Query 029450
Match_columns 193
No_of_seqs 167 out of 1091
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 13:07:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029450.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029450hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00568 alkb DNA alkylation 100.0 4.1E-29 9E-34 201.1 14.7 138 43-192 2-151 (169)
2 PRK15401 alpha-ketoglutarate-d 100.0 3.5E-28 7.7E-33 201.7 16.2 145 31-192 14-172 (213)
3 PF13532 2OG-FeII_Oxy_2: 2OG-F 99.9 8.7E-24 1.9E-28 171.0 12.8 142 39-191 2-152 (194)
4 COG3145 AlkB Alkylated DNA rep 99.9 1.6E-22 3.5E-27 165.4 13.5 146 30-191 10-161 (194)
5 KOG3200 Uncharacterized conser 98.9 5.5E-09 1.2E-13 84.3 8.8 114 38-179 13-129 (224)
6 PF12933 FTO_NTD: FTO catalyti 97.8 5.8E-05 1.3E-09 63.9 7.3 117 45-170 22-189 (253)
7 KOG4176 Uncharacterized conser 97.2 0.0015 3.3E-08 57.7 8.4 65 116-184 191-256 (323)
8 KOG2731 DNA alkylation damage 88.5 0.63 1.4E-05 41.8 4.1 56 133-190 216-271 (378)
9 KOG3959 2-Oxoglutarate- and ir 86.0 1.1 2.3E-05 38.4 4.0 114 29-168 67-185 (306)
10 PRK05467 Fe(II)-dependent oxyg 82.9 13 0.00028 31.4 9.2 29 39-68 2-30 (226)
11 smart00702 P4Hc Prolyl 4-hydro 71.7 46 0.001 26.0 10.3 24 38-61 2-25 (178)
12 PF03171 2OG-FeII_Oxy: 2OG-Fe( 68.5 4.8 0.00011 28.3 2.5 40 134-180 2-45 (98)
13 PLN00052 prolyl 4-hydroxylase; 65.6 97 0.0021 27.4 10.9 32 29-60 46-77 (310)
14 KOG2731 DNA alkylation damage 58.6 4.2 9.1E-05 36.7 0.7 53 132-186 313-368 (378)
15 PF13640 2OG-FeII_Oxy_3: 2OG-F 34.6 20 0.00044 25.1 1.0 19 136-155 1-19 (100)
16 PF13661 2OG-FeII_Oxy_4: 2OG-F 28.1 80 0.0017 21.1 3.1 21 136-157 13-33 (70)
17 TIGR01762 chlorin-enz chlorina 27.8 1.4E+02 0.003 25.8 5.3 23 39-61 16-38 (288)
18 KOG4417 Predicted endonuclease 23.5 83 0.0018 26.7 2.9 41 38-78 84-128 (261)
19 PF12088 DUF3565: Protein of u 23.4 58 0.0012 22.0 1.6 27 148-181 1-27 (61)
20 PF09859 Oxygenase-NA: Oxygena 22.7 97 0.0021 25.2 3.0 54 110-168 42-96 (173)
21 cd06397 PB1_UP1 Uncharacterize 22.6 1.1E+02 0.0024 21.8 3.0 60 115-177 20-79 (82)
No 1
>TIGR00568 alkb DNA alkylation damage repair protein AlkB. Proteins in this family have an as of yet undetermined function in the repair of alkylation damage to DNA. Alignment and family designation based on phylogenomic analysis of Jonathan A. Eisen (PhD Thesis, Stanford University, 1999).
Probab=99.96 E-value=4.1e-29 Score=201.06 Aligned_cols=138 Identities=20% Similarity=0.306 Sum_probs=114.7
Q ss_pred CCCCCHHHHHHHHHHHHh---cCCCCCceEeecCcEEEeeeeecCCeeeE----EEcCCCCcceeccCCCC-CCCCCCCC
Q 029450 43 PRIIKMEDSWKFFDYLNN---RIPWNRPTIRVFGRSCLQVACISTPRDTC----YVASEGVTQLIYSGYRP-HPYSWDDF 114 (193)
Q Consensus 43 ~~fl~~~~a~~l~~~L~~---~~~w~~~~~~~~Gk~~~~~~~~~~pR~~~----wy~~~~~~~Y~Ysg~~~-~~~~w~~~ 114 (193)
.+++...++..|.+++++ +.+|++ .++++||++.+ ||+++ |+++ +. .|.|++..+ ...+||++
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~~w~~-~~~~~gk~~~~------pr~~~~~l~W~~~-g~-~Y~ys~~~~~~~~~~p~~ 72 (169)
T TIGR00568 2 KRYFAFNAQEQLIRDINDVASQDPFRQ-YVTPGGYTMSV------AMTNLGKLGWTTH-GQ-GYLYSPKDPQTNKPWPAM 72 (169)
T ss_pred CCccChHHHHHHHHHHHHHhhcCCCcC-eEecCCeEeee------hhhhcccceEEcC-CC-cccCCCcccCCCCCCCCC
Confidence 568888888889988876 468999 48999999999 99986 9999 56 599999876 45667655
Q ss_pred c-hHHHHHHHHHhhcCCC---CCceEEEeeecCCCCCceecccCCCCcCCCCcEEEEEcCCeeeeEEeecCCCCceeEEe
Q 029450 115 P-PLKDILDIVLKVLPGS---RFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPSKSYQEELM 190 (193)
Q Consensus 115 P-~L~~l~~~~~e~~~g~---~fn~~LvN~Y~dG~d~ig~HsD~e~~lg~~~~IaSlSLGa~R~F~~r~~~~~~~~~~~~ 190 (193)
| .|..+.+++ ++.+|. .||+||||+|++| ++||||+|+ .+++.+++|||||||++|.|.|+++..+.+..++.
T Consensus 73 P~~L~~L~~~v-~~~~g~~~~~~n~~LvN~Y~~G-d~mg~H~D~-~e~~~~~pI~SvSLG~~r~F~~~~~~~~~~~~~l~ 149 (169)
T TIGR00568 73 PQDLGDLCERV-ATAAGFPDFQPDACLVNRYAPG-ATLSLHQDR-DEPDLRAPLLSVSLGLPAIFLIGGLKRNDPPKRLR 149 (169)
T ss_pred CHHHHHHHHHH-HHHhCCCCCCCCEEEEEeecCC-Ccccccccc-ccccCCCCEEEEeCCCCEEEEecCCcCCCceEEEE
Confidence 5 577776654 445664 8999999999998 999999994 67788999999999999999999988777777777
Q ss_pred cc
Q 029450 191 MN 192 (193)
Q Consensus 191 l~ 192 (193)
|.
T Consensus 150 L~ 151 (169)
T TIGR00568 150 LH 151 (169)
T ss_pred eC
Confidence 63
No 2
>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional
Probab=99.96 E-value=3.5e-28 Score=201.72 Aligned_cols=145 Identities=17% Similarity=0.254 Sum_probs=118.7
Q ss_pred EeCCCCceEEEeCCCCCHHHHHHHHHHHHh---cCCCCCceEeecCcEEEeeeeecCCeee-----EEEcCCCCcceecc
Q 029450 31 VDLGNGSEVIYFPRIIKMEDSWKFFDYLNN---RIPWNRPTIRVFGRSCLQVACISTPRDT-----CYVASEGVTQLIYS 102 (193)
Q Consensus 31 ~~l~~g~~v~~~~~fl~~~~a~~l~~~L~~---~~~w~~~~~~~~Gk~~~~~~~~~~pR~~-----~wy~~~~~~~Y~Ys 102 (193)
..|.+| +.++++|. .+++++|++.|++ +++|++. .++|+..++ +|++ +||++.. .|+|+
T Consensus 14 ~~~~~g--~~~~~~~~-~~~~~~l~~~~~~~~~~~p~~~~--~~~gg~~ms------v~mt~~G~~~W~~d~~--~YrYs 80 (213)
T PRK15401 14 EPLAPG--AVLLRGFA-LAAAEALLAAIEAVAAQAPFRHM--VTPGGYTMS------VAMTNCGALGWVTDRR--GYRYS 80 (213)
T ss_pred eecCCC--cEEeCCCC-HHHHHHHHHHHHHHHhcCCccce--ecCCCCcce------eEEeccccceEecCCC--CcccC
Confidence 447666 88999995 8899999999998 8999884 467877888 8999 9999985 59999
Q ss_pred CCC-CCCCCCCCCch-HHHHHHHHHhhcCC---CCCceEEEeeecCCCCCceecccC-CCCcCCCCcEEEEEcCCeeeeE
Q 029450 103 GYR-PHPYSWDDFPP-LKDILDIVLKVLPG---SRFNSLLLNRYKGGNDYVGWHADD-EKLYGSTPEIASVSFGCERDFL 176 (193)
Q Consensus 103 g~~-~~~~~w~~~P~-L~~l~~~~~e~~~g---~~fn~~LvN~Y~dG~d~ig~HsD~-e~~lg~~~~IaSlSLGa~R~F~ 176 (193)
+.. ..+.+||++|. |.++.+++ +...+ ..||+||||+|++|+ +||||+|+ |.. .+++|||||||++|.|+
T Consensus 81 ~~~~~~~~pwp~~P~~l~~L~~~~-~~~~~~~~~~p~a~LvN~Y~~G~-~mg~H~D~~E~~--~~~pI~SvSLG~~~~F~ 156 (213)
T PRK15401 81 PIDPLTGKPWPAMPASFLALAQRA-AAAAGFPGFQPDACLINRYAPGA-KLSLHQDKDERD--FRAPIVSVSLGLPAVFQ 156 (213)
T ss_pred CcCCCCCCCCCCchHHHHHHHHHH-HHHcCCCCCCCCEEEEEeccCcC-ccccccCCCccc--CCCCEEEEeCCCCeEEE
Confidence 986 57899998775 67766654 33344 489999999999985 99999996 443 56899999999999999
Q ss_pred EeecCCCCceeEEecc
Q 029450 177 LKIKPSKSYQEELMMN 192 (193)
Q Consensus 177 ~r~~~~~~~~~~~~l~ 192 (193)
|++...+....++.|.
T Consensus 157 ~~~~~~~~~~~~l~L~ 172 (213)
T PRK15401 157 FGGLKRSDPLQRILLE 172 (213)
T ss_pred ecccCCCCceEEEEeC
Confidence 9987777777777764
No 3
>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A ....
Probab=99.91 E-value=8.7e-24 Score=171.00 Aligned_cols=142 Identities=31% Similarity=0.563 Sum_probs=101.6
Q ss_pred EEEeCCCCCHHHHHHHHHHHHhcCCCCCceEeecCcEEEeeeeecCCee----eEEEcCCCCcceeccCC-CCCCCCCCC
Q 029450 39 VIYFPRIIKMEDSWKFFDYLNNRIPWNRPTIRVFGRSCLQVACISTPRD----TCYVASEGVTQLIYSGY-RPHPYSWDD 113 (193)
Q Consensus 39 v~~~~~fl~~~~a~~l~~~L~~~~~w~~~~~~~~Gk~~~~~~~~~~pR~----~~wy~~~~~~~Y~Ysg~-~~~~~~w~~ 113 (193)
+.|+++||+.+++.+|++.|.+..+|.+.++.. ++.+.. +|. ..|++... .|.|++. .....+|++
T Consensus 2 ~~~~~~fls~~e~~~l~~~l~~~~~~~~~~~~~-~~~~~~------~~~~~~~~~~~~~~~--~y~y~~~~~~~~~~~~~ 72 (194)
T PF13532_consen 2 LYYIPNFLSEEEAAELLNELRESAPFRQPTYPM-GKVYSL------PRKLCGGLSWVGDGP--SYRYSGKRPVRSKPWPP 72 (194)
T ss_dssp EEEETTSS-HHHHHHHHHHHHHHS--B-GCCCC-CCECCE------CCE-SSEEEEEECT----CCCTCC-EECCCEBSC
T ss_pred EEEECCCCCHHHHHHHHHHHHhhCCCcCCeEcC-CCEEcc------ceecceeeEEECCCC--CeEcCCccccCCCCCCC
Confidence 889999999999999999999999998887665 776655 544 57887653 5999987 556677776
Q ss_pred Cch-HHHHHHHHHhhc---CCCCCceEEEeeecCCCCCceecccCCCCcCCCCcEEEEEcCCeeeeEEeecCCCCceeEE
Q 029450 114 FPP-LKDILDIVLKVL---PGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPSKSYQEEL 189 (193)
Q Consensus 114 ~P~-L~~l~~~~~e~~---~g~~fn~~LvN~Y~dG~d~ig~HsD~e~~lg~~~~IaSlSLGa~R~F~~r~~~~~~~~~~~ 189 (193)
+|. |.++++++.+.. .++.||+||||+|++|+ +|++|+|++ .++.+++|||||||++|.|.|+++........+
T Consensus 73 ~p~~l~~~~~~~~~~~~~~~~~~~n~~liN~Y~~g~-~i~~H~D~~-~~~~~~~I~slSLG~~~~~~f~~~~~~~~~~~~ 150 (194)
T PF13532_consen 73 FPEWLSRLLERLVEATGIPPGWRPNQCLINYYRDGS-GIGPHSDDE-EYGFGPPIASLSLGSSRVFRFRNKSDDDEPIEV 150 (194)
T ss_dssp CHHHHHHHHHHHHHHHT-SHSS--SEEEEEEESSTT--EEEE---T-TC-CCSEEEEEEEES-EEEEEEECGGTS-EEEE
T ss_pred ccHHHHHHHHHHHHHhccccCCCCCEEEEEecCCCC-CcCCCCCcc-cccCCCcEEEEEEccCceEEEeeccCCCccEEE
Confidence 664 677767664422 36889999999999986 999999999 447889999999999999999988766666666
Q ss_pred ec
Q 029450 190 MM 191 (193)
Q Consensus 190 ~l 191 (193)
.|
T Consensus 151 ~L 152 (194)
T PF13532_consen 151 PL 152 (194)
T ss_dssp EE
T ss_pred Ec
Confidence 55
No 4
>COG3145 AlkB Alkylated DNA repair protein [DNA replication, recombination, and repair]
Probab=99.89 E-value=1.6e-22 Score=165.41 Aligned_cols=146 Identities=25% Similarity=0.430 Sum_probs=109.2
Q ss_pred EEeCCCCceEEEeCCCC--CHHHHHHHHHHHHhcCCCCCceEeecCcEEEeeeeecCCeeeEEEcCCCCcceeccCCCCC
Q 029450 30 VVDLGNGSEVIYFPRII--KMEDSWKFFDYLNNRIPWNRPTIRVFGRSCLQVACISTPRDTCYVASEGVTQLIYSGYRPH 107 (193)
Q Consensus 30 ~~~l~~g~~v~~~~~fl--~~~~a~~l~~~L~~~~~w~~~~~~~~Gk~~~~~~~~~~pR~~~wy~~~~~~~Y~Ysg~~~~ 107 (193)
...+++| +.+.++|+ .+.+..+.+..+..+.||.+..++++||.+.+ +|..+|+++ .. .|.|++....
T Consensus 10 ~~~~~~G--~~~~~~~~~~~~~~l~~~l~~~~~~~P~~~~~~~~~g~~~sV------~r~~~W~~d-~~-gy~y~~~~p~ 79 (194)
T COG3145 10 RRQLAPG--AVILPGFLLLTQGALVAALLFLLSQAPWFRPRRTPYGKPMSV------PRLLGWVTD-RR-GYRYSLRSPL 79 (194)
T ss_pred cccCCCC--eEEEecccccchHHHHHHHHHhcccCcccceeecCCCcEeee------eeccceecc-cc-cccccccccC
Confidence 3446666 56666665 33333345556667899999999999999999 999999999 44 5999998765
Q ss_pred C-CCCCCCchHHHHHHHHHhhcCCCCCce---EEEeeecCCCCCceecccCCCCcCCCCcEEEEEcCCeeeeEEeecCCC
Q 029450 108 P-YSWDDFPPLKDILDIVLKVLPGSRFNS---LLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPSK 183 (193)
Q Consensus 108 ~-~~w~~~P~L~~l~~~~~e~~~g~~fn~---~LvN~Y~dG~d~ig~HsD~e~~lg~~~~IaSlSLGa~R~F~~r~~~~~ 183 (193)
+ .+||..|.+. ..+.. ..|..++. ||+|+|++| |+||||+|.+..... ++|||||||++|.|+|+++...
T Consensus 80 ~~~p~p~l~~~~---~~~~~-~~g~~~~~~ea~Lvn~Y~pG-d~ig~HqD~~e~~~~-~~v~slSLg~~~~F~~~~~~r~ 153 (194)
T COG3145 80 TGKPWPPLLALF---HDLFG-AAGYPFEGPEAVLVNRYRPG-ASIGWHQDKDEEDDR-PPVASLSLGAPCIFRLRGRRRR 153 (194)
T ss_pred CCCCCCccHHHH---HHHHH-HhcCCCCChhheeEEeccCC-CccccccccccccCC-CceEEEecCCCeEEEeccccCC
Confidence 4 5675333332 22222 35655555 999999998 999999999887655 8999999999999999998877
Q ss_pred CceeEEec
Q 029450 184 SYQEELMM 191 (193)
Q Consensus 184 ~~~~~~~l 191 (193)
....++.|
T Consensus 154 ~~~~~~~L 161 (194)
T COG3145 154 GPGLRLRL 161 (194)
T ss_pred CCceeEEe
Confidence 77777765
No 5
>KOG3200 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.93 E-value=5.5e-09 Score=84.31 Aligned_cols=114 Identities=23% Similarity=0.299 Sum_probs=84.9
Q ss_pred eEEEeCCCCCHHHHHHHHHHHHhc--CCCCCceEeecCcEEEeeeeecCCeeeEEEcCCCCcceeccCCCCCCCCCCCCc
Q 029450 38 EVIYFPRIIKMEDSWKFFDYLNNR--IPWNRPTIRVFGRSCLQVACISTPRDTCYVASEGVTQLIYSGYRPHPYSWDDFP 115 (193)
Q Consensus 38 ~v~~~~~fl~~~~a~~l~~~L~~~--~~w~~~~~~~~Gk~~~~~~~~~~pR~~~wy~~~~~~~Y~Ysg~~~~~~~w~~~P 115 (193)
.+.|+|+|++.+|...++.++... -.|++- .|.|++.|-|-.+. .| +-|...| |
T Consensus 13 t~~YIPnfIt~EEe~~~lshIe~ap~pkW~~L---------------~NRRLqNyGGvvh~-----~g--lipeelP--~ 68 (224)
T KOG3200|consen 13 TMIYIPNFITEEEENLYLSHIENAPQPKWRVL---------------ANRRLQNYGGVVHK-----TG--LIPEELP--P 68 (224)
T ss_pred eEEEcCCccChHHHHHHHHHHhcCCCchhHHH---------------HhhhhhhcCCcccc-----CC--cCccccC--H
Confidence 689999999999999888888643 225332 23677766543221 13 2345566 6
Q ss_pred hHHHHHHHHHh-hcCCCCCceEEEeeecCCCCCceecccCCCCcCCCCcEEEEEcCCeeeeEEee
Q 029450 116 PLKDILDIVLK-VLPGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKI 179 (193)
Q Consensus 116 ~L~~l~~~~~e-~~~g~~fn~~LvN~Y~dG~d~ig~HsD~e~~lg~~~~IaSlSLGa~R~F~~r~ 179 (193)
||..+.++++. ...+...|+||||.|..| .+|.-|.|.... .|+|+++|||+...+.|-.
T Consensus 69 wLq~~v~kinnlglF~s~~NHVLVNeY~pg-qGImPHtDGPaf---~piVstiSlGsh~vldf~~ 129 (224)
T KOG3200|consen 69 WLQYYVDKINNLGLFKSPANHVLVNEYLPG-QGIMPHTDGPAF---HPIVSTISLGSHTVLDFYD 129 (224)
T ss_pred HHHHHHHHhhcccccCCCcceeEeecccCC-CCcCcCCCCCcc---cceEEEEecCCceEEeccc
Confidence 89998887753 134468999999999996 699999999886 6899999999999999854
No 6
>PF12933 FTO_NTD: FTO catalytic domain; InterPro: IPR024367 Alpha-ketoglutarate-dependent dioxygenase FTO, also known as Fat mass and obesity-associated protein, is a nucleus protein which belongs to the FTO family. This enzyme is a dioxygenase that repairs alkylated DNA and RNA by oxidative demethylation []. FTO activity is highest towards single-stranded RNA containing 3-methyluracil, followed by single-stranded DNA containing 3-methylthymine. FTO has low demethylase activity towards single-stranded DNA containing 1-methyladenine or 3-methylcytosine []. FTO has no activity towards 1-methylguanine. It has no detectable activity towards double-stranded DNA. FTO requires molecular oxygen, alpha-ketoglutarate and iron. FTO contributes to the regulation of the global metabolic rate, energy expenditure and energy homeostasis. It contributes to the regulation of body size and body fat accumulation as well []. This domain is the catalytic AlkB-like domain from the FTO protein []. This domain catalyses a demethylase activity with a preference for 3-methylthymidine.; PDB: 3LFM_A.
Probab=97.84 E-value=5.8e-05 Score=63.88 Aligned_cols=117 Identities=22% Similarity=0.359 Sum_probs=61.4
Q ss_pred CCCHH---HHHHHHHHHHhcCCCCCceEeecCcEEEeeeeecCCeeeEEEcCCCCcceeccCCCCCCCCCCCC-------
Q 029450 45 IIKME---DSWKFFDYLNNRIPWNRPTIRVFGRSCLQVACISTPRDTCYVASEGVTQLIYSGYRPHPYSWDDF------- 114 (193)
Q Consensus 45 fl~~~---~a~~l~~~L~~~~~w~~~~~~~~Gk~~~~~~~~~~pR~~~wy~~~~~~~Y~Ysg~~~~~~~w~~~------- 114 (193)
-||.+ +..+-|..|++.=-|.++.+++-||.... +=.-...|++|. .|+|-+..+=+.||+.-
T Consensus 22 ~lP~~lH~~vq~Af~tL~~~Gcf~~Dlvr~~~k~~~T------~VsR~L~G~pG~-TYkYl~~RLFa~PW~~~~~~~~~~ 94 (253)
T PF12933_consen 22 SLPEELHEEVQEAFDTLRKHGCFFRDLVRIGGKDSFT------PVSRTLLGEPGC-TYKYLNTRLFAVPWPDEGSEIKYQ 94 (253)
T ss_dssp GS-HHHHHHHHHHHHHHHHTT--B--EE-GGG--EE-------SSEEEEEESTTB-EEEETTEEEE-EE-----------
T ss_pred cCCHHHHHHHHHHHHHHHhcCchHHHHHhhCCccccc------eeehhhcCCCCc-eeEecceeEEeccCCCCCcccccC
Confidence 34544 45667888888778999999998886544 555578999999 59999988778899741
Q ss_pred -chHHHHHHHH---Hh-----------h----------cCCCCCceEEEeeecC----------------CCCCceeccc
Q 029450 115 -PPLKDILDIV---LK-----------V----------LPGSRFNSLLLNRYKG----------------GNDYVGWHAD 153 (193)
Q Consensus 115 -P~L~~l~~~~---~e-----------~----------~~g~~fn~~LvN~Y~d----------------G~d~ig~HsD 153 (193)
|.+...++.+ ++ + .....||.+|||+++. |.-+||||+|
T Consensus 95 ~~~i~~a~~al~~LN~~L~~~~~~~l~~~~~~~~~~~~~~~~~fNvTLlN~MdP~~~~~~~LK~Ep~fgmGKmaVsWH~D 174 (253)
T PF12933_consen 95 SPEIRSACKALGKLNDYLCSRAVQALEGRRLARVEEDEVGSCEFNVTLLNYMDPSSQAMPDLKEEPYFGMGKMAVSWHHD 174 (253)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------EEEEEEE-S--S-SSS--B-SSS---BEEEEEE--
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCcccceeeehhhhhccCcccccccccccccccCCcceeeeeccc
Confidence 2222221111 10 0 0123699999999997 5668999999
Q ss_pred CCCCcCCCCcEEEEEcC
Q 029450 154 DEKLYGSTPEIASVSFG 170 (193)
Q Consensus 154 ~e~~lg~~~~IaSlSLG 170 (193)
... ...++||..|.-
T Consensus 175 enL--~~~StVAVY~~s 189 (253)
T PF12933_consen 175 ENL--VERSTVAVYSYS 189 (253)
T ss_dssp -SB---TT--EEEEEEE
T ss_pred ccc--ccccceEEEEec
Confidence 764 478899988753
No 7
>KOG4176 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.24 E-value=0.0015 Score=57.74 Aligned_cols=65 Identities=23% Similarity=0.244 Sum_probs=47.9
Q ss_pred hHHHHHHHHHhh-cCCCCCceEEEeeecCCCCCceecccCCCCcCCCCcEEEEEcCCeeeeEEeecCCCC
Q 029450 116 PLKDILDIVLKV-LPGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPSKS 184 (193)
Q Consensus 116 ~L~~l~~~~~e~-~~g~~fn~~LvN~Y~dG~d~ig~HsD~e~~lg~~~~IaSlSLGa~R~F~~r~~~~~~ 184 (193)
.+..++++++.. .+...+|+|.||.|..| ++|--|-|-.. | ..+|+||||=.++++.|++.-...
T Consensus 191 ~~~~ii~rlv~~~~ip~~pd~~~iN~Ye~G-~~i~ph~~~~~-F--~~Pi~slS~lSe~~m~Fg~~~~~~ 256 (323)
T KOG4176|consen 191 LFKSIIDRLVSWRVIPERPDQCTINFYEPG-DGIPPHIDHSA-F--LDPISSLSFLSECTMEFGHGLLSD 256 (323)
T ss_pred HHHHHHHHhhhhccCCCCCCeeEEEeeCCC-CCCCCCCChHH-h--cCceEEEEeecceeEEeccccccc
Confidence 456666655442 22336999999999996 79999995544 3 347999999999999999865443
No 8
>KOG2731 consensus DNA alkylation damage repair protein [RNA processing and modification]
Probab=88.46 E-value=0.63 Score=41.79 Aligned_cols=56 Identities=20% Similarity=0.144 Sum_probs=42.2
Q ss_pred CceEEEeeecCCCCCceecccCCCCcCCCCcEEEEEcCCeeeeEEeecCCCCceeEEe
Q 029450 133 FNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPSKSYQEELM 190 (193)
Q Consensus 133 fn~~LvN~Y~dG~d~ig~HsD~e~~lg~~~~IaSlSLGa~R~F~~r~~~~~~~~~~~~ 190 (193)
....|+|||.- ++.++.|-|. .+++...++.+.|||.++.|.+.-....+...-++
T Consensus 216 ~~Gli~nYlsi-~~tl~ih~d~-reld~~~pf~s~s~g~~ai~lLg~m~l~e~p~p~~ 271 (378)
T KOG2731|consen 216 RPGLIKNYLSI-DDTLGIHLDC-RELDLSKPFYSPSLGQGAILLLGMMCLGENPDPMT 271 (378)
T ss_pred cCcceeeeccc-CcEEEEEeeh-hhcccCCccccccccccceeeecccccCCCCCccc
Confidence 34579999999 5899999986 22355566999999999999997766555444333
No 9
>KOG3959 consensus 2-Oxoglutarate- and iron-dependent dioxygenase-related proteins [General function prediction only]
Probab=86.04 E-value=1.1 Score=38.43 Aligned_cols=114 Identities=15% Similarity=0.318 Sum_probs=66.5
Q ss_pred EEEeCCCCceEEEeCCCCCHHHHHHHHHHHHhcCCCCCceEeecCcEEEeeeeecCCeeeEEEcCCCCcceeccCCCCCC
Q 029450 29 MVVDLGNGSEVIYFPRIIKMEDSWKFFDYLNNRIPWNRPTIRVFGRSCLQVACISTPRDTCYVASEGVTQLIYSGYRPHP 108 (193)
Q Consensus 29 ~~~~l~~g~~v~~~~~fl~~~~a~~l~~~L~~~~~w~~~~~~~~Gk~~~~~~~~~~pR~~~wy~~~~~~~Y~Ysg~~~~~ 108 (193)
.-+.++ .+.++.+||+.+|...|+..| +.+||.+-+ -|+ |.+ =||.. -.+.......
T Consensus 67 ~~~p~p---G~~lie~Fls~~Eea~l~~~~-D~~pW~~SQ---SGR-----------RKQ-dyGPK----vNFkk~Klkt 123 (306)
T KOG3959|consen 67 GSIPIP---GLTLIENFLSESEEAKLLNMI-DTVPWAQSQ---SGR-----------RKQ-DYGPK----VNFKKKKLKT 123 (306)
T ss_pred CccccC---CeeehhhhhccchHhHHHHHh-ccCchhhhc---ccc-----------ccc-ccCCc----cchhhhhhcc
Confidence 345553 399999999999998888776 789997664 132 222 24321 1122222222
Q ss_pred CCCCCCchHHH-HHHHHHhhcC---C-CCCceEEEeeecCCCCCceecccCCCCcCCCCcEEEEE
Q 029450 109 YSWDDFPPLKD-ILDIVLKVLP---G-SRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVS 168 (193)
Q Consensus 109 ~~w~~~P~L~~-l~~~~~e~~~---g-~~fn~~LvN~Y~dG~d~ig~HsD~e~~lg~~~~IaSlS 168 (193)
..|--+|...+ +++++ +... | .+|..|=+.|=..-++.|..|.||-=..|.. ++++.
T Consensus 124 ~~F~G~P~~~~~v~rrm-~~yp~l~gfqp~EqCnLeYep~kgsaIdpH~DD~WiWGeR--lv~~n 185 (306)
T KOG3959|consen 124 DTFVGMPEYADMVLRRM-SEYPVLKGFQPFEQCNLEYEPVKGSAIDPHQDDMWIWGER--LVRSN 185 (306)
T ss_pred CcccCCchHHHHHHHHh-hccchhhccCcHHHcCcccccccCCccCccccchhhhhhh--eeehh
Confidence 22333344433 33333 2222 2 4577887777666678999999997665543 44544
No 10
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional
Probab=82.92 E-value=13 Score=31.39 Aligned_cols=29 Identities=14% Similarity=0.375 Sum_probs=23.1
Q ss_pred EEEeCCCCCHHHHHHHHHHHHhcCCCCCce
Q 029450 39 VIYFPRIIKMEDSWKFFDYLNNRIPWNRPT 68 (193)
Q Consensus 39 v~~~~~fl~~~~a~~l~~~L~~~~~w~~~~ 68 (193)
+..+|++|+++|+..+.+.|.+ ..|....
T Consensus 2 i~~I~~vLs~eec~~~~~~le~-~~~~dg~ 30 (226)
T PRK05467 2 LLHIPDVLSPEEVAQIRELLDA-AEWVDGR 30 (226)
T ss_pred eeeecccCCHHHHHHHHHHHHh-cCCccCC
Confidence 4678999999999999988844 6786443
No 11
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues. Mammalian enzymes catalyse hydroxylation of collagen, for example. Prokaryotic enzymes might catalyse hydroxylation of antibiotic peptides. These are 2-oxoglutarate-dependent dioxygenases, requiring 2-oxoglutarate and dioxygen as cosubstrates and ferrous iron as a cofactor.
Probab=71.73 E-value=46 Score=25.99 Aligned_cols=24 Identities=13% Similarity=0.218 Sum_probs=20.2
Q ss_pred eEEEeCCCCCHHHHHHHHHHHHhc
Q 029450 38 EVIYFPRIIKMEDSWKFFDYLNNR 61 (193)
Q Consensus 38 ~v~~~~~fl~~~~a~~l~~~L~~~ 61 (193)
.+.++++||++++++.|.+.....
T Consensus 2 ~i~~~~~~ls~~ec~~li~~~~~~ 25 (178)
T smart00702 2 GVVVFHDFLSPAECQKLLEEAEPL 25 (178)
T ss_pred cEEEECCCCCHHHHHHHHHHhhhh
Confidence 478999999999999998877553
No 12
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit. The holoenzyme has the activity (1.14.11.2 from EC) catalysing the reaction: Procollagen L-proline + 2-oxoglutarate + O2 = procollagen trans-4-hydroxy-L-proline + succinate + CO2. The full enzyme consists of a alpha2 beta2 complex with the alpha subunit contributing most of the parts of the active site []. The family also includes lysyl hydrolases, isopenicillin synthases and AlkB. ; GO: 0016491 oxidoreductase activity, 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0055114 oxidation-reduction process; PDB: 3ON7_D 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A ....
Probab=68.55 E-value=4.8 Score=28.34 Aligned_cols=40 Identities=28% Similarity=0.378 Sum_probs=24.8
Q ss_pred ceEEEeeec---CCCCCceecccCCCCcCCCCcEEEEEcC-CeeeeEEeec
Q 029450 134 NSLLLNRYK---GGNDYVGWHADDEKLYGSTPEIASVSFG-CERDFLLKIK 180 (193)
Q Consensus 134 n~~LvN~Y~---dG~d~ig~HsD~e~~lg~~~~IaSlSLG-a~R~F~~r~~ 180 (193)
+.+.+|+|. . ..+++.|.|.+ ..+++|.+- ...-++|...
T Consensus 2 ~~~~~~~Y~~~~~-~~~~~~H~D~~------~~~~Til~~~~~~gL~~~~~ 45 (98)
T PF03171_consen 2 SQLRLNRYPPPEN-GVGIGPHTDDE------DGLLTILFQDEVGGLQVRDD 45 (98)
T ss_dssp -EEEEEEE-SCCG-CEEEEEEEES--------SSEEEEEETSTS-EEEEET
T ss_pred CEEEEEECCCccc-CCceeCCCcCC------CCeEEEEecccchheecccc
Confidence 678999999 6 57999999996 123444443 5556777654
No 13
>PLN00052 prolyl 4-hydroxylase; Provisional
Probab=65.61 E-value=97 Score=27.37 Aligned_cols=32 Identities=3% Similarity=0.072 Sum_probs=23.3
Q ss_pred EEEeCCCCceEEEeCCCCCHHHHHHHHHHHHh
Q 029450 29 MVVDLGNGSEVIYFPRIIKMEDSWKFFDYLNN 60 (193)
Q Consensus 29 ~~~~l~~g~~v~~~~~fl~~~~a~~l~~~L~~ 60 (193)
++..|.-...|.++++||+.+|++.|.+.-..
T Consensus 46 kve~lS~~P~i~~~~nfLs~~Ecd~Li~la~~ 77 (310)
T PLN00052 46 RVKAVSWQPRIFVYKGFLSDAECDHLVKLAKK 77 (310)
T ss_pred eEEEecCCCCEEEECCcCCHHHHHHHHHhccc
Confidence 33334334579999999999999988866543
No 14
>KOG2731 consensus DNA alkylation damage repair protein [RNA processing and modification]
Probab=58.63 E-value=4.2 Score=36.67 Aligned_cols=53 Identities=21% Similarity=0.248 Sum_probs=42.7
Q ss_pred CCceEEEeeecCCCCCceecccCCCC---cCCCCcEEEEEcCCeeeeEEeecCCCCce
Q 029450 132 RFNSLLLNRYKGGNDYVGWHADDEKL---YGSTPEIASVSFGCERDFLLKIKPSKSYQ 186 (193)
Q Consensus 132 ~fn~~LvN~Y~dG~d~ig~HsD~e~~---lg~~~~IaSlSLGa~R~F~~r~~~~~~~~ 186 (193)
-++.|.+|.|.. ..++|.|+|.... ...+-+|.+||.|. ..|-...+...++.
T Consensus 313 lp~i~~~~f~~~-~g~~~~~Q~~~ey~ks~r~nl~Irqv~~~d-~~f~~~~~~d~~~~ 368 (378)
T KOG2731|consen 313 LPDICIVNFYSE-TGSLGLHQDKAEYLKSSRVNLPIRQVSIGD-AEFLYGDQRDEDKG 368 (378)
T ss_pred CcccccccccCC-CcccccchhHHHHHHhhhcCceeEEeccCc-cccccCchhhhhhh
Confidence 479999999999 6799999997444 45677999999999 79988776655543
No 15
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A ....
Probab=34.56 E-value=20 Score=25.10 Aligned_cols=19 Identities=42% Similarity=0.816 Sum_probs=15.6
Q ss_pred EEEeeecCCCCCceecccCC
Q 029450 136 LLLNRYKGGNDYVGWHADDE 155 (193)
Q Consensus 136 ~LvN~Y~dG~d~ig~HsD~e 155 (193)
|-+++|.+| +.++||.|..
T Consensus 1 ~~~~~y~~G-~~~~~H~D~~ 19 (100)
T PF13640_consen 1 MQLNRYPPG-GFFGPHTDNS 19 (100)
T ss_dssp -EEEEEETT-EEEEEEESSS
T ss_pred CEEEEECcC-CEEeeeECCC
Confidence 457899996 7999999994
No 16
>PF13661 2OG-FeII_Oxy_4: 2OG-Fe(II) oxygenase superfamily
Probab=28.12 E-value=80 Score=21.07 Aligned_cols=21 Identities=38% Similarity=0.990 Sum_probs=16.6
Q ss_pred EEEeeecCCCCCceecccCCCC
Q 029450 136 LLLNRYKGGNDYVGWHADDEKL 157 (193)
Q Consensus 136 ~LvN~Y~dG~d~ig~HsD~e~~ 157 (193)
+-+..|..| +..+||.|....
T Consensus 13 ~~~~~~~~g-~~~~~H~D~~~~ 33 (70)
T PF13661_consen 13 FRFYRYRRG-DFFGWHVDADPS 33 (70)
T ss_pred eeEEEcCCC-CEeeeeEcCCcc
Confidence 455678885 799999998765
No 17
>TIGR01762 chlorin-enz chlorinating enzymes. This model represents a a group of highly homologous enzymes related to dioxygenases which chlorinate amino acid methyl groups. BarB1 and BarB2 are proposed to trichlorinate one of the methyl groups of a leucine residue in the biosynthesis of barbamide in the cyanobacterium Lyngbya majuscula. SyrB2 is proposed to chlorinate the methyl group of threonine in the biosynthesis of syringomycin in Pseudomonas syringae. CmaB is proposed to chlorinate the beta-methyl group of alloisoleucine in the process of ring closure in the biosynthesis of coronamic acid, a component of coronatine also in Pseudomonas syringae.
Probab=27.84 E-value=1.4e+02 Score=25.82 Aligned_cols=23 Identities=13% Similarity=-0.003 Sum_probs=19.4
Q ss_pred EEEeCCCCCHHHHHHHHHHHHhc
Q 029450 39 VIYFPRIIKMEDSWKFFDYLNNR 61 (193)
Q Consensus 39 v~~~~~fl~~~~a~~l~~~L~~~ 61 (193)
...++++|++++.+.|.+.+...
T Consensus 16 yv~~~~~~s~eei~~L~~~~~~~ 38 (288)
T TIGR01762 16 FIGPFTLYSPEEMKETWKRIRLR 38 (288)
T ss_pred EEeCcCCCCHHHHHHHHHHHHHH
Confidence 67899999999999998887543
No 18
>KOG4417 consensus Predicted endonuclease [General function prediction only]
Probab=23.46 E-value=83 Score=26.70 Aligned_cols=41 Identities=24% Similarity=0.437 Sum_probs=31.0
Q ss_pred eEEEeCCCCCHHHHHHHHHHHHhcC----CCCCceEeecCcEEEe
Q 029450 38 EVIYFPRIIKMEDSWKFFDYLNNRI----PWNRPTIRVFGRSCLQ 78 (193)
Q Consensus 38 ~v~~~~~fl~~~~a~~l~~~L~~~~----~w~~~~~~~~Gk~~~~ 78 (193)
.+-|+|+||+-.||..+++.|..-+ +|+.+-+-+-|.....
T Consensus 84 e~pYvPgfLafREa~v~l~~L~~v~~erh~fr~dvilvDGnG~lH 128 (261)
T KOG4417|consen 84 ELPYVPGFLAFREAEVMLDFLKSVITERHEFRPDVILVDGNGELH 128 (261)
T ss_pred ccCcCccceeeehhHHHHHHHHhcccccCCccccEEEEcCCceEc
Confidence 5679999999999999888887643 4665656666776666
No 19
>PF12088 DUF3565: Protein of unknown function (DUF3565); InterPro: IPR021948 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 30 to 78 amino acids in length. This protein has two conserved sequence motifs: WVA and CGH.
Probab=23.41 E-value=58 Score=21.96 Aligned_cols=27 Identities=33% Similarity=0.612 Sum_probs=19.8
Q ss_pred ceecccCCCCcCCCCcEEEEEcCCeeeeEEeecC
Q 029450 148 VGWHADDEKLYGSTPEIASVSFGCERDFLLKIKP 181 (193)
Q Consensus 148 ig~HsD~e~~lg~~~~IaSlSLGa~R~F~~r~~~ 181 (193)
||+|.|+|.. =||-|+=|-+.- +||.+
T Consensus 1 vg~h~Dee~h-----WVA~L~CGH~QH--vRH~P 27 (61)
T PF12088_consen 1 VGFHQDEEGH-----WVAELSCGHTQH--VRHDP 27 (61)
T ss_pred CCccccccCC-----EEEEeccccccc--ccCCC
Confidence 7999999864 589999887643 44444
No 20
>PF09859 Oxygenase-NA: Oxygenase, catalysing oxidative methylation of damaged DNA; InterPro: IPR018655 This family of various hypothetical prokaryotic proteins, has no known function.
Probab=22.70 E-value=97 Score=25.16 Aligned_cols=54 Identities=24% Similarity=0.212 Sum_probs=35.0
Q ss_pred CCCCCchHHHHHHHHHhhcCCCCCceEEEeeecCCCCCceecccCCCCc-CCCCcEEEEE
Q 029450 110 SWDDFPPLKDILDIVLKVLPGSRFNSLLLNRYKGGNDYVGWHADDEKLY-GSTPEIASVS 168 (193)
Q Consensus 110 ~w~~~P~L~~l~~~~~e~~~g~~fn~~LvN~Y~dG~d~ig~HsD~e~~l-g~~~~IaSlS 168 (193)
.||+ .+.+++++..+ .|+.=-..|+..|..| |....|+|-..+. =+-.+|+-||
T Consensus 42 ~yP~--~~~~fl~~ch~--aGQ~rptplllrY~~g-dyn~LHqdlyGe~vFPlQvv~lLs 96 (173)
T PF09859_consen 42 RYPA--TLAEFLARCHA--AGQTRPTPLLLRYGPG-DYNCLHQDLYGEHVFPLQVVILLS 96 (173)
T ss_pred CCCc--cHHHHHHHHHh--ccCCCCchhhheeCCC-CccccccCCCCCcccCeEEEEEcC
Confidence 5763 78888776544 5655555677789885 8999999964442 1223444444
No 21
>cd06397 PB1_UP1 Uncharacterized protein 1. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=22.58 E-value=1.1e+02 Score=21.85 Aligned_cols=60 Identities=8% Similarity=-0.015 Sum_probs=39.0
Q ss_pred chHHHHHHHHHhhcCCCCCceEEEeeecCCCCCceecccCCCCcCCCCcEEEEEcCCeeeeEE
Q 029450 115 PPLKDILDIVLKVLPGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLL 177 (193)
Q Consensus 115 P~L~~l~~~~~e~~~g~~fn~~LvN~Y~dG~d~ig~HsD~e~~lg~~~~IaSlSLGa~R~F~~ 177 (193)
|.+..+.+++ +.+...+.++.++-|-++++|-|..-+|++-. .--.++.-++|..+.|-+
T Consensus 20 pt~~~L~~kl-~~Lf~lp~~~~~vtYiDeD~D~ITlssd~eL~--d~~~~~~~~~~~v~k~~~ 79 (82)
T cd06397 20 PTWEALASKL-ENLYNLPEIKVGVTYIDNDNDEITLSSNKELQ--DFYRLSHRESTEVIKLNV 79 (82)
T ss_pred ccHHHHHHHH-HHHhCCChhHeEEEEEcCCCCEEEecchHHHH--HHHHhcccccCceeEeec
Confidence 5666665544 44667777788999999988999999987643 111233334666555544
Done!