BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029450
(193 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q58DM4|ALKB2_BOVIN Alpha-ketoglutarate-dependent dioxygenase alkB homolog 2 OS=Bos
taurus GN=ALKBH2 PE=2 SV=1
Length = 278
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 60/116 (51%), Gaps = 10/116 (8%)
Query: 69 IRVFGRSCLQVACISTPRDTCYVASEGVTQLIYSGYRPHPYSWDDFPPLKDILDIVLKVL 128
++VFG+ S PR G+T +SG P W P L+ + D V ++
Sbjct: 98 VQVFGK------WHSVPRKQATYGDTGLT-YTFSGLTLSPKPW--IPVLERVRDRV-SLV 147
Query: 129 PGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPSKS 184
G FN +L+NRYK G D++G H DDE+ IASVSFG RDF+ + K S+
Sbjct: 148 TGQTFNFVLINRYKDGQDHIGEHRDDERELALGSPIASVSFGACRDFVFRHKDSRG 203
>sp|Q6NS38|ALKB2_HUMAN Alpha-ketoglutarate-dependent dioxygenase alkB homolog 2 OS=Homo
sapiens GN=ALKBH2 PE=1 SV=1
Length = 261
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 59/116 (50%), Gaps = 10/116 (8%)
Query: 69 IRVFGRSCLQVACISTPRDTCYVASEGVTQLIYSGYRPHPYSWDDFPPLKDILDIVLKVL 128
++VFG+ S PR G+T +SG P W P L+ I D V V
Sbjct: 99 VQVFGK------WHSVPRKQATYGDAGLT-YTFSGLTLSPKPW--IPVLERIRDHVSGVT 149
Query: 129 PGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPSKS 184
G FN +L+NRYK G D++G H DDE+ IASVSFG RDF+ + K S+
Sbjct: 150 -GQTFNFVLINRYKDGCDHIGEHRDDERELAPGSPIASVSFGACRDFVFRHKDSRG 204
>sp|Q6P6J4|ALKB2_MOUSE Alpha-ketoglutarate-dependent dioxygenase alkB homolog 2 OS=Mus
musculus GN=Alkbh2 PE=1 SV=1
Length = 239
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 60/116 (51%), Gaps = 10/116 (8%)
Query: 69 IRVFGRSCLQVACISTPRDTCYVASEGVTQLIYSGYRPHPYSWDDFPPLKDILDIVLKVL 128
++VFG+ S PR G+T +SG P W P L+ + D V +V
Sbjct: 77 VQVFGK------WHSVPRKQATYGDAGLT-YTFSGLTLTPKPW--VPVLERVRDRVCEVT 127
Query: 129 PGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPSKS 184
G FN +L+NRYK G D++G H DDE+ IASVSFG RDF+ + K S+
Sbjct: 128 -GQTFNFVLVNRYKDGCDHIGEHRDDERELAPGSPIASVSFGACRDFIFRHKDSRG 182
>sp|Q32L00|ALKB3_BOVIN Alpha-ketoglutarate-dependent dioxygenase alkB homolog 3 OS=Bos
taurus GN=ALKBH3 PE=2 SV=1
Length = 286
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 68/149 (45%), Gaps = 19/149 (12%)
Query: 37 SEVIYFPRIIKMEDSWKFFDYLNNRIPWNRPTIRVFGRSCLQVACISTPRDTCYVASEGV 96
S V P + ++++ F+ L +PW + T PR T +
Sbjct: 88 SRVCLCPGFVDLKEADSVFEQLCRDVPWKQRT------GIRDDVTYQQPRLTAWYG---- 137
Query: 97 TQLIYSGYR----PHPYSWDDFPPLKDILDIVLKVLPGSRFNSLLLNRYKGGNDYVGWHA 152
+L Y+ R P+P+ + P+ +L ++ G FNSLL N Y+ D V WH+
Sbjct: 138 -ELPYTYSRITMEPNPH----WHPVLLMLKNQIEENTGHSFNSLLCNLYRNEKDSVDWHS 192
Query: 153 DDEKLYGSTPEIASVSFGCERDFLLKIKP 181
DDE G P IAS+SFG R F ++ KP
Sbjct: 193 DDEPSLGRCPIIASLSFGATRMFEMRKKP 221
>sp|Q5XIC8|ALKB3_RAT Alpha-ketoglutarate-dependent dioxygenase alkB homolog 3 OS=Rattus
norvegicus GN=Alkbh3 PE=2 SV=1
Length = 295
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 33/52 (63%)
Query: 130 GSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKP 181
G FNSLL N Y+ D V WH+DDE GS P IAS+SFG R F ++ KP
Sbjct: 170 GHTFNSLLCNFYRDEKDSVDWHSDDEPSLGSCPVIASLSFGATRTFEMRKKP 221
>sp|Q96Q83|ALKB3_HUMAN Alpha-ketoglutarate-dependent dioxygenase alkB homolog 3 OS=Homo
sapiens GN=ALKBH3 PE=1 SV=1
Length = 286
Score = 58.5 bits (140), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 68/149 (45%), Gaps = 19/149 (12%)
Query: 37 SEVIYFPRIIKMEDSWKFFDYLNNRIPWNRPTIRVFGRSCLQVACISTPRDTCYVASEGV 96
S V +P + ++++ + L +PW + T + PR T +
Sbjct: 88 SRVCLYPGFVDVKEADWILEQLCQDVPWKQRT------GIREDITYQQPRLTAWYG---- 137
Query: 97 TQLIYSGYR----PHPYSWDDFPPLKDILDIVLKVLPGSRFNSLLLNRYKGGNDYVGWHA 152
+L Y+ R P+P+ + P+ L ++ G FNSLL N Y+ D V WH+
Sbjct: 138 -ELPYTYSRITMEPNPH----WHPVLRTLKNRIEENTGHTFNSLLCNLYRNEKDSVDWHS 192
Query: 153 DDEKLYGSTPEIASVSFGCERDFLLKIKP 181
DDE G P IAS+SFG R F ++ KP
Sbjct: 193 DDEPSLGRCPIIASLSFGATRTFEMRKKP 221
>sp|Q8K1E6|ALKB3_MOUSE Alpha-ketoglutarate-dependent dioxygenase alkB homolog 3 OS=Mus
musculus GN=Alkbh3 PE=1 SV=1
Length = 286
Score = 57.0 bits (136), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 27/49 (55%), Positives = 32/49 (65%)
Query: 133 FNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKP 181
FNSLL N Y+ D V WH+DDE GS P IAS+SFG R F ++ KP
Sbjct: 173 FNSLLCNFYRDEKDSVDWHSDDEPSLGSCPVIASLSFGATRTFEMRKKP 221
>sp|Q91QZ3|RDRP_CLBVS RNA replication protein OS=Citrus leaf blotch virus (isolate Nagami
kumquat/France/SRA-153/1984) GN=ORF1 PE=3 SV=1
Length = 1962
Score = 38.1 bits (87), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 8/75 (10%)
Query: 106 PHPYSWDDFPPLKDILDIVLKVLPGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIA 165
PH SW P L++I+ I + G FN L+N Y+ N +G+H D+E++Y P +
Sbjct: 854 PHN-SW--VPSLEEIIQICGQ---GDDFNCALINFYEA-NSSLGFHRDNERVYNDDPILT 906
Query: 166 SVSFGCERDFLLKIK 180
+FG E F ++ K
Sbjct: 907 VCTFG-EGRFTIEFK 920
>sp|Q5UQK2|YR406_MIMIV Uncharacterized protein R406 OS=Acanthamoeba polyphaga mimivirus
GN=MIMI_R406 PE=4 SV=1
Length = 191
Score = 34.7 bits (78), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 114 FPPLKDILDIVLKVLPGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCER 173
F P +L ++ + G F+S L+ Y G D +G+H D + G IA V+FG R
Sbjct: 69 FTPTVHMLKKKIEEIIGVEFDSALIFHYIDGKDSMGYHYDTIGV-GRGNHIAGVTFGSSR 127
>sp|B1PS76|RDRP_LOLV RNA-directed RNA polymerase OS=Lolium latent virus (isolate
Lolium/USA/US1/-) GN=ORF1 PE=3 SV=1
Length = 1729
Score = 33.1 bits (74), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Query: 104 YRPHPYSWDDFPPLKDILDIVLKVLPGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPE 163
Y H + + P+ D L + L + ++ L+ RY+ + VG HADDE+ Y
Sbjct: 715 YGRHEHRSQSWLPVIDSLQVALGL--DESYDHCLIQRYRK-HARVGLHADDEECYEPDST 771
Query: 164 IASVSFGCERDFLLKIKPSKS 184
I +++ DFL++ K+
Sbjct: 772 IVTLNLYGNADFLIERNTDKA 792
>sp|B3N4V1|TOTM_DROER Protein Turandot M OS=Drosophila erecta GN=TotM PE=3 SV=1
Length = 131
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 12 AKANPDDDDEKNQKKQRMVVDLGNGSEVIYFPRIIKMEDSWKFFDYLNNRIPWN 65
K N +DDDE +KQR++ G+ S V R ++D KF+D + +PW
Sbjct: 19 GKVNAEDDDEFRTEKQRLLRVYGDSS-VDEATRYRNVDDLVKFYDKYSTLLPWK 71
>sp|A0AUJ5|POLG_BVY3 Genome polyprotein OS=Blackberry virus Y (isolate Blackberry
plant/USA: Arkansas/C3ARK/2005) PE=3 SV=1
Length = 3491
Score = 32.7 bits (73), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Query: 104 YRPHPYSWDDFPPLKDILDIVLKVLPGSRFNSLLLNRYKGGNDYVGWHADDEKLYGST 161
Y HP +D P D LD K L G+++N+ L+ Y G D + +H DDE Y T
Sbjct: 159 YGHHPIYYDTHP-WNDELD---KYLGGAKYNTALVQVYDGTRD-LPYHKDDEPCYDIT 211
>sp|C5DDZ2|M28P1_LACTC Probable zinc metalloprotease KLTH0C04972g OS=Lachancea
thermotolerans (strain ATCC 56472 / CBS 6340 / NRRL
Y-8284) GN=KLTH0C04972g PE=3 SV=1
Length = 962
Score = 32.0 bits (71), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 46/120 (38%), Gaps = 15/120 (12%)
Query: 29 MVVDLGNGSEVIY-FPRIIKMEDS---WKFFDYLNNRIPWNRPTIRVFGRSCLQVACI-- 82
MV+ S I+ F R E S +F LN T+ VFGR + I
Sbjct: 668 MVLLFAAASAGIFSFERAPFTESSPLKLRFSQELNLHDELGFSTVNVFGRQGAGIEQILR 727
Query: 83 -------STPRDTCYVASEGVTQLIYSGYRPHPYSWDDFPPLKDILDIVLKVLPGSRFNS 135
+ C +G Y+G RPH S P L DIL I KVL +R +S
Sbjct: 728 NIPSTQNAHSNVECTSNGQGSETCRYAGPRPHLVSSSSIPELSDILSI--KVLSNNRKSS 785
>sp|Q9Z3R5|AGLE_RHIME Alpha-glucosides-binding periplasmic protein AglE OS=Rhizobium
meliloti (strain 1021) GN=aglE PE=3 SV=2
Length = 458
Score = 31.2 bits (69), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 14/78 (17%)
Query: 125 LKVLPG--SRFNSLLLNRYKGGNDYVG--------WHADDEKLYGSTPEIASVSFGCERD 174
LK PG SRFN L +K G+D G W +DE L+ S + G E
Sbjct: 30 LKFKPGEDSRFNWASLEEFKKGHDLKGQTLTIFGPWRGEDEALFKSVYAYFVEATGVE-- 87
Query: 175 FLLKIKPSKSYQEELMMN 192
LK S++Y+++++++
Sbjct: 88 --LKYSSSENYEQQIVID 103
>sp|O71188|R1A_GLRV3 Replicase protein 1a OS=Grapevine leafroll-associated virus 3
(isolate United States/NY1) GN=1a PE=3 SV=2
Length = 2233
Score = 30.4 bits (67), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 122 DIVLKVLPGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIK 180
DI+ + S F+ L+ +YK G V +HADDE+ Y S I +V+ + +F K +
Sbjct: 1591 DILTAIKYPSVFDHCLVQKYKMGGG-VPFHADDEECYPSDNPILTVNLVGKANFSTKCR 1648
>sp|O71189|R1AB_GLRV3 Replicase polyprotein 1ab OS=Grapevine leafroll-associated virus 3
(isolate United States/NY1) GN=1a-1b PE=3 SV=3
Length = 2772
Score = 30.4 bits (67), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 122 DIVLKVLPGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIK 180
DI+ + S F+ L+ +YK G V +HADDE+ Y S I +V+ + +F K +
Sbjct: 1591 DILTAIKYPSVFDHCLVQKYKMGGG-VPFHADDEECYPSDNPILTVNLVGKANFSTKCR 1648
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.139 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,498,217
Number of Sequences: 539616
Number of extensions: 3522496
Number of successful extensions: 8127
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 8117
Number of HSP's gapped (non-prelim): 20
length of query: 193
length of database: 191,569,459
effective HSP length: 111
effective length of query: 82
effective length of database: 131,672,083
effective search space: 10797110806
effective search space used: 10797110806
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)