Query 029451
Match_columns 193
No_of_seqs 35 out of 37
Neff 2.6
Searched_HMMs 29240
Date Mon Mar 25 21:38:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029451.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029451hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pcf_A P15, transcriptional co 24.6 29 0.001 24.2 1.4 22 168-189 7-28 (66)
2 4dx8_H KREV interaction trappe 24.2 20 0.00068 30.4 0.5 15 64-78 126-140 (203)
3 1pk8_A RAT synapsin I; ATP bin 17.7 27 0.00092 31.7 0.0 8 6-13 73-80 (422)
4 3iag_C Recombining binding pro 17.6 84 0.0029 29.1 3.2 11 3-13 177-187 (422)
5 2igt_A SAM dependent methyltra 13.9 58 0.002 27.3 1.1 17 37-53 37-53 (332)
6 4agh_A Mosub1, transcription c 13.9 65 0.0022 26.0 1.4 22 168-189 53-74 (158)
7 2dnl_A Cytoplasmic polyadenyla 9.6 1.5E+02 0.0052 20.2 2.0 12 33-44 89-100 (114)
8 2lv4_A Putative outer membrane 9.6 81 0.0028 25.5 0.6 7 13-19 20-26 (146)
9 4gwm_A Meprin A subunit beta; 9.2 2.1E+02 0.0071 26.9 3.2 9 45-53 477-485 (592)
10 3lb9_A Endo-1,4-beta-xylanase; 9.0 96 0.0033 25.7 0.8 11 1-13 45-55 (182)
No 1
>1pcf_A P15, transcriptional coactivator PC4; transcriptional cofactor, ssDNA binding, nuclear protein; 1.74A {Homo sapiens} SCOP: d.18.1.1 PDB: 2c62_A 2phe_A
Probab=24.59 E-value=29 Score=24.22 Aligned_cols=22 Identities=36% Similarity=0.401 Sum_probs=19.4
Q ss_pred cccceeeecccCCcceeeeecc
Q 029451 168 ERRKVQWTDTCGSELAEIREFE 189 (193)
Q Consensus 168 ~krkVqW~D~~GkeL~eirEfE 189 (193)
.+|+|.=...-|+.++-||||=
T Consensus 7 ~~rrvtv~~fkG~~~VdIRe~Y 28 (66)
T 1pcf_A 7 KMRYVSVRDFKGKVLIDIREYW 28 (66)
T ss_dssp TTEEEEEEEETTEEEEEEEEEE
T ss_pred CCeEEEEEEeCCCEEEEEEEEE
Confidence 4688888899999999999993
No 2
>4dx8_H KREV interaction trapped protein 1; protein-protien complex, PTB domain, nudix fold, protein-Pro interaction, membrane, nucleus, protein binding; 2.54A {Homo sapiens}
Probab=24.23 E-value=20 Score=30.37 Aligned_cols=15 Identities=33% Similarity=0.862 Sum_probs=6.8
Q ss_pred hhcccCCCCcceeee
Q 029451 64 AKNRLSRGCASFVCF 78 (193)
Q Consensus 64 ~kn~~s~gCASFVCF 78 (193)
+|.-.+.+|++|.||
T Consensus 126 tk~~~~pg~Psfycl 140 (203)
T 4dx8_H 126 TKYTYTPGCPIFYCL 140 (203)
T ss_dssp --------CCEEEEH
T ss_pred CCCCCCCCCCceeeh
Confidence 577788999999998
No 3
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A*
Probab=17.69 E-value=27 Score=31.73 Aligned_cols=8 Identities=88% Similarity=1.556 Sum_probs=0.0
Q ss_pred eeCceeec
Q 029451 6 EGGGFFSS 13 (193)
Q Consensus 6 EgGGfFSs 13 (193)
-|||||||
T Consensus 73 ~~~~~~~s 80 (422)
T 1pk8_A 73 GGGGFFSS 80 (422)
T ss_dssp --------
T ss_pred CCcchhhH
Confidence 37899997
No 4
>3iag_C Recombining binding protein suppressor of hairless; protein-DNA complex, signaling, transcription, notch, activator, alternative splicing; HET: XYL; 2.00A {Mus musculus} PDB: 3brg_C* 3nbn_A 2f8x_C 3v79_C*
Probab=17.57 E-value=84 Score=29.12 Aligned_cols=11 Identities=64% Similarity=1.029 Sum_probs=8.1
Q ss_pred eeeeeCceeec
Q 029451 3 LAVEGGGFFSS 13 (193)
Q Consensus 3 lavEgGGfFSs 13 (193)
|-||||+|..|
T Consensus 177 L~ve~g~f~as 187 (422)
T 3iag_C 177 LHVEGGNFHAS 187 (422)
T ss_dssp EEEETTEEEEE
T ss_pred EEeeCCceEee
Confidence 67898887743
No 5
>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51
Probab=13.93 E-value=58 Score=27.26 Aligned_cols=17 Identities=18% Similarity=0.339 Sum_probs=13.2
Q ss_pred eeeccCcceeeeccCCC
Q 029451 37 MRVSPWNQYQLVDQEPD 53 (193)
Q Consensus 37 mrv~pWNqy~lV~~e~d 53 (193)
+...+||-|+||+.|+.
T Consensus 37 ~~~~~~~~yrl~~~~pG 53 (332)
T 2igt_A 37 LESSGAGDFHLIDSGNG 53 (332)
T ss_dssp EEECCCTTEEEEEEETT
T ss_pred EecCCCCeEEEEcCCCC
Confidence 34478999999997743
No 6
>4agh_A Mosub1, transcription cofactor; ssDNA binding protein; 1.79A {Magnaporthe oryzae}
Probab=13.92 E-value=65 Score=25.96 Aligned_cols=22 Identities=23% Similarity=0.422 Sum_probs=19.8
Q ss_pred cccceeeecccCCcceeeeecc
Q 029451 168 ERRKVQWTDTCGSELAEIREFE 189 (193)
Q Consensus 168 ~krkVqW~D~~GkeL~eirEfE 189 (193)
.+|+|.=..+-|+-|+-||||-
T Consensus 53 ~~rrvtV~~fkG~~~vdIREyY 74 (158)
T 4agh_A 53 DKRRVGISQFKKMDFINIREYY 74 (158)
T ss_dssp SSEEEEEEEETTEEEEEEEEEE
T ss_pred CCcEEEEEeeCCCEEEEeEeEE
Confidence 4788999999999999999994
No 7
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=9.62 E-value=1.5e+02 Score=20.19 Aligned_cols=12 Identities=50% Similarity=1.276 Sum_probs=10.1
Q ss_pred CCCCeeeccCcc
Q 029451 33 DDKPMRVSPWNQ 44 (193)
Q Consensus 33 ~~kpmrv~pWNq 44 (193)
.+|++.|.||..
T Consensus 89 ~~~~~~v~p~~~ 100 (114)
T 2dnl_A 89 KDKPVQIRPWNL 100 (114)
T ss_dssp CSEEEEEECCCC
T ss_pred CCCeeeccCCcc
Confidence 388999999985
No 8
>2lv4_A Putative outer membrane or exported protein; antivirulence, adhesion, protein binding; NMR {Salmonella enterica subsp}
Probab=9.59 E-value=81 Score=25.46 Aligned_cols=7 Identities=71% Similarity=1.132 Sum_probs=5.5
Q ss_pred ccCcccc
Q 029451 13 SSASGYS 19 (193)
Q Consensus 13 sSASGYs 19 (193)
+|||||+
T Consensus 20 aSAsGYt 26 (146)
T 2lv4_A 20 ASASGYT 26 (146)
T ss_dssp CCCCCCC
T ss_pred cccCCCc
Confidence 5888886
No 9
>4gwm_A Meprin A subunit beta; mulidomain structure, hydrolase; HET: NAG BMA FUC MAN; 1.85A {Homo sapiens} PDB: 4gwn_A*
Probab=9.19 E-value=2.1e+02 Score=26.92 Aligned_cols=9 Identities=56% Similarity=0.970 Sum_probs=7.2
Q ss_pred eeeeccCCC
Q 029451 45 YQLVDQEPD 53 (193)
Q Consensus 45 y~lV~~e~d 53 (193)
..|+||.+|
T Consensus 477 ~~llDQ~pd 485 (592)
T 4gwm_A 477 MTLLDQNPD 485 (592)
T ss_dssp EEECCCCSS
T ss_pred EEEeCCCCC
Confidence 468899888
No 10
>3lb9_A Endo-1,4-beta-xylanase; BCX, permutation, glycosidase, xylan degradation, hydrolase; 3.00A {Bacillus circulans}
Probab=8.99 E-value=96 Score=25.68 Aligned_cols=11 Identities=45% Similarity=0.700 Sum_probs=8.1
Q ss_pred CeeeeeeCceeec
Q 029451 1 MLLAVEGGGFFSS 13 (193)
Q Consensus 1 MLlavEgGGfFSs 13 (193)
|+||+|| |+||
T Consensus 45 qi~atEG--y~ss 55 (182)
T 3lb9_A 45 QVMATEG--YQSS 55 (182)
T ss_dssp EEEEEEE--EEEE
T ss_pred EEEEEEe--Eccc
Confidence 5799995 6654
Done!