84 (195)
T 3bc1_A 5 DGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFR 84 (195)
T ss_dssp -CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGH
T ss_pred ccccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHH
Confidence 334567799999999999999999999998876 45678887765 33333 4689999999999999
Q ss_pred HhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCcCCCCce
Q 029446 76 PLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA--MTPMEVCEGLGLFDLKNRKW 153 (193)
Q Consensus 76 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~ 153 (193)
..+..+++++|++++|+|++++.+++.+..|+..+.......+.|+++|+||+|+.+. ...++..+.. +..++
T Consensus 85 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~ 159 (195)
T 3bc1_A 85 SLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELA-----EKYGI 159 (195)
T ss_dssp HHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHH-----HHHTC
T ss_pred HHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHH-----HHcCC
Confidence 9999999999999999999999999999988888876544468999999999999763 2222222211 12234
Q ss_pred EEEEeccccCCCHHHHHHHHHHHHHhhhcc
Q 029446 154 HIQGTCALKGDGLYEGLDWLASTLKEMRAA 183 (193)
Q Consensus 154 ~~~~~Sa~~~~gi~~~~~~l~~~~~~~~~~ 183 (193)
+++++||+++.|+++++++|.+.+.++...
T Consensus 160 ~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~~ 189 (195)
T 3bc1_A 160 PYFETSAANGTNISHAIEMLLDLIMKRMER 189 (195)
T ss_dssp CEEECCTTTCTTHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHhhh
Confidence 799999999999999999999999876654
No 25
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=100.00 E-value=2.5e-33 Score=196.77 Aligned_cols=166 Identities=17% Similarity=0.314 Sum_probs=106.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE--EEEEcC--EEEEEEecCCCCCCHHhHHhhhcCCCEEE
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE--KVQYKN--VIFTVWDVGGQEKLRPLWRHYFNNTDGLI 89 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (193)
+..++|+++|++|+|||||+++|.++.+. .+.+|.+.++. .+..++ ..+.+||+||++++...+..+++++|+++
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 85 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIM 85 (183)
T ss_dssp SEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEE
Confidence 46799999999999999999999988776 45677776654 444444 88999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcCCCCceEEEEeccccCCCHH
Q 029446 90 YVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLY 167 (193)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 167 (193)
+|+|++++.+++.+..|+..+... ...+.|+++|+||+|+.+.. ..++..+ + ++..+++++++||++|+|++
T Consensus 86 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~v~~~~~~~-~----~~~~~~~~~~~Sa~~~~~i~ 159 (183)
T 2fu5_C 86 LVYDITNEKSFDNIRNWIRNIEEH-ASADVEKMILGNKCDVNDKRQVSKERGEK-L----ALDYGIKFMETSAKANINVE 159 (183)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEEC--CCSCCCSCHHHHHH-H----HHHHTCEEEECCC---CCHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECccCCccCcCCHHHHHH-H----HHHcCCeEEEEeCCCCCCHH
Confidence 999999999999999888887653 23579999999999997642 2222221 1 12234589999999999999
Q ss_pred HHHHHHHHHHHhhhccCCC
Q 029446 168 EGLDWLASTLKEMRAAGYS 186 (193)
Q Consensus 168 ~~~~~l~~~~~~~~~~~~~ 186 (193)
+++++|.+.+.++......
T Consensus 160 ~l~~~l~~~i~~~~~~~~~ 178 (183)
T 2fu5_C 160 NAFFTLARDIKAKMDKNWK 178 (183)
T ss_dssp HHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHhhcccc
Confidence 9999999999876654443
No 26
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=4.9e-33 Score=192.61 Aligned_cols=158 Identities=23% Similarity=0.350 Sum_probs=126.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE--EEEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEE
Q 029446 16 SEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE--KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIY 90 (193)
Q Consensus 16 ~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 90 (193)
..++|+++|++|+|||||++++.++.+. .+.++.+.+.. .+.. ....+.+||+||++++...+..+++++|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV 81 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence 3589999999999999999999998876 45677776653 3333 35689999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC----HhHHHhhhCCCcCCCCceEEEEeccccCCCH
Q 029446 91 VVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT----PMEVCEGLGLFDLKNRKWHIQGTCALKGDGL 166 (193)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 166 (193)
|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+... ..+..+.+ ++..+++++++||++|.|+
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~----~~~~~~~~~~~Sa~~~~gi 156 (170)
T 1ek0_A 82 VYDVTKPQSFIKARHWVKELHEQA-SKDIIIALVGNKIDXLQEGGERKVAREEGEKL----AEEKGLLFFETSAKTGENV 156 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGSSCCCCSCHHHHHHH----HHHHTCEEEECCTTTCTTH
T ss_pred EEecCChHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCCccccccccCCCHHHHHHH----HHHcCCEEEEEeCCCCCCH
Confidence 999999999999999888876643 36899999999999876421 11111111 1233458999999999999
Q ss_pred HHHHHHHHHHHH
Q 029446 167 YEGLDWLASTLK 178 (193)
Q Consensus 167 ~~~~~~l~~~~~ 178 (193)
++++++|.+.+.
T Consensus 157 ~~l~~~l~~~i~ 168 (170)
T 1ek0_A 157 NDVFLGIGEKIP 168 (170)
T ss_dssp HHHHHHHHTTSC
T ss_pred HHHHHHHHHHHh
Confidence 999999987663
No 27
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=100.00 E-value=1.4e-32 Score=191.96 Aligned_cols=166 Identities=18% Similarity=0.274 Sum_probs=128.7
Q ss_pred HhhhhcCCCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE--EEEE--cCEEEEEEecCCCCCCHHhHHhhh
Q 029446 8 LFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE--KVQY--KNVIFTVWDVGGQEKLRPLWRHYF 82 (193)
Q Consensus 8 ~~~~~~~~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~--~~~~~~i~D~~g~~~~~~~~~~~~ 82 (193)
........+.++|+++|.+|+|||||++++.+..+. .+.+|.+.++. .+.. ....+.+||+||++++...+..++
T Consensus 6 ~~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~ 85 (179)
T 1z0f_A 6 ATAPYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYY 85 (179)
T ss_dssp -----CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHH
T ss_pred CCCccccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHh
Confidence 333344567899999999999999999999998876 35566665543 3334 357899999999999999999999
Q ss_pred cCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcCCCCceEEEEecc
Q 029446 83 NNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCA 160 (193)
Q Consensus 83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (193)
+++|++++|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.. ..++..+.. +..+++++++||
T Consensus 86 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa 159 (179)
T 1z0f_A 86 RGAAGALMVYDITRRSTYNHLSSWLTDARNLT-NPNTVIILIGNKADLEAQRDVTYEEAKQFA-----EENGLLFLEASA 159 (179)
T ss_dssp HTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHH-----HHTTCEEEECCT
T ss_pred ccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECcccccccccCHHHHHHHH-----HHcCCEEEEEeC
Confidence 99999999999999999999988888776542 2579999999999997532 222222211 223468999999
Q ss_pred ccCCCHHHHHHHHHHHHHh
Q 029446 161 LKGDGLYEGLDWLASTLKE 179 (193)
Q Consensus 161 ~~~~gi~~~~~~l~~~~~~ 179 (193)
++++|+++++++|.+.+.+
T Consensus 160 ~~~~gi~~l~~~l~~~i~~ 178 (179)
T 1z0f_A 160 KTGENVEDAFLEAAKKIYQ 178 (179)
T ss_dssp TTCTTHHHHHHHHHHHHC-
T ss_pred CCCCCHHHHHHHHHHHHhh
Confidence 9999999999999988754
No 28
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=100.00 E-value=1e-32 Score=193.58 Aligned_cols=162 Identities=19% Similarity=0.200 Sum_probs=129.1
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEEE-EEEc--CEEEEEEecCCCCCCHHhHHhhhcCCCEE
Q 029446 13 FGNSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVEK-VQYK--NVIFTVWDVGGQEKLRPLWRHYFNNTDGL 88 (193)
Q Consensus 13 ~~~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~-~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 88 (193)
.....+||+++|++|+|||||++++.++.+. .+.+|.+..+.. +... .+.+.+||+||++.+...+..+++++|++
T Consensus 14 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 93 (183)
T 3kkq_A 14 ENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGF 93 (183)
T ss_dssp CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEE
T ss_pred cCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEE
Confidence 3457899999999999999999999988776 455676655532 3333 45677899999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcCCCCceEEEEeccc-cCCC
Q 029446 89 IYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCAL-KGDG 165 (193)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~-~~~g 165 (193)
++|+|++++.+++.+..|+..+.......+.|+++|+||+|+.+.. ..++..+ + ++..+++++++||+ +++|
T Consensus 94 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~-~----~~~~~~~~~~~Sa~~~~~~ 168 (183)
T 3kkq_A 94 LIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKE-M----ATKYNIPYIETSAKDPPLN 168 (183)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHH-H----HHHHTCCEEEEBCSSSCBS
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHH-H----HHHhCCeEEEeccCCCCCC
Confidence 9999999999999999998888764444689999999999987632 2222211 1 11223579999999 9999
Q ss_pred HHHHHHHHHHHHHh
Q 029446 166 LYEGLDWLASTLKE 179 (193)
Q Consensus 166 i~~~~~~l~~~~~~ 179 (193)
++++|++|.+.+.+
T Consensus 169 v~~l~~~l~~~i~~ 182 (183)
T 3kkq_A 169 VDKTFHDLVRVIRQ 182 (183)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999998865
No 29
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=100.00 E-value=2.3e-32 Score=193.72 Aligned_cols=165 Identities=21% Similarity=0.350 Sum_probs=130.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE--EEEEcC--EEEEEEecCCCCCCHHhHHhhhcCCCEEE
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE--KVQYKN--VIFTVWDVGGQEKLRPLWRHYFNNTDGLI 89 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (193)
+..++|+++|++|+|||||+++|.++.+. .+.++.+.++. .+...+ +.+.+||+||++.+...+..+++++|+++
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 93 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 93 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEE
Confidence 46799999999999999999999998876 45567665554 444444 78999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHh-HHHhhhCCCcCCCCceEEEEeccccCCCHHH
Q 029446 90 YVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPM-EVCEGLGLFDLKNRKWHIQGTCALKGDGLYE 168 (193)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 168 (193)
+|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+..... +..+.+ .+..+++++++||+++.|+++
T Consensus 94 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~----~~~~~~~~~~~Sa~~g~gv~~ 168 (196)
T 3tkl_A 94 VVYDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTTKKVVDYTTAKEF----ADSLGIPFLETSAKNATNVEQ 168 (196)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHH----HHHTTCCEEEECTTTCTTHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccccccccCHHHHHHH----HHHcCCcEEEEeCCCCCCHHH
Confidence 9999999999999998888776542 3589999999999997653221 111111 122345799999999999999
Q ss_pred HHHHHHHHHHhhhccC
Q 029446 169 GLDWLASTLKEMRAAG 184 (193)
Q Consensus 169 ~~~~l~~~~~~~~~~~ 184 (193)
+|++|.+.+.++...+
T Consensus 169 l~~~l~~~i~~~~~~~ 184 (196)
T 3tkl_A 169 SFMTMAAEIKKRMGPG 184 (196)
T ss_dssp HHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHhccc
Confidence 9999999998877543
No 30
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=100.00 E-value=2.2e-31 Score=187.37 Aligned_cols=160 Identities=15% Similarity=0.237 Sum_probs=124.8
Q ss_pred hcCCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccceeEEEEEEcC--EEEEEEecCCCCCCHHhHHhhhcCCCEE
Q 029446 12 FFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLS-TVPTIGFNVEKVQYKN--VIFTVWDVGGQEKLRPLWRHYFNNTDGL 88 (193)
Q Consensus 12 ~~~~~~~~v~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 88 (193)
......+||+++|++|||||||++++.++.+.. +.+|.+.....+...+ +.+.+|||+|++.++ +++++|++
T Consensus 15 ~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~ 89 (184)
T 3ihw_A 15 YFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAV 89 (184)
T ss_dssp -CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSEE
T ss_pred CCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEEEEEEEEECCCChhhh-----eecCCCEE
Confidence 345678999999999999999999999998774 4566443333455544 778899999998877 67889999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC----CCHhHHHhhhCCCcCCCC-ceEEEEeccccC
Q 029446 89 IYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA----MTPMEVCEGLGLFDLKNR-KWHIQGTCALKG 163 (193)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~ 163 (193)
++|||++++.+++.+..|+..+.......+.|+++|+||+|+... ...++..+.. +.. .+++++|||++|
T Consensus 90 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~-----~~~~~~~~~e~Sa~~~ 164 (184)
T 3ihw_A 90 VFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLS-----TDLKRCTYYETCATYG 164 (184)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHH-----HHTTTCEEEEEBTTTT
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHH-----HHcCCCeEEEecCCCC
Confidence 999999999999999999999876544467999999999998531 2222222111 112 258999999999
Q ss_pred CCHHHHHHHHHHHHHhhh
Q 029446 164 DGLYEGLDWLASTLKEMR 181 (193)
Q Consensus 164 ~gi~~~~~~l~~~~~~~~ 181 (193)
+|++++|++|.+.+.+.+
T Consensus 165 ~gv~~lf~~l~~~i~~~~ 182 (184)
T 3ihw_A 165 LNVERVFQDVAQKVVALR 182 (184)
T ss_dssp BTHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHh
Confidence 999999999999987665
No 31
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=100.00 E-value=2.2e-32 Score=194.99 Aligned_cols=163 Identities=21% Similarity=0.305 Sum_probs=126.3
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeE--EEEEEcC--EEEEEEecCCCCCCHHhHHhhhcCCCEE
Q 029446 14 GNSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNV--EKVQYKN--VIFTVWDVGGQEKLRPLWRHYFNNTDGL 88 (193)
Q Consensus 14 ~~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 88 (193)
..+.+||+++|++|+|||||+++|.++.+. .+.+|.+.++ ..+..++ +.+.+||+||++++...+..+++++|++
T Consensus 26 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i 105 (201)
T 2hup_A 26 YDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGA 105 (201)
T ss_dssp CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEE
T ss_pred cccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEE
Confidence 356799999999999999999999998876 4567766554 3455544 7999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCcCCCCce-EEEEeccccCCC
Q 029446 89 IYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA--MTPMEVCEGLGLFDLKNRKW-HIQGTCALKGDG 165 (193)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~g 165 (193)
++|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+. ...++..+.. +..++ ++++|||++++|
T Consensus 106 ilv~D~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~~SA~~g~g 179 (201)
T 2hup_A 106 ILAYDITKRSSFLSVPHWIEDVRKYA-GSNIVQLLIGNKSDLSELREVSLAEAQSLA-----EHYDILCAIETSAKDSSN 179 (201)
T ss_dssp EEEEETTBHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHH-----HHTTCSEEEECBTTTTBS
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCccccccccCHHHHHHHH-----HHcCCCEEEEEeCCCCCC
Confidence 99999999999999998888876542 367999999999999763 2233332211 22345 899999999999
Q ss_pred HHHHHHHHHHHHHhhhc
Q 029446 166 LYEGLDWLASTLKEMRA 182 (193)
Q Consensus 166 i~~~~~~l~~~~~~~~~ 182 (193)
+++++++|.+.+.++..
T Consensus 180 i~~l~~~l~~~i~~~~~ 196 (201)
T 2hup_A 180 VEEAFLRVATELIMRHG 196 (201)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 99999999999977653
No 32
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=100.00 E-value=4.8e-33 Score=198.32 Aligned_cols=167 Identities=14% Similarity=0.119 Sum_probs=127.4
Q ss_pred hcCCCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEEE---EEEcCEEEEEEecCCCCCCHHhHHhhhcCCCE
Q 029446 12 FFGNSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVEK---VQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDG 87 (193)
Q Consensus 12 ~~~~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~---~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 87 (193)
.+..+.+||+++|.+|+|||||+++|.++.+. .+.+|.+..+.. +....+.+.+|||||++++...+..+++++|+
T Consensus 19 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 98 (201)
T 3oes_A 19 MPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHG 98 (201)
T ss_dssp ----CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCE
T ss_pred CCCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCE
Confidence 44567899999999999999999999998877 345676655432 22357889999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHh-HHHhhhCCCcCCCCceEEEEeccccCCCH
Q 029446 88 LIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPM-EVCEGLGLFDLKNRKWHIQGTCALKGDGL 166 (193)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 166 (193)
+++|+|++++.+++.+..|+..+.......+.|+++|+||+|+.+..... +..+.+ .+..+++++++||++|.|+
T Consensus 99 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~----~~~~~~~~~~~Sa~~~~~v 174 (201)
T 3oes_A 99 YVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKL----AESWGATFMESSARENQLT 174 (201)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHH----HHHHTCEEEECCTTCHHHH
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHH----HHHhCCeEEEEeCCCCCCH
Confidence 99999999999999999999998776555689999999999987542211 111111 1233458999999999999
Q ss_pred HHHHHHHHHHHHhhhc
Q 029446 167 YEGLDWLASTLKEMRA 182 (193)
Q Consensus 167 ~~~~~~l~~~~~~~~~ 182 (193)
+++|++|.+.+.+...
T Consensus 175 ~~l~~~l~~~i~~~~~ 190 (201)
T 3oes_A 175 QGIFTKVIQEIARVEN 190 (201)
T ss_dssp HHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHhhhh
Confidence 9999999999977664
No 33
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.98 E-value=2.2e-32 Score=188.89 Aligned_cols=159 Identities=19% Similarity=0.238 Sum_probs=125.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE-EEEEc--CEEEEEEecCCCCCCHHhHHhhhcCCCEEEEE
Q 029446 16 SEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE-KVQYK--NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYV 91 (193)
Q Consensus 16 ~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~-~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 91 (193)
..++|+++|++|+|||||++++.++.+. .+.+|.+..+. .+... .+.+.+||+||++++...+..+++++|++++|
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 82 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCV 82 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEEE
Confidence 5689999999999999999999988876 44566665553 23343 46899999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHH
Q 029446 92 VDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEG 169 (193)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~ 169 (193)
+|++++.+++.+..|+..+.......+.|+++|+||+|+.+.. ..++..... +..+++++++||+++.|++++
T Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l 157 (168)
T 1u8z_A 83 FSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRA-----DQWNVNYVETSAKTRANVDKV 157 (168)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHH-----HHHTCEEEECCTTTCTTHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHH-----HHcCCeEEEeCCCCCCCHHHH
Confidence 9999999999999988888765444689999999999987532 222222211 223458999999999999999
Q ss_pred HHHHHHHHHh
Q 029446 170 LDWLASTLKE 179 (193)
Q Consensus 170 ~~~l~~~~~~ 179 (193)
+++|.+.+.+
T Consensus 158 ~~~l~~~i~~ 167 (168)
T 1u8z_A 158 FFDLMREIRA 167 (168)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 9999998854
No 34
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.98 E-value=1.5e-31 Score=188.26 Aligned_cols=164 Identities=16% Similarity=0.272 Sum_probs=127.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccceeEE-EEEEc--CEEEEEEecCCCCCCHHhHHhhhcCCCEEEE
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHIGEVLS-TVPTIGFNVE-KVQYK--NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIY 90 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~-~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 90 (193)
+..++|+++|++|+|||||+++|.+..+.. +.+|.+..+. .+... ...+.+||+||++.+...+..+++++|++++
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 81 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 81 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence 467999999999999999999999888763 4455544333 33333 4568899999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHH
Q 029446 91 VVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGL 170 (193)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~ 170 (193)
|+|++++.+++.+..|+..+.......+.|+++|+||+|+.+.....+..+.+. +..+++++++||++|.|+++++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~g~gi~~l~ 157 (189)
T 4dsu_A 82 VFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLA----RSYGIPFIETSAKTRQGVDDAF 157 (189)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHH----HHHTCCEEECCTTTCTTHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHH----HHcCCeEEEEeCCCCCCHHHHH
Confidence 999999999999999998887755557899999999999986543322222221 1223479999999999999999
Q ss_pred HHHHHHHHhhhc
Q 029446 171 DWLASTLKEMRA 182 (193)
Q Consensus 171 ~~l~~~~~~~~~ 182 (193)
++|.+.+.+...
T Consensus 158 ~~l~~~~~~~~~ 169 (189)
T 4dsu_A 158 YTLVREIRKHKE 169 (189)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhh
Confidence 999998876553
No 35
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.98 E-value=2e-32 Score=189.12 Aligned_cols=158 Identities=17% Similarity=0.238 Sum_probs=126.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEEE-EEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEE
Q 029446 16 SEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVEK-VQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYV 91 (193)
Q Consensus 16 ~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~-~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 91 (193)
+.++|+++|++|+|||||++++.++.+. .+.+|.+..+.. +.. ....+.+||+||++++...+..+++++|++++|
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 81 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV 81 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence 4689999999999999999999998776 455676655542 222 357899999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcCCC-CceEEEEeccccCCCHHH
Q 029446 92 VDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT--PMEVCEGLGLFDLKN-RKWHIQGTCALKGDGLYE 168 (193)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~gi~~ 168 (193)
+|++++.+++.+..|+..+.......+.|+++|+||+|+.+... .++..+ +. +. .+.+++++||++|.|+++
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~-~~----~~~~~~~~~~~Sa~~~~gi~~ 156 (167)
T 1c1y_A 82 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQN-LA----RQWCNCAFLESSAKSKINVNE 156 (167)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHH-HH----HHTTSCEEEECBTTTTBSHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHH-HH----HHccCCcEEEecCCCCCCHHH
Confidence 99999999999988888877643346899999999999976422 222222 11 11 245899999999999999
Q ss_pred HHHHHHHHHH
Q 029446 169 GLDWLASTLK 178 (193)
Q Consensus 169 ~~~~l~~~~~ 178 (193)
++++|.+.+.
T Consensus 157 l~~~l~~~i~ 166 (167)
T 1c1y_A 157 IFYDLVRQIN 166 (167)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 9999998773
No 36
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.98 E-value=2.4e-32 Score=194.78 Aligned_cols=163 Identities=20% Similarity=0.265 Sum_probs=131.2
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE--EEEEc--CEEEEEEecCCCCCCHHhHHhhhcCCCEE
Q 029446 14 GNSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE--KVQYK--NVIFTVWDVGGQEKLRPLWRHYFNNTDGL 88 (193)
Q Consensus 14 ~~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 88 (193)
.++.+||+++|++|+|||||+++|.++.+. .+.+|.+.++. .+..+ .+.+.+|||||++++...+..+++++|++
T Consensus 23 ~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~ 102 (201)
T 2ew1_A 23 YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANAL 102 (201)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEE
T ss_pred cccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEE
Confidence 356799999999999999999999998876 45677776654 34444 46899999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcCCCCceEEEEeccccCCCH
Q 029446 89 IYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGL 166 (193)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 166 (193)
++|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.. ..++.. .+ ++..++++++|||++|+|+
T Consensus 103 i~v~D~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~-~~----~~~~~~~~~~~Sa~~g~gv 176 (201)
T 2ew1_A 103 ILTYDITCEESFRCLPEWLREIEQYA-SNKVITVLVGNKIDLAERREVSQQRAE-EF----SEAQDMYYLETSAKESDNV 176 (201)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCSSCHHHHH-HH----HHHHTCCEEECCTTTCTTH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHH-HH----HHHcCCEEEEEeCCCCCCH
Confidence 99999999999999988888776532 3578999999999997532 222222 11 1223457999999999999
Q ss_pred HHHHHHHHHHHHhhhc
Q 029446 167 YEGLDWLASTLKEMRA 182 (193)
Q Consensus 167 ~~~~~~l~~~~~~~~~ 182 (193)
++++++|.+.+.++..
T Consensus 177 ~~l~~~l~~~i~~~~~ 192 (201)
T 2ew1_A 177 EKLFLDLACRLISEAR 192 (201)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999887654
No 37
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.98 E-value=3.9e-32 Score=191.02 Aligned_cols=165 Identities=22% Similarity=0.319 Sum_probs=132.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE--EEEEcC--EEEEEEecCCCCCCHHhHHhhhcCCCEEE
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE--KVQYKN--VIFTVWDVGGQEKLRPLWRHYFNNTDGLI 89 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (193)
++.++|+++|++|+|||||++++.++.+. .+.+|.+.++. .+.... ..+.+||+||++.+...+..+++++|+++
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 87 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGAL 87 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEE
Confidence 46799999999999999999999998876 45566665543 344444 78999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcCCCCceEEEEeccccCCCHH
Q 029446 90 YVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLY 167 (193)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 167 (193)
+|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.. ...+..+. ++..+++++++||++++|++
T Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~gi~ 161 (186)
T 2bme_A 88 LVYDITSRETYNALTNWLTDARMLA-SQNIVIILCGNKKDLDADREVTFLEASRF-----AQENELMFLETSALTGENVE 161 (186)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHH-----HHHTTCEEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECcccccccccCHHHHHHH-----HHHcCCEEEEecCCCCCCHH
Confidence 9999999999999998887775532 2679999999999996532 22222221 12345689999999999999
Q ss_pred HHHHHHHHHHHhhhccCC
Q 029446 168 EGLDWLASTLKEMRAAGY 185 (193)
Q Consensus 168 ~~~~~l~~~~~~~~~~~~ 185 (193)
++++++.+.+.++...+.
T Consensus 162 ~l~~~l~~~~~~~~~~~~ 179 (186)
T 2bme_A 162 EAFVQCARKILNKIESGE 179 (186)
T ss_dssp HHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHhhhcC
Confidence 999999999987765443
No 38
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.98 E-value=8.3e-32 Score=192.25 Aligned_cols=165 Identities=18% Similarity=0.216 Sum_probs=132.4
Q ss_pred hcCCCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE-EEEEc--CEEEEEEecCCCCCCHHhHHhhhcCCCE
Q 029446 12 FFGNSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE-KVQYK--NVIFTVWDVGGQEKLRPLWRHYFNNTDG 87 (193)
Q Consensus 12 ~~~~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~-~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 87 (193)
......++|+++|++|+|||||++++.++.+. .+.+|.+..+. .+... .+.+.+||+||++++...+..+++++|+
T Consensus 9 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 88 (206)
T 2bov_A 9 QNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEG 88 (206)
T ss_dssp --CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSE
T ss_pred CCCCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCE
Confidence 34567799999999999999999999988876 45566665543 34443 3689999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcCCCCceEEEEeccccCCC
Q 029446 88 LIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDG 165 (193)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 165 (193)
+++|+|++++.+++.+..|+..+.......+.|+++|+||+|+.+.. ..++..... +..+++++++||++|.|
T Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~g~g 163 (206)
T 2bov_A 89 FLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRA-----EQWNVNYVETSAKTRAN 163 (206)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHH-----HHHTCEEEEECTTTCTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHH-----HHhCCeEEEEeCCCCCC
Confidence 99999999999999999998888775544689999999999997632 222322211 22345899999999999
Q ss_pred HHHHHHHHHHHHHhhh
Q 029446 166 LYEGLDWLASTLKEMR 181 (193)
Q Consensus 166 i~~~~~~l~~~~~~~~ 181 (193)
+++++++|.+.+.++.
T Consensus 164 i~~l~~~l~~~i~~~~ 179 (206)
T 2bov_A 164 VDKVFFDLMREIRARK 179 (206)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcc
Confidence 9999999999987654
No 39
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.98 E-value=4.6e-32 Score=189.66 Aligned_cols=162 Identities=20% Similarity=0.332 Sum_probs=121.8
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCcc--ccccccceeEEEE--EEc--CEEEEEEecCCCCCCHHhHHhhhcCCCE
Q 029446 14 GNSEMRVVMLGLDAAGKTTILYKLHIGEVL--STVPTIGFNVEKV--QYK--NVIFTVWDVGGQEKLRPLWRHYFNNTDG 87 (193)
Q Consensus 14 ~~~~~~v~v~G~~~~GKssli~~l~~~~~~--~~~~t~~~~~~~~--~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 87 (193)
.+..++|+++|.+|+|||||++++.++.+. .+.+|.+.++... ... .+.+.+||+||++.+...+..+++++|+
T Consensus 7 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 86 (180)
T 2g6b_A 7 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHA 86 (180)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCE
Confidence 357799999999999999999999998875 4567777776532 333 4689999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcCCCCceEEEEeccccCCC
Q 029446 88 LIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT--PMEVCEGLGLFDLKNRKWHIQGTCALKGDG 165 (193)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 165 (193)
+++|+|++++.+++.+..|+..+..... .+.|+++|+||+|+.+... .++..+ + .+..+++++++||+++.|
T Consensus 87 ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~-~----~~~~~~~~~~~Sa~~~~g 160 (180)
T 2g6b_A 87 LLLLYDVTNKASFDNIQAWLTEIHEYAQ-HDVALMLLGNKVDSAHERVVKREDGEK-L----AKEYGLPFMETSAKTGLN 160 (180)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECCSTTSCCCSCHHHHHH-H----HHHHTCCEEECCTTTCTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCcEEEEEECcccCcccccCHHHHHH-H----HHHcCCeEEEEeCCCCCC
Confidence 9999999999999999888888765422 6799999999999986432 222211 1 112345799999999999
Q ss_pred HHHHHHHHHHHHHhhh
Q 029446 166 LYEGLDWLASTLKEMR 181 (193)
Q Consensus 166 i~~~~~~l~~~~~~~~ 181 (193)
+++++++|.+.+.++.
T Consensus 161 i~~l~~~l~~~~~~~~ 176 (180)
T 2g6b_A 161 VDLAFTAIAKELKRRS 176 (180)
T ss_dssp HHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999887544
No 40
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.98 E-value=2.1e-32 Score=189.38 Aligned_cols=158 Identities=24% Similarity=0.331 Sum_probs=127.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccceeEE--EEEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEEE
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHIGEVLS-TVPTIGFNVE--KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLI 89 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (193)
.+.++|+++|++|+|||||++++.++.+.. +.++.+.++. .+.. ....+.+||+||++++...+..+++++|+++
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i 83 (170)
T 1r2q_A 4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAI 83 (170)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEE
Confidence 467999999999999999999999888764 4577776653 3333 3678999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcCCCCceEEEEeccccCCCHH
Q 029446 90 YVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLY 167 (193)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 167 (193)
+|+|++++.+++.+..|+..+.... .++.|+++|+||+|+.+.. ..++..+ + ++..+++++++||++|+|++
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iilv~nK~Dl~~~~~~~~~~~~~-~----~~~~~~~~~~~Sa~~g~gi~ 157 (170)
T 1r2q_A 84 VVYDITNEESFARAKNWVKELQRQA-SPNIVIALSGNKADLANKRAVDFQEAQS-Y----ADDNSLLFMETSAKTSMNVN 157 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHH-H----HHHTTCEEEECCTTTCTTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCccccccCHHHHHH-H----HHHcCCeEEEEeCCCCCCHH
Confidence 9999999999999999888876642 3689999999999987532 2222222 1 12345689999999999999
Q ss_pred HHHHHHHHHHH
Q 029446 168 EGLDWLASTLK 178 (193)
Q Consensus 168 ~~~~~l~~~~~ 178 (193)
+++++|.+.+.
T Consensus 158 ~l~~~i~~~~~ 168 (170)
T 1r2q_A 158 EIFMAIAKKLP 168 (170)
T ss_dssp HHHHHHHHTSC
T ss_pred HHHHHHHHHHh
Confidence 99999988763
No 41
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.98 E-value=9.3e-32 Score=190.35 Aligned_cols=162 Identities=20% Similarity=0.298 Sum_probs=131.2
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEEE--EEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEE
Q 029446 14 GNSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVEK--VQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGL 88 (193)
Q Consensus 14 ~~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~--~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 88 (193)
..+.+||+++|.+|+|||||+++|.+..+. .+.+|.+.++.. +.. ....+.+||+||++++...+..+++++|++
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~v 101 (193)
T 2oil_A 22 YNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGA 101 (193)
T ss_dssp CSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEE
Confidence 356799999999999999999999998876 456777766543 333 457899999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcCCCCceEEEEeccccCCCH
Q 029446 89 IYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGL 166 (193)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 166 (193)
++|+|++++.+++.+..|+..+... ...+.|+++|+||+|+.+.. ..++... + ++..+++++++||++++|+
T Consensus 102 i~v~D~~~~~s~~~~~~~l~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~-~----~~~~~~~~~~~Sa~~~~gi 175 (193)
T 2oil_A 102 LLVFDLTKHQTYAVVERWLKELYDH-AEATIVVMLVGNKSDLSQAREVPTEEARM-F----AENNGLLFLETSALDSTNV 175 (193)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHTT-SCTTCEEEEEEECGGGGGGCCSCHHHHHH-H----HHHTTCEEEEECTTTCTTH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHh-cCCCCeEEEEEECCCcccccccCHHHHHH-H----HHHcCCEEEEEeCCCCCCH
Confidence 9999999999999998888887654 23679999999999997632 2222222 1 1234568999999999999
Q ss_pred HHHHHHHHHHHHhhh
Q 029446 167 YEGLDWLASTLKEMR 181 (193)
Q Consensus 167 ~~~~~~l~~~~~~~~ 181 (193)
++++++|.+.+.++.
T Consensus 176 ~~l~~~l~~~i~~~~ 190 (193)
T 2oil_A 176 ELAFETVLKEIFAKV 190 (193)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999887654
No 42
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.98 E-value=2.3e-32 Score=193.30 Aligned_cols=164 Identities=20% Similarity=0.297 Sum_probs=128.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccceeE--EEEEEc--CEEEEEEecCCCCCCHHhHHhhhcCCCEE
Q 029446 14 GNSEMRVVMLGLDAAGKTTILYKLHIGEVLS-TVPTIGFNV--EKVQYK--NVIFTVWDVGGQEKLRPLWRHYFNNTDGL 88 (193)
Q Consensus 14 ~~~~~~v~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 88 (193)
....+||+++|++|+|||||+++|.++.+.. +.+|.+.++ ..+... .+.+.+||+||++++...+..+++++|++
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 97 (191)
T 2a5j_A 18 GSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGA 97 (191)
T ss_dssp TCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEE
Confidence 3567999999999999999999999988763 456666444 344444 47899999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcCCCCceEEEEeccccCCCH
Q 029446 89 IYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGL 166 (193)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 166 (193)
++|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.. ..++... + ++..+++++++||++++|+
T Consensus 98 i~v~d~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~-~----~~~~~~~~~~~Sa~~~~gi 171 (191)
T 2a5j_A 98 LLVYDITRRETFNHLTSWLEDARQHS-SSNMVIMLIGNKSDLESRRDVKREEGEA-F----AREHGLIFMETSAKTACNV 171 (191)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHH-H----HHHHTCEEEEECTTTCTTH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccCCccccCHHHHHH-H----HHHcCCEEEEEeCCCCCCH
Confidence 99999999999999998888876532 3589999999999997532 2222221 1 1233458999999999999
Q ss_pred HHHHHHHHHHHHhhhcc
Q 029446 167 YEGLDWLASTLKEMRAA 183 (193)
Q Consensus 167 ~~~~~~l~~~~~~~~~~ 183 (193)
++++++|.+.+.++...
T Consensus 172 ~~l~~~l~~~i~~~~~~ 188 (191)
T 2a5j_A 172 EEAFINTAKEIYRKIQQ 188 (191)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999876643
No 43
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.98 E-value=3.7e-32 Score=192.97 Aligned_cols=165 Identities=16% Similarity=0.130 Sum_probs=123.4
Q ss_pred hcCCCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccc--eeEEEEEEc--CEEEEEEecCCCCCCHH-hHHhhhcCC
Q 029446 12 FFGNSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIG--FNVEKVQYK--NVIFTVWDVGGQEKLRP-LWRHYFNNT 85 (193)
Q Consensus 12 ~~~~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~--~~~~~~~~~--~~~~~i~D~~g~~~~~~-~~~~~~~~~ 85 (193)
......+||+++|++|||||||+++|.+.... ...++.+ .....+..+ .+.+.+||++|++.+.. .+..+++++
T Consensus 18 ~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~ 97 (195)
T 3cbq_A 18 GQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTG 97 (195)
T ss_dssp ----CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHC
T ss_pred CCCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccC
Confidence 34567799999999999999999999764332 2223333 223334443 57889999999998765 778888999
Q ss_pred CEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcCCCCceEEEEeccccC
Q 029446 86 DGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKG 163 (193)
Q Consensus 86 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (193)
|++++|||++++.+|+.+..|+..+.......+.|+++|+||+|+.+.. ..++..+ + ++..++++++|||++|
T Consensus 98 d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~-~----a~~~~~~~~e~Sa~~~ 172 (195)
T 3cbq_A 98 DAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRH-L----AGTLSCKHIETSAALH 172 (195)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHH-H----HHHTTCEEEEEBTTTT
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHH-H----HHHhCCEEEEEcCCCC
Confidence 9999999999999999999999888764333579999999999997642 2222221 1 1223458999999999
Q ss_pred CCHHHHHHHHHHHHHhhh
Q 029446 164 DGLYEGLDWLASTLKEMR 181 (193)
Q Consensus 164 ~gi~~~~~~l~~~~~~~~ 181 (193)
.|++++|++|.+.+.+..
T Consensus 173 ~~v~~lf~~l~~~i~~~~ 190 (195)
T 3cbq_A 173 HNTRELFEGAVRQIRLRR 190 (195)
T ss_dssp BSHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHHhc
Confidence 999999999999986544
No 44
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.98 E-value=9.8e-32 Score=191.67 Aligned_cols=163 Identities=18% Similarity=0.318 Sum_probs=130.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEEE--EEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEEE
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVEK--VQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLI 89 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~--~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (193)
+..+||+++|++|+|||||+++|.+..+. .+.+|.+.++.. +.. ....+.+||+||++++...+..+++++|+++
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 85 (203)
T 1zbd_A 6 DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFI 85 (203)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEE
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEE
Confidence 45789999999999999999999998876 456777766543 333 3578999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcCCCCceEEEEeccccCCCHH
Q 029446 90 YVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT--PMEVCEGLGLFDLKNRKWHIQGTCALKGDGLY 167 (193)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 167 (193)
+|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+... .++..+ + ++..+++++++||++|.|++
T Consensus 86 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~-~----~~~~~~~~~~~Sa~~~~gi~ 159 (203)
T 1zbd_A 86 LMYDITNEESFNAVQDWSTQIKTYS-WDNAQVLLVGNKCDMEDERVVSSERGRQ-L----ADHLGFEFFEASAKDNINVK 159 (203)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHS-CSSCEEEEEEECTTCTTSCCSCHHHHHH-H----HHHHTCEEEECBTTTTBSSH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccCcccccCHHHHHH-H----HHHCCCeEEEEECCCCCCHH
Confidence 9999999999999998888876532 35789999999999976422 222211 1 11234589999999999999
Q ss_pred HHHHHHHHHHHhhhcc
Q 029446 168 EGLDWLASTLKEMRAA 183 (193)
Q Consensus 168 ~~~~~l~~~~~~~~~~ 183 (193)
+++++|.+.+.++...
T Consensus 160 ~l~~~l~~~i~~~~~~ 175 (203)
T 1zbd_A 160 QTFERLVDVICEKMSE 175 (203)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999988765433
No 45
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.98 E-value=5.6e-32 Score=189.38 Aligned_cols=163 Identities=21% Similarity=0.288 Sum_probs=128.3
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccceeEE--EEEEc--CEEEEEEecCCCCCCHHhHHhhhcCCCE
Q 029446 13 FGNSEMRVVMLGLDAAGKTTILYKLHIGEVLS-TVPTIGFNVE--KVQYK--NVIFTVWDVGGQEKLRPLWRHYFNNTDG 87 (193)
Q Consensus 13 ~~~~~~~v~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~--~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 87 (193)
.....+||+++|++|+|||||++++.+..+.. +.+|.+.++. .+... ...+.+||+||++++...+..+++++|+
T Consensus 8 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 87 (181)
T 2efe_B 8 NKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 87 (181)
T ss_dssp --CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSE
T ss_pred CCccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCE
Confidence 34577999999999999999999999988764 4566665543 34343 5789999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcCCCCceEEEEeccccCCC
Q 029446 88 LIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT--PMEVCEGLGLFDLKNRKWHIQGTCALKGDG 165 (193)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 165 (193)
+++|+|++++.+++.+..|+..+.... .++.|+++|+||+|+.+... .++..+.. +..+++++++||++|+|
T Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~g~g 161 (181)
T 2efe_B 88 AIIVFDVTNQASFERAKKWVQELQAQG-NPNMVMALAGNKSDLLDARKVTAEDAQTYA-----QENGLFFMETSAKTATN 161 (181)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHHH-----HHTTCEEEECCSSSCTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCcccccccCCHHHHHHHH-----HHcCCEEEEEECCCCCC
Confidence 999999999999999999988887643 35899999999999975422 22322211 22345899999999999
Q ss_pred HHHHHHHHHHHHHhhh
Q 029446 166 LYEGLDWLASTLKEMR 181 (193)
Q Consensus 166 i~~~~~~l~~~~~~~~ 181 (193)
+++++++|.+.+.+..
T Consensus 162 i~~l~~~l~~~~~~~~ 177 (181)
T 2efe_B 162 VKEIFYEIARRLPRVQ 177 (181)
T ss_dssp HHHHHHHHHHTCC---
T ss_pred HHHHHHHHHHHHHhcC
Confidence 9999999998875543
No 46
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.98 E-value=7.2e-32 Score=189.56 Aligned_cols=163 Identities=18% Similarity=0.237 Sum_probs=131.1
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE-EEEEc--CEEEEEEecCCCCCCHHhHHhhhcCCCEEE
Q 029446 14 GNSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE-KVQYK--NVIFTVWDVGGQEKLRPLWRHYFNNTDGLI 89 (193)
Q Consensus 14 ~~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~-~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (193)
....+||+++|++|+|||||++++.+..+. .+.+|.+..+. .+... .+.+.+||+||++++...+..+++++|+++
T Consensus 15 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 94 (187)
T 2a9k_A 15 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL 94 (187)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEEE
Confidence 346799999999999999999999988876 44566665553 23443 368999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCcCCCCceEEEEeccccCCCHH
Q 029446 90 YVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA--MTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLY 167 (193)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 167 (193)
+|+|++++.+++.+..|+..+.......+.|+++|+||+|+.+. ...++..+.. +..+++++++||+++.|++
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~ 169 (187)
T 2a9k_A 95 CVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRA-----EQWNVNYVETSAKTRANVD 169 (187)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHH-----HHTTCEEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHH-----HHcCCeEEEeCCCCCCCHH
Confidence 99999999999999999888877544458999999999998763 2223332222 2344589999999999999
Q ss_pred HHHHHHHHHHHhhh
Q 029446 168 EGLDWLASTLKEMR 181 (193)
Q Consensus 168 ~~~~~l~~~~~~~~ 181 (193)
+++++|.+.+.+++
T Consensus 170 ~l~~~l~~~i~~~~ 183 (187)
T 2a9k_A 170 KVFFDLMREIRARK 183 (187)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999987655
No 47
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.98 E-value=2.4e-32 Score=190.73 Aligned_cols=163 Identities=18% Similarity=0.321 Sum_probs=127.3
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCcc-cccccccee--EEEEEEcC---EEEEEEecCCCCCCHHhHHhhhcCCCE
Q 029446 14 GNSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFN--VEKVQYKN---VIFTVWDVGGQEKLRPLWRHYFNNTDG 87 (193)
Q Consensus 14 ~~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~--~~~~~~~~---~~~~i~D~~g~~~~~~~~~~~~~~~d~ 87 (193)
..+.++|+++|++|+|||||++++.++.+. .+.+|.+.+ ...+...+ ..+.+||+||++.+...+..+++++|+
T Consensus 3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 82 (178)
T 2hxs_A 3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG 82 (178)
T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence 357899999999999999999999998876 445777644 34555544 899999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHcCCC--CCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcCCCCceEEEEeccccC
Q 029446 88 LIYVVDSLDRERIGKAKQEFQAIIKDPF--MLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKG 163 (193)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (193)
+++|+|++++.+++.+..|+..+..... ....|+++|+||+|+.+.. ..++..+ + ++..+++++++||++|
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~-~----~~~~~~~~~~~Sa~~~ 157 (178)
T 2hxs_A 83 VLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLR-F----CQENGFSSHFVSAKTG 157 (178)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHH-H----HHHHTCEEEEECTTTC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHH-H----HHHcCCcEEEEeCCCC
Confidence 9999999999999998888777654210 1234489999999997532 2222221 1 1123458999999999
Q ss_pred CCHHHHHHHHHHHHHhhh
Q 029446 164 DGLYEGLDWLASTLKEMR 181 (193)
Q Consensus 164 ~gi~~~~~~l~~~~~~~~ 181 (193)
+|+++++++|.+.+.+..
T Consensus 158 ~gi~~l~~~l~~~~~~~~ 175 (178)
T 2hxs_A 158 DSVFLCFQKVAAEILGIK 175 (178)
T ss_dssp TTHHHHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHHHHhhh
Confidence 999999999999886554
No 48
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.98 E-value=9.6e-32 Score=186.20 Aligned_cols=161 Identities=25% Similarity=0.394 Sum_probs=123.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE--EEEEc--CEEEEEEecCCCCCCHHhHHhhhcCCCEEEE
Q 029446 16 SEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE--KVQYK--NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIY 90 (193)
Q Consensus 16 ~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 90 (193)
..++|+++|++|+|||||++++.+..+. .+.+|.+.++. .+... .+.+.+||+||++++...+..+++++|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence 5689999999999999999999998875 44566665543 34433 4789999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHH
Q 029446 91 VVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGL 170 (193)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~ 170 (193)
|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.....+..+.+. +..+++++++||++|.|+++++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~gv~~l~ 156 (170)
T 1g16_A 82 VYDITDERTFTNIKQWFKTVNEHA-NDEAQLLLVGNKSDMETRVVTADQGEALA----KELGIPFIESSAKNDDNVNEIF 156 (170)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCTTCCSCHHHHHHHH----HHHTCCEEECBTTTTBSHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCCcCccCHHHHHHHH----HHcCCeEEEEECCCCCCHHHHH
Confidence 999999999999988888876542 25789999999999954322222222221 1234579999999999999999
Q ss_pred HHHHHHHHhhh
Q 029446 171 DWLASTLKEMR 181 (193)
Q Consensus 171 ~~l~~~~~~~~ 181 (193)
++|.+.+.++.
T Consensus 157 ~~l~~~~~~~~ 167 (170)
T 1g16_A 157 FTLAKLIQEKI 167 (170)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHHHh
Confidence 99999987654
No 49
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.98 E-value=6.4e-32 Score=190.66 Aligned_cols=163 Identities=18% Similarity=0.307 Sum_probs=130.1
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE--EEEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCE
Q 029446 13 FGNSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE--KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDG 87 (193)
Q Consensus 13 ~~~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 87 (193)
..++.+||+++|.+|+|||||+++|.+..+. .+.+|.+.++. .+.. ....+.+||+||++.+...+..+++++|+
T Consensus 18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 97 (189)
T 2gf9_A 18 GSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMG 97 (189)
T ss_dssp TCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSE
T ss_pred ccCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCE
Confidence 3456799999999999999999999998876 45677776654 3333 35789999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcCCCCceEEEEeccccCCC
Q 029446 88 LIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT--PMEVCEGLGLFDLKNRKWHIQGTCALKGDG 165 (193)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 165 (193)
+++|+|++++.+++.+..|+..+... ...+.|+++|+||+|+.+... .++..+ + ++..+++++++||++|.|
T Consensus 98 ii~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~-~----~~~~~~~~~~~Sa~~g~g 171 (189)
T 2gf9_A 98 FLLMYDIANQESFAAVQDWATQIKTY-SWDNAQVILVGNKCDLEDERVVPAEDGRR-L----ADDLGFEFFEASAKENIN 171 (189)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHH-H----HHHHTCEEEECBTTTTBS
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcccccccCCCHHHHHH-H----HHHcCCeEEEEECCCCCC
Confidence 99999999999999998888887653 235799999999999876322 222211 1 112345899999999999
Q ss_pred HHHHHHHHHHHHHhhh
Q 029446 166 LYEGLDWLASTLKEMR 181 (193)
Q Consensus 166 i~~~~~~l~~~~~~~~ 181 (193)
+++++++|.+.+.++.
T Consensus 172 i~~l~~~l~~~i~~~~ 187 (189)
T 2gf9_A 172 VKQVFERLVDVICEKM 187 (189)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999987653
No 50
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.98 E-value=2.1e-32 Score=194.26 Aligned_cols=168 Identities=17% Similarity=0.219 Sum_probs=128.4
Q ss_pred HhhhhcCCCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEEE-EEE--cCEEEEEEecCCCCCCHHhHHhhhc
Q 029446 8 LFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVEK-VQY--KNVIFTVWDVGGQEKLRPLWRHYFN 83 (193)
Q Consensus 8 ~~~~~~~~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~-~~~--~~~~~~i~D~~g~~~~~~~~~~~~~ 83 (193)
++.+......+||+++|.+|+|||||++++.++.+. .+.+|.+..+.. +.. ....+.+||+||++. ...+..+++
T Consensus 19 ~~~~~~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~ 97 (196)
T 2atv_A 19 YFQSMAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED-TIQREGHMR 97 (196)
T ss_dssp --------CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-CHHHHHHHH
T ss_pred chhccCCCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-ccchhhhhc
Confidence 344455567899999999999999999999998876 456777766532 333 357899999999998 778888999
Q ss_pred CCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCcCCCCceEEEEeccc
Q 029446 84 NTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA--MTPMEVCEGLGLFDLKNRKWHIQGTCAL 161 (193)
Q Consensus 84 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (193)
++|++++|+|++++.+++.+..|+..+.......+.|+++|+||+|+.+. ...++..+ + ++..+++++++||+
T Consensus 98 ~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~-~----~~~~~~~~~~~Sa~ 172 (196)
T 2atv_A 98 WGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEK-L----ATELACAFYECSAC 172 (196)
T ss_dssp HCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHH-H----HHHHTSEEEECCTT
T ss_pred cCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHH-H----HHHhCCeEEEECCC
Confidence 99999999999999999999888888766433468999999999999763 22222221 1 11234589999999
Q ss_pred cCC-CHHHHHHHHHHHHHhhh
Q 029446 162 KGD-GLYEGLDWLASTLKEMR 181 (193)
Q Consensus 162 ~~~-gi~~~~~~l~~~~~~~~ 181 (193)
+|. |+++++++|.+.+.++.
T Consensus 173 ~g~~gi~~l~~~l~~~i~~~~ 193 (196)
T 2atv_A 173 TGEGNITEIFYELCREVRRRR 193 (196)
T ss_dssp TCTTCHHHHHHHHHHHHHHHH
T ss_pred cCCcCHHHHHHHHHHHHHhhc
Confidence 999 99999999999987654
No 51
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.98 E-value=5.4e-32 Score=187.46 Aligned_cols=159 Identities=15% Similarity=0.123 Sum_probs=115.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-c--ccccceeEEEEEEc--CEEEEEEecCCCCCCHH-hHHhhhcCCCEEEE
Q 029446 17 EMRVVMLGLDAAGKTTILYKLHIGEVLS-T--VPTIGFNVEKVQYK--NVIFTVWDVGGQEKLRP-LWRHYFNNTDGLIY 90 (193)
Q Consensus 17 ~~~v~v~G~~~~GKssli~~l~~~~~~~-~--~~t~~~~~~~~~~~--~~~~~i~D~~g~~~~~~-~~~~~~~~~d~~i~ 90 (193)
.+||+++|++|+|||||++++.+..... . .++.......+... .+.+.+||+||++++.. .+..+++++|++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 4799999999999999999998766542 2 23333333444443 47889999999998876 67777889999999
Q ss_pred EEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcCCCCceEEEEeccccCCCHHH
Q 029446 91 VVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYE 168 (193)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 168 (193)
|+|++++++++.+..|+..+.......+.|+++|+||+|+.+.. ..++..+ + ++..+++++++||++++|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~-~----~~~~~~~~~~~Sa~~~~~v~~ 156 (169)
T 3q85_A 82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRH-L----AGTLSCKHIETSAALHHNTRE 156 (169)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHH-H----HHHTTCEEEECBTTTTBSHHH
T ss_pred EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHH-H----HHHcCCcEEEecCccCCCHHH
Confidence 99999999999999999998875544589999999999987432 2222221 1 123355899999999999999
Q ss_pred HHHHHHHHHHhh
Q 029446 169 GLDWLASTLKEM 180 (193)
Q Consensus 169 ~~~~l~~~~~~~ 180 (193)
+|+++.+.+..+
T Consensus 157 l~~~l~~~i~~~ 168 (169)
T 3q85_A 157 LFEGAVRQIRLR 168 (169)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhc
Confidence 999999988654
No 52
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.97 E-value=1.5e-32 Score=197.64 Aligned_cols=163 Identities=16% Similarity=0.180 Sum_probs=126.2
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEEE---EEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEE
Q 029446 13 FGNSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVEK---VQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGL 88 (193)
Q Consensus 13 ~~~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~---~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 88 (193)
.....+||+++|.+|+|||||+++|.++.+. .+.+|.+..+.. +....+.+.+|||+|++++...+..+++++|++
T Consensus 23 ~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 102 (214)
T 3q3j_B 23 PVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAV 102 (214)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred CccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEE
Confidence 4456799999999999999999999998877 456788776642 223468899999999999999999999999999
Q ss_pred EEEEECCChhhHHH-HHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--------------CCHhHHHhhhCCCcCCCCce
Q 029446 89 IYVVDSLDRERIGK-AKQEFQAIIKDPFMLNSVILVFANKQDMKGA--------------MTPMEVCEGLGLFDLKNRKW 153 (193)
Q Consensus 89 i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~--------------~~~~~~~~~~~~~~~~~~~~ 153 (193)
++|||++++.+++. +..|+..+.... .+.|+++|+||+|+.+. ...++... + ++..++
T Consensus 103 i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~-~----~~~~~~ 175 (214)
T 3q3j_B 103 LLCFDISRPETVDSALKKWRTEILDYC--PSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCA-I----AKQLGA 175 (214)
T ss_dssp EEEEETTCTHHHHHHHTHHHHHHHHHC--TTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHH-H----HHHHTC
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHH-H----HHHcCC
Confidence 99999999999999 567777765532 58999999999999752 22222111 1 123345
Q ss_pred -EEEEeccccCCC-HHHHHHHHHHHHHhhhc
Q 029446 154 -HIQGTCALKGDG-LYEGLDWLASTLKEMRA 182 (193)
Q Consensus 154 -~~~~~Sa~~~~g-i~~~~~~l~~~~~~~~~ 182 (193)
++++|||++|.| ++++|+++.+.+.+...
T Consensus 176 ~~~~e~SA~~g~g~v~~lf~~l~~~~~~~~~ 206 (214)
T 3q3j_B 176 EIYLEGSAFTSEKSIHSIFRTASMLCLNKPS 206 (214)
T ss_dssp SEEEECCTTTCHHHHHHHHHHHHHHHHC---
T ss_pred CEEEEeccCCCcccHHHHHHHHHHHHhccCc
Confidence 899999999998 99999999999876653
No 53
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.97 E-value=2.8e-32 Score=188.95 Aligned_cols=159 Identities=23% Similarity=0.316 Sum_probs=121.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEEE--EEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEEE
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVEK--VQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLI 89 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~--~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (193)
++.++|+++|++|+|||||++++.+..+. .+.+|.+.++.. +.. ..+.+.+||+||++++...+..+++++|+++
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 83 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAI 83 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEE
Confidence 56799999999999999999999988876 456777766543 333 3468999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcCCCCceEEEEeccccCCCHH
Q 029446 90 YVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLY 167 (193)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 167 (193)
+|+|++++.+++.+..|+..+... ...+.|+++|+||+|+.+.. ..++..+ + ++..+++++++||++|+|++
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~-~----~~~~~~~~~~~Sa~~~~gi~ 157 (170)
T 1z08_A 84 LVYDITDEDSFQKVKNWVKELRKM-LGNEICLCIVGNKIDLEKERHVSIQEAES-Y----AESVGAKHYHTSAKQNKGIE 157 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHH-HGGGSEEEEEEECGGGGGGCCSCHHHHHH-H----HHHTTCEEEEEBTTTTBSHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-cCCCCeEEEEEECcccccccccCHHHHHH-H----HHHcCCeEEEecCCCCCCHH
Confidence 999999999999998888776542 12478999999999997632 2222222 1 12234689999999999999
Q ss_pred HHHHHHHHHHHh
Q 029446 168 EGLDWLASTLKE 179 (193)
Q Consensus 168 ~~~~~l~~~~~~ 179 (193)
+++++|.+.+.+
T Consensus 158 ~l~~~l~~~~~~ 169 (170)
T 1z08_A 158 ELFLDLCKRMIE 169 (170)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhh
Confidence 999999998754
No 54
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.97 E-value=5.5e-32 Score=189.21 Aligned_cols=162 Identities=19% Similarity=0.321 Sum_probs=129.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE--EEEEcC--EEEEEEecCCCCCCHHhHHhhhcCCCEE
Q 029446 14 GNSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE--KVQYKN--VIFTVWDVGGQEKLRPLWRHYFNNTDGL 88 (193)
Q Consensus 14 ~~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 88 (193)
.+..++|+++|++|+|||||++++.+..+. .+.++.+.++. .+...+ ..+.+||+||++.+...+..+++++|++
T Consensus 6 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 85 (181)
T 3tw8_B 6 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGV 85 (181)
T ss_dssp CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEE
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEE
Confidence 357799999999999999999999998876 45566665543 445555 7899999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcCCCCceEEEEeccccCCCH
Q 029446 89 IYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT--PMEVCEGLGLFDLKNRKWHIQGTCALKGDGL 166 (193)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 166 (193)
++|+|++++.+++.+..|+..+.... .+.|+++|+||+|+.+... ..+... + ....+++++++||++|.|+
T Consensus 86 i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~-~----~~~~~~~~~~~Sa~~~~gi 158 (181)
T 3tw8_B 86 IVVYDVTSAESFVNVKRWLHEINQNC--DDVCRILVGNKNDDPERKVVETEDAYK-F----AGQMGIQLFETSAKENVNV 158 (181)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHC--TTSEEEEEEECTTCGGGCCSCHHHHHH-H----HHHHTCCEEECBTTTTBSH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECCCCchhcccCHHHHHH-H----HHHcCCeEEEEECCCCCCH
Confidence 99999999999999998888886642 5799999999999876422 122111 1 1123347999999999999
Q ss_pred HHHHHHHHHHHHhhhc
Q 029446 167 YEGLDWLASTLKEMRA 182 (193)
Q Consensus 167 ~~~~~~l~~~~~~~~~ 182 (193)
++++++|.+.+.+...
T Consensus 159 ~~l~~~l~~~~~~~~~ 174 (181)
T 3tw8_B 159 EEMFNCITELVLRAKK 174 (181)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999999887654
No 55
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=9.5e-33 Score=195.27 Aligned_cols=162 Identities=19% Similarity=0.322 Sum_probs=129.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE--EEEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEEE
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE--KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLI 89 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (193)
+..+||+++|.+|+|||||+++|.++.+. .+.+|.+.++. .+.. ..+.+.+||+||++.+...+..+++++|+++
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 100 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFI 100 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEE
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEE
Confidence 46799999999999999999999998865 34466654443 3332 5789999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcCCCCceEEEEeccccCCCHH
Q 029446 90 YVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLY 167 (193)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 167 (193)
+|+|++++.+++.+..|+..+... ...+.|+++|+||+|+.+.. ..++. +.+ .+..+++++++||++|.|++
T Consensus 101 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~-~~~----~~~~~~~~~~~Sa~~~~gi~ 174 (191)
T 3dz8_A 101 LMYDITNEESFNAVQDWATQIKTY-SWDNAQVILVGNKCDMEEERVVPTEKG-QLL----AEQLGFDFFEASAKENISVR 174 (191)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHH-HHH----HHHHTCEEEECBTTTTBSHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECCCCccccccCHHHH-HHH----HHHcCCeEEEEECCCCCCHH
Confidence 999999999999999988887653 33689999999999986532 22221 111 12234589999999999999
Q ss_pred HHHHHHHHHHHhhhc
Q 029446 168 EGLDWLASTLKEMRA 182 (193)
Q Consensus 168 ~~~~~l~~~~~~~~~ 182 (193)
+++++|.+.+.++..
T Consensus 175 ~l~~~l~~~i~~~~~ 189 (191)
T 3dz8_A 175 QAFERLVDAICDKMS 189 (191)
T ss_dssp HHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999999877653
No 56
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=5.8e-32 Score=191.40 Aligned_cols=161 Identities=19% Similarity=0.247 Sum_probs=130.1
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEEEEE--E--cCEEEEEEecCCCCCCHHhHHhhhcCCCE
Q 029446 13 FGNSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVEKVQ--Y--KNVIFTVWDVGGQEKLRPLWRHYFNNTDG 87 (193)
Q Consensus 13 ~~~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~~~--~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 87 (193)
..++.+||+++|.+|+|||||++++.+..+. .+.++.+.++.... . ....+.+||+||++++...+..+++++|+
T Consensus 19 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 98 (192)
T 2fg5_A 19 SAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAA 98 (192)
T ss_dssp --CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSE
T ss_pred ccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCE
Confidence 3357899999999999999999999998876 56788887765432 2 46789999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCcCCCCceEEEEeccccCCC
Q 029446 88 LIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA--MTPMEVCEGLGLFDLKNRKWHIQGTCALKGDG 165 (193)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 165 (193)
+++|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+. ...++..+.. +..+++++++||+++.|
T Consensus 99 iilV~d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~g 172 (192)
T 2fg5_A 99 AVIVYDITKQDSFYTLKKWVKELKEHG-PENIVMAIAGNKCDLSDIREVPLKDAKEYA-----ESIGAIVVETSAKNAIN 172 (192)
T ss_dssp EEEEEETTCTHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHH-----HTTTCEEEECBTTTTBS
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECcccccccccCHHHHHHHH-----HHcCCEEEEEeCCCCcC
Confidence 999999999999999988888876542 357999999999999752 2223332221 23456899999999999
Q ss_pred HHHHHHHHHHHHHh
Q 029446 166 LYEGLDWLASTLKE 179 (193)
Q Consensus 166 i~~~~~~l~~~~~~ 179 (193)
+++++++|.+.+.+
T Consensus 173 i~~l~~~l~~~i~~ 186 (192)
T 2fg5_A 173 IEELFQGISRQIPP 186 (192)
T ss_dssp HHHHHHHHHHTCC-
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999987754
No 57
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.97 E-value=3.7e-32 Score=187.57 Aligned_cols=159 Identities=19% Similarity=0.258 Sum_probs=126.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeE-EEEEEc--CEEEEEEecCCCCCCHHhHHhhhcCCCEEEEE
Q 029446 16 SEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNV-EKVQYK--NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYV 91 (193)
Q Consensus 16 ~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~-~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 91 (193)
+.++|+++|++|+|||||++++.++.+. .+.+|.+... ..+... ...+.+||+||++++...+..+++++|++++|
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV 81 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence 4689999999999999999999988876 3455655443 233443 46699999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcCCCCceEEEEeccccCCCHHHH
Q 029446 92 VDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT--PMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEG 169 (193)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~ 169 (193)
+|++++.+++.+..|+..+.......+.|+++|+||+|+.+... .++.. .+ .+..+++++++||++|.|++++
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~-~~----~~~~~~~~~~~Sa~~~~gi~~l 156 (167)
T 1kao_A 82 YSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGR-AL----AEEWGCPFMETSAKSKTMVDEL 156 (167)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHH-HH----HHHHTSCEEEECTTCHHHHHHH
T ss_pred EeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHH-HH----HHHhCCCEEEecCCCCcCHHHH
Confidence 99999999999999988887754446899999999999865322 22211 11 1122447999999999999999
Q ss_pred HHHHHHHHHh
Q 029446 170 LDWLASTLKE 179 (193)
Q Consensus 170 ~~~l~~~~~~ 179 (193)
+++|.+.+.+
T Consensus 157 ~~~l~~~~~~ 166 (167)
T 1kao_A 157 FAEIVRQMNY 166 (167)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 9999988753
No 58
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.97 E-value=7.4e-31 Score=183.02 Aligned_cols=163 Identities=17% Similarity=0.238 Sum_probs=127.2
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE--EEEEcC--EEEEEEecCCCCCCHHhHHhhhcCCCEE
Q 029446 14 GNSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE--KVQYKN--VIFTVWDVGGQEKLRPLWRHYFNNTDGL 88 (193)
Q Consensus 14 ~~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 88 (193)
....++|+++|++|+|||||++++.++.+. .+.+|.+.++. .+...+ +.+.+||+||++++...+..+++++|++
T Consensus 4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 83 (177)
T 1wms_A 4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCC 83 (177)
T ss_dssp CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEE
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEE
Confidence 346799999999999999999999988876 45677776654 344443 6899999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHcC---CCCCCCeEEEEEeCCCCCCCC-CHhHHHhhhCCCcCCCCceEEEEeccccCC
Q 029446 89 IYVVDSLDRERIGKAKQEFQAIIKD---PFMLNSVILVFANKQDMKGAM-TPMEVCEGLGLFDLKNRKWHIQGTCALKGD 164 (193)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~---~~~~~~p~ivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (193)
++|+|++++.+++.+..|+..+... ....+.|+++|+||+|+.+.. ..++..+... ...+++++++||++|.
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~ 159 (177)
T 1wms_A 84 LLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCR----DNGDYPYFETSAKDAT 159 (177)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHH----HTTCCCEEECCTTTCT
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHH----hcCCceEEEEeCCCCC
Confidence 9999999999999998888777542 123578999999999997432 2233322211 1334579999999999
Q ss_pred CHHHHHHHHHHHHHhh
Q 029446 165 GLYEGLDWLASTLKEM 180 (193)
Q Consensus 165 gi~~~~~~l~~~~~~~ 180 (193)
|+++++++|.+.+.++
T Consensus 160 gi~~l~~~l~~~~~~~ 175 (177)
T 1wms_A 160 NVAAAFEEAVRRVLAT 175 (177)
T ss_dssp THHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhh
Confidence 9999999999988653
No 59
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.97 E-value=2.1e-32 Score=197.08 Aligned_cols=164 Identities=21% Similarity=0.364 Sum_probs=130.5
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE--EEEEc------------CEEEEEEecCCCCCCHHhH
Q 029446 14 GNSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE--KVQYK------------NVIFTVWDVGGQEKLRPLW 78 (193)
Q Consensus 14 ~~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~~------------~~~~~i~D~~g~~~~~~~~ 78 (193)
.++.+||+++|.+|+|||||+++|.+..+. .+.+|.+.++. .+.+. ...+.+||+||++++...+
T Consensus 22 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~ 101 (217)
T 2f7s_A 22 YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLT 101 (217)
T ss_dssp CSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHH
T ss_pred cceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHH
Confidence 356799999999999999999999998876 34567665543 23332 5789999999999999999
Q ss_pred HhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcCCCCceEEE
Q 029446 79 RHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT--PMEVCEGLGLFDLKNRKWHIQ 156 (193)
Q Consensus 79 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~ 156 (193)
..+++++|++++|+|++++.+++.+..|+..+.......+.|+++|+||+|+.+... .++..+ +. +..+++++
T Consensus 102 ~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~-~~----~~~~~~~~ 176 (217)
T 2f7s_A 102 TAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARE-LA----DKYGIPYF 176 (217)
T ss_dssp HHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHH-HH----HHTTCCEE
T ss_pred HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHH-HH----HHCCCcEE
Confidence 999999999999999999999999988888776544336899999999999976322 222221 11 12345799
Q ss_pred EeccccCCCHHHHHHHHHHHHHhhhc
Q 029446 157 GTCALKGDGLYEGLDWLASTLKEMRA 182 (193)
Q Consensus 157 ~~Sa~~~~gi~~~~~~l~~~~~~~~~ 182 (193)
+|||++++|+++++++|.+.+.++..
T Consensus 177 ~~Sa~~g~gi~~l~~~l~~~i~~~~~ 202 (217)
T 2f7s_A 177 ETSAATGQNVEKAVETLLDLIMKRME 202 (217)
T ss_dssp EEBTTTTBTHHHHHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHhh
Confidence 99999999999999999998876543
No 60
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.97 E-value=2.8e-31 Score=185.45 Aligned_cols=160 Identities=11% Similarity=0.126 Sum_probs=122.3
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccccccccceeEE-EEEEc--CEEEEEEecCCCCCCHHhHHhhhcCCCEEEE
Q 029446 14 GNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVE-KVQYK--NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIY 90 (193)
Q Consensus 14 ~~~~~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~-~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 90 (193)
....+||+++|++|+|||||+++|.++.+..+.+|.+..+. .+... .+.+.+|||||+++ ..+++++|++++
T Consensus 4 ~~~~~ki~~vG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~il 78 (178)
T 2iwr_A 4 SIPELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVIF 78 (178)
T ss_dssp CCCEEEEEEECCGGGCHHHHHHHHHHSCCCCCSSCSSSEEEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEEE
Confidence 35689999999999999999999999988877778776543 33343 47899999999987 456788999999
Q ss_pred EEECCChhhHHHHHHHHHHHHc--CCCCCCCeEEEEEeCCCCCC----CCCHhHHHhhhCCCcCCCCceEEEEeccccCC
Q 029446 91 VVDSLDRERIGKAKQEFQAIIK--DPFMLNSVILVFANKQDMKG----AMTPMEVCEGLGLFDLKNRKWHIQGTCALKGD 164 (193)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~--~~~~~~~p~ivv~nK~Dl~~----~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (193)
|||++++.+++.+..|+..+.. .....+.|+++|+||+|+.+ ....++..+... ...+++++++||++|+
T Consensus 79 v~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~----~~~~~~~~~~Sa~~~~ 154 (178)
T 2iwr_A 79 VFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXA----DMKRCSYYETXATYGL 154 (178)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHH----HHSSEEEEEEBTTTTB
T ss_pred EEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHH----hhcCCeEEEEeccccC
Confidence 9999999999999886544432 22235799999999999842 122222222110 0124689999999999
Q ss_pred CHHHHHHHHHHHHHhhhc
Q 029446 165 GLYEGLDWLASTLKEMRA 182 (193)
Q Consensus 165 gi~~~~~~l~~~~~~~~~ 182 (193)
|++++|++|.+.+.+...
T Consensus 155 ~i~~lf~~l~~~~~~~~~ 172 (178)
T 2iwr_A 155 NVDRVFQEVAQKVVTLRK 172 (178)
T ss_dssp THHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHh
Confidence 999999999999876653
No 61
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.97 E-value=9.5e-32 Score=186.20 Aligned_cols=159 Identities=21% Similarity=0.281 Sum_probs=127.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEEE--EEEc--CEEEEEEecCCCCCCHHhHHhhhcCCCEEE
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVEK--VQYK--NVIFTVWDVGGQEKLRPLWRHYFNNTDGLI 89 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~--~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (193)
.+.++|+++|++|+|||||++++.+..+. .+.++.+.++.. +... ...+.+||+||++++...+..+++++|+++
T Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i 83 (170)
T 1z0j_A 4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI 83 (170)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEE
Confidence 45799999999999999999999998865 456777766543 3333 478999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH-hHHHhhhCCCcCCCCceEEEEeccccCCCHHH
Q 029446 90 YVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP-MEVCEGLGLFDLKNRKWHIQGTCALKGDGLYE 168 (193)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 168 (193)
+|+|++++.+++.+..|+..+... ..+..|+++|+||+|+.+.... .+..+.+. +..+++++++||+++.|+++
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~----~~~~~~~~~~Sa~~~~~i~~ 158 (170)
T 1z0j_A 84 IVYDITKEETFSTLKNWVRELRQH-GPPSIVVAIAGNKCDLTDVREVMERDAKDYA----DSIHAIFVETSAKNAININE 158 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHH-SCTTSEEEEEEECTTCGGGCCSCHHHHHHHH----HHTTCEEEECBTTTTBSHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEECCccccccccCHHHHHHHH----HHcCCEEEEEeCCCCcCHHH
Confidence 999999999999998888877653 3368999999999999764221 22222221 23346899999999999999
Q ss_pred HHHHHHHHHH
Q 029446 169 GLDWLASTLK 178 (193)
Q Consensus 169 ~~~~l~~~~~ 178 (193)
++++|.+.+.
T Consensus 159 l~~~i~~~i~ 168 (170)
T 1z0j_A 159 LFIEISRRIP 168 (170)
T ss_dssp HHHHHHHHCC
T ss_pred HHHHHHHHHh
Confidence 9999998764
No 62
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.97 E-value=3.3e-32 Score=192.09 Aligned_cols=164 Identities=20% Similarity=0.343 Sum_probs=124.9
Q ss_pred hcCCCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE--EEEEc--CEEEEEEecCCCCCCH-HhHHhhhcCC
Q 029446 12 FFGNSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE--KVQYK--NVIFTVWDVGGQEKLR-PLWRHYFNNT 85 (193)
Q Consensus 12 ~~~~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~~--~~~~~i~D~~g~~~~~-~~~~~~~~~~ 85 (193)
....+.+||+++|.+|+|||||+++|.++.+. .+.+|.+.++. .+... ...+.+||+||++++. ..+..+++++
T Consensus 15 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~ 94 (189)
T 1z06_A 15 GSRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNV 94 (189)
T ss_dssp ----CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTC
T ss_pred CCCCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCC
Confidence 34467899999999999999999999988876 35567665543 44444 4789999999999988 7888999999
Q ss_pred CEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH-hHHHhhhCCCcCCCCceEEEEeccccC-
Q 029446 86 DGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP-MEVCEGLGLFDLKNRKWHIQGTCALKG- 163 (193)
Q Consensus 86 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~- 163 (193)
|++++|+|++++.+++.+..|+..+.......+.|+++|+||+|+.+.... .+..+.+. +..+++++++||+++
T Consensus 95 d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~----~~~~~~~~~~Sa~~~~ 170 (189)
T 1z06_A 95 HAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFA----DTHSMPLFETSAKNPN 170 (189)
T ss_dssp CEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHH----HHTTCCEEECCSSSGG
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHH----HHcCCEEEEEeCCcCC
Confidence 999999999999999999999888876544568999999999999754221 12222221 223457999999999
Q ss_pred --CCHHHHHHHHHHHHHh
Q 029446 164 --DGLYEGLDWLASTLKE 179 (193)
Q Consensus 164 --~gi~~~~~~l~~~~~~ 179 (193)
+|++++|++|.+.+.+
T Consensus 171 ~~~~i~~l~~~l~~~i~~ 188 (189)
T 1z06_A 171 DNDHVEAIFMTLAHKLKS 188 (189)
T ss_dssp GGSCHHHHHHHHC-----
T ss_pred cccCHHHHHHHHHHHHhh
Confidence 9999999999887743
No 63
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.97 E-value=2.1e-32 Score=189.15 Aligned_cols=158 Identities=20% Similarity=0.293 Sum_probs=127.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE--EEEEc--CEEEEEEecCCCCCCHHhHHhhhcCCCEEE
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE--KVQYK--NVIFTVWDVGGQEKLRPLWRHYFNNTDGLI 89 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (193)
++.+||+++|++|+|||||++++.++.+. .+.+|.+.++. .+... ...+.+||+||++++...+..+++++|+++
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 82 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV 82 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence 46799999999999999999999998876 45677665543 33333 568999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcCCCCceEEEEeccccCCCHH
Q 029446 90 YVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLY 167 (193)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 167 (193)
+|+|++++.+++.+..|+..+.... .+.|+++|+||+|+.+.. ..++..+.. +..+++++++||+++.|++
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~ 155 (168)
T 1z2a_A 83 LVFSTTDRESFEAISSWREKVVAEV--GDIPTALVQNKIDLLDDSCIKNEEAEGLA-----KRLKLRFYRTSVKEDLNVS 155 (168)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHH--CSCCEEEEEECGGGGGGCSSCHHHHHHHH-----HHHTCEEEECBTTTTBSSH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccCcccccCHHHHHHHH-----HHcCCeEEEEecCCCCCHH
Confidence 9999999999999988888876543 578999999999987632 222222211 2234589999999999999
Q ss_pred HHHHHHHHHHHh
Q 029446 168 EGLDWLASTLKE 179 (193)
Q Consensus 168 ~~~~~l~~~~~~ 179 (193)
+++++|.+.+.+
T Consensus 156 ~l~~~l~~~~~~ 167 (168)
T 1z2a_A 156 EVFKYLAEKHLQ 167 (168)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhh
Confidence 999999998754
No 64
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.97 E-value=4.5e-32 Score=193.02 Aligned_cols=163 Identities=23% Similarity=0.370 Sum_probs=118.2
Q ss_pred hcCCCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE--EEEEc--CEEEEEEecCCCCCCHHhHHhhhcCCC
Q 029446 12 FFGNSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE--KVQYK--NVIFTVWDVGGQEKLRPLWRHYFNNTD 86 (193)
Q Consensus 12 ~~~~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d 86 (193)
....+.+||+++|++|+|||||++++.++.+. .+.+|.+.++. .+... ...+.+||+||++++...+..+++++|
T Consensus 23 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 102 (199)
T 2p5s_A 23 FSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKAD 102 (199)
T ss_dssp -----CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCS
T ss_pred cCcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCC
Confidence 44567899999999999999999999998875 45566665543 34443 478999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC------C-CCHhHHHhhhCCCcCCCCceEEEEec
Q 029446 87 GLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKG------A-MTPMEVCEGLGLFDLKNRKWHIQGTC 159 (193)
Q Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~------~-~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (193)
++++|+|++++.+++.+..|+..+... ...+.|+++|+||+|+.+ . ....+..+.+ ++..+++++++|
T Consensus 103 ~iilv~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~----~~~~~~~~~~~S 177 (199)
T 2p5s_A 103 GVLLLYDVTCEKSFLNIREWVDMIEDA-AHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKL----AMTYGALFCETS 177 (199)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHH-C---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHH----HHHHTCEEEECC
T ss_pred EEEEEEECCChHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcccccccccccccccCHHHHHHH----HHHcCCeEEEee
Confidence 999999999999999998888776543 225789999999999862 1 1111111111 123355899999
Q ss_pred cccCCCHHHHHHHHHHHHHh
Q 029446 160 ALKGDGLYEGLDWLASTLKE 179 (193)
Q Consensus 160 a~~~~gi~~~~~~l~~~~~~ 179 (193)
|++|+|+++++++|.+.+.+
T Consensus 178 A~~g~gv~el~~~l~~~i~~ 197 (199)
T 2p5s_A 178 AKDGSNIVEAVLHLAREVKK 197 (199)
T ss_dssp TTTCTTHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999998854
No 65
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.97 E-value=2.2e-30 Score=184.39 Aligned_cols=160 Identities=24% Similarity=0.337 Sum_probs=128.6
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEEE--EEEcC------------------------------
Q 029446 14 GNSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVEK--VQYKN------------------------------ 60 (193)
Q Consensus 14 ~~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~--~~~~~------------------------------ 60 (193)
.++.++|+++|++|+|||||+++|++..+. .+.+|.+.++.. +...+
T Consensus 4 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (208)
T 3clv_A 4 KKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQH 83 (208)
T ss_dssp CCSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC------------------------------
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccc
Confidence 457899999999999999999999998876 456777755543 33322
Q ss_pred ---------EEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCC
Q 029446 61 ---------VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMK 131 (193)
Q Consensus 61 ---------~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 131 (193)
..+.+||+||++.+...+..+++.+|++++|+|++++.+++.+..|+..+... .+.|+++|+||+|+.
T Consensus 84 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~---~~~piilv~NK~D~~ 160 (208)
T 3clv_A 84 NNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKIS---SNYIIILVANKIDKN 160 (208)
T ss_dssp -CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH---SCCEEEEEEECTTCC
T ss_pred ccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhh---CCCcEEEEEECCCcc
Confidence 88999999999999999999999999999999999999999999888888664 239999999999943
Q ss_pred CC-CCHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHHHHHHHHHhhh
Q 029446 132 GA-MTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEMR 181 (193)
Q Consensus 132 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~ 181 (193)
.. ...++..+.. +..+++++++||+++.|+++++++|.+.+.++.
T Consensus 161 ~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 206 (208)
T 3clv_A 161 KFQVDILEVQKYA-----QDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKNI 206 (208)
T ss_dssp -CCSCHHHHHHHH-----HHTTCEEEEECTTTCTTHHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHH-----HHcCCcEEEEecCCCCCHHHHHHHHHHHHHHhc
Confidence 22 2233333222 224568999999999999999999999887654
No 66
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.97 E-value=1.4e-31 Score=191.39 Aligned_cols=161 Identities=24% Similarity=0.374 Sum_probs=130.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE--EEEEc--CEEEEEEecCCCCCCHHhHHhhhcCCCEEE
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE--KVQYK--NVIFTVWDVGGQEKLRPLWRHYFNNTDGLI 89 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (193)
++.++|+++|++|+|||||+++|.++.+. .+.+|.+.++. .+... .+.+.+||+||++++...+..+++++|+++
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi 85 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGII 85 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEEE
Confidence 46799999999999999999999998876 45577765554 44443 468999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcCCCCceEEEEeccccCCCHH
Q 029446 90 YVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLY 167 (193)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 167 (193)
+|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.. ..++... +. +..+++++++||++|.|++
T Consensus 86 lv~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~-~~----~~~~~~~~~~Sa~~g~gi~ 159 (206)
T 2bcg_Y 86 IVYDVTDQESFNGVKMWLQEIDRYA-TSTVLKLLVGNKCDLKDKRVVEYDVAKE-FA----DANKMPFLETSALDSTNVE 159 (206)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHH-HH----HHTTCCEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHH-HH----HHcCCeEEEEeCCCCCCHH
Confidence 9999999999999999888876542 3579999999999997642 2222221 11 2234579999999999999
Q ss_pred HHHHHHHHHHHhhh
Q 029446 168 EGLDWLASTLKEMR 181 (193)
Q Consensus 168 ~~~~~l~~~~~~~~ 181 (193)
+++++|.+.+.+..
T Consensus 160 ~l~~~l~~~i~~~~ 173 (206)
T 2bcg_Y 160 DAFLTMARQIKESM 173 (206)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999887654
No 67
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.97 E-value=1.3e-31 Score=189.58 Aligned_cols=163 Identities=17% Similarity=0.275 Sum_probs=124.3
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE--EEEEc--CEEEEEEecCCCCCCHHhHHhhhcCCCE
Q 029446 13 FGNSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE--KVQYK--NVIFTVWDVGGQEKLRPLWRHYFNNTDG 87 (193)
Q Consensus 13 ~~~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 87 (193)
.....++|+++|.+|+|||||+++|.++.+. .+.+|.+.+.. .+... .+.+.+||+||++++...+..+++++|+
T Consensus 22 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ 101 (192)
T 2il1_A 22 PADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKG 101 (192)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSE
T ss_pred ccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCE
Confidence 3456799999999999999999999998876 44567765543 34443 4789999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcCCCCceEEEEeccccCCC
Q 029446 88 LIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT--PMEVCEGLGLFDLKNRKWHIQGTCALKGDG 165 (193)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 165 (193)
+++|+|++++.+++.+..|+..+... ...+.|+++|+||+|+.+... .++.. .+.. ...+.+++++||++|+|
T Consensus 102 iilV~D~~~~~s~~~~~~~~~~i~~~-~~~~~piilV~NK~Dl~~~~~v~~~~~~-~~~~---~~~~~~~~~~SA~~g~g 176 (192)
T 2il1_A 102 IILVYDITKKETFDDLPKWMKMIDKY-ASEDAELLLVGNKLDCETDREITRQQGE-KFAQ---QITGMRFCEASAKDNFN 176 (192)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHH-HHHH---TSTTCEEEECBTTTTBS
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccCHHHHH-HHHH---hcCCCeEEEEeCCCCCC
Confidence 99999999999999998887766543 335799999999999875322 22222 2211 11256899999999999
Q ss_pred HHHHHHHHHHHHHhh
Q 029446 166 LYEGLDWLASTLKEM 180 (193)
Q Consensus 166 i~~~~~~l~~~~~~~ 180 (193)
+++++++|.+.+.++
T Consensus 177 i~~l~~~l~~~i~~~ 191 (192)
T 2il1_A 177 VDEIFLKLVDDILKK 191 (192)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999988653
No 68
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.97 E-value=6.5e-32 Score=191.34 Aligned_cols=161 Identities=20% Similarity=0.300 Sum_probs=125.5
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEEE-EEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEEE
Q 029446 14 GNSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVEK-VQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLI 89 (193)
Q Consensus 14 ~~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~-~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (193)
..+.+||+++|.+|+|||||++++.++.+. .+.+|.+..+.. +.. ..+.+.+|||||++++...+..+++++|+++
T Consensus 20 ~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 99 (194)
T 3reg_A 20 GKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVL 99 (194)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred cceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEEE
Confidence 346799999999999999999999998876 456777766553 233 3467899999999999999999999999999
Q ss_pred EEEECCChhhHHHHH-HHHHHHHcCCCCCCCeEEEEEeCCCCCCC----CCHhHHHhhhCCCcCCCCceE-EEEeccccC
Q 029446 90 YVVDSLDRERIGKAK-QEFQAIIKDPFMLNSVILVFANKQDMKGA----MTPMEVCEGLGLFDLKNRKWH-IQGTCALKG 163 (193)
Q Consensus 90 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~ 163 (193)
+|+|++++.+++.+. .|+..+... ..+.|+++|+||+|+.+. ...++..+ + ++..+++ ++++||++|
T Consensus 100 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~Sa~~~ 172 (194)
T 3reg_A 100 LCFAVNNRTSFDNISTKWEPEIKHY--IDTAKTVLVGLKVDLRKDGSDDVTKQEGDD-L----CQKLGCVAYIEASSVAK 172 (194)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHH--CTTSEEEEEEECGGGCCTTTTCCCHHHHHH-H----HHHHTCSCEEECBTTTT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccCCCCcccHHHHHH-H----HHhcCCCEEEEeecCCC
Confidence 999999999999974 455554432 257999999999999753 22222211 1 1122334 999999999
Q ss_pred CCHHHHHHHHHHHHHhhh
Q 029446 164 DGLYEGLDWLASTLKEMR 181 (193)
Q Consensus 164 ~gi~~~~~~l~~~~~~~~ 181 (193)
+|+++++++|.+.+.++.
T Consensus 173 ~gi~~l~~~l~~~i~~~~ 190 (194)
T 3reg_A 173 IGLNEVFEKSVDCIFSNK 190 (194)
T ss_dssp BSHHHHHHHHHHHHHCSC
T ss_pred CCHHHHHHHHHHHHHhcC
Confidence 999999999999987654
No 69
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.97 E-value=5.6e-32 Score=192.73 Aligned_cols=166 Identities=22% Similarity=0.316 Sum_probs=125.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeE--EEEEEcC--EEEEEEecCCCCCCHHhHHhhhcCCCEEE
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNV--EKVQYKN--VIFTVWDVGGQEKLRPLWRHYFNNTDGLI 89 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (193)
++.+||+++|.+|+|||||+++|.++.+. .+.+|.+.++ ..+...+ ..+.+||+||++.+...+..+++++|+++
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 102 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGAL 102 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEE
Confidence 56799999999999999999999988876 4456666444 3444444 78999999999988888899999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcCCCCceEEEEeccccCCCHH
Q 029446 90 YVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLY 167 (193)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 167 (193)
+|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.. ...+..+. ++..++++++|||++|.|++
T Consensus 103 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~-----~~~~~~~~~~~SA~~g~gi~ 176 (200)
T 2o52_A 103 LVYDITSRETYNSLAAWLTDARTLA-SPNIVVILCGNKKDLDPEREVTFLEASRF-----AQENELMFLETSALTGENVE 176 (200)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHT-CTTCEEEEEEECGGGGGGCCSCHHHHHHH-----HHHTTCEEEEECTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCCcccccccCHHHHHHH-----HHHcCCEEEEEeCCCCCCHH
Confidence 9999999999999999888876532 2679999999999987532 22222221 12345689999999999999
Q ss_pred HHHHHHHHHHHhhhccCCC
Q 029446 168 EGLDWLASTLKEMRAAGYS 186 (193)
Q Consensus 168 ~~~~~l~~~~~~~~~~~~~ 186 (193)
+++++|.+.+.++...+..
T Consensus 177 ~l~~~l~~~i~~~~~~~~~ 195 (200)
T 2o52_A 177 EAFLKCARTILNKIDSGEL 195 (200)
T ss_dssp HHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHhcCCC
Confidence 9999999999877765543
No 70
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.97 E-value=2e-30 Score=178.58 Aligned_cols=160 Identities=17% Similarity=0.269 Sum_probs=126.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE-EEEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEE
Q 029446 16 SEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE-KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYV 91 (193)
Q Consensus 16 ~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~-~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 91 (193)
+.++|+++|++|+|||||++++.+..+. .+.+|.+..+. .+.. ....+.+||+||++++...+..+++.+|++++|
T Consensus 2 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (166)
T 2ce2_X 2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 81 (166)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence 3589999999999999999999988776 34556554432 3333 346789999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHH
Q 029446 92 VDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLD 171 (193)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~ 171 (193)
+|++++.+++.+..|+..+.......+.|+++|+||+|+.+.....+..+.+. +..+++++++||+++.|++++++
T Consensus 82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~gi~~l~~ 157 (166)
T 2ce2_X 82 FAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLA----RSYGIPYIETSAKTRQGVEDAFY 157 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHH----HHHTCCEEEECTTTCTTHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHHH----HHcCCeEEEecCCCCCCHHHHHH
Confidence 99999999999988888876644345799999999999876432222222221 12334799999999999999999
Q ss_pred HHHHHHHh
Q 029446 172 WLASTLKE 179 (193)
Q Consensus 172 ~l~~~~~~ 179 (193)
+|.+.+.+
T Consensus 158 ~l~~~~~~ 165 (166)
T 2ce2_X 158 TLVREIRQ 165 (166)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 99998754
No 71
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.97 E-value=1.5e-30 Score=186.63 Aligned_cols=166 Identities=25% Similarity=0.364 Sum_probs=128.3
Q ss_pred hcCCCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeE--EEEEEcC--EEEEEEecCCCCCCHHhHHhhhcCCC
Q 029446 12 FFGNSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNV--EKVQYKN--VIFTVWDVGGQEKLRPLWRHYFNNTD 86 (193)
Q Consensus 12 ~~~~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~d 86 (193)
......++|+++|++|+|||||+++|.+..+. .+.+|.+.++ ..+...+ +.+.+|||||++.+...+..+++++|
T Consensus 15 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 94 (213)
T 3cph_A 15 KSYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAM 94 (213)
T ss_dssp -----CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCS
T ss_pred CCCCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCC
Confidence 34456799999999999999999999988875 4556666554 3455544 78999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCCH
Q 029446 87 GLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGL 166 (193)
Q Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 166 (193)
++++|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.......+..+.+. +..+++++++||+++.|+
T Consensus 95 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~gi 169 (213)
T 3cph_A 95 GIILVYDVTDERTFTNIKQWFKTVNEHA-NDEAQLLLVGNKSDMETRVVTADQGEALA----KELGIPFIESSAKNDDNV 169 (213)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHT-TTCSEEEEEEECTTCSSCCSCHHHHHHHH----HHHTCCEEECBTTTTBSS
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCcccccCHHHHHHHH----HHcCCEEEEEeCCCCCCH
Confidence 9999999999999999988888876542 25789999999999954322222222111 122347999999999999
Q ss_pred HHHHHHHHHHHHhhhc
Q 029446 167 YEGLDWLASTLKEMRA 182 (193)
Q Consensus 167 ~~~~~~l~~~~~~~~~ 182 (193)
++++++|.+.+.++..
T Consensus 170 ~~l~~~l~~~~~~~~~ 185 (213)
T 3cph_A 170 NEIFFTLAKLIQEKID 185 (213)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999887654
No 72
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=1.9e-31 Score=191.22 Aligned_cols=163 Identities=18% Similarity=0.155 Sum_probs=120.8
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCc--cccccccceeE--EEEEEc--CEEEEEEecCCCCC-CHHhHHhhhcCCC
Q 029446 14 GNSEMRVVMLGLDAAGKTTILYKLHIGEV--LSTVPTIGFNV--EKVQYK--NVIFTVWDVGGQEK-LRPLWRHYFNNTD 86 (193)
Q Consensus 14 ~~~~~~v~v~G~~~~GKssli~~l~~~~~--~~~~~t~~~~~--~~~~~~--~~~~~i~D~~g~~~-~~~~~~~~~~~~d 86 (193)
....+||+++|.+|+|||||+++|.+... ....++++.+. ..+..+ .+.+.+|||+|++. ++.....+++.++
T Consensus 34 ~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~ 113 (211)
T 2g3y_A 34 GNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD 113 (211)
T ss_dssp -CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCC
Confidence 34679999999999999999999996443 33334454443 334443 45788999999887 5566777888999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCcCCCCceEEEEeccccCC
Q 029446 87 GLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA--MTPMEVCEGLGLFDLKNRKWHIQGTCALKGD 164 (193)
Q Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (193)
++++|||++++.+|+.+..|+..+.......+.|+|+|+||+|+.+. ...++. +.+ +...++++++|||++|+
T Consensus 114 ~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~-~~~----a~~~~~~~~e~SAk~g~ 188 (211)
T 2g3y_A 114 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEG-RAC----AVVFDCKFIETSAAVQH 188 (211)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHH-HHH----HHHHTCEEEECBTTTTB
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHH-HHH----HHHcCCEEEEEeCCCCC
Confidence 99999999999999999988887765433357999999999999753 222211 111 12234589999999999
Q ss_pred CHHHHHHHHHHHHHhhh
Q 029446 165 GLYEGLDWLASTLKEMR 181 (193)
Q Consensus 165 gi~~~~~~l~~~~~~~~ 181 (193)
||+++|++|.+.+..+.
T Consensus 189 ~v~elf~~l~~~i~~~~ 205 (211)
T 2g3y_A 189 NVKELFEGIVRQVRLRR 205 (211)
T ss_dssp SHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHhc
Confidence 99999999999886544
No 73
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.97 E-value=5.2e-32 Score=190.98 Aligned_cols=162 Identities=17% Similarity=0.178 Sum_probs=121.9
Q ss_pred hcCCCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE-EEEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCE
Q 029446 12 FFGNSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE-KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDG 87 (193)
Q Consensus 12 ~~~~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~-~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 87 (193)
....+.+||+++|.+|+|||||+++|.++.+. .+.+|.+..+. .+.. ..+.+.+|||||+++++.. ..+++++|+
T Consensus 16 ~~~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~ 94 (187)
T 3c5c_A 16 FQGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHA 94 (187)
T ss_dssp ----CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSE
T ss_pred hCCCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCE
Confidence 34567899999999999999999999998876 45677776653 2333 4578999999999988875 568899999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHcCC--CCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCcCCCCceEEEEecc-cc
Q 029446 88 LIYVVDSLDRERIGKAKQEFQAIIKDP--FMLNSVILVFANKQDMKGA--MTPMEVCEGLGLFDLKNRKWHIQGTCA-LK 162 (193)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~p~ivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa-~~ 162 (193)
+++|||++++.+++.+..|+..+.... ...+.|+++|+||+|+.+. ...++..+ + ++..++++++||| ++
T Consensus 95 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~-~----~~~~~~~~~e~Sa~~~ 169 (187)
T 3c5c_A 95 FLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVA-L----AGRFGCLFFEVSACLD 169 (187)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHH-H----HHHHTCEEEECCSSSC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHH-H----HHHcCCcEEEEeecCc
Confidence 999999999999999998888876531 1247899999999999653 22222221 1 1223458999999 89
Q ss_pred CCCHHHHHHHHHHHHHh
Q 029446 163 GDGLYEGLDWLASTLKE 179 (193)
Q Consensus 163 ~~gi~~~~~~l~~~~~~ 179 (193)
++|++++|+.|.+.+.+
T Consensus 170 g~gv~~lf~~l~~~i~~ 186 (187)
T 3c5c_A 170 FEHVQHVFHEAVREARR 186 (187)
T ss_dssp SHHHHHHHHHHHHHHHC
T ss_pred cccHHHHHHHHHHHHhh
Confidence 99999999999998753
No 74
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.97 E-value=7.8e-32 Score=188.13 Aligned_cols=159 Identities=19% Similarity=0.297 Sum_probs=126.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE--EEEEc--CEEEEEEecCCCCCCHHhHHhhhcCCCEEE
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE--KVQYK--NVIFTVWDVGGQEKLRPLWRHYFNNTDGLI 89 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (193)
...++|+++|++|+|||||++++.++.+. .+.++.+.++. .+... ...+.+||+||++++...+..+++++|+++
T Consensus 12 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i 91 (179)
T 2y8e_A 12 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAV 91 (179)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence 46699999999999999999999988776 44577765543 34443 368999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcCCCCceEEEEeccccCCCHH
Q 029446 90 YVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT--PMEVCEGLGLFDLKNRKWHIQGTCALKGDGLY 167 (193)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 167 (193)
+|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+... .++..... +..+++++++||++++|++
T Consensus 92 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~ 165 (179)
T 2y8e_A 92 VVYDITNTNSFHQTSKWIDDVRTER-GSDVIIMLVGNKTDLSDKRQVSTEEGERKA-----KELNVMFIETSAKAGYNVK 165 (179)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHH-TTSSEEEEEEECGGGGGGCCSCHHHHHHHH-----HHHTCEEEEEBTTTTBSHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCcccccCcCCHHHHHHHH-----HHcCCeEEEEeCCCCCCHH
Confidence 9999999999999998888876532 25799999999999875422 22222111 2234589999999999999
Q ss_pred HHHHHHHHHHHh
Q 029446 168 EGLDWLASTLKE 179 (193)
Q Consensus 168 ~~~~~l~~~~~~ 179 (193)
+++++|.+.+.+
T Consensus 166 ~l~~~l~~~~~~ 177 (179)
T 2y8e_A 166 QLFRRVAAALPG 177 (179)
T ss_dssp HHHHHHHHTCC-
T ss_pred HHHHHHHHHHhh
Confidence 999999987644
No 75
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.97 E-value=1.9e-30 Score=183.06 Aligned_cols=166 Identities=19% Similarity=0.278 Sum_probs=118.1
Q ss_pred hcCCCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE-EEEEc--CEEEEEEecCCCCCCHHhHHhhhcCCCE
Q 029446 12 FFGNSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE-KVQYK--NVIFTVWDVGGQEKLRPLWRHYFNNTDG 87 (193)
Q Consensus 12 ~~~~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~-~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 87 (193)
.+....++|+++|.+|+|||||+++|.++.+. .+.+|.+..+. .+... ...+.+||+||++++...+..+++.+|+
T Consensus 16 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 95 (190)
T 3con_A 16 FQGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEG 95 (190)
T ss_dssp ---CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----------CTTCSE
T ss_pred ccccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCE
Confidence 34557799999999999999999999988766 34455554443 33443 4679999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC-CHhHHHhhhCCCcCCCCceEEEEeccccCCCH
Q 029446 88 LIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM-TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGL 166 (193)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 166 (193)
+++|+|++++.+++.+..|+..+.......+.|+++|+||+|+.+.. ..++..+ +. +..+++++++||+++.|+
T Consensus 96 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~-~~----~~~~~~~~~~Sa~~~~gi 170 (190)
T 3con_A 96 FLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHE-LA----KSYGIPFIETSAKTRQGV 170 (190)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHH-HH----HHHTCCEEECCTTTCTTH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHH-HH----HHcCCeEEEEeCCCCCCH
Confidence 99999999999999998888877654333579999999999987632 2222222 11 123347999999999999
Q ss_pred HHHHHHHHHHHHhhhc
Q 029446 167 YEGLDWLASTLKEMRA 182 (193)
Q Consensus 167 ~~~~~~l~~~~~~~~~ 182 (193)
++++++|.+.+.+.+.
T Consensus 171 ~~l~~~l~~~~~~~~~ 186 (190)
T 3con_A 171 EDAFYTLVREIRQYRM 186 (190)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999876553
No 76
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=1e-31 Score=186.28 Aligned_cols=160 Identities=18% Similarity=0.229 Sum_probs=124.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEEE-EEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEE
Q 029446 16 SEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVEK-VQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYV 91 (193)
Q Consensus 16 ~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~-~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 91 (193)
..++|+++|++|+|||||++++.++.+. .+.+|.+..+.. +.. ....+.+||+||++++...+..+++++|++++|
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v 81 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV 81 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEE
Confidence 4689999999999999999999998776 455666655543 222 346899999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHcCC-CCCCCeEEEEEeCCCCCCCCCH-hHHHhhhCCCcCCCCceEEEEeccccCCCHHHH
Q 029446 92 VDSLDRERIGKAKQEFQAIIKDP-FMLNSVILVFANKQDMKGAMTP-MEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEG 169 (193)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~ 169 (193)
+|++++.+++.+..|+..+.... ...+.|+++|+||+|+.+.... .+....+ .+..+++++++||++|.|++++
T Consensus 82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~----~~~~~~~~~~~Sa~~~~gi~~l 157 (172)
T 2erx_A 82 YSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEAL----ARTWKCAFMETSAKLNHNVKEL 157 (172)
T ss_dssp EETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHH----HHHHTCEEEECBTTTTBSHHHH
T ss_pred EECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHH----HHHhCCeEEEecCCCCcCHHHH
Confidence 99999999998888887765421 2257899999999998754222 1111111 1223458999999999999999
Q ss_pred HHHHHHHHHh
Q 029446 170 LDWLASTLKE 179 (193)
Q Consensus 170 ~~~l~~~~~~ 179 (193)
+++|.+.+.+
T Consensus 158 ~~~l~~~~~~ 167 (172)
T 2erx_A 158 FQELLNLEKR 167 (172)
T ss_dssp HHHHHHTCCS
T ss_pred HHHHHHHHhh
Confidence 9999987644
No 77
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.97 E-value=5.5e-31 Score=184.26 Aligned_cols=164 Identities=18% Similarity=0.222 Sum_probs=116.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE--EEEEc---CEEEEEEecCCCCCCHHhHHhhhcCCCE
Q 029446 14 GNSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE--KVQYK---NVIFTVWDVGGQEKLRPLWRHYFNNTDG 87 (193)
Q Consensus 14 ~~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~~---~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 87 (193)
....++|+++|++|+|||||++++.+..+. .+.+|.+.+.. .+... ...+.+||+||++.+...+..+++++|+
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 84 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADC 84 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCE
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCE
Confidence 457899999999999999999999998876 44566654443 34333 5789999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHcCC---CCCCCeEEEEEeCCCCCCCC---CHhHHHhhhCCCcCCCCceEEEEeccc
Q 029446 88 LIYVVDSLDRERIGKAKQEFQAIIKDP---FMLNSVILVFANKQDMKGAM---TPMEVCEGLGLFDLKNRKWHIQGTCAL 161 (193)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~p~ivv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (193)
+++|+|++++.+++.+..|+..+.... ...+.|+++|+||+|+.+.. ..++..+ +.. ...+.+++++||+
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~-~~~---~~~~~~~~~~Sa~ 160 (182)
T 1ky3_A 85 CVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQE-LAK---SLGDIPLFLTSAK 160 (182)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHH-HHH---HTTSCCEEEEBTT
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHH-HHH---hcCCCeEEEEecC
Confidence 999999999999999988888776532 23678999999999985431 2222222 110 1234579999999
Q ss_pred cCCCHHHHHHHHHHHHHhhh
Q 029446 162 KGDGLYEGLDWLASTLKEMR 181 (193)
Q Consensus 162 ~~~gi~~~~~~l~~~~~~~~ 181 (193)
+|+|+++++++|.+.+.+++
T Consensus 161 ~~~gi~~l~~~l~~~~~~~~ 180 (182)
T 1ky3_A 161 NAINVDTAFEEIARSALQQN 180 (182)
T ss_dssp TTBSHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhh
Confidence 99999999999999987665
No 78
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2e-31 Score=192.93 Aligned_cols=163 Identities=18% Similarity=0.313 Sum_probs=123.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE--EEEEcC--EEEEEEecCCCCCCHHhHHhhhcCCCEEE
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE--KVQYKN--VIFTVWDVGGQEKLRPLWRHYFNNTDGLI 89 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (193)
...++|+|+|++|+|||||+++|.+..+. .+.+|.+.++. .+...+ +.+.+|||||++++...+..+++++|+++
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi 90 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEE
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEE
Confidence 56799999999999999999999998876 44566665543 444544 78999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcCCCCceEEEEeccccCCCHH
Q 029446 90 YVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLY 167 (193)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 167 (193)
+|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.. ..++... + ++..+++++++||++++|++
T Consensus 91 lV~D~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~-~----~~~~~~~~~~~Sa~~~~gi~ 164 (223)
T 3cpj_B 91 IVYDISKSSSYENCNHWLSELRENA-DDNVAVGLIGNKSDLAHLRAVPTEESKT-F----AQENQLLFTETSALNSENVD 164 (223)
T ss_dssp EEEC-CCHHHHHHHHHHHHHHHHHC-C--CEEEEEECCGGGGGGCCSCHHHHHH-H----HHHTTCEEEECCCC-CCCHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccccccccCHHHHHH-H----HHHcCCEEEEEeCCCCCCHH
Confidence 9999999999999998888876542 3578999999999997532 2222222 1 12344689999999999999
Q ss_pred HHHHHHHHHHHhhhcc
Q 029446 168 EGLDWLASTLKEMRAA 183 (193)
Q Consensus 168 ~~~~~l~~~~~~~~~~ 183 (193)
+++++|.+.+.++...
T Consensus 165 ~l~~~l~~~i~~~~~~ 180 (223)
T 3cpj_B 165 KAFEELINTIYQKVSK 180 (223)
T ss_dssp HHHHHHHHHHTTCC--
T ss_pred HHHHHHHHHHHHHhhh
Confidence 9999999998866543
No 79
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.97 E-value=3.8e-30 Score=184.92 Aligned_cols=163 Identities=23% Similarity=0.295 Sum_probs=121.5
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEEEEEc---CEEEEEEecCCCCCCHH-hHHhhhcCCCEEE
Q 029446 14 GNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYK---NVIFTVWDVGGQEKLRP-LWRHYFNNTDGLI 89 (193)
Q Consensus 14 ~~~~~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~---~~~~~i~D~~g~~~~~~-~~~~~~~~~d~~i 89 (193)
..+.+||+++|++|+|||||+++|+++.+....+++......+... ...+.+|||||++++.. .+..+++++|+++
T Consensus 4 ~~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i 83 (214)
T 2fh5_B 4 KSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVV 83 (214)
T ss_dssp ----CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcceeeEEEEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEEE
Confidence 3567999999999999999999999988876556666666666665 68999999999999988 7888899999999
Q ss_pred EEEECCChh-hHHHHHHHHHHHHcC--CCCCCCeEEEEEeCCCCCCCCCHhHHHhhhC----------------------
Q 029446 90 YVVDSLDRE-RIGKAKQEFQAIIKD--PFMLNSVILVFANKQDMKGAMTPMEVCEGLG---------------------- 144 (193)
Q Consensus 90 ~v~d~~~~~-s~~~~~~~~~~~~~~--~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~---------------------- 144 (193)
+|+|+++.. ++.....++..++.. ....+.|+++|+||+|+.+....++..+.+.
T Consensus 84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~~~ 163 (214)
T 2fh5_B 84 FVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSST 163 (214)
T ss_dssp EEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC-----------
T ss_pred EEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCCcc
Confidence 999999854 466666666665432 1235789999999999987654433322111
Q ss_pred -CCcCC---------C--CceEEEEeccccC------CCHHHHHHHHHHH
Q 029446 145 -LFDLK---------N--RKWHIQGTCALKG------DGLYEGLDWLAST 176 (193)
Q Consensus 145 -~~~~~---------~--~~~~~~~~Sa~~~------~gi~~~~~~l~~~ 176 (193)
..... . ..++|++|||++| +||+++|++|.+.
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 164 APAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp -CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred ccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence 00111 1 1788999999999 9999999999875
No 80
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.97 E-value=2.8e-31 Score=191.36 Aligned_cols=164 Identities=21% Similarity=0.249 Sum_probs=129.8
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEEEEEEc-----CEEEEEEecCCCCCCHHhHHhhhcCCCE
Q 029446 14 GNSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVEKVQYK-----NVIFTVWDVGGQEKLRPLWRHYFNNTDG 87 (193)
Q Consensus 14 ~~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~~~~~-----~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 87 (193)
....+||+++|.+|+|||||+|+|+++.+. .+.+|.+......... .+.+.+|||||++.+...+..++.++|+
T Consensus 8 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 87 (218)
T 4djt_A 8 RELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASG 87 (218)
T ss_dssp --CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSE
T ss_pred ccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCE
Confidence 356799999999999999999999988776 3467777766554431 2789999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCcCCCCceEEEEeccccCCCH
Q 029446 88 LIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT-PMEVCEGLGLFDLKNRKWHIQGTCALKGDGL 166 (193)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 166 (193)
+++|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+... ..+....+ ++..+++++++||++|.|+
T Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~----~~~~~~~~~~~Sa~~g~gv 162 (218)
T 4djt_A 88 AILFFDVTSRITCQNLARWVKEFQAVV-GNEAPIVVCANKIDIKNRQKISKKLVMEV----LKGKNYEYFEISAKTAHNF 162 (218)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHH-CSSSCEEEEEECTTCC----CCHHHHHHH----TTTCCCEEEEEBTTTTBTT
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHH----HHHcCCcEEEEecCCCCCH
Confidence 999999999999999988888776532 24689999999999976422 22222222 2345678999999999999
Q ss_pred HHHHHHHHHHHHhhhc
Q 029446 167 YEGLDWLASTLKEMRA 182 (193)
Q Consensus 167 ~~~~~~l~~~~~~~~~ 182 (193)
++++++|.+.+.+...
T Consensus 163 ~~l~~~l~~~~~~~~~ 178 (218)
T 4djt_A 163 GLPFLHLARIFTGRPD 178 (218)
T ss_dssp THHHHHHHHHHHCCTT
T ss_pred HHHHHHHHHHHhcccc
Confidence 9999999999976554
No 81
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=1.1e-30 Score=185.48 Aligned_cols=165 Identities=15% Similarity=0.210 Sum_probs=128.6
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEEE-EEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEEE
Q 029446 14 GNSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVEK-VQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLI 89 (193)
Q Consensus 14 ~~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~-~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (193)
....++|+++|.+|+|||||+++|.++.+. .+.+|.+..+.. +.. ....+.+|||||++++...+..+++++|+++
T Consensus 5 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 84 (199)
T 2gf0_A 5 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFI 84 (199)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEE
T ss_pred CCCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccceeEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEE
Confidence 356799999999999999999999998776 345676655543 222 3568999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHcCC-CCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCCHHH
Q 029446 90 YVVDSLDRERIGKAKQEFQAIIKDP-FMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYE 168 (193)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 168 (193)
+|+|++++.+++.+..|+..+.... ...+.|+++|+||+|+.+.....+....+ .+..+++++++||++|.|+++
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~----~~~~~~~~~~~Sa~~~~gi~~ 160 (199)
T 2gf0_A 85 LVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAV----AQEWKCAFMETSAKMNYNVKE 160 (199)
T ss_dssp EEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHHH----HHHHTCEEEECBTTTTBSHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHHH----HHHhCCeEEEEecCCCCCHHH
Confidence 9999999999999888776655421 12478999999999997643222222211 122345899999999999999
Q ss_pred HHHHHHHHHHhhhc
Q 029446 169 GLDWLASTLKEMRA 182 (193)
Q Consensus 169 ~~~~l~~~~~~~~~ 182 (193)
++++|.+.+.++..
T Consensus 161 l~~~l~~~~~~~~~ 174 (199)
T 2gf0_A 161 LFQELLTLETRRNM 174 (199)
T ss_dssp HHHHHHHHCSSSCE
T ss_pred HHHHHHHHHhhhhc
Confidence 99999998876543
No 82
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.97 E-value=1.6e-30 Score=185.75 Aligned_cols=165 Identities=16% Similarity=0.208 Sum_probs=129.0
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEEEE--EEc--CEEEEEEecCCCCCCHHhHHhhhcCCCEE
Q 029446 14 GNSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVEKV--QYK--NVIFTVWDVGGQEKLRPLWRHYFNNTDGL 88 (193)
Q Consensus 14 ~~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~~--~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 88 (193)
....++|+++|++|+|||||+++|.+..+. .+.+|.+.+.... ... .+.+.+||+||++.+...+..+++++|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 84 (207)
T 1vg8_A 5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCC 84 (207)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEE
Confidence 457899999999999999999999998876 4567777665443 333 47899999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHcCC---CCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCC
Q 029446 89 IYVVDSLDRERIGKAKQEFQAIIKDP---FMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDG 165 (193)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 165 (193)
++|+|++++.+++.+..|+..+.... ...+.|+++|+||+|+.+.....+....+.. ...+++++++||++|.|
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~---~~~~~~~~~~Sa~~g~g 161 (207)
T 1vg8_A 85 VLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCY---SKNNIPYFETSAKEAIN 161 (207)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHH---HTTSCCEEECBTTTTBS
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHH---hcCCceEEEEeCCCCCC
Confidence 99999999999999988888776532 1247899999999999854322222222211 13445799999999999
Q ss_pred HHHHHHHHHHHHHhhh
Q 029446 166 LYEGLDWLASTLKEMR 181 (193)
Q Consensus 166 i~~~~~~l~~~~~~~~ 181 (193)
+++++++|.+.+.+..
T Consensus 162 i~~l~~~l~~~~~~~~ 177 (207)
T 1vg8_A 162 VEQAFQTIARNALKQE 177 (207)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999887654
No 83
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=2.7e-30 Score=182.96 Aligned_cols=159 Identities=19% Similarity=0.184 Sum_probs=124.5
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE-EEEEc--CEEEEEEecCCCCCCHHhHHhhhcCCCEE
Q 029446 13 FGNSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE-KVQYK--NVIFTVWDVGGQEKLRPLWRHYFNNTDGL 88 (193)
Q Consensus 13 ~~~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~-~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 88 (193)
...+.++|+++|++|+|||||++++.++.+. .+.+|.+..+. .+... .+.+.+||+||++++...+..+++++|++
T Consensus 14 ~~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 93 (194)
T 2atx_A 14 PGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVF 93 (194)
T ss_dssp CEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEE
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEE
Confidence 3346799999999999999999999998876 45667665553 34443 37899999999999999999999999999
Q ss_pred EEEEECCChhhHHHHH-HHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--------------CHhHHHhhhCCCcCCCCce
Q 029446 89 IYVVDSLDRERIGKAK-QEFQAIIKDPFMLNSVILVFANKQDMKGAM--------------TPMEVCEGLGLFDLKNRKW 153 (193)
Q Consensus 89 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--------------~~~~~~~~~~~~~~~~~~~ 153 (193)
++|+|++++.+++.+. .|+..+.... .+.|+++|+||+|+.+.. ..++..+ + ++..+.
T Consensus 94 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~-~----~~~~~~ 166 (194)
T 2atx_A 94 LICFSVVNPASFQNVKEEWVPELKEYA--PNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQK-L----AKEIGA 166 (194)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHS--TTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHH-H----HHHHTC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHH-H----HHHcCC
Confidence 9999999999999987 5666665432 479999999999997642 1111111 1 111233
Q ss_pred -EEEEeccccCCCHHHHHHHHHHHHH
Q 029446 154 -HIQGTCALKGDGLYEGLDWLASTLK 178 (193)
Q Consensus 154 -~~~~~Sa~~~~gi~~~~~~l~~~~~ 178 (193)
++++|||++|+|+++++++|.+.+.
T Consensus 167 ~~~~~~Sa~~g~gi~~l~~~l~~~i~ 192 (194)
T 2atx_A 167 CCYVECSALTQKGLKTVFDEAIIAIL 192 (194)
T ss_dssp SCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cEEEEeeCCCCCCHHHHHHHHHHHHh
Confidence 7999999999999999999998875
No 84
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.97 E-value=3.2e-30 Score=183.52 Aligned_cols=163 Identities=17% Similarity=0.166 Sum_probs=120.8
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE-EEEEcC--EEEEEEecCCCCCCHHhHHhhhcCCCEE
Q 029446 13 FGNSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE-KVQYKN--VIFTVWDVGGQEKLRPLWRHYFNNTDGL 88 (193)
Q Consensus 13 ~~~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~-~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 88 (193)
.....++|+++|++|+|||||++++.++.+. .+.+|.+..+. .+..++ +.+.+||+||++++...+..+++++|++
T Consensus 16 ~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 95 (201)
T 2q3h_A 16 AEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIF 95 (201)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEE
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEE
Confidence 4467899999999999999999999988866 45677765553 344443 6788999999999999999999999999
Q ss_pred EEEEECCChhhHHHHH-HHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--------------CHhHHHhhhCCCcCCCCce
Q 029446 89 IYVVDSLDRERIGKAK-QEFQAIIKDPFMLNSVILVFANKQDMKGAM--------------TPMEVCEGLGLFDLKNRKW 153 (193)
Q Consensus 89 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--------------~~~~~~~~~~~~~~~~~~~ 153 (193)
++|+|++++.+++.+. .|+..+.... .+.|+++|+||+|+.+.. ..++.. .+ .+..+.
T Consensus 96 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~-~~----~~~~~~ 168 (201)
T 2q3h_A 96 LLCFSVVSPSSFQNVSEKWVPEIRCHC--PKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAK-LL----AEEIKA 168 (201)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC--SSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHH-HH----HHHHTC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHH-HH----HHhcCC
Confidence 9999999999999987 5766665432 479999999999987531 111111 11 112233
Q ss_pred -EEEEeccccCCCHHHHHHHHHHHHHhhhc
Q 029446 154 -HIQGTCALKGDGLYEGLDWLASTLKEMRA 182 (193)
Q Consensus 154 -~~~~~Sa~~~~gi~~~~~~l~~~~~~~~~ 182 (193)
++++|||++|+|+++++++|.+.+.+...
T Consensus 169 ~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~ 198 (201)
T 2q3h_A 169 ASYIECSALTQKNLKEVFDAAIVAGIQYSD 198 (201)
T ss_dssp SEEEECCTTTCTTHHHHHHHHHHHHHHHHC
T ss_pred cEEEEEecCCCCCHHHHHHHHHHHHhcccc
Confidence 79999999999999999999999876654
No 85
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.97 E-value=2.6e-31 Score=190.70 Aligned_cols=162 Identities=17% Similarity=0.173 Sum_probs=124.6
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE-EEEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEEE
Q 029446 14 GNSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE-KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLI 89 (193)
Q Consensus 14 ~~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~-~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (193)
....+||+++|++|+|||||++++.++.+. .+.+|.+..+. .+.. ..+.+.+||+||++++...+..+++++|+++
T Consensus 6 ~~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 85 (212)
T 2j0v_A 6 VSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFV 85 (212)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEE
T ss_pred cCceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEE
Confidence 357799999999999999999999988876 45677765553 2333 3479999999999999999999999999999
Q ss_pred EEEECCChhhHHHHH-HHHHHHHcCCCCCCCeEEEEEeCCCCCCCC----------CHhHHHhhhCCCcCCCCc-eEEEE
Q 029446 90 YVVDSLDRERIGKAK-QEFQAIIKDPFMLNSVILVFANKQDMKGAM----------TPMEVCEGLGLFDLKNRK-WHIQG 157 (193)
Q Consensus 90 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~----------~~~~~~~~~~~~~~~~~~-~~~~~ 157 (193)
+|+|++++.+++.+. .|+..+.... .+.|+++|+||+|+.+.. ..++..+ + ++..+ .++++
T Consensus 86 lv~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~-~----~~~~~~~~~~~ 158 (212)
T 2j0v_A 86 LAFSLISKASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEE-L----RKQIGAAAYIE 158 (212)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC--TTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHH-H----HHHHTCSEEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEeCHHhhhCccccccccCCCCHHHHHH-H----HHHcCCceEEE
Confidence 999999999999987 5666665432 479999999999987642 1111111 1 11223 37999
Q ss_pred eccccCCCHHHHHHHHHHHHHhhhc
Q 029446 158 TCALKGDGLYEGLDWLASTLKEMRA 182 (193)
Q Consensus 158 ~Sa~~~~gi~~~~~~l~~~~~~~~~ 182 (193)
+||++|+|++++|++|.+.+.+...
T Consensus 159 ~Sa~~g~gi~~l~~~l~~~~~~~~~ 183 (212)
T 2j0v_A 159 CSSKTQQNVKAVFDTAIKVVLQPPR 183 (212)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHCC--
T ss_pred ccCCCCCCHHHHHHHHHHHHhhhhh
Confidence 9999999999999999999876553
No 86
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.97 E-value=8e-31 Score=183.62 Aligned_cols=159 Identities=18% Similarity=0.178 Sum_probs=112.4
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE---EEEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEE
Q 029446 13 FGNSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE---KVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGL 88 (193)
Q Consensus 13 ~~~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~---~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 88 (193)
...+.+||+++|++|+|||||++++.++.+. .+.+|.+..+. .+....+.+.+||+||++++...+..+++++|++
T Consensus 4 ~~~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 83 (182)
T 3bwd_D 4 SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVF 83 (182)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CBCCCC-------CEEECCCC-CTTTTTGGGGGTTCSEE
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEE
Confidence 3457899999999999999999999988866 34566654432 1233457788999999999999999999999999
Q ss_pred EEEEECCChhhHHHHH-HHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC------------HhHHHhhhCCCcCCCCce-E
Q 029446 89 IYVVDSLDRERIGKAK-QEFQAIIKDPFMLNSVILVFANKQDMKGAMT------------PMEVCEGLGLFDLKNRKW-H 154 (193)
Q Consensus 89 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~------------~~~~~~~~~~~~~~~~~~-~ 154 (193)
++|+|++++.+++.+. .|+..+.... .+.|+++|+||+|+.+... .++. ..+ .+..+. +
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~-~~~----~~~~~~~~ 156 (182)
T 3bwd_D 84 ILAFSLISKASYENVSKKWIPELKHYA--PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQG-EEL----KKLIGAPA 156 (182)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC--TTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHH-HHH----HHHHTCSE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEechhhhcCcccccccccCCCCCHHHH-HHH----HHHcCCCE
Confidence 9999999999999987 4666654432 4799999999999876421 1111 111 112233 8
Q ss_pred EEEeccccCCCHHHHHHHHHHHHH
Q 029446 155 IQGTCALKGDGLYEGLDWLASTLK 178 (193)
Q Consensus 155 ~~~~Sa~~~~gi~~~~~~l~~~~~ 178 (193)
+++|||++|+|+++++++|.+.+.
T Consensus 157 ~~~~Sa~~~~gi~~l~~~l~~~i~ 180 (182)
T 3bwd_D 157 YIECSSKSQENVKGVFDAAIRVVL 180 (182)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 999999999999999999998774
No 87
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.97 E-value=7.1e-31 Score=189.68 Aligned_cols=164 Identities=22% Similarity=0.303 Sum_probs=133.0
Q ss_pred hcCCCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEEEEEE----cCEEEEEEecCCCCCCHHhHHhhhcCCC
Q 029446 12 FFGNSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVEKVQY----KNVIFTVWDVGGQEKLRPLWRHYFNNTD 86 (193)
Q Consensus 12 ~~~~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~~~~----~~~~~~i~D~~g~~~~~~~~~~~~~~~d 86 (193)
......+||+++|.+|+|||||++++..+.+. .+.+|.+.+...... ..+.+.+|||||++.+...+..+++++|
T Consensus 10 ~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 89 (221)
T 3gj0_A 10 GEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQ 89 (221)
T ss_dssp TCCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCC
T ss_pred CCcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCC
Confidence 34567899999999999999999997766655 456777777655433 4678999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCCH
Q 029446 87 GLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGL 166 (193)
Q Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 166 (193)
++++|+|++++.+++.+..|+..+.... .+.|+++|+||+|+.+.....+. ....+..++++++|||++|.|+
T Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~-----~~~~~~~~~~~~~~Sa~~~~gi 162 (221)
T 3gj0_A 90 CAIIMFDVTSRVTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKDRKVKAKS-----IVFHRKKNLQYYDISAKSNYNF 162 (221)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHS--TTCCEEEEEECTTSSSCSSCGGG-----CCHHHHHTCEEEECBGGGTBTT
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECCccccccccHHH-----HHHHHHcCCEEEEEeCCCCCCH
Confidence 9999999999999999999888887643 47899999999999765322211 1112334568999999999999
Q ss_pred HHHHHHHHHHHHhhhc
Q 029446 167 YEGLDWLASTLKEMRA 182 (193)
Q Consensus 167 ~~~~~~l~~~~~~~~~ 182 (193)
++++++|.+.+.....
T Consensus 163 ~~l~~~l~~~l~~~~~ 178 (221)
T 3gj0_A 163 EKPFLWLARKLIGDPN 178 (221)
T ss_dssp THHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHHHHhCcc
Confidence 9999999999876553
No 88
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.97 E-value=2e-30 Score=182.31 Aligned_cols=159 Identities=16% Similarity=0.195 Sum_probs=122.5
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE-EEEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEEE
Q 029446 14 GNSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE-KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLI 89 (193)
Q Consensus 14 ~~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~-~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (193)
....+||+++|++|+|||||+++|.++.+. .+.+|.+..+. .+.. ..+.+.+||+||++.+...+..+++++|+++
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 83 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 83 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEE
Confidence 357899999999999999999999998876 35677765553 2333 3578999999999999999999999999999
Q ss_pred EEEECCChhhHHHH-HHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--------------CCHhHHHhhhCCCcCCCCc-e
Q 029446 90 YVVDSLDRERIGKA-KQEFQAIIKDPFMLNSVILVFANKQDMKGA--------------MTPMEVCEGLGLFDLKNRK-W 153 (193)
Q Consensus 90 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~--------------~~~~~~~~~~~~~~~~~~~-~ 153 (193)
+|+|++++.+++.+ ..|+..+.... ++.|+++|+||+|+.+. ...++..+ + ++..+ .
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~-~----~~~~~~~ 156 (184)
T 1m7b_A 84 ICFDISRPETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGAN-M----AKQIGAA 156 (184)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC--TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHH-H----HHHHTCS
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHC--CCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHH-H----HHHcCCc
Confidence 99999999999998 56666654432 57999999999999742 11121111 1 11122 4
Q ss_pred EEEEeccc-cCCCHHHHHHHHHHHHHh
Q 029446 154 HIQGTCAL-KGDGLYEGLDWLASTLKE 179 (193)
Q Consensus 154 ~~~~~Sa~-~~~gi~~~~~~l~~~~~~ 179 (193)
++++|||+ +++|++++|+.+.+.+.+
T Consensus 157 ~~~e~Sa~~~~~gi~~l~~~i~~~~l~ 183 (184)
T 1m7b_A 157 TYIECSALQSENSVRDIFHVATLACVN 183 (184)
T ss_dssp EEEECBTTTBHHHHHHHHHHHHHHHHT
T ss_pred EEEEeeecCCCcCHHHHHHHHHHHHhc
Confidence 89999999 689999999999998754
No 89
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=1.2e-29 Score=181.56 Aligned_cols=165 Identities=19% Similarity=0.197 Sum_probs=121.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccceeEE-EEEEc--CEEEEEEecCCCCCCHHhHHhhhcCCCEEEE
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHIGEVLS-TVPTIGFNVE-KVQYK--NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIY 90 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~-~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 90 (193)
...+||+++|.+|+|||||+++|.++.+.. +.+|.+..+. .+... .+.+.+|||||++++...+..+++++|++++
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 102 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 102 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEEE
T ss_pred ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEEE
Confidence 467899999999999999999999988763 4566665543 33443 4789999999999999999999999999999
Q ss_pred EEECCChhhHHHHH-HHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCC---------cCCCCce-EEEEec
Q 029446 91 VVDSLDRERIGKAK-QEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLF---------DLKNRKW-HIQGTC 159 (193)
Q Consensus 91 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~---------~~~~~~~-~~~~~S 159 (193)
|+|++++.+++.+. .|+..+... ..+.|+++|+||+|+.+.....+....+... .++..+. +++++|
T Consensus 103 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 180 (207)
T 2fv8_A 103 CFSVDSPDSLENIPEKWVPEVKHF--CPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECS 180 (207)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHH--STTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEee
Confidence 99999999999984 555555432 2579999999999997652221111111100 0112233 799999
Q ss_pred cccCCCHHHHHHHHHHHHHhhh
Q 029446 160 ALKGDGLYEGLDWLASTLKEMR 181 (193)
Q Consensus 160 a~~~~gi~~~~~~l~~~~~~~~ 181 (193)
|++|+|+++++++|.+.+.+..
T Consensus 181 A~~g~gi~el~~~l~~~i~~~~ 202 (207)
T 2fv8_A 181 AKTKEGVREVFETATRAALQKR 202 (207)
T ss_dssp TTTCTTHHHHHHHHHHHHHSCC
T ss_pred CCCCCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999886543
No 90
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.97 E-value=1e-30 Score=185.62 Aligned_cols=163 Identities=20% Similarity=0.270 Sum_probs=117.8
Q ss_pred hcCCCccEEEEEcCCCCCHHHHHHHHhcCCccccccccceeEE----EEE-EcCEEEEEEecCCCCCCHHhH---Hhhhc
Q 029446 12 FFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVE----KVQ-YKNVIFTVWDVGGQEKLRPLW---RHYFN 83 (193)
Q Consensus 12 ~~~~~~~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~----~~~-~~~~~~~i~D~~g~~~~~~~~---~~~~~ 83 (193)
....+.+||+++|.+|||||||++++.+........+.+.... .+. ...+.+.+||+||+++|.... ..+++
T Consensus 15 ~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~ 94 (196)
T 3llu_A 15 YFQGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFR 94 (196)
T ss_dssp -----CCEEEEEESTTSSHHHHHHHHHSCCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHHH
T ss_pred cccCcceEEEEECCCCCCHHHHHHHHHhcCCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccccc
Confidence 4556889999999999999999998887544432222222222 222 356899999999999988776 88999
Q ss_pred CCCEEEEEEECCCh--hhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC----HhHH----HhhhCCCcCCCCce
Q 029446 84 NTDGLIYVVDSLDR--ERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT----PMEV----CEGLGLFDLKNRKW 153 (193)
Q Consensus 84 ~~d~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~----~~~~----~~~~~~~~~~~~~~ 153 (193)
++|++++|||++++ +++..+..|+...... ..+.|+++|+||+|+.+... .+++ .+.+.....+..++
T Consensus 95 ~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 172 (196)
T 3llu_A 95 GTGALIYVIDAQDDYMEALTRLHITVSKAYKV--NPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHL 172 (196)
T ss_dssp TCSEEEEEEETTSCCHHHHHHHHHHHHHHHHH--CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSCE
T ss_pred cCCEEEEEEECCCchHHHHHHHHHHHHHHHhc--CCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCCc
Confidence 99999999999987 6777777777776432 25899999999999876321 1222 22222222236678
Q ss_pred EEEEeccccCCCHHHHHHHHHHHH
Q 029446 154 HIQGTCALKGDGLYEGLDWLASTL 177 (193)
Q Consensus 154 ~~~~~Sa~~~~gi~~~~~~l~~~~ 177 (193)
++++|||++ +|++++|+.+.+.+
T Consensus 173 ~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 173 SFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp EEEEECTTS-THHHHHHHHHHHHT
T ss_pred ceEEEEech-hhHHHHHHHHHHHh
Confidence 999999999 99999999998865
No 91
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.97 E-value=7.8e-30 Score=183.44 Aligned_cols=165 Identities=18% Similarity=0.189 Sum_probs=107.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE-EEEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEE
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE-KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIY 90 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~-~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 90 (193)
.+.+||+++|.+|+|||||+++|.++.+. .+.+|.+..+. .+.. ..+.+.+|||||++++...+..+++++|++++
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 111 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLL 111 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEEEEEEEETTEEEEEEEEEC---------------CEEEEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEEE
Confidence 46799999999999999999999998876 34566655543 2333 34689999999999999999999999999999
Q ss_pred EEECCChhhHHHHH-HHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhC---------CCcCCCCce-EEEEec
Q 029446 91 VVDSLDRERIGKAK-QEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLG---------LFDLKNRKW-HIQGTC 159 (193)
Q Consensus 91 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~---------~~~~~~~~~-~~~~~S 159 (193)
|+|++++.+++.+. .|+..+.... .+.|+++|+||+|+.+.....+..+... ...++..+. ++++||
T Consensus 112 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 189 (214)
T 2j1l_A 112 CFDVTSPNSFDNIFNRWYPEVNHFC--KKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECS 189 (214)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHC--SSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECB
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEec
Confidence 99999999999987 5666654432 5789999999999986522111110000 001122344 899999
Q ss_pred cccCCCHHHHHHHHHHHHHhhh
Q 029446 160 ALKGDGLYEGLDWLASTLKEMR 181 (193)
Q Consensus 160 a~~~~gi~~~~~~l~~~~~~~~ 181 (193)
|++|.|+++++++|.+.+.+..
T Consensus 190 A~~g~gi~el~~~l~~~~~~~~ 211 (214)
T 2j1l_A 190 ARLHDNVHAVFQEAAEVALSSR 211 (214)
T ss_dssp TTTTBSHHHHHHHHHHHHHHC-
T ss_pred CCCCCCHHHHHHHHHHHHHHhh
Confidence 9999999999999999987654
No 92
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.97 E-value=2.1e-31 Score=190.36 Aligned_cols=162 Identities=17% Similarity=0.152 Sum_probs=96.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcC--Ccc-ccccccceeE--EEEEEc----CEEEEEEecCCCCCCHHhHHhhhcCC
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHIG--EVL-STVPTIGFNV--EKVQYK----NVIFTVWDVGGQEKLRPLWRHYFNNT 85 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~~--~~~-~~~~t~~~~~--~~~~~~----~~~~~i~D~~g~~~~~~~~~~~~~~~ 85 (193)
...++|+++|++|+|||||+++|.+. .+. .+.+|.+.++ ..+... ...+.+||+||++.+...+..+++++
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 97 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV 97 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence 45689999999999999999999988 655 4567776443 345554 57899999999999999999999999
Q ss_pred CEEEEEEECCChhhHHHHHHHHHHHHcCCC--CCCCeEEEEEeCCCCCC-C--CCHhHHHhhhCCCcCCCCceEEEEecc
Q 029446 86 DGLIYVVDSLDRERIGKAKQEFQAIIKDPF--MLNSVILVFANKQDMKG-A--MTPMEVCEGLGLFDLKNRKWHIQGTCA 160 (193)
Q Consensus 86 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (193)
|++++|+|++++.+++.+..|+..+..... ..+.|+++|+||+|+.+ . ...++..+.. +..+++++++||
T Consensus 98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa 172 (208)
T 2yc2_C 98 YYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWA-----TTNTLDFFDVSA 172 (208)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHH-----HHTTCEEEECCC
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHH-----HHcCCEEEEecc
Confidence 999999999999999999999888876432 25799999999999976 2 2222222211 223468999999
Q ss_pred cc-CCCHHHHHHHHHHHHHhhh
Q 029446 161 LK-GDGLYEGLDWLASTLKEMR 181 (193)
Q Consensus 161 ~~-~~gi~~~~~~l~~~~~~~~ 181 (193)
++ +.|+++++++|.+.+.+..
T Consensus 173 ~~~~~gi~~l~~~i~~~~~~~~ 194 (208)
T 2yc2_C 173 NPPGKDADAPFLSIATTFYRNY 194 (208)
T ss_dssp -------CHHHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHHHH
Confidence 99 9999999999999887554
No 93
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.97 E-value=1.9e-30 Score=184.87 Aligned_cols=163 Identities=17% Similarity=0.183 Sum_probs=123.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeE-EEEEEc--CEEEEEEecCCCCCCHHhHHhhhcCCCEEEE
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNV-EKVQYK--NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIY 90 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~-~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 90 (193)
...+||+++|.+|+|||||++++.++.+. .+.+|.+..+ ..+... .+.+.+||+||++++...+..+++++|++++
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 102 (201)
T 2gco_A 23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 102 (201)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEEEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEEE
Confidence 46789999999999999999999998876 3456666554 234443 4689999999999999999999999999999
Q ss_pred EEECCChhhHHHHH-HHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhC---------CCcCCCCce-EEEEec
Q 029446 91 VVDSLDRERIGKAK-QEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLG---------LFDLKNRKW-HIQGTC 159 (193)
Q Consensus 91 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~---------~~~~~~~~~-~~~~~S 159 (193)
|+|++++.+++.+. .|+..+... ..+.|+++|+||+|+.+.....+....+. ...++..+. +++++|
T Consensus 103 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 180 (201)
T 2gco_A 103 CFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECS 180 (201)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHH--STTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEee
Confidence 99999999999984 555554432 24799999999999986522111111100 000112233 799999
Q ss_pred cccCCCHHHHHHHHHHHHHh
Q 029446 160 ALKGDGLYEGLDWLASTLKE 179 (193)
Q Consensus 160 a~~~~gi~~~~~~l~~~~~~ 179 (193)
|++|+|+++++++|.+.+.+
T Consensus 181 A~~g~gi~~l~~~i~~~~l~ 200 (201)
T 2gco_A 181 AKTKEGVREVFEMATRAGLQ 200 (201)
T ss_dssp TTTCTTHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHhc
Confidence 99999999999999988753
No 94
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.97 E-value=2.4e-30 Score=184.87 Aligned_cols=163 Identities=20% Similarity=0.254 Sum_probs=120.3
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE-EEEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEE
Q 029446 13 FGNSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE-KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGL 88 (193)
Q Consensus 13 ~~~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~-~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 88 (193)
.....+||+++|.+|+|||||++++.++.+. .+.+|.+..+. .+.. ..+.+.+|||||++++...+..+++++|++
T Consensus 26 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 105 (204)
T 4gzl_A 26 FQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVF 105 (204)
T ss_dssp ----CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred hcCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEE
Confidence 3467899999999999999999999988776 44566654433 2233 456778999999999999999999999999
Q ss_pred EEEEECCChhhHHHHH-HHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCC---------cCCCCc-eEEEE
Q 029446 89 IYVVDSLDRERIGKAK-QEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLF---------DLKNRK-WHIQG 157 (193)
Q Consensus 89 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~---------~~~~~~-~~~~~ 157 (193)
++|+|++++.+++.+. .|+..+.... .+.|+++|+||+|+.+.....+........ .++..+ .++++
T Consensus 106 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 183 (204)
T 4gzl_A 106 LICFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLE 183 (204)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC--SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEE
Confidence 9999999999999997 5665554432 579999999999998653222211111100 011122 36999
Q ss_pred eccccCCCHHHHHHHHHHHH
Q 029446 158 TCALKGDGLYEGLDWLASTL 177 (193)
Q Consensus 158 ~Sa~~~~gi~~~~~~l~~~~ 177 (193)
|||++|+|+++++++|.+.+
T Consensus 184 ~SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 184 CSALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp CCTTTCTTHHHHHHHHHHTT
T ss_pred eeCCCCCCHHHHHHHHHHHh
Confidence 99999999999999998754
No 95
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.97 E-value=5.4e-30 Score=179.89 Aligned_cols=164 Identities=20% Similarity=0.221 Sum_probs=123.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE-EEEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEE
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE-KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIY 90 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~-~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 90 (193)
.+.++|+++|++|+|||||++++.++.+. .+.+|.+..+. .+.. ..+.+.+||+||++++...+..+++++|++++
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 82 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI 82 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEE
Confidence 46789999999999999999999988776 44566665443 2333 35678899999999999999999999999999
Q ss_pred EEECCChhhHHHHH-HHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhC---------CCcCCCCce-EEEEec
Q 029446 91 VVDSLDRERIGKAK-QEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLG---------LFDLKNRKW-HIQGTC 159 (193)
Q Consensus 91 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~---------~~~~~~~~~-~~~~~S 159 (193)
|+|++++.+++.+. .|+..+.... .+.|+++|+||+|+.+.....+...... ...++..+. +++++|
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 160 (186)
T 1mh1_A 83 CFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 160 (186)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHS--TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEECCChhhHHHHHHHHHHHHHHhC--CCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEec
Confidence 99999999999987 5666654432 3799999999999876421111111000 000112333 899999
Q ss_pred cccCCCHHHHHHHHHHHHHhh
Q 029446 160 ALKGDGLYEGLDWLASTLKEM 180 (193)
Q Consensus 160 a~~~~gi~~~~~~l~~~~~~~ 180 (193)
|++|+|+++++++|.+.+.+.
T Consensus 161 a~~g~gi~~l~~~l~~~~~~~ 181 (186)
T 1mh1_A 161 ALTQRGLKTVFDEAIRAVLCP 181 (186)
T ss_dssp TTTCTTHHHHHHHHHHHHSCC
T ss_pred CCCccCHHHHHHHHHHHHhcc
Confidence 999999999999999988543
No 96
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.97 E-value=9.8e-30 Score=181.82 Aligned_cols=157 Identities=17% Similarity=0.218 Sum_probs=122.9
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccceeEE-EEEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEEE
Q 029446 14 GNSEMRVVMLGLDAAGKTTILYKLHIGEVLS-TVPTIGFNVE-KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLI 89 (193)
Q Consensus 14 ~~~~~~v~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~-~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (193)
....+||+++|++|+|||||+++|.+..+.. +.+|.+..+. .+.. ..+.+.+|||||++.+...+..+++++|+++
T Consensus 25 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 104 (205)
T 1gwn_A 25 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 104 (205)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEE
Confidence 3577999999999999999999999988763 4677766553 2333 3578999999999999999999999999999
Q ss_pred EEEECCChhhHHHH-HHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--------------CCHh---HHHhhhCCCcCCCC
Q 029446 90 YVVDSLDRERIGKA-KQEFQAIIKDPFMLNSVILVFANKQDMKGA--------------MTPM---EVCEGLGLFDLKNR 151 (193)
Q Consensus 90 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~--------------~~~~---~~~~~~~~~~~~~~ 151 (193)
+|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.+. ...+ ++.+.++
T Consensus 105 lv~D~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~------- 175 (205)
T 1gwn_A 105 ICFDISRPETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIG------- 175 (205)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC--TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHT-------
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHC--CCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcC-------
Confidence 99999999999998 56666664432 57999999999999742 1111 1222221
Q ss_pred ceEEEEeccc-cCCCHHHHHHHHHHHHHh
Q 029446 152 KWHIQGTCAL-KGDGLYEGLDWLASTLKE 179 (193)
Q Consensus 152 ~~~~~~~Sa~-~~~gi~~~~~~l~~~~~~ 179 (193)
..++++|||+ +++|++++|+.+.+.+.+
T Consensus 176 ~~~~~e~SAk~~~~gv~~lf~~l~~~~l~ 204 (205)
T 1gwn_A 176 AATYIECSALQSENSVRDIFHVATLACVN 204 (205)
T ss_dssp CSEEEECCTTTCHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEeeeccCCcCHHHHHHHHHHHHhh
Confidence 1489999999 689999999999998764
No 97
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.97 E-value=7.9e-31 Score=184.40 Aligned_cols=166 Identities=17% Similarity=0.246 Sum_probs=118.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC--Ccc-ccccccceeEEEEEE-------cCEEEEEEecCCCCCCHHhHHhhhcCCC
Q 029446 17 EMRVVMLGLDAAGKTTILYKLHIG--EVL-STVPTIGFNVEKVQY-------KNVIFTVWDVGGQEKLRPLWRHYFNNTD 86 (193)
Q Consensus 17 ~~~v~v~G~~~~GKssli~~l~~~--~~~-~~~~t~~~~~~~~~~-------~~~~~~i~D~~g~~~~~~~~~~~~~~~d 86 (193)
.+||+++|++|||||||++++.+. .+. .+.+|.+.++..... ..+.+.+|||+|++++...+..++++++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 589999999999999999999985 343 456788877655432 4678999999999999988899999999
Q ss_pred EEEEEEECCCh-hhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCce----EEEEeccc
Q 029446 87 GLIYVVDSLDR-ERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKW----HIQGTCAL 161 (193)
Q Consensus 87 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Sa~ 161 (193)
++++|+|++++ .+++.+..|+..+.... .+.|+++|+||+|+.+...............++..++ +++++||+
T Consensus 82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 159 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAMKPWLFNIKARA--SSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNAT 159 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHHHHHHHHHHHC--TTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTT
T ss_pred EEEEEEeCCcchhHHHHHHHHHHHHHhhC--CCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEecc
Confidence 99999999987 57888988888876532 4789999999999876422111111111111223344 39999999
Q ss_pred cCC-CHHHHHHHHHHHHHhhhccC
Q 029446 162 KGD-GLYEGLDWLASTLKEMRAAG 184 (193)
Q Consensus 162 ~~~-gi~~~~~~l~~~~~~~~~~~ 184 (193)
++. |++++++.|.+.+.+....|
T Consensus 160 ~~~~~~~~l~~~i~~~~~~~~~~~ 183 (184)
T 2zej_A 160 EESDALAKLRKTIINESLNFKIRD 183 (184)
T ss_dssp SCCHHHHHHHHHHHHHHHCC----
T ss_pred cCchhHHHHHHHHHHHHhccccCC
Confidence 997 99999999999887665443
No 98
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.97 E-value=3.8e-30 Score=182.18 Aligned_cols=162 Identities=17% Similarity=0.131 Sum_probs=117.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCC--ccccccccceeE--EEEEEc--CEEEEEEecCCCCC-CHHhHHhhhcCCCE
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHIGE--VLSTVPTIGFNV--EKVQYK--NVIFTVWDVGGQEK-LRPLWRHYFNNTDG 87 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~~~--~~~~~~t~~~~~--~~~~~~--~~~~~i~D~~g~~~-~~~~~~~~~~~~d~ 87 (193)
...+||+++|++|+|||||+++|.+.. +....++++.+. ..+..+ .+.+.+|||+|+.. ++.....+++.+|+
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~ 83 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA 83 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCE
Confidence 467999999999999999999999633 333333444333 334443 45778999999876 45566778889999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcCCCCceEEEEeccccCCC
Q 029446 88 LIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDG 165 (193)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 165 (193)
+++|||++++.+|+.+..|+..+.......+.|+++|+||+|+.... ..++. +.+ +...++++++|||++|.|
T Consensus 84 ~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~-~~~----a~~~~~~~~e~SA~~g~~ 158 (192)
T 2cjw_A 84 YLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEG-RAX----AVVFDXKFIETSAAVQHN 158 (192)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHH-HHH----HHHTTCEEEECBTTTTBS
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHH-HHH----HHHhCCceEEeccccCCC
Confidence 99999999999999999888777653333578999999999986531 12211 111 112345899999999999
Q ss_pred HHHHHHHHHHHHHhhh
Q 029446 166 LYEGLDWLASTLKEMR 181 (193)
Q Consensus 166 i~~~~~~l~~~~~~~~ 181 (193)
|+++|+++.+.+....
T Consensus 159 v~~lf~~l~~~~~~~~ 174 (192)
T 2cjw_A 159 VKELFEGIVRQVRLRR 174 (192)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhc
Confidence 9999999999886544
No 99
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.97 E-value=4.1e-32 Score=193.23 Aligned_cols=157 Identities=22% Similarity=0.374 Sum_probs=118.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccee--EEEEEEcC--EEEEEEecCCCCCCHHhHHhhhcCCCEEE
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHIGEVLS-TVPTIGFN--VEKVQYKN--VIFTVWDVGGQEKLRPLWRHYFNNTDGLI 89 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (193)
++.+||+++|.+|+|||||+++|.+..+.. +.++.+.+ ...+.... +.+.+||+||++.+...+..+++++|+++
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 110 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 110 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEE
Confidence 467999999999999999999999988763 34555544 44455544 78999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC-----CHhHHHhhhCCCcCCCCceEEEEeccccCC
Q 029446 90 YVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM-----TPMEVCEGLGLFDLKNRKWHIQGTCALKGD 164 (193)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (193)
+|+|++++.+++.+..|+..+... ...+.|+++|+||+|+.+.. ..+++.. ..+++++++||+++.
T Consensus 111 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~--------~~~~~~~~vSA~~g~ 181 (199)
T 3l0i_B 111 VVYDVTDQESFNNVKQWLQEIDRY-ASENVNKLLVGNKCDLTTKKVVDYTTAKEFAD--------SLGIPFLETSAKNAT 181 (199)
T ss_dssp ECC-CCCSHHHHHHHHHHHHHHSC-C-CCSEEEEC-CCSSCC--CCCCSCC-CHHHH--------TTTCCBCCCCC---H
T ss_pred EEEECCCHHHHHHHHHHHHHHHHh-ccCCCCEEEEEECccCCccccCCHHHHHHHHH--------HcCCeEEEEECCCCC
Confidence 999999999999999988887554 33589999999999987542 1222333 334579999999999
Q ss_pred CHHHHHHHHHHHHHhh
Q 029446 165 GLYEGLDWLASTLKEM 180 (193)
Q Consensus 165 gi~~~~~~l~~~~~~~ 180 (193)
|+++++++|.+.+.++
T Consensus 182 gv~~l~~~l~~~l~~~ 197 (199)
T 3l0i_B 182 NVEQSFMTMAAEIKKR 197 (199)
T ss_dssp HHHHHHHHHTTTTTTT
T ss_pred CHHHHHHHHHHHHHHh
Confidence 9999999999887544
No 100
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.96 E-value=2.5e-28 Score=170.29 Aligned_cols=164 Identities=21% Similarity=0.136 Sum_probs=122.1
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccc--ccceeEEEEEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEE
Q 029446 13 FGNSEMRVVMLGLDAAGKTTILYKLHIGEVLS-TVP--TIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLI 89 (193)
Q Consensus 13 ~~~~~~~v~v~G~~~~GKssli~~l~~~~~~~-~~~--t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (193)
...+.++|+++|++|+|||||++++.+..+.. +.+ +.......+...+..+.+|||||++++...+..+++.+|+++
T Consensus 4 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 83 (178)
T 2lkc_A 4 MVERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTTMRARGAQVTDIVI 83 (178)
T ss_dssp TCCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSCSCCSSCCCCCEEE
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHHHHHHHHhhCCEEE
Confidence 34678999999999999999999999987763 233 333444567778889999999999999999888899999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCC--cCCCCc--eEEEEeccccCCC
Q 029446 90 YVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLF--DLKNRK--WHIQGTCALKGDG 165 (193)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~--~~~~~~--~~~~~~Sa~~~~g 165 (193)
+|+|++++...+.. ..+..+.. .+.|+++|+||+|+.+. ..+++...+... ..+..+ ++++++||++|+|
T Consensus 84 ~v~d~~~~~~~~~~-~~l~~~~~----~~~p~ilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 157 (178)
T 2lkc_A 84 LVVAADDGVMPQTV-EAINHAKA----ANVPIIVAINKMDKPEA-NPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEG 157 (178)
T ss_dssp EEEETTCCCCHHHH-HHHHHHGG----GSCCEEEEEETTTSSCS-CHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSSHH
T ss_pred EEEECCCCCcHHHH-HHHHHHHh----CCCCEEEEEECccCCcC-CHHHHHHHHHhcCcChhHcCCcccEEEEecCCCCC
Confidence 99999874322221 22333322 47899999999999874 333443333211 122333 7899999999999
Q ss_pred HHHHHHHHHHHHHhhhc
Q 029446 166 LYEGLDWLASTLKEMRA 182 (193)
Q Consensus 166 i~~~~~~l~~~~~~~~~ 182 (193)
+++++++|.+.+...+.
T Consensus 158 v~~l~~~l~~~~~~~~~ 174 (178)
T 2lkc_A 158 LDHLLEMILLVSEMEEL 174 (178)
T ss_dssp HHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhhhhhcc
Confidence 99999999998876553
No 101
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.96 E-value=4.6e-29 Score=187.43 Aligned_cols=159 Identities=19% Similarity=0.171 Sum_probs=118.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccc----cccccceeEEEEEEcCEEEEEEecCCCCCCHH---hHHhhhcCCCEEEEE
Q 029446 19 RVVMLGLDAAGKTTILYKLHIGEVLS----TVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRP---LWRHYFNNTDGLIYV 91 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~~~~~~----~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~---~~~~~~~~~d~~i~v 91 (193)
||+++|+.|+|||||++++.++.++. +.+|.+++...+. ..+++++|||+||++|+. .+..++++++++++|
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~IlV 79 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGALVYV 79 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEEC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEEc-cEEEEEEEECCCchhccchhhhhhhhccCCCEEEEE
Confidence 68999999999999999988765542 4688888877663 458999999999999975 468899999999999
Q ss_pred EECCChhhHHHHHHHHHHHHcC--CCCCCCeEEEEEeCCCCCCCCC----HhHHHhhhCCCcCC----CCceEEEEeccc
Q 029446 92 VDSLDRERIGKAKQEFQAIIKD--PFMLNSVILVFANKQDMKGAMT----PMEVCEGLGLFDLK----NRKWHIQGTCAL 161 (193)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~--~~~~~~p~ivv~nK~Dl~~~~~----~~~~~~~~~~~~~~----~~~~~~~~~Sa~ 161 (193)
||++++ +.+...||.+++.. ...++.|+++++||+|+.++.. .+++..+.+...++ ..+++|++|||+
T Consensus 80 ~Ditd~--~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eTSAk 157 (331)
T 3r7w_B 80 IDSQDE--YINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIF 157 (331)
T ss_dssp CCCSSC--TTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECCCSS
T ss_pred EECCch--HHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEeccC
Confidence 999987 33333444333221 1125799999999999987532 13344433323333 368899999999
Q ss_pred cCCCHHHHHHHHHHHHHhhh
Q 029446 162 KGDGLYEGLDWLASTLKEMR 181 (193)
Q Consensus 162 ~~~gi~~~~~~l~~~~~~~~ 181 (193)
+ .+|.++|..+.+.+.++.
T Consensus 158 d-~nV~eAFs~iv~~li~~~ 176 (331)
T 3r7w_B 158 D-HSIYEAFSRIVQKLIPEL 176 (331)
T ss_dssp S-SHHHHHHHHHHTTSSTTH
T ss_pred C-CcHHHHHHHHHHHHHhhH
Confidence 7 689999999988776543
No 102
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.96 E-value=6.4e-28 Score=175.04 Aligned_cols=161 Identities=16% Similarity=0.151 Sum_probs=114.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-c--ccccceeEEEEEEcCEEEEEEecCCC------CCC---HHhHHhhh
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHIGEVLS-T--VPTIGFNVEKVQYKNVIFTVWDVGGQ------EKL---RPLWRHYF 82 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~~-~--~~t~~~~~~~~~~~~~~~~i~D~~g~------~~~---~~~~~~~~ 82 (193)
...++|+++|.+|+|||||+|+|++..+.. . ..|.......+......+.+|||||+ +.. ...+..++
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 106 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTTITALA 106 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHHHHHHhh
Confidence 578999999999999999999999987752 1 23445555566667899999999998 432 12234456
Q ss_pred cCCCEEEEEEECCChhhHH--HHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhH----HHhhhCCCcCCCCc--eE
Q 029446 83 NNTDGLIYVVDSLDRERIG--KAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPME----VCEGLGLFDLKNRK--WH 154 (193)
Q Consensus 83 ~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~----~~~~~~~~~~~~~~--~~ 154 (193)
..+|++++|+|++++.+++ ....|+..+... ..+.|+++|+||+|+.+...... ..+.+ .+..+ ++
T Consensus 107 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~----~~~~~~~~~ 180 (228)
T 2qu8_A 107 HINGVILFIIDISEQCGLTIKEQINLFYSIKSV--FSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQI----LDNVKNPIK 180 (228)
T ss_dssp TSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTC--C-CCCEEEEEECGGGCC--CCCHHHHHHHHHH----HHHCCSCEE
T ss_pred ccccEEEEEEecccccCcchHHHHHHHHHHHHh--hcCCcEEEEEeCcccCCchhhHHHHHHHHHHH----HHhcCCCce
Confidence 8899999999999987764 233555555432 24789999999999976433211 11111 12223 68
Q ss_pred EEEeccccCCCHHHHHHHHHHHHHhhh
Q 029446 155 IQGTCALKGDGLYEGLDWLASTLKEMR 181 (193)
Q Consensus 155 ~~~~Sa~~~~gi~~~~~~l~~~~~~~~ 181 (193)
+++|||++|+|+++++++|.+.+.+.+
T Consensus 181 ~~~~SA~~g~gi~~l~~~l~~~i~~~~ 207 (228)
T 2qu8_A 181 FSSFSTLTGVGVEQAKITACELLKNDQ 207 (228)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred EEEEecccCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999887654
No 103
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.92 E-value=8e-31 Score=187.16 Aligned_cols=163 Identities=21% Similarity=0.270 Sum_probs=123.7
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE---EEEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEE
Q 029446 13 FGNSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE---KVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGL 88 (193)
Q Consensus 13 ~~~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~---~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 88 (193)
...+.+||+++|.+|+|||||++++.++.+. .+.+|.+..+. .+....+.+.+|||||++++...+..+++++|++
T Consensus 26 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i 105 (204)
T 3th5_A 26 FQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVF 105 (204)
Confidence 3467899999999999999999999988775 34455544332 2233467788999999999999999999999999
Q ss_pred EEEEECCChhhHHHHH-HHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHh---------HHHhhhCCCcCCCCce-EEEE
Q 029446 89 IYVVDSLDRERIGKAK-QEFQAIIKDPFMLNSVILVFANKQDMKGAMTPM---------EVCEGLGLFDLKNRKW-HIQG 157 (193)
Q Consensus 89 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~---------~~~~~~~~~~~~~~~~-~~~~ 157 (193)
++|+|++++.+++.+. .|+..+... . .+.|+++|+||+|+.+..... .+........++..+. ++++
T Consensus 106 ilv~D~~~~~s~~~~~~~~~~~l~~~-~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 183 (204)
T 3th5_A 106 LICFSLVSPASFENVRAKWYPEVRHH-C-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLE 183 (204)
Confidence 9999999999999987 555554332 1 378999999999997642111 1222222223344555 8999
Q ss_pred eccccCCCHHHHHHHHHHHH
Q 029446 158 TCALKGDGLYEGLDWLASTL 177 (193)
Q Consensus 158 ~Sa~~~~gi~~~~~~l~~~~ 177 (193)
|||++|+|+++++++|.+.+
T Consensus 184 vSA~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 184 CSALTQRGLKTVFDEAIRAV 203 (204)
Confidence 99999999999999998765
No 104
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.95 E-value=3.2e-28 Score=172.28 Aligned_cols=158 Identities=15% Similarity=0.126 Sum_probs=110.2
Q ss_pred hhcCCCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE--EEEEcCEEEEEEecCC----------CCCCHHh
Q 029446 11 VFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE--KVQYKNVIFTVWDVGG----------QEKLRPL 77 (193)
Q Consensus 11 ~~~~~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~~~~~~~i~D~~g----------~~~~~~~ 77 (193)
..+....++|+++|.+|+|||||+|++.+..+. .+.++.+.+.. .... +..+.+||||| ++.+...
T Consensus 17 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~-~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 95 (195)
T 1svi_A 17 QYPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYII-NDELHFVDVPGYGFAKVSKSEREAWGRM 95 (195)
T ss_dssp GSCCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEE-TTTEEEEECCCBCCCSSCHHHHHHHHHH
T ss_pred hCCCCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEE-CCcEEEEECCCCCccccCHHHHHHHHHH
Confidence 345567899999999999999999999988743 34444443322 2222 33699999999 6667777
Q ss_pred HHhhhcCC---CEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhH----HHhhhCCCcCCC
Q 029446 78 WRHYFNNT---DGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPME----VCEGLGLFDLKN 150 (193)
Q Consensus 78 ~~~~~~~~---d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~----~~~~~~~~~~~~ 150 (193)
+..+++.+ |++++|+|++++.++.... .+ ..+.. .+.|+++|+||+|+.+.....+ +.+.+. ..
T Consensus 96 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~-~~~~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~----~~ 166 (195)
T 1svi_A 96 IETYITTREELKAVVQIVDLRHAPSNDDVQ-MY-EFLKY---YGIPVIVIATKADKIPKGKWDKHAKVVRQTLN----ID 166 (195)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHHHHH-HH-HHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHT----CC
T ss_pred HHHHHhhhhcCCEEEEEEECCCCCCHHHHH-HH-HHHHH---cCCCEEEEEECcccCChHHHHHHHHHHHHHHc----cc
Confidence 77887777 9999999999877766542 12 22222 4789999999999987643322 222232 23
Q ss_pred CceEEEEeccccCCCHHHHHHHHHHHHH
Q 029446 151 RKWHIQGTCALKGDGLYEGLDWLASTLK 178 (193)
Q Consensus 151 ~~~~~~~~Sa~~~~gi~~~~~~l~~~~~ 178 (193)
.+.+++++||++++|+++++++|.+.+.
T Consensus 167 ~~~~~~~~Sa~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 167 PEDELILFSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp TTSEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred CCCceEEEEccCCCCHHHHHHHHHHHhc
Confidence 4668999999999999999999998763
No 105
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.95 E-value=3.9e-27 Score=162.75 Aligned_cols=147 Identities=21% Similarity=0.260 Sum_probs=109.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccc--cceeEEEEEEcCEEEEEEecCCCCCCH------HhHHhhhc--C
Q 029446 16 SEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPT--IGFNVEKVQYKNVIFTVWDVGGQEKLR------PLWRHYFN--N 84 (193)
Q Consensus 16 ~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t--~~~~~~~~~~~~~~~~i~D~~g~~~~~------~~~~~~~~--~ 84 (193)
..++|+++|++|+|||||++++.+..+. ...++ .......+...+..+.+|||||+.++. .....++. +
T Consensus 2 ~~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T 2wji_A 2 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEK 81 (165)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETTEEEEEEECCCCSCSSSSSHHHHHHHHHHHHHC
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcchhHHHHHHHHhcCC
Confidence 3589999999999999999999987654 23333 334445566678899999999998774 34456664 8
Q ss_pred CCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC----CCHhHHHhhhCCCcCCCCceEEEEecc
Q 029446 85 TDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA----MTPMEVCEGLGLFDLKNRKWHIQGTCA 160 (193)
Q Consensus 85 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (193)
+|++++|+|+++.+. ...|+..+.. .+.|+++|+||+|+... .+.+++.+.++ ++++++||
T Consensus 82 ~~~~i~v~D~~~~~~---~~~~~~~~~~----~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~--------~~~~~~SA 146 (165)
T 2wji_A 82 PDLVVNIVDATALER---NLYLTLQLME----MGANLLLALNKMDLAKSLGIEIDVDKLEKILG--------VKVVPLSA 146 (165)
T ss_dssp CSEEEEEEETTCHHH---HHHHHHHHHH----TTCCEEEEEECHHHHHHTTCCCCHHHHHHHHT--------SCEEECBG
T ss_pred CCEEEEEecCCchhH---hHHHHHHHHh----cCCCEEEEEEchHhccccChhhHHHHHHHHhC--------CCEEEEEc
Confidence 999999999987543 3446655543 36899999999998542 12334444443 47999999
Q ss_pred ccCCCHHHHHHHHHHHH
Q 029446 161 LKGDGLYEGLDWLASTL 177 (193)
Q Consensus 161 ~~~~gi~~~~~~l~~~~ 177 (193)
++|+|++++|++|.+.+
T Consensus 147 ~~~~~v~~l~~~l~~~~ 163 (165)
T 2wji_A 147 AKKMGIEELKKAISIAV 163 (165)
T ss_dssp GGTBSHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 99999999999998875
No 106
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.95 E-value=4.8e-28 Score=171.13 Aligned_cols=162 Identities=20% Similarity=0.199 Sum_probs=113.8
Q ss_pred hhcCCCccEEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEE-EEEcCEEEEEEecCC----------CCCCHHhHH
Q 029446 11 VFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEK-VQYKNVIFTVWDVGG----------QEKLRPLWR 79 (193)
Q Consensus 11 ~~~~~~~~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~-~~~~~~~~~i~D~~g----------~~~~~~~~~ 79 (193)
..+....++|+++|.+|+|||||+|++.+.....+.++.+.+... .......+.+||||| ++.+...+.
T Consensus 17 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~ 96 (195)
T 3pqc_A 17 DYPPPLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLVNSKYYFVDLPGYGYAKVSKKERMLWKRLVE 96 (195)
T ss_dssp CCCCCTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEEETTTEEEEECCCBSSSCCCHHHHHHHHHHHH
T ss_pred hCCCCCCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEEECCcEEEEECCCCccccCChhhHHHHHHHHH
Confidence 345567899999999999999999999998866555555544332 222345688999999 556777777
Q ss_pred hhhcCC---CEEEEEEECCChhhHHH--HHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceE
Q 029446 80 HYFNNT---DGLIYVVDSLDRERIGK--AKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWH 154 (193)
Q Consensus 80 ~~~~~~---d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 154 (193)
.+++.+ |++++|+|+++..+... +..|+.. .+.|+++|+||+|+.+........+...........++
T Consensus 97 ~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~-------~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 169 (195)
T 3pqc_A 97 DYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKS-------LNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYT 169 (195)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH-------TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSC
T ss_pred HHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHH-------cCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCc
Confidence 777766 99999999987543332 2233322 26899999999999865443332222211101113457
Q ss_pred EEEeccccCCCHHHHHHHHHHHHHh
Q 029446 155 IQGTCALKGDGLYEGLDWLASTLKE 179 (193)
Q Consensus 155 ~~~~Sa~~~~gi~~~~~~l~~~~~~ 179 (193)
++++||++|+|+++++++|.+.+.+
T Consensus 170 ~~~~Sa~~~~gv~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 170 IIPTSSVTGEGISELLDLISTLLKE 194 (195)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred eEEEecCCCCCHHHHHHHHHHHhhc
Confidence 9999999999999999999998754
No 107
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.95 E-value=2.5e-27 Score=164.86 Aligned_cols=151 Identities=19% Similarity=0.218 Sum_probs=111.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCcc--c-c-ccccceeEEEEEEcCEEEEEEecCCCCCCHHh--------HHhhhc
Q 029446 16 SEMRVVMLGLDAAGKTTILYKLHIGEVL--S-T-VPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPL--------WRHYFN 83 (193)
Q Consensus 16 ~~~~v~v~G~~~~GKssli~~l~~~~~~--~-~-~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~~~ 83 (193)
..++|+++|.+|+|||||+|++.+.... . + ..|.+.....+..++..+.+|||||+.++... ...+++
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 82 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIE 82 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEEEEEECCCcccchhHHHHHHHHHHHHHHH
Confidence 4589999999999999999999987643 1 2 22334444566777888999999998764211 124578
Q ss_pred CCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccC
Q 029446 84 NTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKG 163 (193)
Q Consensus 84 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (193)
++|++++|+|++++.+++. ..|+..+... ...+.|+++|+||+|+.+... ...+..+.++++|||++|
T Consensus 83 ~ad~~i~v~D~~~~~s~~~-~~~~~~~~~~-~~~~~p~ilv~NK~Dl~~~~~----------~~~~~~~~~~~~~SA~~g 150 (172)
T 2gj8_A 83 QADRVLFMVDGTTTDAVDP-AEIWPEFIAR-LPAKLPITVVRNKADITGETL----------GMSEVNGHALIRLSARTG 150 (172)
T ss_dssp TCSEEEEEEETTTCCCCSH-HHHCHHHHHH-SCTTCCEEEEEECHHHHCCCC----------EEEEETTEEEEECCTTTC
T ss_pred hCCEEEEEEECCCCCCHHH-HHHHHHHHHh-cccCCCEEEEEECccCCcchh----------hhhhccCCceEEEeCCCC
Confidence 9999999999998887663 4566655443 225799999999999864311 111224568999999999
Q ss_pred CCHHHHHHHHHHHHH
Q 029446 164 DGLYEGLDWLASTLK 178 (193)
Q Consensus 164 ~gi~~~~~~l~~~~~ 178 (193)
+|+++++++|.+.+.
T Consensus 151 ~gv~~l~~~l~~~~~ 165 (172)
T 2gj8_A 151 EGVDVLRNHLKQSMG 165 (172)
T ss_dssp TTHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHhh
Confidence 999999999988764
No 108
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.95 E-value=8.1e-28 Score=181.64 Aligned_cols=162 Identities=17% Similarity=0.197 Sum_probs=121.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCC--cc--ccccccceeEEEEEE-cCEEEEEEecCCCCCC-----HHhHHhhhcCC
Q 029446 16 SEMRVVMLGLDAAGKTTILYKLHIGE--VL--STVPTIGFNVEKVQY-KNVIFTVWDVGGQEKL-----RPLWRHYFNNT 85 (193)
Q Consensus 16 ~~~~v~v~G~~~~GKssli~~l~~~~--~~--~~~~t~~~~~~~~~~-~~~~~~i~D~~g~~~~-----~~~~~~~~~~~ 85 (193)
..+||+++|++|+|||||++++.++. +. .+.+|.+..+..+.. +...+.+||+||++.+ ...+..+++++
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~a 81 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFMENYFTKQKDHIFQMV 81 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHHHHHHHTTTHHHHHTTC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcHHHhhhhhhhHHHHHhccC
Confidence 46899999999999999999998873 32 356888988888775 6799999999999988 67788888999
Q ss_pred CEEEEEEECCChhhHHHHHHHHHHHHcC-CCCCCCeEEEEEeCCCCCCCCCHhH---HHhhhCCCcCCCC---ceEEEEe
Q 029446 86 DGLIYVVDSLDRERIGKAKQEFQAIIKD-PFMLNSVILVFANKQDMKGAMTPME---VCEGLGLFDLKNR---KWHIQGT 158 (193)
Q Consensus 86 d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~p~ivv~nK~Dl~~~~~~~~---~~~~~~~~~~~~~---~~~~~~~ 158 (193)
|++++|+|++++.+++.+..|...+... ...++.|+++|+||+|+.+.....+ +........++.. .+++++|
T Consensus 82 d~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~~~t 161 (307)
T 3r7w_A 82 QVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPT 161 (307)
T ss_dssp SEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEEEEC
T ss_pred CEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEEEEe
Confidence 9999999999999999886654333221 0125799999999999987322210 1111111112233 3689999
Q ss_pred ccccCCCHHHHHHHHHHHHH
Q 029446 159 CALKGDGLYEGLDWLASTLK 178 (193)
Q Consensus 159 Sa~~~~gi~~~~~~l~~~~~ 178 (193)
||++ .|+.+++..+.+.+.
T Consensus 162 Sa~~-~~i~e~~~~iv~~li 180 (307)
T 3r7w_A 162 SIWD-ESLYKAWSQIVCSLI 180 (307)
T ss_dssp CTTS-SHHHHHHHHHHHTTC
T ss_pred eecC-ChHHHHHHHHHHHHc
Confidence 9999 889999988877553
No 109
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.95 E-value=3.6e-27 Score=161.76 Aligned_cols=147 Identities=17% Similarity=0.185 Sum_probs=106.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc--c--ccccceeEEEEEEcCEEEEEEecCCCCC-------CHHhHHhhhcCCC
Q 029446 18 MRVVMLGLDAAGKTTILYKLHIGEVLS--T--VPTIGFNVEKVQYKNVIFTVWDVGGQEK-------LRPLWRHYFNNTD 86 (193)
Q Consensus 18 ~~v~v~G~~~~GKssli~~l~~~~~~~--~--~~t~~~~~~~~~~~~~~~~i~D~~g~~~-------~~~~~~~~~~~~d 86 (193)
+||+++|++|+|||||++++.+..+.. . ..+.......+...+..+.+|||||+.. +...+..+++.+|
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 81 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDAE 81 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTCS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCceEEEEECCCCCCccchHHHHHHHHHHHHHhCC
Confidence 589999999999999999999887542 1 2233344556667788999999999887 3555677889999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCce-EEEEeccccCCC
Q 029446 87 GLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKW-HIQGTCALKGDG 165 (193)
Q Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~g 165 (193)
++++|+|++++.+... .++..++.. .+.|+++|+||+|+.+.. ++. ..+ . ..+. +++++||++|.|
T Consensus 82 ~~i~v~d~~~~~~~~~--~~~~~~~~~---~~~p~ilv~nK~Dl~~~~--~~~-~~~----~-~~~~~~~~~~Sa~~~~g 148 (161)
T 2dyk_A 82 VVLFAVDGRAELTQAD--YEVAEYLRR---KGKPVILVATKVDDPKHE--LYL-GPL----Y-GLGFGDPIPTSSEHARG 148 (161)
T ss_dssp EEEEEEESSSCCCHHH--HHHHHHHHH---HTCCEEEEEECCCSGGGG--GGC-GGG----G-GGSSCSCEECBTTTTBS
T ss_pred EEEEEEECCCcccHhH--HHHHHHHHh---cCCCEEEEEECcccccch--HhH-HHH----H-hCCCCCeEEEecccCCC
Confidence 9999999987544322 334444332 468999999999987651 111 111 1 2233 689999999999
Q ss_pred HHHHHHHHHHHH
Q 029446 166 LYEGLDWLASTL 177 (193)
Q Consensus 166 i~~~~~~l~~~~ 177 (193)
+++++++|.+.+
T Consensus 149 v~~l~~~l~~~l 160 (161)
T 2dyk_A 149 LEELLEAIWERL 160 (161)
T ss_dssp HHHHHHHHHHHC
T ss_pred hHHHHHHHHHhC
Confidence 999999998865
No 110
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.95 E-value=2.3e-28 Score=172.13 Aligned_cols=162 Identities=17% Similarity=0.190 Sum_probs=111.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEEEEEEcCEEEEEEecCC-----------CCCCHHhHHhhhcC-
Q 029446 18 MRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVEKVQYKNVIFTVWDVGG-----------QEKLRPLWRHYFNN- 84 (193)
Q Consensus 18 ~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~i~D~~g-----------~~~~~~~~~~~~~~- 84 (193)
+||+++|++|+|||||++++.+..+. .+.++.......+... .+.+||||| ++.+...+..++++
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWK--NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDN 79 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEEEET--TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeEEEecC--CEEEEECCCccccccCCHHHHHHHHHHHHHHHHhh
Confidence 68999999999999999999998876 3345544444444444 789999999 56667777777766
Q ss_pred CCEEEEEEECCChhhHHHHH-HHHHH--------HHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcCCCCce
Q 029446 85 TDGLIYVVDSLDRERIGKAK-QEFQA--------IIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKW 153 (193)
Q Consensus 85 ~d~~i~v~d~~~~~s~~~~~-~~~~~--------~~~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~ 153 (193)
++++++|+++.+..+++++. .|... +.......+.|+++|+||+|+.+.. ..+++.+.++.. ......
T Consensus 80 ~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~ 158 (190)
T 2cxx_A 80 AKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNVQEVINFLAEKFEVP-LSEIDK 158 (190)
T ss_dssp GGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCHHHHHHHHHHHHTCC-GGGHHH
T ss_pred hccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcHHHHHHHHHHHhhhh-hhccCC
Confidence 66666666666666776653 33221 1111112578999999999998753 233445555431 112234
Q ss_pred EEEEeccccCCCHHHHHHHHHHHHHhhhc
Q 029446 154 HIQGTCALKGDGLYEGLDWLASTLKEMRA 182 (193)
Q Consensus 154 ~~~~~Sa~~~~gi~~~~~~l~~~~~~~~~ 182 (193)
++++|||++|+|+++++++|.+.+.+...
T Consensus 159 ~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~ 187 (190)
T 2cxx_A 159 VFIPISAKFGDNIERLKNRIFEVIRERQG 187 (190)
T ss_dssp HEEECCTTTCTTHHHHHHHHHHHHHHC--
T ss_pred cEEEEecCCCCCHHHHHHHHHHhcchhhc
Confidence 68999999999999999999999876553
No 111
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.95 E-value=8.9e-27 Score=177.50 Aligned_cols=163 Identities=19% Similarity=0.218 Sum_probs=122.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE-EEEEc--CEEEEEEecCCCCCCHHhHHhhhcCCCEEEE
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE-KVQYK--NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIY 90 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~-~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 90 (193)
...++|+++|.+|+|||||++++.++.+. .+.+|++..+. .+..+ .+.+.+||+||++.+...+..+++++|++++
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 232 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLI 232 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEE
T ss_pred cceeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEE
Confidence 46799999999999999999999988776 45566655443 23333 4567799999999999999999999999999
Q ss_pred EEECCChhhHHHHH-HHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCC---------CcCCCCce-EEEEec
Q 029446 91 VVDSLDRERIGKAK-QEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGL---------FDLKNRKW-HIQGTC 159 (193)
Q Consensus 91 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~---------~~~~~~~~-~~~~~S 159 (193)
|+|++++.+++.+. .|+..+.... .+.|+++|+||+|+.+.....+....... ..++..+. ++++||
T Consensus 233 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 310 (332)
T 2wkq_A 233 CFSLVSPASFHHVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 310 (332)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHC--TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhhC--CCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEec
Confidence 99999999999987 4555554422 38999999999998654211111111000 00112233 899999
Q ss_pred cccCCCHHHHHHHHHHHHHh
Q 029446 160 ALKGDGLYEGLDWLASTLKE 179 (193)
Q Consensus 160 a~~~~gi~~~~~~l~~~~~~ 179 (193)
|++|+|++++++.|.+.+..
T Consensus 311 a~~~~gi~~l~~~l~~~~~~ 330 (332)
T 2wkq_A 311 ALTQRGLKTVFDEAIRAVLC 330 (332)
T ss_dssp TTTCTTHHHHHHHHHHHHHC
T ss_pred CCCCcCHHHHHHHHHHHHhc
Confidence 99999999999999988754
No 112
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.94 E-value=5e-27 Score=166.93 Aligned_cols=161 Identities=20% Similarity=0.337 Sum_probs=124.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeE--EEEEEcC--EEEEEEecCCCCCCHHhHHhhhcCCCEEE
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNV--EKVQYKN--VIFTVWDVGGQEKLRPLWRHYFNNTDGLI 89 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (193)
+..++|+++|++|||||||++++.+..+. .+.+|.+... ..+...+ +.+.+||++|++.++..+..+++++++++
T Consensus 3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 82 (199)
T 2f9l_A 3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL 82 (199)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEE
Confidence 35689999999999999999999998876 4456766544 3455544 67889999999999888888899999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcCCCCceEEEEeccccCCCHH
Q 029446 90 YVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLY 167 (193)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 167 (193)
+|+|+++..+++.+..|+..+... ...+.|+++|+||+|+.+.. ...+ .+.+ +...++.++++||+++.|++
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~i~~v~nK~Dl~~~~~~~~~~-a~~l----~~~~~~~~~d~Sal~~~~i~ 156 (199)
T 2f9l_A 83 LVYDIAKHLTYENVERWLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTDE-ARAF----AEKNNLSFIETSALDSTNVE 156 (199)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHH-HHHH----HHHTTCEEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-cCCCCeEEEEEECcccccccCcCHHH-HHHH----HHHcCCeEEEEeCCCCCCHH
Confidence 999999999998888887766432 22578999999999987532 2222 2222 12334589999999999999
Q ss_pred HHHHHHHHHHHhhh
Q 029446 168 EGLDWLASTLKEMR 181 (193)
Q Consensus 168 ~~~~~l~~~~~~~~ 181 (193)
+++++|.+.+.+..
T Consensus 157 ~l~~~l~~~~~~~~ 170 (199)
T 2f9l_A 157 EAFKNILTEIYRIV 170 (199)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999887654
No 113
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.94 E-value=6.7e-28 Score=177.69 Aligned_cols=162 Identities=11% Similarity=0.109 Sum_probs=114.2
Q ss_pred cCCCccEEEEEcCC---------CCCHHHHHHHHhcC---Ccc-cccccc-ceeEE------------------EEEEcC
Q 029446 13 FGNSEMRVVMLGLD---------AAGKTTILYKLHIG---EVL-STVPTI-GFNVE------------------KVQYKN 60 (193)
Q Consensus 13 ~~~~~~~v~v~G~~---------~~GKssli~~l~~~---~~~-~~~~t~-~~~~~------------------~~~~~~ 60 (193)
.....+||+++|.+ |||||||+++|.++ .+. .+.+|+ +.++. .++...
T Consensus 15 ~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 94 (255)
T 3c5h_A 15 YFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVE 94 (255)
T ss_dssp SCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC--------
T ss_pred CCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcE
Confidence 34677999999999 99999999999984 443 334443 22211 123456
Q ss_pred EEEEEEe-----------------------cCCCCCCHHhHHhhhc---------------------CCCEEEEEEECCC
Q 029446 61 VIFTVWD-----------------------VGGQEKLRPLWRHYFN---------------------NTDGLIYVVDSLD 96 (193)
Q Consensus 61 ~~~~i~D-----------------------~~g~~~~~~~~~~~~~---------------------~~d~~i~v~d~~~ 96 (193)
+.+.+|| ++|++++...+..++. ++|++++|||+++
T Consensus 95 ~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~ 174 (255)
T 3c5h_A 95 CKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSR 174 (255)
T ss_dssp -CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC
T ss_pred EEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCC
Confidence 8899999 6677777777777776 7999999999999
Q ss_pred h--hhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHHHHH
Q 029446 97 R--ERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLA 174 (193)
Q Consensus 97 ~--~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~ 174 (193)
+ .+++.+..|+..+.......+.|+++|+||+|+.+....++.. .+.. ...++++++|||++|.|++++|++|.
T Consensus 175 ~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~-~~~~---~~~~~~~~e~SAk~g~gv~elf~~l~ 250 (255)
T 3c5h_A 175 GMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAH-TFAL---SKKNLQVVETSARSNVNVDLAFSTLV 250 (255)
T ss_dssp ----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHHHHHH-HHHH---TSSSCCEEECBTTTTBSHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHHHHHH-HHHH---hcCCCeEEEEECCCCCCHHHHHHHHH
Confidence 8 9999999988887653222578999999999986542222111 1111 11356899999999999999999999
Q ss_pred HHHH
Q 029446 175 STLK 178 (193)
Q Consensus 175 ~~~~ 178 (193)
+.+.
T Consensus 251 ~~l~ 254 (255)
T 3c5h_A 251 QLID 254 (255)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 8764
No 114
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.94 E-value=5.3e-26 Score=159.92 Aligned_cols=152 Identities=20% Similarity=0.259 Sum_probs=115.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccc--eeEEEEEEcCEEEEEEecCCCCCCH------HhHHhhhc--
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIG--FNVEKVQYKNVIFTVWDVGGQEKLR------PLWRHYFN-- 83 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~--~~~~~~~~~~~~~~i~D~~g~~~~~------~~~~~~~~-- 83 (193)
.+.++|+++|++|+|||||+++|.+..+. ...++.. .....+...+..+.+|||||+..+. ..+..++.
T Consensus 5 ~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 84 (188)
T 2wjg_A 5 MKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINE 84 (188)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSSHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCCcEEEEEECCCcCccccccHHHHHHHHHHhcc
Confidence 46789999999999999999999987654 3334333 4445667778999999999998874 44556664
Q ss_pred CCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC----CCHhHHHhhhCCCcCCCCceEEEEec
Q 029446 84 NTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA----MTPMEVCEGLGLFDLKNRKWHIQGTC 159 (193)
Q Consensus 84 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (193)
.++++++|+|+++ ++....|+..+.. .+.|+++|+||+|+... ...+++.+.++ ++++++|
T Consensus 85 ~~~~~i~v~d~~~---~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~--------~~~~~~S 149 (188)
T 2wjg_A 85 KPDLVVNIVDATA---LERNLYLTLQLME----MGANLLLALNKMDLAKSLGIEIDVDKLEKILG--------VKVVPLS 149 (188)
T ss_dssp CCSEEEEEEEGGG---HHHHHHHHHHHHT----TTCCEEEEEECHHHHHHTTCCCCHHHHHHHHT--------SCEEECB
T ss_pred CCCEEEEEecchh---HHHHHHHHHHHHh----cCCCEEEEEEhhhccccccchHHHHHHHHHhC--------CCeEEEE
Confidence 5999999999875 5556666666654 47899999999998642 23344444443 3799999
Q ss_pred cccCCCHHHHHHHHHHHHHhhh
Q 029446 160 ALKGDGLYEGLDWLASTLKEMR 181 (193)
Q Consensus 160 a~~~~gi~~~~~~l~~~~~~~~ 181 (193)
|++++|++++++++.+.+.+..
T Consensus 150 a~~~~~v~~l~~~i~~~~~~~~ 171 (188)
T 2wjg_A 150 AAKKMGIEELKKAISIAVKDKK 171 (188)
T ss_dssp GGGTBSHHHHHHHHHHHHTTC-
T ss_pred ecCCCCHHHHHHHHHHHHHhcc
Confidence 9999999999999999886654
No 115
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.94 E-value=1.1e-25 Score=165.87 Aligned_cols=149 Identities=21% Similarity=0.275 Sum_probs=113.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCcc-cccc--ccceeEEEEEEcCEEEEEEecCCCCCCHH------hHHhhh--c
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVP--TIGFNVEKVQYKNVIFTVWDVGGQEKLRP------LWRHYF--N 83 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~~~i~D~~g~~~~~~------~~~~~~--~ 83 (193)
.+.++|+++|++|+|||||+|+|++..+. .+.| |.......+...+..+.+|||||+..+.. ....++ .
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~ 82 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLKG 82 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHhhc
Confidence 45789999999999999999999987764 2233 33344455666789999999999887754 334555 5
Q ss_pred CCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC----CCHhHHHhhhCCCcCCCCceEEEEec
Q 029446 84 NTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA----MTPMEVCEGLGLFDLKNRKWHIQGTC 159 (193)
Q Consensus 84 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (193)
++|++++|+|+++.++.. .++..+.. .+.|+++|+||+|+... .+..++.+.++ ++++++|
T Consensus 83 ~~d~ii~V~D~t~~~~~~---~~~~~l~~----~~~pvilv~NK~Dl~~~~~i~~~~~~l~~~lg--------~~vi~~S 147 (258)
T 3a1s_A 83 DADLVILVADSVNPEQSL---YLLLEILE----MEKKVILAMTAIDEAKKTGMKIDRYELQKHLG--------IPVVFTS 147 (258)
T ss_dssp CCSEEEEEEETTSCHHHH---HHHHHHHT----TTCCEEEEEECHHHHHHTTCCBCHHHHHHHHC--------SCEEECC
T ss_pred CCCEEEEEeCCCchhhHH---HHHHHHHh----cCCCEEEEEECcCCCCccchHHHHHHHHHHcC--------CCEEEEE
Confidence 899999999999866543 35555543 37899999999998642 22345555554 4799999
Q ss_pred cccCCCHHHHHHHHHHHHH
Q 029446 160 ALKGDGLYEGLDWLASTLK 178 (193)
Q Consensus 160 a~~~~gi~~~~~~l~~~~~ 178 (193)
|++|.|++++++++.+.+.
T Consensus 148 A~~g~gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 148 SVTGEGLEELKEKIVEYAQ 166 (258)
T ss_dssp TTTCTTHHHHHHHHHHHHH
T ss_pred eeCCcCHHHHHHHHHHHhh
Confidence 9999999999999998765
No 116
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.94 E-value=5.1e-27 Score=185.07 Aligned_cols=164 Identities=21% Similarity=0.299 Sum_probs=111.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCcccccccccee----EEEEEEcCEEEEEEecCCCC--------CCHHhHHhhhcC
Q 029446 17 EMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFN----VEKVQYKNVIFTVWDVGGQE--------KLRPLWRHYFNN 84 (193)
Q Consensus 17 ~~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~----~~~~~~~~~~~~i~D~~g~~--------~~~~~~~~~~~~ 84 (193)
.++|+++|.+|+|||||+|+|++.......++.|.+ +..+.+.+..+.+|||||+. .+...+..++++
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ 82 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDE 82 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHh
Confidence 368999999999999999999987765444444443 44455567889999999986 566677888899
Q ss_pred CCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCce-EEEEeccccC
Q 029446 85 TDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKW-HIQGTCALKG 163 (193)
Q Consensus 85 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~ 163 (193)
+|++++|+|+.++.+... .++..++.. .++|+++|+||+|+.+... +.. .+...+. +++++||++|
T Consensus 83 ad~il~vvD~~~~~~~~d--~~~~~~l~~---~~~pvilv~NK~D~~~~~~--~~~------~~~~lg~~~~~~iSA~~g 149 (436)
T 2hjg_A 83 ADVIIFMVNGREGVTAAD--EEVAKILYR---TKKPVVLAVNKLDNTEMRA--NIY------DFYSLGFGEPYPISGTHG 149 (436)
T ss_dssp CSEEEEEEETTTCSCHHH--HHHHHHHTT---CCSCEEEEEECCCC-------CCC------SSGGGSSCCCEECBTTTT
T ss_pred CCEEEEEEeCCCCCCHHH--HHHHHHHHH---cCCCEEEEEECccCccchh--hHH------HHHHcCCCCeEEEeCcCC
Confidence 999999999987665443 455555543 5789999999999875421 000 0111222 5899999999
Q ss_pred CCHHHHHHHHHHHHHhhh------------ccCCCCCCcCCC
Q 029446 164 DGLYEGLDWLASTLKEMR------------AAGYSSVGTSSF 193 (193)
Q Consensus 164 ~gi~~~~~~l~~~~~~~~------------~~~~~~~~~~~~ 193 (193)
.|++++++++.+.+.+.. --|.+++|||||
T Consensus 150 ~gv~~L~~~i~~~l~~~~~~~~~~~~~ki~lvG~~nvGKSSL 191 (436)
T 2hjg_A 150 LGLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSL 191 (436)
T ss_dssp BTHHHHHHHHHHTGGGCCSSCCCTTCEEEEEECSTTSSHHHH
T ss_pred CChHHHHHHHHHhcCccccccccccCcEEEEEcCCCCCHHHH
Confidence 999999999999886422 128899999874
No 117
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.94 E-value=4.1e-26 Score=180.06 Aligned_cols=165 Identities=19% Similarity=0.191 Sum_probs=113.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcccc----ccccceeEEEEEEcCEEEEEEecCCCCC---------CHHhHHhhhcC
Q 029446 18 MRVVMLGLDAAGKTTILYKLHIGEVLST----VPTIGFNVEKVQYKNVIFTVWDVGGQEK---------LRPLWRHYFNN 84 (193)
Q Consensus 18 ~~v~v~G~~~~GKssli~~l~~~~~~~~----~~t~~~~~~~~~~~~~~~~i~D~~g~~~---------~~~~~~~~~~~ 84 (193)
.+|+++|.+|+|||||+|+|++...... +.|.+..+..+.+.+..+.+|||||... ++..+..++++
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ 81 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIRE 81 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHHHh
Confidence 4799999999999999999998875322 2333445667778889999999999764 24556778899
Q ss_pred CCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCce-EEEEeccccC
Q 029446 85 TDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKW-HIQGTCALKG 163 (193)
Q Consensus 85 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~ 163 (193)
+|++++|+|++++.+... .++..++.. .++|+++|+||+|+.... ..+...++. ..++ +++++||++|
T Consensus 82 ad~il~V~D~~~~~~~~d--~~i~~~l~~---~~~p~ilv~NK~D~~~~~-~~~~~~~~~-----~lg~~~~~~iSA~~g 150 (439)
T 1mky_A 82 ADLVLFVVDGKRGITKED--ESLADFLRK---STVDTILVANKAENLREF-EREVKPELY-----SLGFGEPIPVSAEHN 150 (439)
T ss_dssp CSEEEEEEETTTCCCHHH--HHHHHHHHH---HTCCEEEEEESCCSHHHH-HHHTHHHHG-----GGSSCSCEECBTTTT
T ss_pred CCEEEEEEECCCCCCHHH--HHHHHHHHH---cCCCEEEEEeCCCCcccc-HHHHHHHHH-----hcCCCCEEEEeccCC
Confidence 999999999987544332 233333332 368999999999975320 111101111 1222 4799999999
Q ss_pred CCHHHHHHHHHHHHHhhh----------------ccCCCCCCcCCC
Q 029446 164 DGLYEGLDWLASTLKEMR----------------AAGYSSVGTSSF 193 (193)
Q Consensus 164 ~gi~~~~~~l~~~~~~~~----------------~~~~~~~~~~~~ 193 (193)
.|++++++++.+.+.+.. --|.+++|||||
T Consensus 151 ~gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKSTL 196 (439)
T 1mky_A 151 INLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTL 196 (439)
T ss_dssp BSHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHHHH
T ss_pred CCHHHHHHHHHHhcccccccchhccccccCceEEEECCCCCCHHHH
Confidence 999999999999887432 117788888864
No 118
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.93 E-value=4.5e-26 Score=161.05 Aligned_cols=158 Identities=19% Similarity=0.348 Sum_probs=122.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE--EEEEcC--EEEEEEecCCCCCCHHhHHhhhcCCCEEE
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE--KVQYKN--VIFTVWDVGGQEKLRPLWRHYFNNTDGLI 89 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (193)
+..++|+++|++|||||||++++.+..+. .+.+|.+.++. .+..++ +.+.+||++|++++...+..+++++++++
T Consensus 27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 106 (191)
T 1oix_A 27 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGAL 106 (191)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEE
Confidence 45689999999999999999999998876 45677776543 455544 56678999999999988888899999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCcCCCCceEEEEeccccCCCHHH
Q 029446 90 YVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT-PMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYE 168 (193)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 168 (193)
+|+|.++..+++++..|+..+... ...+.|+++++||+|+.+... ..+..+.+. ...++.++++||+++.|+++
T Consensus 107 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~----~~~~~~~ld~Sald~~~v~~ 181 (191)
T 1oix_A 107 LVYDIAKHLTYENVERWLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTDEARAFA----EKNGLSFIETSALDSTNVEA 181 (191)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHH----HHTTCEEEECCTTTCTTHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccCHHHHHHHH----HHcCCEEEEEeCCCCCCHHH
Confidence 999999999998887777665432 225789999999999875321 112222221 23345899999999999999
Q ss_pred HHHHHHHHH
Q 029446 169 GLDWLASTL 177 (193)
Q Consensus 169 ~~~~l~~~~ 177 (193)
+++.|.+.+
T Consensus 182 l~~~l~~~i 190 (191)
T 1oix_A 182 AFQTILTEI 190 (191)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999998765
No 119
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.93 E-value=1.5e-25 Score=169.29 Aligned_cols=161 Identities=19% Similarity=0.140 Sum_probs=120.1
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhcCCccccc----cccceeEEEEEEc-CEEEEEEecCCCCCCH----------Hh
Q 029446 13 FGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTV----PTIGFNVEKVQYK-NVIFTVWDVGGQEKLR----------PL 77 (193)
Q Consensus 13 ~~~~~~~v~v~G~~~~GKssli~~l~~~~~~~~~----~t~~~~~~~~~~~-~~~~~i~D~~g~~~~~----------~~ 77 (193)
++...-.|+++|.+|||||||+|+|++..+.... .|........... ..++.+|||||+.... ..
T Consensus 6 ~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~ 85 (308)
T 3iev_A 6 HHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEI 85 (308)
T ss_dssp -CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHH
Confidence 4456779999999999999999999998875332 2333334455666 8999999999986544 56
Q ss_pred HHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCC-CCCCHhHHHhhhCCCcCCCCceEEE
Q 029446 78 WRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMK-GAMTPMEVCEGLGLFDLKNRKWHIQ 156 (193)
Q Consensus 78 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (193)
...+++.+|++++|+|+++..+......|+..+.. .+.|+++|+||+|+. +.....+..+.+... .....+++
T Consensus 86 ~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~----~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~--~~~~~~i~ 159 (308)
T 3iev_A 86 AKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP----LNKPVIVVINKIDKIGPAKNVLPLIDEIHKK--HPELTEIV 159 (308)
T ss_dssp HHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG----GCCCEEEEEECGGGSSSGGGGHHHHHHHHHH--CTTCCCEE
T ss_pred HHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh----cCCCEEEEEECccCCCCHHHHHHHHHHHHHh--ccCCCeEE
Confidence 67788999999999999998888777665666543 468999999999997 433333322222110 01224799
Q ss_pred EeccccCCCHHHHHHHHHHHHHh
Q 029446 157 GTCALKGDGLYEGLDWLASTLKE 179 (193)
Q Consensus 157 ~~Sa~~~~gi~~~~~~l~~~~~~ 179 (193)
++||++|.|++++++.|.+.+.+
T Consensus 160 ~vSA~~g~gv~~L~~~l~~~l~~ 182 (308)
T 3iev_A 160 PISALKGANLDELVKTILKYLPE 182 (308)
T ss_dssp ECBTTTTBSHHHHHHHHHHHSCB
T ss_pred EEeCCCCCCHHHHHHHHHHhCcc
Confidence 99999999999999999998854
No 120
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.93 E-value=8.1e-26 Score=166.43 Aligned_cols=144 Identities=19% Similarity=0.173 Sum_probs=109.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcc-cccc--ccceeEEEEEEcCEEEEEEecCCCCCCHH----------hHHhhh--
Q 029446 18 MRVVMLGLDAAGKTTILYKLHIGEVL-STVP--TIGFNVEKVQYKNVIFTVWDVGGQEKLRP----------LWRHYF-- 82 (193)
Q Consensus 18 ~~v~v~G~~~~GKssli~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~~~i~D~~g~~~~~~----------~~~~~~-- 82 (193)
.+|+++|++|+|||||+|+|++.... ...| |.......+...+..+.+|||||...+.. ....++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~ 81 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVID 81 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHHhh
Confidence 48999999999999999999988654 2333 33344556777888999999999877653 456666
Q ss_pred cCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC----CHhHHHhhhCCCcCCCCceEEEEe
Q 029446 83 NNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM----TPMEVCEGLGLFDLKNRKWHIQGT 158 (193)
Q Consensus 83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 158 (193)
+++|++++|+|+++.++...+..+ +.. .+.|+++|+||+|+.+.. ...++.+.++ ++++++
T Consensus 82 ~~~d~vi~VvDas~~~~~~~l~~~---l~~----~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~lg--------~~vi~~ 146 (256)
T 3iby_A 82 LEYDCIINVIDACHLERHLYLTSQ---LFE----LGKPVVVALNMMDIAEHRGISIDTEKLESLLG--------CSVIPI 146 (256)
T ss_dssp SCCSEEEEEEEGGGHHHHHHHHHH---HTT----SCSCEEEEEECHHHHHHTTCEECHHHHHHHHC--------SCEEEC
T ss_pred CCCCEEEEEeeCCCchhHHHHHHH---HHH----cCCCEEEEEEChhcCCcCCcHHHHHHHHHHcC--------CCEEEE
Confidence 889999999999986655444333 222 378999999999986532 2344555554 479999
Q ss_pred ccccCCCHHHHHHHHHHH
Q 029446 159 CALKGDGLYEGLDWLAST 176 (193)
Q Consensus 159 Sa~~~~gi~~~~~~l~~~ 176 (193)
||++|.|+++++++|.+.
T Consensus 147 SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 147 QAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp BGGGTBSHHHHHHHHHTC
T ss_pred ECCCCCCHHHHHHHHHhh
Confidence 999999999999999876
No 121
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.93 E-value=2.3e-26 Score=166.06 Aligned_cols=166 Identities=17% Similarity=0.121 Sum_probs=111.2
Q ss_pred hhcCCCccEEEEEcCCCCCHHHHHHHHhcCCc-ccc----ccccceeEEEEE-EcCEEEEEEecCCCC----------CC
Q 029446 11 VFFGNSEMRVVMLGLDAAGKTTILYKLHIGEV-LST----VPTIGFNVEKVQ-YKNVIFTVWDVGGQE----------KL 74 (193)
Q Consensus 11 ~~~~~~~~~v~v~G~~~~GKssli~~l~~~~~-~~~----~~t~~~~~~~~~-~~~~~~~i~D~~g~~----------~~ 74 (193)
..+....++|+++|.+|+|||||+|+|++... ... ..|....+..+. .....+.+|||||.. .+
T Consensus 23 ~~~~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~ 102 (223)
T 4dhe_A 23 DLPPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHW 102 (223)
T ss_dssp GSCCCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHH
T ss_pred hCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHH
Confidence 34556789999999999999999999999873 222 223333344443 346889999999943 33
Q ss_pred HHhHHhhhcC---CCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHH----HhhhCCC-
Q 029446 75 RPLWRHYFNN---TDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEV----CEGLGLF- 146 (193)
Q Consensus 75 ~~~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~----~~~~~~~- 146 (193)
......+++. +|++++|+|+++..+.. ...++..+ .. .+.|+++|+||+|+.+.....+. .+.+...
T Consensus 103 ~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~-~~~~~~~l-~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~ 177 (223)
T 4dhe_A 103 EQLLSSYLQTRPQLCGMILMMDARRPLTEL-DRRMIEWF-AP---TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYR 177 (223)
T ss_dssp HHHHHHHHHHCTTEEEEEEEEETTSCCCHH-HHHHHHHH-GG---GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcCcCEEEEEEeCCCCCCHH-HHHHHHHH-Hh---cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhh
Confidence 5555566665 77899999998754322 22333333 32 46899999999999875332211 1222100
Q ss_pred -cCCCCceEEEEeccccCCCHHHHHHHHHHHHHhhh
Q 029446 147 -DLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEMR 181 (193)
Q Consensus 147 -~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~ 181 (193)
.......+++++||++|.|+++++++|.+.+....
T Consensus 178 ~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~~ 213 (223)
T 4dhe_A 178 DAGYAGKLTVQLFSALKRTGLDDAHALIESWLRPAA 213 (223)
T ss_dssp HHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC---
T ss_pred hcccCCCCeEEEeecCCCcCHHHHHHHHHHhcCccC
Confidence 00135668999999999999999999999886554
No 122
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.93 E-value=2.7e-25 Score=164.82 Aligned_cols=147 Identities=21% Similarity=0.226 Sum_probs=108.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCcc-cccc--ccceeEEEEEEcCEEEEEEecCCCCCCH------HhHHhhhc--C
Q 029446 16 SEMRVVMLGLDAAGKTTILYKLHIGEVL-STVP--TIGFNVEKVQYKNVIFTVWDVGGQEKLR------PLWRHYFN--N 84 (193)
Q Consensus 16 ~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~~~i~D~~g~~~~~------~~~~~~~~--~ 84 (193)
..++|+++|++|+|||||+|+|++.... ...| |.......+.. +..+.+|||||+..+. .....++. +
T Consensus 2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~ 80 (272)
T 3b1v_A 2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQR 80 (272)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTC
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcCC
Confidence 4689999999999999999999987532 3333 33333333433 6789999999998875 45566665 6
Q ss_pred CCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC----CCHhHHHhhhCCCcCCCCceEEEEecc
Q 029446 85 TDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA----MTPMEVCEGLGLFDLKNRKWHIQGTCA 160 (193)
Q Consensus 85 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (193)
+|++++|+|+++.++. ..|...+.. .+.|+++|+||+|+... ....++.+.++ ++++++||
T Consensus 81 ~d~vi~V~D~t~~e~~---~~~~~~l~~----~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg--------~~vi~~SA 145 (272)
T 3b1v_A 81 ADSILNVVDATNLERN---LYLTTQLIE----TGIPVTIALNMIDVLDGQGKKINVDKLSYHLG--------VPVVATSA 145 (272)
T ss_dssp CSEEEEEEEGGGHHHH---HHHHHHHHH----TCSCEEEEEECHHHHHHTTCCCCHHHHHHHHT--------SCEEECBT
T ss_pred CCEEEEEecCCchHhH---HHHHHHHHh----cCCCEEEEEEChhhCCcCCcHHHHHHHHHHcC--------CCEEEEEc
Confidence 9999999999876544 344445443 47899999999998542 23344555554 47999999
Q ss_pred ccCCCHHHHHHHHHHHHH
Q 029446 161 LKGDGLYEGLDWLASTLK 178 (193)
Q Consensus 161 ~~~~gi~~~~~~l~~~~~ 178 (193)
++|+|++++++++.+.+.
T Consensus 146 ~~g~gi~el~~~i~~~~~ 163 (272)
T 3b1v_A 146 LKQTGVDQVVKKAAHTTT 163 (272)
T ss_dssp TTTBSHHHHHHHHHHSCT
T ss_pred cCCCCHHHHHHHHHHHHh
Confidence 999999999999988653
No 123
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.93 E-value=1.8e-25 Score=166.26 Aligned_cols=149 Identities=19% Similarity=0.180 Sum_probs=111.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCcc-cccc--ccceeEEEEEEcCEEEEEEecCCCCCCH----------HhHHhhh
Q 029446 16 SEMRVVMLGLDAAGKTTILYKLHIGEVL-STVP--TIGFNVEKVQYKNVIFTVWDVGGQEKLR----------PLWRHYF 82 (193)
Q Consensus 16 ~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~~~i~D~~g~~~~~----------~~~~~~~ 82 (193)
+.++|+++|++|+|||||+|+|++..+. ...+ |.......+...+..+.+|||||+..+. .....++
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~ 81 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI 81 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHHH
Confidence 4689999999999999999999998754 2233 3344445566677899999999988765 2233333
Q ss_pred --cCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC----CHhHHHhhhCCCcCCCCceEEE
Q 029446 83 --NNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM----TPMEVCEGLGLFDLKNRKWHIQ 156 (193)
Q Consensus 83 --~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~----~~~~~~~~~~~~~~~~~~~~~~ 156 (193)
+++|++++|+|+++.++...+..++.+. +.|+++|+||+|+.+.. ..+++.+.++ ++++
T Consensus 82 ~~~~~d~ii~VvD~~~~~~~~~~~~~l~~~-------~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~lg--------~~~i 146 (274)
T 3i8s_A 82 LSGDADLLINVVDASNLERNLYLTLQLLEL-------GIPCIVALNMLDIAEKQNIRIEIDALSARLG--------CPVI 146 (274)
T ss_dssp HHTCCSEEEEEEEGGGHHHHHHHHHHHHHH-------TCCEEEEEECHHHHHHTTEEECHHHHHHHHT--------SCEE
T ss_pred hhcCCCEEEEEecCCChHHHHHHHHHHHhc-------CCCEEEEEECccchhhhhHHHHHHHHHHhcC--------CCEE
Confidence 6899999999999866555544444432 68999999999986532 2344545444 4799
Q ss_pred EeccccCCCHHHHHHHHHHHHHh
Q 029446 157 GTCALKGDGLYEGLDWLASTLKE 179 (193)
Q Consensus 157 ~~Sa~~~~gi~~~~~~l~~~~~~ 179 (193)
++||++|.|+++++++|.+.+..
T Consensus 147 ~~SA~~g~gi~el~~~i~~~~~~ 169 (274)
T 3i8s_A 147 PLVSTRGRGIEALKLAIDRYKAN 169 (274)
T ss_dssp ECCCGGGHHHHHHHHHHHTCCCC
T ss_pred EEEcCCCCCHHHHHHHHHHHHhc
Confidence 99999999999999999887653
No 124
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.93 E-value=1.3e-25 Score=177.06 Aligned_cols=161 Identities=14% Similarity=0.065 Sum_probs=115.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCcc--cc--ccccceeEEEEEEcCEEEEEEecCCC----------CCCHHhHH-h
Q 029446 16 SEMRVVMLGLDAAGKTTILYKLHIGEVL--ST--VPTIGFNVEKVQYKNVIFTVWDVGGQ----------EKLRPLWR-H 80 (193)
Q Consensus 16 ~~~~v~v~G~~~~GKssli~~l~~~~~~--~~--~~t~~~~~~~~~~~~~~~~i~D~~g~----------~~~~~~~~-~ 80 (193)
..++|+++|.+|+|||||+|++++.... .. +.|.+.....+..++..+.+|||||+ +.|...+. .
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~ 253 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALK 253 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHHH
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHHHH
Confidence 5689999999999999999999988764 22 22333334456677888999999997 44444433 4
Q ss_pred hhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcCCCCceEEEEe
Q 029446 81 YFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT--PMEVCEGLGLFDLKNRKWHIQGT 158 (193)
Q Consensus 81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 158 (193)
+++.+|++++|+|++++.+++.. .|+..+.. .+.|+|+|+||+|+.+... .++..+.+........+.+++++
T Consensus 254 ~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 328 (436)
T 2hjg_A 254 AIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE----AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFM 328 (436)
T ss_dssp HHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH----TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEEC
T ss_pred HHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH----cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEEE
Confidence 77899999999999998887775 45555443 5799999999999987543 22333222211112235689999
Q ss_pred ccccCCCHHHHHHHHHHHHHhhh
Q 029446 159 CALKGDGLYEGLDWLASTLKEMR 181 (193)
Q Consensus 159 Sa~~~~gi~~~~~~l~~~~~~~~ 181 (193)
||++|.|++++++.+.+.+....
T Consensus 329 SA~tg~~v~~l~~~i~~~~~~~~ 351 (436)
T 2hjg_A 329 SALTKKRIHTLMPAIIKASENHS 351 (436)
T ss_dssp CTTTCTTGGGHHHHHHHHHHHHT
T ss_pred ecccCCCHHHHHHHHHHHHHHhh
Confidence 99999999999999998876543
No 125
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.93 E-value=4.4e-25 Score=165.98 Aligned_cols=156 Identities=18% Similarity=0.073 Sum_probs=113.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCcccc---c-cccceeEEEEEEcCEEEEEEecCCCCC--------CHHhHHhhh
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHIGEVLST---V-PTIGFNVEKVQYKNVIFTVWDVGGQEK--------LRPLWRHYF 82 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~~~---~-~t~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~~ 82 (193)
.+..+|+++|.+|+|||||+|+|++..+... . .|.......+.....++.+|||||... +......++
T Consensus 5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l 84 (301)
T 1wf3_A 5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEAL 84 (301)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHHHH
Confidence 3556899999999999999999999877532 1 222222334556789999999999876 455667788
Q ss_pred cCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCcCCCCceEEEEeccc
Q 029446 83 NNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT-PMEVCEGLGLFDLKNRKWHIQGTCAL 161 (193)
Q Consensus 83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (193)
+++|++++|+|++++.+.. ..|+...+.... .+.|+|+|+||+|+.+... ..+..+.+ ....+++++||+
T Consensus 85 ~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~~-~~~p~ilV~NK~Dl~~~~~~~~~~~~~~------~~~~~~~~iSA~ 155 (301)
T 1wf3_A 85 ADVNAVVWVVDLRHPPTPE--DELVARALKPLV-GKVPILLVGNKLDAAKYPEEAMKAYHEL------LPEAEPRMLSAL 155 (301)
T ss_dssp SSCSEEEEEEETTSCCCHH--HHHHHHHHGGGT-TTSCEEEEEECGGGCSSHHHHHHHHHHT------STTSEEEECCTT
T ss_pred hcCCEEEEEEECCCCCChH--HHHHHHHHHhhc-CCCCEEEEEECcccCCchHHHHHHHHHh------cCcCcEEEEeCC
Confidence 9999999999998765433 345544444321 4789999999999986533 22223332 112379999999
Q ss_pred cCCCHHHHHHHHHHHHHh
Q 029446 162 KGDGLYEGLDWLASTLKE 179 (193)
Q Consensus 162 ~~~gi~~~~~~l~~~~~~ 179 (193)
+|.|++++++.|.+.+.+
T Consensus 156 ~g~gv~~l~~~l~~~l~~ 173 (301)
T 1wf3_A 156 DERQVAELKADLLALMPE 173 (301)
T ss_dssp CHHHHHHHHHHHHTTCCB
T ss_pred CCCCHHHHHHHHHHhccc
Confidence 999999999999887643
No 126
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.93 E-value=4.1e-26 Score=184.12 Aligned_cols=158 Identities=23% Similarity=0.288 Sum_probs=111.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEEEEE------------EcCEEEEEEecCCCCCCHHhHHh
Q 029446 14 GNSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVEKVQ------------YKNVIFTVWDVGGQEKLRPLWRH 80 (193)
Q Consensus 14 ~~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~~~------------~~~~~~~i~D~~g~~~~~~~~~~ 80 (193)
....+||+++|.+|||||||+++++++.+. .+.+|.+.++.... .....+.+||+||++.+...+..
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~ 117 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQF 117 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHH
T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHH
Confidence 457799999999999999999999998876 45688887776442 12689999999999999999999
Q ss_pred hhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcCCCCceEEEEe
Q 029446 81 YFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT--PMEVCEGLGLFDLKNRKWHIQGT 158 (193)
Q Consensus 81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 158 (193)
+++++|++++|+|+++.+. ...|+..+.... .+.|+|+|+||+|+.+... .++..+.. ...+.+++++
T Consensus 118 ~l~~~d~ii~V~D~s~~~~---~~~~~~~l~~~~--~~~pvilV~NK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~v 187 (535)
T 3dpu_A 118 FMTRSSVYMLLLDSRTDSN---KHYWLRHIEKYG--GKSPVIVVMNKIDENPSYNIEQKKINERF-----PAIENRFHRI 187 (535)
T ss_dssp HHHSSEEEEEEECGGGGGG---HHHHHHHHHHHS--SSCCEEEEECCTTTCTTCCCCHHHHHHHC-----GGGTTCEEEC
T ss_pred HccCCcEEEEEEeCCCchh---HHHHHHHHHHhC--CCCCEEEEEECCCcccccccCHHHHHHHH-----HhcCCceEEE
Confidence 9999999999999987644 445555554432 4689999999999976433 22333222 2334579999
Q ss_pred ccccCCCHHHHHHHHHHHHHhhh
Q 029446 159 CALKGDGLYEGLDWLASTLKEMR 181 (193)
Q Consensus 159 Sa~~~~gi~~~~~~l~~~~~~~~ 181 (193)
||++|.|++++++.|.+.+.+..
T Consensus 188 SA~~g~gi~eL~~~l~~~~~~~~ 210 (535)
T 3dpu_A 188 SCKNGDGVESIAKSLKSAVLHPD 210 (535)
T ss_dssp CC-----CTTHHHHHHHHHTCTT
T ss_pred ecCcccCHHHHHHHHHHHHhccc
Confidence 99999999999999999886543
No 127
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.92 E-value=2.4e-24 Score=160.08 Aligned_cols=152 Identities=22% Similarity=0.199 Sum_probs=115.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccc--eeEEEEEEcCEEEEEEecCCCCCCHH------hHHhhh--cC
Q 029446 16 SEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIG--FNVEKVQYKNVIFTVWDVGGQEKLRP------LWRHYF--NN 84 (193)
Q Consensus 16 ~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~--~~~~~~~~~~~~~~i~D~~g~~~~~~------~~~~~~--~~ 84 (193)
+.++|+++|++|||||||+|+|++..+. ...++.+ .....+.+.+..+.+|||||+..+.. ....++ .+
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 81 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSIDELIARNFILDGN 81 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTC
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHHHHHHHHhhhccC
Confidence 4689999999999999999999988764 2334333 44455667888999999999887765 555666 68
Q ss_pred CCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC----CCHhHHHhhhCCCcCCCCceEEEEecc
Q 029446 85 TDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA----MTPMEVCEGLGLFDLKNRKWHIQGTCA 160 (193)
Q Consensus 85 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (193)
+|++++|+|+++.. ....++..+... ...|+++|+||+|+.+. .....+.+.++ ++++++||
T Consensus 82 ~d~vi~v~D~~~~~---~~~~~~~~~~~~---~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg--------~~~~~~Sa 147 (271)
T 3k53_A 82 ADVIVDIVDSTCLM---RNLFLTLELFEM---EVKNIILVLNKFDLLKKKGAKIDIKKMRKELG--------VPVIPTNA 147 (271)
T ss_dssp CSEEEEEEEGGGHH---HHHHHHHHHHHT---TCCSEEEEEECHHHHHHHTCCCCHHHHHHHHS--------SCEEECBG
T ss_pred CcEEEEEecCCcch---hhHHHHHHHHhc---CCCCEEEEEEChhcCcccccHHHHHHHHHHcC--------CcEEEEEe
Confidence 99999999998753 334455555443 23899999999997542 23455555554 37999999
Q ss_pred ccCCCHHHHHHHHHHHHHhhh
Q 029446 161 LKGDGLYEGLDWLASTLKEMR 181 (193)
Q Consensus 161 ~~~~gi~~~~~~l~~~~~~~~ 181 (193)
++|.|++++++.+.+.+....
T Consensus 148 ~~g~gi~~l~~~i~~~~~~~~ 168 (271)
T 3k53_A 148 KKGEGVEELKRMIALMAEGKV 168 (271)
T ss_dssp GGTBTHHHHHHHHHHHHHTCC
T ss_pred CCCCCHHHHHHHHHHHHhccc
Confidence 999999999999999876543
No 128
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.92 E-value=7e-26 Score=179.54 Aligned_cols=169 Identities=21% Similarity=0.262 Sum_probs=113.0
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhcCCcccccccccee----EEEEEEcCEEEEEEecCC--------CCCCHHhHHh
Q 029446 13 FGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFN----VEKVQYKNVIFTVWDVGG--------QEKLRPLWRH 80 (193)
Q Consensus 13 ~~~~~~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~----~~~~~~~~~~~~i~D~~g--------~~~~~~~~~~ 80 (193)
.....++|+++|.+|+|||||+|+|.+..+.....+.|.+ +..+.+.+..+.+||||| +++++.....
T Consensus 19 ~~m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~ 98 (456)
T 4dcu_A 19 SHMGKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEI 98 (456)
T ss_dssp ----CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHH
T ss_pred hhcCCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHh
Confidence 3345689999999999999999999998765443444444 344445678999999999 6667778888
Q ss_pred hhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEecc
Q 029446 81 YFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCA 160 (193)
Q Consensus 81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (193)
+++++|++++|+|+.+. +.....++..++.. .++|+++|+||+|+.+... ...+.+. ...+ .++++||
T Consensus 99 ~~~~ad~il~VvD~~~~--~~~~d~~l~~~l~~---~~~pvilV~NK~D~~~~~~--~~~e~~~----lg~~-~~~~iSA 166 (456)
T 4dcu_A 99 AMDEADVIIFMVNGREG--VTAADEEVAKILYR---TKKPVVLAVNKLDNTEMRA--NIYDFYS----LGFG-EPYPISG 166 (456)
T ss_dssp HHHHCSEEEEEEESSSC--SCHHHHHHHHHHTT---CCSCEEEEEECC-----------CCSGG----GSSS-SEEECCT
T ss_pred hHhhCCEEEEEEeCCCC--CChHHHHHHHHHHH---cCCCEEEEEECccchhhhh--hHHHHHH----cCCC-ceEEeec
Confidence 89999999999998654 33444566666654 5799999999999875321 1111111 1111 3579999
Q ss_pred ccCCCHHHHHHHHHHHHHhhhc------------cCCCCCCcCCC
Q 029446 161 LKGDGLYEGLDWLASTLKEMRA------------AGYSSVGTSSF 193 (193)
Q Consensus 161 ~~~~gi~~~~~~l~~~~~~~~~------------~~~~~~~~~~~ 193 (193)
++|.|+.++++.+.+.+..... -|.+++|||||
T Consensus 167 ~~g~gv~~L~~~i~~~l~~~~~~~~~~~~~ki~ivG~~~vGKSsl 211 (456)
T 4dcu_A 167 THGLGLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSL 211 (456)
T ss_dssp TTCTTHHHHHHHHHTTGGGSCSSCCCTTCEEEEEECSTTSSHHHH
T ss_pred ccccchHHHHHHHHhhcccccccccccccceeEEecCCCCCHHHH
Confidence 9999999999999988753321 27788888864
No 129
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.91 E-value=2.4e-26 Score=165.47 Aligned_cols=121 Identities=24% Similarity=0.299 Sum_probs=96.8
Q ss_pred hcCCCccEEEEEcCCCCCHHHHHHHHhcCCccc----cccccceeEEEEEEcCEEEEEEecCCCCCCHHhHHhhhcC---
Q 029446 12 FFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLS----TVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNN--- 84 (193)
Q Consensus 12 ~~~~~~~~v~v~G~~~~GKssli~~l~~~~~~~----~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~--- 84 (193)
....+.++|+++|++|+|||||+++|.+..+.. +.++.+..+ ....+.+||+||++.++..+..+++.
T Consensus 7 ~~~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 81 (218)
T 1nrj_B 7 KQKSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY-----DGSGVTLVDFPGHVKLRYKLSDYLKTRAK 81 (218)
T ss_dssp ---CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG-----GGSSCEEEECCCCGGGTHHHHHHHHHHGG
T ss_pred CccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe-----eCceEEEEECCCcHHHHHHHHHHHHhccc
Confidence 345678999999999999999999999987653 233333222 56789999999999999888888887
Q ss_pred -CCEEEEEEECC-ChhhHHHHHHHHHHHHcCC---CCCCCeEEEEEeCCCCCCCCCHh
Q 029446 85 -TDGLIYVVDSL-DRERIGKAKQEFQAIIKDP---FMLNSVILVFANKQDMKGAMTPM 137 (193)
Q Consensus 85 -~d~~i~v~d~~-~~~s~~~~~~~~~~~~~~~---~~~~~p~ivv~nK~Dl~~~~~~~ 137 (193)
+|++++|+|++ ++.++.....|+..+.... ...+.|+++|+||+|+.+.....
T Consensus 82 ~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~ 139 (218)
T 1nrj_B 82 FVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPS 139 (218)
T ss_dssp GEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHH
T ss_pred cCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHH
Confidence 89999999999 8889999999888887532 22579999999999998875543
No 130
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.91 E-value=1.6e-24 Score=165.11 Aligned_cols=158 Identities=21% Similarity=0.193 Sum_probs=119.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcc--cc-ccccceeEEEEEEcC-EEEEEEecCCC----CCCHHhHHhhh---cCCC
Q 029446 18 MRVVMLGLDAAGKTTILYKLHIGEVL--ST-VPTIGFNVEKVQYKN-VIFTVWDVGGQ----EKLRPLWRHYF---NNTD 86 (193)
Q Consensus 18 ~~v~v~G~~~~GKssli~~l~~~~~~--~~-~~t~~~~~~~~~~~~-~~~~i~D~~g~----~~~~~~~~~~~---~~~d 86 (193)
.+|+++|.+|||||||+|++++.... .+ .+|...+...+.... .++.+||+||. ..+..+...++ +.++
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d 238 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTR 238 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCC
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHHHHhcc
Confidence 47899999999999999999987643 33 356667777777764 89999999994 33444444444 4599
Q ss_pred EEEEEEECCC---hhhHHHHHHHHHHHHcCC-CCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCcCCCCceEEEEeccc
Q 029446 87 GLIYVVDSLD---RERIGKAKQEFQAIIKDP-FMLNSVILVFANKQDMKGAMT-PMEVCEGLGLFDLKNRKWHIQGTCAL 161 (193)
Q Consensus 87 ~~i~v~d~~~---~~s~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (193)
++++|+|+++ +.+++.+..|+.++.... ...++|+++|+||+|+....+ .+++.+.+.. ..+++++||+
T Consensus 239 ~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~e~~~~l~~~l~~------~~~v~~iSA~ 312 (342)
T 1lnz_A 239 VIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEKLTD------DYPVFPISAV 312 (342)
T ss_dssp EEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHHHHHHHHCCS------CCCBCCCSSC
T ss_pred EEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCHHHHHHHHHHhhc------CCCEEEEECC
Confidence 9999999998 788888888888776542 235799999999999876421 2233333321 1479999999
Q ss_pred cCCCHHHHHHHHHHHHHhhh
Q 029446 162 KGDGLYEGLDWLASTLKEMR 181 (193)
Q Consensus 162 ~~~gi~~~~~~l~~~~~~~~ 181 (193)
+++|+++++++|.+.+.+..
T Consensus 313 tg~gi~eL~~~l~~~l~~~~ 332 (342)
T 1lnz_A 313 TREGLRELLFEVANQLENTP 332 (342)
T ss_dssp CSSTTHHHHHHHHHHHTSCC
T ss_pred CCcCHHHHHHHHHHHHhhCc
Confidence 99999999999999986544
No 131
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.91 E-value=1.3e-23 Score=161.68 Aligned_cols=159 Identities=19% Similarity=0.175 Sum_probs=119.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc---cccccceeEEEEEEcCEEEEEEecCCCCCCH---------HhHHhhh
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHIGEVLS---TVPTIGFNVEKVQYKNVIFTVWDVGGQEKLR---------PLWRHYF 82 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~~---~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~---------~~~~~~~ 82 (193)
...++|+++|.+|+|||||+|++.+..... ...|.+.....+......+.+|||||..... .......
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 244 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILALR 244 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHHGGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHHHHHHHH
Confidence 467899999999999999999999887531 2345566666666678899999999975431 1223444
Q ss_pred cCCCEEEEEEECCChh--hHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEecc
Q 029446 83 NNTDGLIYVVDSLDRE--RIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCA 160 (193)
Q Consensus 83 ~~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (193)
..+|++++|+|++++. +++....|+..+.... .+.|+|+|+||+|+......++..... +..+++++++||
T Consensus 245 ~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~--~~~piilV~NK~Dl~~~~~~~~~~~~~-----~~~~~~~~~iSA 317 (357)
T 2e87_A 245 YLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEF--KDLPFLVVINKIDVADEENIKRLEKFV-----KEKGLNPIKISA 317 (357)
T ss_dssp GTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHT--TTSCEEEEECCTTTCCHHHHHHHHHHH-----HHTTCCCEECBT
T ss_pred hcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhc--CCCCEEEEEECcccCChHHHHHHHHHH-----HhcCCCeEEEeC
Confidence 5799999999998877 6788778887776532 278999999999987653222222211 123457999999
Q ss_pred ccCCCHHHHHHHHHHHHHhh
Q 029446 161 LKGDGLYEGLDWLASTLKEM 180 (193)
Q Consensus 161 ~~~~gi~~~~~~l~~~~~~~ 180 (193)
++|+|+++++++|.+.+...
T Consensus 318 ~~g~gi~~l~~~i~~~l~~~ 337 (357)
T 2e87_A 318 LKGTGIDLVKEEIIKTLRPL 337 (357)
T ss_dssp TTTBTHHHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHHH
Confidence 99999999999999988654
No 132
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.91 E-value=4.5e-24 Score=169.14 Aligned_cols=149 Identities=22% Similarity=0.234 Sum_probs=97.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCcc--cc--ccccceeEEEEEEcCEEEEEEecCCCCCCHHhH--------Hhhhc
Q 029446 16 SEMRVVMLGLDAAGKTTILYKLHIGEVL--ST--VPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLW--------RHYFN 83 (193)
Q Consensus 16 ~~~~v~v~G~~~~GKssli~~l~~~~~~--~~--~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~--------~~~~~ 83 (193)
..++|+++|.+|+|||||+|+|.+.... .. ..|.......+..++..+.+|||||+.++...+ ..+++
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~~~ 311 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMKMA 311 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETTEEEEEEC--------------------CCCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchhHHHHHHHHHHHhhcc
Confidence 4689999999999999999999987633 22 233444456677789999999999987765432 44678
Q ss_pred CCCEEEEEEECCChhhHHH---HHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhH--HHhhhCCCcCCCCceEEEEe
Q 029446 84 NTDGLIYVVDSLDRERIGK---AKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPME--VCEGLGLFDLKNRKWHIQGT 158 (193)
Q Consensus 84 ~~d~~i~v~d~~~~~s~~~---~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 158 (193)
++|++++|+|++++.+++. ...++..+ .+.|+|+|+||+|+.+...... +.+. . ..+++++
T Consensus 312 ~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l------~~~piIvV~NK~Dl~~~~~~~~~~l~~~-~-------~~~~i~v 377 (476)
T 3gee_A 312 EADLILYLLDLGTERLDDELTEIRELKAAH------PAAKFLTVANKLDRAANADALIRAIADG-T-------GTEVIGI 377 (476)
T ss_dssp SCSEEEEEEETTTCSSGGGHHHHHHHHHHC------TTSEEEEEEECTTSCTTTHHHHHHHHHH-H-------TSCEEEC
T ss_pred cCCEEEEEEECCCCcchhhhHHHHHHHHhc------CCCCEEEEEECcCCCCccchhHHHHHhc-C-------CCceEEE
Confidence 9999999999998877653 22333332 2789999999999987643321 2221 0 1369999
Q ss_pred ccccCCCHHHHHHHHHHHHH
Q 029446 159 CALKGDGLYEGLDWLASTLK 178 (193)
Q Consensus 159 Sa~~~~gi~~~~~~l~~~~~ 178 (193)
||++|+|+++++++|.+.+.
T Consensus 378 SAktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 378 SALNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp BTTTTBSHHHHHHHHTHHHH
T ss_pred EECCCCCHHHHHHHHHHHHh
Confidence 99999999999999999886
No 133
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.91 E-value=3.3e-24 Score=167.49 Aligned_cols=162 Identities=16% Similarity=0.053 Sum_probs=115.0
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhcCCcccc----ccccce----------e---------EEEEEEcCEEEEEEecC
Q 029446 13 FGNSEMRVVMLGLDAAGKTTILYKLHIGEVLST----VPTIGF----------N---------VEKVQYKNVIFTVWDVG 69 (193)
Q Consensus 13 ~~~~~~~v~v~G~~~~GKssli~~l~~~~~~~~----~~t~~~----------~---------~~~~~~~~~~~~i~D~~ 69 (193)
.....++|+++|++++|||||+++|++...... ..+.+. . ..........+.+||||
T Consensus 4 ~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtP 83 (403)
T 3sjy_A 4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAP 83 (403)
T ss_dssp CCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECC
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECC
Confidence 346789999999999999999999998543211 011000 0 00001122789999999
Q ss_pred CCCCCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhH----HHhhhCC
Q 029446 70 GQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPME----VCEGLGL 145 (193)
Q Consensus 70 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~----~~~~~~~ 145 (193)
|+++|......++..+|++++|+|+++..++.....++..+... ...|+|+|+||+|+.+.....+ +.+.+..
T Consensus 84 Gh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~---~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~ 160 (403)
T 3sjy_A 84 GHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII---GVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKG 160 (403)
T ss_dssp CCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc---CCCCEEEEEECccccchHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999876555555555544332 2358999999999987532222 2222221
Q ss_pred CcCCCCceEEEEeccccCCCHHHHHHHHHHHHHh
Q 029446 146 FDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKE 179 (193)
Q Consensus 146 ~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~ 179 (193)
....+++++++||++|+|+++++++|.+.+..
T Consensus 161 --~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~ 192 (403)
T 3sjy_A 161 --TWAENVPIIPVSALHKINIDSLIEGIEEYIKT 192 (403)
T ss_dssp --STTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred --hCCCCCEEEEEECCCCcChHHHHHHHHHhCCC
Confidence 12235689999999999999999999987754
No 134
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.91 E-value=4.9e-24 Score=169.07 Aligned_cols=150 Identities=23% Similarity=0.300 Sum_probs=114.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCcc---cc-ccccceeEEEEEEcCEEEEEEecCCCC-CCH--------HhHHhhhc
Q 029446 17 EMRVVMLGLDAAGKTTILYKLHIGEVL---ST-VPTIGFNVEKVQYKNVIFTVWDVGGQE-KLR--------PLWRHYFN 83 (193)
Q Consensus 17 ~~~v~v~G~~~~GKssli~~l~~~~~~---~~-~~t~~~~~~~~~~~~~~~~i~D~~g~~-~~~--------~~~~~~~~ 83 (193)
.++|+++|.+|+|||||+|+|++.... .+ ..|.......+..++..+.+|||||.. ++. .....+++
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~ 322 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIE 322 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHH
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHHHhh
Confidence 489999999999999999999987642 22 345555566777889999999999987 543 23456778
Q ss_pred CCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccC
Q 029446 84 NTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKG 163 (193)
Q Consensus 84 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (193)
.+|++++|+|++++.+++.. ..+.. + .++|+|+|+||+|+.+....+++.+... .+.+++++||++|
T Consensus 323 ~aD~vl~VvD~s~~~s~~~~-~il~~-l-----~~~piivV~NK~DL~~~~~~~~~~~~~~------~~~~~i~iSAktg 389 (482)
T 1xzp_A 323 KADIVLFVLDASSPLDEEDR-KILER-I-----KNKRYLVVINKVDVVEKINEEEIKNKLG------TDRHMVKISALKG 389 (482)
T ss_dssp HCSEEEEEEETTSCCCHHHH-HHHHH-H-----TTSSEEEEEEECSSCCCCCHHHHHHHHT------CSTTEEEEEGGGT
T ss_pred cccEEEEEecCCCCCCHHHH-HHHHH-h-----cCCCEEEEEECcccccccCHHHHHHHhc------CCCcEEEEECCCC
Confidence 99999999999988777653 23332 2 3689999999999976544444443322 2246999999999
Q ss_pred CCHHHHHHHHHHHHHh
Q 029446 164 DGLYEGLDWLASTLKE 179 (193)
Q Consensus 164 ~gi~~~~~~l~~~~~~ 179 (193)
+|+++++++|.+.+..
T Consensus 390 ~Gi~eL~~~l~~~~~~ 405 (482)
T 1xzp_A 390 EGLEKLEESIYRETQE 405 (482)
T ss_dssp CCHHHHHHHHHHHTHH
T ss_pred CCHHHHHHHHHHHHhh
Confidence 9999999999998764
No 135
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.91 E-value=3.1e-24 Score=170.09 Aligned_cols=162 Identities=15% Similarity=0.121 Sum_probs=113.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCcc--ccc--cccceeEEEEEEcCEEEEEEecCC----------CCCCHHhHH-
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHIGEVL--STV--PTIGFNVEKVQYKNVIFTVWDVGG----------QEKLRPLWR- 79 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~--~~~--~t~~~~~~~~~~~~~~~~i~D~~g----------~~~~~~~~~- 79 (193)
...++|+++|.+|+|||||+|++.+.... ... .|.......+...+..+.+||||| ++.+...+.
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~ 272 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRAL 272 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHH
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHHH
Confidence 45689999999999999999999977633 222 233333456667788999999999 677766654
Q ss_pred hhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcCCCCceEEEE
Q 029446 80 HYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT--PMEVCEGLGLFDLKNRKWHIQG 157 (193)
Q Consensus 80 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 157 (193)
.+++.+|++++|+|+++..+ +...++...+.. .++|+|+|+||+|+.+... .++..+...........+++++
T Consensus 273 ~~~~~ad~~llviD~~~~~~--~~~~~~~~~~~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (456)
T 4dcu_A 273 KAIDRSEVVAVVLDGEEGII--EQDKRIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILF 347 (456)
T ss_dssp HHHHHCSEEEEEEETTTCCC--HHHHHHHHHHHH---TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEEE
T ss_pred HHHhhCCEEEEEEeCCCCcC--HHHHHHHHHHHH---cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEEE
Confidence 47789999999999987543 333333333333 5799999999999986532 2232222211111122458999
Q ss_pred eccccCCCHHHHHHHHHHHHHhhh
Q 029446 158 TCALKGDGLYEGLDWLASTLKEMR 181 (193)
Q Consensus 158 ~Sa~~~~gi~~~~~~l~~~~~~~~ 181 (193)
+||++|+|++++++.+.+.+....
T Consensus 348 ~SA~~g~gv~~l~~~i~~~~~~~~ 371 (456)
T 4dcu_A 348 MSALTKKRIHTLMPAIIKASENHS 371 (456)
T ss_dssp CCTTTCTTGGGHHHHHHHHHHHHT
T ss_pred EcCCCCcCHHHHHHHHHHHHHHhc
Confidence 999999999999999998876554
No 136
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.91 E-value=1.9e-24 Score=168.78 Aligned_cols=157 Identities=18% Similarity=0.123 Sum_probs=111.7
Q ss_pred hcCCCccEEEEEcCCCCCHHHHHHHHhcCCccc----cccccceeEEEEEEcCE-EEEEEecCCCCCCHHh-------HH
Q 029446 12 FFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLS----TVPTIGFNVEKVQYKNV-IFTVWDVGGQEKLRPL-------WR 79 (193)
Q Consensus 12 ~~~~~~~~v~v~G~~~~GKssli~~l~~~~~~~----~~~t~~~~~~~~~~~~~-~~~i~D~~g~~~~~~~-------~~ 79 (193)
.+....++|+++|+.|+|||||+|+|++..+.. ...|.......+..... .+.+|||||+..+... ..
T Consensus 29 ~~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~~ 108 (423)
T 3qq5_A 29 PDAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKAR 108 (423)
T ss_dssp ---CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHHH
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHHH
Confidence 445678999999999999999999999887642 23445555666666554 8999999998876543 45
Q ss_pred hhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEec
Q 029446 80 HYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTC 159 (193)
Q Consensus 80 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (193)
.++.++|++++|+|++.... ...|+..+.. .+.|+|+|+||+|+...... +..+.+. +..+++++++|
T Consensus 109 ~~l~~aD~vllVvD~~~~~~---~~~~l~~l~~----~~~piIvV~NK~Dl~~~~~~-~~~~~l~----~~~g~~v~~vS 176 (423)
T 3qq5_A 109 RVFYRADCGILVTDSAPTPY---EDDVVNLFKE----MEIPFVVVVNKIDVLGEKAE-ELKGLYE----SRYEAKVLLVS 176 (423)
T ss_dssp HHHTSCSEEEEECSSSCCHH---HHHHHHHHHH----TTCCEEEECCCCTTTTCCCT-HHHHHSS----CCTTCCCCCCS
T ss_pred HHHhcCCEEEEEEeCCChHH---HHHHHHHHHh----cCCCEEEEEeCcCCCCccHH-HHHHHHH----HHcCCCEEEEE
Confidence 67889999999999943332 2344444433 37899999999999876544 3333332 34566899999
Q ss_pred cccCCCHHHHHHHHHHHHHhh
Q 029446 160 ALKGDGLYEGLDWLASTLKEM 180 (193)
Q Consensus 160 a~~~~gi~~~~~~l~~~~~~~ 180 (193)
|++|+|+++++++|.+.+.+.
T Consensus 177 Aktg~gI~eL~~~L~~~l~~~ 197 (423)
T 3qq5_A 177 ALQKKGFDDIGKTISEILPGD 197 (423)
T ss_dssp SCCTTSTTTHHHHHHHHSCCC
T ss_pred CCCCCCHHHHHHHHHHhhhhh
Confidence 999999999999999998544
No 137
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.91 E-value=1.4e-23 Score=160.51 Aligned_cols=135 Identities=23% Similarity=0.382 Sum_probs=108.7
Q ss_pred cccceeEEEEEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCC----------hhhHHHHHHHHHHHHcCCCC
Q 029446 47 PTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD----------RERIGKAKQEFQAIIKDPFM 116 (193)
Q Consensus 47 ~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~ 116 (193)
+|+|+....+..+.+.+.+||++|++.++..|..++++++++|+|+|+++ ..++.+...|+..+......
T Consensus 179 ~T~Gi~~~~~~~~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~ 258 (353)
T 1cip_A 179 KTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWF 258 (353)
T ss_dssp CCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGG
T ss_pred ceeceEEEEEeeCCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccc
Confidence 46677777788889999999999999999999999999999999999998 57899999999999876556
Q ss_pred CCCeEEEEEeCCCCCC-----------------CCCHhHHHhhh-----CCCcC-CCCceEEEEeccccCCCHHHHHHHH
Q 029446 117 LNSVILVFANKQDMKG-----------------AMTPMEVCEGL-----GLFDL-KNRKWHIQGTCALKGDGLYEGLDWL 173 (193)
Q Consensus 117 ~~~p~ivv~nK~Dl~~-----------------~~~~~~~~~~~-----~~~~~-~~~~~~~~~~Sa~~~~gi~~~~~~l 173 (193)
.+.|+|+++||+|+.. ....++..+.. .+... ...++.+++|||+++.||+++|+++
T Consensus 259 ~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v 338 (353)
T 1cip_A 259 TDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAV 338 (353)
T ss_dssp TTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred cCCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHH
Confidence 7899999999999852 12233332211 11111 2467889999999999999999999
Q ss_pred HHHHHhhh
Q 029446 174 ASTLKEMR 181 (193)
Q Consensus 174 ~~~~~~~~ 181 (193)
.+.+.+..
T Consensus 339 ~~~i~~~~ 346 (353)
T 1cip_A 339 TDVIIKNN 346 (353)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHH
Confidence 99887654
No 138
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.91 E-value=2.6e-23 Score=156.94 Aligned_cols=135 Identities=26% Similarity=0.405 Sum_probs=109.9
Q ss_pred cccceeEEEEEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECC----------ChhhHHHHHHHHHHHHcCCCC
Q 029446 47 PTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL----------DRERIGKAKQEFQAIIKDPFM 116 (193)
Q Consensus 47 ~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~~ 116 (193)
+|+|+....+..+.+.+++||++||++++..|..++++++++|+|+|++ +..++.+...|+..+......
T Consensus 153 ~TiGi~~~~~~~~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~ 232 (327)
T 3ohm_A 153 PTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWF 232 (327)
T ss_dssp CCCSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGG
T ss_pred ceeeEEEEEEEeeceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhcc
Confidence 5667778888889999999999999999999999999999999999664 678899999999999887666
Q ss_pred CCCeEEEEEeCCCCCCC------------------CCHhHHHhh-----hCCCcCCCCceEEEEeccccCCCHHHHHHHH
Q 029446 117 LNSVILVFANKQDMKGA------------------MTPMEVCEG-----LGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 173 (193)
Q Consensus 117 ~~~p~ivv~nK~Dl~~~------------------~~~~~~~~~-----~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l 173 (193)
.+.|+|+++||+|+..+ .+.++..+. ......+..++.+++|||+++.||+.+|+.+
T Consensus 233 ~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v 312 (327)
T 3ohm_A 233 QNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAV 312 (327)
T ss_dssp TTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHH
Confidence 78999999999998641 122222211 1222234567889999999999999999999
Q ss_pred HHHHHhhh
Q 029446 174 ASTLKEMR 181 (193)
Q Consensus 174 ~~~~~~~~ 181 (193)
.+.+.+..
T Consensus 313 ~~~Il~~~ 320 (327)
T 3ohm_A 313 KDTILQLN 320 (327)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHHh
Confidence 99987654
No 139
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.89 E-value=4.7e-23 Score=162.74 Aligned_cols=151 Identities=15% Similarity=0.181 Sum_probs=102.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCcc--cccc--ccceeEEEEEEcCEEEEEEecCCCCCCHHh--------HHhhhc
Q 029446 16 SEMRVVMLGLDAAGKTTILYKLHIGEVL--STVP--TIGFNVEKVQYKNVIFTVWDVGGQEKLRPL--------WRHYFN 83 (193)
Q Consensus 16 ~~~~v~v~G~~~~GKssli~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~~~ 83 (193)
..++|+++|.+|+|||||+|+|.+.... ...+ |.......+..++..+.+|||||..++... ...+++
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~~ 302 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSDQVEKIGVERSRQAAN 302 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEEEECC--------------------CCCC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEEEEEECCccccchhHHHHHHHHHHhhhhh
Confidence 4589999999999999999999986543 2222 333334566778899999999997654432 233578
Q ss_pred CCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccC
Q 029446 84 NTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKG 163 (193)
Q Consensus 84 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (193)
.+|++++|+|++++.+... ..++..+ ...|+|+|+||+|+.+..... .. ..+ ....+++++||++|
T Consensus 303 ~aD~vl~VvD~s~~~~~~~-~~i~~~l------~~~piivV~NK~Dl~~~~~~~----~~--~~~-~~~~~~i~iSAktg 368 (462)
T 3geh_A 303 TADLVLLTIDAATGWTTGD-QEIYEQV------KHRPLILVMNKIDLVEKQLIT----SL--EYP-ENITQIVHTAAAQK 368 (462)
T ss_dssp SCSEEEEEEETTTCSCHHH-HHHHHHH------TTSCEEEEEECTTSSCGGGST----TC--CCC-TTCCCEEEEBTTTT
T ss_pred cCCEEEEEeccCCCCCHHH-HHHHHhc------cCCcEEEEEECCCCCcchhhH----HH--HHh-ccCCcEEEEECCCC
Confidence 8999999999998766544 3444443 236999999999997652221 11 001 13457999999999
Q ss_pred CCHHHHHHHHHHHHHhh
Q 029446 164 DGLYEGLDWLASTLKEM 180 (193)
Q Consensus 164 ~gi~~~~~~l~~~~~~~ 180 (193)
+|+++++++|.+.+...
T Consensus 369 ~Gi~eL~~~i~~~~~~~ 385 (462)
T 3geh_A 369 QGIDSLETAILEIVQTG 385 (462)
T ss_dssp BSHHHHHHHHHHHHTTS
T ss_pred CCHHHHHHHHHHHHhcc
Confidence 99999999999988654
No 140
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.89 E-value=2.5e-23 Score=165.54 Aligned_cols=156 Identities=20% Similarity=0.117 Sum_probs=111.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCC----c---c-c--cccccceeEEEEEEcCEEEEEEecCCCCCCHHhHHhhhcC
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHIGE----V---L-S--TVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNN 84 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~~~----~---~-~--~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~ 84 (193)
.+.++|+++|+.++|||||+++|.+.. . . + ...|....+..+......+.+|||||+++|...+..++..
T Consensus 17 m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~~~~~~~~~~~~~ 96 (482)
T 1wb1_A 17 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADI 96 (482)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHHTTS
T ss_pred CCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChHHHHHHHHHHHhh
Confidence 357899999999999999999999876 2 1 1 1345555566677788999999999999999999999999
Q ss_pred CCEEEEEEECCC---hhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCC--cC-CCCceEEEEe
Q 029446 85 TDGLIYVVDSLD---RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLF--DL-KNRKWHIQGT 158 (193)
Q Consensus 85 ~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~ 158 (193)
+|++++|+|+++ +++.+.+. . ... .+.|.|+|+||+|+.++...++..+++... .. .-.+.+++++
T Consensus 97 aD~~ilVvda~~g~~~qt~e~l~----~-~~~---~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~v 168 (482)
T 1wb1_A 97 IDLALIVVDAKEGPKTQTGEHML----I-LDH---FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPI 168 (482)
T ss_dssp CCEEEEEEETTTCSCHHHHHHHH----H-HHH---TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEEC
T ss_pred CCEEEEEEecCCCccHHHHHHHH----H-HHH---cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEEEE
Confidence 999999999987 34433332 1 121 367889999999998642222222211100 00 0115689999
Q ss_pred ccccCCCHHHHHHHHHHHHH
Q 029446 159 CALKGDGLYEGLDWLASTLK 178 (193)
Q Consensus 159 Sa~~~~gi~~~~~~l~~~~~ 178 (193)
||++|+|+++++++|.+.+.
T Consensus 169 SA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 169 SAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp CTTTCTTHHHHHHHHHHHHH
T ss_pred ECcCCCCHHHHHHHHHHhhc
Confidence 99999999999999999875
No 141
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.89 E-value=1.2e-23 Score=148.58 Aligned_cols=125 Identities=26% Similarity=0.375 Sum_probs=96.2
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCcccc----ccccceeEEEEEEcCEEEEEEecCCCCCCHHhHHhhhcC----C
Q 029446 14 GNSEMRVVMLGLDAAGKTTILYKLHIGEVLST----VPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNN----T 85 (193)
Q Consensus 14 ~~~~~~v~v~G~~~~GKssli~~l~~~~~~~~----~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~----~ 85 (193)
....++|+++|++|+|||||++++.+..+... .++.+. .+....+.+|||||+..+...+..++.. +
T Consensus 45 ~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 119 (193)
T 2ged_A 45 GSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA-----DYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFV 119 (193)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHHHHSSCC-----------------CCCCTTCSEEEETTCCBSSCCHHHHHHHHGGGE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceee-----eecCCeEEEEECCCCchHHHHHHHHHHhhcccC
Confidence 46789999999999999999999998876432 233222 2256789999999999988777777766 8
Q ss_pred CEEEEEEECC-ChhhHHHHHHHHHHHHcCC---CCCCCeEEEEEeCCCCCCCCCHhHHHhhh
Q 029446 86 DGLIYVVDSL-DRERIGKAKQEFQAIIKDP---FMLNSVILVFANKQDMKGAMTPMEVCEGL 143 (193)
Q Consensus 86 d~~i~v~d~~-~~~s~~~~~~~~~~~~~~~---~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~ 143 (193)
|++++|+|++ +..++.....|+..+.... ...+.|+++|+||+|+.+.....++.+.+
T Consensus 120 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l 181 (193)
T 2ged_A 120 KGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDAL 181 (193)
T ss_dssp EEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHH
T ss_pred CEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHHHHHHHH
Confidence 9999999999 8999999988888876532 22579999999999998876665555443
No 142
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.89 E-value=1.5e-22 Score=158.42 Aligned_cols=157 Identities=15% Similarity=0.037 Sum_probs=105.0
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCcc----cc--ccccceeEEEEEE---------------c--------CEEEE
Q 029446 14 GNSEMRVVMLGLDAAGKTTILYKLHIGEVL----ST--VPTIGFNVEKVQY---------------K--------NVIFT 64 (193)
Q Consensus 14 ~~~~~~v~v~G~~~~GKssli~~l~~~~~~----~~--~~t~~~~~~~~~~---------------~--------~~~~~ 64 (193)
....++|+++|+.++|||||+++|.+.... +. ..|....+..... . ...+.
T Consensus 5 r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 84 (408)
T 1s0u_A 5 SQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVS 84 (408)
T ss_dssp CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEE
T ss_pred cCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEE
Confidence 346799999999999999999999864322 22 2255554433222 0 17899
Q ss_pred EEecCCCCCCHHhHHhhhcCCCEEEEEEECCCh----hhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC----H
Q 029446 65 VWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDR----ERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT----P 136 (193)
Q Consensus 65 i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~----~ 136 (193)
+|||||+++|...+...+..+|++++|+|+++. ++.+.+.. +. .. ...|+|+|+||+|+.+... .
T Consensus 85 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~-~~---~l---~~~~iivv~NK~Dl~~~~~~~~~~ 157 (408)
T 1s0u_A 85 FVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMA-LE---IL---GIDKIIIVQNKIDLVDEKQAEENY 157 (408)
T ss_dssp EEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHH-HH---HT---TCCCEEEEEECTTSSCTTTTTTHH
T ss_pred EEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHH-HH---Hc---CCCeEEEEEEccCCCCHHHHHHHH
Confidence 999999999988888888899999999999853 44443332 11 11 2357999999999987543 2
Q ss_pred hHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHHHHHHHHHh
Q 029446 137 MEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKE 179 (193)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~ 179 (193)
+++.+.+.. ....+++++++||++|+|+++++++|.+.+..
T Consensus 158 ~~i~~~l~~--~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~ 198 (408)
T 1s0u_A 158 EQIKEFVKG--TIAENAPIIPISAHHEANIDVLLKAIQDFIPT 198 (408)
T ss_dssp HHHHHHHTT--STTTTCCEEEC------CHHHHHHHHHHHSCC
T ss_pred HHHHHHHhh--cCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence 333333321 11245689999999999999999999987753
No 143
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.89 E-value=6.5e-23 Score=155.33 Aligned_cols=133 Identities=22% Similarity=0.312 Sum_probs=107.5
Q ss_pred cccceeEEEEEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECC----------ChhhHHHHHHHHHHHHcCCCC
Q 029446 47 PTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL----------DRERIGKAKQEFQAIIKDPFM 116 (193)
Q Consensus 47 ~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~~ 116 (193)
+|+|+....+..+.+.+++||++||+.++..|..++++++++|+|+|++ +..++.+...|+..+......
T Consensus 147 ~TiGi~~~~~~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~ 226 (340)
T 4fid_A 147 KTTGIHEYDFVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFL 226 (340)
T ss_dssp CCCSCEEEEEESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGG
T ss_pred ceeeeEEEEEEeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhcc
Confidence 4677778888888999999999999999999999999999999999998 788999999999999887666
Q ss_pred CCCeEEEEEeCCCCCCC-----------------CCHhHH----Hhhh-------CCCcCCC-----------CceEEEE
Q 029446 117 LNSVILVFANKQDMKGA-----------------MTPMEV----CEGL-------GLFDLKN-----------RKWHIQG 157 (193)
Q Consensus 117 ~~~p~ivv~nK~Dl~~~-----------------~~~~~~----~~~~-------~~~~~~~-----------~~~~~~~ 157 (193)
.+.|+|+++||+|+..+ ...++. .+.+ ....... +.+.+++
T Consensus 227 ~~~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~ 306 (340)
T 4fid_A 227 KGAVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNP 306 (340)
T ss_dssp TTSEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEE
T ss_pred CCCeEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEE
Confidence 78999999999998641 112221 1222 1111111 4688999
Q ss_pred eccccCCCHHHHHHHHHHHHHh
Q 029446 158 TCALKGDGLYEGLDWLASTLKE 179 (193)
Q Consensus 158 ~Sa~~~~gi~~~~~~l~~~~~~ 179 (193)
|||++..||+.+|+.+.+.+.+
T Consensus 307 TsA~dt~nv~~vF~~v~~~Il~ 328 (340)
T 4fid_A 307 TNATDGSNIKRVFMLAVDVIMK 328 (340)
T ss_dssp ECTTCHHHHHHHHHHHHHHHHH
T ss_pred EEeeCcHHHHHHHHHHHHHHHH
Confidence 9999999999999999998876
No 144
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.89 E-value=1.7e-22 Score=159.46 Aligned_cols=160 Identities=14% Similarity=0.056 Sum_probs=107.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCcccc----ccccceeEEEEEEcCEEEEEEecCCCCCCHHh------------HH
Q 029446 16 SEMRVVMLGLDAAGKTTILYKLHIGEVLST----VPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPL------------WR 79 (193)
Q Consensus 16 ~~~~v~v~G~~~~GKssli~~l~~~~~~~~----~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~------------~~ 79 (193)
..++|+++|++|||||||+|++.+...... ..|.......+.+++..+.+|||+|..+.... ..
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~ 258 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVV 258 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHH
Confidence 458999999999999999999998865321 22333344566778889999999997433221 13
Q ss_pred hhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcCCCCceEEEE
Q 029446 80 HYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT--PMEVCEGLGLFDLKNRKWHIQG 157 (193)
Q Consensus 80 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 157 (193)
.+++.+|++++|+|+++..+.+.. .+...+.. .+.|+++|+||+|+.+... .+++.+.+..........++++
T Consensus 259 ~~i~~ad~vllv~d~~~~~~~~~~--~i~~~l~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (439)
T 1mky_A 259 DSIEKADVVVIVLDATQGITRQDQ--RMAGLMER---RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIF 333 (439)
T ss_dssp HHHHHCSEEEEEEETTTCCCHHHH--HHHHHHHH---TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEE
T ss_pred HHHhhCCEEEEEEeCCCCCCHHHH--HHHHHHHH---cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEEE
Confidence 466789999999999876655442 23333332 4789999999999976432 2333222211111223457999
Q ss_pred eccccCCCHHHHHHHHHHHHHhh
Q 029446 158 TCALKGDGLYEGLDWLASTLKEM 180 (193)
Q Consensus 158 ~Sa~~~~gi~~~~~~l~~~~~~~ 180 (193)
+||++|.|++++++.+.+.+.+.
T Consensus 334 ~SA~~g~gv~~l~~~i~~~~~~~ 356 (439)
T 1mky_A 334 TSADKGWNIDRMIDAMNLAYASY 356 (439)
T ss_dssp CBTTTTBSHHHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHHhh
Confidence 99999999999999999877654
No 145
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.89 E-value=5.4e-24 Score=170.18 Aligned_cols=159 Identities=19% Similarity=0.106 Sum_probs=114.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccc--ccceeEEEEEE-cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEE
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHIGEVLS-TVP--TIGFNVEKVQY-KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIY 90 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~~-~~~--t~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 90 (193)
.+.++|+++|++++|||||+++|.+..+.. ..+ |.......+.. .+..+.+|||||++.|...+..+++.+|++++
T Consensus 2 ~r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vIL 81 (537)
T 3izy_P 2 PRSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMRARGTQVTDIVIL 81 (537)
T ss_dssp CCCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTSBBSSSBSBSSCEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHHHHHHHccCCEEEE
Confidence 367899999999999999999999876542 222 22233333333 45689999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCC-cCCCCceEEEEeccccCCCHH
Q 029446 91 VVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT--PMEVCEGLGLF-DLKNRKWHIQGTCALKGDGLY 167 (193)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~Sa~~~~gi~ 167 (193)
|+|+++....+... .+..+.. .+.|+|+|+||+|+.+... ..+....+... ......++++++||++|+|++
T Consensus 82 VVDa~dg~~~qt~e-~l~~~~~----~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~ 156 (537)
T 3izy_P 82 VVAADDGVMKQTVE-SIQHAKD----AHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMM 156 (537)
T ss_dssp ECBSSSCCCHHHHH-HHHHHHT----TTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSH
T ss_pred EEECCCCccHHHHH-HHHHHHH----cCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCch
Confidence 99999865544432 3333322 4689999999999975321 11122222211 111235789999999999999
Q ss_pred HHHHHHHHHHH
Q 029446 168 EGLDWLASTLK 178 (193)
Q Consensus 168 ~~~~~l~~~~~ 178 (193)
+++++|...+.
T Consensus 157 eLle~I~~l~~ 167 (537)
T 3izy_P 157 ALAEATIALAE 167 (537)
T ss_dssp HHHHHHHHHHT
T ss_pred hHHHHHHHhhh
Confidence 99999998764
No 146
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.89 E-value=3.3e-22 Score=160.34 Aligned_cols=114 Identities=18% Similarity=0.208 Sum_probs=90.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhc------------------CCccc-------cccccceeEEEEEEcCEEEEEEecC
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHI------------------GEVLS-------TVPTIGFNVEKVQYKNVIFTVWDVG 69 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~------------------~~~~~-------~~~t~~~~~~~~~~~~~~~~i~D~~ 69 (193)
.+..+|+++|++|+|||||+++|+. ....+ ...|.......+.+.+..+.+||||
T Consensus 11 ~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTP 90 (528)
T 3tr5_A 11 AMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTP 90 (528)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCC
T ss_pred hcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECC
Confidence 3567999999999999999999961 11111 1335555667778889999999999
Q ss_pred CCCCCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 029446 70 GQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA 133 (193)
Q Consensus 70 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 133 (193)
|+.+|...+..+++.+|++++|+|+++..+.+... .|..+.. .++|+++|+||+|+...
T Consensus 91 G~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~-~~~~~~~----~~iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 91 GHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIK-LMEVCRL----RHTPIMTFINKMDRDTR 149 (528)
T ss_dssp CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHH-HHHHHHT----TTCCEEEEEECTTSCCS
T ss_pred CchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH-HHHHHHH----cCCCEEEEEeCCCCccc
Confidence 99999999999999999999999999876665554 3344332 47899999999999764
No 147
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.89 E-value=1.4e-22 Score=164.25 Aligned_cols=156 Identities=22% Similarity=0.179 Sum_probs=110.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccccc-----cccceeEEEEE----------------EcCEEEEEEecCCCCCC
Q 029446 16 SEMRVVMLGLDAAGKTTILYKLHIGEVLSTV-----PTIGFNVEKVQ----------------YKNVIFTVWDVGGQEKL 74 (193)
Q Consensus 16 ~~~~v~v~G~~~~GKssli~~l~~~~~~~~~-----~t~~~~~~~~~----------------~~~~~~~i~D~~g~~~~ 74 (193)
+.++|+++|++++|||||+++|.+..+..+. ++.+..+.... +....+.+|||||++.|
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F 83 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF 83 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence 5789999999999999999999876554322 24444433221 11236999999999999
Q ss_pred HHhHHhhhcCCCEEEEEEECCC---hhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--------------Hh
Q 029446 75 RPLWRHYFNNTDGLIYVVDSLD---RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT--------------PM 137 (193)
Q Consensus 75 ~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--------------~~ 137 (193)
...+..+++.+|++++|+|+++ +++++.+. .+.. .+.|+|+++||+|+.+... ..
T Consensus 84 ~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~----~l~~----~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~ 155 (594)
T 1g7s_A 84 TTLRKRGGALADLAILIVDINEGFKPQTQEALN----ILRM----YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDI 155 (594)
T ss_dssp TTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHH----HHHH----TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCH
T ss_pred HHHHHHHHhhCCEEEEEEECCCCccHhHHHHHH----HHHH----cCCeEEEEecccccccccccccCCchHHHHHHhHH
Confidence 9998888899999999999998 56655443 2222 4789999999999975211 00
Q ss_pred -----------HHHhhh---CCCc-----C--CCCceEEEEeccccCCCHHHHHHHHHHHHHh
Q 029446 138 -----------EVCEGL---GLFD-----L--KNRKWHIQGTCALKGDGLYEGLDWLASTLKE 179 (193)
Q Consensus 138 -----------~~~~~~---~~~~-----~--~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~ 179 (193)
++...+ ++.. . ....++++++||++|+|+++++++|...+..
T Consensus 156 ~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~ 218 (594)
T 1g7s_A 156 QVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQ 218 (594)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhccc
Confidence 111111 1100 0 1345689999999999999999999987763
No 148
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.89 E-value=2.3e-22 Score=147.44 Aligned_cols=168 Identities=14% Similarity=0.120 Sum_probs=106.9
Q ss_pred hcCCCccEEEEEcCCCCCHHHHHHHHhcCCcccc-----ccccceeEEEEEEcCEEEEEEecCCC--------CCCHHhH
Q 029446 12 FFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLST-----VPTIGFNVEKVQYKNVIFTVWDVGGQ--------EKLRPLW 78 (193)
Q Consensus 12 ~~~~~~~~v~v~G~~~~GKssli~~l~~~~~~~~-----~~t~~~~~~~~~~~~~~~~i~D~~g~--------~~~~~~~ 78 (193)
......++|+++|.+|+|||||+|++++...... ..|...........+..+.+|||||. +++....
T Consensus 16 ~~~~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~~i 95 (247)
T 3lxw_A 16 FQGESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFSSQVSKTDPGCEER 95 (247)
T ss_dssp ----CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETTEEEEEEECCSCSSTTHHHHSTTSHHH
T ss_pred ccCCCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECCcEEEEEECCCCCCCCCCcHHHHHHHH
Confidence 3445789999999999999999999998876521 24445556677778999999999995 4443333
Q ss_pred Hhhh----cCCCEEEEEEECCChhhHH-HHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhC----CCcCC
Q 029446 79 RHYF----NNTDGLIYVVDSLDRERIG-KAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLG----LFDLK 149 (193)
Q Consensus 79 ~~~~----~~~d~~i~v~d~~~~~s~~-~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~----~~~~~ 149 (193)
..++ +++|++++|+|+++....+ .+..++...... ...+.|+|+++||+|+.+.. .++...... ....+
T Consensus 96 ~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~-~~~~~~iilv~nK~Dl~~~~-~~~~l~~~~~~~l~~l~~ 173 (247)
T 3lxw_A 96 GHCYLLSAPGPHALLLVTQLGRFTAQDQQAVRQVRDMFGE-DVLKWMVIVFTRKEDLAGGS-LHDYVSNTENRALRELVA 173 (247)
T ss_dssp HHHHHHHTTCCSEEEEEEETTBCCHHHHHHHHHHHHHHCG-GGGGGEEEEEECGGGGTTCC-HHHHHHHCCCHHHHHHHH
T ss_pred HHHHHhcCCCCCEEEEEEeCCCCCHHHHHHHHHHHHHhCh-hhhccEEEEEEchHhcCCCC-HHHHHhhcccHHHHHHHH
Confidence 3333 8999999999998532222 223444443321 22368999999999997642 222111100 00012
Q ss_pred CCceEEEEecccc-----CCCHHHHHHHHHHHHHhhh
Q 029446 150 NRKWHIQGTCALK-----GDGLYEGLDWLASTLKEMR 181 (193)
Q Consensus 150 ~~~~~~~~~Sa~~-----~~gi~~~~~~l~~~~~~~~ 181 (193)
.++..+..+++.. +.|++++++.|.+.+.+..
T Consensus 174 ~~g~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~~~ 210 (247)
T 3lxw_A 174 ECGGRVCAFDNRATGREQEAQVEQLLGMVEGLVLEHK 210 (247)
T ss_dssp HTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HcCCeEEEEeCCCCccccHHHHHHHHHHHHHHHHHcC
Confidence 2333455554443 5899999999999987654
No 149
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.88 E-value=1e-22 Score=153.21 Aligned_cols=153 Identities=15% Similarity=0.057 Sum_probs=107.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccccc----cccceeEEEEEEcCEEEEEEecCCCC-CC--------HHhHHhhh
Q 029446 16 SEMRVVMLGLDAAGKTTILYKLHIGEVLSTV----PTIGFNVEKVQYKNVIFTVWDVGGQE-KL--------RPLWRHYF 82 (193)
Q Consensus 16 ~~~~v~v~G~~~~GKssli~~l~~~~~~~~~----~t~~~~~~~~~~~~~~~~i~D~~g~~-~~--------~~~~~~~~ 82 (193)
+..+|+++|++|+|||||+|++.+..+.... .|.......+.....++.+|||||.. .. ......++
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l 86 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSI 86 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccchhhHHHHHHHHHHHHH
Confidence 4568999999999999999999998764221 22222334456678999999999987 22 22234567
Q ss_pred cCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC-CCHhHHHhhhCCCcCCCCce-EEEEecc
Q 029446 83 NNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA-MTPMEVCEGLGLFDLKNRKW-HIQGTCA 160 (193)
Q Consensus 83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~Sa 160 (193)
+.+|++++|+|+++ +.....++...+.. .+.|+|+++||+|+... ....+..+.+. +..++ .++++||
T Consensus 87 ~~~D~vl~Vvd~~~---~~~~~~~i~~~l~~---~~~P~ilvlNK~D~~~~~~~~~~~l~~l~----~~~~~~~~i~iSA 156 (301)
T 1ega_A 87 GDVELVIFVVEGTR---WTPDDEMVLNKLRE---GKAPVILAVNKVDNVQEKADLLPHLQFLA----SQMNFLDIVPISA 156 (301)
T ss_dssp CCEEEEEEEEETTC---CCHHHHHHHHHHHS---SSSCEEEEEESTTTCCCHHHHHHHHHHHH----TTSCCSEEEECCT
T ss_pred hcCCEEEEEEeCCC---CCHHHHHHHHHHHh---cCCCEEEEEECcccCccHHHHHHHHHHHH----HhcCcCceEEEEC
Confidence 88999999999976 33333455444443 47899999999998762 11222222221 12233 6999999
Q ss_pred ccCCCHHHHHHHHHHHHH
Q 029446 161 LKGDGLYEGLDWLASTLK 178 (193)
Q Consensus 161 ~~~~gi~~~~~~l~~~~~ 178 (193)
+++.|++++++.+.+.+.
T Consensus 157 ~~g~~v~~l~~~i~~~l~ 174 (301)
T 1ega_A 157 ETGLNVDTIAAIVRKHLP 174 (301)
T ss_dssp TTTTTHHHHHHHHHTTCC
T ss_pred CCCCCHHHHHHHHHHhCC
Confidence 999999999999988764
No 150
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.88 E-value=2.4e-22 Score=154.89 Aligned_cols=147 Identities=10% Similarity=0.015 Sum_probs=110.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEEEEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCChh
Q 029446 19 RVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE 98 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~ 98 (193)
+|+++|++++|||||+++|. ....|.+..+..+......+.+|||||+++|.......++.+|++++|+| ++.
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~-----~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~~g- 95 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG-----KKGTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-PQG- 95 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS-----EEEEESSSEEEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-TTC-
T ss_pred EEEEECCCCCCHHHHHHHHH-----hCCEEEEeeEEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-CCC-
Confidence 99999999999999999998 45667777777777778899999999999999888888899999999999 543
Q ss_pred hHHHHHHHHHHHHcCCCCCCCeE-EEEEe-CCCCCCCCCHh----HHHhhhCCCcCCCCceEEEE--ecccc---CCCHH
Q 029446 99 RIGKAKQEFQAIIKDPFMLNSVI-LVFAN-KQDMKGAMTPM----EVCEGLGLFDLKNRKWHIQG--TCALK---GDGLY 167 (193)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~p~-ivv~n-K~Dl~~~~~~~----~~~~~~~~~~~~~~~~~~~~--~Sa~~---~~gi~ 167 (193)
.+.....++..+.. .+.|. |+++| |+|+ +....+ ++.+.+.. .....+++++ +||++ ++|++
T Consensus 96 ~~~qt~e~~~~~~~----~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~--~~~~~~~ii~~~~SA~~~~~g~gi~ 168 (370)
T 2elf_A 96 LDAHTGECIIALDL----LGFKHGIIALTRSDST-HMHAIDELKAKLKVITSG--TVLQDWECISLNTNKSAKNPFEGVD 168 (370)
T ss_dssp CCHHHHHHHHHHHH----TTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTT--STTTTCEEEECCCCTTSSSTTTTHH
T ss_pred CcHHHHHHHHHHHH----cCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHh--cCCCceEEEecccccccCcCCCCHH
Confidence 23333444444332 35666 89999 9999 432112 22222221 1113469999 99999 99999
Q ss_pred HHHHHHHHHHHh
Q 029446 168 EGLDWLASTLKE 179 (193)
Q Consensus 168 ~~~~~l~~~~~~ 179 (193)
++++.|.+.+..
T Consensus 169 ~L~~~l~~~~~~ 180 (370)
T 2elf_A 169 ELKARINEVAEK 180 (370)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHhhccc
Confidence 999999988764
No 151
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.88 E-value=1.5e-22 Score=158.55 Aligned_cols=158 Identities=18% Similarity=0.090 Sum_probs=111.5
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhcCCc---c-cc--ccccceeEEEEEEc-----------------------CEEE
Q 029446 13 FGNSEMRVVMLGLDAAGKTTILYKLHIGEV---L-ST--VPTIGFNVEKVQYK-----------------------NVIF 63 (193)
Q Consensus 13 ~~~~~~~v~v~G~~~~GKssli~~l~~~~~---~-~~--~~t~~~~~~~~~~~-----------------------~~~~ 63 (193)
.....++|+++|+.++|||||+++|++... . +. ..|....+...... ...+
T Consensus 6 ~~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i 85 (410)
T 1kk1_A 6 SRQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRV 85 (410)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEE
T ss_pred cCCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEE
Confidence 345679999999999999999999985432 2 22 23555554433221 2789
Q ss_pred EEEecCCCCCCHHhHHhhhcCCCEEEEEEECCCh----hhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC----
Q 029446 64 TVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDR----ERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT---- 135 (193)
Q Consensus 64 ~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~---- 135 (193)
.+|||||+++|.......+..+|++++|+|+++. ++.+.+.. +... ...|+|+|+||+|+.+...
T Consensus 86 ~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~-~~~~------~~~~iivviNK~Dl~~~~~~~~~ 158 (410)
T 1kk1_A 86 SFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMA-LQII------GQKNIIIAQNKIELVDKEKALEN 158 (410)
T ss_dssp EEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHH-HHHH------TCCCEEEEEECGGGSCHHHHHHH
T ss_pred EEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHH-HHHc------CCCcEEEEEECccCCCHHHHHHH
Confidence 9999999999988888888899999999999853 34443322 2211 2357999999999987532
Q ss_pred HhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHHHHHHHHHh
Q 029446 136 PMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKE 179 (193)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~ 179 (193)
.+++.+.+.. ....+++++++||++|+|+++++++|.+.+..
T Consensus 159 ~~~i~~~l~~--~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~ 200 (410)
T 1kk1_A 159 YRQIKEFIEG--TVAENAPIIPISALHGANIDVLVKAIEDFIPT 200 (410)
T ss_dssp HHHHHHHHTT--STTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHh--cCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence 1223332221 11245689999999999999999999987753
No 152
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.88 E-value=9.5e-22 Score=145.16 Aligned_cols=162 Identities=16% Similarity=0.154 Sum_probs=106.4
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCcc-c-cc---cccceeEEEEEEcCEEEEEEecCCCCCCH-----------Hh
Q 029446 14 GNSEMRVVMLGLDAAGKTTILYKLHIGEVL-S-TV---PTIGFNVEKVQYKNVIFTVWDVGGQEKLR-----------PL 77 (193)
Q Consensus 14 ~~~~~~v~v~G~~~~GKssli~~l~~~~~~-~-~~---~t~~~~~~~~~~~~~~~~i~D~~g~~~~~-----------~~ 77 (193)
....++|+|+|++|+|||||+|++.+.... . .. .|.........+.+..+.+|||||...+. ..
T Consensus 19 ~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~ 98 (260)
T 2xtp_A 19 SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRC 98 (260)
T ss_dssp --CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHHHH
Confidence 446799999999999999999999987733 2 22 34444555667788999999999976542 22
Q ss_pred HHhhhcCCCEEEEEEECCChhhH-HHHHHHHHHHHcCCCCCCCeEEEEEe-CCCCCCCCCHhH------------HHhhh
Q 029446 78 WRHYFNNTDGLIYVVDSLDRERI-GKAKQEFQAIIKDPFMLNSVILVFAN-KQDMKGAMTPME------------VCEGL 143 (193)
Q Consensus 78 ~~~~~~~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~~p~ivv~n-K~Dl~~~~~~~~------------~~~~~ 143 (193)
...+++++|++++|+|+++.... ..+..++...... ....|.|+++| |+|+... ...+ +.+.+
T Consensus 99 ~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~--~~~~~~i~vv~nK~Dl~~~-~~~~~i~~~~~~~~~~~~~~~ 175 (260)
T 2xtp_A 99 YLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGE--DAMGHTIVLFTHKEDLNGG-SLMDYMHDSDNKALSKLVAAC 175 (260)
T ss_dssp HHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCG--GGGGGEEEEEECGGGGTTC-CHHHHHHHCCCHHHHHHHHHT
T ss_pred HHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCc--hhhccEEEEEEcccccCCc-cHHHHHHhcchHHHHHHHHHh
Confidence 23467899999999999863322 2233444443321 11356666666 9999854 2322 22222
Q ss_pred CCCcCCCCceEEEEeccccCCCHHHHHHHHHHHHHhhh
Q 029446 144 GLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEMR 181 (193)
Q Consensus 144 ~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~ 181 (193)
... ...+..+++||+++.|+++++++|.+.+....
T Consensus 176 ~~~---~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~~ 210 (260)
T 2xtp_A 176 GGR---ICAFNNRAEGSNQDDQVKELMDCIEDLLMEKN 210 (260)
T ss_dssp TTC---EEECCTTCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCe---EEEecCcccccccHHHHHHHHHHHHHHHHhCC
Confidence 210 00011178999999999999999999987643
No 153
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.88 E-value=5.2e-22 Score=152.69 Aligned_cols=156 Identities=19% Similarity=0.129 Sum_probs=107.0
Q ss_pred ccE-EEEEcCCCCCHHHHHHHHhcCCcc---ccccccceeEEEEEEcCEEEEEEecCCCCC---------CHHhHHhhhc
Q 029446 17 EMR-VVMLGLDAAGKTTILYKLHIGEVL---STVPTIGFNVEKVQYKNVIFTVWDVGGQEK---------LRPLWRHYFN 83 (193)
Q Consensus 17 ~~~-v~v~G~~~~GKssli~~l~~~~~~---~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~---------~~~~~~~~~~ 83 (193)
.++ |+++|.+|+|||||+|++++.... ...+|.+.....+.+.+..+.+|||+|... ++..+. .+.
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lve~f~~tl~-~~~ 256 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDAFFVTLS-EAK 256 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEEEECCCBCSSCCGGGHHHHHHHHH-GGG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHHHHHHHHHHHH-HHH
Confidence 355 999999999999999999988763 235666677778888888999999999622 333333 468
Q ss_pred CCCEEEEEEECCChh--hHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhH---HH----hhhCCCcCCCCceE
Q 029446 84 NTDGLIYVVDSLDRE--RIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPME---VC----EGLGLFDLKNRKWH 154 (193)
Q Consensus 84 ~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~---~~----~~~~~~~~~~~~~~ 154 (193)
.+|++++|+|++++. ....... +..++......+.|+|+|+||+|+.+.. ..+ .. ..+. ..+.+
T Consensus 257 ~aD~il~VvD~s~~~~~~~~~~~~-~~~~L~~l~~~~~p~ilV~NK~Dl~~~~-~~~~~~~~~~l~~~l~-----~~~~~ 329 (364)
T 2qtf_A 257 YSDALILVIDSTFSENLLIETLQS-SFEILREIGVSGKPILVTLNKIDKINGD-LYKKLDLVEKLSKELY-----SPIFD 329 (364)
T ss_dssp GSSEEEEEEETTSCHHHHHHHHHH-HHHHHHHHTCCSCCEEEEEECGGGCCSC-HHHHHHHHHHHHHHHC-----SCEEE
T ss_pred hCCEEEEEEECCCCcchHHHHHHH-HHHHHHHhCcCCCCEEEEEECCCCCCch-HHHHHHHHHHHHHHhc-----CCCCc
Confidence 899999999998875 3333322 2333332223578999999999987643 221 11 2220 12346
Q ss_pred EEEeccccCCCHHHHHHHHHHHHHhh
Q 029446 155 IQGTCALKGDGLYEGLDWLASTLKEM 180 (193)
Q Consensus 155 ~~~~Sa~~~~gi~~~~~~l~~~~~~~ 180 (193)
++++||++++|+++++++|.+.+...
T Consensus 330 ~~~~SA~~g~gi~~L~~~I~~~l~~~ 355 (364)
T 2qtf_A 330 VIPISALKRTNLELLRDKIYQLATQL 355 (364)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHHHhccc
Confidence 89999999999999999999877543
No 154
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.88 E-value=1.1e-21 Score=154.62 Aligned_cols=161 Identities=17% Similarity=0.063 Sum_probs=105.4
Q ss_pred HHHHhhhhcCCCccEEEEEcCCCCCHHHHHHHHhcCCc---cc---------------------------------cccc
Q 029446 5 FRKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEV---LS---------------------------------TVPT 48 (193)
Q Consensus 5 ~~~~~~~~~~~~~~~v~v~G~~~~GKssli~~l~~~~~---~~---------------------------------~~~t 48 (193)
+..++.+......++|+++|++++|||||+++|++... .. ...|
T Consensus 12 i~~~l~~~~~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiT 91 (434)
T 1zun_B 12 ILAYLGQHERKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGIT 91 (434)
T ss_dssp ----CCSTTSCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CC
T ss_pred HHHHHhhcccCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcE
Confidence 34444554555669999999999999999999976431 00 0123
Q ss_pred cceeEEEEEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCC
Q 029446 49 IGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQ 128 (193)
Q Consensus 49 ~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~ 128 (193)
....+..+......+.+|||||+++|...+..++..+|++++|+|+++....+. ..++...... ...|+|+|+||+
T Consensus 92 i~~~~~~~~~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt-~~~l~~~~~~---~~~~iIvviNK~ 167 (434)
T 1zun_B 92 IDVAYRYFSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQT-RRHSYIASLL---GIKHIVVAINKM 167 (434)
T ss_dssp CCCEEEEEECSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHH-HHHHHHHHHT---TCCEEEEEEECT
T ss_pred EEeeeeEeecCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHH-HHHHHHHHHc---CCCeEEEEEEcC
Confidence 333344555678899999999999999999889999999999999987643222 2333322221 224699999999
Q ss_pred CCCCCCC--HhHHHhhhCC--CcCC--CCceEEEEeccccCCCHHHH
Q 029446 129 DMKGAMT--PMEVCEGLGL--FDLK--NRKWHIQGTCALKGDGLYEG 169 (193)
Q Consensus 129 Dl~~~~~--~~~~~~~~~~--~~~~--~~~~~~~~~Sa~~~~gi~~~ 169 (193)
|+.+... .+++.++... .... ...++++++||++|+|++++
T Consensus 168 Dl~~~~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~ 214 (434)
T 1zun_B 168 DLNGFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNK 214 (434)
T ss_dssp TTTTSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSC
T ss_pred cCCcccHHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccc
Confidence 9986421 1112111110 0011 23478999999999999874
No 155
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.88 E-value=9.7e-22 Score=159.29 Aligned_cols=155 Identities=15% Similarity=0.157 Sum_probs=108.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCC--cc---------cc---cccccee----EEEEEEc-----CEEEEEEecCCCC
Q 029446 16 SEMRVVMLGLDAAGKTTILYKLHIGE--VL---------ST---VPTIGFN----VEKVQYK-----NVIFTVWDVGGQE 72 (193)
Q Consensus 16 ~~~~v~v~G~~~~GKssli~~l~~~~--~~---------~~---~~t~~~~----~~~~~~~-----~~~~~i~D~~g~~ 72 (193)
+..+|+++|+.++|||||+++|+... .. ++ ..+.|++ ...+.+. ...+.+|||||+.
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 45799999999999999999997621 11 11 1122333 2344443 4789999999999
Q ss_pred CCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH---hHHHhhhCCCcCC
Q 029446 73 KLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP---MEVCEGLGLFDLK 149 (193)
Q Consensus 73 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~---~~~~~~~~~~~~~ 149 (193)
+|...+..+++.+|++++|+|+++..+.+....|.... . .+.|+|+|+||+|+...... +++.+.++..
T Consensus 83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~-~----~~ipiIvViNKiDl~~a~~~~v~~ei~~~lg~~--- 154 (599)
T 3cb4_D 83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAM-E----MDLEVVPVLNKIDLPAADPERVAEEIEDIVGID--- 154 (599)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHH-H----TTCEEEEEEECTTSTTCCHHHHHHHHHHHTCCC---
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH-H----CCCCEEEeeeccCcccccHHHHHHHHHHHhCCC---
Confidence 99999999999999999999999877777766555444 2 46899999999999875321 2333333321
Q ss_pred CCceEEEEeccccCCCHHHHHHHHHHHHHhh
Q 029446 150 NRKWHIQGTCALKGDGLYEGLDWLASTLKEM 180 (193)
Q Consensus 150 ~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~ 180 (193)
..+++++||++|.|+++++++|.+.+...
T Consensus 155 --~~~vi~vSAktg~GI~~Ll~~I~~~lp~p 183 (599)
T 3cb4_D 155 --ATDAVRCSAKTGVGVQDVLERLVRDIPPP 183 (599)
T ss_dssp --CTTCEEECTTTCTTHHHHHHHHHHHSCCC
T ss_pred --cceEEEeecccCCCchhHHHHHhhcCCCc
Confidence 11489999999999999999999988643
No 156
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.87 E-value=1.7e-22 Score=161.17 Aligned_cols=153 Identities=18% Similarity=0.143 Sum_probs=103.6
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCc--c--------------------------------ccccccceeEEEEEEc
Q 029446 14 GNSEMRVVMLGLDAAGKTTILYKLHIGEV--L--------------------------------STVPTIGFNVEKVQYK 59 (193)
Q Consensus 14 ~~~~~~v~v~G~~~~GKssli~~l~~~~~--~--------------------------------~~~~t~~~~~~~~~~~ 59 (193)
....+||+++|++++|||||+++|+.... . ....|.......+...
T Consensus 30 ~k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 109 (483)
T 3p26_A 30 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH 109 (483)
T ss_dssp SCCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecC
Confidence 45679999999999999999999975411 0 0123444555666777
Q ss_pred CEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCChhhHHH-----HHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC
Q 029446 60 NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGK-----AKQEFQAIIKDPFMLNSVILVFANKQDMKGAM 134 (193)
Q Consensus 60 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~-----~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~ 134 (193)
...+.+|||||+++|......++..+|++++|+|+++..+... .......+.... ...|+|+|+||+|+.+..
T Consensus 110 ~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~--~~~~iIvviNK~Dl~~~~ 187 (483)
T 3p26_A 110 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL--GIHNLIIAMNKMDNVDWS 187 (483)
T ss_dssp SCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT--TCCCEEEEEECGGGGTTC
T ss_pred CceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc--CCCcEEEEEECcCcccch
Confidence 8999999999999999999999999999999999988643221 222222222221 235699999999998732
Q ss_pred C--HhHHHhhh----CCCcCCCCceEEEEeccccCCCHHH
Q 029446 135 T--PMEVCEGL----GLFDLKNRKWHIQGTCALKGDGLYE 168 (193)
Q Consensus 135 ~--~~~~~~~~----~~~~~~~~~~~~~~~Sa~~~~gi~~ 168 (193)
. .+++.+.+ ........+++++++||++|+|+++
T Consensus 188 ~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 188 QQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred HHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence 1 12222211 1111122367899999999999874
No 157
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.87 E-value=7.1e-22 Score=154.43 Aligned_cols=160 Identities=21% Similarity=0.166 Sum_probs=111.1
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcC--------Cccc------------cccccceeEEEEEEcCEEEEEEecCCCCC
Q 029446 14 GNSEMRVVMLGLDAAGKTTILYKLHIG--------EVLS------------TVPTIGFNVEKVQYKNVIFTVWDVGGQEK 73 (193)
Q Consensus 14 ~~~~~~v~v~G~~~~GKssli~~l~~~--------~~~~------------~~~t~~~~~~~~~~~~~~~~i~D~~g~~~ 73 (193)
....++|+++|++++|||||+++|.+. .+.. ...|.......+......+.+|||||+++
T Consensus 8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~ 87 (405)
T 2c78_A 8 TKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHAD 87 (405)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGG
T ss_pred CCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHH
Confidence 346799999999999999999999873 2111 12244444445555678999999999999
Q ss_pred CHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCe-EEEEEeCCCCCCCCC-Hh----HHHhhhCCCc
Q 029446 74 LRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSV-ILVFANKQDMKGAMT-PM----EVCEGLGLFD 147 (193)
Q Consensus 74 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~-~~----~~~~~~~~~~ 147 (193)
|......++..+|++++|+|+++....+ ...++..+.. .+.| +|+|+||+|+.+... .+ ++.+.+....
T Consensus 88 f~~~~~~~~~~aD~~ilVvda~~g~~~q-t~~~l~~~~~----~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~ 162 (405)
T 2c78_A 88 YIKNMITGAAQMDGAILVVSAADGPMPQ-TREHILLARQ----VGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYE 162 (405)
T ss_dssp GHHHHHHHHTTCSSEEEEEETTTCCCHH-HHHHHHHHHH----TTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCcHH-HHHHHHHHHH----cCCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999998765433 3344444433 3677 889999999985311 11 1222221111
Q ss_pred CCCCceEEEEeccccCCC------------------HHHHHHHHHHHHH
Q 029446 148 LKNRKWHIQGTCALKGDG------------------LYEGLDWLASTLK 178 (193)
Q Consensus 148 ~~~~~~~~~~~Sa~~~~g------------------i~~~~~~l~~~~~ 178 (193)
+....++++++||++|.| ++++++.|.+.+.
T Consensus 163 ~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp 211 (405)
T 2c78_A 163 FPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIP 211 (405)
T ss_dssp SCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSC
T ss_pred ccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcC
Confidence 122346899999999987 7777777777664
No 158
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.87 E-value=4.3e-22 Score=156.86 Aligned_cols=154 Identities=17% Similarity=0.186 Sum_probs=102.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcC--Ccc--------------------------------ccccccceeEEEEEEcC
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHIG--EVL--------------------------------STVPTIGFNVEKVQYKN 60 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~~--~~~--------------------------------~~~~t~~~~~~~~~~~~ 60 (193)
...++|+++|++++|||||+++|+.. .+. ....|....+..+....
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~ 83 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK 83 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC
Confidence 46789999999999999999999864 221 01234555555667778
Q ss_pred EEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHH------HHHHcCCCCCCCeEEEEEeCCCCCCCC
Q 029446 61 VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEF------QAIIKDPFMLNSVILVFANKQDMKGAM 134 (193)
Q Consensus 61 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~------~~~~~~~~~~~~p~ivv~nK~Dl~~~~ 134 (193)
..+.+|||||+.+|...+..++..+|++++|+|+++ .+|++...|. ..+.... ...|+|+++||+|+.+..
T Consensus 84 ~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~--~~~~iivviNK~Dl~~~~ 160 (435)
T 1jny_A 84 YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTM--GLDQLIVAVNKMDLTEPP 160 (435)
T ss_dssp CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHT--TCTTCEEEEECGGGSSST
T ss_pred eEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHc--CCCeEEEEEEcccCCCcc
Confidence 899999999999999999999999999999999998 5666433211 1111111 124689999999998731
Q ss_pred -CH-------hHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHH
Q 029446 135 -TP-------MEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLD 171 (193)
Q Consensus 135 -~~-------~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~ 171 (193)
.. +++.+.+....+....++++++||++|+|+.++++
T Consensus 161 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~ 205 (435)
T 1jny_A 161 YDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE 205 (435)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred ccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence 11 12222221111122346899999999999975543
No 159
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.87 E-value=2.8e-21 Score=156.42 Aligned_cols=158 Identities=16% Similarity=0.144 Sum_probs=110.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcC--Ccc---------cc-------ccccceeEEEEEEc-----CEEEEEEecCCCC
Q 029446 16 SEMRVVMLGLDAAGKTTILYKLHIG--EVL---------ST-------VPTIGFNVEKVQYK-----NVIFTVWDVGGQE 72 (193)
Q Consensus 16 ~~~~v~v~G~~~~GKssli~~l~~~--~~~---------~~-------~~t~~~~~~~~~~~-----~~~~~i~D~~g~~ 72 (193)
+..+|+++|+.++|||||+++|+.. .+. ++ ..|.......+.+. ...+.+|||||+.
T Consensus 5 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~ 84 (600)
T 2ywe_A 5 NVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHV 84 (600)
T ss_dssp GEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcH
Confidence 4579999999999999999999752 111 10 11222222334332 3789999999999
Q ss_pred CCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCc
Q 029446 73 KLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRK 152 (193)
Q Consensus 73 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 152 (193)
+|...+..+++.+|++++|+|+++..+.+....|.... . .+.|+|+|+||+|+.... .++..+++... +.-..
T Consensus 85 dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~-~----~~ipiIvviNKiDl~~a~-~~~v~~el~~~-lg~~~ 157 (600)
T 2ywe_A 85 DFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAV-E----QDLVIIPVINKIDLPSAD-VDRVKKQIEEV-LGLDP 157 (600)
T ss_dssp GGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHH-H----TTCEEEEEEECTTSTTCC-HHHHHHHHHHT-SCCCG
T ss_pred hHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHH-H----CCCCEEEEEeccCccccC-HHHHHHHHHHh-hCCCc
Confidence 99999999999999999999999887777766655543 2 478999999999998753 33322222110 01111
Q ss_pred eEEEEeccccCCCHHHHHHHHHHHHHhh
Q 029446 153 WHIQGTCALKGDGLYEGLDWLASTLKEM 180 (193)
Q Consensus 153 ~~~~~~Sa~~~~gi~~~~~~l~~~~~~~ 180 (193)
.+++++||++|.|+++++++|.+.+...
T Consensus 158 ~~vi~vSAktg~GI~~Lle~I~~~lp~p 185 (600)
T 2ywe_A 158 EEAILASAKEGIGIEEILEAIVNRIPPP 185 (600)
T ss_dssp GGCEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred ccEEEEEeecCCCchHHHHHHHHhcccc
Confidence 2489999999999999999999988643
No 160
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.87 E-value=2.5e-21 Score=152.54 Aligned_cols=154 Identities=20% Similarity=0.182 Sum_probs=104.0
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCc--c--------------------------------ccccccceeEEEEEEc
Q 029446 14 GNSEMRVVMLGLDAAGKTTILYKLHIGEV--L--------------------------------STVPTIGFNVEKVQYK 59 (193)
Q Consensus 14 ~~~~~~v~v~G~~~~GKssli~~l~~~~~--~--------------------------------~~~~t~~~~~~~~~~~ 59 (193)
....++|+++|++++|||||+++|....- . ....|....+..+...
T Consensus 14 ~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~ 93 (439)
T 3j2k_7 14 KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETE 93 (439)
T ss_pred CCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecC
Confidence 35678999999999999999999954311 0 0123444445556667
Q ss_pred CEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCChhh---HH---HHHHHHHHHHcCCCCCCCe-EEEEEeCCCCCC
Q 029446 60 NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRER---IG---KAKQEFQAIIKDPFMLNSV-ILVFANKQDMKG 132 (193)
Q Consensus 60 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~ 132 (193)
...+.+|||||+++|......++..+|++++|+|+++... |+ .....+... .. .+.| +|+|+||+|+..
T Consensus 94 ~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~-~~---~~v~~iIvviNK~Dl~~ 169 (439)
T 3j2k_7 94 KKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLA-KT---AGVKHLIVLINKMDDPT 169 (439)
T ss_pred CeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHH-HH---cCCCeEEEEeecCCCcc
Confidence 8899999999999999999999999999999999987531 11 111111111 11 3455 899999999864
Q ss_pred CC----CHhHHHhhh----CCCcCC-CCceEEEEeccccCCCHHHHHH
Q 029446 133 AM----TPMEVCEGL----GLFDLK-NRKWHIQGTCALKGDGLYEGLD 171 (193)
Q Consensus 133 ~~----~~~~~~~~~----~~~~~~-~~~~~~~~~Sa~~~~gi~~~~~ 171 (193)
.. ..+++.+++ ....+. ..+++++++||++|+|++++.+
T Consensus 170 ~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 170 VNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred cchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 31 112222211 111111 1256899999999999999655
No 161
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.87 E-value=5.4e-22 Score=151.75 Aligned_cols=123 Identities=23% Similarity=0.387 Sum_probs=94.0
Q ss_pred cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECC----------ChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCC
Q 029446 59 KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL----------DRERIGKAKQEFQAIIKDPFMLNSVILVFANKQ 128 (193)
Q Consensus 59 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~ 128 (193)
..+.+.+|||+|++.++..|..++++++++|+|+|++ +..++++...|+..+.......+.|+|+|+||+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~ 260 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 260 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence 4588999999999999999999999999999999998 789999999999999876555789999999999
Q ss_pred CCCCCC----C-------------------HhHHHh----hh------CC-CcCCCCceEEEEeccccCCCHHHHHHHHH
Q 029446 129 DMKGAM----T-------------------PMEVCE----GL------GL-FDLKNRKWHIQGTCALKGDGLYEGLDWLA 174 (193)
Q Consensus 129 Dl~~~~----~-------------------~~~~~~----~~------~~-~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~ 174 (193)
|+..+. . .++..+ .+ .. .......+.+++|||++++||+++|+++.
T Consensus 261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~ 340 (354)
T 2xtz_A 261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVD 340 (354)
T ss_dssp HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHH
Confidence 984320 0 111111 10 00 00012345689999999999999999999
Q ss_pred HHHHhhh
Q 029446 175 STLKEMR 181 (193)
Q Consensus 175 ~~~~~~~ 181 (193)
+.+.+..
T Consensus 341 ~~I~~~~ 347 (354)
T 2xtz_A 341 ETLRRRN 347 (354)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9887554
No 162
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.87 E-value=1.6e-22 Score=150.36 Aligned_cols=158 Identities=15% Similarity=0.220 Sum_probs=91.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCcc--cc-------ccccceeEEEEEE--c--CEEEEEEecCCCC-------CC
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHIGEVL--ST-------VPTIGFNVEKVQY--K--NVIFTVWDVGGQE-------KL 74 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~--~~-------~~t~~~~~~~~~~--~--~~~~~i~D~~g~~-------~~ 74 (193)
...++|+++|.+|+|||||+|++++.... .+ .+|++.+...... + .+.+.+|||||.. .+
T Consensus 6 g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~ 85 (274)
T 3t5d_A 6 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW 85 (274)
T ss_dssp -CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTT
T ss_pred ccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhH
Confidence 46799999999999999999998876543 22 5666666655443 2 3699999999963 34
Q ss_pred HHhH-------HhhhcC-------------CCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC
Q 029446 75 RPLW-------RHYFNN-------------TDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM 134 (193)
Q Consensus 75 ~~~~-------~~~~~~-------------~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~ 134 (193)
..+. ..++.. +|+++++++.+... +......+...+.. ++|+|+|+||+|+....
T Consensus 86 ~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~-~~~~d~~~l~~l~~----~~pvi~V~nK~D~~~~~ 160 (274)
T 3t5d_A 86 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHG-LKPLDIEFMKRLHE----KVNIIPLIAKADTLTPE 160 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSS-CCHHHHHHHHHHTT----TSCEEEEESSGGGSCHH
T ss_pred HHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCC-CCHHHHHHHHHHhc----cCCEEEEEeccCCCCHH
Confidence 4433 333333 78999999876522 22222333333332 78999999999987643
Q ss_pred CHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHHHHHHHHH
Q 029446 135 TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLK 178 (193)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~ 178 (193)
+.....+... ..+...+++++++||++++|+++++++|.+.+.
T Consensus 161 e~~~~~~~i~-~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~p 203 (274)
T 3t5d_A 161 ECQQFKKQIM-KEIQEHKIKIYEFPETDDEEENKLVKKIKDRLP 203 (274)
T ss_dssp HHHHHHHHHH-HHHHHTTCCCCCC-----------CHHHHHTCS
T ss_pred HHHHHHHHHH-HHHHHcCCeEEcCCCCCChhHHHHHHHHhcCCC
Confidence 3322211111 112234567899999999999999999988764
No 163
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.87 E-value=3.3e-22 Score=155.85 Aligned_cols=158 Identities=19% Similarity=0.093 Sum_probs=108.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCC-------cc------------ccccccceeEEEEEEcCEEEEEEecCCCCCCHH
Q 029446 16 SEMRVVMLGLDAAGKTTILYKLHIGE-------VL------------STVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRP 76 (193)
Q Consensus 16 ~~~~v~v~G~~~~GKssli~~l~~~~-------~~------------~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~ 76 (193)
..++|+++|++++|||||+++|.+.. +. ....|.+.....+......+.+|||||+++|..
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~ 81 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK 81 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence 46899999999999999999998731 11 012233333334555678999999999999988
Q ss_pred hHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCe-EEEEEeCCCCCCCCCH-----hHHHhhhCCCcCCC
Q 029446 77 LWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSV-ILVFANKQDMKGAMTP-----MEVCEGLGLFDLKN 150 (193)
Q Consensus 77 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~-----~~~~~~~~~~~~~~ 150 (193)
....++..+|++++|+|+++....+.. ..+..+.. .+.| +|+++||+|+.+.... +++.+.+....+..
T Consensus 82 ~~~~~~~~aD~~ilVvda~~g~~~qt~-e~l~~~~~----~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 156 (397)
T 1d2e_A 82 NMITGTAPLDGCILVVAANDGPMPQTR-EHLLLARQ----IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKG 156 (397)
T ss_dssp HHHHTSSCCSEEEEEEETTTCSCHHHH-HHHHHHHH----TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCT
T ss_pred HHHhhHhhCCEEEEEEECCCCCCHHHH-HHHHHHHH----cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCc
Confidence 888899999999999999875433332 23333222 3677 6899999999852111 12222221111122
Q ss_pred CceEEEEeccccCCC----------HHHHHHHHHHHHH
Q 029446 151 RKWHIQGTCALKGDG----------LYEGLDWLASTLK 178 (193)
Q Consensus 151 ~~~~~~~~Sa~~~~g----------i~~~~~~l~~~~~ 178 (193)
..++++++||++|.| ++++++.|.+.+.
T Consensus 157 ~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p 194 (397)
T 1d2e_A 157 EETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP 194 (397)
T ss_dssp TTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred ccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCC
Confidence 346899999999764 8889998888765
No 164
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.86 E-value=5.8e-23 Score=163.00 Aligned_cols=153 Identities=22% Similarity=0.170 Sum_probs=109.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCcccc---ccccceeEEEEEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEE
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHIGEVLST---VPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYV 91 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~~~---~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 91 (193)
.+.++|+++|++++|||||+++|.+..+... ..|.......+..++..+.+|||||++.|...+...+..+|++++|
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aILV 81 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETENGMITFLDTPGHAAFTSMRARGAQATDIVVLV 81 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTTSBCSSSBSCSSEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECCEEEEEEECCCcHHHHHHHHHHHhhCCEEEEE
Confidence 4678999999999999999999987554321 1232233333444567899999999999999998889999999999
Q ss_pred EECCC---hhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCC--cCCC--CceEEEEeccccCC
Q 029446 92 VDSLD---RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLF--DLKN--RKWHIQGTCALKGD 164 (193)
Q Consensus 92 ~d~~~---~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~Sa~~~~ 164 (193)
+|+++ +++.+.+ ..... .+.|+|+++||+|+.+... +++...+... ..+. ..++++++||++|+
T Consensus 82 Vda~~g~~~qT~e~l----~~~~~----~~vPiIVviNKiDl~~~~~-~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~ 152 (501)
T 1zo1_I 82 VAADDGVMPQTIEAI----QHAKA----AQVPVVVAVNKIDKPEADP-DRVKNELSQYGILPEEWGGESQFVHVSAKAGT 152 (501)
T ss_dssp EETTTBSCTTTHHHH----HHHHH----TTCCEEEEEECSSSSTTCC-CCTTCCCCCCCCCTTCCSSSCEEEECCTTTCT
T ss_pred eecccCccHHHHHHH----HHHHh----cCceEEEEEEeccccccCH-HHHHHHHHHhhhhHHHhCCCccEEEEeeeecc
Confidence 99987 3444332 22221 4688999999999976321 1222222110 1122 23799999999999
Q ss_pred CHHHHHHHHHHH
Q 029446 165 GLYEGLDWLAST 176 (193)
Q Consensus 165 gi~~~~~~l~~~ 176 (193)
|+++++++|...
T Consensus 153 gI~eLle~I~~~ 164 (501)
T 1zo1_I 153 GIDELLDAILLQ 164 (501)
T ss_dssp TCTTHHHHTTTT
T ss_pred Ccchhhhhhhhh
Confidence 999999998753
No 165
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.86 E-value=2.9e-22 Score=163.26 Aligned_cols=153 Identities=18% Similarity=0.154 Sum_probs=104.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc----------------------------------cccccceeEEEEEEcC
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHIGEVLS----------------------------------TVPTIGFNVEKVQYKN 60 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~~----------------------------------~~~t~~~~~~~~~~~~ 60 (193)
...++|+++|++|+|||||+++|++..... .+.|.......+....
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~ 244 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 244 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence 457899999999999999999998653210 1235555566677788
Q ss_pred EEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCChh---hH--HHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC
Q 029446 61 VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE---RI--GKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT 135 (193)
Q Consensus 61 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~--~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 135 (193)
..+.+|||||+++|...+..++..+|++|+|+|+++.. ++ .........+.... ...|+|+|+||+|+.+...
T Consensus 245 ~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~l--gi~~iIVVvNKiDl~~~~~ 322 (611)
T 3izq_1 245 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL--GIHNLIIAMNKMDNVDWSQ 322 (611)
T ss_dssp CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTT--TCCEEEEEEECTTTTTTCH
T ss_pred ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHc--CCCeEEEEEecccccchhH
Confidence 99999999999999999999999999999999998642 10 01111222222221 2356999999999987321
Q ss_pred --HhHHHhhh----CCCcCCCCceEEEEeccccCCCHHHH
Q 029446 136 --PMEVCEGL----GLFDLKNRKWHIQGTCALKGDGLYEG 169 (193)
Q Consensus 136 --~~~~~~~~----~~~~~~~~~~~~~~~Sa~~~~gi~~~ 169 (193)
.+++...+ ........+++++++||++|.|+.++
T Consensus 323 ~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 323 QRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred HHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 11122111 11111223568999999999999876
No 166
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.86 E-value=3.8e-21 Score=144.52 Aligned_cols=158 Identities=18% Similarity=0.175 Sum_probs=103.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-------ccccc-----------------c---ee---------------
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHIGEVLS-------TVPTI-----------------G---FN--------------- 52 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~~-------~~~t~-----------------~---~~--------------- 52 (193)
...++|+|+|.+|+|||||+|+|++..+.. ..|+. | .+
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i 103 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 103 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHh
Confidence 456899999999999999999999987631 11210 0 00
Q ss_pred ------------EEEEEE-cCEEEEEEecCCCC-------------CCHHhHHhhhcCCCEEE-EEEECCChhhHHHHHH
Q 029446 53 ------------VEKVQY-KNVIFTVWDVGGQE-------------KLRPLWRHYFNNTDGLI-YVVDSLDRERIGKAKQ 105 (193)
Q Consensus 53 ------------~~~~~~-~~~~~~i~D~~g~~-------------~~~~~~~~~~~~~d~~i-~v~d~~~~~s~~~~~~ 105 (193)
...+.. ....+.+|||||.. .+......+++.++.++ +|+|+++..+......
T Consensus 104 ~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~ 183 (299)
T 2aka_B 104 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 183 (299)
T ss_dssp CSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHH
T ss_pred cccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHH
Confidence 001111 13689999999953 34556677888888777 6999987544443333
Q ss_pred HHHHHHcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHHHHHHHH
Q 029446 106 EFQAIIKDPFMLNSVILVFANKQDMKGAMT-PMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTL 177 (193)
Q Consensus 106 ~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~ 177 (193)
++..+ .. .+.|+++|+||+|+.+... ..+..+.. ....+....+++++||+++.|+++++++|.+..
T Consensus 184 ~~~~~-~~---~~~~~i~V~NK~Dl~~~~~~~~~~~~~~-~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~~ 251 (299)
T 2aka_B 184 IAKEV-DP---QGQRTIGVITKLDLMDEGTDARDVLENK-LLPLRRGYIGVVNRSQKDIDGKKDITAALAAER 251 (299)
T ss_dssp HHHHH-CT---TCSSEEEEEECGGGSCTTCCCHHHHTTC-SSCCTTCEEECCCCCCBCTTSCBCHHHHHHHHH
T ss_pred HHHHh-CC---CCCeEEEEEEccccCCCCchHHHHHhCC-cCcCCCCcEEEECCChhhccccccHHHHHHHHH
Confidence 44443 22 4789999999999986533 22222211 011111234799999999999999999988743
No 167
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.86 E-value=5.2e-22 Score=144.84 Aligned_cols=168 Identities=14% Similarity=0.064 Sum_probs=100.9
Q ss_pred hcCCCccEEEEEcCCCCCHHHHHHHHhcCCcccc-----ccccceeEEEEEEcCEEEEEEecCCCC-----------CCH
Q 029446 12 FFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLST-----VPTIGFNVEKVQYKNVIFTVWDVGGQE-----------KLR 75 (193)
Q Consensus 12 ~~~~~~~~v~v~G~~~~GKssli~~l~~~~~~~~-----~~t~~~~~~~~~~~~~~~~i~D~~g~~-----------~~~ 75 (193)
......++|+++|.+|+|||||+|++++..+... ..|.......+.+.+..+.+|||||.. .+.
T Consensus 24 ~~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~ 103 (239)
T 3lxx_A 24 EPRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEII 103 (239)
T ss_dssp ----CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHHH
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHHH
Confidence 3445779999999999999999999999876532 234444455677788999999999943 334
Q ss_pred HhHHhhhcCCCEEEEEEECCChhhHH-HHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhC---CCcCCCC
Q 029446 76 PLWRHYFNNTDGLIYVVDSLDRERIG-KAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLG---LFDLKNR 151 (193)
Q Consensus 76 ~~~~~~~~~~d~~i~v~d~~~~~s~~-~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~---~~~~~~~ 151 (193)
..+..+++++|++++|+|+++....+ ....++....... ...|+++|+||+|+......++...... ....+.+
T Consensus 104 ~~~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~--~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~ 181 (239)
T 3lxx_A 104 RCILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGER--ARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIF 181 (239)
T ss_dssp HHHHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHH--HGGGEEEEEECGGGC------------CHHHHHHHHHH
T ss_pred HHHHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhh--ccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHc
Confidence 44455567889999999997543321 1122222222111 2458999999999876533221110000 0001222
Q ss_pred ceEEEEecccc-----CCCHHHHHHHHHHHHHhhh
Q 029446 152 KWHIQGTCALK-----GDGLYEGLDWLASTLKEMR 181 (193)
Q Consensus 152 ~~~~~~~Sa~~-----~~gi~~~~~~l~~~~~~~~ 181 (193)
+..++.+++.. ..++.++++.+.+.+.+..
T Consensus 182 ~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~~~ 216 (239)
T 3lxx_A 182 GDRYCALNNKATGAEQEAQRAQLLGLIQRVVRENK 216 (239)
T ss_dssp SSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred CCEEEEEECCCCccccHHHHHHHHHHHHHHHHHcC
Confidence 33466666553 3689999999988886543
No 168
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.85 E-value=5.7e-23 Score=163.06 Aligned_cols=157 Identities=15% Similarity=0.153 Sum_probs=90.5
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhc--CCcc--------------------------------ccccccceeEEEEEE
Q 029446 13 FGNSEMRVVMLGLDAAGKTTILYKLHI--GEVL--------------------------------STVPTIGFNVEKVQY 58 (193)
Q Consensus 13 ~~~~~~~v~v~G~~~~GKssli~~l~~--~~~~--------------------------------~~~~t~~~~~~~~~~ 58 (193)
.....++|+++|+.++|||||+++|+. +.+. ....|.+..+..+..
T Consensus 39 ~~k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~ 118 (467)
T 1r5b_A 39 YGKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFET 118 (467)
T ss_dssp SCCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEEC
T ss_pred cCCCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEec
Confidence 446679999999999999999999964 2111 113444555555666
Q ss_pred cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCChh---hHHHHHHHHHHHHcCCCCCCCe-EEEEEeCCCCCCCC
Q 029446 59 KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE---RIGKAKQEFQAIIKDPFMLNSV-ILVFANKQDMKGAM 134 (193)
Q Consensus 59 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~ 134 (193)
....+.+|||||+++|...+..++..+|++|+|+|+++.. +|+...++...+... ...+.| +|+|+||+|+.+..
T Consensus 119 ~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~-~~~~vp~iivviNK~Dl~~~~ 197 (467)
T 1r5b_A 119 EHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLA-RTQGINHLVVVINKMDEPSVQ 197 (467)
T ss_dssp SSEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHH-HHTTCSSEEEEEECTTSTTCS
T ss_pred CCeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHH-HHcCCCEEEEEEECccCCCcc
Confidence 7889999999999999999988899999999999998752 222111111111110 113566 99999999996522
Q ss_pred -CH---h----HHHhhhCCC-cCC-CCceEEEEeccccCCCHHHHH
Q 029446 135 -TP---M----EVCEGLGLF-DLK-NRKWHIQGTCALKGDGLYEGL 170 (193)
Q Consensus 135 -~~---~----~~~~~~~~~-~~~-~~~~~~~~~Sa~~~~gi~~~~ 170 (193)
+. + ++.+.+... .+. ..+++++++||++|.|+++++
T Consensus 198 ~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 198 WSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred ccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 11 1 122211100 011 125789999999999998754
No 169
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.85 E-value=3.9e-21 Score=152.17 Aligned_cols=151 Identities=19% Similarity=0.133 Sum_probs=103.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcC--Ccc--------------------------------ccccccceeEEEEEEcC
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHIG--EVL--------------------------------STVPTIGFNVEKVQYKN 60 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~~--~~~--------------------------------~~~~t~~~~~~~~~~~~ 60 (193)
...++|+++|++++|||||+++|++. .+. ....|....+..+....
T Consensus 5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~ 84 (458)
T 1f60_A 5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (458)
T ss_dssp CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS
T ss_pred CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCC
Confidence 45689999999999999999999863 111 02345555666677788
Q ss_pred EEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCChh---hHH---HHHHHHHHHHcCCCCCCCe-EEEEEeCCCCCCC
Q 029446 61 VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE---RIG---KAKQEFQAIIKDPFMLNSV-ILVFANKQDMKGA 133 (193)
Q Consensus 61 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~ 133 (193)
..+.+|||||+++|......++..+|++++|+|+++.. +|+ .....+... .. .+.| +|+|+||+|+.+.
T Consensus 85 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~-~~---~~v~~iivviNK~Dl~~~ 160 (458)
T 1f60_A 85 YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLA-FT---LGVRQLIVAVNKMDSVKW 160 (458)
T ss_dssp EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHH-HH---TTCCEEEEEEECGGGGTT
T ss_pred ceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHH-HH---cCCCeEEEEEEccccccC
Confidence 99999999999999999999999999999999998652 221 112222222 21 3454 8999999999842
Q ss_pred CC--HhHHHhhh----CCCcCCCCceEEEEeccccCCCHHHH
Q 029446 134 MT--PMEVCEGL----GLFDLKNRKWHIQGTCALKGDGLYEG 169 (193)
Q Consensus 134 ~~--~~~~~~~~----~~~~~~~~~~~~~~~Sa~~~~gi~~~ 169 (193)
.. .+++.+++ ....+...+++++++||++|+|+.++
T Consensus 161 ~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 161 DESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred CHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence 11 11121111 11111112468999999999998754
No 170
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.84 E-value=2.7e-20 Score=142.80 Aligned_cols=136 Identities=24% Similarity=0.338 Sum_probs=103.5
Q ss_pred ccccceeEEEEEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCC----------hhhHHHHHHHHHHHHcCCC
Q 029446 46 VPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD----------RERIGKAKQEFQAIIKDPF 115 (193)
Q Consensus 46 ~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~ 115 (193)
.+|+|+....+..+.+.+.+|||+|++.++..|..++++++++|+|+|+++ ..++.+...|+..+.....
T Consensus 186 ~~T~Gi~~~~~~~~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~ 265 (362)
T 1zcb_A 186 RPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRV 265 (362)
T ss_dssp CCCSSEEEEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGG
T ss_pred CCccceEEEEeeeCCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchh
Confidence 467888888888899999999999999999999999999999999999998 7899999999999987655
Q ss_pred CCCCeEEEEEeCCCCCCC------------------CCHhHHHhhh-----CCCcCC-CCceEEEEeccccCCCHHHHHH
Q 029446 116 MLNSVILVFANKQDMKGA------------------MTPMEVCEGL-----GLFDLK-NRKWHIQGTCALKGDGLYEGLD 171 (193)
Q Consensus 116 ~~~~p~ivv~nK~Dl~~~------------------~~~~~~~~~~-----~~~~~~-~~~~~~~~~Sa~~~~gi~~~~~ 171 (193)
..+.|+|+++||+|+..+ ...++..... .+.... ...+.+++|||++++||+++|+
T Consensus 266 ~~~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~ 345 (362)
T 1zcb_A 266 FSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFR 345 (362)
T ss_dssp GTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHH
T ss_pred hCCCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHH
Confidence 678999999999998621 2333333211 111111 4567899999999999999999
Q ss_pred HHHHHHHhhh
Q 029446 172 WLASTLKEMR 181 (193)
Q Consensus 172 ~l~~~~~~~~ 181 (193)
++.+.+.+..
T Consensus 346 ~v~~~i~~~~ 355 (362)
T 1zcb_A 346 DVKDTILHDN 355 (362)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999887654
No 171
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.84 E-value=6.8e-20 Score=147.07 Aligned_cols=115 Identities=19% Similarity=0.202 Sum_probs=84.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCC--cc----------------c-------cccccceeEEEEEEcCEEEEEEecC
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHIGE--VL----------------S-------TVPTIGFNVEKVQYKNVIFTVWDVG 69 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~~~--~~----------------~-------~~~t~~~~~~~~~~~~~~~~i~D~~ 69 (193)
.+..+|+++|++|+|||||+++|+... +. + ...|.......+.+....+.+||||
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTP 90 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTP 90 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCC
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECC
Confidence 467899999999999999999998631 10 0 0112223344567788999999999
Q ss_pred CCCCCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC
Q 029446 70 GQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM 134 (193)
Q Consensus 70 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~ 134 (193)
|+.+|...+..++..+|++++|+|+++....+. ...+... .. .+.|+++|+||+|+....
T Consensus 91 G~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t-~~~~~~~-~~---~~ipiivviNK~Dl~~~~ 150 (529)
T 2h5e_A 91 GHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRT-RKLMEVT-RL---RDTPILTFMNKLDRDIRD 150 (529)
T ss_dssp CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHH-HHHHHHH-TT---TTCCEEEEEECTTSCCSC
T ss_pred CChhHHHHHHHHHHHCCEEEEEEeCCccchHHH-HHHHHHH-HH---cCCCEEEEEcCcCCcccc
Confidence 999999888889999999999999987543222 2223322 22 578999999999997653
No 172
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.84 E-value=1.2e-22 Score=164.96 Aligned_cols=163 Identities=19% Similarity=0.170 Sum_probs=90.2
Q ss_pred hcCCCccEEEEEcCCCCCHHHHHHHHhcCCcc----------------------------------ccccccceeEEEEE
Q 029446 12 FFGNSEMRVVMLGLDAAGKTTILYKLHIGEVL----------------------------------STVPTIGFNVEKVQ 57 (193)
Q Consensus 12 ~~~~~~~~v~v~G~~~~GKssli~~l~~~~~~----------------------------------~~~~t~~~~~~~~~ 57 (193)
......++|+++|++++|||||+++|+..... ..+.|.......+.
T Consensus 172 ~~~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~ 251 (592)
T 3mca_A 172 SNPKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFE 251 (592)
T ss_dssp SCCCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-----------------------------------------------
T ss_pred ccCCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEE
Confidence 34456789999999999999999999642100 01223334444455
Q ss_pred EcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCChh---hH--HHHHHHHHHHHcCCCCCCCe-EEEEEeCCCCC
Q 029446 58 YKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE---RI--GKAKQEFQAIIKDPFMLNSV-ILVFANKQDMK 131 (193)
Q Consensus 58 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~--~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~ 131 (193)
.....+.+|||||+.+|......++..+|++|+|+|+++.. ++ ......+..+... .+.| +|+|+||+|+.
T Consensus 252 ~~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~---lgip~iIvviNKiDl~ 328 (592)
T 3mca_A 252 SDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA---LGISEIVVSVNKLDLM 328 (592)
T ss_dssp -------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH---SSCCCEEEEEECGGGG
T ss_pred eCCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH---cCCCeEEEEEeccccc
Confidence 56789999999999999988888889999999999998532 11 1111111112221 2454 89999999998
Q ss_pred CCCC--H----hHHHhhh-CCCcCCCCceEEEEeccccCCCHH--------------HHHHHHHHHH
Q 029446 132 GAMT--P----MEVCEGL-GLFDLKNRKWHIQGTCALKGDGLY--------------EGLDWLASTL 177 (193)
Q Consensus 132 ~~~~--~----~~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~--------------~~~~~l~~~~ 177 (193)
+... . .++...+ ....+...+++++++||++|.|+. .+++.|...+
T Consensus 329 ~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~ 395 (592)
T 3mca_A 329 SWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLV 395 (592)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSC
T ss_pred cccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHhhc
Confidence 6321 1 2222322 222223346789999999999998 6777776544
No 173
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.84 E-value=9.4e-20 Score=150.55 Aligned_cols=115 Identities=22% Similarity=0.136 Sum_probs=88.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcC--Cc------------c-------ccccccceeEEEEEEcCEEEEEEecCCCCC
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHIG--EV------------L-------STVPTIGFNVEKVQYKNVIFTVWDVGGQEK 73 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~~--~~------------~-------~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~ 73 (193)
.+..+|+|+|++|+|||||+++|... .+ . ...+|.......+.+....+.+|||||+..
T Consensus 10 ~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 89 (691)
T 1dar_A 10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVD 89 (691)
T ss_dssp GGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTT
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccc
Confidence 56789999999999999999999831 11 0 123455555667777889999999999999
Q ss_pred CHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC
Q 029446 74 LRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM 134 (193)
Q Consensus 74 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~ 134 (193)
|...+..+++.+|++++|+|+++..+.+....|. .+.. .+.|+++|+||+|+....
T Consensus 90 f~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~-~~~~----~~~p~ivviNKiD~~~~~ 145 (691)
T 1dar_A 90 FTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWR-QAEK----YKVPRIAFANKMDKTGAD 145 (691)
T ss_dssp CHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHH-HHHH----TTCCEEEEEECTTSTTCC
T ss_pred hHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHH-HHHH----cCCCEEEEEECCCcccCC
Confidence 9999999999999999999999877766654443 3333 478999999999998653
No 174
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.83 E-value=1.6e-21 Score=150.14 Aligned_cols=162 Identities=15% Similarity=0.201 Sum_probs=86.8
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhcCCcc-c-c--------ccccceeEEEEEE--c--CEEEEEEecCCC-------
Q 029446 13 FGNSEMRVVMLGLDAAGKTTILYKLHIGEVL-S-T--------VPTIGFNVEKVQY--K--NVIFTVWDVGGQ------- 71 (193)
Q Consensus 13 ~~~~~~~v~v~G~~~~GKssli~~l~~~~~~-~-~--------~~t~~~~~~~~~~--~--~~~~~i~D~~g~------- 71 (193)
.....++|+|+|++|+|||||+|+|++.... . + .+|.+.....+.. . ...+.+|||||+
T Consensus 33 ~~~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~ 112 (361)
T 2qag_A 33 KKGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCR 112 (361)
T ss_dssp HHCCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-----------
T ss_pred cCCCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccH
Confidence 3456799999999999999999998765432 1 1 1344444333222 2 347999999998
Q ss_pred CCCHHhHH-------hhhcCC-------------CEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCC
Q 029446 72 EKLRPLWR-------HYFNNT-------------DGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMK 131 (193)
Q Consensus 72 ~~~~~~~~-------~~~~~~-------------d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 131 (193)
+.+..++. .+++++ ++++|+++.. ..++..+...+...+. .+.|+|+|+||+|+.
T Consensus 113 e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~-~~~l~~~d~~~~~~l~----~~~piIlV~NK~Dl~ 187 (361)
T 2qag_A 113 DCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDVAFMKAIH----NKVNIVPVIAKADTL 187 (361)
T ss_dssp ---CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS-SSSCCHHHHHHHHHTC----S-SCEEEEEECCSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC-CCCcchhHHHHHHHhc----cCCCEEEEEECCCCC
Confidence 66665554 555433 3566666542 3344554433333332 578999999999988
Q ss_pred CCCCHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHHHHHHHHHhhh
Q 029446 132 GAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEMR 181 (193)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~ 181 (193)
.........+ .....++..+++++++||+++.| ++.+..+.+.+.+..
T Consensus 188 ~~~ev~~~k~-~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~~i 235 (361)
T 2qag_A 188 TLKERERLKK-RILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKASI 235 (361)
T ss_dssp CHHHHHHHHH-HHHHHTTCC-CCSCCCC----------CHHHHHHHHHTC
T ss_pred CHHHHHHHHH-HHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHhcC
Confidence 6422221111 11122345677899999999998 888888888776554
No 175
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.82 E-value=2.9e-20 Score=157.79 Aligned_cols=160 Identities=22% Similarity=0.173 Sum_probs=106.5
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCC-------ccc--------ccccccee----EEEEEEcCEEEEEEecCCCCCC
Q 029446 14 GNSEMRVVMLGLDAAGKTTILYKLHIGE-------VLS--------TVPTIGFN----VEKVQYKNVIFTVWDVGGQEKL 74 (193)
Q Consensus 14 ~~~~~~v~v~G~~~~GKssli~~l~~~~-------~~~--------~~~t~~~~----~~~~~~~~~~~~i~D~~g~~~~ 74 (193)
....++|+++|++++|||||+++|.+.. +.. ...+.|++ ...+......+.+|||||+++|
T Consensus 293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF 372 (1289)
T 3avx_A 293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADY 372 (1289)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHH
T ss_pred cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHH
Confidence 3456899999999999999999998631 100 01223332 2345556789999999999999
Q ss_pred HHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCe-EEEEEeCCCCCCCCCH-----hHHHhhhCCCcC
Q 029446 75 RPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSV-ILVFANKQDMKGAMTP-----MEVCEGLGLFDL 148 (193)
Q Consensus 75 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~-----~~~~~~~~~~~~ 148 (193)
......++..+|++|+|+|+++....+. ..++..+.. .++| +|+|+||+|+.+.... +++.+.+.....
T Consensus 373 ~~~mi~gas~AD~aILVVDAtdGv~~QT-rEhL~ll~~----lgIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~ 447 (1289)
T 3avx_A 373 VKNMITGAAQMDGAILVVAATDGPMPQT-REHILLGRQ----VGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDF 447 (1289)
T ss_dssp HHHHHHTSCCCSEEEEEEETTTCSCTTH-HHHHHHHHH----HTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhhCCEEEEEEcCCccCcHHH-HHHHHHHHH----cCCCeEEEEEeecccccchhhHHHHHHHHHHHHHhccc
Confidence 9999899999999999999987533222 233333322 3577 7899999999863211 112222211111
Q ss_pred CCCceEEEEeccccC--------CCHHHHHHHHHHHHH
Q 029446 149 KNRKWHIQGTCALKG--------DGLYEGLDWLASTLK 178 (193)
Q Consensus 149 ~~~~~~~~~~Sa~~~--------~gi~~~~~~l~~~~~ 178 (193)
....++++++||++| .|++++++.|.+.+.
T Consensus 448 ~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip 485 (1289)
T 3avx_A 448 PGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIP 485 (1289)
T ss_dssp CTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred cccceeEEEEEeccCCCCCccccccchhhHhHHhhhcC
Confidence 223568999999999 468888888887654
No 176
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.82 E-value=4.9e-20 Score=131.62 Aligned_cols=159 Identities=19% Similarity=0.161 Sum_probs=98.5
Q ss_pred hcCCCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE--EEEEcCEEEEEEecCCCCC----------CHHhH
Q 029446 12 FFGNSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE--KVQYKNVIFTVWDVGGQEK----------LRPLW 78 (193)
Q Consensus 12 ~~~~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~~~~~~~i~D~~g~~~----------~~~~~ 78 (193)
.......+|+++|++|||||||+|++.+..+. .+.++.|.+.. .+.... .+.+||+||... ++...
T Consensus 21 ~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 99 (210)
T 1pui_A 21 LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD-GKRLVDLPGYGYAEVPEEMKRKWQRAL 99 (210)
T ss_dssp SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET-TEEEEECCCCC------CCHHHHHHHH
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC-CEEEEECcCCcccccCHHHHHHHHHHH
Confidence 44556789999999999999999999987732 33445444322 233333 678999999743 23333
Q ss_pred Hhhh---cCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH----hHHHhhhCCCcCCCC
Q 029446 79 RHYF---NNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP----MEVCEGLGLFDLKNR 151 (193)
Q Consensus 79 ~~~~---~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~----~~~~~~~~~~~~~~~ 151 (193)
..++ ..++++++++|++++.+.... .+..++.. .+.|+++++||+|+...... ......+.. ...
T Consensus 100 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~--~~~~~~~~---~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~---~~~ 171 (210)
T 1pui_A 100 GEYLEKRQSLQGLVVLMDIRHPLKDLDQ--QMIEWAVD---SNIAVLVLLTKADKLASGARKAQLNMVREAVLA---FNG 171 (210)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHH--HHHHHHHH---TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGG---GCS
T ss_pred HHHHHhhhcccEEEEEEECCCCCchhHH--HHHHHHHH---cCCCeEEEEecccCCCchhHHHHHHHHHHHHHh---cCC
Confidence 3444 468999999999876554321 11122221 46889999999998764211 111121111 123
Q ss_pred ceEEEEeccccCCCHHHHHHHHHHHHHh
Q 029446 152 KWHIQGTCALKGDGLYEGLDWLASTLKE 179 (193)
Q Consensus 152 ~~~~~~~Sa~~~~gi~~~~~~l~~~~~~ 179 (193)
.+.++++||+++.|++++++.|.+.+.+
T Consensus 172 ~~~~~~~Sal~~~~~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 172 DVQVETFSSLKKQGVDKLRQKLDTWFSE 199 (210)
T ss_dssp CEEEEECBTTTTBSHHHHHHHHHHHHC-
T ss_pred CCceEEEeecCCCCHHHHHHHHHHHHhh
Confidence 4578999999999999999999887643
No 177
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.82 E-value=7.7e-19 Score=145.17 Aligned_cols=116 Identities=18% Similarity=0.173 Sum_probs=88.9
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhc--CCcc------------c-------cccccceeEEEEEEcCEEEEEEecCCC
Q 029446 13 FGNSEMRVVMLGLDAAGKTTILYKLHI--GEVL------------S-------TVPTIGFNVEKVQYKNVIFTVWDVGGQ 71 (193)
Q Consensus 13 ~~~~~~~v~v~G~~~~GKssli~~l~~--~~~~------------~-------~~~t~~~~~~~~~~~~~~~~i~D~~g~ 71 (193)
...+..+|+++|++|+|||||+++|+. +.+. + ...|.......+.+....+.+|||||+
T Consensus 6 ~~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 85 (693)
T 2xex_A 6 SLEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGH 85 (693)
T ss_dssp CSTTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCC
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCC
Confidence 345678999999999999999999984 2211 1 123444445567778899999999999
Q ss_pred CCCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 029446 72 EKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA 133 (193)
Q Consensus 72 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 133 (193)
.++...+..+++.+|++++|+|+++..+.+.... |..+.. .+.|+++|+||+|+...
T Consensus 86 ~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~-~~~~~~----~~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 86 VDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETV-WRQATT----YGVPRIVFVNKMDKLGA 142 (693)
T ss_dssp SSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHH-HHHHHH----TTCCEEEEEECTTSTTC
T ss_pred cchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHH-HHHHHH----cCCCEEEEEECCCcccc
Confidence 9999999999999999999999998776665543 333433 47899999999999875
No 178
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.81 E-value=5.7e-19 Score=145.38 Aligned_cols=113 Identities=18% Similarity=0.190 Sum_probs=85.6
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCcc--------------cc-------ccccceeEEEEEEcCEEEEEEecCCCC
Q 029446 14 GNSEMRVVMLGLDAAGKTTILYKLHIGEVL--------------ST-------VPTIGFNVEKVQYKNVIFTVWDVGGQE 72 (193)
Q Consensus 14 ~~~~~~v~v~G~~~~GKssli~~l~~~~~~--------------~~-------~~t~~~~~~~~~~~~~~~~i~D~~g~~ 72 (193)
..+..+|+++|+.|+|||||+++|.+.... ++ ..+.......+.+....+.+|||||+.
T Consensus 6 ~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~ 85 (665)
T 2dy1_A 6 GAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYG 85 (665)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSG
T ss_pred cCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCcc
Confidence 356679999999999999999999843211 10 123334445566678999999999999
Q ss_pred CCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCC
Q 029446 73 KLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMK 131 (193)
Q Consensus 73 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 131 (193)
++...+..+++.+|++++|+|+++....+.. .++..+.. .+.|+|+|+||+|+.
T Consensus 86 ~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~-~~~~~~~~----~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 86 DFVGEIRGALEAADAALVAVSAEAGVQVGTE-RAWTVAER----LGLPRMVVVTKLDKG 139 (665)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCSCHHHH-HHHHHHHH----TTCCEEEEEECGGGC
T ss_pred chHHHHHHHHhhcCcEEEEEcCCcccchhHH-HHHHHHHH----ccCCEEEEecCCchh
Confidence 9999999999999999999999765443332 44444433 478999999999987
No 179
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.81 E-value=1.4e-19 Score=139.98 Aligned_cols=135 Identities=24% Similarity=0.348 Sum_probs=107.4
Q ss_pred cccceeEEEEEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCC----------hhhHHHHHHHHHHHHcCCCC
Q 029446 47 PTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD----------RERIGKAKQEFQAIIKDPFM 116 (193)
Q Consensus 47 ~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~ 116 (193)
+|+|+....+..+.+.+.+|||+|++.++..|..++++++++|+|+|+++ ..+|++...|+..+......
T Consensus 203 ~TiGi~~~~~~~~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~ 282 (402)
T 1azs_C 203 LTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWL 282 (402)
T ss_dssp CCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTC
T ss_pred ceeeeEEEEeecCCccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccC
Confidence 57788888888889999999999999999999999999999999999998 89999999999999876666
Q ss_pred CCCeEEEEEeCCCCCCC-----C------------------------C--HhHHHhhh-----CCC----cCCCCceEEE
Q 029446 117 LNSVILVFANKQDMKGA-----M------------------------T--PMEVCEGL-----GLF----DLKNRKWHIQ 156 (193)
Q Consensus 117 ~~~p~ivv~nK~Dl~~~-----~------------------------~--~~~~~~~~-----~~~----~~~~~~~~~~ 156 (193)
.+.|+|+|+||+|+... . . ..+....+ ... ......+.++
T Consensus 283 ~~~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~ 362 (402)
T 1azs_C 283 RTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPH 362 (402)
T ss_dssp SSCCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEE
T ss_pred CCCeEEEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEE
Confidence 78999999999997431 0 0 00111111 000 0012356789
Q ss_pred EeccccCCCHHHHHHHHHHHHHhhh
Q 029446 157 GTCALKGDGLYEGLDWLASTLKEMR 181 (193)
Q Consensus 157 ~~Sa~~~~gi~~~~~~l~~~~~~~~ 181 (193)
+|||++++||+++|+.+.+.+.+..
T Consensus 363 ~TSA~d~~nV~~vF~~v~~~I~~~~ 387 (402)
T 1azs_C 363 FTCAVDTENIRRVFNDCRDIIQRMH 387 (402)
T ss_dssp ECCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeecCcCHHHHHHHHHHHHHHHH
Confidence 9999999999999999998887554
No 180
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.81 E-value=8.4e-20 Score=150.92 Aligned_cols=162 Identities=19% Similarity=0.226 Sum_probs=108.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCcccc--ccccc-eeEE--------EEEE-------------------------
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHIGEVLST--VPTIG-FNVE--------KVQY------------------------- 58 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~~~--~~t~~-~~~~--------~~~~------------------------- 58 (193)
...++|+|+|.+|+|||||+|+|++...... .|++. ++.. +..+
T Consensus 67 ~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~ 146 (695)
T 2j69_A 67 QGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEA 146 (695)
T ss_dssp HCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHH
Confidence 4679999999999999999999998775422 23221 1000 1110
Q ss_pred ---------------------c----CEEEEEEecCCCCC---CHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHH
Q 029446 59 ---------------------K----NVIFTVWDVGGQEK---LRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAI 110 (193)
Q Consensus 59 ---------------------~----~~~~~i~D~~g~~~---~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~ 110 (193)
. ...+.+|||||... .......+++++|++++|+|++++.+......|...+
T Consensus 147 ~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l 226 (695)
T 2j69_A 147 KKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYI 226 (695)
T ss_dssp HHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHT
T ss_pred HHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHH
Confidence 0 03689999999443 4556678889999999999999887776664443333
Q ss_pred HcCCCCCCCeEEEEEeCCCCCCCC-----CHhH-------HHh----hhCCCcCC-----CCceEEEEeccc--------
Q 029446 111 IKDPFMLNSVILVFANKQDMKGAM-----TPME-------VCE----GLGLFDLK-----NRKWHIQGTCAL-------- 161 (193)
Q Consensus 111 ~~~~~~~~~p~ivv~nK~Dl~~~~-----~~~~-------~~~----~~~~~~~~-----~~~~~~~~~Sa~-------- 161 (193)
.. .+.|+++|+||+|+.... +.++ +.+ .+.. ... ....+++++||+
T Consensus 227 -~~---~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~-~~~~~g~~~~~~~v~~vSAk~al~~~~~ 301 (695)
T 2j69_A 227 -KG---RGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAE-YCTVEGQNIYDERVFELSSIQALRRRLK 301 (695)
T ss_dssp -TT---SCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGG-GGBSSSCBCGGGTEEECCHHHHHHHHHH
T ss_pred -Hh---hCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHH-hhcccccccCCCcEEEEeChHHHHhhcc
Confidence 22 367899999999986532 1101 111 1110 011 223469999999
Q ss_pred ------cCCCHHHHHHHHHHHHHhhh
Q 029446 162 ------KGDGLYEGLDWLASTLKEMR 181 (193)
Q Consensus 162 ------~~~gi~~~~~~l~~~~~~~~ 181 (193)
++.|++++++.|.+.+...+
T Consensus 302 ~~~~~~~~~Gi~~L~~~L~~~l~~~~ 327 (695)
T 2j69_A 302 NPQADLDGTGFPKFMDSLNTFLTRER 327 (695)
T ss_dssp CTTCCCTTSSHHHHHHHHHHHHHHTH
T ss_pred CchhhhhccCHHHHHHHHHHHHHHhH
Confidence 99999999999998776543
No 181
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.81 E-value=1.5e-19 Score=133.53 Aligned_cols=117 Identities=16% Similarity=0.127 Sum_probs=82.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCcccc----ccccceeEEEEEEcCEEEEEEecCCCCCCHHhHHhhhc-------
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHIGEVLST----VPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFN------- 83 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~~~----~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~------- 83 (193)
.+.++|+++|.+|+|||||+|+|++...... ..|.......+...+..+.+|||||+.++......+++
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~ 113 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFLV 113 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcccchHHHHHHHHHHHh
Confidence 4789999999999999999999999875322 22444555667778899999999998876544333332
Q ss_pred --CCCEEEEEEECCChhhHHHH-HHHHHHHHcCC-CCCCCeEEEEEeCCCCCC
Q 029446 84 --NTDGLIYVVDSLDRERIGKA-KQEFQAIIKDP-FMLNSVILVFANKQDMKG 132 (193)
Q Consensus 84 --~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~ 132 (193)
++|++++|++++... +... ..++..+.... .....|+++|+||+|+.+
T Consensus 114 ~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~ 165 (262)
T 3def_A 114 NRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSP 165 (262)
T ss_dssp TCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCC
T ss_pred cCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCC
Confidence 789999999987644 3332 23444433211 111248999999999864
No 182
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.80 E-value=5.4e-19 Score=133.79 Aligned_cols=160 Identities=19% Similarity=0.191 Sum_probs=98.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCcccc-------cccc-ceeE---------------------------------
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHIGEVLST-------VPTI-GFNV--------------------------------- 53 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~~~-------~~t~-~~~~--------------------------------- 53 (193)
...++|+|+|.+|+|||||+|+|++..+... .|+. ....
T Consensus 22 ~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (315)
T 1jwy_B 22 LDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREE 101 (315)
T ss_dssp TCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHH
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHH
Confidence 3568999999999999999999998876211 1100 0000
Q ss_pred -------------------EE---EEEcCEEEEEEecCCCCC-------------CHHhHHhhhcCCCEEEEEEECCChh
Q 029446 54 -------------------EK---VQYKNVIFTVWDVGGQEK-------------LRPLWRHYFNNTDGLIYVVDSLDRE 98 (193)
Q Consensus 54 -------------------~~---~~~~~~~~~i~D~~g~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~ 98 (193)
.. ......++.+|||||... +......+++++|++++|+|+.+..
T Consensus 102 i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~ 181 (315)
T 1jwy_B 102 IIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTD 181 (315)
T ss_dssp HHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSC
T ss_pred HHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcc
Confidence 00 111346799999999753 4556677889999999999974322
Q ss_pred -hHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCcCCCCceEEEEecccc---CCCHHHHHHHH
Q 029446 99 -RIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT-PMEVCEGLGLFDLKNRKWHIQGTCALK---GDGLYEGLDWL 173 (193)
Q Consensus 99 -s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~gi~~~~~~l 173 (193)
.-......+. .+.. .+.|+++|+||+|+.+... ..+..+.. .......-+++..+|+.+ +.|++++++.+
T Consensus 182 ~~~~~~~~i~~-~~~~---~~~~~i~v~NK~Dl~~~~~~~~~~~~~~-~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~ 256 (315)
T 1jwy_B 182 LANSDALQLAK-EVDP---EGKRTIGVITKLDLMDKGTDAMEVLTGR-VIPLTLGFIGVINRSQEDIIAKKSIRESLKSE 256 (315)
T ss_dssp STTCSHHHHHH-HHCS---SCSSEEEEEECTTSSCSSCCCHHHHTTS-SSCCTTCEEECCCCCHHHHSSSCCHHHHHHHH
T ss_pred hhhhHHHHHHH-HhCC---CCCcEEEEEcCcccCCcchHHHHHHhCC-CccCCCCeEEEecCChhhhccCCCHHHHHHHH
Confidence 1111112222 2222 4789999999999986543 12222210 001111223455566666 78999999999
Q ss_pred HHHHHh
Q 029446 174 ASTLKE 179 (193)
Q Consensus 174 ~~~~~~ 179 (193)
.+.+..
T Consensus 257 ~~~~~~ 262 (315)
T 1jwy_B 257 ILYFKN 262 (315)
T ss_dssp HHHHHT
T ss_pred HHHHhC
Confidence 888764
No 183
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.80 E-value=4.5e-21 Score=144.27 Aligned_cols=147 Identities=22% Similarity=0.126 Sum_probs=111.9
Q ss_pred HHHHHHhcCCcc--ccccccceeEEEEEE-cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCChh-hHHHHHHHH
Q 029446 32 TILYKLHIGEVL--STVPTIGFNVEKVQY-KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE-RIGKAKQEF 107 (193)
Q Consensus 32 sli~~l~~~~~~--~~~~t~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~ 107 (193)
+++.++..+.+. .+.||+|..+. ... .+..+++||+ +++++.+++.+++++|++++|+|++++. ++..+..|+
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~~~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l 108 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDETGSGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFL 108 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEE-EECCCSSSEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHH
T ss_pred cEEEEEEcccccccCCCCCCccEEE-EEEcCCCeEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHH
Confidence 688888888875 46789996554 332 2237999999 9999999999999999999999999987 688888888
Q ss_pred HHHHcCCCCCCCeEEEEEeCCCCCCCCC---HhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHHHHHHHHHhhhccC
Q 029446 108 QAIIKDPFMLNSVILVFANKQDMKGAMT---PMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEMRAAG 184 (193)
Q Consensus 108 ~~~~~~~~~~~~p~ivv~nK~Dl~~~~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~~~~ 184 (193)
..+.. .+.|+++|+||+|+.+... .++..+.+. .. +++++|||++|+|++++|+.+...+.. --|
T Consensus 109 ~~~~~----~~~piilv~NK~DL~~~~~v~~~~~~~~~~~-----~~-~~~~~~SAktg~gv~~lf~~l~geiv~--l~G 176 (301)
T 1u0l_A 109 VLAEK----NELETVMVINKMDLYDEDDLRKVRELEEIYS-----GL-YPIVKTSAKTGMGIEELKEYLKGKIST--MAG 176 (301)
T ss_dssp HHHHH----TTCEEEEEECCGGGCCHHHHHHHHHHHHHHT-----TT-SCEEECCTTTCTTHHHHHHHHSSSEEE--EEC
T ss_pred HHHHH----CCCCEEEEEeHHHcCCchhHHHHHHHHHHHh-----hh-CcEEEEECCCCcCHHHHHHHhcCCeEE--EEC
Confidence 76643 4789999999999976422 122233322 11 579999999999999999887654422 238
Q ss_pred CCCCCcCCC
Q 029446 185 YSSVGTSSF 193 (193)
Q Consensus 185 ~~~~~~~~~ 193 (193)
.+++|||++
T Consensus 177 ~sG~GKSTl 185 (301)
T 1u0l_A 177 LSGVGKSSL 185 (301)
T ss_dssp STTSSHHHH
T ss_pred CCCCcHHHH
Confidence 899999864
No 184
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.80 E-value=3.4e-18 Score=141.47 Aligned_cols=115 Identities=17% Similarity=0.078 Sum_probs=86.1
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcC--Ccc------------c-------cccccceeEEEEEEcC-------EEEEE
Q 029446 14 GNSEMRVVMLGLDAAGKTTILYKLHIG--EVL------------S-------TVPTIGFNVEKVQYKN-------VIFTV 65 (193)
Q Consensus 14 ~~~~~~v~v~G~~~~GKssli~~l~~~--~~~------------~-------~~~t~~~~~~~~~~~~-------~~~~i 65 (193)
..+..+|+|+|+.++|||||+++|... .+. + ...|.......+.+.. ..+.+
T Consensus 7 ~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~l 86 (704)
T 2rdo_7 7 IARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINI 86 (704)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEE
Confidence 356789999999999999999999742 111 1 1223333344555555 89999
Q ss_pred EecCCCCCCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 029446 66 WDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA 133 (193)
Q Consensus 66 ~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 133 (193)
|||||+.+|...+..+++.+|++|+|+|+++....+... .|..... .+.|+++|+||+|+...
T Consensus 87 iDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~-~~~~~~~----~~ip~ilviNKiD~~~~ 149 (704)
T 2rdo_7 87 IDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSET-VWRQANK----YKVPRIAFVNKMDRMGA 149 (704)
T ss_pred EeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHH-HHHHHHH----cCCCEEEEEeCCCcccc
Confidence 999999999999999999999999999999775544443 3333322 47899999999998764
No 185
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.80 E-value=6e-19 Score=137.41 Aligned_cols=159 Identities=20% Similarity=0.195 Sum_probs=111.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcc--cc-ccccceeEEEEEEcC-EEEEEEecCCCCCC-------HHhHHhhhcCCC
Q 029446 18 MRVVMLGLDAAGKTTILYKLHIGEVL--ST-VPTIGFNVEKVQYKN-VIFTVWDVGGQEKL-------RPLWRHYFNNTD 86 (193)
Q Consensus 18 ~~v~v~G~~~~GKssli~~l~~~~~~--~~-~~t~~~~~~~~~~~~-~~~~i~D~~g~~~~-------~~~~~~~~~~~d 86 (193)
..|+++|++|||||||++.+++.... .+ ..|...+...+.... ..+.+||+||..+. .......++.++
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~ 237 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTR 237 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhHHHHHHHHHHH
Confidence 46899999999999999999987532 22 244555566666654 78999999997432 111222346799
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHcCC-CCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCC
Q 029446 87 GLIYVVDSLDRERIGKAKQEFQAIIKDP-FMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDG 165 (193)
Q Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 165 (193)
.+++++|++ ...+..+..+..++.... .....|.++++||+|+......+++.+.+ +..+.+++.+||++++|
T Consensus 238 ~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~~~~~~l~~~l-----~~~g~~vi~iSA~~g~g 311 (416)
T 1udx_A 238 VLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADAL-----AREGLAVLPVSALTGAG 311 (416)
T ss_dssp EEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHHHHHHHHH-----HTTTSCEEECCTTTCTT
T ss_pred hhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhHHHHHHHHHHH-----HhcCCeEEEEECCCccC
Confidence 999999998 566667666666554421 12357899999999987652122222222 22345799999999999
Q ss_pred HHHHHHHHHHHHHhhhc
Q 029446 166 LYEGLDWLASTLKEMRA 182 (193)
Q Consensus 166 i~~~~~~l~~~~~~~~~ 182 (193)
+++++++|.+.+.+...
T Consensus 312 i~eL~~~i~~~l~~~~~ 328 (416)
T 1udx_A 312 LPALKEALHALVRSTPP 328 (416)
T ss_dssp HHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHHHhccc
Confidence 99999999999976543
No 186
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.78 E-value=4.3e-19 Score=136.74 Aligned_cols=153 Identities=17% Similarity=0.183 Sum_probs=99.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccccc---ccccee-------------E--------------------------
Q 029446 16 SEMRVVMLGLDAAGKTTILYKLHIGEVLSTV---PTIGFN-------------V-------------------------- 53 (193)
Q Consensus 16 ~~~~v~v~G~~~~GKssli~~l~~~~~~~~~---~t~~~~-------------~-------------------------- 53 (193)
.-+.|+|+|++|||||||+|++++..+.... .|.... +
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD 112 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence 3459999999999999999999997752111 110000 0
Q ss_pred -------------EEEE---EcCEEEEEEecCCCCCC-------------HHhHHhhhcCCCEEEEEEECCChhhH-HHH
Q 029446 54 -------------EKVQ---YKNVIFTVWDVGGQEKL-------------RPLWRHYFNNTDGLIYVVDSLDRERI-GKA 103 (193)
Q Consensus 54 -------------~~~~---~~~~~~~i~D~~g~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~-~~~ 103 (193)
..+. .....+.+|||||...+ ......+++++|++++|+|..+.... ...
T Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~ 192 (360)
T 3t34_A 113 RETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDA 192 (360)
T ss_dssp HTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHH
T ss_pred HhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHH
Confidence 0111 12456899999997776 66778889999999999987543322 222
Q ss_pred HHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHHHHHHH
Q 029446 104 KQEFQAIIKDPFMLNSVILVFANKQDMKGAMT-PMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAST 176 (193)
Q Consensus 104 ~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~ 176 (193)
..++..+ ...+.|+|+|+||+|+.+... ..+..+. .....+.+|++++++++.++++.++.....
T Consensus 193 ~~l~~~~----~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~----~~~~~~~~~~~v~~~s~~~i~~~~~~~~~~ 258 (360)
T 3t34_A 193 IKISREV----DPSGDRTFGVLTKIDLMDKGTDAVEILEG----RSFKLKYPWVGVVNRSQADINKNVDMIAAR 258 (360)
T ss_dssp HHHHHHS----CTTCTTEEEEEECGGGCCTTCCSHHHHTT----SSSCCSSCCEEECCCCHHHHHTTCCHHHHH
T ss_pred HHHHHHh----cccCCCEEEEEeCCccCCCcccHHHHHcC----ccccccCCeEEEEECChHHhccCCCHHHHH
Confidence 2222222 225779999999999986532 2222222 123455689999999988887765554433
No 187
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.76 E-value=3.4e-18 Score=126.81 Aligned_cols=118 Identities=14% Similarity=0.089 Sum_probs=79.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccccc----cccceeEEEEEEcCEEEEEEecCCCCCCHHhH-------Hhh--
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHIGEVLSTV----PTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLW-------RHY-- 81 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~~~~----~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~-------~~~-- 81 (193)
...++|+++|.+|+|||||+|+|++..+.... .|.......+...+..+.+|||||..++.... ..+
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~ 116 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLL 116 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHhh
Confidence 46899999999999999999999988764222 22233344556678999999999987654211 111
Q ss_pred hcCCCEEEEEEECCChhhHHHH-HHHHHHHHcCCC-CCCCeEEEEEeCCCCCCC
Q 029446 82 FNNTDGLIYVVDSLDRERIGKA-KQEFQAIIKDPF-MLNSVILVFANKQDMKGA 133 (193)
Q Consensus 82 ~~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~ 133 (193)
.+.+|++++|+|++.. ++... ..++..+..... ....|+++|+||+|+.++
T Consensus 117 ~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~ 169 (270)
T 1h65_A 117 DKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPP 169 (270)
T ss_dssp TCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCG
T ss_pred cCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCc
Confidence 2369999999998653 23332 244444432211 112689999999998764
No 188
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.75 E-value=1.6e-18 Score=133.15 Aligned_cols=155 Identities=17% Similarity=0.151 Sum_probs=95.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-c------ccc----------------------c----------------
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHIGEVLS-T------VPT----------------------I---------------- 49 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~~-~------~~t----------------------~---------------- 49 (193)
...++|+|+|.+|+|||||+|+|++..+.. . .|+ .
T Consensus 29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i 108 (353)
T 2x2e_A 29 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 108 (353)
T ss_dssp CCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHh
Confidence 356799999999999999999999987631 1 122 0
Q ss_pred -----cee----EEEEEE-cCEEEEEEecCCCC-------------CCHHhHHhhhcCCCEEE-EEEECCChhhHHHHHH
Q 029446 50 -----GFN----VEKVQY-KNVIFTVWDVGGQE-------------KLRPLWRHYFNNTDGLI-YVVDSLDRERIGKAKQ 105 (193)
Q Consensus 50 -----~~~----~~~~~~-~~~~~~i~D~~g~~-------------~~~~~~~~~~~~~d~~i-~v~d~~~~~s~~~~~~ 105 (193)
++. ...+.. ....+.+|||||.. .+......++.+++.++ +++|++....-.....
T Consensus 109 ~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~ 188 (353)
T 2x2e_A 109 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 188 (353)
T ss_dssp HTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHH
T ss_pred cccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHH
Confidence 000 001111 24679999999953 23445666776665554 4666654322122222
Q ss_pred HHHHHHcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCcCCCCc-eEEEEeccccCCCHHHHHHHHHH
Q 029446 106 EFQAIIKDPFMLNSVILVFANKQDMKGAMT-PMEVCEGLGLFDLKNRK-WHIQGTCALKGDGLYEGLDWLAS 175 (193)
Q Consensus 106 ~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~~~~~l~~ 175 (193)
++..+ . ..+.|+|+|+||+|+.+... ..+..+.. ......+ .+++.+||+++.|++++++++.+
T Consensus 189 i~~~~-~---~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~--~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 189 VAKEV-D---PQGQRTIGVITKLDLMDEGTDARDVLENK--LLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp HHHHH-C---TTCTTEEEEEECGGGSCTTCCCHHHHTTC--SSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred HHHHh-C---cCCCceEEEeccccccCcchhHHHHHhCC--cccccCCceEEEeCCcccccccccHHHHHHH
Confidence 33333 2 25789999999999986533 22222211 1111223 46899999999999999998876
No 189
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.74 E-value=4.5e-18 Score=130.75 Aligned_cols=155 Identities=17% Similarity=0.142 Sum_probs=98.5
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCC------cc--cccccc---------------------ceeEE----------
Q 029446 14 GNSEMRVVMLGLDAAGKTTILYKLHIGE------VL--STVPTI---------------------GFNVE---------- 54 (193)
Q Consensus 14 ~~~~~~v~v~G~~~~GKssli~~l~~~~------~~--~~~~t~---------------------~~~~~---------- 54 (193)
....+.|+++|.+|+|||||+++|.... .. ...+.. +....
T Consensus 76 ~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i~~~~~~~~~~~ 155 (355)
T 3p32_A 76 SGNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTLGG 155 (355)
T ss_dssp CCCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------CHHHHTCTTEEEECCC--CCHHH
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhhHHhhccCCCeeEEECCCCccccc
Confidence 4567899999999999999999986421 00 000000 00000
Q ss_pred ----------EEEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEE
Q 029446 55 ----------KVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVF 124 (193)
Q Consensus 55 ----------~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv 124 (193)
.+...+..+.+|||||... ........+|++++|+|+...+.++.+. ......|.++|
T Consensus 156 ~~~~t~d~i~~~~~~~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~---------~~~~~~p~ivV 223 (355)
T 3p32_A 156 VTRATRETVVLLEAAGFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIK---------KGVLELADIVV 223 (355)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCC---------TTSGGGCSEEE
T ss_pred hhHHHHHHHHHHhhCCCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHH---------HhHhhcCCEEE
Confidence 0012467899999999433 2333458899999999987654432221 11134689999
Q ss_pred EeCCCCCCCCCHh----HHHhhhCCC--cCCCCceEEEEeccccCCCHHHHHHHHHHHHHhh
Q 029446 125 ANKQDMKGAMTPM----EVCEGLGLF--DLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEM 180 (193)
Q Consensus 125 ~nK~Dl~~~~~~~----~~~~~~~~~--~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~ 180 (193)
+||+|+.+..... ++.+.+... ....++.+++++||++|+|+++++++|.+.+...
T Consensus 224 lNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~~ 285 (355)
T 3p32_A 224 VNKADGEHHKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQVL 285 (355)
T ss_dssp EECCCGGGHHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHHH
T ss_pred EECCCCcChhHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHh
Confidence 9999987542222 222222110 0113356799999999999999999999988653
No 190
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.72 E-value=1.5e-16 Score=128.31 Aligned_cols=113 Identities=16% Similarity=0.194 Sum_probs=85.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcC------------------Ccccc-------ccccceeEEEEEEcCEEEEEEecCC
Q 029446 16 SEMRVVMLGLDAAGKTTILYKLHIG------------------EVLST-------VPTIGFNVEKVQYKNVIFTVWDVGG 70 (193)
Q Consensus 16 ~~~~v~v~G~~~~GKssli~~l~~~------------------~~~~~-------~~t~~~~~~~~~~~~~~~~i~D~~g 70 (193)
+.=+|+|+|+.++|||||..+|+.. ...++ ..|+......+.+++..++|+||||
T Consensus 30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPG 109 (548)
T 3vqt_A 30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPG 109 (548)
T ss_dssp TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCC
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCC
Confidence 3448999999999999999999521 11111 3344555667888999999999999
Q ss_pred CCCCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 029446 71 QEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA 133 (193)
Q Consensus 71 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 133 (193)
+.+|.......++-+|++++|+|+...-.-+.. ..|..... .++|.|+++||+|....
T Consensus 110 HvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~-~v~~~a~~----~~lp~i~fINK~Dr~~a 167 (548)
T 3vqt_A 110 HQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTR-KLMDVCRM----RATPVMTFVNKMDREAL 167 (548)
T ss_dssp GGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHH-HHHHHHHH----TTCCEEEEEECTTSCCC
T ss_pred cHHHHHHHHHHHHhcCceEEEeecCCCcccccH-HHHHHHHH----hCCceEEEEecccchhc
Confidence 999999999999999999999999865444443 33444433 57999999999998764
No 191
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.72 E-value=2.8e-18 Score=129.01 Aligned_cols=161 Identities=16% Similarity=0.164 Sum_probs=81.0
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhcC-Cccccc---------cccceeEEEEEE----cCEEEEEEecCCC-------
Q 029446 13 FGNSEMRVVMLGLDAAGKTTILYKLHIG-EVLSTV---------PTIGFNVEKVQY----KNVIFTVWDVGGQ------- 71 (193)
Q Consensus 13 ~~~~~~~v~v~G~~~~GKssli~~l~~~-~~~~~~---------~t~~~~~~~~~~----~~~~~~i~D~~g~------- 71 (193)
.....++|+++|++|+|||||++++++. .++... ++.......+.. ....+.+||++|.
T Consensus 14 l~~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~ 93 (301)
T 2qnr_A 14 KKGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCR 93 (301)
T ss_dssp ----CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC---------
T ss_pred EcCCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcH
Confidence 3456799999999999999999998875 333211 222222212211 2568999999998
Q ss_pred CCCHHhHH-------hhhcC-------------CCEEEEEEECCChhhHHHHH-HHHHHHHcCCCCCCCeEEEEEeCCCC
Q 029446 72 EKLRPLWR-------HYFNN-------------TDGLIYVVDSLDRERIGKAK-QEFQAIIKDPFMLNSVILVFANKQDM 130 (193)
Q Consensus 72 ~~~~~~~~-------~~~~~-------------~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~Dl 130 (193)
+.++.... .+++. +++++++.+++. .+++... ..+..+ . ...|+++|+||+|+
T Consensus 94 e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~~~~l~~l-~----~~~~iilV~~K~Dl 167 (301)
T 2qnr_A 94 DCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDVAFMKAI-H----NKVNIVPVIAKADT 167 (301)
T ss_dssp --CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHHHHHHHHH-T----TTSCEEEEECCGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHHHHHHHHH-H----hcCCEEEEEEeCCC
Confidence 55555443 33332 344666665432 1233332 222222 1 35789999999998
Q ss_pred CCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHHHHHHHHHhhh
Q 029446 131 KGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEMR 181 (193)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~ 181 (193)
....+... ........++..+++++++||+++ |++++|..+.+.+.+..
T Consensus 168 ~~~~e~~~-~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~~~ 216 (301)
T 2qnr_A 168 LTLKERER-LKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKASI 216 (301)
T ss_dssp SCHHHHHH-HHHHHHHHHHHTTCCCCCCC----------CHHHHHHHHTTC
T ss_pred CCHHHHHH-HHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhcCC
Confidence 76422111 111111112334568999999999 99999999999886554
No 192
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.71 E-value=3.5e-18 Score=132.74 Aligned_cols=80 Identities=25% Similarity=0.243 Sum_probs=47.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcc--cc-ccccceeEEEEE---------------------Ec---CEEEEEEecCC
Q 029446 18 MRVVMLGLDAAGKTTILYKLHIGEVL--ST-VPTIGFNVEKVQ---------------------YK---NVIFTVWDVGG 70 (193)
Q Consensus 18 ~~v~v~G~~~~GKssli~~l~~~~~~--~~-~~t~~~~~~~~~---------------------~~---~~~~~i~D~~g 70 (193)
++|+++|.+|+|||||+|++++.... .+ ..|...+..... +. ..++.+|||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 58999999999999999999987632 11 123333333211 11 36899999999
Q ss_pred CCC----CHHhHH---hhhcCCCEEEEEEECCCh
Q 029446 71 QEK----LRPLWR---HYFNNTDGLIYVVDSLDR 97 (193)
Q Consensus 71 ~~~----~~~~~~---~~~~~~d~~i~v~d~~~~ 97 (193)
... .+.+.. .+++++|++++|+|+++.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 754 222222 346889999999999875
No 193
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.71 E-value=1.6e-17 Score=134.03 Aligned_cols=121 Identities=22% Similarity=0.227 Sum_probs=83.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCcc----ccccccceeEEEEEEc------------------------C------
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHIGEVL----STVPTIGFNVEKVQYK------------------------N------ 60 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~----~~~~t~~~~~~~~~~~------------------------~------ 60 (193)
...++|+|+|.+|+|||||+|+|++..+. ...+++.......... +
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~ 142 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNR 142 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhccccccc
Confidence 35689999999999999999999998753 1222221110000000 0
Q ss_pred -----------EEEEEEecCCCCC-----------CHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCC
Q 029446 61 -----------VIFTVWDVGGQEK-----------LRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLN 118 (193)
Q Consensus 61 -----------~~~~i~D~~g~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~ 118 (193)
..+.+|||||... +......++..+|++++|+|+++....+....++..+.. .+
T Consensus 143 ~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~----~~ 218 (550)
T 2qpt_A 143 FMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG----HE 218 (550)
T ss_dssp EEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT----CG
T ss_pred ceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh----cC
Confidence 3689999999765 556677788999999999999875444555555555422 46
Q ss_pred CeEEEEEeCCCCCCCCCHhHH
Q 029446 119 SVILVFANKQDMKGAMTPMEV 139 (193)
Q Consensus 119 ~p~ivv~nK~Dl~~~~~~~~~ 139 (193)
.|+++|+||+|+....+..++
T Consensus 219 ~pvilVlNK~Dl~~~~el~~~ 239 (550)
T 2qpt_A 219 DKIRVVLNKADMVETQQLMRV 239 (550)
T ss_dssp GGEEEEEECGGGSCHHHHHHH
T ss_pred CCEEEEEECCCccCHHHHHHH
Confidence 889999999999875433333
No 194
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.71 E-value=9.1e-17 Score=123.07 Aligned_cols=152 Identities=16% Similarity=0.112 Sum_probs=90.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCC------cc--cccccc---------------------ceeEE----------E-
Q 029446 16 SEMRVVMLGLDAAGKTTILYKLHIGE------VL--STVPTI---------------------GFNVE----------K- 55 (193)
Q Consensus 16 ~~~~v~v~G~~~~GKssli~~l~~~~------~~--~~~~t~---------------------~~~~~----------~- 55 (193)
..+.|+++|.+|||||||+|++.+.. .. ...++. ..... .
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg~t 152 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGVT 152 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------CCSTTCTTEEEECC---------C
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcCcchhchHHHHHHhcCCCCEEEEecCCccccccch
Confidence 47899999999999999999998621 10 000100 00000 0
Q ss_pred ---------EEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEe
Q 029446 56 ---------VQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFAN 126 (193)
Q Consensus 56 ---------~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~n 126 (193)
+...+..+.++||+|.... .....+.+|++++|+|++.+...+.+.. .+ ...|.++|+|
T Consensus 153 r~~~~~~~~~~~~~~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i------l~~~~ivVlN 220 (349)
T 2www_A 153 RTTNEAILLCEGAGYDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR---GI------IEMADLVAVT 220 (349)
T ss_dssp TTHHHHHHHHHHTTCSEEEEECCCC--C---HHHHHTTCSEEEEEECCC---------------------CCSCSEEEEC
T ss_pred HHHHHHHHhhccCCCCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH---HH------HhcCCEEEEe
Confidence 0124678999999995322 2334578999999999986543221111 11 2357899999
Q ss_pred CCCCCCCCC----HhHHHhhhCCCcC--CCCceEEEEeccccCCCHHHHHHHHHHHHHh
Q 029446 127 KQDMKGAMT----PMEVCEGLGLFDL--KNRKWHIQGTCALKGDGLYEGLDWLASTLKE 179 (193)
Q Consensus 127 K~Dl~~~~~----~~~~~~~~~~~~~--~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~ 179 (193)
|+|+.+... ..++...+..... ..+..+++.+||++++|+++++++|.+.+..
T Consensus 221 K~Dl~~~~~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~~ 279 (349)
T 2www_A 221 KSDGDLIVPARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQDL 279 (349)
T ss_dssp CCSGGGHHHHHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred eecCCCchhHHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 999875321 1123222222111 1224578999999999999999999987643
No 195
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.70 E-value=1.4e-17 Score=119.84 Aligned_cols=154 Identities=15% Similarity=0.137 Sum_probs=94.3
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhcCCccc-------ccccc----------ceeEEEE------------------E
Q 029446 13 FGNSEMRVVMLGLDAAGKTTILYKLHIGEVLS-------TVPTI----------GFNVEKV------------------Q 57 (193)
Q Consensus 13 ~~~~~~~v~v~G~~~~GKssli~~l~~~~~~~-------~~~t~----------~~~~~~~------------------~ 57 (193)
...+..+|+++|.+|+|||||+++|....... ..+.. +.....+ .
T Consensus 26 ~~~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (221)
T 2wsm_A 26 RESGTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKK 105 (221)
T ss_dssp HHHTCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGG
T ss_pred cccCceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHh
Confidence 33467899999999999999999998652110 01100 1111111 1
Q ss_pred EcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--CC
Q 029446 58 YKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA--MT 135 (193)
Q Consensus 58 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~--~~ 135 (193)
.....+.+|||+|+..... .+....+.+++|+|+++... ....+ ... .+.|.++|+||+|+.+. ..
T Consensus 106 ~~~~d~iiidt~G~~~~~~---~~~~~~~~~i~vvd~~~~~~--~~~~~-~~~------~~~~~iiv~NK~Dl~~~~~~~ 173 (221)
T 2wsm_A 106 FSDCDLLLIENVGNLICPV---DFDLGENYRVVMVSVTEGDD--VVEKH-PEI------FRVADLIVINKVALAEAVGAD 173 (221)
T ss_dssp GTTCSEEEEEEEEBSSGGG---GCCCSCSEEEEEEEGGGCTT--HHHHC-HHH------HHTCSEEEEECGGGHHHHTCC
T ss_pred cCCCCEEEEeCCCCCCCCc---hhccccCcEEEEEeCCCcch--hhhhh-hhh------hhcCCEEEEecccCCcchhhH
Confidence 1346789999999521111 11125788999999976432 11111 111 24678999999998643 23
Q ss_pred HhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHHHHHHHHHhhh
Q 029446 136 PMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEMR 181 (193)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~ 181 (193)
.+++.+.+... ....+++++||++|+|+++++++|.+.+....
T Consensus 174 ~~~~~~~~~~~---~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~~ 216 (221)
T 2wsm_A 174 VEKMKADAKLI---NPRAKIIEMDLKTGKGFEEWIDFLRGILNVHS 216 (221)
T ss_dssp HHHHHHHHHHH---CTTSEEEECBTTTTBTHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHh---CCCCeEEEeecCCCCCHHHHHHHHHHHHHHHH
Confidence 44443333210 22458999999999999999999999886544
No 196
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.70 E-value=6.8e-17 Score=136.08 Aligned_cols=121 Identities=17% Similarity=0.121 Sum_probs=90.1
Q ss_pred HHHHhhhhcCCCccEEEEEcCCCCCHHHHHHHHhcCC------------ccc-------cccccceeEEEEEEc------
Q 029446 5 FRKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGE------------VLS-------TVPTIGFNVEKVQYK------ 59 (193)
Q Consensus 5 ~~~~~~~~~~~~~~~v~v~G~~~~GKssli~~l~~~~------------~~~-------~~~t~~~~~~~~~~~------ 59 (193)
++++++ ...+..+|+|+|+.++|||||+++|+... +.+ ...|+......+.+.
T Consensus 9 ~~~~m~--~~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~ 86 (842)
T 1n0u_A 9 MRSLMD--KVTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDV 86 (842)
T ss_dssp HHHHHH--CGGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHH
T ss_pred HHHHhh--CcccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEeccccccc
Confidence 344444 23467899999999999999999998641 111 122444444444443
Q ss_pred ----------CEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCC
Q 029446 60 ----------NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQD 129 (193)
Q Consensus 60 ----------~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 129 (193)
...+.+|||||+.+|...+..+++.+|++++|+|+++..+++....|. .... .+.|+|+|+||+|
T Consensus 87 ~~i~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~-~~~~----~~~p~ilviNK~D 161 (842)
T 1n0u_A 87 KEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLR-QALG----ERIKPVVVINKVD 161 (842)
T ss_dssp HHCSSCCCSSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHH-HHHH----TTCEEEEEEECHH
T ss_pred ccccccccCCCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HHHH----cCCCeEEEEECCC
Confidence 688999999999999999999999999999999999887777764443 3333 4689999999999
Q ss_pred CCC
Q 029446 130 MKG 132 (193)
Q Consensus 130 l~~ 132 (193)
+..
T Consensus 162 ~~~ 164 (842)
T 1n0u_A 162 RAL 164 (842)
T ss_dssp HHH
T ss_pred cch
Confidence 873
No 197
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.69 E-value=5.7e-17 Score=113.57 Aligned_cols=176 Identities=22% Similarity=0.293 Sum_probs=115.3
Q ss_pred hHHHHhhhhcCCCccEEEEEcCCC-CCHHHHHHHHhcCC-ccc-------c--ccccceeEE-----EEEE---------
Q 029446 4 AFRKLFDVFFGNSEMRVVMLGLDA-AGKTTILYKLHIGE-VLS-------T--VPTIGFNVE-----KVQY--------- 58 (193)
Q Consensus 4 ~~~~~~~~~~~~~~~~v~v~G~~~-~GKssli~~l~~~~-~~~-------~--~~t~~~~~~-----~~~~--------- 58 (193)
.+.+|+.+.-....++++++|+.= .=..+|+.++.... ... . +-..|+.+. .++.
T Consensus 3 ~~~~~~~s~~~~~~pr~amfgpgle~~~~~lv~~~m~~~~~~p~~g~~~~~~~gigsgv~~~~~~~~~fni~tlys~~~~ 82 (227)
T 3l82_B 3 AVTSFLHSLIIQNEPRFAMFGPGLEELNTSLVLSLMSSEELCPTAGLPQRQIDGIGSGVNFQLNNQHKFNILILYSTTRK 82 (227)
T ss_dssp -CCCSSSCCCCCCCCEEEEECGGGTSSSSCHHHHHHTCCSSCCEECCGGGCCTTSCCCEEEESSSSCEEEEEECSCC---
T ss_pred hHHHHHHHhccCCCceEEEecCCcccccHHHHHHHhcCCCcccccCCCCCCcCccccceEEEECCeeEEEEEEeccCcHH
Confidence 445566777778999999999852 33668888887654 111 0 111122211 1111
Q ss_pred c-----------CEEEEEEec------CCCCCCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHH---HHHHcCCC-CC
Q 029446 59 K-----------NVIFTVWDV------GGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEF---QAIIKDPF-ML 117 (193)
Q Consensus 59 ~-----------~~~~~i~D~------~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~---~~~~~~~~-~~ 117 (193)
. --++-.... +||...+..|+.|++++|++|||+|++|.+.++ ....+ ..++.... ..
T Consensus 83 er~~~~~~~~~~~~k~~~~~~~~~~~~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~ 161 (227)
T 3l82_B 83 ERDRAREEHTSAVNKMFSRHNEGDDQQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSS 161 (227)
T ss_dssp ----------------------------------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCS
T ss_pred HhhhhhhhhhhhhhhcccccCCCccccCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhC
Confidence 0 012333334 389999999999999999999999999876554 33333 33344332 36
Q ss_pred CCeEEEEEeCC-CCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHHHHHHHHHhhh
Q 029446 118 NSVILVFANKQ-DMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEMR 181 (193)
Q Consensus 118 ~~p~ivv~nK~-Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~ 181 (193)
+.|++|++||. |+.......++.+.+++... .+.+.+..|||++|+|+.+.++||.+.+..++
T Consensus 162 gapLLVlANKqqDlp~Ams~~EI~e~L~L~~l-~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~k~ 225 (227)
T 3l82_B 162 GRPLLVLSCISQGDVKRMPCFYLAHELHLNLL-NHPWLVQDTEAETLTGFLNGIEWILEEVESKR 225 (227)
T ss_dssp CSCEEEEEEESSTTSCBCCHHHHHHHTTGGGG-CSCEEEEEEETTTCTTHHHHHHHHTTTTTTC-
T ss_pred CCeEEEEeCCCcCccCCCCHHHHHHHcCCcCC-CCCEEEEEeECCCCcCHHHHHHHHHHHHHhhc
Confidence 89999999995 78888889999999998776 47899999999999999999999998886544
No 198
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.67 E-value=3.5e-17 Score=127.58 Aligned_cols=159 Identities=14% Similarity=0.169 Sum_probs=75.2
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhcCCcccc---------ccccceeEEEE--EE--cCEEEEEEecCCCCCCH----
Q 029446 13 FGNSEMRVVMLGLDAAGKTTILYKLHIGEVLST---------VPTIGFNVEKV--QY--KNVIFTVWDVGGQEKLR---- 75 (193)
Q Consensus 13 ~~~~~~~v~v~G~~~~GKssli~~l~~~~~~~~---------~~t~~~~~~~~--~~--~~~~~~i~D~~g~~~~~---- 75 (193)
...-.++|+|+|++|+|||||+|.|++..+... .+|.+.....+ +. ....+++||++|.....
T Consensus 27 l~~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~ 106 (418)
T 2qag_C 27 KRGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSN 106 (418)
T ss_dssp C-CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC----------
T ss_pred ecCCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchh
Confidence 345678999999999999999999998765311 12222221111 11 23579999999976531
Q ss_pred ---Hh------------------HHhhhcCCC--EEEEEEECCChhhHHHHH-HHHHHHHcCCCCCCCeEEEEEeCCCCC
Q 029446 76 ---PL------------------WRHYFNNTD--GLIYVVDSLDRERIGKAK-QEFQAIIKDPFMLNSVILVFANKQDMK 131 (193)
Q Consensus 76 ---~~------------------~~~~~~~~d--~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 131 (193)
.. .+.++.+++ +++|+.+++ ..+++... .++..+ . .+.|+|+|+||+|+.
T Consensus 107 ~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt-~~~L~~~d~~~lk~L-~----~~v~iIlVinK~Dll 180 (418)
T 2qag_C 107 CWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPS-GHGLKPLDIEFMKRL-H----EKVNIIPLIAKADTL 180 (418)
T ss_dssp -CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC--CCSCCHHHHHHHHHH-T----TTSEEEEEEESTTSS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCc-ccCCCHHHHHHHHHH-h----ccCcEEEEEEcccCc
Confidence 11 122334444 445554443 12344443 445444 2 368999999999987
Q ss_pred CCCCHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHHHHHHHHH
Q 029446 132 GAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLK 178 (193)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~ 178 (193)
.........+ .....+...+++++++|++++.++++++..+...++
T Consensus 181 ~~~ev~~~k~-~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~iP 226 (418)
T 2qag_C 181 TPEECQQFKK-QIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRLP 226 (418)
T ss_dssp CHHHHHHHHH-HHHHHHHHHTCCCCCCC-----------------CC
T ss_pred cHHHHHHHHH-HHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhhCC
Confidence 6422211111 111112234567999999999999998888877654
No 199
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.66 E-value=4.8e-15 Score=113.86 Aligned_cols=113 Identities=16% Similarity=0.107 Sum_probs=77.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCcc--cc-ccccceeEEEEEEcCEEEEEEecCCCCCC-------HHhHHhhhcCC
Q 029446 16 SEMRVVMLGLDAAGKTTILYKLHIGEVL--ST-VPTIGFNVEKVQYKNVIFTVWDVGGQEKL-------RPLWRHYFNNT 85 (193)
Q Consensus 16 ~~~~v~v~G~~~~GKssli~~l~~~~~~--~~-~~t~~~~~~~~~~~~~~~~i~D~~g~~~~-------~~~~~~~~~~~ 85 (193)
...+|+++|.||+|||||+|+|++.... .+ ..|.......+.+.+.+++++||||-... .......++.|
T Consensus 71 g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~a 150 (376)
T 4a9a_A 71 GVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVARTC 150 (376)
T ss_dssp SSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHHHHC
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHHhc
Confidence 3468999999999999999999987643 23 46778888889999999999999993221 11233455789
Q ss_pred CEEEEEEECCChhhH-HHHHHHHHHHHcCCCCCCCeEEEEEeCCCC
Q 029446 86 DGLIYVVDSLDRERI-GKAKQEFQAIIKDPFMLNSVILVFANKQDM 130 (193)
Q Consensus 86 d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl 130 (193)
|++++|+|++++..- +.+...+.... ......|.+++.||.|.
T Consensus 151 d~il~vvD~~~p~~~~~~i~~EL~~~~--~~l~~k~~~i~~nK~d~ 194 (376)
T 4a9a_A 151 NLLFIILDVNKPLHHKQIIEKELEGVG--IRLNKTPPDILIKKKEK 194 (376)
T ss_dssp SEEEEEEETTSHHHHHHHHHHHHHHTT--EEETCCCCCEEEEECSS
T ss_pred CccccccccCccHHHHHHHHHHHHHhh--HhhccCChhhhhhHhhh
Confidence 999999999986322 22222222211 11234566677777764
No 200
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.65 E-value=4.1e-15 Score=113.66 Aligned_cols=79 Identities=22% Similarity=0.265 Sum_probs=58.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcc--cc-ccccceeEEEEEEcC-----------------EEEEEEecCCCCCCHH-
Q 029446 18 MRVVMLGLDAAGKTTILYKLHIGEVL--ST-VPTIGFNVEKVQYKN-----------------VIFTVWDVGGQEKLRP- 76 (193)
Q Consensus 18 ~~v~v~G~~~~GKssli~~l~~~~~~--~~-~~t~~~~~~~~~~~~-----------------~~~~i~D~~g~~~~~~- 76 (193)
++|+++|.+|+|||||+|++++..+. .+ .+|.+.+...+.+.+ ..+.+|||||..++..
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~ 82 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK 82 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccc
Confidence 68999999999999999999987742 12 235555555555432 6899999999887642
Q ss_pred ---h---HHhhhcCCCEEEEEEECCC
Q 029446 77 ---L---WRHYFNNTDGLIYVVDSLD 96 (193)
Q Consensus 77 ---~---~~~~~~~~d~~i~v~d~~~ 96 (193)
+ ...+++++|++++|+|+++
T Consensus 83 ~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 83 GEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred cchHHHHHHHHHHhcCeEEEEEecCC
Confidence 1 2335689999999999985
No 201
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.64 E-value=2.2e-15 Score=124.46 Aligned_cols=156 Identities=17% Similarity=0.124 Sum_probs=98.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCcccc--c-cccce-----------------------------------------
Q 029446 16 SEMRVVMLGLDAAGKTTILYKLHIGEVLST--V-PTIGF----------------------------------------- 51 (193)
Q Consensus 16 ~~~~v~v~G~~~~GKssli~~l~~~~~~~~--~-~t~~~----------------------------------------- 51 (193)
..++|+|+|.+++|||||+|++++..+... . .|...
T Consensus 50 ~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~ 129 (772)
T 3zvr_A 50 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 129 (772)
T ss_dssp CCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhc
Confidence 558999999999999999999999765211 1 11100
Q ss_pred ------e----EEEEEE-cCEEEEEEecCCCCC-------------CHHhHHhhh-cCCCEEEEEEECCChhhHHHHHHH
Q 029446 52 ------N----VEKVQY-KNVIFTVWDVGGQEK-------------LRPLWRHYF-NNTDGLIYVVDSLDRERIGKAKQE 106 (193)
Q Consensus 52 ------~----~~~~~~-~~~~~~i~D~~g~~~-------------~~~~~~~~~-~~~d~~i~v~d~~~~~s~~~~~~~ 106 (193)
. ...+.. ...++.++||||-.. .......++ +.+|++++|+|++....-+.....
T Consensus 130 g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~l 209 (772)
T 3zvr_A 130 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKI 209 (772)
T ss_dssp CSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHH
T ss_pred CCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHH
Confidence 0 001111 234688999999433 222334444 478999999999865332232223
Q ss_pred HHHHHcCCCCCCCeEEEEEeCCCCCCCCCH-hHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHHHHHHH
Q 029446 107 FQAIIKDPFMLNSVILVFANKQDMKGAMTP-MEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAST 176 (193)
Q Consensus 107 ~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~ 176 (193)
+..+ .. .+.|+|+|+||+|+.+.... ..+.+. .....+....+++.+||++|.|++++.+.+.+.
T Consensus 210 l~~L-~~---~g~pvIlVlNKiDlv~~~~~~~~il~~-~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e 275 (772)
T 3zvr_A 210 AKEV-DP---QGQRTIGVITKLDLMDEGTDARDVLEN-KLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 275 (772)
T ss_dssp HHHH-CT---TCSSEEEEEECTTSSCTTCCSHHHHTT-CSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred HHHH-Hh---cCCCEEEEEeCcccCCcchhhHHHHHH-HhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence 3333 22 47899999999999875332 222221 111112223578999999999999999998863
No 202
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.64 E-value=1.1e-16 Score=122.25 Aligned_cols=153 Identities=14% Similarity=0.122 Sum_probs=92.8
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcC------Ccc--cccc--cc-------------------ceeEEE---------
Q 029446 14 GNSEMRVVMLGLDAAGKTTILYKLHIG------EVL--STVP--TI-------------------GFNVEK--------- 55 (193)
Q Consensus 14 ~~~~~~v~v~G~~~~GKssli~~l~~~------~~~--~~~~--t~-------------------~~~~~~--------- 55 (193)
......|+++|.+|+|||||++.+.+. ... ...+ +. ......
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~~~~~~~~i~~~~~~~~l~g 132 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGG 132 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----C
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhhccCCCceeecCccccccch
Confidence 456788999999999999999999632 110 0000 00 000000
Q ss_pred -----------EEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEE
Q 029446 56 -----------VQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVF 124 (193)
Q Consensus 56 -----------~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv 124 (193)
....+..+.+|||||....... ....+|++++|+|++....++.+.. .. .+.|.++|
T Consensus 133 ~~~~~~~~~~~~~~~~~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~~~l~~---~~------~~~p~ivv 200 (341)
T 2p67_A 133 ASQRARELMLLCEAAGYDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDDLQGIKK---GL------MEVADLIV 200 (341)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEEEECCTTHHHH---HHTTCSEEEEEECC------CCCCH---HH------HHHCSEEE
T ss_pred hHHHHHHHHHHhhccCCCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHHHHHHHH---hh------hcccCEEE
Confidence 0123678999999997654432 4588999999999975432211100 00 14578999
Q ss_pred EeCCCCCCCCCHh----HHHhhhCCCc--CCCCceEEEEeccccCCCHHHHHHHHHHHHH
Q 029446 125 ANKQDMKGAMTPM----EVCEGLGLFD--LKNRKWHIQGTCALKGDGLYEGLDWLASTLK 178 (193)
Q Consensus 125 ~nK~Dl~~~~~~~----~~~~~~~~~~--~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~ 178 (193)
+||+|+.+..... ++.+.+.... ...+..+++++||++|+|+++++++|.+.+.
T Consensus 201 ~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 201 INKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp ECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred EECCCCCChHHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 9999987642222 2222111110 1123457999999999999999999998775
No 203
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.63 E-value=2.4e-16 Score=116.16 Aligned_cols=162 Identities=15% Similarity=0.058 Sum_probs=95.0
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHh-----cCCcc--ccccc---c----ce------eEEEE----------------
Q 029446 13 FGNSEMRVVMLGLDAAGKTTILYKLH-----IGEVL--STVPT---I----GF------NVEKV---------------- 56 (193)
Q Consensus 13 ~~~~~~~v~v~G~~~~GKssli~~l~-----~~~~~--~~~~t---~----~~------~~~~~---------------- 56 (193)
...+...+++.|.+|+||||+++.+. +.... +..+. . +. +....
T Consensus 10 ~~~~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (262)
T 1yrb_A 10 HGMASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGYGPNGAIVESYD 89 (262)
T ss_dssp TTCCCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTTTCCHHHHHHHHHH
T ss_pred CCcceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCCccccCCCCCCChhhcccHHHHhhccCCCCCcEEecHH
Confidence 44577889999999999999999997 43321 11110 0 00 00000
Q ss_pred --------------E-EcCEEEEEEecCCCCCCHHhHH------hhhcCCCEEEEEEECCChhhHHHHHH---HHHHHHc
Q 029446 57 --------------Q-YKNVIFTVWDVGGQEKLRPLWR------HYFNNTDGLIYVVDSLDRERIGKAKQ---EFQAIIK 112 (193)
Q Consensus 57 --------------~-~~~~~~~i~D~~g~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~---~~~~~~~ 112 (193)
. .....+.+|||||+........ ..+.. +++++++|+....+...... .......
T Consensus 90 ~~~~~~~~l~~~l~~~~~~~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~ 168 (262)
T 1yrb_A 90 RLMEKFNEYLNKILRLEKENDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDL 168 (262)
T ss_dssp HHHTTHHHHHHHHHHHHHHCSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHhhcCCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhc
Confidence 0 0135799999999876543221 24466 89999998854322222221 1111111
Q ss_pred CCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCC-C----c------------------CC--CCceEEEEeccccCCCHH
Q 029446 113 DPFMLNSVILVFANKQDMKGAMTPMEVCEGLGL-F----D------------------LK--NRKWHIQGTCALKGDGLY 167 (193)
Q Consensus 113 ~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-~----~------------------~~--~~~~~~~~~Sa~~~~gi~ 167 (193)
. .+.|+++|+||+|+......+++.+.+.. . . ++ ....+++++||++++|++
T Consensus 169 ~---~~~p~~iv~NK~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~ 245 (262)
T 1yrb_A 169 R---LGATTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFE 245 (262)
T ss_dssp H---HTSCEEEEECCGGGCCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHH
T ss_pred c---cCCCeEEEEecccccccccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHH
Confidence 1 35789999999998764222111111100 0 0 00 122368999999999999
Q ss_pred HHHHHHHHHHH
Q 029446 168 EGLDWLASTLK 178 (193)
Q Consensus 168 ~~~~~l~~~~~ 178 (193)
+++++|.+.+.
T Consensus 246 ~l~~~i~~~~~ 256 (262)
T 1yrb_A 246 DLETLAYEHYC 256 (262)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 99999998774
No 204
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.61 E-value=6.3e-16 Score=126.82 Aligned_cols=158 Identities=19% Similarity=0.203 Sum_probs=111.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhc--CCc------------ccc-------ccccceeEEEEEEcCEEEEEEecCCCCCCHHh
Q 029446 19 RVVMLGLDAAGKTTILYKLHI--GEV------------LST-------VPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPL 77 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~--~~~------------~~~-------~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~ 77 (193)
||+|+|+.++|||||..+|.. +.. .++ ..|+......+.+++..++++||||+.+|...
T Consensus 4 Ni~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~E 83 (638)
T 3j25_A 4 NIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLAE 83 (638)
T ss_dssp CCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHHH
Confidence 789999999999999999963 111 111 22444445567778899999999999999999
Q ss_pred HHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH---hHHHhhhCCCcC------
Q 029446 78 WRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP---MEVCEGLGLFDL------ 148 (193)
Q Consensus 78 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~---~~~~~~~~~~~~------ 148 (193)
....++-+|++++|+|+...-.-+.. ..|..... .++|.|+++||+|....+.. +++.+.++....
T Consensus 84 v~raL~~~DgavlVVDa~~GV~~qT~-~v~~~a~~----~~lp~i~~INKmDr~~a~~~~~~~~i~~~l~~~~~~~~~~~ 158 (638)
T 3j25_A 84 VYRSLSVLDGAILLISAKDGVQAQTR-ILFHALRK----MGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVE 158 (638)
T ss_dssp HHHHHTTCSEEECCEESSCTTCSHHH-HHHHHHHH----HTCSCEECCEECCSSSCCSHHHHHHHHHTTCCCCCCCCCCC
T ss_pred HHHHHHHhCEEEEEEeCCCCCcHHHH-HHHHHHHH----cCCCeEEEEeccccccCCHHHHHHHHHHHhCCCccccceeE
Confidence 99999999999999999865332332 33444433 46889999999998765322 223332221100
Q ss_pred --------------------------------------------------CCCceEEEEeccccCCCHHHHHHHHHHHHH
Q 029446 149 --------------------------------------------------KNRKWHIQGTCALKGDGLYEGLDWLASTLK 178 (193)
Q Consensus 149 --------------------------------------------------~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~ 178 (193)
...-.|++..||.++.|++.+++.+.+.+.
T Consensus 159 ~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~i~~~~p 238 (638)
T 3j25_A 159 LYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSNIGIDNLIEVITNKFY 238 (638)
T ss_dssp SCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCCCSTTCCSHHHHHHHHHHSCC
T ss_pred eeccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhcccccccccccccccCCCchhHhhhhhcccc
Confidence 011257888999999999999999998776
Q ss_pred hhh
Q 029446 179 EMR 181 (193)
Q Consensus 179 ~~~ 181 (193)
.-.
T Consensus 239 ~p~ 241 (638)
T 3j25_A 239 SST 241 (638)
T ss_dssp CSG
T ss_pred Ccc
Confidence 443
No 205
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=99.60 E-value=1.1e-15 Score=112.11 Aligned_cols=112 Identities=25% Similarity=0.380 Sum_probs=88.1
Q ss_pred cCCCCCCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHH---HHHcCCC-CCCCeEEEEEeC-CCCCCCCCHhHHHhh
Q 029446 68 VGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQ---AIIKDPF-MLNSVILVFANK-QDMKGAMTPMEVCEG 142 (193)
Q Consensus 68 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~---~~~~~~~-~~~~p~ivv~nK-~Dl~~~~~~~~~~~~ 142 (193)
.+||+..+..|+.|++++|++|||+|++|.+.++ ....+. .++.... ..+.|++|++|| -|+.......++.+.
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~ 272 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHE 272 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHHH
Confidence 4689999999999999999999999999887654 222222 3332211 368899999997 589888889999999
Q ss_pred hCCCcCCCCceEEEEeccccCCCHHHHHHHHHHHHHhhh
Q 029446 143 LGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEMR 181 (193)
Q Consensus 143 ~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~ 181 (193)
+++... .+.+.+..|||.+|+|+.+.++||.+.+..++
T Consensus 273 L~L~~l-~r~W~Iq~csA~tGeGL~EGldWL~~~l~~k~ 310 (312)
T 3l2o_B 273 LHLNLL-NHPWLVQDTEAETLTGFLNGIEWILEEVESKR 310 (312)
T ss_dssp TTGGGG-CSCEEEEEEETTTCTTHHHHHHHHHHHSCC--
T ss_pred cCCccC-CCcEEEEecccCCCcCHHHHHHHHHHHHHhhc
Confidence 998776 47889999999999999999999999886544
No 206
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.58 E-value=5.2e-14 Score=116.88 Aligned_cols=111 Identities=20% Similarity=0.126 Sum_probs=78.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC--------C------cccc-------ccccceeEEEEEE-------cCEEEEEEecC
Q 029446 18 MRVVMLGLDAAGKTTILYKLHIG--------E------VLST-------VPTIGFNVEKVQY-------KNVIFTVWDVG 69 (193)
Q Consensus 18 ~~v~v~G~~~~GKssli~~l~~~--------~------~~~~-------~~t~~~~~~~~~~-------~~~~~~i~D~~ 69 (193)
=+|+|+|+.++|||||..+|... . +.++ ..|+......+.+ ++..++++|||
T Consensus 14 RNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDTP 93 (709)
T 4fn5_A 14 RNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVIDTP 93 (709)
T ss_dssp EEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEECCC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEeCC
Confidence 38999999999999999998631 1 1111 1222233334444 25899999999
Q ss_pred CCCCCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 029446 70 GQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA 133 (193)
Q Consensus 70 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 133 (193)
||.+|.......++-+|++++|+|+...-.-+.. ..|..... .+.|.|+++||+|....
T Consensus 94 GHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~-~v~~~a~~----~~lp~i~~iNKiDr~~a 152 (709)
T 4fn5_A 94 GHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSE-TVWRQANK----YGVPRIVYVNKMDRQGA 152 (709)
T ss_dssp SCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHH-HHHHHHHH----HTCCEEEEEECSSSTTC
T ss_pred CCcccHHHHHHHHHHhCeEEEEEECCCCCchhHH-HHHHHHHH----cCCCeEEEEccccccCc
Confidence 9999999999999999999999999765433333 33444433 47899999999998654
No 207
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.57 E-value=4.3e-14 Score=108.57 Aligned_cols=79 Identities=22% Similarity=0.243 Sum_probs=56.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcc--cc-ccccceeEEEEEE---------------------cCEEEEEEecCCCCC
Q 029446 18 MRVVMLGLDAAGKTTILYKLHIGEVL--ST-VPTIGFNVEKVQY---------------------KNVIFTVWDVGGQEK 73 (193)
Q Consensus 18 ~~v~v~G~~~~GKssli~~l~~~~~~--~~-~~t~~~~~~~~~~---------------------~~~~~~i~D~~g~~~ 73 (193)
++|+++|.+|+|||||+|++++.... .+ ..|...+...... .+..+.+||+||..+
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 68999999999999999999976421 11 2344444433322 246799999999765
Q ss_pred CH-------HhHHhhhcCCCEEEEEEECCC
Q 029446 74 LR-------PLWRHYFNNTDGLIYVVDSLD 96 (193)
Q Consensus 74 ~~-------~~~~~~~~~~d~~i~v~d~~~ 96 (193)
.. ......++.+|++++|+|+++
T Consensus 82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred cccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 42 223445789999999999975
No 208
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.56 E-value=8e-17 Score=116.18 Aligned_cols=151 Identities=15% Similarity=0.130 Sum_probs=84.9
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccee----------------EEEEEEc-----------------
Q 029446 14 GNSEMRVVMLGLDAAGKTTILYKLHIGEVLS-TVPTIGFN----------------VEKVQYK----------------- 59 (193)
Q Consensus 14 ~~~~~~v~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~----------------~~~~~~~----------------- 59 (193)
..+.++|+++|.+|+|||||+++|....+.. +.++++.+ ...+...
T Consensus 35 ~~~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l 114 (226)
T 2hf9_A 35 KHGVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDL 114 (226)
T ss_dssp HTTCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTS
T ss_pred hCCCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHH
Confidence 3467999999999999999999998764432 22222211 1111100
Q ss_pred ---CEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--C
Q 029446 60 ---NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA--M 134 (193)
Q Consensus 60 ---~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~--~ 134 (193)
...+.+.|++|.-.... .+-...+..+.++|+........ ..... ...|.++|+||+|+.+. .
T Consensus 115 ~~~~~d~~~id~~g~i~~~~---s~~~~~~~~~~v~~~~~~~~~~~---~~~~~------~~~~~iiv~NK~Dl~~~~~~ 182 (226)
T 2hf9_A 115 NLDEIDLLFIENVGNLICPA---DFDLGTHKRIVVISTTEGDDTIE---KHPGI------MKTADLIVINKIDLADAVGA 182 (226)
T ss_dssp CGGGCSEEEEECCSCSSGGG---GCCCSCSEEEEEEEGGGCTTTTT---TCHHH------HTTCSEEEEECGGGHHHHTC
T ss_pred hcCCCCEEEEeCCCCccCcc---hhhhccCcEEEEEecCcchhhHh---hhhhH------hhcCCEEEEeccccCchhHH
Confidence 11455666665321111 11112344556666422111000 00011 13567999999998653 2
Q ss_pred CHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHHHHHHHHHh
Q 029446 135 TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKE 179 (193)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~ 179 (193)
..++..+.+.. ...+.+++++||++|+|+++++++|.+.+..
T Consensus 183 ~~~~~~~~~~~---~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~ 224 (226)
T 2hf9_A 183 DIKKMENDAKR---INPDAEVVLLSLKTMEGFDKVLEFIEKSVKE 224 (226)
T ss_dssp CHHHHHHHHHH---HCTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---hCCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence 33333332211 0224589999999999999999999988754
No 209
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.56 E-value=4.7e-16 Score=116.92 Aligned_cols=112 Identities=21% Similarity=0.167 Sum_probs=84.9
Q ss_pred CCCCHHhHHhhhcCCCEEEEEEECCChh-hHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC---HhHHHhhhCCC
Q 029446 71 QEKLRPLWRHYFNNTDGLIYVVDSLDRE-RIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT---PMEVCEGLGLF 146 (193)
Q Consensus 71 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~---~~~~~~~~~~~ 146 (193)
++++..+.+.++.++|++++|+|++++. ++..+..|+..+.. .++|+++|+||+|+.+... .++..+..
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~----~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~--- 138 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY----FKVEPVIVFNKIDLLNEEEKKELERWISIY--- 138 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH----TTCEEEEEECCGGGCCHHHHHHHHHHHHHH---
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh----CCCCEEEEEEcccCCCccccHHHHHHHHHH---
Confidence 7788888888999999999999999886 88888888876543 5799999999999976421 11222211
Q ss_pred cCCCCceEEEEeccccCCCHHHHHHHHHHHHHhhhccCCCCCCcCCC
Q 029446 147 DLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEMRAAGYSSVGTSSF 193 (193)
Q Consensus 147 ~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~~~~~~~~~~~~~ 193 (193)
+..+++++++||++++|++++++.+...+. .--|.+++|||+|
T Consensus 139 --~~~g~~~~~~SA~~g~gi~~L~~~l~G~i~--~l~G~sG~GKSTL 181 (302)
T 2yv5_A 139 --RDAGYDVLKVSAKTGEGIDELVDYLEGFIC--ILAGPSGVGKSSI 181 (302)
T ss_dssp --HHTTCEEEECCTTTCTTHHHHHHHTTTCEE--EEECSTTSSHHHH
T ss_pred --HHCCCeEEEEECCCCCCHHHHHhhccCcEE--EEECCCCCCHHHH
Confidence 223568999999999999999988765432 2348999999864
No 210
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.50 E-value=1.1e-13 Score=105.43 Aligned_cols=153 Identities=16% Similarity=0.106 Sum_probs=91.4
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhc------CCcc--cccc--cc------------c-----eeEEE-----------
Q 029446 14 GNSEMRVVMLGLDAAGKTTILYKLHI------GEVL--STVP--TI------------G-----FNVEK----------- 55 (193)
Q Consensus 14 ~~~~~~v~v~G~~~~GKssli~~l~~------~~~~--~~~~--t~------------~-----~~~~~----------- 55 (193)
......++++|++|||||||++.+.+ +... ...+ +. + .....
T Consensus 52 ~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G 131 (337)
T 2qm8_A 52 TGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGG 131 (337)
T ss_dssp CCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccccccCcccccccc
Confidence 35667899999999999999999973 2221 0000 00 0 00000
Q ss_pred -----------EEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEE
Q 029446 56 -----------VQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVF 124 (193)
Q Consensus 56 -----------~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv 124 (193)
+...+.++.++||||...-.. .....+|.+++++|+......+.+..... ..|.+++
T Consensus 132 ~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~---~v~~~~d~vl~v~d~~~~~~~~~i~~~i~---------~~~~ivv 199 (337)
T 2qm8_A 132 VAAKTRETMLLCEAAGFDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDELQGIKKGIF---------ELADMIA 199 (337)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC------CCTTHH---------HHCSEEE
T ss_pred hHHHHHHHHHHHhcCCCCEEEEECCCCCcchh---hHHhhCCEEEEEEcCCCcccHHHHHHHHh---------ccccEEE
Confidence 112477899999999654332 23478999999999864432211111111 2345788
Q ss_pred EeCCCCCCCCC-----HhHHHhhhCCCcC--CCCceEEEEeccccCCCHHHHHHHHHHHHH
Q 029446 125 ANKQDMKGAMT-----PMEVCEGLGLFDL--KNRKWHIQGTCALKGDGLYEGLDWLASTLK 178 (193)
Q Consensus 125 ~nK~Dl~~~~~-----~~~~~~~~~~~~~--~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~ 178 (193)
+||+|+..... .+++...+..... ..+..+++.+||+++.|++++++.|.+...
T Consensus 200 lNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 200 VNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp EECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred EEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 89999764321 1223332322110 012346888999999999999999988765
No 211
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.34 E-value=2.5e-12 Score=99.31 Aligned_cols=83 Identities=19% Similarity=0.296 Sum_probs=52.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCcc-c--cccccceeEEEEEEc-----------------CEEEEEEecCCCCCC
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHIGEVL-S--TVPTIGFNVEKVQYK-----------------NVIFTVWDVGGQEKL 74 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~-~--~~~t~~~~~~~~~~~-----------------~~~~~i~D~~g~~~~ 74 (193)
...++|+++|.+|+|||||+|++++.... . ...|...+...+... +..+.+||+||....
T Consensus 20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~ 99 (396)
T 2ohf_A 20 GTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKG 99 (396)
T ss_dssp SSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC----
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccc
Confidence 35689999999999999999999987653 1 134555555555432 346999999997765
Q ss_pred HH-------hHHhhhcCCCEEEEEEECCCh
Q 029446 75 RP-------LWRHYFNNTDGLIYVVDSLDR 97 (193)
Q Consensus 75 ~~-------~~~~~~~~~d~~i~v~d~~~~ 97 (193)
.. .+..+++++|++++|+|+++.
T Consensus 100 as~~~glg~~~l~~ir~aD~Il~VvD~~~~ 129 (396)
T 2ohf_A 100 AHNGQGLGNAFLSHISACDGIFHLTRAFED 129 (396)
T ss_dssp -------CCHHHHHHHTSSSEEEEEEC---
T ss_pred cchhhHHHHHHHHHHHhcCeEEEEEecCCC
Confidence 43 456677999999999999753
No 212
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.34 E-value=2e-13 Score=105.24 Aligned_cols=116 Identities=18% Similarity=0.180 Sum_probs=78.9
Q ss_pred CCCCCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCcC
Q 029446 70 GQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT-PMEVCEGLGLFDL 148 (193)
Q Consensus 70 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~~~~ 148 (193)
.+++|++.+..+.+.++++++|+|++++. ..|...+.+. ..+.|+++|+||+|+.+... .+++.+.+. ..+
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~--~~~~p~ilV~NK~DL~~~~~~~~~~~~~l~-~~~ 126 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRF--VGNNKVLLVGNKADLIPKSVKHDKVKHWMR-YSA 126 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHH--SSSSCEEEEEECGGGSCTTSCHHHHHHHHH-HHH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHH--hCCCcEEEEEEChhcCCcccCHHHHHHHHH-HHH
Confidence 46789999999999999999999998753 1232222221 13789999999999976532 222211110 001
Q ss_pred CCCce---EEEEeccccCCCHHHHHHHHHHHHHhhh--ccCCCCCCcCCC
Q 029446 149 KNRKW---HIQGTCALKGDGLYEGLDWLASTLKEMR--AAGYSSVGTSSF 193 (193)
Q Consensus 149 ~~~~~---~~~~~Sa~~~~gi~~~~~~l~~~~~~~~--~~~~~~~~~~~~ 193 (193)
+..++ +++.+||++|+|++++++.+.+...... --|.+++|||+|
T Consensus 127 ~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~~~~~i~~vG~~nvGKStl 176 (368)
T 3h2y_A 127 KQLGLKPEDVFLISAAKGQGIAELADAIEYYRGGKDVYVVGCTNVGKSTF 176 (368)
T ss_dssp HHTTCCCSEEEECCTTTCTTHHHHHHHHHHHHTTSCEEEEEBTTSSHHHH
T ss_pred HHcCCCcccEEEEeCCCCcCHHHHHhhhhhhcccceEEEecCCCCChhHH
Confidence 12223 7899999999999999999987664332 238899999874
No 213
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.32 E-value=3.5e-13 Score=103.90 Aligned_cols=117 Identities=15% Similarity=0.134 Sum_probs=79.4
Q ss_pred CCCCCCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCc
Q 029446 69 GGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT-PMEVCEGLGLFD 147 (193)
Q Consensus 69 ~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~~~ 147 (193)
..+++|++.+..+++.++++++|+|++++.+ .....+...+ .+.|+++|+||+|+.+... .+++.+.+. ..
T Consensus 56 ~~~e~f~~~L~~~~~~~~lil~VvD~~d~~~--s~~~~l~~~l-----~~~piilV~NK~DLl~~~~~~~~~~~~l~-~~ 127 (369)
T 3ec1_A 56 LDDDDFLSMLHRIGESKALVVNIVDIFDFNG--SFIPGLPRFA-----ADNPILLVGNKADLLPRSVKYPKLLRWMR-RM 127 (369)
T ss_dssp ---CHHHHHHHHHHHHCCEEEEEEETTCSGG--GCCSSHHHHC-----TTSCEEEEEECGGGSCTTCCHHHHHHHHH-HH
T ss_pred CCHHHHHHHHHHhhccCcEEEEEEECCCCCC--chhhHHHHHh-----CCCCEEEEEEChhcCCCccCHHHHHHHHH-HH
Confidence 3588899999999999999999999998763 1111122221 3789999999999987532 222221110 00
Q ss_pred CCCCce---EEEEeccccCCCHHHHHHHHHHHHHhhh--ccCCCCCCcCCC
Q 029446 148 LKNRKW---HIQGTCALKGDGLYEGLDWLASTLKEMR--AAGYSSVGTSSF 193 (193)
Q Consensus 148 ~~~~~~---~~~~~Sa~~~~gi~~~~~~l~~~~~~~~--~~~~~~~~~~~~ 193 (193)
++..+. +++.+||++|+|++++++.+.+...... --|.+++|||||
T Consensus 128 ~~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~~~~~i~~vG~~nvGKStl 178 (369)
T 3ec1_A 128 AEELGLCPVDVCLVSAAKGIGMAKVMEAINRYREGGDVYVVGCTNVGKSTF 178 (369)
T ss_dssp HHTTTCCCSEEEECBTTTTBTHHHHHHHHHHHHTTSCEEEECCTTSSHHHH
T ss_pred HHHcCCCcccEEEEECCCCCCHHHHHHHHHhhcccCcEEEEcCCCCchHHH
Confidence 122232 6899999999999999999988764432 239999999874
No 214
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=99.29 E-value=1.3e-12 Score=97.15 Aligned_cols=117 Identities=20% Similarity=0.155 Sum_probs=78.8
Q ss_pred EEecCCCC-CCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhh
Q 029446 65 VWDVGGQE-KLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGL 143 (193)
Q Consensus 65 i~D~~g~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~ 143 (193)
|-..||+. .........+.++|+++.|+|+.++.+... ..+..++ .++|.++|+||+|+.+....+.+.+.+
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~--~~l~~~l-----~~kp~ilVlNK~DL~~~~~~~~~~~~~ 75 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRN--PMIEDIL-----KNKPRIMLLNKADKADAAVTQQWKEHF 75 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSC--HHHHHHC-----SSSCEEEEEECGGGSCHHHHHHHHHHH
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCC--HHHHHHH-----CCCCEEEEEECcccCCHHHHHHHHHHH
Confidence 44567866 455566777899999999999998876542 1222332 468999999999998742222333332
Q ss_pred CCCcCCCCceEEEEeccccCCCHHHHHHHHHHHHHhhh----------------ccCCCCCCcCCC
Q 029446 144 GLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEMR----------------AAGYSSVGTSSF 193 (193)
Q Consensus 144 ~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~----------------~~~~~~~~~~~~ 193 (193)
+..+++++.+||+++.|++++++.+.+.+.+.. --|.+++|||||
T Consensus 76 -----~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~v~~vG~~nvGKSsl 136 (282)
T 1puj_A 76 -----ENQGIRSLSINSVNGQGLNQIVPASKEILQEKFDRMRAKGVKPRAIRALIIGIPNVGKSTL 136 (282)
T ss_dssp -----HTTTCCEEECCTTTCTTGGGHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEESTTSSHHHH
T ss_pred -----HhcCCcEEEEECCCcccHHHHHHHHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCchHHH
Confidence 123457899999999999999998888776331 128899999874
No 215
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.09 E-value=6.6e-10 Score=85.95 Aligned_cols=81 Identities=21% Similarity=0.344 Sum_probs=59.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCc-c-cc--ccccceeEEEEEEcC-----------------EEEEEEecCCCC--
Q 029446 16 SEMRVVMLGLDAAGKTTILYKLHIGEV-L-ST--VPTIGFNVEKVQYKN-----------------VIFTVWDVGGQE-- 72 (193)
Q Consensus 16 ~~~~v~v~G~~~~GKssli~~l~~~~~-~-~~--~~t~~~~~~~~~~~~-----------------~~~~i~D~~g~~-- 72 (193)
...+++++|.+|||||||+|.+++... . .. ..|...+...+...+ ..+.+||+||..
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~ 98 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKG 98 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccC
Confidence 467999999999999999999999664 2 22 235555555555543 578999999932
Q ss_pred -----CCHHhHHhhhcCCCEEEEEEECCC
Q 029446 73 -----KLRPLWRHYFNNTDGLIYVVDSLD 96 (193)
Q Consensus 73 -----~~~~~~~~~~~~~d~~i~v~d~~~ 96 (193)
.+.......++.+|++++|+|+.+
T Consensus 99 ~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 99 ASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 233345566789999999999864
No 216
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=99.08 E-value=1.3e-09 Score=86.80 Aligned_cols=153 Identities=17% Similarity=0.114 Sum_probs=88.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHh------cCCcc----cc-ccc-----------cceeEEE-----------------E
Q 029446 16 SEMRVVMLGLDAAGKTTILYKLH------IGEVL----ST-VPT-----------IGFNVEK-----------------V 56 (193)
Q Consensus 16 ~~~~v~v~G~~~~GKssli~~l~------~~~~~----~~-~~t-----------~~~~~~~-----------------~ 56 (193)
....|+++|.+|+||||++++|. +.... +. .+. .++.+.. .
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~ 179 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF 179 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998 43321 00 000 0111111 0
Q ss_pred EEcCEEEEEEecCCCCCCHH-hHHh---h--hcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeE-EEEEeCCC
Q 029446 57 QYKNVIFTVWDVGGQEKLRP-LWRH---Y--FNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVI-LVFANKQD 129 (193)
Q Consensus 57 ~~~~~~~~i~D~~g~~~~~~-~~~~---~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~-ivv~nK~D 129 (193)
......+.++||||...... .... . ...+|.+++|+|+.......+. ...+.. ..|+ ++|+||.|
T Consensus 180 ~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~~---a~~~~~-----~~~i~gvVlNK~D 251 (504)
T 2j37_W 180 KNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQ---AKAFKD-----KVDVASVIVTKLD 251 (504)
T ss_dssp HHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHHH---HHHHHH-----HHCCCCEEEECTT
T ss_pred HHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHHH---HHHHHh-----hcCceEEEEeCCc
Confidence 11567899999999764321 1111 1 1279999999999865432222 222211 1454 79999999
Q ss_pred CCCCCCH-hHHHhhhCCCc-----CCC-C----ceEEEEeccccCCC-HHHHHHHHHHH
Q 029446 130 MKGAMTP-MEVCEGLGLFD-----LKN-R----KWHIQGTCALKGDG-LYEGLDWLAST 176 (193)
Q Consensus 130 l~~~~~~-~~~~~~~~~~~-----~~~-~----~~~~~~~Sa~~~~g-i~~~~~~l~~~ 176 (193)
....... ..+...++.+. -+. . ..+.+.+|+..|.| +.++++++.+.
T Consensus 252 ~~~~~g~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 252 GHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp SCCCCTHHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred cccchHHHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 8755332 23334443221 000 0 01234589999999 99999988766
No 217
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.97 E-value=5.7e-11 Score=91.58 Aligned_cols=111 Identities=14% Similarity=0.135 Sum_probs=65.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC-----Ccc--ccccccceeEEEEEEcCEEEEEEecCCCCCCH--------HhHHhh
Q 029446 17 EMRVVMLGLDAAGKTTILYKLHIG-----EVL--STVPTIGFNVEKVQYKNVIFTVWDVGGQEKLR--------PLWRHY 81 (193)
Q Consensus 17 ~~~v~v~G~~~~GKssli~~l~~~-----~~~--~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~--------~~~~~~ 81 (193)
..+++++|.+|+|||||+|++.+. ... ...|.+......+... ..+.++||||-.... .....+
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~-~~~~liDtPG~~~~~~~~~~l~~~~l~~~ 240 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLE-SGATLYDTPGIINHHQMAHFVDARDLKII 240 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECS-TTCEEEECCSCCCCSSGGGGSCTTTHHHH
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeC-CCeEEEeCCCcCcHHHHHHHHhHHHHHHH
Confidence 358999999999999999999986 222 1122222222233322 238999999943211 111222
Q ss_pred h--cCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 029446 82 F--NNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA 133 (193)
Q Consensus 82 ~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 133 (193)
+ +..+.+++++++.....+..+.. .+.+. ..+.|+++++||.|..+.
T Consensus 241 ~~~~~i~~~~~~l~~~~~~~~g~l~~--l~~l~---~~~~~~~~v~~k~d~~~~ 289 (369)
T 3ec1_A 241 TPKREIHPRVYQLNEGQTLFFGGLAR--LDYIK---GGRRSFVCYMANELTVHR 289 (369)
T ss_dssp SCSSCCCCEEEEECTTEEEEETTTEE--EEEEE---SSSEEEEEEECTTSCEEE
T ss_pred hcccccCceEEEEcCCceEEECCEEE--EEEcc---CCCceEEEEecCCccccc
Confidence 2 56899999999843211111100 11112 246899999999998764
No 218
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.96 E-value=1.3e-09 Score=84.98 Aligned_cols=141 Identities=12% Similarity=0.101 Sum_probs=72.1
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhcCCcccc---ccccceeEEE----EEEcC--EEEEEEecCCCCCC---------
Q 029446 13 FGNSEMRVVMLGLDAAGKTTILYKLHIGEVLST---VPTIGFNVEK----VQYKN--VIFTVWDVGGQEKL--------- 74 (193)
Q Consensus 13 ~~~~~~~v~v~G~~~~GKssli~~l~~~~~~~~---~~t~~~~~~~----~~~~~--~~~~i~D~~g~~~~--------- 74 (193)
.....++++|+|++|+|||||+|.+.+..+... ..+.+..... .+... ..+.++|++|-...
T Consensus 38 ~~Gei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~ 117 (427)
T 2qag_B 38 SQGFCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKP 117 (427)
T ss_dssp C-CCEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHH
T ss_pred cCCCeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhH
Confidence 334456799999999999999999998653211 1111111111 12122 37899999985432
Q ss_pred -----HHhHHhhh-------------cC--CCE-EEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 029446 75 -----RPLWRHYF-------------NN--TDG-LIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA 133 (193)
Q Consensus 75 -----~~~~~~~~-------------~~--~d~-~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 133 (193)
...+..++ .. +|+ ++++.|+...-+ .....+...+. .+.|+|+|.||+|....
T Consensus 118 i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~--~~Dieilk~L~----~~~~vI~Vi~KtD~Lt~ 191 (427)
T 2qag_B 118 IVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLK--SLDLVTMKKLD----SKVNIIPIIAKADAISK 191 (427)
T ss_dssp HHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---C--HHHHHHHHHTC----SCSEEEEEESCGGGSCH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCC--HHHHHHHHHHh----hCCCEEEEEcchhccch
Confidence 11111111 11 233 555666653322 22222333332 47899999999998865
Q ss_pred CCHhHHHhhhCCCcCCCCceEEEEecc
Q 029446 134 MTPMEVCEGLGLFDLKNRKWHIQGTCA 160 (193)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (193)
.+...+.+.... .++..+++++.+|.
T Consensus 192 ~E~~~l~~~I~~-~L~~~gi~I~~is~ 217 (427)
T 2qag_B 192 SELTKFKIKITS-ELVSNGVQIYQFPT 217 (427)
T ss_dssp HHHHHHHHHHHH-HHBTTBCCCCCCC-
T ss_pred HHHHHHHHHHHH-HHHHcCCcEEecCC
Confidence 433333222211 12345666666664
No 219
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.93 E-value=2.9e-11 Score=88.97 Aligned_cols=111 Identities=13% Similarity=0.050 Sum_probs=71.7
Q ss_pred cCCCC-CCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCC
Q 029446 68 VGGQE-KLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLF 146 (193)
Q Consensus 68 ~~g~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~ 146 (193)
.||+. +........+.++|+++.|+|+.++.+..... +. + . ++|.++|+||+|+.+....+++.+.+.
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~--l~-l-----l-~k~~iivlNK~DL~~~~~~~~~~~~~~-- 72 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYG--VD-F-----S-RKETIILLNKVDIADEKTTKKWVEFFK-- 72 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTT--SC-C-----T-TSEEEEEEECGGGSCHHHHHHHHHHHH--
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChH--HH-h-----c-CCCcEEEEECccCCCHHHHHHHHHHHH--
Confidence 35654 34445666679999999999998876543210 11 1 1 789999999999987532233333221
Q ss_pred cCCCCceEEEEeccccCCCHHHHHHHHHHHHHhhhccCCCCCCcCCC
Q 029446 147 DLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEMRAAGYSSVGTSSF 193 (193)
Q Consensus 147 ~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~~~~~~~~~~~~~ 193 (193)
..+.++ .+||+++.|++++++.+.+.+..-.--|.+++|||||
T Consensus 73 ---~~g~~v-~iSa~~~~gi~~L~~~l~~~~~~v~~vG~~~vGKSsl 115 (262)
T 3cnl_A 73 ---KQGKRV-ITTHKGEPRKVLLKKLSFDRLARVLIVGVPNTGKSTI 115 (262)
T ss_dssp ---HTTCCE-EECCTTSCHHHHHHHHCCCTTCEEEEEESTTSSHHHH
T ss_pred ---HcCCeE-EEECCCCcCHHHHHHHHHHhhhheEEeCCCCCCHHHH
Confidence 223467 9999999999998887765531223348899999874
No 220
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.93 E-value=1.2e-09 Score=80.75 Aligned_cols=114 Identities=16% Similarity=0.218 Sum_probs=62.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccccc----------cccceeEEEE--EE--cCEEEEEEecCCCCC-------CH
Q 029446 17 EMRVVMLGLDAAGKTTILYKLHIGEVLSTV----------PTIGFNVEKV--QY--KNVIFTVWDVGGQEK-------LR 75 (193)
Q Consensus 17 ~~~v~v~G~~~~GKssli~~l~~~~~~~~~----------~t~~~~~~~~--~~--~~~~~~i~D~~g~~~-------~~ 75 (193)
.|+++++|+.|+|||||+|.+++-..+..+ .+.......+ +. -...+.++|++|-.. ..
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence 478999999999999999999974332110 1111111111 11 124789999998321 11
Q ss_pred HhH-----------H----------hhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC
Q 029446 76 PLW-----------R----------HYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM 134 (193)
Q Consensus 76 ~~~-----------~----------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~ 134 (193)
... . ..+..+++.++++|... ..++.....+...+.. . .++|+|++|.|.....
T Consensus 82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~-~gL~~lD~~~l~~L~~---~-~~vI~Vi~K~D~lt~~ 156 (270)
T 3sop_A 82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTG-HSLRPLDLEFMKHLSK---V-VNIIPVIAKADTMTLE 156 (270)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCS-SSCCHHHHHHHHHHHT---T-SEEEEEETTGGGSCHH
T ss_pred HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCC-CcCCHHHHHHHHHHHh---c-CcEEEEEeccccCCHH
Confidence 100 0 01123688999999642 1122222222233332 2 8899999999988753
Q ss_pred C
Q 029446 135 T 135 (193)
Q Consensus 135 ~ 135 (193)
+
T Consensus 157 e 157 (270)
T 3sop_A 157 E 157 (270)
T ss_dssp H
T ss_pred H
Confidence 3
No 221
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.87 E-value=1.4e-08 Score=78.99 Aligned_cols=159 Identities=15% Similarity=0.069 Sum_probs=85.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccccc-ccc-ce----eEEEEEEcC-EEEEEEecCCCCC----CHHh-HHhhhc
Q 029446 16 SEMRVVMLGLDAAGKTTILYKLHIGEVLSTV-PTI-GF----NVEKVQYKN-VIFTVWDVGGQEK----LRPL-WRHYFN 83 (193)
Q Consensus 16 ~~~~v~v~G~~~~GKssli~~l~~~~~~~~~-~t~-~~----~~~~~~~~~-~~~~i~D~~g~~~----~~~~-~~~~~~ 83 (193)
....++++|++|||||||+|.+.+-..+..+ .+. +. .....+... -.+.+||++|... .... ....+.
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~ 147 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFY 147 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGG
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHHHHHHHHHcCCC
Confidence 5568999999999999999999984332110 000 00 011112222 2588999998421 1111 122234
Q ss_pred CCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCC---------CCCCHhHHHhhhCCCc-----CC
Q 029446 84 NTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMK---------GAMTPMEVCEGLGLFD-----LK 149 (193)
Q Consensus 84 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~---------~~~~~~~~~~~~~~~~-----~~ 149 (193)
..+..++ ++...... +. ......+.. .+.|+++|.||.|+. +.....++.+.+.... ..
T Consensus 148 ~~~~~~~-lS~G~~~k-qr-v~la~aL~~----~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~ 220 (413)
T 1tq4_A 148 EYDFFII-ISATRFKK-ND-IDIAKAISM----MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFREN 220 (413)
T ss_dssp GCSEEEE-EESSCCCH-HH-HHHHHHHHH----TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHT
T ss_pred ccCCeEE-eCCCCccH-HH-HHHHHHHHh----cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 4566555 77763111 11 112222222 367999999999865 1222222222111100 00
Q ss_pred -CCceEEEEecc--ccCCCHHHHHHHHHHHHHhhh
Q 029446 150 -NRKWHIQGTCA--LKGDGLYEGLDWLASTLKEMR 181 (193)
Q Consensus 150 -~~~~~~~~~Sa--~~~~gi~~~~~~l~~~~~~~~ 181 (193)
.....++.+|+ .++.|++++.+.+.+.+.+..
T Consensus 221 g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~ 255 (413)
T 1tq4_A 221 GIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYK 255 (413)
T ss_dssp TCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGG
T ss_pred CCCCCcEEEEecCcCCccCHHHHHHHHHHhCccch
Confidence 01125788999 566679999999988875443
No 222
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.85 E-value=6e-10 Score=85.81 Aligned_cols=113 Identities=9% Similarity=0.063 Sum_probs=64.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC------ccccccccceeE--EEEEEcCEEEEEEecCCCCCCH--------HhHHh
Q 029446 17 EMRVVMLGLDAAGKTTILYKLHIGE------VLSTVPTIGFNV--EKVQYKNVIFTVWDVGGQEKLR--------PLWRH 80 (193)
Q Consensus 17 ~~~v~v~G~~~~GKssli~~l~~~~------~~~~~~t~~~~~--~~~~~~~~~~~i~D~~g~~~~~--------~~~~~ 80 (193)
..+++++|.+|+|||||+|++.+.. .....+..+.+. ..+... ..+.++||||-.... .....
T Consensus 160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~-~~~~liDtPG~~~~~~~~~~l~~~~l~~ 238 (368)
T 3h2y_A 160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLD-EESSLYDTPGIINHHQMAHYVGKQSLKL 238 (368)
T ss_dssp TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESS-SSCEEEECCCBCCTTSGGGGSCHHHHHH
T ss_pred cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEec-CCeEEEeCCCcCcHHHHHHHhhHHHHHH
Confidence 4689999999999999999998752 111122222222 222222 238999999943221 11112
Q ss_pred h--hcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC
Q 029446 81 Y--FNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT 135 (193)
Q Consensus 81 ~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 135 (193)
+ ....+.++++++......+..+.. .+.+. ..+.|+++++||.|..+...
T Consensus 239 ~~~~~~i~~~~~~l~~~~~~~~g~l~~--~d~l~---~~~~~~~~v~nk~d~~~~~~ 290 (368)
T 3h2y_A 239 ITPTKEIKPMVFQLNEEQTLFFSGLAR--FDYVS---GGRRAFTCHFSNRLTIHRTK 290 (368)
T ss_dssp HSCSSCCCCEEEEECTTEEEEETTTEE--EEEEE---SSSEEEEEEECTTSCEEEEE
T ss_pred hccccccCceEEEEcCCCEEEEcceEE--EEEec---CCCceEEEEecCcccccccc
Confidence 1 256889999998842211111000 11111 24689999999999877543
No 223
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.82 E-value=1.8e-09 Score=79.36 Aligned_cols=55 Identities=24% Similarity=0.244 Sum_probs=35.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccccccccceeEE--EEEEcCEEEEEEecCCCCC
Q 029446 18 MRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVE--KVQYKNVIFTVWDVGGQEK 73 (193)
Q Consensus 18 ~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~--~~~~~~~~~~i~D~~g~~~ 73 (193)
++++++|.+|+|||||+|++.+.....+.++.+.+.. .+.. ...+.+|||||...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~-~~~~~l~DtpG~~~ 156 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFSL-ENGVKILDTPGILY 156 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----------CCSCEEEC-TTSCEEESSCEECC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceEEEEe-CCCEEEEECCCccc
Confidence 7999999999999999999998876554444444322 2222 34789999999553
No 224
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.74 E-value=6.5e-09 Score=77.22 Aligned_cols=58 Identities=19% Similarity=0.312 Sum_probs=37.6
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccccccccceeE--EEEEEcCEEEEEEecCCCC
Q 029446 14 GNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNV--EKVQYKNVIFTVWDVGGQE 72 (193)
Q Consensus 14 ~~~~~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~--~~~~~~~~~~~i~D~~g~~ 72 (193)
....++++++|.+|+|||||+|++.+.....+.++.+.+. ..+.. +..+.+|||||-.
T Consensus 117 ~~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~-~~~~~l~DtpG~~ 176 (282)
T 1puj_A 117 KPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKV-GKELELLDTPGIL 176 (282)
T ss_dssp CCCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEEE-TTTEEEEECCCCC
T ss_pred CCCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEEEEe-CCCEEEEECcCcC
Confidence 3567899999999999999999999877554433333322 12222 3468999999943
No 225
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.73 E-value=1.1e-10 Score=87.54 Aligned_cols=105 Identities=17% Similarity=0.147 Sum_probs=67.3
Q ss_pred HHhhhcCCCEEEEEEECCChhhHHH-HHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC----HhHHHhhhCCCcCCCCc
Q 029446 78 WRHYFNNTDGLIYVVDSLDRERIGK-AKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT----PMEVCEGLGLFDLKNRK 152 (193)
Q Consensus 78 ~~~~~~~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~----~~~~~~~~~~~~~~~~~ 152 (193)
.+..+.++|.+++|+|+.++..-.. +..++... .. .++|.++|+||+|+.++.. .+++.+.+ +..+
T Consensus 80 ~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~-~~---~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y-----~~~g 150 (307)
T 1t9h_A 80 IRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLV-EA---NDIQPIICITKMDLIEDQDTEDTIQAYAEDY-----RNIG 150 (307)
T ss_dssp TTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHH-HT---TTCEEEEEEECGGGCCCHHHHHHHHHHHHHH-----HHHT
T ss_pred hHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHH-HH---CCCCEEEEEECCccCchhhhHHHHHHHHHHH-----HhCC
Confidence 3346789999999999986653333 33333222 22 5788999999999987632 23333332 2234
Q ss_pred eEEEEeccccCCCHHHHHHHHHHHHHhhhccCCCCCCcCCC
Q 029446 153 WHIQGTCALKGDGLYEGLDWLASTLKEMRAAGYSSVGTSSF 193 (193)
Q Consensus 153 ~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~~~~~~~~~~~~~ 193 (193)
++++.+||.++.|++++++.....+ ..--|.+++|||+|
T Consensus 151 ~~v~~~sa~~~~g~~~L~~~~~G~~--~~lvG~sG~GKSTL 189 (307)
T 1t9h_A 151 YDVYLTSSKDQDSLADIIPHFQDKT--TVFAGQSGVGKSSL 189 (307)
T ss_dssp CCEEECCHHHHTTCTTTGGGGTTSE--EEEEESHHHHHHHH
T ss_pred CeEEEEecCCCCCHHHHHhhcCCCE--EEEECCCCCCHHHH
Confidence 5799999999999888766542211 11237778887763
No 226
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.63 E-value=1.4e-08 Score=77.54 Aligned_cols=101 Identities=22% Similarity=0.135 Sum_probs=64.0
Q ss_pred hhcCCCEEEEEEECCChhhHHH-HHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC---HhHHHhhhCCCcCCCCceEEE
Q 029446 81 YFNNTDGLIYVVDSLDRERIGK-AKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT---PMEVCEGLGLFDLKNRKWHIQ 156 (193)
Q Consensus 81 ~~~~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~---~~~~~~~~~~~~~~~~~~~~~ 156 (193)
...++|.+++|.+. .|..-.+ +..++...-. .++|.++|+||+|+.+... .+++...+ +..+++++
T Consensus 127 i~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~~----~~~~~iivlNK~DL~~~~~~~~~~~~~~~y-----~~~G~~v~ 196 (358)
T 2rcn_A 127 IAANIDQIVIVSAI-LPELSLNIIDRYLVGCET----LQVEPLIVLNKIDLLDDEGMDFVNEQMDIY-----RNIGYRVL 196 (358)
T ss_dssp EEECCCEEEEEEES-TTTCCHHHHHHHHHHHHH----HTCEEEEEEECGGGCCHHHHHHHHHHHHHH-----HTTTCCEE
T ss_pred HHhcCCEEEEEEeC-CCCCCHHHHHHHHHHHHh----cCCCEEEEEECccCCCchhHHHHHHHHHHH-----HhCCCcEE
Confidence 45899999988665 4543333 3333322211 4678899999999987532 11222222 34556799
Q ss_pred EeccccCCCHHHHHHHHHHHHHhhhccCCCCCCcCCC
Q 029446 157 GTCALKGDGLYEGLDWLASTLKEMRAAGYSSVGTSSF 193 (193)
Q Consensus 157 ~~Sa~~~~gi~~~~~~l~~~~~~~~~~~~~~~~~~~~ 193 (193)
.+||.++.|++++...+...+ ..--|.+++|||+|
T Consensus 197 ~~Sa~~~~gl~~L~~~~~G~~--~~lvG~sG~GKSTL 231 (358)
T 2rcn_A 197 MVSSHTQDGLKPLEEALTGRI--SIFAGQSGVGKSSL 231 (358)
T ss_dssp ECBTTTTBTHHHHHHHHTTSE--EEEECCTTSSHHHH
T ss_pred EEecCCCcCHHHHHHhcCCCE--EEEECCCCccHHHH
Confidence 999999999998876542211 11238999999864
No 227
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.55 E-value=5.3e-07 Score=70.65 Aligned_cols=111 Identities=20% Similarity=0.173 Sum_probs=65.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhc------CCcc----cc------------ccccceeEEEE-----------------
Q 029446 16 SEMRVVMLGLDAAGKTTILYKLHI------GEVL----ST------------VPTIGFNVEKV----------------- 56 (193)
Q Consensus 16 ~~~~v~v~G~~~~GKssli~~l~~------~~~~----~~------------~~t~~~~~~~~----------------- 56 (193)
....|+++|.+|+||||++..|.. .... +. ....++.....
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 467899999999999999998873 1110 00 00112211110
Q ss_pred EEcCEEEEEEecCCCCCCHHhHH------hhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCC
Q 029446 57 QYKNVIFTVWDVGGQEKLRPLWR------HYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDM 130 (193)
Q Consensus 57 ~~~~~~~~i~D~~g~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl 130 (193)
...+..+.++||+|......... .....+|.+++|+|+.......+.. ..+... -.+..+|+||.|.
T Consensus 179 ~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~a---~~f~~~----~~i~gVIlTKlD~ 251 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQA---LAFKEA----TPIGSIIVTKLDG 251 (443)
T ss_dssp HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHH---HHHHHS----CTTEEEEEECCSS
T ss_pred HhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHHH---HHHHhh----CCCeEEEEECCCC
Confidence 01247899999999654322111 1123689999999997654433322 233221 2345699999998
Q ss_pred CCC
Q 029446 131 KGA 133 (193)
Q Consensus 131 ~~~ 133 (193)
...
T Consensus 252 ~~~ 254 (443)
T 3dm5_A 252 SAK 254 (443)
T ss_dssp CSS
T ss_pred ccc
Confidence 754
No 228
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.47 E-value=2.2e-07 Score=75.31 Aligned_cols=59 Identities=19% Similarity=0.128 Sum_probs=41.2
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCcc-cccc-ccceeEEEEE-------EcCEEEEEEecCCCC
Q 029446 14 GNSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVP-TIGFNVEKVQ-------YKNVIFTVWDVGGQE 72 (193)
Q Consensus 14 ~~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~-t~~~~~~~~~-------~~~~~~~i~D~~g~~ 72 (193)
......|+|+|.+|+|||||+|+|.+.... .... |.+.+..... ..+..+.++||||-.
T Consensus 35 ~~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~ 102 (592)
T 1f5n_A 35 TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLG 102 (592)
T ss_dssp CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBC
T ss_pred cCCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcC
Confidence 456789999999999999999999987642 2222 2222222221 246789999999943
No 229
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.33 E-value=3.9e-07 Score=74.56 Aligned_cols=24 Identities=21% Similarity=0.322 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 029446 18 MRVVMLGLDAAGKTTILYKLHIGE 41 (193)
Q Consensus 18 ~~v~v~G~~~~GKssli~~l~~~~ 41 (193)
..++|+|+.|||||||++.+.+-.
T Consensus 46 p~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 46 PAIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CCEECCCCTTSCHHHHHHHHHSCC
T ss_pred CeEEEECCCCChHHHHHHHHhCCC
Confidence 459999999999999999999864
No 230
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.33 E-value=8.4e-07 Score=69.63 Aligned_cols=109 Identities=20% Similarity=0.201 Sum_probs=64.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC------cc--ccc--------------------------cccce-eE--EEE-EE
Q 029446 17 EMRVVMLGLDAAGKTTILYKLHIGE------VL--STV--------------------------PTIGF-NV--EKV-QY 58 (193)
Q Consensus 17 ~~~v~v~G~~~~GKssli~~l~~~~------~~--~~~--------------------------~t~~~-~~--~~~-~~ 58 (193)
...|+++|.+|+||||+++.|.... .. ... .+... .. ..+ ..
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~ 178 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKF 178 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999987621 10 000 00000 00 000 01
Q ss_pred cCEEEEEEecCCCCCCHHhHHh------hhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCC-e-EEEEEeCCCC
Q 029446 59 KNVIFTVWDVGGQEKLRPLWRH------YFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNS-V-ILVFANKQDM 130 (193)
Q Consensus 59 ~~~~~~i~D~~g~~~~~~~~~~------~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-p-~ivv~nK~Dl 130 (193)
....+.++||||.......... .+..+|.+++|+|+..... .. .....+ . ... | ..+|+||.|.
T Consensus 179 ~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~--~~-~~~~~~-~----~~~~~i~gvVlnK~D~ 250 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ--AG-IQAKAF-K----EAVGEIGSIIVTKLDG 250 (432)
T ss_dssp SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG--HH-HHHHHH-H----TTSCSCEEEEEECSSS
T ss_pred hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH--HH-HHHHHH-h----hcccCCeEEEEeCCCC
Confidence 4578999999997654322211 1126899999999975432 21 222222 2 123 4 7899999998
Q ss_pred CCC
Q 029446 131 KGA 133 (193)
Q Consensus 131 ~~~ 133 (193)
...
T Consensus 251 ~~~ 253 (432)
T 2v3c_C 251 SAK 253 (432)
T ss_dssp CST
T ss_pred ccc
Confidence 653
No 231
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.32 E-value=3.3e-06 Score=66.09 Aligned_cols=111 Identities=19% Similarity=0.184 Sum_probs=64.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhc------CCcc----c-c-----------ccccceeEEEE-----------------
Q 029446 16 SEMRVVMLGLDAAGKTTILYKLHI------GEVL----S-T-----------VPTIGFNVEKV----------------- 56 (193)
Q Consensus 16 ~~~~v~v~G~~~~GKssli~~l~~------~~~~----~-~-----------~~t~~~~~~~~----------------- 56 (193)
....|+++|++|+||||++..|.. .... + + ....++.....
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 356789999999999999998873 1110 0 0 00111111110
Q ss_pred EEcCEEEEEEecCCCCC--CHH----hHHh--hhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCC
Q 029446 57 QYKNVIFTVWDVGGQEK--LRP----LWRH--YFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQ 128 (193)
Q Consensus 57 ~~~~~~~~i~D~~g~~~--~~~----~~~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~ 128 (193)
......+.++||||... ... .... ..-..+.+++|+|+...+...++...+.+. -.+..+|+||.
T Consensus 176 ~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~~f~~~-------~~~~gVIlTKl 248 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLASRFHQA-------SPIGSVIITKM 248 (433)
T ss_dssp TTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHHHHHHH-------CSSEEEEEECG
T ss_pred HhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHHHHHhcc-------cCCcEEEEecc
Confidence 01257889999999654 111 1111 112579999999997654433333333332 13467999999
Q ss_pred CCCCC
Q 029446 129 DMKGA 133 (193)
Q Consensus 129 Dl~~~ 133 (193)
|....
T Consensus 249 D~~a~ 253 (433)
T 3kl4_A 249 DGTAK 253 (433)
T ss_dssp GGCSC
T ss_pred ccccc
Confidence 97753
No 232
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.07 E-value=6.4e-06 Score=61.52 Aligned_cols=135 Identities=18% Similarity=0.120 Sum_probs=74.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc------CCcc----c-ccc-----------ccceeEEE-----------------EE
Q 029446 17 EMRVVMLGLDAAGKTTILYKLHI------GEVL----S-TVP-----------TIGFNVEK-----------------VQ 57 (193)
Q Consensus 17 ~~~v~v~G~~~~GKssli~~l~~------~~~~----~-~~~-----------t~~~~~~~-----------------~~ 57 (193)
.-.++++|.+|+||||++..+.. +... + +.+ ..++.+.. ..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 44688899999999999998863 2111 0 000 01111110 01
Q ss_pred EcCEEEEEEecCCCCC--CHHhHH------hhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCe-EEEEEeCC
Q 029446 58 YKNVIFTVWDVGGQEK--LRPLWR------HYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSV-ILVFANKQ 128 (193)
Q Consensus 58 ~~~~~~~i~D~~g~~~--~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~ 128 (193)
.....+.++||||... ...... .....+|.+++|+|+..... .......+.. ..| ..+|+||.
T Consensus 178 ~~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~~~-----~~~i~gvVlnk~ 249 (297)
T 1j8m_F 178 SEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQK---AYDLASKFNQ-----ASKIGTIIITKM 249 (297)
T ss_dssp HTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGG---HHHHHHHHHH-----TCTTEEEEEECG
T ss_pred hCCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchHH---HHHHHHHHHh-----hCCCCEEEEeCC
Confidence 1456899999999877 432211 12347999999999864322 2222233221 234 67899999
Q ss_pred CCCCCCC-HhHHHhhhCCCcCCCCceEEEEeccccCCCHHHH
Q 029446 129 DMKGAMT-PMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEG 169 (193)
Q Consensus 129 Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~ 169 (193)
|...... ...+... .+.|+..++ .|++++++
T Consensus 250 D~~~~~g~~~~~~~~--------~~~pi~~i~--~Ge~v~dl 281 (297)
T 1j8m_F 250 DGTAKGGGALSAVAA--------TGATIKFIG--TGEKIDEL 281 (297)
T ss_dssp GGCTTHHHHHHHHHT--------TTCCEEEEE--CSSSTTCE
T ss_pred CCCcchHHHHHHHHH--------HCcCEEEEe--CCCChhhc
Confidence 9764311 1122222 234565555 56766543
No 233
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=97.98 E-value=7.1e-07 Score=70.92 Aligned_cols=95 Identities=27% Similarity=0.308 Sum_probs=57.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEEEE----EcCEEEEEEecCCCCC--CHHhH--------Hh
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQ----YKNVIFTVWDVGGQEK--LRPLW--------RH 80 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~----~~~~~~~i~D~~g~~~--~~~~~--------~~ 80 (193)
....+|+++|.+|+||||+.++|.........++..++...+. .......+||..|.+. .+..+ ..
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~~ 116 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRK 116 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4668999999999999999999976433221222222211110 0123456889888732 23332 45
Q ss_pred hhcCCCEEEEEEECCChhhHHHHHHHHHHH
Q 029446 81 YFNNTDGLIYVVDSLDRERIGKAKQEFQAI 110 (193)
Q Consensus 81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~ 110 (193)
++...++.++|+|.++. +.+....|+..+
T Consensus 117 ~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~ 145 (469)
T 1bif_A 117 FLSEEGGHVAVFDATNT-TRERRAMIFNFG 145 (469)
T ss_dssp HHHTTCCSEEEEESCCC-SHHHHHHHHHHH
T ss_pred HHHhCCCCEEEEeCCCC-CHHHHHHHHHHH
Confidence 56667888999999977 344444444443
No 234
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.86 E-value=2.6e-05 Score=61.26 Aligned_cols=27 Identities=15% Similarity=0.076 Sum_probs=23.2
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcC
Q 029446 14 GNSEMRVVMLGLDAAGKTTILYKLHIG 40 (193)
Q Consensus 14 ~~~~~~v~v~G~~~~GKssli~~l~~~ 40 (193)
..+..-|.|+|.+++|||+|+|.+.+.
T Consensus 64 ~~~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 64 DKEVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp TSBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCceEEEEEECCCCCcHHHHHHHHhhh
Confidence 345678999999999999999999863
No 235
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.80 E-value=0.0001 Score=50.64 Aligned_cols=108 Identities=10% Similarity=0.028 Sum_probs=49.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEEEEEcCEEEEEEecCCCCCCHHhHHhh----hcCCCEEEEEEE
Q 029446 18 MRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHY----FNNTDGLIYVVD 93 (193)
Q Consensus 18 ~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~----~~~~d~~i~v~d 93 (193)
..++++|.+|+|||||++++..... ..+.....+......+ -+|.+|.+.++.....+ ........++.+
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~-----~~g~~v~~i~~~~~~~-~id~~g~Ds~~~~~~G~~~v~i~~~~~~~~~~~ 80 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALC-----ARGIRPGLIKHTHHDM-DVDKPGKDSYELRKAGAAQTIVASQQRWALMTE 80 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH-----HTTCCEEEEEECCC-------------CHHHHTCSEEEEECSSEEEEEEE
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhcc-----ccCCceeEEeeCCCcc-ccCCCCCceEEEEeCCcceeecccchhheeeee
Confidence 4689999999999999999986421 1223333444433332 24666655443222111 011122223333
Q ss_pred C--CChhhHHHHHHHHHHH------HcCCCCCCCeEEEEEeCCCCC
Q 029446 94 S--LDRERIGKAKQEFQAI------IKDPFMLNSVILVFANKQDMK 131 (193)
Q Consensus 94 ~--~~~~s~~~~~~~~~~~------~~~~~~~~~p~ivv~nK~Dl~ 131 (193)
. ..+..+..+...+... +........|.|+|.+|.+..
T Consensus 81 ~~~~~~~~L~~ll~r~~~~~~D~ilIEg~k~~~~pki~v~~~~~~~ 126 (174)
T 1np6_A 81 TPDEEELDLQFLASRMDTSKLDLILVEGFKHEEIAKIVLFRDGAGH 126 (174)
T ss_dssp CSSSCCCCHHHHHHHSCGGGCSEEEEESCSSCCSEEEEEECTTSSC
T ss_pred ccCCchhhHHHHHHhcCCCcchHHHHHHHhhcCCCEEEEEecccCC
Confidence 1 1224455554332211 112233568999999998743
No 236
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.77 E-value=0.00029 Score=52.79 Aligned_cols=121 Identities=18% Similarity=0.213 Sum_probs=64.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC------cc----ccc------------cccceeEEE---------E--------EE
Q 029446 18 MRVVMLGLDAAGKTTILYKLHIGE------VL----STV------------PTIGFNVEK---------V--------QY 58 (193)
Q Consensus 18 ~~v~v~G~~~~GKssli~~l~~~~------~~----~~~------------~t~~~~~~~---------~--------~~ 58 (193)
-.++++|++|+||||++..+.... .. +.. ...++.+.. + ..
T Consensus 105 ~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~~a~~ 184 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAHALA 184 (306)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHHHh
Confidence 468899999999999998886421 10 000 001111110 0 01
Q ss_pred cCEEEEEEecCCCCCCHHhHH-------hhh-----cCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEe
Q 029446 59 KNVIFTVWDVGGQEKLRPLWR-------HYF-----NNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFAN 126 (193)
Q Consensus 59 ~~~~~~i~D~~g~~~~~~~~~-------~~~-----~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~n 126 (193)
....+.+.||||......... ..+ ..++.+++|+|+... .+.+. ....+... .+. .-+|+|
T Consensus 185 ~~~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~--~~~l~-~a~~~~~~---~~i-~gvVlT 257 (306)
T 1vma_A 185 RNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG--QNGLV-QAKIFKEA---VNV-TGIILT 257 (306)
T ss_dssp TTCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH--HHHHH-HHHHHHHH---SCC-CEEEEE
T ss_pred cCCCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCC--HHHHH-HHHHHHhc---CCC-CEEEEe
Confidence 356799999999754433211 111 247899999998633 12222 22222221 111 246789
Q ss_pred CCCCCCCCC-HhHHHhhhCC
Q 029446 127 KQDMKGAMT-PMEVCEGLGL 145 (193)
Q Consensus 127 K~Dl~~~~~-~~~~~~~~~~ 145 (193)
|.|....-. ...+....+.
T Consensus 258 k~D~~~~gG~~l~~~~~~~~ 277 (306)
T 1vma_A 258 KLDGTAKGGITLAIARELGI 277 (306)
T ss_dssp CGGGCSCTTHHHHHHHHHCC
T ss_pred CCCCccchHHHHHHHHHHCC
Confidence 999765432 2344555543
No 237
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.77 E-value=5.7e-05 Score=59.31 Aligned_cols=109 Identities=25% Similarity=0.257 Sum_probs=62.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHh-------cCCcc----cc-cc-----------ccceeEEE-----------------E
Q 029446 17 EMRVVMLGLDAAGKTTILYKLH-------IGEVL----ST-VP-----------TIGFNVEK-----------------V 56 (193)
Q Consensus 17 ~~~v~v~G~~~~GKssli~~l~-------~~~~~----~~-~~-----------t~~~~~~~-----------------~ 56 (193)
...|+++|.+|+||||++..|. +.... +. .+ ..++.+.. .
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~~ 179 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEA 179 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHHH
Confidence 4578889999999999988886 32211 00 00 01111111 0
Q ss_pred EEcCEEEEEEecCCCCCCHH-hHH-----hhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCe-EEEEEeCCC
Q 029446 57 QYKNVIFTVWDVGGQEKLRP-LWR-----HYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSV-ILVFANKQD 129 (193)
Q Consensus 57 ~~~~~~~~i~D~~g~~~~~~-~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D 129 (193)
......+.++||||...... ... .....++.+++|+|+......-.. ...+.. ..+ .-+|+||.|
T Consensus 180 ~~~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~~~~---~~~f~~-----~l~i~gvVlnK~D 251 (433)
T 2xxa_A 180 KLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAANT---AKAFNE-----ALPLTGVVLTKVD 251 (433)
T ss_dssp HHTTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTHHHH---HHHHHH-----HSCCCCEEEECTT
T ss_pred HhCCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHHHHH---HHHHhc-----cCCCeEEEEecCC
Confidence 11367899999999765422 221 123468999999999754332222 222211 122 237999999
Q ss_pred CCCC
Q 029446 130 MKGA 133 (193)
Q Consensus 130 l~~~ 133 (193)
....
T Consensus 252 ~~~~ 255 (433)
T 2xxa_A 252 GDAR 255 (433)
T ss_dssp SSSC
T ss_pred CCcc
Confidence 7654
No 238
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.74 E-value=5.4e-05 Score=57.29 Aligned_cols=137 Identities=18% Similarity=0.183 Sum_probs=73.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc----------c------------ccccceeEEEE----------------
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHIGEVLS----------T------------VPTIGFNVEKV---------------- 56 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~~----------~------------~~t~~~~~~~~---------------- 56 (193)
...--++++|+.||||||+++.+.+...+. . ....++.+...
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~ 206 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQH 206 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHH
Confidence 345689999999999999999987521110 0 00111111100
Q ss_pred -EEcCEEEEEEecCCCCCCHHhHHhh------hcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCC
Q 029446 57 -QYKNVIFTVWDVGGQEKLRPLWRHY------FNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQD 129 (193)
Q Consensus 57 -~~~~~~~~i~D~~g~~~~~~~~~~~------~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 129 (193)
......+.+.|++|........... .-..|-.++++|+......-+ ....+... ...-++++||.|
T Consensus 207 ~~~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~~~~~---~~~~~~~~----~~it~iilTKlD 279 (328)
T 3e70_C 207 AKARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGNAIVE---QARQFNEA----VKIDGIILTKLD 279 (328)
T ss_dssp HHHHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHH---HHHHHHHH----SCCCEEEEECGG
T ss_pred HHhccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHHHHHH---HHHHHHHh----cCCCEEEEeCcC
Confidence 0024567789999965432211111 124789999999865543322 23333211 012378899999
Q ss_pred CCCCCC-HhHHHhhhCCCcCCCCceEEEEeccccCCCHHH
Q 029446 130 MKGAMT-PMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYE 168 (193)
Q Consensus 130 l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 168 (193)
...... .-.+....+. |+..++ +|+++++
T Consensus 280 ~~a~~G~~l~~~~~~~~--------pi~~i~--~Ge~v~d 309 (328)
T 3e70_C 280 ADARGGAALSISYVIDA--------PILFVG--VGQGYDD 309 (328)
T ss_dssp GCSCCHHHHHHHHHHTC--------CEEEEE--CSSSTTC
T ss_pred CccchhHHHHHHHHHCC--------CEEEEe--CCCCccc
Confidence 744321 1223343433 556565 6776654
No 239
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.69 E-value=4e-05 Score=60.81 Aligned_cols=23 Identities=35% Similarity=0.556 Sum_probs=20.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 029446 17 EMRVVMLGLDAAGKTTILYKLHI 39 (193)
Q Consensus 17 ~~~v~v~G~~~~GKssli~~l~~ 39 (193)
.-.++|+|..|||||||++.+.+
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHHH
Confidence 44789999999999999999875
No 240
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.52 E-value=5.2e-05 Score=52.26 Aligned_cols=23 Identities=30% Similarity=0.518 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q 029446 18 MRVVMLGLDAAGKTTILYKLHIG 40 (193)
Q Consensus 18 ~~v~v~G~~~~GKssli~~l~~~ 40 (193)
.+++++|++|||||||++.+.+-
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999998764
No 241
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.41 E-value=0.001 Score=52.01 Aligned_cols=68 Identities=15% Similarity=0.137 Sum_probs=38.6
Q ss_pred cCEEEEEEecCCCCCCHH-hHH-----hhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 029446 59 KNVIFTVWDVGGQEKLRP-LWR-----HYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKG 132 (193)
Q Consensus 59 ~~~~~~i~D~~g~~~~~~-~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 132 (193)
....+.++||||...... ... ...-.++.+++|+|+...... ......+... -...-+|+||.|...
T Consensus 179 ~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tgq~a---v~~a~~f~~~----l~i~GVIlTKlD~~~ 251 (425)
T 2ffh_A 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEA---LSVARAFDEK----VGVTGLVLTKLDGDA 251 (425)
T ss_dssp TTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTTHH---HHHHHHHHHH----TCCCEEEEESGGGCS
T ss_pred CCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccchHHH---HHHHHHHHhc----CCceEEEEeCcCCcc
Confidence 356799999999765422 111 112258999999998643222 2222222211 011357889999754
Q ss_pred C
Q 029446 133 A 133 (193)
Q Consensus 133 ~ 133 (193)
.
T Consensus 252 ~ 252 (425)
T 2ffh_A 252 R 252 (425)
T ss_dssp S
T ss_pred c
Confidence 3
No 242
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=97.40 E-value=0.0013 Score=45.85 Aligned_cols=69 Identities=10% Similarity=0.028 Sum_probs=46.8
Q ss_pred CEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCC-CCCCCeEEEEEeCCCCCC
Q 029446 60 NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDP-FMLNSVILVFANKQDMKG 132 (193)
Q Consensus 60 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~ 132 (193)
...+.++|+|+.. .......+..+|.+++++..+... ......+..+.... ...+.++.+|+|+.|...
T Consensus 75 ~yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~ 144 (206)
T 4dzz_A 75 DYDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMA 144 (206)
T ss_dssp TSSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTE
T ss_pred CCCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCc
Confidence 5789999999876 334455667899999999887443 45555444443321 124567799999999543
No 243
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.34 E-value=0.00011 Score=50.66 Aligned_cols=22 Identities=27% Similarity=0.421 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 029446 19 RVVMLGLDAAGKTTILYKLHIG 40 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~~ 40 (193)
.++++|++|||||||++.+.+.
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 6899999999999999999864
No 244
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=97.31 E-value=0.0062 Score=45.32 Aligned_cols=82 Identities=12% Similarity=0.113 Sum_probs=52.2
Q ss_pred CEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEE-EEEeCCCCCCCCCHhH
Q 029446 60 NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVIL-VFANKQDMKGAMTPME 138 (193)
Q Consensus 60 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i-vv~nK~Dl~~~~~~~~ 138 (193)
.+.+.++|+|+...... ....+..+|.+++++..+ ..++..+...+..+.......+.+++ +|+|+.+.. ...++
T Consensus 156 ~yD~ViiD~p~~~~~~~-~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~~--~~~~~ 231 (307)
T 3end_A 156 DTDVVIFDVLGDVVCGG-FAAPLQHADQAVVVTAND-FDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRAT--DEVDR 231 (307)
T ss_dssp SCSEEEEEECCSSCCGG-GGGGGGTCSEEEEEECSS-HHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSCC--HHHHH
T ss_pred cCCEEEEeCCCccchHH-HHHHHHHCCEEEEEecCc-HHHHHHHHHHHHHHHHhhhcCCCceEEEEEecCCcH--HHHHH
Confidence 46899999988654332 233457899999999875 55566666555555443223456665 999999832 23345
Q ss_pred HHhhhCC
Q 029446 139 VCEGLGL 145 (193)
Q Consensus 139 ~~~~~~~ 145 (193)
+.+.++.
T Consensus 232 ~~~~~g~ 238 (307)
T 3end_A 232 FCKETNF 238 (307)
T ss_dssp HHHHHTC
T ss_pred HHHHcCC
Confidence 5555543
No 245
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.30 E-value=0.00012 Score=51.25 Aligned_cols=21 Identities=48% Similarity=0.604 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 029446 19 RVVMLGLDAAGKTTILYKLHI 39 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~ 39 (193)
.++|+|++|||||||++.+.+
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999999976
No 246
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.28 E-value=0.00015 Score=51.02 Aligned_cols=27 Identities=22% Similarity=0.268 Sum_probs=23.1
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcC
Q 029446 14 GNSEMRVVMLGLDAAGKTTILYKLHIG 40 (193)
Q Consensus 14 ~~~~~~v~v~G~~~~GKssli~~l~~~ 40 (193)
......|+|+|++|||||||++.+.+-
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 346679999999999999999988754
No 247
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.23 E-value=0.00017 Score=49.86 Aligned_cols=24 Identities=25% Similarity=0.196 Sum_probs=21.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q 029446 17 EMRVVMLGLDAAGKTTILYKLHIG 40 (193)
Q Consensus 17 ~~~v~v~G~~~~GKssli~~l~~~ 40 (193)
.-.++++|++||||||+++.+.+.
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 346899999999999999999875
No 248
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.22 E-value=0.00017 Score=49.91 Aligned_cols=21 Identities=38% Similarity=0.585 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 029446 20 VVMLGLDAAGKTTILYKLHIG 40 (193)
Q Consensus 20 v~v~G~~~~GKssli~~l~~~ 40 (193)
++++|+.||||||+++.+.+.
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 789999999999999999864
No 249
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.21 E-value=0.00019 Score=49.19 Aligned_cols=26 Identities=15% Similarity=0.146 Sum_probs=21.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCC
Q 029446 16 SEMRVVMLGLDAAGKTTILYKLHIGE 41 (193)
Q Consensus 16 ~~~~v~v~G~~~~GKssli~~l~~~~ 41 (193)
..-.+++.|++|+|||||++.+.+..
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 34578999999999999999887643
No 250
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.20 E-value=0.00018 Score=50.33 Aligned_cols=23 Identities=22% Similarity=0.254 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q 029446 18 MRVVMLGLDAAGKTTILYKLHIG 40 (193)
Q Consensus 18 ~~v~v~G~~~~GKssli~~l~~~ 40 (193)
--++++|++|||||||++.+.+.
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 35899999999999999999864
No 251
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.19 E-value=0.00019 Score=50.52 Aligned_cols=23 Identities=35% Similarity=0.365 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 029446 19 RVVMLGLDAAGKTTILYKLHIGE 41 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~~~ 41 (193)
-++++|+.|||||||++.+.+-.
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 57899999999999999988643
No 252
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.19 E-value=0.00019 Score=49.01 Aligned_cols=21 Identities=33% Similarity=0.436 Sum_probs=18.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 029446 19 RVVMLGLDAAGKTTILYKLHI 39 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~ 39 (193)
-++++|++|||||||++.+..
T Consensus 11 i~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHcc
Confidence 578999999999999997553
No 253
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.15 E-value=0.00022 Score=50.68 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q 029446 18 MRVVMLGLDAAGKTTILYKLHIG 40 (193)
Q Consensus 18 ~~v~v~G~~~~GKssli~~l~~~ 40 (193)
-.++|+|+.|||||||++.+.+-
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 35899999999999999999864
No 254
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.14 E-value=0.00022 Score=50.76 Aligned_cols=24 Identities=17% Similarity=0.241 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 029446 18 MRVVMLGLDAAGKTTILYKLHIGE 41 (193)
Q Consensus 18 ~~v~v~G~~~~GKssli~~l~~~~ 41 (193)
--++|+|+.|||||||++.+.+..
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 367899999999999999998743
No 255
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.13 E-value=0.0003 Score=50.81 Aligned_cols=23 Identities=30% Similarity=0.520 Sum_probs=21.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHh
Q 029446 16 SEMRVVMLGLDAAGKTTILYKLH 38 (193)
Q Consensus 16 ~~~~v~v~G~~~~GKssli~~l~ 38 (193)
+...|+|+|++||||||+++.+.
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 45689999999999999999998
No 256
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.10 E-value=0.00027 Score=47.63 Aligned_cols=24 Identities=33% Similarity=0.289 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 029446 18 MRVVMLGLDAAGKTTILYKLHIGE 41 (193)
Q Consensus 18 ~~v~v~G~~~~GKssli~~l~~~~ 41 (193)
=.++++|+.|||||||++.+.+..
T Consensus 34 e~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 368999999999999999998765
No 257
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=97.09 E-value=0.011 Score=41.58 Aligned_cols=67 Identities=10% Similarity=-0.035 Sum_probs=46.9
Q ss_pred CEEEEEEecCCC-CCCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 029446 60 NVIFTVWDVGGQ-EKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKG 132 (193)
Q Consensus 60 ~~~~~i~D~~g~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 132 (193)
...+.++|+|+. .... ....+..+|.+++++..+ ..++......+..+.... +.++.+|+|+.|...
T Consensus 67 ~yD~viiD~p~~~~~~~--~~~~l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~~---~~~~~vv~N~~~~~~ 134 (209)
T 3cwq_A 67 KYQNIVIDTQARPEDED--LEALADGCDLLVIPSTPD-ALALDALMLTIETLQKLG---NNRFRILLTIIPPYP 134 (209)
T ss_dssp GCSEEEEEEECCCSSSH--HHHHHHTSSEEEEEECSS-HHHHHHHHHHHHHHHHTC---SSSEEEEECSBCCTT
T ss_pred cCCEEEEeCCCCcCcHH--HHHHHHHCCEEEEEecCC-chhHHHHHHHHHHHHhcc---CCCEEEEEEecCCcc
Confidence 567999999987 4432 345567899999999886 455666655555554321 456889999999664
No 258
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.08 E-value=0.00028 Score=49.33 Aligned_cols=26 Identities=19% Similarity=0.349 Sum_probs=21.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcC
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHIG 40 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~~ 40 (193)
...-.|+|+|++|||||||++.|.+.
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhh
Confidence 34457899999999999999999864
No 259
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.07 E-value=0.00031 Score=50.58 Aligned_cols=24 Identities=25% Similarity=0.343 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCc
Q 029446 19 RVVMLGLDAAGKTTILYKLHIGEV 42 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~~~~ 42 (193)
.++++|+.|||||||++.+.+-..
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl~~ 56 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCLDK 56 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Confidence 579999999999999999886543
No 260
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.06 E-value=0.00031 Score=53.69 Aligned_cols=24 Identities=21% Similarity=0.234 Sum_probs=21.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCc
Q 029446 19 RVVMLGLDAAGKTTILYKLHIGEV 42 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~~~~ 42 (193)
.++++|++|+|||||+|.+.+...
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCccHHHHHHHHhcccc
Confidence 689999999999999999998655
No 261
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.05 E-value=0.00049 Score=51.82 Aligned_cols=30 Identities=20% Similarity=0.029 Sum_probs=24.1
Q ss_pred hhhcCCCccEEEEEcCCCCCHHHHHHHHhc
Q 029446 10 DVFFGNSEMRVVMLGLDAAGKTTILYKLHI 39 (193)
Q Consensus 10 ~~~~~~~~~~v~v~G~~~~GKssli~~l~~ 39 (193)
........+-|+|+|++|||||||++.+.+
T Consensus 85 ~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 85 GKPEPKVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp TCCCCCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred ccCCCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 333345678899999999999999988864
No 262
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.05 E-value=0.0007 Score=46.27 Aligned_cols=36 Identities=25% Similarity=0.353 Sum_probs=26.7
Q ss_pred HHHHhhhhcCCCccEEEEEcCCCCCHHHHHHHHhcC
Q 029446 5 FRKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIG 40 (193)
Q Consensus 5 ~~~~~~~~~~~~~~~v~v~G~~~~GKssli~~l~~~ 40 (193)
++++.........-.+++.|++|+|||++++.+...
T Consensus 31 ~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 31 IRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp HHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHH
Confidence 444444444445567899999999999999988754
No 263
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.04 E-value=0.00037 Score=49.00 Aligned_cols=25 Identities=28% Similarity=0.271 Sum_probs=21.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhc
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHI 39 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~ 39 (193)
.....|+|+|+.|||||||++.+.+
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999998876
No 264
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.04 E-value=0.00031 Score=49.46 Aligned_cols=25 Identities=20% Similarity=0.276 Sum_probs=21.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q 029446 17 EMRVVMLGLDAAGKTTILYKLHIGE 41 (193)
Q Consensus 17 ~~~v~v~G~~~~GKssli~~l~~~~ 41 (193)
.--|+++|++||||||+++.|.+..
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 3468999999999999999998654
No 265
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.02 E-value=0.00035 Score=49.88 Aligned_cols=23 Identities=35% Similarity=0.609 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 029446 19 RVVMLGLDAAGKTTILYKLHIGE 41 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~~~ 41 (193)
.++++|+.|||||||++.+.+-.
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999988654
No 266
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.02 E-value=0.00084 Score=50.10 Aligned_cols=37 Identities=24% Similarity=0.349 Sum_probs=26.6
Q ss_pred hHHHHhhhhcCCCccEEEEEcCCCCCHHHHHHHHhcCCcc
Q 029446 4 AFRKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVL 43 (193)
Q Consensus 4 ~~~~~~~~~~~~~~~~v~v~G~~~~GKssli~~l~~~~~~ 43 (193)
.+..++.... .-.++++|++|+|||||+|.+.+...+
T Consensus 159 gv~~lf~~l~---geiv~l~G~sG~GKSTll~~l~g~~~~ 195 (301)
T 1u0l_A 159 GIEELKEYLK---GKISTMAGLSGVGKSSLLNAINPGLKL 195 (301)
T ss_dssp THHHHHHHHS---SSEEEEECSTTSSHHHHHHHHSTTCCC
T ss_pred CHHHHHHHhc---CCeEEEECCCCCcHHHHHHHhcccccc
Confidence 3444444333 236789999999999999999876544
No 267
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.01 E-value=0.00043 Score=46.84 Aligned_cols=20 Identities=20% Similarity=0.398 Sum_probs=18.6
Q ss_pred cEEEEEcCCCCCHHHHHHHH
Q 029446 18 MRVVMLGLDAAGKTTILYKL 37 (193)
Q Consensus 18 ~~v~v~G~~~~GKssli~~l 37 (193)
+.|++.|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999999
No 268
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.99 E-value=0.00038 Score=48.05 Aligned_cols=21 Identities=24% Similarity=0.324 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 029446 19 RVVMLGLDAAGKTTILYKLHI 39 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~ 39 (193)
.++++|++||||||+++.+.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999975
No 269
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.98 E-value=0.00062 Score=47.49 Aligned_cols=27 Identities=44% Similarity=0.450 Sum_probs=23.1
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhc
Q 029446 13 FGNSEMRVVMLGLDAAGKTTILYKLHI 39 (193)
Q Consensus 13 ~~~~~~~v~v~G~~~~GKssli~~l~~ 39 (193)
.....+.|++.|.+||||||+.+.|..
T Consensus 16 ~~~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 16 PRGSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CCCSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 445668999999999999999998864
No 270
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.98 E-value=0.0004 Score=47.12 Aligned_cols=23 Identities=30% Similarity=0.349 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q 029446 18 MRVVMLGLDAAGKTTILYKLHIG 40 (193)
Q Consensus 18 ~~v~v~G~~~~GKssli~~l~~~ 40 (193)
..|+++|++||||||+.+.+.+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999998763
No 271
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=96.97 E-value=0.00043 Score=49.97 Aligned_cols=23 Identities=30% Similarity=0.265 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 029446 19 RVVMLGLDAAGKTTILYKLHIGE 41 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~~~ 41 (193)
.++++|+.|||||||++.+.+-.
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998754
No 272
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.97 E-value=0.00045 Score=47.84 Aligned_cols=21 Identities=38% Similarity=0.585 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 029446 20 VVMLGLDAAGKTTILYKLHIG 40 (193)
Q Consensus 20 v~v~G~~~~GKssli~~l~~~ 40 (193)
|+|+|++|||||||+++|...
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999999754
No 273
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.96 E-value=0.00041 Score=48.62 Aligned_cols=25 Identities=24% Similarity=0.264 Sum_probs=21.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcC
Q 029446 16 SEMRVVMLGLDAAGKTTILYKLHIG 40 (193)
Q Consensus 16 ~~~~v~v~G~~~~GKssli~~l~~~ 40 (193)
....|+++|++||||||+++.|...
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4457899999999999999999753
No 274
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=96.96 E-value=0.00045 Score=48.97 Aligned_cols=23 Identities=30% Similarity=0.290 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 029446 19 RVVMLGLDAAGKTTILYKLHIGE 41 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~~~ 41 (193)
.++++|+.|||||||++.+.+-.
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998754
No 275
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=96.96 E-value=0.0012 Score=49.32 Aligned_cols=35 Identities=29% Similarity=0.480 Sum_probs=25.3
Q ss_pred hHHHHhhhhcCCCccEEEEEcCCCCCHHHHHHHHhcCCc
Q 029446 4 AFRKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEV 42 (193)
Q Consensus 4 ~~~~~~~~~~~~~~~~v~v~G~~~~GKssli~~l~~~~~ 42 (193)
.+..+++... .-.++++|++|+|||||+|.+. ...
T Consensus 155 gi~~L~~~l~---G~i~~l~G~sG~GKSTLln~l~-~~~ 189 (302)
T 2yv5_A 155 GIDELVDYLE---GFICILAGPSGVGKSSILSRLT-GEE 189 (302)
T ss_dssp THHHHHHHTT---TCEEEEECSTTSSHHHHHHHHH-SCC
T ss_pred CHHHHHhhcc---CcEEEEECCCCCCHHHHHHHHH-Hhh
Confidence 3444544332 3467999999999999999998 543
No 276
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.95 E-value=0.00056 Score=47.76 Aligned_cols=25 Identities=20% Similarity=0.331 Sum_probs=21.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q 029446 17 EMRVVMLGLDAAGKTTILYKLHIGE 41 (193)
Q Consensus 17 ~~~v~v~G~~~~GKssli~~l~~~~ 41 (193)
...|+++|++||||||+++.+.+..
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3578999999999999999998654
No 277
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.95 E-value=0.00045 Score=50.94 Aligned_cols=23 Identities=22% Similarity=0.273 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 029446 19 RVVMLGLDAAGKTTILYKLHIGE 41 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~~~ 41 (193)
.++|+|+.|||||||++.+.+-.
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 57899999999999999998744
No 278
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.95 E-value=0.00048 Score=46.58 Aligned_cols=21 Identities=29% Similarity=0.328 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 029446 19 RVVMLGLDAAGKTTILYKLHI 39 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~ 39 (193)
.|++.|.+||||||+.+.|..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999864
No 279
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=96.95 E-value=0.00045 Score=50.54 Aligned_cols=24 Identities=25% Similarity=0.400 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCc
Q 029446 19 RVVMLGLDAAGKTTILYKLHIGEV 42 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~~~~ 42 (193)
.++|+|+.|||||||++.+.+-..
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl~~ 57 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFLEK 57 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 578999999999999999987543
No 280
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.94 E-value=0.00042 Score=48.17 Aligned_cols=22 Identities=32% Similarity=0.362 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 029446 19 RVVMLGLDAAGKTTILYKLHIG 40 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~~ 40 (193)
.++++|+.|+|||||++.+.+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 5789999999999999998763
No 281
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.94 E-value=0.00055 Score=46.64 Aligned_cols=22 Identities=18% Similarity=0.282 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 029446 18 MRVVMLGLDAAGKTTILYKLHI 39 (193)
Q Consensus 18 ~~v~v~G~~~~GKssli~~l~~ 39 (193)
..|++.|.+||||||+.+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3689999999999999999986
No 282
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=96.94 E-value=0.00048 Score=50.26 Aligned_cols=23 Identities=17% Similarity=0.284 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 029446 19 RVVMLGLDAAGKTTILYKLHIGE 41 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~~~ 41 (193)
.++++|+.|||||||++.+.+-.
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998754
No 283
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.93 E-value=0.00054 Score=49.36 Aligned_cols=23 Identities=26% Similarity=0.343 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 029446 19 RVVMLGLDAAGKTTILYKLHIGE 41 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~~~ 41 (193)
.++++|+.|||||||++.+.+-.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 67999999999999999998754
No 284
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.93 E-value=0.00055 Score=48.29 Aligned_cols=22 Identities=36% Similarity=0.521 Sum_probs=19.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 029446 18 MRVVMLGLDAAGKTTILYKLHI 39 (193)
Q Consensus 18 ~~v~v~G~~~~GKssli~~l~~ 39 (193)
++|+|.|.+||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999854
No 285
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.92 E-value=0.00046 Score=48.20 Aligned_cols=24 Identities=33% Similarity=0.451 Sum_probs=20.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhc
Q 029446 16 SEMRVVMLGLDAAGKTTILYKLHI 39 (193)
Q Consensus 16 ~~~~v~v~G~~~~GKssli~~l~~ 39 (193)
..-.|+++|++||||||+++.+.+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999998865
No 286
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.91 E-value=0.00053 Score=47.90 Aligned_cols=22 Identities=23% Similarity=0.273 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 029446 18 MRVVMLGLDAAGKTTILYKLHI 39 (193)
Q Consensus 18 ~~v~v~G~~~~GKssli~~l~~ 39 (193)
++|+|+|.+||||||+.+.+.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3799999999999999999876
No 287
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.91 E-value=0.00057 Score=49.56 Aligned_cols=23 Identities=17% Similarity=0.196 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 029446 19 RVVMLGLDAAGKTTILYKLHIGE 41 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~~~ 41 (193)
.++++|+.|||||||++.+.+-.
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998754
No 288
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.91 E-value=0.00051 Score=50.40 Aligned_cols=23 Identities=35% Similarity=0.372 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 029446 19 RVVMLGLDAAGKTTILYKLHIGE 41 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~~~ 41 (193)
.++++|+.|||||||++.+.+-.
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 57899999999999999998743
No 289
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.91 E-value=0.00058 Score=49.38 Aligned_cols=23 Identities=26% Similarity=0.247 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 029446 19 RVVMLGLDAAGKTTILYKLHIGE 41 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~~~ 41 (193)
.++++|+.|||||||++.+.+-.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999998743
No 290
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.90 E-value=0.0006 Score=48.11 Aligned_cols=22 Identities=36% Similarity=0.474 Sum_probs=19.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 029446 18 MRVVMLGLDAAGKTTILYKLHI 39 (193)
Q Consensus 18 ~~v~v~G~~~~GKssli~~l~~ 39 (193)
++|++.|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999854
No 291
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.89 E-value=0.00061 Score=48.82 Aligned_cols=24 Identities=25% Similarity=0.252 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCc
Q 029446 19 RVVMLGLDAAGKTTILYKLHIGEV 42 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~~~~ 42 (193)
.++++|+.|||||||++.+.+-..
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGELE 59 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 578999999999999999987543
No 292
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=96.89 E-value=0.00055 Score=50.12 Aligned_cols=23 Identities=39% Similarity=0.537 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 029446 19 RVVMLGLDAAGKTTILYKLHIGE 41 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~~~ 41 (193)
.++++|+.|||||||++.+.+-.
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Confidence 57899999999999999988754
No 293
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.89 E-value=0.00056 Score=49.36 Aligned_cols=23 Identities=35% Similarity=0.352 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 029446 19 RVVMLGLDAAGKTTILYKLHIGE 41 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~~~ 41 (193)
.++++|+.|||||||++.+.+-.
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998754
No 294
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.88 E-value=0.0006 Score=47.47 Aligned_cols=22 Identities=32% Similarity=0.534 Sum_probs=19.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 029446 18 MRVVMLGLDAAGKTTILYKLHI 39 (193)
Q Consensus 18 ~~v~v~G~~~~GKssli~~l~~ 39 (193)
+.|++.|.+||||||+.+.|..
T Consensus 1 ~~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 1 MKIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEECCCccCHHHHHHHHHH
Confidence 3689999999999999999875
No 295
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.87 E-value=0.00057 Score=49.82 Aligned_cols=23 Identities=30% Similarity=0.271 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 029446 19 RVVMLGLDAAGKTTILYKLHIGE 41 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~~~ 41 (193)
.++++|+.|||||||++.+.+-.
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998754
No 296
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.87 E-value=0.00084 Score=46.23 Aligned_cols=26 Identities=15% Similarity=0.314 Sum_probs=22.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcC
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHIG 40 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~~ 40 (193)
.+...|+++|.+||||||+.+.|...
T Consensus 8 ~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 8 PKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 45578999999999999999998765
No 297
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.87 E-value=0.0008 Score=45.77 Aligned_cols=23 Identities=17% Similarity=0.392 Sum_probs=20.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 029446 17 EMRVVMLGLDAAGKTTILYKLHI 39 (193)
Q Consensus 17 ~~~v~v~G~~~~GKssli~~l~~ 39 (193)
...++++|++||||||+.+.+.+
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 45789999999999999998864
No 298
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=96.87 E-value=0.00059 Score=49.55 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 029446 19 RVVMLGLDAAGKTTILYKLHIGE 41 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~~~ 41 (193)
.++++|+.|||||||++.+.+-.
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 57899999999999999988754
No 299
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.87 E-value=0.00072 Score=48.00 Aligned_cols=23 Identities=22% Similarity=0.208 Sum_probs=20.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 029446 17 EMRVVMLGLDAAGKTTILYKLHI 39 (193)
Q Consensus 17 ~~~v~v~G~~~~GKssli~~l~~ 39 (193)
...|+++|++||||||+.+.+.+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999998875
No 300
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=96.86 E-value=0.0002 Score=53.62 Aligned_cols=25 Identities=20% Similarity=0.258 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCc
Q 029446 18 MRVVMLGLDAAGKTTILYKLHIGEV 42 (193)
Q Consensus 18 ~~v~v~G~~~~GKssli~~l~~~~~ 42 (193)
-.++++|++|+|||||+|.+.+...
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~~~ 198 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPELG 198 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC---
T ss_pred CEEEEECCCCCCHHHHHHHhccccc
Confidence 3789999999999999999987543
No 301
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.86 E-value=0.00068 Score=47.33 Aligned_cols=23 Identities=17% Similarity=0.362 Sum_probs=20.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 029446 17 EMRVVMLGLDAAGKTTILYKLHI 39 (193)
Q Consensus 17 ~~~v~v~G~~~~GKssli~~l~~ 39 (193)
...|+++|.+||||||+.+.|..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998865
No 302
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.86 E-value=0.00061 Score=49.48 Aligned_cols=22 Identities=27% Similarity=0.273 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 029446 19 RVVMLGLDAAGKTTILYKLHIG 40 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~~ 40 (193)
.++++|+.|||||||++.+.+-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999884
No 303
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.86 E-value=0.00045 Score=48.76 Aligned_cols=22 Identities=27% Similarity=0.271 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 029446 19 RVVMLGLDAAGKTTILYKLHIG 40 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~~ 40 (193)
.++++|+.|||||||++.+.+-
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999876
No 304
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.85 E-value=0.00069 Score=49.51 Aligned_cols=22 Identities=27% Similarity=0.265 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 029446 19 RVVMLGLDAAGKTTILYKLHIG 40 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~~ 40 (193)
.++|+|+.|||||||++.+.+-
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6899999999999999999874
No 305
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=96.85 E-value=0.00062 Score=49.94 Aligned_cols=22 Identities=23% Similarity=0.299 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 029446 19 RVVMLGLDAAGKTTILYKLHIG 40 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~~ 40 (193)
.++|+|+.|||||||++.+.+-
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999875
No 306
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.84 E-value=0.00089 Score=45.63 Aligned_cols=36 Identities=25% Similarity=0.400 Sum_probs=26.5
Q ss_pred HHHHhhhhcCCCccEEEEEcCCCCCHHHHHHHHhcC
Q 029446 5 FRKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIG 40 (193)
Q Consensus 5 ~~~~~~~~~~~~~~~v~v~G~~~~GKssli~~l~~~ 40 (193)
++.+.+.......-.+++.|++|+|||++++.+...
T Consensus 31 ~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 31 IRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp HHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHH
Confidence 344444444445667899999999999999888754
No 307
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.83 E-value=0.00064 Score=50.83 Aligned_cols=24 Identities=17% Similarity=0.243 Sum_probs=20.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhc
Q 029446 16 SEMRVVMLGLDAAGKTTILYKLHI 39 (193)
Q Consensus 16 ~~~~v~v~G~~~~GKssli~~l~~ 39 (193)
..=.++|+|++|+|||||++.+.+
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhh
Confidence 334789999999999999999875
No 308
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.83 E-value=0.00074 Score=47.26 Aligned_cols=22 Identities=32% Similarity=0.169 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 029446 18 MRVVMLGLDAAGKTTILYKLHI 39 (193)
Q Consensus 18 ~~v~v~G~~~~GKssli~~l~~ 39 (193)
+.|+++|++||||||+.+.+.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999976
No 309
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.83 E-value=0.00066 Score=49.91 Aligned_cols=23 Identities=22% Similarity=0.255 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 029446 19 RVVMLGLDAAGKTTILYKLHIGE 41 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~~~ 41 (193)
.++|+|+.|||||||++.+.+-.
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999998754
No 310
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.82 E-value=0.00084 Score=46.29 Aligned_cols=24 Identities=29% Similarity=0.385 Sum_probs=20.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhc
Q 029446 16 SEMRVVMLGLDAAGKTTILYKLHI 39 (193)
Q Consensus 16 ~~~~v~v~G~~~~GKssli~~l~~ 39 (193)
....|++.|.+||||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999999864
No 311
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=96.82 E-value=0.00073 Score=49.90 Aligned_cols=23 Identities=43% Similarity=0.635 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 029446 19 RVVMLGLDAAGKTTILYKLHIGE 41 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~~~ 41 (193)
.++|+|+.|||||||++.+.+-.
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 57899999999999999998754
No 312
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.82 E-value=0.00064 Score=49.71 Aligned_cols=23 Identities=17% Similarity=0.206 Sum_probs=20.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 029446 17 EMRVVMLGLDAAGKTTILYKLHI 39 (193)
Q Consensus 17 ~~~v~v~G~~~~GKssli~~l~~ 39 (193)
.=.++|+|+.|||||||++.+.+
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHH
T ss_pred CCEEEEECCCCccHHHHHHHHHH
Confidence 34689999999999999999876
No 313
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.81 E-value=0.0011 Score=49.70 Aligned_cols=25 Identities=24% Similarity=0.212 Sum_probs=22.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhc
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHI 39 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~ 39 (193)
.....|+|+|+.|||||||++.+.+
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4557899999999999999998876
No 314
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=96.81 E-value=0.00068 Score=49.33 Aligned_cols=24 Identities=29% Similarity=0.286 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCc
Q 029446 19 RVVMLGLDAAGKTTILYKLHIGEV 42 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~~~~ 42 (193)
.++++|+.|||||||++.+.+-..
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIHR 56 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 578999999999999999987543
No 315
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.81 E-value=0.00083 Score=48.49 Aligned_cols=25 Identities=28% Similarity=0.395 Sum_probs=22.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhc
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHI 39 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~ 39 (193)
...++|++.|++||||||+.+.|..
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999999864
No 316
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.80 E-value=0.0014 Score=48.72 Aligned_cols=27 Identities=11% Similarity=0.122 Sum_probs=22.9
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhc
Q 029446 13 FGNSEMRVVMLGLDAAGKTTILYKLHI 39 (193)
Q Consensus 13 ~~~~~~~v~v~G~~~~GKssli~~l~~ 39 (193)
.......|+|+|++|||||||++.+..
T Consensus 27 ~~~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 27 GNKCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp TCCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 345678999999999999999988764
No 317
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=96.80 E-value=0.00072 Score=49.59 Aligned_cols=23 Identities=22% Similarity=0.193 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 029446 19 RVVMLGLDAAGKTTILYKLHIGE 41 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~~~ 41 (193)
.++++|+.|||||||++.+.+-.
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 57899999999999999998753
No 318
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.80 E-value=0.00093 Score=45.98 Aligned_cols=27 Identities=33% Similarity=0.291 Sum_probs=22.5
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcC
Q 029446 14 GNSEMRVVMLGLDAAGKTTILYKLHIG 40 (193)
Q Consensus 14 ~~~~~~v~v~G~~~~GKssli~~l~~~ 40 (193)
......|+++|.+||||||+.+.+...
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 345678999999999999999988653
No 319
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.79 E-value=0.0008 Score=47.40 Aligned_cols=22 Identities=41% Similarity=0.440 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 029446 18 MRVVMLGLDAAGKTTILYKLHI 39 (193)
Q Consensus 18 ~~v~v~G~~~~GKssli~~l~~ 39 (193)
+.|+++|+|||||+|....+..
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999998875
No 320
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.78 E-value=0.00069 Score=48.07 Aligned_cols=21 Identities=24% Similarity=0.292 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 029446 19 RVVMLGLDAAGKTTILYKLHI 39 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~ 39 (193)
-++|+|++|||||||++.+.+
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999986
No 321
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.78 E-value=0.00087 Score=45.99 Aligned_cols=23 Identities=35% Similarity=0.384 Sum_probs=20.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 029446 17 EMRVVMLGLDAAGKTTILYKLHI 39 (193)
Q Consensus 17 ~~~v~v~G~~~~GKssli~~l~~ 39 (193)
...|+++|.+||||||+.+.|..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999874
No 322
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.77 E-value=0.0008 Score=46.93 Aligned_cols=22 Identities=32% Similarity=0.410 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 029446 18 MRVVMLGLDAAGKTTILYKLHI 39 (193)
Q Consensus 18 ~~v~v~G~~~~GKssli~~l~~ 39 (193)
-.|+++|++||||||+.+.+..
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4799999999999999998874
No 323
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.77 E-value=0.00076 Score=48.49 Aligned_cols=20 Identities=30% Similarity=0.393 Sum_probs=18.4
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 029446 19 RVVMLGLDAAGKTTILYKLH 38 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~ 38 (193)
-++++|++|||||||++.+.
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 57899999999999999887
No 324
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.77 E-value=0.00094 Score=45.93 Aligned_cols=23 Identities=26% Similarity=0.156 Sum_probs=20.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 029446 17 EMRVVMLGLDAAGKTTILYKLHI 39 (193)
Q Consensus 17 ~~~v~v~G~~~~GKssli~~l~~ 39 (193)
...|++.|.+||||||+.+.|..
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998864
No 325
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.76 E-value=0.00098 Score=47.20 Aligned_cols=24 Identities=33% Similarity=0.459 Sum_probs=21.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhc
Q 029446 16 SEMRVVMLGLDAAGKTTILYKLHI 39 (193)
Q Consensus 16 ~~~~v~v~G~~~~GKssli~~l~~ 39 (193)
..+.|+++|.+||||||+.+.|..
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998865
No 326
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.76 E-value=0.001 Score=46.57 Aligned_cols=25 Identities=24% Similarity=0.340 Sum_probs=22.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcC
Q 029446 16 SEMRVVMLGLDAAGKTTILYKLHIG 40 (193)
Q Consensus 16 ~~~~v~v~G~~~~GKssli~~l~~~ 40 (193)
....|+|+|.+||||||+.+.+.+.
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 4468999999999999999999874
No 327
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.75 E-value=0.0009 Score=50.24 Aligned_cols=27 Identities=22% Similarity=0.108 Sum_probs=23.1
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcC
Q 029446 14 GNSEMRVVMLGLDAAGKTTILYKLHIG 40 (193)
Q Consensus 14 ~~~~~~v~v~G~~~~GKssli~~l~~~ 40 (193)
.....-|+|+|++|||||||++.+.+-
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhh
Confidence 356678999999999999999998763
No 328
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.75 E-value=0.00079 Score=47.00 Aligned_cols=26 Identities=23% Similarity=0.321 Sum_probs=21.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcC
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHIG 40 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~~ 40 (193)
.....|+++|++||||||+.+.+.+.
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45568999999999999999988753
No 329
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.75 E-value=0.00091 Score=46.05 Aligned_cols=21 Identities=29% Similarity=0.455 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 029446 19 RVVMLGLDAAGKTTILYKLHI 39 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~ 39 (193)
.|++.|.+||||||+.+.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998865
No 330
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.74 E-value=0.00085 Score=45.71 Aligned_cols=22 Identities=27% Similarity=0.359 Sum_probs=19.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 029446 18 MRVVMLGLDAAGKTTILYKLHI 39 (193)
Q Consensus 18 ~~v~v~G~~~~GKssli~~l~~ 39 (193)
..|++.|.+||||||+.+.|..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999876
No 331
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.74 E-value=0.00095 Score=47.08 Aligned_cols=22 Identities=36% Similarity=0.472 Sum_probs=19.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 029446 18 MRVVMLGLDAAGKTTILYKLHI 39 (193)
Q Consensus 18 ~~v~v~G~~~~GKssli~~l~~ 39 (193)
++|++.|.+||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998865
No 332
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.74 E-value=0.0005 Score=49.16 Aligned_cols=22 Identities=32% Similarity=0.314 Sum_probs=15.0
Q ss_pred EEEEEcCCCCCHHHHHHHHh-cC
Q 029446 19 RVVMLGLDAAGKTTILYKLH-IG 40 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~-~~ 40 (193)
-++++|+.||||||+++.+. +.
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp EEEEECSCC----CHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 68999999999999999998 54
No 333
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=96.73 E-value=0.00094 Score=48.89 Aligned_cols=23 Identities=35% Similarity=0.495 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 029446 19 RVVMLGLDAAGKTTILYKLHIGE 41 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~~~ 41 (193)
.++++|+.|||||||++.+.+-.
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998765
No 334
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.73 E-value=0.0011 Score=46.27 Aligned_cols=25 Identities=28% Similarity=0.379 Sum_probs=22.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhc
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHI 39 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~ 39 (193)
.....|+|+|.+||||||+++.+.+
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999998875
No 335
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.72 E-value=0.001 Score=46.26 Aligned_cols=27 Identities=19% Similarity=0.166 Sum_probs=23.1
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcC
Q 029446 14 GNSEMRVVMLGLDAAGKTTILYKLHIG 40 (193)
Q Consensus 14 ~~~~~~v~v~G~~~~GKssli~~l~~~ 40 (193)
..+...|+|+|.+||||||+.+.|...
T Consensus 5 ~~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 5 AKHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp -CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHC
Confidence 356688999999999999999998765
No 336
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.71 E-value=0.0011 Score=47.93 Aligned_cols=25 Identities=24% Similarity=0.218 Sum_probs=21.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhc
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHI 39 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~ 39 (193)
.....|+|+|+.|||||||++.+.+
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999998876
No 337
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.69 E-value=0.0013 Score=45.83 Aligned_cols=25 Identities=32% Similarity=0.383 Sum_probs=21.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcC
Q 029446 16 SEMRVVMLGLDAAGKTTILYKLHIG 40 (193)
Q Consensus 16 ~~~~v~v~G~~~~GKssli~~l~~~ 40 (193)
+...|++.|.+||||||+.+.|...
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 3467999999999999999999865
No 338
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.68 E-value=0.0011 Score=46.36 Aligned_cols=23 Identities=22% Similarity=0.332 Sum_probs=20.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 029446 17 EMRVVMLGLDAAGKTTILYKLHI 39 (193)
Q Consensus 17 ~~~v~v~G~~~~GKssli~~l~~ 39 (193)
...|++.|.+||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 46799999999999999999865
No 339
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.68 E-value=0.0014 Score=45.69 Aligned_cols=26 Identities=31% Similarity=0.218 Sum_probs=21.8
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhc
Q 029446 14 GNSEMRVVMLGLDAAGKTTILYKLHI 39 (193)
Q Consensus 14 ~~~~~~v~v~G~~~~GKssli~~l~~ 39 (193)
......|++.|.+||||||+.+.|..
T Consensus 12 ~~~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 12 PDQVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TTTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 34456899999999999999998864
No 340
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.67 E-value=0.0012 Score=44.58 Aligned_cols=22 Identities=32% Similarity=0.511 Sum_probs=19.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 029446 18 MRVVMLGLDAAGKTTILYKLHI 39 (193)
Q Consensus 18 ~~v~v~G~~~~GKssli~~l~~ 39 (193)
++|++.|.+||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 1 MRIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp CEEEEESCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998865
No 341
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.67 E-value=0.00047 Score=47.12 Aligned_cols=52 Identities=19% Similarity=0.176 Sum_probs=26.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEEEEEcCEEEEEEecCCCCCCH
Q 029446 19 RVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLR 75 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~ 75 (193)
.++|+|+.|||||||++.+.+-..+ .+.....+..++..+.-+|.++.+.++
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~~~-----~g~~~G~I~~dg~~i~~~~~~~~d~~r 55 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPILRE-----RGLRVAVVKRHAHGDFEIDKEGKDSWK 55 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHHH-----TTCCEEEEEC------------CHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhh-----cCCceEEEEEcCcccccCCccchhHHH
Confidence 6899999999999999998853221 123334555554444444544444333
No 342
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.66 E-value=0.0008 Score=51.59 Aligned_cols=25 Identities=28% Similarity=0.380 Sum_probs=21.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q 029446 17 EMRVVMLGLDAAGKTTILYKLHIGE 41 (193)
Q Consensus 17 ~~~v~v~G~~~~GKssli~~l~~~~ 41 (193)
.-+++|+|++|||||||++.+.+-.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3489999999999999999988753
No 343
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.66 E-value=0.0012 Score=45.50 Aligned_cols=23 Identities=30% Similarity=0.294 Sum_probs=20.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 029446 17 EMRVVMLGLDAAGKTTILYKLHI 39 (193)
Q Consensus 17 ~~~v~v~G~~~~GKssli~~l~~ 39 (193)
...|++.|.+||||||+.+.|..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999998864
No 344
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.64 E-value=0.0012 Score=49.10 Aligned_cols=23 Identities=26% Similarity=0.290 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 029446 19 RVVMLGLDAAGKTTILYKLHIGE 41 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~~~ 41 (193)
.++++|+.|||||||++.+.+-.
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 57999999999999999998754
No 345
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.64 E-value=0.0012 Score=46.73 Aligned_cols=24 Identities=25% Similarity=0.347 Sum_probs=20.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhc
Q 029446 16 SEMRVVMLGLDAAGKTTILYKLHI 39 (193)
Q Consensus 16 ~~~~v~v~G~~~~GKssli~~l~~ 39 (193)
....|+|+|.+||||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 446899999999999999998864
No 346
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.63 E-value=0.0013 Score=46.86 Aligned_cols=24 Identities=25% Similarity=0.480 Sum_probs=20.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhc
Q 029446 16 SEMRVVMLGLDAAGKTTILYKLHI 39 (193)
Q Consensus 16 ~~~~v~v~G~~~~GKssli~~l~~ 39 (193)
+...|++.|.+||||||+.+.|..
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHH
Confidence 347899999999999999998864
No 347
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.63 E-value=0.0015 Score=45.18 Aligned_cols=24 Identities=21% Similarity=0.173 Sum_probs=20.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhc
Q 029446 16 SEMRVVMLGLDAAGKTTILYKLHI 39 (193)
Q Consensus 16 ~~~~v~v~G~~~~GKssli~~l~~ 39 (193)
+...|++.|.+||||||+.+.|..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 446899999999999999998864
No 348
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.63 E-value=0.00079 Score=44.85 Aligned_cols=25 Identities=20% Similarity=0.248 Sum_probs=21.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q 029446 17 EMRVVMLGLDAAGKTTILYKLHIGE 41 (193)
Q Consensus 17 ~~~v~v~G~~~~GKssli~~l~~~~ 41 (193)
.-.++++|++|+|||+|++.+.+..
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 3468899999999999999988643
No 349
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.62 E-value=0.0015 Score=45.82 Aligned_cols=24 Identities=38% Similarity=0.390 Sum_probs=21.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhc
Q 029446 16 SEMRVVMLGLDAAGKTTILYKLHI 39 (193)
Q Consensus 16 ~~~~v~v~G~~~~GKssli~~l~~ 39 (193)
+...|++.|.+||||||+.+.|..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999875
No 350
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.61 E-value=0.0014 Score=48.57 Aligned_cols=24 Identities=21% Similarity=0.263 Sum_probs=21.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhc
Q 029446 16 SEMRVVMLGLDAAGKTTILYKLHI 39 (193)
Q Consensus 16 ~~~~v~v~G~~~~GKssli~~l~~ 39 (193)
....|++.|++||||||+.+.+..
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999864
No 351
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.61 E-value=0.00078 Score=50.42 Aligned_cols=22 Identities=36% Similarity=0.428 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 029446 19 RVVMLGLDAAGKTTILYKLHIG 40 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~~ 40 (193)
.++|+|+.|||||||++.+.+-
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTS
T ss_pred EEEEECCCCchHHHHHHHHHcC
Confidence 6899999999999999998864
No 352
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.61 E-value=0.0014 Score=44.99 Aligned_cols=22 Identities=32% Similarity=0.471 Sum_probs=19.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 029446 18 MRVVMLGLDAAGKTTILYKLHI 39 (193)
Q Consensus 18 ~~v~v~G~~~~GKssli~~l~~ 39 (193)
..|+++|.+||||||+.+.|..
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999864
No 353
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.59 E-value=0.0032 Score=41.52 Aligned_cols=27 Identities=22% Similarity=0.250 Sum_probs=23.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCC
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHIGE 41 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~~~ 41 (193)
.....|++.|++|+|||++.+.+....
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 456779999999999999999987643
No 354
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.59 E-value=0.0011 Score=48.74 Aligned_cols=21 Identities=24% Similarity=0.302 Sum_probs=19.4
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 029446 20 VVMLGLDAAGKTTILYKLHIG 40 (193)
Q Consensus 20 v~v~G~~~~GKssli~~l~~~ 40 (193)
++++|++|+|||||++.+.+.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 999999999999999999863
No 355
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.57 E-value=0.0013 Score=50.36 Aligned_cols=24 Identities=33% Similarity=0.339 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCc
Q 029446 19 RVVMLGLDAAGKTTILYKLHIGEV 42 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~~~~ 42 (193)
-++++|+.|||||||++.+.+-..
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~~ 55 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFEQ 55 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCchHHHHHHHHhcCCC
Confidence 478999999999999999987543
No 356
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.57 E-value=0.0015 Score=45.76 Aligned_cols=24 Identities=33% Similarity=0.289 Sum_probs=21.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhc
Q 029446 16 SEMRVVMLGLDAAGKTTILYKLHI 39 (193)
Q Consensus 16 ~~~~v~v~G~~~~GKssli~~l~~ 39 (193)
....|++.|.+||||||+.+.|..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHH
Confidence 457899999999999999999875
No 357
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.56 E-value=0.0013 Score=50.37 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 029446 19 RVVMLGLDAAGKTTILYKLHIGE 41 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~~~ 41 (193)
-++++|+.|||||||++.+.+-.
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHhcCC
Confidence 57899999999999999988744
No 358
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.56 E-value=0.0012 Score=44.91 Aligned_cols=21 Identities=29% Similarity=0.520 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 029446 19 RVVMLGLDAAGKTTILYKLHI 39 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~ 39 (193)
+|+++|.+||||||+.+.|..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 689999999999999998864
No 359
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.55 E-value=0.0015 Score=46.40 Aligned_cols=22 Identities=23% Similarity=0.336 Sum_probs=19.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 029446 18 MRVVMLGLDAAGKTTILYKLHI 39 (193)
Q Consensus 18 ~~v~v~G~~~~GKssli~~l~~ 39 (193)
+.|++.|.+||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 1 MNILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998864
No 360
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.55 E-value=0.0013 Score=46.51 Aligned_cols=24 Identities=17% Similarity=0.282 Sum_probs=20.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhc
Q 029446 16 SEMRVVMLGLDAAGKTTILYKLHI 39 (193)
Q Consensus 16 ~~~~v~v~G~~~~GKssli~~l~~ 39 (193)
+.+.|++.|.+||||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999998864
No 361
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.55 E-value=0.0015 Score=45.02 Aligned_cols=21 Identities=38% Similarity=0.436 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 029446 19 RVVMLGLDAAGKTTILYKLHI 39 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~ 39 (193)
.|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999875
No 362
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.52 E-value=0.0016 Score=45.04 Aligned_cols=22 Identities=27% Similarity=0.344 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 029446 19 RVVMLGLDAAGKTTILYKLHIG 40 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~~ 40 (193)
.|++.|.+||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998753
No 363
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.50 E-value=0.0015 Score=49.89 Aligned_cols=23 Identities=43% Similarity=0.395 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 029446 19 RVVMLGLDAAGKTTILYKLHIGE 41 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~~~ 41 (193)
-++++|+.|||||||++.+.+-.
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999998754
No 364
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.50 E-value=0.0015 Score=49.99 Aligned_cols=22 Identities=27% Similarity=0.258 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 029446 19 RVVMLGLDAAGKTTILYKLHIG 40 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~~ 40 (193)
.++|+|+.|||||||++.+.+.
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 8999999999999999998763
No 365
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.49 E-value=0.0012 Score=45.17 Aligned_cols=24 Identities=25% Similarity=0.155 Sum_probs=16.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhc
Q 029446 16 SEMRVVMLGLDAAGKTTILYKLHI 39 (193)
Q Consensus 16 ~~~~v~v~G~~~~GKssli~~l~~ 39 (193)
+...|++.|.+||||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 446799999999999999999864
No 366
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.49 E-value=0.0018 Score=44.03 Aligned_cols=23 Identities=26% Similarity=0.261 Sum_probs=20.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 029446 17 EMRVVMLGLDAAGKTTILYKLHI 39 (193)
Q Consensus 17 ~~~v~v~G~~~~GKssli~~l~~ 39 (193)
...+.++|.+|+|||||+.++..
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 34688999999999999999885
No 367
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.49 E-value=0.0014 Score=47.39 Aligned_cols=22 Identities=23% Similarity=0.306 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 029446 19 RVVMLGLDAAGKTTILYKLHIG 40 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~~ 40 (193)
-++++|++|+|||||++.+.+.
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999998864
No 368
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.49 E-value=0.0019 Score=45.56 Aligned_cols=24 Identities=21% Similarity=0.169 Sum_probs=21.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhc
Q 029446 16 SEMRVVMLGLDAAGKTTILYKLHI 39 (193)
Q Consensus 16 ~~~~v~v~G~~~~GKssli~~l~~ 39 (193)
+.+.|+|.|.+||||||+.+.|..
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999875
No 369
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.49 E-value=0.0029 Score=44.95 Aligned_cols=24 Identities=13% Similarity=0.200 Sum_probs=21.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhc
Q 029446 16 SEMRVVMLGLDAAGKTTILYKLHI 39 (193)
Q Consensus 16 ~~~~v~v~G~~~~GKssli~~l~~ 39 (193)
..-.+++.|++|+|||++++.+..
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 556899999999999999998875
No 370
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.48 E-value=0.0019 Score=44.09 Aligned_cols=24 Identities=25% Similarity=0.256 Sum_probs=20.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhc
Q 029446 16 SEMRVVMLGLDAAGKTTILYKLHI 39 (193)
Q Consensus 16 ~~~~v~v~G~~~~GKssli~~l~~ 39 (193)
....|++.|.+|+||||+.+.+..
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHH
Confidence 345799999999999999999874
No 371
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.47 E-value=0.0016 Score=49.31 Aligned_cols=23 Identities=26% Similarity=0.241 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 029446 19 RVVMLGLDAAGKTTILYKLHIGE 41 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~~~ 41 (193)
.++|+|+.|||||||++.+.+-.
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGGS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999998753
No 372
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.47 E-value=0.0016 Score=49.79 Aligned_cols=23 Identities=39% Similarity=0.309 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 029446 19 RVVMLGLDAAGKTTILYKLHIGE 41 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~~~ 41 (193)
.++++|+.|||||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHCCC
Confidence 47899999999999999998743
No 373
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.45 E-value=0.0017 Score=50.07 Aligned_cols=23 Identities=35% Similarity=0.391 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 029446 19 RVVMLGLDAAGKTTILYKLHIGE 41 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~~~ 41 (193)
-++++|+.|||||||++.+.+-.
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHcCC
Confidence 47899999999999999998744
No 374
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.45 E-value=0.0017 Score=49.77 Aligned_cols=23 Identities=30% Similarity=0.443 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 029446 19 RVVMLGLDAAGKTTILYKLHIGE 41 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~~~ 41 (193)
.++++|+.|||||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 47899999999999999998744
No 375
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.45 E-value=0.002 Score=44.56 Aligned_cols=23 Identities=26% Similarity=0.182 Sum_probs=20.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 029446 17 EMRVVMLGLDAAGKTTILYKLHI 39 (193)
Q Consensus 17 ~~~v~v~G~~~~GKssli~~l~~ 39 (193)
...|++.|.+||||||+.+.|..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998865
No 376
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.43 E-value=0.0016 Score=49.97 Aligned_cols=24 Identities=29% Similarity=0.332 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 029446 18 MRVVMLGLDAAGKTTILYKLHIGE 41 (193)
Q Consensus 18 ~~v~v~G~~~~GKssli~~l~~~~ 41 (193)
-.++|+|+.|||||||++.+.+-.
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHHhcC
Confidence 478999999999999999998743
No 377
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.43 E-value=0.0016 Score=48.65 Aligned_cols=22 Identities=36% Similarity=0.533 Sum_probs=19.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 029446 18 MRVVMLGLDAAGKTTILYKLHI 39 (193)
Q Consensus 18 ~~v~v~G~~~~GKssli~~l~~ 39 (193)
-.++++|+.||||||+++.+.+
T Consensus 101 ~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 4789999999999999999875
No 378
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.42 E-value=0.0037 Score=43.46 Aligned_cols=23 Identities=22% Similarity=0.187 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q 029446 18 MRVVMLGLDAAGKTTILYKLHIG 40 (193)
Q Consensus 18 ~~v~v~G~~~~GKssli~~l~~~ 40 (193)
-.+++.|++|+|||+|+..+...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 67999999999999999988753
No 379
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.41 E-value=0.0029 Score=44.20 Aligned_cols=22 Identities=23% Similarity=0.294 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 029446 19 RVVMLGLDAAGKTTILYKLHIG 40 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~~ 40 (193)
.+++.|++|+|||++++.+...
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999988753
No 380
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.41 E-value=0.0018 Score=49.80 Aligned_cols=24 Identities=33% Similarity=0.333 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCc
Q 029446 19 RVVMLGLDAAGKTTILYKLHIGEV 42 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~~~~ 42 (193)
-++++|+.|||||||++.+.+-..
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~~ 54 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLEE 54 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCcHHHHHHHHHHcCCC
Confidence 478999999999999999987543
No 381
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.41 E-value=0.0027 Score=43.62 Aligned_cols=23 Identities=26% Similarity=0.180 Sum_probs=20.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 029446 17 EMRVVMLGLDAAGKTTILYKLHI 39 (193)
Q Consensus 17 ~~~v~v~G~~~~GKssli~~l~~ 39 (193)
...|++.|.+||||||+.+.|..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998864
No 382
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.41 E-value=0.0024 Score=45.61 Aligned_cols=25 Identities=40% Similarity=0.412 Sum_probs=21.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhc
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHI 39 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~ 39 (193)
.....|+++|.+||||||+.+.|..
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999998864
No 383
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.41 E-value=0.0024 Score=47.17 Aligned_cols=25 Identities=16% Similarity=0.339 Sum_probs=21.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhc
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHI 39 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~ 39 (193)
.+.+.|+|.|.+||||||+.+.|..
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999998863
No 384
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.40 E-value=0.0016 Score=46.51 Aligned_cols=26 Identities=27% Similarity=0.277 Sum_probs=22.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcC
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHIG 40 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~~ 40 (193)
....-|+|.|..||||||+++.+.+.
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 34568999999999999999998764
No 385
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.39 E-value=0.0018 Score=49.79 Aligned_cols=23 Identities=17% Similarity=0.206 Sum_probs=20.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 029446 17 EMRVVMLGLDAAGKTTILYKLHI 39 (193)
Q Consensus 17 ~~~v~v~G~~~~GKssli~~l~~ 39 (193)
.=.++|+|+.||||||+++.+.+
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 34699999999999999999976
No 386
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.39 E-value=0.0023 Score=44.94 Aligned_cols=21 Identities=19% Similarity=0.175 Sum_probs=18.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 029446 19 RVVMLGLDAAGKTTILYKLHI 39 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~ 39 (193)
.+++.|+||+|||+++.++..
T Consensus 60 ~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999887764
No 387
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.39 E-value=0.0022 Score=46.42 Aligned_cols=27 Identities=22% Similarity=0.277 Sum_probs=21.5
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhc
Q 029446 13 FGNSEMRVVMLGLDAAGKTTILYKLHI 39 (193)
Q Consensus 13 ~~~~~~~v~v~G~~~~GKssli~~l~~ 39 (193)
...+.+.|+|.|.+||||||+.+.|..
T Consensus 18 ~~~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 18 NGGEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp ---CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCCcEEEEEECCCCCCHHHHHHHHHH
Confidence 334668899999999999999988865
No 388
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=96.38 E-value=0.0023 Score=49.05 Aligned_cols=24 Identities=25% Similarity=0.569 Sum_probs=21.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHh
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLH 38 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~ 38 (193)
.+..||+++|.++||||||++++.
T Consensus 31 ~~~~killlG~~~SGKST~~kq~~ 54 (362)
T 1zcb_A 31 ARLVKILLLGAGESGKSTFLKQMR 54 (362)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHH
T ss_pred cCccEEEEECCCCCcHHHHHHHHH
Confidence 567999999999999999988863
No 389
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.38 E-value=0.0019 Score=49.62 Aligned_cols=23 Identities=39% Similarity=0.382 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 029446 19 RVVMLGLDAAGKTTILYKLHIGE 41 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~~~ 41 (193)
.++++|+.|||||||++.+.+-.
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 56899999999999999998743
No 390
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.38 E-value=0.0026 Score=46.11 Aligned_cols=23 Identities=26% Similarity=0.225 Sum_probs=20.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHh
Q 029446 16 SEMRVVMLGLDAAGKTTILYKLH 38 (193)
Q Consensus 16 ~~~~v~v~G~~~~GKssli~~l~ 38 (193)
....|+|+|++||||||+.+.+.
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 34689999999999999999998
No 391
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.38 E-value=0.0023 Score=46.61 Aligned_cols=23 Identities=30% Similarity=0.437 Sum_probs=20.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 029446 17 EMRVVMLGLDAAGKTTILYKLHI 39 (193)
Q Consensus 17 ~~~v~v~G~~~~GKssli~~l~~ 39 (193)
...|++.|.+||||||+.+.+..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 35799999999999999999875
No 392
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.38 E-value=0.0015 Score=47.34 Aligned_cols=25 Identities=28% Similarity=0.323 Sum_probs=21.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhc
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHI 39 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~ 39 (193)
.....|+++|.+||||||+.+.+..
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999998864
No 393
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.38 E-value=0.00082 Score=47.20 Aligned_cols=21 Identities=38% Similarity=0.528 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 029446 19 RVVMLGLDAAGKTTILYKLHI 39 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~ 39 (193)
.|+|.|.+||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999999875
No 394
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.37 E-value=0.0027 Score=47.47 Aligned_cols=123 Identities=16% Similarity=0.160 Sum_probs=66.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCcc----------cc-cc-----------ccceeEEE--------------E---
Q 029446 16 SEMRVVMLGLDAAGKTTILYKLHIGEVL----------ST-VP-----------TIGFNVEK--------------V--- 56 (193)
Q Consensus 16 ~~~~v~v~G~~~~GKssli~~l~~~~~~----------~~-~~-----------t~~~~~~~--------------~--- 56 (193)
..-.++++|+.||||||+++.+.+-..+ +. .+ ..++.+.. +
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 3457899999999999999998742110 00 00 00111110 0
Q ss_pred EEcCEEEEEEecCCCCCCHHhH------------HhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEE
Q 029446 57 QYKNVIFTVWDVGGQEKLRPLW------------RHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVF 124 (193)
Q Consensus 57 ~~~~~~~~i~D~~g~~~~~~~~------------~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv 124 (193)
......+.+.|++|........ +......+.+++++|+......-+....+..... ..+++
T Consensus 181 ~~~~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~~~~~~~~~~~~~~-------~t~ii 253 (304)
T 1rj9_A 181 KARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKFHEAVG-------LTGVI 253 (304)
T ss_dssp HHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHHHHHHHHHC-------CSEEE
T ss_pred HhCCCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHHHHHHHHHHHHHcC-------CcEEE
Confidence 0013456799999965432211 1223457888999998765443333322222211 14788
Q ss_pred EeCCCCCCCC-CHhHHHhhhCC
Q 029446 125 ANKQDMKGAM-TPMEVCEGLGL 145 (193)
Q Consensus 125 ~nK~Dl~~~~-~~~~~~~~~~~ 145 (193)
+||.|..... ..-.+...++.
T Consensus 254 vTh~d~~a~gg~~l~i~~~~~~ 275 (304)
T 1rj9_A 254 VTKLDGTAKGGVLIPIVRTLKV 275 (304)
T ss_dssp EECTTSSCCCTTHHHHHHHHCC
T ss_pred EECCcccccccHHHHHHHHHCC
Confidence 9999965432 23445555544
No 395
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.37 E-value=0.0019 Score=46.94 Aligned_cols=21 Identities=19% Similarity=0.327 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 029446 19 RVVMLGLDAAGKTTILYKLHI 39 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~ 39 (193)
.|+|+|++|||||||.+.|..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998864
No 396
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.36 E-value=0.0019 Score=45.71 Aligned_cols=21 Identities=19% Similarity=0.254 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 029446 19 RVVMLGLDAAGKTTILYKLHI 39 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~ 39 (193)
-++++|++|+|||||++.+..
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 578899999999999999874
No 397
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.36 E-value=0.002 Score=44.12 Aligned_cols=22 Identities=36% Similarity=0.535 Sum_probs=19.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 029446 18 MRVVMLGLDAAGKTTILYKLHI 39 (193)
Q Consensus 18 ~~v~v~G~~~~GKssli~~l~~ 39 (193)
..|+++|.+||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999988864
No 398
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.33 E-value=0.0026 Score=43.42 Aligned_cols=24 Identities=38% Similarity=0.433 Sum_probs=20.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhc
Q 029446 16 SEMRVVMLGLDAAGKTTILYKLHI 39 (193)
Q Consensus 16 ~~~~v~v~G~~~~GKssli~~l~~ 39 (193)
....|+++|.+||||||+.+.|..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345789999999999999999875
No 399
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.31 E-value=0.0041 Score=45.64 Aligned_cols=26 Identities=15% Similarity=0.264 Sum_probs=22.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcC
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHIG 40 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~~ 40 (193)
...-.+++.|++|+|||++++.+...
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 44567999999999999999998754
No 400
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.30 E-value=0.0021 Score=47.23 Aligned_cols=22 Identities=23% Similarity=0.306 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 029446 19 RVVMLGLDAAGKTTILYKLHIG 40 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~~ 40 (193)
-++++|++|+|||||++.+.+.
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcChHHHHHHHHHHH
Confidence 3899999999999999998864
No 401
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.29 E-value=0.0021 Score=48.61 Aligned_cols=23 Identities=26% Similarity=0.274 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q 029446 18 MRVVMLGLDAAGKTTILYKLHIG 40 (193)
Q Consensus 18 ~~v~v~G~~~~GKssli~~l~~~ 40 (193)
-.+++.|++|+|||||++.+.+.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 45899999999999999998864
No 402
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.29 E-value=0.0024 Score=43.12 Aligned_cols=21 Identities=29% Similarity=0.376 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 029446 19 RVVMLGLDAAGKTTILYKLHI 39 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~ 39 (193)
.|++.|.+||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998865
No 403
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.28 E-value=0.0028 Score=45.43 Aligned_cols=24 Identities=21% Similarity=0.270 Sum_probs=20.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhc
Q 029446 16 SEMRVVMLGLDAAGKTTILYKLHI 39 (193)
Q Consensus 16 ~~~~v~v~G~~~~GKssli~~l~~ 39 (193)
..+.|+|.|++||||||+.+.+..
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 567899999999999999998874
No 404
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.27 E-value=0.0024 Score=49.43 Aligned_cols=22 Identities=36% Similarity=0.443 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 029446 19 RVVMLGLDAAGKTTILYKLHIG 40 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~~ 40 (193)
.++++|+.|||||||++.+.+-
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCChHHHHHHHHhCC
Confidence 5799999999999999999863
No 405
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.26 E-value=0.0015 Score=49.68 Aligned_cols=23 Identities=35% Similarity=0.281 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 029446 19 RVVMLGLDAAGKTTILYKLHIGE 41 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~~~ 41 (193)
.++++|+.|||||||++.+.+-.
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEEECCCCccHHHHHHHHHcCC
Confidence 57899999999999999998743
No 406
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.25 E-value=0.0025 Score=51.14 Aligned_cols=24 Identities=29% Similarity=0.387 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 029446 18 MRVVMLGLDAAGKTTILYKLHIGE 41 (193)
Q Consensus 18 ~~v~v~G~~~~GKssli~~l~~~~ 41 (193)
-.++|+|+.||||||+++.+.+-.
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGGS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 359999999999999999998644
No 407
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.24 E-value=0.003 Score=42.61 Aligned_cols=21 Identities=24% Similarity=0.602 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 029446 19 RVVMLGLDAAGKTTILYKLHI 39 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~ 39 (193)
.|++.|.+||||||+.+.|..
T Consensus 9 ~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998864
No 408
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.24 E-value=0.0023 Score=47.43 Aligned_cols=21 Identities=14% Similarity=0.256 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 029446 19 RVVMLGLDAAGKTTILYKLHI 39 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~ 39 (193)
-++|+|++|+|||||+..+.+
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~ 57 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQAL 57 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 578999999999999998865
No 409
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.24 E-value=0.0043 Score=45.36 Aligned_cols=27 Identities=22% Similarity=0.268 Sum_probs=23.1
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcC
Q 029446 14 GNSEMRVVMLGLDAAGKTTILYKLHIG 40 (193)
Q Consensus 14 ~~~~~~v~v~G~~~~GKssli~~l~~~ 40 (193)
......+++.|++|+|||++++.+...
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 456678999999999999999998763
No 410
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.24 E-value=0.005 Score=46.90 Aligned_cols=26 Identities=31% Similarity=0.440 Sum_probs=21.9
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhc
Q 029446 14 GNSEMRVVMLGLDAAGKTTILYKLHI 39 (193)
Q Consensus 14 ~~~~~~v~v~G~~~~GKssli~~l~~ 39 (193)
.....+|+++|++|+||||+.+.+.+
T Consensus 21 ~g~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 21 DNYRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp TCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred cCCeeEEEEECCCCCcHHHHHHHHHH
Confidence 44567899999999999999987764
No 411
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.23 E-value=0.0025 Score=48.52 Aligned_cols=26 Identities=23% Similarity=0.308 Sum_probs=22.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCc
Q 029446 17 EMRVVMLGLDAAGKTTILYKLHIGEV 42 (193)
Q Consensus 17 ~~~v~v~G~~~~GKssli~~l~~~~~ 42 (193)
-=+++++|+.|+|||||++.+.+...
T Consensus 71 Gq~~gIiG~nGaGKTTLl~~I~g~~~ 96 (347)
T 2obl_A 71 GQRIGIFAGSGVGKSTLLGMICNGAS 96 (347)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34789999999999999999987643
No 412
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.23 E-value=0.0023 Score=49.97 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q 029446 18 MRVVMLGLDAAGKTTILYKLHIG 40 (193)
Q Consensus 18 ~~v~v~G~~~~GKssli~~l~~~ 40 (193)
=.++|+|+.||||||+++.+.+.
T Consensus 168 gii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 168 GIILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHhh
Confidence 36899999999999999998863
No 413
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.22 E-value=0.0026 Score=45.11 Aligned_cols=24 Identities=29% Similarity=0.343 Sum_probs=19.1
Q ss_pred CccE-EEEEcCCCCCHHHHHHHHhc
Q 029446 16 SEMR-VVMLGLDAAGKTTILYKLHI 39 (193)
Q Consensus 16 ~~~~-v~v~G~~~~GKssli~~l~~ 39 (193)
+..| |+++|+|||||+|....|..
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3344 56789999999999988875
No 414
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.22 E-value=0.0028 Score=43.29 Aligned_cols=21 Identities=19% Similarity=0.327 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 029446 19 RVVMLGLDAAGKTTILYKLHI 39 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~ 39 (193)
-.+|+|+.|+|||||++.+..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 568999999999999999864
No 415
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.20 E-value=0.0032 Score=46.73 Aligned_cols=25 Identities=12% Similarity=0.020 Sum_probs=20.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcC
Q 029446 16 SEMRVVMLGLDAAGKTTILYKLHIG 40 (193)
Q Consensus 16 ~~~~v~v~G~~~~GKssli~~l~~~ 40 (193)
.+.-+++.|+||+|||+|.+.+...
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3456777899999999999998753
No 416
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=96.17 E-value=0.016 Score=45.64 Aligned_cols=35 Identities=14% Similarity=0.121 Sum_probs=24.6
Q ss_pred hHHHHhhhh--cCCCccEEEEEcCCCCCHHHHHHHHh
Q 029446 4 AFRKLFDVF--FGNSEMRVVMLGLDAAGKTTILYKLH 38 (193)
Q Consensus 4 ~~~~~~~~~--~~~~~~~v~v~G~~~~GKssli~~l~ 38 (193)
++..++... ......-|.|+|..++|||+|+|.++
T Consensus 52 Al~~iL~~~~i~~~~v~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 52 ALNRILLSEAVRDKEVVAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp HHHHHHSSTTTTTSBEEEEEEEEBTTSSHHHHHHHHH
T ss_pred HHHHHHhccccCCCceEEEEEECCCCCchhHHHHHHH
Confidence 444454431 23455677899999999999999654
No 417
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.17 E-value=0.0022 Score=48.23 Aligned_cols=24 Identities=29% Similarity=0.383 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 029446 18 MRVVMLGLDAAGKTTILYKLHIGE 41 (193)
Q Consensus 18 ~~v~v~G~~~~GKssli~~l~~~~ 41 (193)
.-++|+|..|||||||++.+.+..
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cEEEEEecCCCCHHHHHHHHHhhc
Confidence 357899999999999999999653
No 418
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.16 E-value=0.0027 Score=48.59 Aligned_cols=23 Identities=35% Similarity=0.502 Sum_probs=20.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 029446 17 EMRVVMLGLDAAGKTTILYKLHI 39 (193)
Q Consensus 17 ~~~v~v~G~~~~GKssli~~l~~ 39 (193)
.-.++++|+.||||||+++.+.+
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHh
Confidence 34689999999999999999875
No 419
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.16 E-value=0.0029 Score=44.45 Aligned_cols=21 Identities=29% Similarity=0.333 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 029446 19 RVVMLGLDAAGKTTILYKLHI 39 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~ 39 (193)
-++++|++|+|||||+..+..
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 579999999999999999986
No 420
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=96.13 E-value=0.0015 Score=49.93 Aligned_cols=24 Identities=38% Similarity=0.412 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCc
Q 029446 19 RVVMLGLDAAGKTTILYKLHIGEV 42 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~~~~ 42 (193)
.++++|+.|||||||++.+.+-..
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~~ 56 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLDV 56 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 578999999999999999987543
No 421
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.11 E-value=0.0037 Score=43.44 Aligned_cols=25 Identities=24% Similarity=0.211 Sum_probs=22.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcC
Q 029446 16 SEMRVVMLGLDAAGKTTILYKLHIG 40 (193)
Q Consensus 16 ~~~~v~v~G~~~~GKssli~~l~~~ 40 (193)
..+.|++.|.+||||||+.+.|...
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHh
Confidence 5688999999999999999988753
No 422
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.11 E-value=0.0046 Score=46.85 Aligned_cols=22 Identities=23% Similarity=0.297 Sum_probs=19.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 029446 18 MRVVMLGLDAAGKTTILYKLHI 39 (193)
Q Consensus 18 ~~v~v~G~~~~GKssli~~l~~ 39 (193)
..+++.|++|+||||+++.+.+
T Consensus 37 ~~~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 37 PHLLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp CCEEEECSTTSSHHHHHHTHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3499999999999999998876
No 423
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.11 E-value=0.0031 Score=45.02 Aligned_cols=23 Identities=30% Similarity=0.260 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q 029446 18 MRVVMLGLDAAGKTTILYKLHIG 40 (193)
Q Consensus 18 ~~v~v~G~~~~GKssli~~l~~~ 40 (193)
--++++|++|+|||||+..+...
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHH
Confidence 36789999999999999999873
No 424
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.10 E-value=0.0027 Score=50.21 Aligned_cols=25 Identities=32% Similarity=0.343 Sum_probs=21.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcC
Q 029446 16 SEMRVVMLGLDAAGKTTILYKLHIG 40 (193)
Q Consensus 16 ~~~~v~v~G~~~~GKssli~~l~~~ 40 (193)
.--.++|+|+.|||||||++.+.+-
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCc
Confidence 4457899999999999999998764
No 425
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.09 E-value=0.0038 Score=45.22 Aligned_cols=23 Identities=26% Similarity=0.301 Sum_probs=20.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 029446 17 EMRVVMLGLDAAGKTTILYKLHI 39 (193)
Q Consensus 17 ~~~v~v~G~~~~GKssli~~l~~ 39 (193)
.-.+++.|++|+|||++++.+.+
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHH
Confidence 34699999999999999999875
No 426
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.08 E-value=0.0042 Score=43.61 Aligned_cols=25 Identities=28% Similarity=0.489 Sum_probs=21.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhc
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHI 39 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~ 39 (193)
.....|+++|.+||||||+.+.+..
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHH
Confidence 3456789999999999999998865
No 427
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.06 E-value=0.0047 Score=44.11 Aligned_cols=25 Identities=20% Similarity=0.299 Sum_probs=21.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcC
Q 029446 16 SEMRVVMLGLDAAGKTTILYKLHIG 40 (193)
Q Consensus 16 ~~~~v~v~G~~~~GKssli~~l~~~ 40 (193)
....|++.|.+||||||+++.+...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 5578999999999999999998753
No 428
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.05 E-value=0.0033 Score=45.63 Aligned_cols=23 Identities=22% Similarity=0.281 Sum_probs=20.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 029446 17 EMRVVMLGLDAAGKTTILYKLHI 39 (193)
Q Consensus 17 ~~~v~v~G~~~~GKssli~~l~~ 39 (193)
.-.|+++|.+||||||+.+.+..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999998865
No 429
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.03 E-value=0.0042 Score=41.26 Aligned_cols=20 Identities=20% Similarity=0.478 Sum_probs=17.7
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 029446 19 RVVMLGLDAAGKTTILYKLH 38 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~ 38 (193)
-.+|+|+.|+||||++..+.
T Consensus 25 ~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 45889999999999999875
No 430
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=95.96 E-value=0.0061 Score=48.31 Aligned_cols=36 Identities=22% Similarity=0.339 Sum_probs=26.3
Q ss_pred HHHHhhhhcCCCccEEEEEcCCCCCHHHHHHHHhcC
Q 029446 5 FRKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIG 40 (193)
Q Consensus 5 ~~~~~~~~~~~~~~~v~v~G~~~~GKssli~~l~~~ 40 (193)
+.++.........-+++++|++|+|||++++.+...
T Consensus 189 i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~ 224 (468)
T 3pxg_A 189 IQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQ 224 (468)
T ss_dssp HHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHH
Confidence 334444433345668899999999999999988754
No 431
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.95 E-value=0.0075 Score=45.55 Aligned_cols=23 Identities=22% Similarity=0.353 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q 029446 18 MRVVMLGLDAAGKTTILYKLHIG 40 (193)
Q Consensus 18 ~~v~v~G~~~~GKssli~~l~~~ 40 (193)
..+++.|++|+|||++++.+...
T Consensus 59 ~~~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 34999999999999999988764
No 432
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.94 E-value=0.0084 Score=44.82 Aligned_cols=24 Identities=17% Similarity=0.206 Sum_probs=21.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q 029446 17 EMRVVMLGLDAAGKTTILYKLHIG 40 (193)
Q Consensus 17 ~~~v~v~G~~~~GKssli~~l~~~ 40 (193)
.-.+++.|++|+|||+|+..+...
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~ 175 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHE 175 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999888753
No 433
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=95.94 E-value=0.0036 Score=45.60 Aligned_cols=28 Identities=29% Similarity=0.233 Sum_probs=22.0
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhcC
Q 029446 13 FGNSEMRVVMLGLDAAGKTTILYKLHIG 40 (193)
Q Consensus 13 ~~~~~~~v~v~G~~~~GKssli~~l~~~ 40 (193)
...+...|++.|..||||||+++.|...
T Consensus 20 ~~~~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 20 EGTRIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp ---CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred cccCceEEEEECCCCCCHHHHHHHHHHh
Confidence 3345678999999999999999988754
No 434
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.94 E-value=0.0055 Score=43.82 Aligned_cols=25 Identities=16% Similarity=0.283 Sum_probs=21.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhc
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHI 39 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~ 39 (193)
.....|+|+|.+||||||+.+.+..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999998875
No 435
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.93 E-value=0.0063 Score=46.00 Aligned_cols=23 Identities=22% Similarity=0.329 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q 029446 18 MRVVMLGLDAAGKTTILYKLHIG 40 (193)
Q Consensus 18 ~~v~v~G~~~~GKssli~~l~~~ 40 (193)
..+++.|++|+||||+++.+.+.
T Consensus 47 ~~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 47 PHLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 34899999999999999998764
No 436
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.93 E-value=0.0046 Score=49.94 Aligned_cols=24 Identities=25% Similarity=0.260 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCc
Q 029446 19 RVVMLGLDAAGKTTILYKLHIGEV 42 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~~~~ 42 (193)
.++++|+.|||||||++.+.+-..
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~Gl~~ 72 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAGQLI 72 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 689999999999999999987543
No 437
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.92 E-value=0.0042 Score=50.12 Aligned_cols=25 Identities=32% Similarity=0.327 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCc
Q 029446 18 MRVVMLGLDAAGKTTILYKLHIGEV 42 (193)
Q Consensus 18 ~~v~v~G~~~~GKssli~~l~~~~~ 42 (193)
=-++++|+.|||||||++.+.+-..
T Consensus 26 ei~gLiGpNGaGKSTLlkiL~Gl~~ 50 (538)
T 3ozx_A 26 TILGVLGKNGVGKTTVLKILAGEII 50 (538)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCC
Confidence 3579999999999999999987543
No 438
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.91 E-value=0.0051 Score=45.60 Aligned_cols=22 Identities=18% Similarity=0.282 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 029446 18 MRVVMLGLDAAGKTTILYKLHI 39 (193)
Q Consensus 18 ~~v~v~G~~~~GKssli~~l~~ 39 (193)
..|+++|.+||||||+.+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999875
No 439
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=95.90 E-value=0.0044 Score=48.73 Aligned_cols=26 Identities=15% Similarity=0.123 Sum_probs=22.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCc
Q 029446 17 EMRVVMLGLDAAGKTTILYKLHIGEV 42 (193)
Q Consensus 17 ~~~v~v~G~~~~GKssli~~l~~~~~ 42 (193)
-=+++|+|+.|+|||||++.+.+...
T Consensus 157 Gq~~~IvG~sGsGKSTLl~~Iag~~~ 182 (438)
T 2dpy_A 157 GQRMGLFAGSGVGKSVLLGMMARYTR 182 (438)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcccC
Confidence 34789999999999999999987543
No 440
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=95.90 E-value=0.0042 Score=47.81 Aligned_cols=24 Identities=25% Similarity=0.155 Sum_probs=21.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhc
Q 029446 16 SEMRVVMLGLDAAGKTTILYKLHI 39 (193)
Q Consensus 16 ~~~~v~v~G~~~~GKssli~~l~~ 39 (193)
..-.++++|++|+|||||++.+.+
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 445789999999999999999885
No 441
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=95.90 E-value=0.008 Score=44.71 Aligned_cols=25 Identities=20% Similarity=0.243 Sum_probs=21.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcC
Q 029446 16 SEMRVVMLGLDAAGKTTILYKLHIG 40 (193)
Q Consensus 16 ~~~~v~v~G~~~~GKssli~~l~~~ 40 (193)
..-.+++.|++|+|||++++.+.+.
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCcCHHHHHHHHHHH
Confidence 4456999999999999999998853
No 442
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=95.85 E-value=0.0049 Score=50.25 Aligned_cols=23 Identities=26% Similarity=0.280 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 029446 19 RVVMLGLDAAGKTTILYKLHIGE 41 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~~~ 41 (193)
.++++|+.|+|||||++.+.+-.
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTTT
T ss_pred EEEEECCCCCCHHHHHHHHhhcc
Confidence 68999999999999999998743
No 443
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=95.84 E-value=0.004 Score=46.81 Aligned_cols=30 Identities=7% Similarity=0.047 Sum_probs=24.7
Q ss_pred hcCCCccEEEEEcCCCCCHHHHHHHHhcCC
Q 029446 12 FFGNSEMRVVMLGLDAAGKTTILYKLHIGE 41 (193)
Q Consensus 12 ~~~~~~~~v~v~G~~~~GKssli~~l~~~~ 41 (193)
......-.+++.|+||+|||++++.+....
T Consensus 40 i~~~~~~~lli~GpPGTGKT~~v~~v~~~L 69 (318)
T 3te6_A 40 LMSSQNKLFYITNADDSTKFQLVNDVMDEL 69 (318)
T ss_dssp HHTTCCCEEEEECCCSHHHHHHHHHHHHHH
T ss_pred hcCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 345677789999999999999999987543
No 444
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.83 E-value=0.0049 Score=43.58 Aligned_cols=21 Identities=29% Similarity=0.303 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 029446 19 RVVMLGLDAAGKTTILYKLHI 39 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~ 39 (193)
.+++.|++|+|||++++.+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998865
No 445
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=95.82 E-value=0.0046 Score=49.11 Aligned_cols=22 Identities=23% Similarity=0.318 Sum_probs=19.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 029446 18 MRVVMLGLDAAGKTTILYKLHI 39 (193)
Q Consensus 18 ~~v~v~G~~~~GKssli~~l~~ 39 (193)
=.++|+|+.|||||||++.+.+
T Consensus 30 e~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhc
Confidence 4678999999999999999876
No 446
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.80 E-value=0.0049 Score=45.26 Aligned_cols=21 Identities=19% Similarity=0.267 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 029446 19 RVVMLGLDAAGKTTILYKLHI 39 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~ 39 (193)
-++|+|++|+|||||+..+..
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 578999999999999988875
No 447
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.80 E-value=0.0071 Score=43.68 Aligned_cols=24 Identities=21% Similarity=0.278 Sum_probs=20.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhc
Q 029446 16 SEMRVVMLGLDAAGKTTILYKLHI 39 (193)
Q Consensus 16 ~~~~v~v~G~~~~GKssli~~l~~ 39 (193)
..-.+++.|++|+|||++++.+..
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 345689999999999999999875
No 448
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=95.80 E-value=0.0049 Score=45.58 Aligned_cols=24 Identities=17% Similarity=0.277 Sum_probs=21.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q 029446 17 EMRVVMLGLDAAGKTTILYKLHIG 40 (193)
Q Consensus 17 ~~~v~v~G~~~~GKssli~~l~~~ 40 (193)
.-.+++.|++|+|||++++.+.+.
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 457999999999999999998763
No 449
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=95.77 E-value=0.0055 Score=49.94 Aligned_cols=23 Identities=26% Similarity=0.275 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 029446 19 RVVMLGLDAAGKTTILYKLHIGE 41 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~~~ 41 (193)
.++++|+.|+|||||++.+.+-.
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999998743
No 450
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.74 E-value=0.0055 Score=50.17 Aligned_cols=24 Identities=25% Similarity=0.261 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCc
Q 029446 19 RVVMLGLDAAGKTTILYKLHIGEV 42 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~~~~ 42 (193)
.++++|+.|+|||||++.+.+-..
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gll~ 128 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGKQK 128 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCChHHHHHHHHhcCCC
Confidence 579999999999999999987543
No 451
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=95.71 E-value=0.0059 Score=46.81 Aligned_cols=20 Identities=25% Similarity=0.439 Sum_probs=17.9
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 029446 19 RVVMLGLDAAGKTTILYKLH 38 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~ 38 (193)
-++|+|+.|||||||++.++
T Consensus 25 ~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 36699999999999999987
No 452
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.71 E-value=0.01 Score=45.22 Aligned_cols=22 Identities=27% Similarity=0.366 Sum_probs=19.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 029446 18 MRVVMLGLDAAGKTTILYKLHI 39 (193)
Q Consensus 18 ~~v~v~G~~~~GKssli~~l~~ 39 (193)
-.+++.|++|+|||++++.+..
T Consensus 71 ~~vLl~GppGtGKT~la~~la~ 92 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQ 92 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998875
No 453
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.71 E-value=0.01 Score=46.51 Aligned_cols=31 Identities=19% Similarity=0.144 Sum_probs=23.9
Q ss_pred hhhhcCCCccEEEEEcCCCCCHHHHHHHHhc
Q 029446 9 FDVFFGNSEMRVVMLGLDAAGKTTILYKLHI 39 (193)
Q Consensus 9 ~~~~~~~~~~~v~v~G~~~~GKssli~~l~~ 39 (193)
|...--...--|++.|+||+|||+|++.+.+
T Consensus 207 f~~~g~~~prGvLLyGPPGTGKTllAkAiA~ 237 (434)
T 4b4t_M 207 FKDMGIRAPKGALMYGPPGTGKTLLARACAA 237 (434)
T ss_dssp HHHHCCCCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred HHhCCCCCCCeeEEECcCCCCHHHHHHHHHH
Confidence 3333334456799999999999999999875
No 454
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.70 E-value=0.01 Score=43.99 Aligned_cols=26 Identities=23% Similarity=0.331 Sum_probs=21.2
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhc
Q 029446 14 GNSEMRVVMLGLDAAGKTTILYKLHI 39 (193)
Q Consensus 14 ~~~~~~v~v~G~~~~GKssli~~l~~ 39 (193)
......+++.|++|+|||++++.+..
T Consensus 64 ~~~~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 64 ETPTLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp SCCCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHH
Confidence 34456799999999999999986654
No 455
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.68 E-value=0.0071 Score=43.24 Aligned_cols=24 Identities=33% Similarity=0.454 Sum_probs=20.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhc
Q 029446 16 SEMRVVMLGLDAAGKTTILYKLHI 39 (193)
Q Consensus 16 ~~~~v~v~G~~~~GKssli~~l~~ 39 (193)
..++++++|.+||||||+...+..
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHHH
T ss_pred cccceeeECCCCCCHHHHHHHHHH
Confidence 468999999999999999988865
No 456
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.68 E-value=0.0039 Score=46.25 Aligned_cols=24 Identities=17% Similarity=0.225 Sum_probs=18.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhc
Q 029446 16 SEMRVVMLGLDAAGKTTILYKLHI 39 (193)
Q Consensus 16 ~~~~v~v~G~~~~GKssli~~l~~ 39 (193)
+.+.|+|.|+.||||||+.+.|..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999988764
No 457
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=95.66 E-value=0.005 Score=50.31 Aligned_cols=23 Identities=26% Similarity=0.271 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 029446 19 RVVMLGLDAAGKTTILYKLHIGE 41 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~~~ 41 (193)
.++++|+.|+|||||++.+.+-.
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCc
Confidence 68999999999999999998743
No 458
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.64 E-value=0.0074 Score=41.95 Aligned_cols=21 Identities=24% Similarity=0.376 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 029446 19 RVVMLGLDAAGKTTILYKLHI 39 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~ 39 (193)
.|+|.|.+||||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998865
No 459
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.61 E-value=0.0095 Score=46.48 Aligned_cols=25 Identities=28% Similarity=0.426 Sum_probs=21.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcC
Q 029446 16 SEMRVVMLGLDAAGKTTILYKLHIG 40 (193)
Q Consensus 16 ~~~~v~v~G~~~~GKssli~~l~~~ 40 (193)
...-|+++|.+||||||+.+.+...
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 4567899999999999999998753
No 460
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.60 E-value=0.0072 Score=49.50 Aligned_cols=24 Identities=29% Similarity=0.274 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCc
Q 029446 19 RVVMLGLDAAGKTTILYKLHIGEV 42 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~~~~ 42 (193)
.++++|+.|+|||||++.+.+-..
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~Gll~ 142 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAGQLI 142 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCChHHHHHHHHhCCCC
Confidence 689999999999999999987543
No 461
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.60 E-value=0.0065 Score=45.57 Aligned_cols=24 Identities=21% Similarity=0.184 Sum_probs=20.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q 029446 17 EMRVVMLGLDAAGKTTILYKLHIG 40 (193)
Q Consensus 17 ~~~v~v~G~~~~GKssli~~l~~~ 40 (193)
.-.+++.|++|+|||+|++.+.+.
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 346899999999999999988753
No 462
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.60 E-value=0.0067 Score=48.95 Aligned_cols=24 Identities=29% Similarity=0.207 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCc
Q 029446 19 RVVMLGLDAAGKTTILYKLHIGEV 42 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~~~~ 42 (193)
.++|+|+.|||||||++.+.+-..
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~~ 319 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEIT 319 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 478999999999999999987543
No 463
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.59 E-value=0.0067 Score=45.13 Aligned_cols=111 Identities=18% Similarity=0.157 Sum_probs=59.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCcc-----------cc-ccc-----------cceeEEEE-----------EEcCE
Q 029446 16 SEMRVVMLGLDAAGKTTILYKLHIGEVL-----------ST-VPT-----------IGFNVEKV-----------QYKNV 61 (193)
Q Consensus 16 ~~~~v~v~G~~~~GKssli~~l~~~~~~-----------~~-~~t-----------~~~~~~~~-----------~~~~~ 61 (193)
..-.++++|+.|+||||++..+...... +. .++ .+...... .....
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~~~~ 183 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELFSEY 183 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHGGGS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHhcCC
Confidence 3457899999999999999888531110 00 000 01110000 11356
Q ss_pred EEEEEecCCCCCCHHh-H---Hhhhc--CCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 029446 62 IFTVWDVGGQEKLRPL-W---RHYFN--NTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA 133 (193)
Q Consensus 62 ~~~i~D~~g~~~~~~~-~---~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 133 (193)
.+.++||+|....... . ...+. ..+.+++|+|++.. ...+.++...+. .-+. .-+|.||.|....
T Consensus 184 dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~--~~~~~~~~~~~~----~l~~-~giVltk~D~~~~ 254 (296)
T 2px0_A 184 DHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK--YEDMKHIVKRFS----SVPV-NQYIFTKIDETTS 254 (296)
T ss_dssp SEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC--HHHHHHHTTTTS----SSCC-CEEEEECTTTCSC
T ss_pred CEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--HHHHHHHHHHHh----cCCC-CEEEEeCCCcccc
Confidence 8999999997654321 1 12222 36778999988643 233333222221 1111 2466799997654
No 464
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.59 E-value=0.0059 Score=49.95 Aligned_cols=23 Identities=35% Similarity=0.381 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 029446 19 RVVMLGLDAAGKTTILYKLHIGE 41 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~~~ 41 (193)
.++++|+.|+|||||++.+.+-.
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCc
Confidence 78999999999999999988643
No 465
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.57 E-value=0.0074 Score=43.09 Aligned_cols=21 Identities=24% Similarity=0.243 Sum_probs=17.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 029446 19 RVVMLGLDAAGKTTILYKLHI 39 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~ 39 (193)
-+++.|++|+|||||+..+..
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999777753
No 466
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=95.57 E-value=0.005 Score=50.16 Aligned_cols=22 Identities=23% Similarity=0.419 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 029446 19 RVVMLGLDAAGKTTILYKLHIG 40 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~~ 40 (193)
.++++|+.|+|||||++.+.+-
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g~ 390 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPRF 390 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTTS
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 6899999999999999988764
No 467
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.56 E-value=0.011 Score=44.98 Aligned_cols=26 Identities=19% Similarity=0.327 Sum_probs=21.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcC
Q 029446 15 NSEMRVVMLGLDAAGKTTILYKLHIG 40 (193)
Q Consensus 15 ~~~~~v~v~G~~~~GKssli~~l~~~ 40 (193)
...-.++|.|++|+|||||++.+.+.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 34457899999999999999998763
No 468
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.55 E-value=0.013 Score=46.03 Aligned_cols=31 Identities=19% Similarity=0.191 Sum_probs=24.0
Q ss_pred hhhhcCCCccEEEEEcCCCCCHHHHHHHHhc
Q 029446 9 FDVFFGNSEMRVVMLGLDAAGKTTILYKLHI 39 (193)
Q Consensus 9 ~~~~~~~~~~~v~v~G~~~~GKssli~~l~~ 39 (193)
|...--...--|++.|+||+|||+|++.+.+
T Consensus 207 f~~~g~~~prGvLL~GPPGtGKTllAkAiA~ 237 (437)
T 4b4t_L 207 FQRVGIKPPKGVLLYGPPGTGKTLLAKAVAA 237 (437)
T ss_dssp HHHHCCCCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred HHhCCCCCCCeEEEECCCCCcHHHHHHHHHH
Confidence 4433334456799999999999999999875
No 469
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.54 E-value=0.0079 Score=48.55 Aligned_cols=24 Identities=29% Similarity=0.272 Sum_probs=21.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCc
Q 029446 19 RVVMLGLDAAGKTTILYKLHIGEV 42 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~~~~ 42 (193)
.++|+|+.|+|||||++.+.+-..
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl~~ 337 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGVEE 337 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 578999999999999999988543
No 470
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.52 E-value=0.0061 Score=40.06 Aligned_cols=25 Identities=16% Similarity=0.126 Sum_probs=21.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcC
Q 029446 16 SEMRVVMLGLDAAGKTTILYKLHIG 40 (193)
Q Consensus 16 ~~~~v~v~G~~~~GKssli~~l~~~ 40 (193)
....|++.|++|+|||++.+.+...
T Consensus 26 ~~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 26 RTSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp CSSCEEEEEETTCCHHHHHGGGCCT
T ss_pred CCCcEEEECCCCccHHHHHHHHHHh
Confidence 4567999999999999999888754
No 471
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.51 E-value=0.013 Score=45.80 Aligned_cols=24 Identities=21% Similarity=0.306 Sum_probs=20.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhc
Q 029446 16 SEMRVVMLGLDAAGKTTILYKLHI 39 (193)
Q Consensus 16 ~~~~v~v~G~~~~GKssli~~l~~ 39 (193)
..--|++.|+||+|||+|++.+.+
T Consensus 205 ~prGiLL~GPPGtGKT~lakAiA~ 228 (428)
T 4b4t_K 205 PPRGVLLYGPPGTGKTMLVKAVAN 228 (428)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 334599999999999999999875
No 472
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.51 E-value=0.0089 Score=42.84 Aligned_cols=24 Identities=29% Similarity=0.254 Sum_probs=20.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q 029446 17 EMRVVMLGLDAAGKTTILYKLHIG 40 (193)
Q Consensus 17 ~~~v~v~G~~~~GKssli~~l~~~ 40 (193)
...|++.|..||||||+++.|...
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 356899999999999999998754
No 473
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.49 E-value=0.0066 Score=49.54 Aligned_cols=22 Identities=27% Similarity=0.351 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 029446 19 RVVMLGLDAAGKTTILYKLHIG 40 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~~ 40 (193)
.++++|+.|+|||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~ 392 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPRL 392 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999998764
No 474
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.47 E-value=0.0076 Score=45.90 Aligned_cols=23 Identities=22% Similarity=0.189 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 029446 19 RVVMLGLDAAGKTTILYKLHIGE 41 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~~~ 41 (193)
-+.|+|++|+|||||+..+....
T Consensus 133 i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 133 ITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999988643
No 475
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.46 E-value=0.014 Score=44.58 Aligned_cols=22 Identities=41% Similarity=0.450 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 029446 19 RVVMLGLDAAGKTTILYKLHIG 40 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~~ 40 (193)
.++|.|++|+||||+++.+.+.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999998754
No 476
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.43 E-value=0.0091 Score=48.91 Aligned_cols=24 Identities=29% Similarity=0.272 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCc
Q 029446 19 RVVMLGLDAAGKTTILYKLHIGEV 42 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~~~~ 42 (193)
.++|+|+.|+|||||++.+.+-..
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~~ 407 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVEE 407 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 578999999999999999987543
No 477
>3uc9_A Increased recombination centers protein 6; rossmann-fold, clathrin accessory factor; 1.80A {Saccharomyces cerevisiae}
Probab=95.42 E-value=0.059 Score=38.37 Aligned_cols=28 Identities=18% Similarity=0.007 Sum_probs=23.3
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCC
Q 029446 14 GNSEMRVVMLGLDAAGKTTILYKLHIGE 41 (193)
Q Consensus 14 ~~~~~~v~v~G~~~~GKssli~~l~~~~ 41 (193)
++..+-|+..|.++.|||+|++++++..
T Consensus 26 P~nkilvl~~~~~~~~~~~~~~~lf~~~ 53 (233)
T 3uc9_A 26 PQNKILVLSDHPHNFLKTQFLQDLFHCS 53 (233)
T ss_dssp CCCEEEEEEEGGGHHHHHHHHHHHHCCC
T ss_pred CCCceEEEecCcccccHHHHHHHHhccc
Confidence 4566677777999999999999999874
No 478
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.36 E-value=0.014 Score=45.27 Aligned_cols=31 Identities=19% Similarity=0.230 Sum_probs=23.6
Q ss_pred hhhhcCCCccEEEEEcCCCCCHHHHHHHHhc
Q 029446 9 FDVFFGNSEMRVVMLGLDAAGKTTILYKLHI 39 (193)
Q Consensus 9 ~~~~~~~~~~~v~v~G~~~~GKssli~~l~~ 39 (193)
|...--...--|++.|+||+|||.|++.+.+
T Consensus 174 f~~~gi~~prGvLL~GPPGTGKTllAkAiA~ 204 (405)
T 4b4t_J 174 FESLGIAQPKGVILYGPPGTGKTLLARAVAH 204 (405)
T ss_dssp HHHHTCCCCCCEEEESCSSSSHHHHHHHHHH
T ss_pred HHhCCCCCCCceEEeCCCCCCHHHHHHHHHH
Confidence 3333333445799999999999999999875
No 479
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.36 E-value=0.0089 Score=44.22 Aligned_cols=24 Identities=29% Similarity=0.470 Sum_probs=20.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhc
Q 029446 16 SEMRVVMLGLDAAGKTTILYKLHI 39 (193)
Q Consensus 16 ~~~~v~v~G~~~~GKssli~~l~~ 39 (193)
..-.+++.|++|+|||++++.+..
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999998875
No 480
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.34 E-value=0.011 Score=41.30 Aligned_cols=24 Identities=21% Similarity=0.290 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 029446 18 MRVVMLGLDAAGKTTILYKLHIGE 41 (193)
Q Consensus 18 ~~v~v~G~~~~GKssli~~l~~~~ 41 (193)
..|+++|++|+|||+|...|....
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC
Confidence 468999999999999999998653
No 481
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.30 E-value=0.0093 Score=44.84 Aligned_cols=23 Identities=13% Similarity=0.289 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q 029446 18 MRVVMLGLDAAGKTTILYKLHIG 40 (193)
Q Consensus 18 ~~v~v~G~~~~GKssli~~l~~~ 40 (193)
-.+++.|++|+|||+|++.+...
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHHHHH
Confidence 46999999999999999998864
No 482
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.30 E-value=0.0098 Score=48.71 Aligned_cols=24 Identities=33% Similarity=0.390 Sum_probs=21.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCcc
Q 029446 20 VVMLGLDAAGKTTILYKLHIGEVL 43 (193)
Q Consensus 20 v~v~G~~~~GKssli~~l~~~~~~ 43 (193)
++++|+.|+|||||++.+.+-..+
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl~~p 404 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGALKP 404 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTSSCC
T ss_pred EEEECCCCCcHHHHHHHHhcCCCC
Confidence 799999999999999999875543
No 483
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=95.29 E-value=0.011 Score=41.32 Aligned_cols=20 Identities=20% Similarity=0.478 Sum_probs=17.4
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 029446 19 RVVMLGLDAAGKTTILYKLH 38 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~ 38 (193)
-.+|+|+.|+||||++..+.
T Consensus 25 ~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 25 INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHH
Confidence 45789999999999998874
No 484
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.28 E-value=0.01 Score=41.68 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=20.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 029446 17 EMRVVMLGLDAAGKTTILYKLHI 39 (193)
Q Consensus 17 ~~~v~v~G~~~~GKssli~~l~~ 39 (193)
.+.|++.|.+||||||+.+.+..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999988865
No 485
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=95.26 E-value=0.0065 Score=44.16 Aligned_cols=22 Identities=23% Similarity=0.285 Sum_probs=19.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 029446 18 MRVVMLGLDAAGKTTILYKLHI 39 (193)
Q Consensus 18 ~~v~v~G~~~~GKssli~~l~~ 39 (193)
-.+++.|++|+|||++++.+..
T Consensus 45 ~~vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 45 KGVLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp SCCCCBCSSCSSHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHH
Confidence 3488999999999999999875
No 486
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=95.24 E-value=0.013 Score=45.40 Aligned_cols=25 Identities=28% Similarity=0.535 Sum_probs=22.0
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHh
Q 029446 14 GNSEMRVVMLGLDAAGKTTILYKLH 38 (193)
Q Consensus 14 ~~~~~~v~v~G~~~~GKssli~~l~ 38 (193)
..+.+|++++|...|||||+++.+-
T Consensus 37 ~~~~~klLLLG~geSGKSTi~KQmk 61 (402)
T 1azs_C 37 YRATHRLLLLGAGESGKSTIVKQMR 61 (402)
T ss_dssp CTTEEEEEEEESTTSSHHHHHHHHH
T ss_pred hhccceEEEecCCCCchhhHHHHHH
Confidence 3577999999999999999988873
No 487
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=95.24 E-value=0.01 Score=44.08 Aligned_cols=23 Identities=26% Similarity=0.317 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q 029446 18 MRVVMLGLDAAGKTTILYKLHIG 40 (193)
Q Consensus 18 ~~v~v~G~~~~GKssli~~l~~~ 40 (193)
-.+++.|++|+|||++++.+...
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHH
Confidence 36999999999999999988764
No 488
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=95.19 E-value=0.016 Score=48.72 Aligned_cols=36 Identities=22% Similarity=0.339 Sum_probs=26.9
Q ss_pred HHHHhhhhcCCCccEEEEEcCCCCCHHHHHHHHhcC
Q 029446 5 FRKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIG 40 (193)
Q Consensus 5 ~~~~~~~~~~~~~~~v~v~G~~~~GKssli~~l~~~ 40 (193)
++++.........-+++++|++|+|||++++.+...
T Consensus 189 i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~ 224 (758)
T 3pxi_A 189 IQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQ 224 (758)
T ss_dssp HHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHH
Confidence 444444444456668999999999999999888654
No 489
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=95.18 E-value=0.019 Score=42.53 Aligned_cols=25 Identities=20% Similarity=0.203 Sum_probs=20.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcC
Q 029446 16 SEMRVVMLGLDAAGKTTILYKLHIG 40 (193)
Q Consensus 16 ~~~~v~v~G~~~~GKssli~~l~~~ 40 (193)
....+++.|++|+|||+++..+...
T Consensus 37 ~~~~~ll~G~~G~GKt~la~~l~~~ 61 (319)
T 2chq_A 37 NIPHLLFSGPPGTGKTATAIALARD 61 (319)
T ss_dssp CCCCEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCeEEEECcCCcCHHHHHHHHHHH
Confidence 3335999999999999999888754
No 490
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.18 E-value=0.02 Score=48.16 Aligned_cols=36 Identities=19% Similarity=0.285 Sum_probs=27.6
Q ss_pred HHHHhhhhcCCCccEEEEEcCCCCCHHHHHHHHhcC
Q 029446 5 FRKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIG 40 (193)
Q Consensus 5 ~~~~~~~~~~~~~~~v~v~G~~~~GKssli~~l~~~ 40 (193)
++++.........-.++++|++|+|||++++.+...
T Consensus 195 i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~ 230 (758)
T 1r6b_X 195 LERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWR 230 (758)
T ss_dssp HHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHH
Confidence 445555445556678999999999999999988753
No 491
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.16 E-value=0.011 Score=44.39 Aligned_cols=24 Identities=13% Similarity=0.252 Sum_probs=20.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q 029446 17 EMRVVMLGLDAAGKTTILYKLHIG 40 (193)
Q Consensus 17 ~~~v~v~G~~~~GKssli~~l~~~ 40 (193)
.-.+++.|++|+|||++++.+...
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 347999999999999999998753
No 492
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.13 E-value=0.021 Score=44.56 Aligned_cols=31 Identities=16% Similarity=0.211 Sum_probs=23.9
Q ss_pred hhhhcCCCccEEEEEcCCCCCHHHHHHHHhc
Q 029446 9 FDVFFGNSEMRVVMLGLDAAGKTTILYKLHI 39 (193)
Q Consensus 9 ~~~~~~~~~~~v~v~G~~~~GKssli~~l~~ 39 (193)
|...--...--|++.|+||+|||+|++.+.+
T Consensus 208 f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~ 238 (437)
T 4b4t_I 208 YEEMGIKPPKGVILYGAPGTGKTLLAKAVAN 238 (437)
T ss_dssp HHHHTCCCCSEEEEESSTTTTHHHHHHHHHH
T ss_pred HHhCCCCCCCCCceECCCCchHHHHHHHHHH
Confidence 3333334456799999999999999999875
No 493
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=95.11 E-value=0.015 Score=39.90 Aligned_cols=21 Identities=19% Similarity=0.154 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 029446 20 VVMLGLDAAGKTTILYKLHIG 40 (193)
Q Consensus 20 v~v~G~~~~GKssli~~l~~~ 40 (193)
++|+|.++||||+|..++...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 789999999999999999865
No 494
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.11 E-value=0.024 Score=43.26 Aligned_cols=25 Identities=24% Similarity=0.328 Sum_probs=21.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcC
Q 029446 16 SEMRVVMLGLDAAGKTTILYKLHIG 40 (193)
Q Consensus 16 ~~~~v~v~G~~~~GKssli~~l~~~ 40 (193)
..-.+++.|++|+|||++++.+...
T Consensus 44 ~~~~vll~G~~G~GKT~la~~l~~~ 68 (384)
T 2qby_B 44 VKFSNLFLGLTGTGKTFVSKYIFNE 68 (384)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHH
Confidence 3458999999999999999998753
No 495
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=95.10 E-value=0.021 Score=41.70 Aligned_cols=21 Identities=24% Similarity=0.360 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 029446 19 RVVMLGLDAAGKTTILYKLHI 39 (193)
Q Consensus 19 ~v~v~G~~~~GKssli~~l~~ 39 (193)
-+++.|+||+|||.|+..+..
T Consensus 106 ~~~l~GppgtGKt~~a~ala~ 126 (267)
T 1u0j_A 106 TIWLFGPATTGKTNIAEAIAH 126 (267)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 499999999999999998875
No 496
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.07 E-value=0.021 Score=42.45 Aligned_cols=23 Identities=26% Similarity=0.316 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q 029446 18 MRVVMLGLDAAGKTTILYKLHIG 40 (193)
Q Consensus 18 ~~v~v~G~~~~GKssli~~l~~~ 40 (193)
..+++.|++|+|||++++.+...
T Consensus 43 ~~~ll~G~~G~GKt~la~~l~~~ 65 (323)
T 1sxj_B 43 PHMIISGMPGIGKTTSVHCLAHE 65 (323)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 34999999999999999988754
No 497
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=95.05 E-value=0.023 Score=44.77 Aligned_cols=23 Identities=22% Similarity=0.257 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q 029446 18 MRVVMLGLDAAGKTTILYKLHIG 40 (193)
Q Consensus 18 ~~v~v~G~~~~GKssli~~l~~~ 40 (193)
..+++.|++|+|||++++.+...
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~ 73 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARY 73 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHHHHHH
Confidence 57999999999999999998754
No 498
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.04 E-value=0.014 Score=43.89 Aligned_cols=22 Identities=32% Similarity=0.419 Sum_probs=19.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 029446 18 MRVVMLGLDAAGKTTILYKLHI 39 (193)
Q Consensus 18 ~~v~v~G~~~~GKssli~~l~~ 39 (193)
..|+|+|++|||||||...+..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998875
No 499
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=95.03 E-value=0.018 Score=42.88 Aligned_cols=23 Identities=26% Similarity=0.274 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q 029446 18 MRVVMLGLDAAGKTTILYKLHIG 40 (193)
Q Consensus 18 ~~v~v~G~~~~GKssli~~l~~~ 40 (193)
..+++.|++|+|||++++.+...
T Consensus 47 ~~~ll~G~~G~GKT~la~~l~~~ 69 (327)
T 1iqp_A 47 PHLLFAGPPGVGKTTAALALARE 69 (327)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 35999999999999999988764
No 500
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=95.02 E-value=0.38 Score=34.05 Aligned_cols=82 Identities=17% Similarity=0.109 Sum_probs=57.1
Q ss_pred CEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHH
Q 029446 60 NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEV 139 (193)
Q Consensus 60 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~ 139 (193)
.+.+.++|+|+.... .....+..+|.+++++..+ ..++..+...+..+... ......+-+|.|+.|.......+++
T Consensus 118 ~yD~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~-~~~~~~~~~~~~~l~~~-~~~~~~~~~v~N~~~~~~~~~~~~~ 193 (245)
T 3ea0_A 118 FYDYIIVDFGASIDH--VGVWVLEHLDELCIVTTPS-LQSLRRAGQLLKLCKEF-EKPISRIEIILNRADTNSRITSDEI 193 (245)
T ss_dssp HCSEEEEEEESSCCT--THHHHGGGCSEEEEEECSS-HHHHHHHHHHHHHHHTC-SSCCSCEEEEEESTTSCTTSCHHHH
T ss_pred hCCEEEEeCCCCCch--HHHHHHHHCCEEEEEecCc-HHHHHHHHHHHHHHHHh-CCCccceEEEEecCCCCCCCCHHHH
Confidence 467999999986533 3445567899999999886 55666666666665432 2234557799999997666556677
Q ss_pred HhhhCC
Q 029446 140 CEGLGL 145 (193)
Q Consensus 140 ~~~~~~ 145 (193)
.+.++.
T Consensus 194 ~~~~~~ 199 (245)
T 3ea0_A 194 EKVIGR 199 (245)
T ss_dssp HHHHTS
T ss_pred HHHhCC
Confidence 776664
Done!