Query 029451
Match_columns 193
No_of_seqs 35 out of 37
Neff 2.6
Searched_HMMs 13730
Date Mon Mar 25 21:38:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029451.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/029451hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1zbsa2 c.55.1.5 (A:1-107) Hyp 44.3 4 0.00029 27.4 1.4 36 1-47 1-36 (107)
2 d1pcfa_ d.18.1.1 (A:) Transcri 27.1 12 0.00084 24.7 1.4 22 168-189 7-28 (66)
3 d2j0td1 b.40.3.1 (D:1-124) TIM 19.2 16 0.0011 25.1 0.8 31 13-44 67-107 (124)
4 d3brda3 b.42.7.1 (A:381-541) D 15.1 28 0.002 26.6 1.4 13 3-15 28-40 (161)
5 d2igta1 c.66.1.51 (A:1-309) Pu 9.8 40 0.0029 26.9 0.9 14 37-50 16-29 (309)
6 d1oq1a_ b.29.1.17 (A:) Hypothe 8.0 97 0.007 21.3 2.2 18 34-51 152-169 (223)
7 d1gsia_ c.37.1.1 (A:) Thymidyl 7.7 63 0.0046 21.8 1.1 8 1-8 1-8 (208)
8 d1myna_ g.3.7.4 (A:) Drosomyci 7.6 29 0.0021 21.6 -0.8 15 65-79 26-41 (44)
9 d2o9ca2 d.110.3.9 (A:4-130) Ba 7.4 44 0.0032 23.0 0.1 12 181-192 116-127 (127)
10 d1n0ua1 b.43.3.1 (A:344-481) E 7.3 85 0.0062 21.9 1.6 35 51-86 28-62 (138)
No 1
>d1zbsa2 c.55.1.5 (A:1-107) Hypothetical protein PG1100 {Porphyromonas gingivalis [TaxId: 837]}
Probab=44.25 E-value=4 Score=27.45 Aligned_cols=36 Identities=19% Similarity=0.172 Sum_probs=20.7
Q ss_pred CeeeeeeCceeeccCccccccceeeeeccCCCCCCCeeeccCcceee
Q 029451 1 MLLAVEGGGFFSSSASGYSKGLTLLFLGQKNDDDKPMRVSPWNQYQL 47 (193)
Q Consensus 1 MLlavEgGGfFSsSASGYs~GL~LLllG~k~e~~kpmrv~pWNqy~l 47 (193)
|.|.|+||| +|-.+.|.- ..+--.=.+--|-|-|.+
T Consensus 1 MilivDgGg---------TKT~~vl~d--~g~~i~~~~t~g~Np~~~ 36 (107)
T d1zbsa2 1 MILIGDSGS---------TKTDWCIAK--EGKSLGRFQTSGINPFQQ 36 (107)
T ss_dssp CEEEEEECS---------SEEEEEEEE--TTEEEEEEEEECCCTTTS
T ss_pred CEEEEEecc---------ccEEEEEEC--CCCeEEEEecCCcCcccC
Confidence 999999998 676665432 111011133467776644
No 2
>d1pcfa_ d.18.1.1 (A:) Transcriptional coactivator PC4 C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.10 E-value=12 Score=24.65 Aligned_cols=22 Identities=36% Similarity=0.401 Sum_probs=19.4
Q ss_pred cccceeeecccCCcceeeeecc
Q 029451 168 ERRKVQWTDTCGSELAEIREFE 189 (193)
Q Consensus 168 ~krkVqW~D~~GkeL~eirEfE 189 (193)
.+|+|.=.+.-|+.++.||||=
T Consensus 7 ~~rrvtV~~FkG~~~vdIReyY 28 (66)
T d1pcfa_ 7 KMRYVSVRDFKGKVLIDIREYW 28 (66)
T ss_dssp TTEEEEEEEETTEEEEEEEEEE
T ss_pred CcEEEEEEEECCcEEEEEEEEE
Confidence 4678899999999999999984
No 3
>d2j0td1 b.40.3.1 (D:1-124) TIMP-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.24 E-value=16 Score=25.05 Aligned_cols=31 Identities=32% Similarity=0.580 Sum_probs=22.6
Q ss_pred ccCcccc-----ccceeeeeccCCCCCCCee-----eccCcc
Q 029451 13 SSASGYS-----KGLTLLFLGQKNDDDKPMR-----VSPWNQ 44 (193)
Q Consensus 13 sSASGYs-----~GL~LLllG~k~e~~kpmr-----v~pWNq 44 (193)
+++=|+. .|-.+|++|+..+ .+.+- |.||+.
T Consensus 67 ~~~CG~~~~~l~~g~~YLI~G~~~~-g~l~v~~cs~v~~W~~ 107 (124)
T d2j0td1 67 ESVCGYFHRSHNRSEEFLIAGKLQD-GLLHITTCSFVAPWNS 107 (124)
T ss_dssp GGGTCCCCCCSCSSCEEEEEEEEET-TEEECCTTSEEEEGGG
T ss_pred cCccCccCcccCCCCeEEEEEEecC-CcEEEecCceEEEhHH
Confidence 4455775 4899999998765 66664 678875
No 4
>d3brda3 b.42.7.1 (A:381-541) DNA-binding protein LAG-1 (CSL) {Caenorhabditis elegans [TaxId: 6239]}
Probab=15.09 E-value=28 Score=26.60 Aligned_cols=13 Identities=54% Similarity=0.787 Sum_probs=10.1
Q ss_pred eeeeeCceeeccC
Q 029451 3 LAVEGGGFFSSSA 15 (193)
Q Consensus 3 lavEgGGfFSsSA 15 (193)
|.||||+|..++.
T Consensus 28 l~ve~~~f~as~~ 40 (161)
T d3brda3 28 LHVEGNAFHASST 40 (161)
T ss_dssp EEEETTEEEEESS
T ss_pred EEecCCeeEEeec
Confidence 6799999986553
No 5
>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=9.77 E-value=40 Score=26.92 Aligned_cols=14 Identities=21% Similarity=0.449 Sum_probs=11.9
Q ss_pred eeeccCcceeeecc
Q 029451 37 MRVSPWNQYQLVDQ 50 (193)
Q Consensus 37 mrv~pWNqy~lV~~ 50 (193)
|...+|.-|+|+|-
T Consensus 16 l~~~~w~dY~Lid~ 29 (309)
T d2igta1 16 LESSGAGDFHLIDS 29 (309)
T ss_dssp EEECCCTTEEEEEE
T ss_pred eccCCCCCeEEEEC
Confidence 56688999999984
No 6
>d1oq1a_ b.29.1.17 (A:) Hypothetical protein YesU {Bacillus subtilis [TaxId: 1423]}
Probab=7.95 E-value=97 Score=21.28 Aligned_cols=18 Identities=11% Similarity=0.202 Sum_probs=13.1
Q ss_pred CCCeeeccCcceeeeccC
Q 029451 34 DKPMRVSPWNQYQLVDQE 51 (193)
Q Consensus 34 ~kpmrv~pWNqy~lV~~e 51 (193)
.+.++.--||+|+++-+.
T Consensus 152 ~~~~~~geWn~~~I~v~G 169 (223)
T d1oq1a_ 152 PSPDDADSPYRMKLIKDK 169 (223)
T ss_dssp CCGGGCCSCEEEEEEEET
T ss_pred cccccCCCcEEEEEEEEC
Confidence 455666779999997654
No 7
>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=7.71 E-value=63 Score=21.83 Aligned_cols=8 Identities=63% Similarity=0.978 Sum_probs=6.4
Q ss_pred CeeeeeeC
Q 029451 1 MLLAVEGG 8 (193)
Q Consensus 1 MLlavEgG 8 (193)
||+|+||.
T Consensus 1 mlI~ieG~ 8 (208)
T d1gsia_ 1 MLIAIEGV 8 (208)
T ss_dssp CEEEEECS
T ss_pred CEEEEECC
Confidence 88888874
No 8
>d1myna_ g.3.7.4 (A:) Drosomycin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=7.60 E-value=29 Score=21.58 Aligned_cols=15 Identities=33% Similarity=0.698 Sum_probs=11.5
Q ss_pred hcccCCCC-cceeeec
Q 029451 65 KNRLSRGC-ASFVCFG 79 (193)
Q Consensus 65 kn~~s~gC-ASFVCFG 79 (193)
.-|+|+|| +|.-|.+
T Consensus 26 EGr~sGHCS~slkCWC 41 (44)
T d1myna_ 26 EGRSSGHCSPSLKCWC 41 (44)
T ss_dssp HTSSEEEECTTSCEEE
T ss_pred hCccccccCCccceee
Confidence 45788999 7777775
No 9
>d2o9ca2 d.110.3.9 (A:4-130) Bacteriophytochrome BphP {Deinococcus radiodurans [TaxId: 1299]}
Probab=7.44 E-value=44 Score=22.96 Aligned_cols=12 Identities=42% Similarity=0.493 Sum_probs=8.8
Q ss_pred cceeeeecccCC
Q 029451 181 ELAEIREFEPSS 192 (193)
Q Consensus 181 eL~eirEfEps~ 192 (193)
+=.=|.||||+|
T Consensus 116 ~~~lilElEP~e 127 (127)
T d2o9ca2 116 GELLILEFEPTE 127 (127)
T ss_dssp TTEEEEEEEEEC
T ss_pred CCEEEEEEecCC
Confidence 334688999976
No 10
>d1n0ua1 b.43.3.1 (A:344-481) Elongation factor 2 (eEF-2), domain II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=7.31 E-value=85 Score=21.85 Aligned_cols=35 Identities=34% Similarity=0.423 Sum_probs=24.8
Q ss_pred CCCCCCccccchhhhcccCCCCcceeeeccCCCCCC
Q 029451 51 EPDPDPDLQLASAAKNRLSRGCASFVCFGRASAGPD 86 (193)
Q Consensus 51 e~d~~~~~qlas~~kn~~s~gCASFVCFGr~SAgLe 86 (193)
+.||+-.|++-. .|-........|+||||--.|--
T Consensus 28 ~cd~~~Pl~~~v-~k~~~~~~~g~~~~~gRV~SGtl 62 (138)
T d1n0ua1 28 NCDPKADLMLYV-SKMVPTSDKGRFYAFGRVFAGTV 62 (138)
T ss_dssp TTCTTSSCEEEE-EEEEEBSSTTCEEEEEEEEESEE
T ss_pred ccCCCCCEEEEE-EeeccCCCCCEEEEEEEEEeceE
Confidence 445556666655 66677777888999999877643
Done!