Query 029450
Match_columns 193
No_of_seqs 167 out of 1091
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 21:36:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029450.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029450hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3s57_A Alpha-ketoglutarate-dep 100.0 7E-36 2.4E-40 245.5 14.3 138 35-183 9-149 (204)
2 2iuw_A Alkylated repair protei 100.0 1.5E-32 5.2E-37 230.3 15.3 147 24-182 26-174 (238)
3 3i3q_A Alpha-ketoglutarate-dep 99.9 9.3E-27 3.2E-31 192.2 11.7 144 31-191 3-160 (211)
4 3tht_A Alkylated DNA repair pr 99.9 5.8E-25 2E-29 193.2 13.1 142 27-191 103-250 (345)
5 3lfm_A Protein FTO; FAT MASS a 99.6 4.5E-15 1.5E-19 132.5 7.5 63 44-113 45-110 (495)
6 2jig_A Prolyl-4 hydroxylase; h 88.7 6 0.00021 31.3 11.2 100 27-155 12-118 (224)
7 3dkq_A PKHD-type hydroxylase S 84.7 1.3 4.6E-05 36.4 5.3 37 31-68 13-49 (243)
8 3itq_A Prolyl 4-hydroxylase, a 72.6 14 0.00049 29.5 7.7 111 28-168 30-147 (216)
9 2k5c_A Uncharacterized protein 44.6 18 0.00063 25.0 3.0 37 35-71 55-94 (95)
10 3kt7_A PKHD-type hydroxylase T 21.8 3.8E+02 0.013 25.0 8.6 31 38-68 35-65 (633)
No 1
>3s57_A Alpha-ketoglutarate-dependent dioxygenase ALKB HO; protein-DNA complex, jelly-roll fold, dioxygenase, dsDNA BIN plasma, oxidoreductase-DNA complex; HET: AKG; 1.60A {Homo sapiens} PDB: 3s5a_A* 3rzg_A 3rzl_A 3rzh_A* 3rzj_A* 3rzk_A* 3rzm_A 3bty_A* 3buc_A* 3h8r_A* 3h8o_A* 3h8x_A* 3btx_A* 3bu0_A* 3btz_A*
Probab=100.00 E-value=7e-36 Score=245.52 Aligned_cols=138 Identities=32% Similarity=0.539 Sum_probs=125.2
Q ss_pred CCceEEEeCCCCCHHHHHHHHHHHHhcCCC---CCceEeecCcEEEeeeeecCCeeeEEEcCCCCcceeccCCCCCCCCC
Q 029450 35 NGSEVIYFPRIIKMEDSWKFFDYLNNRIPW---NRPTIRVFGRSCLQVACISTPRDTCYVASEGVTQLIYSGYRPHPYSW 111 (193)
Q Consensus 35 ~g~~v~~~~~fl~~~~a~~l~~~L~~~~~w---~~~~~~~~Gk~~~~~~~~~~pR~~~wy~~~~~~~Y~Ysg~~~~~~~w 111 (193)
+| -..++++||+.++|+.||++|+++++| ++++++||||.+.+ ||+++||++.+. .|+|+|..+.+.+|
T Consensus 9 ~~-~~~~~~~~l~~~~a~~l~~~l~~~~~w~~~~~~~~~~~gk~~~~------pR~~~wyg~~~~-~Y~Ysg~~~~~~pw 80 (204)
T 3s57_A 9 EG-LDSSYTVLFGKAEADEIFQELEKEVEYFTGALARVQVFGKWHSV------PRKQATYGDAGL-TYTFSGLTLSPKPW 80 (204)
T ss_dssp TT-EEEEEEECSCHHHHHHHHHHHHHHCCCCCGGGGEEEETTEEEEC------SSEEEEEECTTC-CEEETTEEECCEEC
T ss_pred CC-ceEEecCcCCHHHHHHHHHHHHHhCCCCCcccceEEECCeEecc------CcEEEEECCCCC-CcccCCCcccCCCC
Confidence 45 355799999999999999999999999 78899999999998 999999999888 59999999999999
Q ss_pred CCCchHHHHHHHHHhhcCCCCCceEEEeeecCCCCCceecccCCCCcCCCCcEEEEEcCCeeeeEEeecCCC
Q 029450 112 DDFPPLKDILDIVLKVLPGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPSK 183 (193)
Q Consensus 112 ~~~P~L~~l~~~~~e~~~g~~fn~~LvN~Y~dG~d~ig~HsD~e~~lg~~~~IaSlSLGa~R~F~~r~~~~~ 183 (193)
| |+|..+++.+ ++.+|..||+||||+|++|.|+||||+|++.+++.+++|||||||++|.|.|+++.++
T Consensus 81 p--~~L~~l~~~~-~~~~g~~~n~~LvN~Y~~G~d~i~~H~D~~~~~~~~~~IasvSLG~~~~f~~~~~~~~ 149 (204)
T 3s57_A 81 I--PVLERIRDHV-SGVTGQTFNFVLINRYKDGSDHICEHRDDERELAPGSPIASVSFGASRDFVFRHKDSR 149 (204)
T ss_dssp C--HHHHHHHHHH-HHHHCCCCSEEEEEEESSTTCCEEEECCCCTTBCTTCCEEEEEEESCEEEEEEEGGGC
T ss_pred C--HHHHHHHHHH-HHHhCCCCceeEEEEECCCCCcccceecChhhccCCCcEEEEECCCceEEEEEEcCCC
Confidence 8 6888887654 5568999999999999999889999999999999999999999999999999997644
No 2
>2iuw_A Alkylated repair protein ALKB homolog 3; oxidoreductase, DNA/RNA repair, demethylase, beta jellyroll; HET: AKG; 1.50A {Homo sapiens} SCOP: b.82.2.10
Probab=100.00 E-value=1.5e-32 Score=230.32 Aligned_cols=147 Identities=31% Similarity=0.526 Sum_probs=127.8
Q ss_pred hccccEEEeCCCC-ceEEEeCCCCCHHHHHHHHHHHHhcCCCCCceEeecCcEEEeeeeecCCeeeEEEcCCCCcceecc
Q 029450 24 QKKQRMVVDLGNG-SEVIYFPRIIKMEDSWKFFDYLNNRIPWNRPTIRVFGRSCLQVACISTPRDTCYVASEGVTQLIYS 102 (193)
Q Consensus 24 ~~~~~~~~~l~~g-~~v~~~~~fl~~~~a~~l~~~L~~~~~w~~~~~~~~Gk~~~~~~~~~~pR~~~wy~~~~~~~Y~Ys 102 (193)
++|..++..++.| +.+.|+++||+.+++++||+.|+++++|++....+||+.+.+ ||+++||++ . .|+|+
T Consensus 26 ~~g~~~~~~~p~~i~gl~~~~~fl~~~e~~~Ll~~l~~~~~w~~~~~~~~g~~~~~------~R~~~~~g~--~-~Y~Ys 96 (238)
T 2iuw_A 26 REGVYEISLSPTGVSRVCLYPGFVDVKEADWILEQLCQDVPWKQRTGIREDITYQQ------PRLTAWYGE--L-PYTYS 96 (238)
T ss_dssp SSEEEEEECCSSSCEEEEEETTSSCHHHHHHHHHHHHHHSCCBCCEEESSSCEEEC------SSEEEEEEC--C-CTTSC
T ss_pred CCcceeeecCCCCCCcEEEECCCCCHHHHHHHHHHHHHhCCCccCceecCCccccc------CCeeEEcCC--C-ccccC
Confidence 3455666666664 479999999999999999999999999999999999999988 999999995 3 59999
Q ss_pred CCCCCCC-CCCCCchHHHHHHHHHhhcCCCCCceEEEeeecCCCCCceecccCCCCcCCCCcEEEEEcCCeeeeEEeecC
Q 029450 103 GYRPHPY-SWDDFPPLKDILDIVLKVLPGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKP 181 (193)
Q Consensus 103 g~~~~~~-~w~~~P~L~~l~~~~~e~~~g~~fn~~LvN~Y~dG~d~ig~HsD~e~~lg~~~~IaSlSLGa~R~F~~r~~~ 181 (193)
|....+. +|| |.|..+++++ ++.++..||+||||+|++|+|+|+||+|++..++++++|||||||++|.|.|+++.
T Consensus 97 ~~~~~~~p~wp--~~l~~l~~~~-~~~~g~~~n~~LvN~Y~~G~d~i~~H~D~~~~~~~~~~IaslSLG~~~~f~f~~~~ 173 (238)
T 2iuw_A 97 RITMEPNPHWH--PVLRTLKNRI-EENTGHTFNSLLCNLYRNEKDSVDWHSDDEPSLGRCPIIASLSFGATRTFEMRKKP 173 (238)
T ss_dssp HHHHCCBSSCC--HHHHHHHHHH-HHHHSCCCCEEEEEEECSTTCCEEEECCCCGGGCSSCCEEEEEEESCEEEEEEECC
T ss_pred CcccCCCCCCC--HHHHHHHHHH-HHHhCCCCCEEEEEEECCCCCceeCCcCChhhcCCCCcEEEEECCCCEEEEEeccC
Confidence 9877776 798 5787776654 44568899999999999998999999999999999999999999999999999976
Q ss_pred C
Q 029450 182 S 182 (193)
Q Consensus 182 ~ 182 (193)
.
T Consensus 174 ~ 174 (238)
T 2iuw_A 174 P 174 (238)
T ss_dssp C
T ss_pred C
Confidence 5
No 3
>3i3q_A Alpha-ketoglutarate-dependent dioxygenase ALKB; beta jellyroll, DNA damage, DNA repair, iron, M binding, oxidoreductase; HET: AKG; 1.40A {Escherichia coli} SCOP: b.82.2.10 PDB: 2fd8_A* 2fdg_A* 2fdh_A* 2fdf_A* 2fdj_A 2fdk_A* 2fdi_A* 3i2o_A* 3i3m_A* 3i49_A* 3t4h_B* 3t3y_A* 3t4v_A* 3o1t_A* 3o1o_A* 3o1m_A* 3o1r_A* 3o1s_A* 3o1p_A* 3o1u_A* ...
Probab=99.94 E-value=9.3e-27 Score=192.22 Aligned_cols=144 Identities=19% Similarity=0.294 Sum_probs=112.7
Q ss_pred EeCCCCceEEEeCCCCCHHHHHHHHHHHHh---cCCCCCceEeecCcEEEeeeeecCCeee-----EEEcCCCCcceecc
Q 029450 31 VDLGNGSEVIYFPRIIKMEDSWKFFDYLNN---RIPWNRPTIRVFGRSCLQVACISTPRDT-----CYVASEGVTQLIYS 102 (193)
Q Consensus 31 ~~l~~g~~v~~~~~fl~~~~a~~l~~~L~~---~~~w~~~~~~~~Gk~~~~~~~~~~pR~~-----~wy~~~~~~~Y~Ys 102 (193)
..|++| +.++|+|+. +++++|++++++ +.|+++. .+.|+..++ +|++ +||++.. .|+|+
T Consensus 3 ~~~~~g--~~~~~~~~~-~~~~~l~~~~~~~~~~~p~~~~--~~pgg~~~s------~~~~~~g~~~W~~d~~--~Y~Ys 69 (211)
T 3i3q_A 3 EPLAAG--AVILRRFAF-NAAEQLIRDINDVASQSPFRQM--VTPGGYTMS------VAMTNCGHLGWTTHRQ--GYLYS 69 (211)
T ss_dssp CCCBTT--BEEETTTTT-TTHHHHHHHHHHHHHHSCCBCC--BCTTSCBCS------SEEEEESSBEEEEETT--EEEEE
T ss_pred eecCCC--CEEECCcCh-HHHHHHHHHHHHHHhcCCCcee--EcCCCCcCc------hhhcccccceeecCCC--CcCcC
Confidence 346665 889999997 678899999864 3445444 345777778 8998 8999874 59999
Q ss_pred CCC-CCCCCCCCCc-hHHHHHHHHHhhcCC---CCCceEEEeeecCCCCCceeccc-CCCCcCCCCcEEEEEcCCeeeeE
Q 029450 103 GYR-PHPYSWDDFP-PLKDILDIVLKVLPG---SRFNSLLLNRYKGGNDYVGWHAD-DEKLYGSTPEIASVSFGCERDFL 176 (193)
Q Consensus 103 g~~-~~~~~w~~~P-~L~~l~~~~~e~~~g---~~fn~~LvN~Y~dG~d~ig~HsD-~e~~lg~~~~IaSlSLGa~R~F~ 176 (193)
|.. ..+.+|+++| +|..+++++.+ ..| ..+|+||||+|++|+ +|+||+| +|..++ ++|||||||++|.|.
T Consensus 70 ~~~~~~~~pw~~~P~~L~~l~~~~~~-~~g~~~~~pn~~LvN~Y~~G~-~i~~H~D~~e~~~~--~pI~svSLG~~~~f~ 145 (211)
T 3i3q_A 70 PIDPQTNKPWPAMPQSFHNLCQRAAT-AAGYPDFQPDACLINRYAPGA-KLSLHQDKDEPDLR--APIVSVSLGLPAIFQ 145 (211)
T ss_dssp SBCTTTSSBCCCCCHHHHHHHHHHHH-HTTCTTCCCCEEEEEEECTTC-CEEEECCCCCSCTT--SCEEEEEEESCEEEE
T ss_pred CCccCCCCCCCchHHHHHHHHHHHHH-hcCCCCcCCCEEEEEEEcCCC-CcccccCCCccccC--CCEEEEECCCCeEEE
Confidence 988 6788999877 47777765543 344 356999999999985 9999999 788776 569999999999999
Q ss_pred EeecCCCCceeEEec
Q 029450 177 LKIKPSKSYQEELMM 191 (193)
Q Consensus 177 ~r~~~~~~~~~~~~l 191 (193)
|+++..+....++.|
T Consensus 146 f~~~~~~~~~~~i~L 160 (211)
T 3i3q_A 146 FGGLKRNDPLKRLLL 160 (211)
T ss_dssp ECCSSTTSCCEEEEE
T ss_pred EecccCCCceEEEEC
Confidence 999766555666655
No 4
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.92 E-value=5.8e-25 Score=193.23 Aligned_cols=142 Identities=18% Similarity=0.221 Sum_probs=91.4
Q ss_pred ccEEEeCCCCceEEEeCCCCCHHHHHHHHHHHHhcCCCCCceEeecCcEEEeeeeecCCeeeEEEcCCCCcceeccCCCC
Q 029450 27 QRMVVDLGNGSEVIYFPRIIKMEDSWKFFDYLNNRIPWNRPTIRVFGRSCLQVACISTPRDTCYVASEGVTQLIYSGYRP 106 (193)
Q Consensus 27 ~~~~~~l~~g~~v~~~~~fl~~~~a~~l~~~L~~~~~w~~~~~~~~Gk~~~~~~~~~~pR~~~wy~~~~~~~Y~Ysg~~~ 106 (193)
..++..|++| +.|+|+||+.+|++ .|.++++|.+..+.|+|+.+.+ +|+++|||- .|+|++..+
T Consensus 103 ~~~~~~lp~G--l~~~p~fis~~Ee~----~Ll~~i~w~~~~~~~~~~~~l~------~Rr~~~yG~----~Y~Ys~~~~ 166 (345)
T 3tht_A 103 ELRPQALPPG--LMVVEEIISSEEEK----MLLESVDWTEDTDNQNSQKSLK------HRRVKHFGY----EFHYENNNV 166 (345)
T ss_dssp EEECCSCCTT--EEEETTCSCHHHHH----HHHTTCC----------------------CEEECCC--------------
T ss_pred ccccccCCCc--eEEEcCcCCHHHHH----HHHHhcccCCccccccCccccc------CceEEEECC----ccccccccc
Confidence 3445678877 99999999999987 4567889999999999999988 999999993 599998776
Q ss_pred C-----CCCCCCCchHHHHHHHHHh-hcCCCCCceEEEeeecCCCCCceecccCCCCcCCCCcEEEEEcCCeeeeEEeec
Q 029450 107 H-----PYSWDDFPPLKDILDIVLK-VLPGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIK 180 (193)
Q Consensus 107 ~-----~~~w~~~P~L~~l~~~~~e-~~~g~~fn~~LvN~Y~dG~d~ig~HsD~e~~lg~~~~IaSlSLGa~R~F~~r~~ 180 (193)
. +.+|| ++|..+++++.+ ...+..||+||||+|++| ++|+||+|++..++ ++|||||||++|.|.|+++
T Consensus 167 ~~~~p~p~~~P--~~L~~l~~r~~~~~~~~~~~n~~lvN~Y~~G-~~I~~H~D~~~~~~--~~I~slSLG~~~~f~f~~~ 241 (345)
T 3tht_A 167 DKDKPLSGGLP--DICESFLEKWLRKGYIKHKPDQMTINQYEPG-QGIPAHIDTHSAFE--DEIVSLSLGSEIVMDFKHP 241 (345)
T ss_dssp --------CCC--HHHHHHHHHHHHHTSCSSCCSEEEEEEECTT-CCEEEECCCTTTBC--SCEEEEEESSCEEEEEECT
T ss_pred ccCCCCCcCcC--HHHHHHHHHHHhcccCCCCCCEEEEEEecCC-CCEeeccCCchhcC--CeEEEEECCCceeEEEccC
Confidence 4 45576 478888776542 356789999999999997 59999999988776 7899999999999999986
Q ss_pred CCCCceeEEec
Q 029450 181 PSKSYQEELMM 191 (193)
Q Consensus 181 ~~~~~~~~~~l 191 (193)
.. ...++.|
T Consensus 242 ~~--~~~~l~L 250 (345)
T 3tht_A 242 DG--IAVPVML 250 (345)
T ss_dssp TS--CEEEEEE
T ss_pred CC--ceEEEEc
Confidence 53 2344443
No 5
>3lfm_A Protein FTO; FAT MASS and obesity associated (FTO) protein, Fe2+/2-oxoGlu (2-OG)-dependent oxidative DNA/RNA demethylases, oxidoreduc; HET: 3DT OGA; 2.50A {Homo sapiens}
Probab=99.55 E-value=4.5e-15 Score=132.55 Aligned_cols=63 Identities=19% Similarity=0.267 Sum_probs=57.3
Q ss_pred CCCCHH---HHHHHHHHHHhcCCCCCceEeecCcEEEeeeeecCCeeeEEEcCCCCcceeccCCCCCCCCCCC
Q 029450 44 RIIKME---DSWKFFDYLNNRIPWNRPTIRVFGRSCLQVACISTPRDTCYVASEGVTQLIYSGYRPHPYSWDD 113 (193)
Q Consensus 44 ~fl~~~---~a~~l~~~L~~~~~w~~~~~~~~Gk~~~~~~~~~~pR~~~wy~~~~~~~Y~Ysg~~~~~~~w~~ 113 (193)
+-|+.+ +.+++|+.|+++++|+++.++||||.+.+ ||++||||+.+. .|+|||..+.+.||++
T Consensus 45 ~slp~~LH~~vd~lF~~Ll~ei~WqQD~IrIfGK~v~t------PRLtAWyGD~g~-tY~YSGi~l~p~PWTp 110 (495)
T 3lfm_A 45 SSVSEELHKEVQEAFLTLHKHGCLFRDLVRIQGKDLLT------PVSRILIGNPGC-TYKYLNTRLFTVPWPV 110 (495)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTTCCBCCEECGGGCCEEC------SSEEEEEESTTB-EEEETTEEEECEECCC
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCCCCchhcCCceecc------ceeEEEecCCCC-ceecCCCcccCCCCCc
Confidence 445654 67889999999999999999999999998 999999999999 5999999999999984
No 6
>2jig_A Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {Chlamydomonas reinhardtii} PDB: 3gze_A 2v4a_A 2jij_A
Probab=88.71 E-value=6 Score=31.29 Aligned_cols=100 Identities=12% Similarity=0.087 Sum_probs=56.7
Q ss_pred ccEEEeCCCCceEEEeCCCCCHHHHHHHHHHHHhcCCCCCceEee--cCcEEEeeeeecCCee--eEEEcCCCCcceecc
Q 029450 27 QRMVVDLGNGSEVIYFPRIIKMEDSWKFFDYLNNRIPWNRPTIRV--FGRSCLQVACISTPRD--TCYVASEGVTQLIYS 102 (193)
Q Consensus 27 ~~~~~~l~~g~~v~~~~~fl~~~~a~~l~~~L~~~~~w~~~~~~~--~Gk~~~~~~~~~~pR~--~~wy~~~~~~~Y~Ys 102 (193)
+.+.+.+.+ .+.++++||+++|++.|.+.+... +.+-.+.- .|+.... .-|. .+|....
T Consensus 12 k~e~ls~~P--~i~~~~~fLs~~Ec~~li~~~~~~--~~~s~v~~~~~g~~~~~-----~~R~s~~~~l~~~-------- 74 (224)
T 2jig_A 12 EVVHLSWSP--RAFLLKNFLSDEECDYIVEKARPK--MVKSSVVDNESGKSVDS-----EIRTSTGTWFAKG-------- 74 (224)
T ss_dssp CEEEEETTT--TEEEETTCSCHHHHHHHHHHHGGG--CEECEEEETTTTEEEEC-----SSBCSEEEECCTT--------
T ss_pred ceEEEeCCC--CEEEEcccCCHHHHHHHHHHhhcc--CeeeeeecCCCCccccc-----CCEEEeeeEecCC--------
Confidence 345666655 699999999999999999888652 33322211 1222111 1121 2233210
Q ss_pred CCCCCCCCCCCCchHHHHHHHHHhhcCCCC---CceEEEeeecCCCCCceecccCC
Q 029450 103 GYRPHPYSWDDFPPLKDILDIVLKVLPGSR---FNSLLLNRYKGGNDYVGWHADDE 155 (193)
Q Consensus 103 g~~~~~~~w~~~P~L~~l~~~~~e~~~g~~---fn~~LvN~Y~dG~d~ig~HsD~e 155 (193)
. .|.+..+.+++ ...++.. .....+..|..| ..-.+|.|..
T Consensus 75 ---------~-~~~~~~i~~ri-~~~~gl~~~~~e~~qv~rY~~G-~~y~~H~D~~ 118 (224)
T 2jig_A 75 ---------E-DSVISKIEKRV-AQVTMIPLENHEGLQVLHYHDG-QKYEPHYDYF 118 (224)
T ss_dssp ---------C-SHHHHHHHHHH-HHHHTCCGGGBCCCEEEEEETT-CCEEEECCSS
T ss_pred ---------C-CHHHHHHHHHH-HHHhCCCcccccceEEEecCCC-ccccCcccCC
Confidence 0 13455554443 3345543 334788899997 5789999964
No 7
>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural genomics, JOI for structural genomics, JCSG; 2.26A {Shewanella baltica OS155}
Probab=84.75 E-value=1.3 Score=36.37 Aligned_cols=37 Identities=14% Similarity=0.202 Sum_probs=28.3
Q ss_pred EeCCCCceEEEeCCCCCHHHHHHHHHHHHhcCCCCCce
Q 029450 31 VDLGNGSEVIYFPRIIKMEDSWKFFDYLNNRIPWNRPT 68 (193)
Q Consensus 31 ~~l~~g~~v~~~~~fl~~~~a~~l~~~L~~~~~w~~~~ 68 (193)
..|--+..+..+++||+++|++.|.+.+ +..+|....
T Consensus 13 ~~~~~~~~i~~i~dvLs~~Ec~~li~~~-e~~~~~dg~ 49 (243)
T 3dkq_A 13 ENLYFQGMLIEIPNVFSKQEVSHLREQL-DARRWIDGN 49 (243)
T ss_dssp -CCCCBTTBEEECCSSCHHHHHHHHHHH-HTSCCEEEC
T ss_pred cccccCCCEEEECCCCCHHHHHHHHHHH-hhCCCccCc
Confidence 4455567799999999999999998877 456786433
No 8
>3itq_A Prolyl 4-hydroxylase, alpha subunit domain protei; double-stranded beta helix, alpha-keto dependent non-heme iron oxygenase; 1.40A {Bacillus anthracis str}
Probab=72.63 E-value=14 Score=29.47 Aligned_cols=111 Identities=11% Similarity=0.075 Sum_probs=60.2
Q ss_pred cEEEeCCCCceEEEeCCCCCHHHHHHHHHHHHhcCCCCCceEeecCcEEEeeeeecCCeeeEEEcCCCCcceeccCCCCC
Q 029450 28 RMVVDLGNGSEVIYFPRIIKMEDSWKFFDYLNNRIPWNRPTIRVFGRSCLQVACISTPRDTCYVASEGVTQLIYSGYRPH 107 (193)
Q Consensus 28 ~~~~~l~~g~~v~~~~~fl~~~~a~~l~~~L~~~~~w~~~~~~~~Gk~~~~~~~~~~pR~~~wy~~~~~~~Y~Ysg~~~~ 107 (193)
..+..+.....+.++.+||+++|++.|.+..... +++-.+. .+. . ...++-|...
T Consensus 30 v~v~~l~~~P~i~~~~~fLs~~Ec~~Li~~a~~~--l~~s~v~-~~~---~-----------------~~~~RtS~~~-- 84 (216)
T 3itq_A 30 IQIISKFEEPLIVVLGNVLSDEECDELIELSKSK--LARSKVG-SSR---D-----------------VNDIRTSSGA-- 84 (216)
T ss_dssp EEEEEEETTTTEEEEESCSCHHHHHHHHHHHHHH--HC------------C-----------------CCCGGGTTCE--
T ss_pred EEEEEeeCCCCEEEECCcCCHHHHHHHHHHhhcc--cccceec-cCC---c-----------------cCCcEeeeeE--
Confidence 3444454455799999999999999998877543 2222210 010 0 0013322211
Q ss_pred CCCCCC-CchHHHHHHHHHhhcCCCC---CceEEEeeecCCCCCceecccCCCCc---CCCCcEEEEE
Q 029450 108 PYSWDD-FPPLKDILDIVLKVLPGSR---FNSLLLNRYKGGNDYVGWHADDEKLY---GSTPEIASVS 168 (193)
Q Consensus 108 ~~~w~~-~P~L~~l~~~~~e~~~g~~---fn~~LvN~Y~dG~d~ig~HsD~e~~l---g~~~~IaSlS 168 (193)
|-+ .|.+..+.+++ ...+|.. ....-+..|..| ..-.+|.|....- ..+.-++++-
T Consensus 85 ---wl~~~~~v~~i~~Ri-~~~~gl~~~~~E~lqv~~Y~~G-~~y~~H~D~~~~~~~~~~~~R~~T~l 147 (216)
T 3itq_A 85 ---FLDDNELTAKIEKRI-SSIMNVPASHGEGLHILNYEVD-QQYKAHYDYFAEHSRSAANNRISTLV 147 (216)
T ss_dssp ---ECCCCHHHHHHHHHH-HHHHTSCGGGBCCCEEEEECBT-CCEEEECSSCCTTSGGGGGCEEEEEE
T ss_pred ---EeCCcHHHHHHHHHH-HHhcCceeccccceeEEEeCCC-CccccccCCCcCCCcccCCceEEEEE
Confidence 211 14555554544 4466654 334778889997 5779999975421 1133456654
No 9
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=44.61 E-value=18 Score=24.96 Aligned_cols=37 Identities=16% Similarity=0.443 Sum_probs=29.9
Q ss_pred CCceEEEeCCCCCHHHHHHHHHHHHh---cCCCCCceEee
Q 029450 35 NGSEVIYFPRIIKMEDSWKFFDYLNN---RIPWNRPTIRV 71 (193)
Q Consensus 35 ~g~~v~~~~~fl~~~~a~~l~~~L~~---~~~w~~~~~~~ 71 (193)
+.+.-.++...|+..+|...|+-|-+ .++|....+++
T Consensus 55 P~CgEEFyG~~Lp~~EaeKVFELLNdFkGsIDwenkkVrl 94 (95)
T 2k5c_A 55 PVCGEEFYGKTLPRREAEKVFELLNDFKGGIDWENKRVKL 94 (95)
T ss_dssp TTTCCEEETTSSCTTTHHHHHHHHHSCSSSCBTTTTBCCC
T ss_pred CCccHHHhcccCChHHHHHHHHHHHHccCccccccceeec
Confidence 34556789999999999999998865 58898887654
No 10
>3kt7_A PKHD-type hydroxylase TPA1; double-stranded beta helix fold, dioxygenase, iron, mRNP complex, prolyl hydroxylase; HET: AKG; 1.77A {Saccharomyces cerevisiae} PDB: 3kt1_A 3kt4_A 3mgu_A
Probab=21.81 E-value=3.8e+02 Score=24.95 Aligned_cols=31 Identities=3% Similarity=-0.010 Sum_probs=25.5
Q ss_pred eEEEeCCCCCHHHHHHHHHHHHhcCCCCCce
Q 029450 38 EVIYFPRIIKMEDSWKFFDYLNNRIPWNRPT 68 (193)
Q Consensus 38 ~v~~~~~fl~~~~a~~l~~~L~~~~~w~~~~ 68 (193)
....+++||+.+.+.++.+.+.+.+.|....
T Consensus 35 pH~VIdnfl~d~lle~V~~Efp~~i~f~~Ke 65 (633)
T 3kt7_A 35 NWGTIHELVNDDLLRAVRKEIETEIHFTKKE 65 (633)
T ss_dssp CCEEESSCBCHHHHHHHHHHHHHHCCCEEEE
T ss_pred ceEEECCCCCHHHHHHHHHHhhhccCccccc
Confidence 4668999999988888999988788886554
Done!