Query 029452
Match_columns 193
No_of_seqs 119 out of 1042
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 13:09:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029452.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029452hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0547 TrpD Anthranilate phos 100.0 5.4E-58 1.2E-62 397.1 20.8 186 1-186 152-338 (338)
2 PLN02641 anthranilate phosphor 100.0 6.2E-57 1.3E-61 393.1 20.2 188 1-188 150-337 (343)
3 PRK07394 hypothetical protein; 100.0 2.2E-54 4.8E-59 377.3 21.1 178 1-181 162-341 (342)
4 PRK14607 bifunctional glutamin 100.0 2.1E-52 4.5E-57 383.6 20.7 187 1-187 343-531 (534)
5 PRK09522 bifunctional glutamin 100.0 2.1E-52 4.5E-57 382.6 19.3 181 1-182 348-529 (531)
6 TIGR01245 trpD anthranilate ph 100.0 7.5E-52 1.6E-56 360.3 20.3 182 1-182 146-329 (330)
7 PRK00188 trpD anthranilate pho 100.0 8.4E-51 1.8E-55 354.8 21.7 187 1-187 150-338 (339)
8 PF00591 Glycos_transf_3: Glyc 100.0 5.2E-50 1.1E-54 336.8 9.9 174 1-174 78-252 (252)
9 KOG1438 Anthranilate phosphori 100.0 2E-48 4.3E-53 324.4 14.8 186 1-186 180-371 (373)
10 PRK09071 hypothetical protein; 100.0 1.2E-46 2.6E-51 326.2 16.8 162 1-171 154-318 (323)
11 PRK08136 glycosyl transferase 100.0 2.1E-46 4.5E-51 323.8 15.0 157 1-162 156-316 (317)
12 PRK06078 pyrimidine-nucleoside 99.9 1.5E-24 3.3E-29 193.7 15.6 153 1-189 151-321 (434)
13 TIGR02644 Y_phosphoryl pyrimid 99.8 4.8E-18 1E-22 151.0 11.1 150 1-188 149-318 (405)
14 PRK04350 thymidine phosphoryla 99.7 1.3E-17 2.7E-22 151.0 12.8 151 1-187 226-395 (490)
15 TIGR02645 ARCH_P_rylase putati 98.7 4.2E-07 9.2E-12 82.9 15.0 152 3-187 235-400 (493)
16 PRK05820 deoA thymidine phosph 98.6 2.3E-06 5E-11 77.4 14.9 67 122-188 256-324 (440)
17 TIGR03327 AMP_phos AMP phospho 98.4 1.1E-05 2.3E-10 74.0 14.5 153 3-188 236-401 (500)
18 TIGR02643 T_phosphoryl thymidi 97.7 0.00024 5.1E-09 64.4 9.0 66 123-188 256-323 (437)
19 COG0213 DeoA Thymidine phospho 97.5 0.00059 1.3E-08 61.1 8.4 68 122-189 254-322 (435)
20 PF08844 DUF1815: Domain of un 68.3 31 0.00067 25.0 6.4 51 52-107 20-70 (105)
21 PRK02308 uvsE putative UV dama 59.0 9 0.0002 33.2 2.8 66 4-71 87-154 (303)
22 PF02641 DUF190: Uncharacteriz 59.0 18 0.00039 26.0 4.1 31 46-76 17-48 (101)
23 PF11501 Nsp1: Non structural 55.5 11 0.00025 27.4 2.4 23 151-173 17-39 (115)
24 PF10932 DUF2783: Protein of u 39.5 1.1E+02 0.0024 20.2 5.7 48 117-166 9-59 (60)
25 PF07287 DUF1446: Protein of u 39.1 21 0.00047 31.8 2.1 62 2-77 52-115 (362)
26 PRK12791 flbT flagellar biosyn 36.3 1.9E+02 0.0042 22.0 6.6 56 125-183 60-116 (131)
27 PF15516 BpuSI_N: BpuSI N-term 35.9 33 0.00071 26.6 2.3 34 43-76 8-44 (159)
28 PF14207 DpnD-PcfM: DpnD/PcfM- 35.8 43 0.00092 21.1 2.5 20 153-172 17-36 (48)
29 COG2518 Pcm Protein-L-isoaspar 34.6 1.1E+02 0.0023 25.4 5.3 42 41-82 96-138 (209)
30 TIGR01437 selA_rel uncharacter 33.7 33 0.00072 30.0 2.4 56 16-71 1-68 (363)
31 COG1209 RfbA dTDP-glucose pyro 32.4 93 0.002 26.9 4.8 65 38-106 21-87 (286)
32 PHA01794 hypothetical protein 32.3 88 0.0019 23.9 4.1 62 122-183 24-100 (134)
33 PF02885 Glycos_trans_3N: Glyc 32.2 1.4E+02 0.0031 19.3 5.7 50 117-171 16-65 (66)
34 PF13486 Dehalogenase: Reducti 32.1 38 0.00083 29.4 2.5 27 98-130 126-152 (308)
35 PF12688 TPR_5: Tetratrico pep 32.0 1.7E+02 0.0037 21.7 5.7 54 116-172 52-106 (120)
36 PF03681 UPF0150: Uncharacteri 31.3 53 0.0011 19.9 2.4 14 155-168 29-42 (48)
37 COG0336 TrmD tRNA-(guanine-N1) 30.7 54 0.0012 27.6 3.0 54 25-80 67-122 (240)
38 PF01364 Peptidase_C25: Peptid 30.3 60 0.0013 28.6 3.5 67 3-74 6-75 (378)
39 COG1712 Predicted dinucleotide 29.7 86 0.0019 26.6 4.1 90 46-153 96-188 (255)
40 PF14852 Fis1_TPR_N: Fis1 N-te 29.3 36 0.00079 19.8 1.3 31 141-171 4-34 (35)
41 PF07521 RMMBL: RNA-metabolisi 29.2 41 0.00089 20.2 1.6 22 51-72 20-41 (43)
42 PF13723 Ketoacyl-synt_2: Beta 26.5 2.6E+02 0.0057 23.1 6.4 56 116-171 62-131 (218)
43 PRK15179 Vi polysaccharide bio 25.3 1.2E+02 0.0026 29.5 4.8 62 116-181 168-229 (694)
44 KOG1116 Sphingosine kinase, in 25.2 1.1E+02 0.0024 29.1 4.4 51 24-74 198-248 (579)
45 KOG2278 RNA:NAD 2'-phosphotran 25.2 99 0.0021 25.1 3.5 63 28-90 95-160 (207)
46 TIGR00629 uvde UV damage endon 24.4 62 0.0013 28.4 2.4 58 4-70 90-160 (312)
47 PF03851 UvdE: UV-endonuclease 23.8 56 0.0012 28.1 2.0 58 5-71 84-152 (275)
48 COG0106 HisA Phosphoribosylfor 23.7 1.2E+02 0.0027 25.6 4.0 43 21-66 83-125 (241)
49 PF00538 Linker_histone: linke 23.7 68 0.0015 21.6 2.1 19 46-64 1-19 (77)
50 PF13041 PPR_2: PPR repeat fam 23.5 1.7E+02 0.0037 17.3 4.2 33 138-172 2-34 (50)
51 KOG4435 Predicted lipid kinase 23.1 93 0.002 28.6 3.3 108 20-134 74-188 (535)
52 PF07378 FlbT: Flagellar prote 22.6 3.4E+02 0.0074 20.4 7.2 66 117-183 49-117 (126)
53 PF04720 DUF506: Protein of un 22.1 4.4E+02 0.0096 21.8 6.9 52 47-100 86-144 (218)
54 PRK00304 hypothetical protein; 21.7 67 0.0015 22.2 1.7 23 152-174 29-51 (75)
55 PF14561 TPR_20: Tetratricopep 21.1 2.9E+02 0.0063 19.2 5.0 12 157-168 38-49 (90)
56 PRK00794 flbT flagellar biosyn 21.0 3.8E+02 0.0083 20.4 7.3 66 117-183 51-119 (132)
57 COG4917 EutP Ethanolamine util 20.6 1.2E+02 0.0026 23.5 3.0 36 42-77 93-137 (148)
58 COG2987 HutU Urocanate hydrata 20.6 62 0.0013 30.1 1.7 132 49-182 63-253 (561)
59 PRK00907 hypothetical protein; 20.5 1.3E+02 0.0029 21.4 3.1 32 31-62 10-42 (92)
60 TIGR00676 fadh2 5,10-methylene 20.4 1.4E+02 0.0031 25.1 3.9 48 12-72 49-96 (272)
61 PF07189 SF3b10: Splicing fact 20.4 56 0.0012 22.8 1.1 19 21-39 59-77 (79)
62 PF06794 UPF0270: Uncharacteri 20.4 57 0.0012 22.2 1.1 21 154-174 32-52 (70)
63 cd04443 DEP_GPR155 DEP (Dishev 20.1 1.5E+02 0.0032 20.6 3.3 20 152-171 44-63 (83)
64 KOG1840 Kinesin light chain [C 20.0 4.8E+02 0.011 24.5 7.5 55 129-183 274-334 (508)
No 1
>COG0547 TrpD Anthranilate phosphoribosyltransferase [Amino acid transport and metabolism]
Probab=100.00 E-value=5.4e-58 Score=397.11 Aligned_cols=186 Identities=49% Similarity=0.806 Sum_probs=182.4
Q ss_pred CCCCccCHHhhccHHHhhhCCCCCchHhhhhccCCCCCCceEEeecChhHHHHHHHHHHHcCCceEEEEee-CCccccCC
Q 029452 1 MMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHS-EGLDEMSP 79 (193)
Q Consensus 1 l~ap~~~P~~~~l~~~R~~lG~RT~fN~lgpLlNP~~~~~~v~Gv~h~~~~~~~a~~~~~lg~~~a~vv~G-eG~dE~s~ 79 (193)
||||.|||+|++++|+|++||+||+||+||||+||+++++||+|||||+|.++++++++.+|.++++|||| ||+||++|
T Consensus 152 lfAp~~hp~~k~v~~vR~~LG~RTifN~LGPL~NPa~~~~qliGV~~p~~~~~~A~~l~~LG~~ralvV~G~~GlDE~~~ 231 (338)
T COG0547 152 LFAPAYHPAMKHVAPVRKELGVRTIFNLLGPLLNPARAKLQLIGVYHPELVELLAEALRLLGVERALVVHGLEGLDEVTP 231 (338)
T ss_pred EEccccCHHHHHHHHHHHHcCCCchHHhhccccCCCCCCceEEEEeCHHHHHHHHHHHHHhCcceEEEEECCCCcccccC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999 89999999
Q ss_pred CCCeEEEEEeCCeEEEEEECCCCCCCCCCCCCCcCCCChHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHHhcccCCHHH
Q 029452 80 LGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERGAIADALILNAAAALLVSCKVNTLAE 159 (193)
Q Consensus 80 ~~~t~v~~~~~g~i~~~~~~p~~~Gl~~~~~~~l~~~~~~~~a~~~~~vL~G~~~~~~~~v~lNaA~~L~~~g~~~~i~~ 159 (193)
+++|.|+++++|++++|+++|+|||++++++++|+++||++|++++++||+|+.++.+|+|++|||++||++|+++|++|
T Consensus 232 ~~~t~v~~l~~g~i~~~~l~pe~~Gl~~~~~~~l~~~~~~ena~~~~~vL~G~~~~~~d~v~~Naa~~L~~~g~a~~l~e 311 (338)
T COG0547 232 TGTTLVAELKDGEIREYTLTPEDFGLERAPLEDLPGGDPEENAEILRAVLAGEEGPARDAVALNAAAALYAAGKAESLKE 311 (338)
T ss_pred CCCceEEEEcCCceEEEEeCHHhcCCCCCchhhcCCCCHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHHcCccCCHHH
Confidence 99999999999999999999999999999999999999999999999999999889999999999999999999999999
Q ss_pred HHHHHHHHHHccHHHHHHHHHHHHhcC
Q 029452 160 GVALAREIQLSGKALNTLDLWIEVSKG 186 (193)
Q Consensus 160 g~~~A~e~i~sG~a~~~l~~~~~~~~~ 186 (193)
|+++|+++|+||+|+++|++|+.++++
T Consensus 312 g~~~A~~~i~sG~a~~~l~~l~~~~~~ 338 (338)
T COG0547 312 GIALALEAIDSGAALEKLEELVAFSKS 338 (338)
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHhcC
Confidence 999999999999999999999988763
No 2
>PLN02641 anthranilate phosphoribosyltransferase
Probab=100.00 E-value=6.2e-57 Score=393.07 Aligned_cols=188 Identities=79% Similarity=1.168 Sum_probs=183.5
Q ss_pred CCCCccCHHhhccHHHhhhCCCCCchHhhhhccCCCCCCceEEeecChhHHHHHHHHHHHcCCceEEEEeeCCccccCCC
Q 029452 1 MMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHSEGLDEMSPL 80 (193)
Q Consensus 1 l~ap~~~P~~~~l~~~R~~lG~RT~fN~lgpLlNP~~~~~~v~Gv~h~~~~~~~a~~~~~lg~~~a~vv~GeG~dE~s~~ 80 (193)
||||.|||+|++++++|++||+||+||+||||+||+++++||+|||||+|.++|+++++.+|.++++||||+|+||+||.
T Consensus 150 l~a~~~hPa~~~~~~~R~~LG~RT~fN~lgpL~NPa~~~~~v~GV~~~~~~~~~a~al~~lG~~~alVv~G~G~DEis~~ 229 (343)
T PLN02641 150 MMAPKYHPAMKIVAPVRKKLKVKTVFNILGPMLNPARVPHAVVGVYHESLVEKMAKALQRFGMKRALVVHSEGLDEMSPL 229 (343)
T ss_pred EechhhCHHHHHHHHHHHHhCCCcHHHHHHHhcCCCCCCceEEeeeCHHHHHHHHHHHHHcCCCeEEEEecCCCCccccC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEeCCeEEEEEECCCCCCCCCCCCCCcCCCChHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHHhcccCCHHHH
Q 029452 81 GPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERGAIADALILNAAAALLVSCKVNTLAEG 160 (193)
Q Consensus 81 ~~t~v~~~~~g~i~~~~~~p~~~Gl~~~~~~~l~~~~~~~~a~~~~~vL~G~~~~~~~~v~lNaA~~L~~~g~~~~i~~g 160 (193)
++|+|+++++|++.+++|+|+|||+++++++++.++|+++|++++++||+|+.++++|+|++|||++||++|+++|++||
T Consensus 230 g~t~v~~~~~g~i~~~~~~p~d~Gl~~~~~~~l~~~~~~~na~~~~~vL~G~~~~~~d~v~lNaa~~L~~~g~~~sl~eg 309 (343)
T PLN02641 230 GPGDVLEVTPEKIEEFSFDPLDFGIPRCTLEDLRGGDPDYNAKVLRDVLSGEKGAIADALILNAAAALLVSGLAKTLAEG 309 (343)
T ss_pred cceEEEEEeCCceEEEEeCHHHcCCCcCCHHhcCCCCHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999998889999999999999999999999999
Q ss_pred HHHHHHHHHccHHHHHHHHHHHHhcCCC
Q 029452 161 VALAREIQLSGKALNTLDLWIEVSKGAP 188 (193)
Q Consensus 161 ~~~A~e~i~sG~a~~~l~~~~~~~~~~~ 188 (193)
+++|+++|+||+|+++|++|++++++..
T Consensus 310 ~~~A~~~i~sG~a~~~l~~~~~~~~~~~ 337 (343)
T PLN02641 310 VALARETQESGKAIKTLDSWIKISQELK 337 (343)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999887653
No 3
>PRK07394 hypothetical protein; Provisional
Probab=100.00 E-value=2.2e-54 Score=377.34 Aligned_cols=178 Identities=24% Similarity=0.278 Sum_probs=172.4
Q ss_pred CCCCccCHHhhccHHHhhhCCCCCchHhhhhccCC-CCCCceEEeecChhHHHHHHHHHHHcCCceEEEEee-CCccccC
Q 029452 1 MMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNP-ACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHS-EGLDEMS 78 (193)
Q Consensus 1 l~ap~~~P~~~~l~~~R~~lG~RT~fN~lgpLlNP-~~~~~~v~Gv~h~~~~~~~a~~~~~lg~~~a~vv~G-eG~dE~s 78 (193)
||||.|||+|++++++|++||+||+||+||||+|| +++++||+|||||+|.++|+++++.+|.++++|||| ||+||++
T Consensus 162 l~ap~~hP~m~~~~~vR~~Lg~RT~fN~lgpL~NP~a~~~~~v~Gv~~~~~~~~~a~~l~~lg~~~~~vv~G~~G~dE~s 241 (342)
T PRK07394 162 IYQPDHFPLAESLIPYRDEIGKRPPLATLELIWTPHQGDHHLVSGFVHPPTEARAWEALELRGETNFTTVKGLEGSCDLP 241 (342)
T ss_pred eechhhCHHHHHHHHHHHHhCCCCHHHHHHHhcCCCCCCCceEEEeeCHHHHHHHHHHHHHcCCCeEEEEEcCCCceecc
Confidence 69999999999999999999999999999999999 689999999999999999999999999999999999 9999999
Q ss_pred CCCCeEEEEEeCCeEEEEEECCCCCCCCCCCCCCcCCCChHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHHhcccCCHH
Q 029452 79 PLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERGAIADALILNAAAALLVSCKVNTLA 158 (193)
Q Consensus 79 ~~~~t~v~~~~~g~i~~~~~~p~~~Gl~~~~~~~l~~~~~~~~a~~~~~vL~G~~~~~~~~v~lNaA~~L~~~g~~~~i~ 158 (193)
++++|.++++++|++++++|+|+|||++++ +++++|+++|++++++||+|++++.+|+|++|||++||++|+++|++
T Consensus 242 ~~~~t~v~~~~~g~i~~~~i~p~d~G~~~~---~l~~~~~~~na~~~~~vl~G~~~~~~~~v~lNaa~~L~~~g~~~s~~ 318 (342)
T PRK07394 242 ISRTAIIGRVQNGHFERLILHPRDYGCGGK---DVPWESTEEWLEQAQAALNGEPGPLTQALIWNGGFYLWRAGISSSLE 318 (342)
T ss_pred CCCCeEEEEEcCCeEEEEEECHHHcCCCcc---cCCCCCHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHHcCCCCCHH
Confidence 999999999999999999999999999875 45789999999999999999988889999999999999999999999
Q ss_pred HHHHHHHHHHHccHHHHHHHHHH
Q 029452 159 EGVALAREIQLSGKALNTLDLWI 181 (193)
Q Consensus 159 ~g~~~A~e~i~sG~a~~~l~~~~ 181 (193)
||+++|+++|+||+|+++|++|+
T Consensus 319 eg~~~A~~~i~sG~a~~~l~~~~ 341 (342)
T PRK07394 319 EGIEKAEELLNSGKALQKLQQLI 341 (342)
T ss_pred HHHHHHHHHHHcCHHHHHHHHHh
Confidence 99999999999999999999996
No 4
>PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=100.00 E-value=2.1e-52 Score=383.56 Aligned_cols=187 Identities=39% Similarity=0.671 Sum_probs=182.1
Q ss_pred CCCCccCHHhhccHHHhhhCCCCCchHhhhhccCCCCCCceEEeecChhHHHHHHHHHHHcCCceEEEEee-CCccccCC
Q 029452 1 MMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHS-EGLDEMSP 79 (193)
Q Consensus 1 l~ap~~~P~~~~l~~~R~~lG~RT~fN~lgpLlNP~~~~~~v~Gv~h~~~~~~~a~~~~~lg~~~a~vv~G-eG~dE~s~ 79 (193)
||||.|||+|++++++|++||+||+||++|||+||+++++||+|||||+|.++|+++++.+|.++++|||| ||+||+||
T Consensus 343 l~ap~~~p~l~~~~~~R~~Lg~rTifN~lgpL~NP~~~~~~v~Gv~~~~~~~~~a~~l~~lg~~~~~vv~G~~G~dE~s~ 422 (534)
T PRK14607 343 LFAPLFHPAMKHAAPARRELGIRTAFNLLGPLTNPARVKYQIVGVFDPSYAEPLAQALQRLGTERAMVVSGIDGYDEIST 422 (534)
T ss_pred eeccccCHHHHHHHHHHHHhCCCcHHHhHHhccCCCCCCcEEEeeCCHHHHHHHHHHHHHcCCCEEEEEeCCCCCccccC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred CCCeEEEEEeCCeEEEEEECCCCCCCCCCCCCCcCCCChHHHHHHHHHHHCCCc-chHHHHHHHHHHHHHHHhcccCCHH
Q 029452 80 LGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGER-GAIADALILNAAAALLVSCKVNTLA 158 (193)
Q Consensus 80 ~~~t~v~~~~~g~i~~~~~~p~~~Gl~~~~~~~l~~~~~~~~a~~~~~vL~G~~-~~~~~~v~lNaA~~L~~~g~~~~i~ 158 (193)
+++|+|+++++|++.+++|+|+|||+++.++++++++|+++|+++++++|+|+. ++++|+|++|||++||++|+++|++
T Consensus 423 ~~~t~v~~~~~g~i~~~~i~p~~~Gl~~~~~~~~~~~~~~~na~~~~~vl~G~~~~~~~~~v~lnaA~~L~~~g~~~s~~ 502 (534)
T PRK14607 423 CGPTQILELEDGEIVTYTFDPEELGLKRVDPEELKGGDPQENYRLAEDVLKGEPRRPQRDAVALNAGAALYLVGEADSIK 502 (534)
T ss_pred CCceEEEEEcCCEEEEEEEcHHHCCCCCCCHHHcCCCCHHHHHHHHHHHHCCCCCChHHHHHHHHHHHHHHHcCCCCCHH
Confidence 999999999999999999999999999999999999999999999999999995 7899999999999999999999999
Q ss_pred HHHHHHHHHHHccHHHHHHHHHHHHhcCC
Q 029452 159 EGVALAREIQLSGKALNTLDLWIEVSKGA 187 (193)
Q Consensus 159 ~g~~~A~e~i~sG~a~~~l~~~~~~~~~~ 187 (193)
||+++|+++|+||+|+++|++|++.+++.
T Consensus 503 eg~~~a~~~i~sG~a~~~l~~~~~~~~~~ 531 (534)
T PRK14607 503 EGVGKALDLIDDGRAYKKLEEVMDLSKTL 531 (534)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999988653
No 5
>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=100.00 E-value=2.1e-52 Score=382.60 Aligned_cols=181 Identities=34% Similarity=0.615 Sum_probs=175.8
Q ss_pred CCCCccCHHhhccHHHhhhCCCCCchHhhhhccCCCCCCceEEeecChhHHHHHHHHHHHcCCceEEEEeeCCccccCCC
Q 029452 1 MMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHSEGLDEMSPL 80 (193)
Q Consensus 1 l~ap~~~P~~~~l~~~R~~lG~RT~fN~lgpLlNP~~~~~~v~Gv~h~~~~~~~a~~~~~lg~~~a~vv~GeG~dE~s~~ 80 (193)
||||.|||+|++++++|++||+||+||+||||+||+++++||+|||||+|.++|+++++.+|.++++||||+|+||+|++
T Consensus 348 l~ap~~hpam~~~~~~R~~Lg~rT~fN~lgpL~NPa~~~~~v~Gv~~~~~~~~~a~~l~~lG~~~~~vv~G~G~DEis~~ 427 (531)
T PRK09522 348 LFAPKYHTGFRHAMPVRQQLKTRTLFNVLGPLINPAHPPLALIGVYSPELVLPIAETLRVLGYQRAAVVHSGGMDEVSLH 427 (531)
T ss_pred EEhhHhCHHHHHHHHHHHHhCCCcHHHHHHHhcCCCCCCcEEEEeeCHHHHHHHHHHHHHhCCCeEEEEECCCccccCCC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEeCCeEEEEEECCCCCCCCCCCCCCcCCCChHHHHHHHHHHHCCCc-chHHHHHHHHHHHHHHHhcccCCHHH
Q 029452 81 GPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGER-GAIADALILNAAAALLVSCKVNTLAE 159 (193)
Q Consensus 81 ~~t~v~~~~~g~i~~~~~~p~~~Gl~~~~~~~l~~~~~~~~a~~~~~vL~G~~-~~~~~~v~lNaA~~L~~~g~~~~i~~ 159 (193)
++|+|+++++|++++++|+|+|||+++.++++++++|+++|++++++||+|+. .+..|+|++|||++||+.|. +|+++
T Consensus 428 ~~t~v~~~~~g~i~~~~~~P~d~Gl~~~~~~~i~g~~~~~na~~~~~vl~G~~~~~~~~~v~~naa~~l~~~g~-~~l~~ 506 (531)
T PRK09522 428 APTIVAELHDGEIKSYQLTAEDFGLTPYHQEQLAGGTPEENRDILTRLLQGKGDAAHEAAVAANVAMLMRLHGH-EDLQA 506 (531)
T ss_pred CceEEEEEcCCeEEEEEECHHHcCCCCCCHHHhcCCCHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHHHcCC-CCHHH
Confidence 99999999999999999999999999999999999999999999999999995 45679999999999999996 99999
Q ss_pred HHHHHHHHHHccHHHHHHHHHHH
Q 029452 160 GVALAREIQLSGKALNTLDLWIE 182 (193)
Q Consensus 160 g~~~A~e~i~sG~a~~~l~~~~~ 182 (193)
|+++|+++|+||+|+++|++|++
T Consensus 507 g~~~a~~~i~sG~a~~~l~~l~~ 529 (531)
T PRK09522 507 NAQTVLEVLRSGSAYDRVTALAA 529 (531)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHh
Confidence 99999999999999999999975
No 6
>TIGR01245 trpD anthranilate phosphoribosyltransferase. In many widely different species, including E. coli, Thermotoga maritima, and Archaeoglobus fulgidus, this enzymatic domain (anthranilate phosphoribosyltransferase) is found C-terminal to glutamine amidotransferase; the fusion protein is designated anthranilate synthase component II (EC 4.1.3.27)
Probab=100.00 E-value=7.5e-52 Score=360.26 Aligned_cols=182 Identities=49% Similarity=0.807 Sum_probs=177.7
Q ss_pred CCCCccCHHhhccHHHhhhCCCCCchHhhhhccCCCCCCceEEeecChhHHHHHHHHHHHcCCceEEEEee-CCccccCC
Q 029452 1 MMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHS-EGLDEMSP 79 (193)
Q Consensus 1 l~ap~~~P~~~~l~~~R~~lG~RT~fN~lgpLlNP~~~~~~v~Gv~h~~~~~~~a~~~~~lg~~~a~vv~G-eG~dE~s~ 79 (193)
+|+|.|||+|++++++|++||+||+||++|||+||++++++|+|||||+|.++|+++++.+|.++++|||| ||+||+||
T Consensus 146 ~~~~~~~P~~~~l~~lR~~lg~rT~~N~lgpL~NP~~~~~~v~Gv~~~~~~~~~a~~~~~lg~~~~~vv~G~~G~dE~s~ 225 (330)
T TIGR01245 146 LFAPLYHPAMKHVAPVRRELGVRTVFNLLGPLTNPARPKYQVIGVYDPDLVEVMAEALKNLGVKRALVVHGDDGLDEISL 225 (330)
T ss_pred eechhhCHHHHHHHHHHHHhCCCCHHHHHHHhcCCCCCCCEEEcccCHHHHHHHHHHHHHhCCCeEEEEECCCCceeecC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred CCCeEEEEEeCCeEEEEEECCCCCCCCCCCCCCcCCCChHHHHHHHHHHHCCCc-chHHHHHHHHHHHHHHHhcccCCHH
Q 029452 80 LGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGER-GAIADALILNAAAALLVSCKVNTLA 158 (193)
Q Consensus 80 ~~~t~v~~~~~g~i~~~~~~p~~~Gl~~~~~~~l~~~~~~~~a~~~~~vL~G~~-~~~~~~v~lNaA~~L~~~g~~~~i~ 158 (193)
+++|+|+++++|++.+++|+|+|||++..+++++.++|+++|+++++++|+|+. +++.|+|++|+|++||++|+++|++
T Consensus 226 ~~~t~v~~~~~g~~~~~~i~p~~~g~~~~~~~~~~~~~~~~~a~~~~~~l~G~~~~~~~~~v~lnaA~~L~~~g~~~s~~ 305 (330)
T TIGR01245 226 TGPTTVAELKDGEIREYTLDPEDFGLPRAPLEELAGGSPEENAEILRDILRGKGSGAKRDIVALNAAAALYVAGRASDLK 305 (330)
T ss_pred CCcEEEEEEECCEEEEEeCCHHHcCCCcCCHhhcCCCCHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHHHcCCCCCHH
Confidence 999999999999999999999999999988899999999999999999999995 7899999999999999999999999
Q ss_pred HHHHHHHHHHHccHHHHHHHHHHH
Q 029452 159 EGVALAREIQLSGKALNTLDLWIE 182 (193)
Q Consensus 159 ~g~~~A~e~i~sG~a~~~l~~~~~ 182 (193)
+|+++|+++|+||+|+++|++|++
T Consensus 306 e~~~~a~~~i~sG~a~~~l~~~~~ 329 (330)
T TIGR01245 306 EGVELALEAIDSGAAAEKLEELVA 329 (330)
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHh
Confidence 999999999999999999999986
No 7
>PRK00188 trpD anthranilate phosphoribosyltransferase; Provisional
Probab=100.00 E-value=8.4e-51 Score=354.84 Aligned_cols=187 Identities=48% Similarity=0.790 Sum_probs=180.5
Q ss_pred CCCCccCHHhhccHHHhhhCCCCCchHhhhhccCCCCCCceEEeecChhHHHHHHHHHHHcCCceEEEEee-CCccccCC
Q 029452 1 MMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHS-EGLDEMSP 79 (193)
Q Consensus 1 l~ap~~~P~~~~l~~~R~~lG~RT~fN~lgpLlNP~~~~~~v~Gv~h~~~~~~~a~~~~~lg~~~a~vv~G-eG~dE~s~ 79 (193)
+|+|.|||+|++++++|++||+||+|||+|||+||++++++|+|||||+|.++|+++++.+|.++++|||| ||+||++|
T Consensus 150 l~a~~~~P~l~~l~~lR~~Lg~Rt~fN~l~~L~NP~~~~~~v~Gv~h~~~~~~~a~~l~~lg~~~~~vv~G~~G~dE~~~ 229 (339)
T PRK00188 150 LFAPLYHPAMKHVAPVRKELGIRTIFNLLGPLTNPARPKRQLIGVYSPDLLEPMAEVLKRLGSKRALVVHGSDGLDEISL 229 (339)
T ss_pred eeCcccCHHHHHHHHHHHHhCCCCHHHHHHHhcCCCCCCCEEEeecCHHHHHHHHHHHHHhCCCeEEEEECCCCceeecC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred CCCeEEEEEeCCeEEEEEECCCCCCCCCCCCCCcCCCChHHHHHHHHHHHCCC-cchHHHHHHHHHHHHHHHhcccCCHH
Q 029452 80 LGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGE-RGAIADALILNAAAALLVSCKVNTLA 158 (193)
Q Consensus 80 ~~~t~v~~~~~g~i~~~~~~p~~~Gl~~~~~~~l~~~~~~~~a~~~~~vL~G~-~~~~~~~v~lNaA~~L~~~g~~~~i~ 158 (193)
+++|+|+++++|++.++.|+|++||++..+.+++.++|+++|+++++++|+|+ .+++.+.|++|+|++||++|+++|++
T Consensus 230 ~~~t~v~~~~~g~~~~~~i~p~~~Gl~~~~~~~~~~~~~~~~a~~~~~vl~G~~~~~~~~~v~lnaA~~L~~~g~~~s~~ 309 (339)
T PRK00188 230 TGPTTVAELKDGEIREYTLTPEDFGLPRAPLEDLRGGDPEENAAILRAVLQGKGPGAARDAVLLNAAAALYVAGKADDLK 309 (339)
T ss_pred CCCEEEEEEcCCEEEEEEECHHHcCCCcCCHHhcCCCCHHHHHHHHHHHHCCCCCCchHHHHHHHHHHHHHHcCCCCCHH
Confidence 99999999999999999999999999998888888899999999999999996 57899999999999999999999999
Q ss_pred HHHHHHHHHHHccHHHHHHHHHHHHhcCC
Q 029452 159 EGVALAREIQLSGKALNTLDLWIEVSKGA 187 (193)
Q Consensus 159 ~g~~~A~e~i~sG~a~~~l~~~~~~~~~~ 187 (193)
||+++|+++|+||+++++|++|++.+++.
T Consensus 310 e~~~~A~~~i~sG~a~~~l~~~~~~~~~~ 338 (339)
T PRK00188 310 EGVELAREAIDSGAALAKLEELVAFSQEL 338 (339)
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHhccC
Confidence 99999999999999999999999987753
No 8
>PF00591 Glycos_transf_3: Glycosyl transferase family, a/b domain Prosite entry for Thymidine and pyrimidine-nucleoside phosphorylases; InterPro: IPR000312 The glycosyl transferase family includes anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase (2.4.2.2 from EC) catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism.; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1V8G_B 2ELC_B 2BPQ_A 1ZVW_B 3QR9_B 3H5Q_A 1KHD_A 1KGZ_B 1AZY_A 1OTP_A ....
Probab=100.00 E-value=5.2e-50 Score=336.85 Aligned_cols=174 Identities=48% Similarity=0.797 Sum_probs=165.7
Q ss_pred CCCCccCHHhhccHHHhhhCCCCCchHhhhhccCCCCCCceEEeecChhHHHHHHHHHHHcCCceEEEEeeCCccccCCC
Q 029452 1 MMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHSEGLDEMSPL 80 (193)
Q Consensus 1 l~ap~~~P~~~~l~~~R~~lG~RT~fN~lgpLlNP~~~~~~v~Gv~h~~~~~~~a~~~~~lg~~~a~vv~GeG~dE~s~~ 80 (193)
||+|.|||+|++++++|++||+||+||++|||+||+++++||+|||||+|.+.|+++++.+|+++++||||||+||+++.
T Consensus 78 l~~~~~~p~~~~l~~~R~~lg~rT~~N~l~pL~nP~~~~~~v~Gv~~~~~~~~~~~~~~~lg~~~~~vv~G~G~dE~~~~ 157 (252)
T PF00591_consen 78 LFAPNFHPALKRLAPVRRELGIRTVFNTLGPLLNPANAKHQVIGVFHPEYAELMAEALRDLGYGRALVVKGEGSDEISPL 157 (252)
T ss_dssp EEHHHHSGGHHHHHHHHHHHTS--SHHHHGHHHHTT--SEEEEEHSCHHHHHHHHHHHCCETESEEEEEEETTBSSHHHS
T ss_pred ecchhcCcchHHHHHHHHHcCCCCHHHhhhhhcCCcCCCcEEEEEeCHHHHHHHHHHHHhCCCceEEEEecCCcchhhhc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEeCCeEEEEEECCCCCCCCCCCCCCcCCCChHHHHHHHHHHHCCCcchH-HHHHHHHHHHHHHHhcccCCHHH
Q 029452 81 GPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERGAI-ADALILNAAAALLVSCKVNTLAE 159 (193)
Q Consensus 81 ~~t~v~~~~~g~i~~~~~~p~~~Gl~~~~~~~l~~~~~~~~a~~~~~vL~G~~~~~-~~~v~lNaA~~L~~~g~~~~i~~ 159 (193)
++|.|+++++|++.++.|+|+|||+++.+.+++.++|+++|+++++++|+|+.++. +|+|++|||++||++|++.|++|
T Consensus 158 ~~t~v~~~~~g~~~~~~l~p~d~gl~~~~~~~l~~~~~~e~~~~~~~~L~G~~~~~~~d~v~~nAa~~L~~~g~~~s~~e 237 (252)
T PF00591_consen 158 GPTRVYELKNGEITEYELDPEDFGLKRAPLEELEGGDPEENARILRAVLAGEEDPAHRDAVLLNAAAALYVAGKASSLEE 237 (252)
T ss_dssp SHEEEEEHHTTEEEEEEEEEGCCTSSSEEGGGGBHSSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSSSSHHH
T ss_pred cCcEEEeecCCceeEEecCHhhcCCCCCChHHhcCCCHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHcCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999998665 99999999999999999999999
Q ss_pred HHHHHHHHHHccHHH
Q 029452 160 GVALAREIQLSGKAL 174 (193)
Q Consensus 160 g~~~A~e~i~sG~a~ 174 (193)
|+++|+++|+||+|+
T Consensus 238 g~~~a~e~i~sG~Al 252 (252)
T PF00591_consen 238 GVEKAREAIDSGKAL 252 (252)
T ss_dssp HHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHcCCCC
Confidence 999999999999996
No 9
>KOG1438 consensus Anthranilate phosphoribosyltransferase [Amino acid transport and metabolism]
Probab=100.00 E-value=2e-48 Score=324.43 Aligned_cols=186 Identities=61% Similarity=0.935 Sum_probs=176.8
Q ss_pred CCCCccCHHhhccHHHhhhCCCCCchHhhhhccCCCCCCceEEeecChhHHHHHHHHHHHcCCceEEEEee-CCccccCC
Q 029452 1 MMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHS-EGLDEMSP 79 (193)
Q Consensus 1 l~ap~~~P~~~~l~~~R~~lG~RT~fN~lgpLlNP~~~~~~v~Gv~h~~~~~~~a~~~~~lg~~~a~vv~G-eG~dE~s~ 79 (193)
||||.|||.|+++.|+||+||++|+||+||||+||++..++++||||+++.+.|+++++++|..+..+|.| +|+||+||
T Consensus 180 l~aPm~Hp~mk~V~piRK~LgipTvFNilGPlLnP~~v~~rivGVy~k~L~~~~AKal~~~g~gs~~~V~g~~GLDE~SP 259 (373)
T KOG1438|consen 180 LMAPMYHPAMKIVGPIRKKLGIPTVFNILGPLLNPARVSYRIVGVYHKDLVVKMAKALQRFGMGSRALVVGSCGLDEMSP 259 (373)
T ss_pred EechhhcccccchhHHHHhcCCccHHHhcccccCcchhhhheeeeeHHHHHHHHHHHHHHhCCCceEEEEeccCccccCC
Confidence 68999999999999999999999999999999999999999999999999999999999999997777777 89999999
Q ss_pred CCCeEEEEEeCCe--EEEEEECCCCCCCCCCCCCCcCCCChHHHHHHHHHHHCCC---cchHHHHHHHHHHHHHHHhccc
Q 029452 80 LGPGLILDVTQEK--IERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGE---RGAIADALILNAAAALLVSCKV 154 (193)
Q Consensus 80 ~~~t~v~~~~~g~--i~~~~~~p~~~Gl~~~~~~~l~~~~~~~~a~~~~~vL~G~---~~~~~~~v~lNaA~~L~~~g~~ 154 (193)
-|+|.+|.+++++ +++|.++|.+||+++++++++.++.|.+||..++++|+|+ .+|..|.+++|+|++|.+++++
T Consensus 260 ~G~t~vw~v~~se~k~e~f~~~P~~Fgl~~h~Ls~~asggP~~NAilleevLSg~~hagdPI~Dy~lmNtAall~vs~~~ 339 (373)
T KOG1438|consen 260 LGGTLVWDVTPSEEKIEEFSFDPLDFGLPRHTLSDLASGGPDYNAILLEEVLSGESHAGDPIADYLLMNTAALLLVSNRV 339 (373)
T ss_pred CCCceEEEecCCceeeeeeecCHhhcCCCcCchhhhccCCCCccHHHHHHHhcCcccCCChHHHHHHHHHHHHHHHhhhh
Confidence 9999999999864 5789999999999999999999999999999999999999 3689999999999999999999
Q ss_pred CCHHHHHHHHHHHHHccHHHHHHHHHHHHhcC
Q 029452 155 NTLAEGVALAREIQLSGKALNTLDLWIEVSKG 186 (193)
Q Consensus 155 ~~i~~g~~~A~e~i~sG~a~~~l~~~~~~~~~ 186 (193)
.+|+||+..|+|.|.||+|++.|+.|++....
T Consensus 340 q~l~EGv~~A~esisSG~Alr~L~~fi~~~s~ 371 (373)
T KOG1438|consen 340 QTLAEGVTVARESISSGKALRTLDSFINISSL 371 (373)
T ss_pred hHHHhhhHHHHHhhcchHHHHHHHHHHhhhhc
Confidence 99999999999999999999999999976543
No 10
>PRK09071 hypothetical protein; Validated
Probab=100.00 E-value=1.2e-46 Score=326.20 Aligned_cols=162 Identities=19% Similarity=0.208 Sum_probs=152.7
Q ss_pred CCCCccCHHhhccHHHhhhCCCCCchHhhhhccCCCCCCceEEeecChhHHHHHHHHHHHcCCceEEEEee-CCccccCC
Q 029452 1 MMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHS-EGLDEMSP 79 (193)
Q Consensus 1 l~ap~~~P~~~~l~~~R~~lG~RT~fN~lgpLlNP~~~~~~v~Gv~h~~~~~~~a~~~~~lg~~~a~vv~G-eG~dE~s~ 79 (193)
||||.|||+|++++++|++||+||+||+||||+||+++++||+|||||+|.++|+++++.+|.++++|||| ||+||+||
T Consensus 154 l~ap~~hPa~~~~~~~R~~lg~RT~fN~lgpL~NPa~~~~~v~Gv~~~~~~~~~a~~l~~lg~~~alvv~G~~G~dE~s~ 233 (323)
T PRK09071 154 LPLEDFAPQLQRMIDLRNTLGLRSPINTLARLLNPLNAKASLQGIFHPGYQQLHREAARLLGDQNALVFKGEGGESERNP 233 (323)
T ss_pred eehHHhChHHHHHHHHHHHhCCCCHHHHHHHHcCcCCCCceEEeeEChhHHHHHHHHHHHcCCCeEEEEECCCCceeecC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred CCCeEEEEEeCCeEEEEEECCCCCCCCCCCCCCcCCCChHHHHHHHHHHHCCCc-ch-HHHHHHHHHHHHHHHhcccCCH
Q 029452 80 LGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGER-GA-IADALILNAAAALLVSCKVNTL 157 (193)
Q Consensus 80 ~~~t~v~~~~~g~i~~~~~~p~~~Gl~~~~~~~l~~~~~~~~a~~~~~vL~G~~-~~-~~~~v~lNaA~~L~~~g~~~~i 157 (193)
+++|+|+++++|++.++.++| ||+++.++ |+++|++++++||+|+. ++ .+|+|++|||++|| .|+++|+
T Consensus 234 ~~~t~v~~~~~g~i~~~~~~~--~g~~~~~~------~~~~na~~~~~vl~G~~~~~~~~d~v~~Naa~aL~-~g~~~sl 304 (323)
T PRK09071 234 DVSTTLYGSRNGEAWDEEWPA--LSEERHVK------PEELDPEQLLAVWRGEEEDEYGENAVIATMALALW-RGLNQSR 304 (323)
T ss_pred CCceEEEEEcCCeEEEEEecc--cccccCCC------CcccCHHHHHHHhCCCCCchHHHHHHHHHHHHHHH-cCCCCCH
Confidence 999999999999999999954 88876543 78999999999999984 44 47999999999999 9999999
Q ss_pred HHHHHHHHHHHHcc
Q 029452 158 AEGVALAREIQLSG 171 (193)
Q Consensus 158 ~~g~~~A~e~i~sG 171 (193)
+||+++|+++|+.+
T Consensus 305 ~eg~~~A~~~w~~r 318 (323)
T PRK09071 305 EEAFEKAAQLWATR 318 (323)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999999876
No 11
>PRK08136 glycosyl transferase family protein; Provisional
Probab=100.00 E-value=2.1e-46 Score=323.76 Aligned_cols=157 Identities=17% Similarity=0.219 Sum_probs=149.7
Q ss_pred CCCCccCHHhhccHHHhhhCCCCCchHhhhhccCC--CCCCceEEeecChhHHHHHHHHHHHcCCceEEEEee-CCcccc
Q 029452 1 MMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNP--ACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHS-EGLDEM 77 (193)
Q Consensus 1 l~ap~~~P~~~~l~~~R~~lG~RT~fN~lgpLlNP--~~~~~~v~Gv~h~~~~~~~a~~~~~lg~~~a~vv~G-eG~dE~ 77 (193)
||||.|||+|++++++|++||+||+||++|||+|| +++++||+|||||+|.++|+++++.+|. +++|||| ||+||+
T Consensus 156 l~ap~~hPa~~~~~~vR~~LG~RT~fN~lgpL~NP~~a~~~~~v~Gv~~~~~~~~~a~~l~~lg~-~alvv~G~~G~dE~ 234 (317)
T PRK08136 156 IPVGVLCPPLARLLALRWRMGVRNSAHTLAKLATPFAEGAALRLSSYTHPEYRDRLAEFFSDIGA-RALLMRGTEGEVYA 234 (317)
T ss_pred EEhHHhCHHHHHHHHHHHHhCCCCHHHHHHHhcCccccCCCeEEEeeeChHHHHHHHHHHHHcCC-CEEEEEcCCCceee
Confidence 68999999999999999999999999999999999 6899999999999999999999999998 9999999 999999
Q ss_pred CCCCCeEEEEEeCCeEEEEEECCCCCCCCCCCCCCc-CCCChHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHHhcccCC
Q 029452 78 SPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESL-QGGGPAYNAEVLRRVLSGERGAIADALILNAAAALLVSCKVNT 156 (193)
Q Consensus 78 s~~~~t~v~~~~~g~i~~~~~~p~~~Gl~~~~~~~l-~~~~~~~~a~~~~~vL~G~~~~~~~~v~lNaA~~L~~~g~~~~ 156 (193)
||+++|+|+++++|+++ +.++|+++|++..+ ++ +++|+++|++++++||+|+ ++.+|+|++|||++||++|+++|
T Consensus 235 s~~~~t~v~~~~~g~~~-~~~~p~~~g~~~~~--~~~~~~~~~~na~~~~~vL~G~-~~~~d~v~lNaa~~l~~~g~~~~ 310 (317)
T PRK08136 235 NPRRCPQIDWIHDGGCR-VLVERQSGSADEPP--ELPAAKDAATTAAWIERVLAGE-VPVPESIARQVACCLVAAGEAAT 310 (317)
T ss_pred cCCCCceEEEEeCCEEE-EEECHHHcCCccCc--hhccCCCHHHHHHHHHHHHCCC-CCcchHHHHHHHHHHHHcCccCC
Confidence 99999999999999988 99999999999876 55 8899999999999999996 46679999999999999999999
Q ss_pred HHHHHH
Q 029452 157 LAEGVA 162 (193)
Q Consensus 157 i~~g~~ 162 (193)
+++|+.
T Consensus 311 ~~~g~~ 316 (317)
T PRK08136 311 IEDGLA 316 (317)
T ss_pred HHHhhc
Confidence 999975
No 12
>PRK06078 pyrimidine-nucleoside phosphorylase; Reviewed
Probab=99.92 E-value=1.5e-24 Score=193.70 Aligned_cols=153 Identities=20% Similarity=0.259 Sum_probs=138.7
Q ss_pred CC-CCccCHHhhccHHHhhhCCCCCchHhhhhccCC--------CCCCceEEeec--------ChhHHHHHHHHHHHcCC
Q 029452 1 MM-STKYHPAMKFVRPVRKKLKVKTVFNILGPMLNP--------ACVPFAVVGVY--------NENLVLKMANALQRFGL 63 (193)
Q Consensus 1 l~-ap~~~P~~~~l~~~R~~lG~RT~fN~lgpLlNP--------~~~~~~v~Gv~--------h~~~~~~~a~~~~~lg~ 63 (193)
+| ||.|||+|+++.++|+.+| | ||++ ||+|| ++++++|+||+ +++..+.+++++..+|.
T Consensus 151 l~~a~~~~PAdk~v~~lR~v~~--t-~n~l-PLi~~SImSKKlAag~~~~vldV~~G~gAfm~~~~~a~~lA~~l~~lG~ 226 (434)
T PRK06078 151 IGQSGNLTPADKKLYALRDVTA--T-VNSI-PLIASSIMSKKIAAGADAIVLDVKTGAGAFMKTVEDAEELAHAMVRIGN 226 (434)
T ss_pred EccCCCcChhhhhhHHHhcccc--c-cChH-HhhhhHhhhhhhhcCCCeEEEeeecCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 46 6999999999999999999 4 9999 99999 99999999999 99999999999999997
Q ss_pred ceEEEEeeCCccccCCCCCeEEEEEeCCeEEEEEECCCCCCCCCCCCCCcCCCChHHHHHHHHHHHCCCc-chHHHHHHH
Q 029452 64 KRALVVHSEGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGER-GAIADALIL 142 (193)
Q Consensus 64 ~~a~vv~GeG~dE~s~~~~t~v~~~~~g~i~~~~~~p~~~Gl~~~~~~~l~~~~~~~~a~~~~~vL~G~~-~~~~~~v~l 142 (193)
+ .+.+.++.++++ |++||. ..+++.|+.+. .++|+|+. .+.+|.++.
T Consensus 227 ~---------------~g~~~~a~lt~~--------~~plG~--------~iGna~Ev~Ea-~~vL~G~~~~~~~d~v~~ 274 (434)
T PRK06078 227 N---------------VGRNTMAVISDM--------SQPLGR--------AIGNALEVLEA-IDTLQGKGPKDLTELVLT 274 (434)
T ss_pred h---------------cCCeEEEEECCC--------Cccccc--------cCCCHHHHHHH-HHHHCCCCcccHHHHHHH
Confidence 4 568888888765 788887 35677888888 89999984 578999999
Q ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHHccHHHHHHHHHHHHhcCCCC
Q 029452 143 NAAAALLVSCKVNTLAEGVALAREIQLSGKALNTLDLWIEVSKGAPA 189 (193)
Q Consensus 143 NaA~~L~~~g~~~~i~~g~~~A~e~i~sG~a~~~l~~~~~~~~~~~~ 189 (193)
||+.+|++.|.+.++++|+++|+++|+||+|+++|++|++++.....
T Consensus 275 ~A~~~L~~~g~~~~~~eg~~~a~e~l~sGkAl~kf~~~v~aqGg~~~ 321 (434)
T PRK06078 275 LGSQMVVLAGKAKTLEEAREHLIEVMNNGKALEKFKEFLSAQGGDAS 321 (434)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhccHHHHHHHHHHHHhCCCch
Confidence 99999999999999999999999999999999999999999987543
No 13
>TIGR02644 Y_phosphoryl pyrimidine-nucleoside phosphorylase. In general, members of this protein family are designated pyrimidine-nucleoside phosphorylase, enzyme family EC 2.4.2.2, as in Bacillus subtilis, and more narrowly as the enzyme family EC 2.4.2.4, thymidine phosphorylase (alternate name: pyrimidine phosphorylase), as in Escherichia coli. The set of proteins encompassed by this model is designated subfamily rather than equivalog for this reason; the protein name from this model should be used when TIGR02643 does not score above trusted cutoff.
Probab=99.75 E-value=4.8e-18 Score=151.02 Aligned_cols=150 Identities=23% Similarity=0.244 Sum_probs=126.6
Q ss_pred CCCC-ccCHHhhccHHHhhhCCCCCchHhhhhccCCCC--------CCceEEee--------cChhHHHHHHHHHHHcCC
Q 029452 1 MMST-KYHPAMKFVRPVRKKLKVKTVFNILGPMLNPAC--------VPFAVVGV--------YNENLVLKMANALQRFGL 63 (193)
Q Consensus 1 l~ap-~~~P~~~~l~~~R~~lG~RT~fN~lgpLlNP~~--------~~~~v~Gv--------~h~~~~~~~a~~~~~lg~ 63 (193)
+|+| .+||+++++.++|+++| |++|+ ||+||+- ++++|++| ++.+....+++.+..+|.
T Consensus 149 l~~~~~l~PAdk~l~~lRd~~~--Tv~si--pLi~aSimSKK~A~G~~~~vlDVk~G~gAfm~~~e~a~~LA~~~~~~g~ 224 (405)
T TIGR02644 149 IGQTKDLAPADKKLYALRDVTG--TVDSI--PLIASSIMSKKLAAGADAIVLDVKVGSGAFMKTLEDAKELAKLMVEIGK 224 (405)
T ss_pred ecCccccCcchhHHHHHhhccc--ccCcH--HHHHHHHHHHHHhcCCCeEEEeecccCCCCcCCHHHHHHHHHHHHHHHH
Confidence 4788 99999999999999999 99999 9999975 89999999 999999999999999986
Q ss_pred ceEE--EEeeCCccccCCCCCeEEEEEeCCeEEEEEECCCCCCCCCCCCCCcCCCChHHHHHHHHHHHCCCc-chHHHHH
Q 029452 64 KRAL--VVHSEGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGER-GAIADAL 140 (193)
Q Consensus 64 ~~a~--vv~GeG~dE~s~~~~t~v~~~~~g~i~~~~~~p~~~Gl~~~~~~~l~~~~~~~~a~~~~~vL~G~~-~~~~~~v 140 (193)
+..+ ++...++|++ +|....+. .| +.-..++|+|+. .+.+|.+
T Consensus 225 ~~g~~~~a~~t~md~p-------------------------lG~~iGna--------lE-v~Eai~~L~g~~p~dl~e~~ 270 (405)
T TIGR02644 225 GAGRKTSALLTDMNQP-------------------------LGRAIGNA--------LE-VKEAVEFLKGEGPADLKELT 270 (405)
T ss_pred HcCCeEEEEecCCCcc-------------------------ccCCCCCh--------hh-HHHHHHHHCCCCcHHHHHHH
Confidence 6444 3333667777 55443222 22 222278999984 6789999
Q ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHHHHccHHHHHHHHHHHHhcCCC
Q 029452 141 ILNAAAALLVSCKVNTLAEGVALAREIQLSGKALNTLDLWIEVSKGAP 188 (193)
Q Consensus 141 ~lNaA~~L~~~g~~~~i~~g~~~A~e~i~sG~a~~~l~~~~~~~~~~~ 188 (193)
+.||+.+|+..|.+.+.++|.++|+++|+||+|++||++|++.+....
T Consensus 271 ~~la~~~L~~~g~a~~~~~g~~~a~~~l~sG~Al~kf~~~v~aQGG~~ 318 (405)
T TIGR02644 271 LALAAEMLLLAGIAKTEKEARALAEDVLESGKALEKFRRFVEAQGGDP 318 (405)
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhCcHHHHHHHHHHHHhCCCh
Confidence 999999999999999999999999999999999999999999887643
No 14
>PRK04350 thymidine phosphorylase; Provisional
Probab=99.75 E-value=1.3e-17 Score=150.96 Aligned_cols=151 Identities=26% Similarity=0.330 Sum_probs=126.1
Q ss_pred CC--CCccCHHhhccHHHhhhCCCCCchHhhhhccC--------------CCCCCceEEeecChhHHHHHHHHHHHcCCc
Q 029452 1 MM--STKYHPAMKFVRPVRKKLKVKTVFNILGPMLN--------------PACVPFAVVGVYNENLVLKMANALQRFGLK 64 (193)
Q Consensus 1 l~--ap~~~P~~~~l~~~R~~lG~RT~fN~lgpLlN--------------P~~~~~~v~Gv~h~~~~~~~a~~~~~lg~~ 64 (193)
+| ||.|||+++++.++|+.++++|++|++++++| |.++..+ +++.+....+++.+..+|.+
T Consensus 226 lfG~a~~l~PAdk~l~~vR~~l~vds~~li~aSImSKKlA~G~~~lvlDVp~G~ga~---v~~~~~A~~LA~~~~~vg~~ 302 (490)
T PRK04350 226 VWGGAVNLSPADDILIRVERPLSIDPRGQLVASILSKKIAAGSTHVVIDIPVGPTAK---VRSVEEARRLARLFEEVGDR 302 (490)
T ss_pred EECCccccCHHHHHHHHHhhhcCCCcHHHHHHHHhhhHhhcCCCceEEecccCCCCc---CCCHHHHHHHHHHHHHHHHh
Confidence 46 89999999999999999999999999999999 9999888 89999999999999999876
Q ss_pred eEEEEeeCCccccCCCCCeEEEEEeCCeEEEEEECCCCCCCCCCCCCCcCCCChHHHHHHHHHHHCCC---cchHHHHHH
Q 029452 65 RALVVHSEGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGE---RGAIADALI 141 (193)
Q Consensus 65 ~a~vv~GeG~dE~s~~~~t~v~~~~~g~i~~~~~~p~~~Gl~~~~~~~l~~~~~~~~a~~~~~vL~G~---~~~~~~~v~ 141 (193)
..+.+ |+. +.++. .|-.+|+. +..+++...++|+|+ ....++.++
T Consensus 303 ~g~~v------~a~---------lTd~~------qPlG~~iG-----------nalEv~e~l~vL~g~~~gp~dl~e~~l 350 (490)
T PRK04350 303 LGLRV------ECA---------ITDGS------QPIGRGIG-----------PALEARDVLAVLENDPDAPNDLREKSL 350 (490)
T ss_pred cCCeE------EEE---------ECCCC------eehhccCC-----------chHHHHHHHHHhCCCCCCCHhHHHHHH
Confidence 55544 121 22221 11113332 467788999999995 346799999
Q ss_pred HHHHHHHHHhcccCCHHHHHHHHHHHHHccHHHHHHHHHHHHhcCC
Q 029452 142 LNAAAALLVSCKVNTLAEGVALAREIQLSGKALNTLDLWIEVSKGA 187 (193)
Q Consensus 142 lNaA~~L~~~g~~~~i~~g~~~A~e~i~sG~a~~~l~~~~~~~~~~ 187 (193)
.||+.+|+..|.+ +.++|+++|++.|+||+|++||+++++.+...
T Consensus 351 ~lA~~~L~~~g~~-~~~~g~~~a~~~L~sG~Al~kf~~ii~aQGG~ 395 (490)
T PRK04350 351 RLAGILLEMGGVA-PGGEGYALAREILESGKALEKFQEIIEAQGGD 395 (490)
T ss_pred HHHHHHHHhcCCC-CHHHHHHHHHHHHhCcHHHHHHHHHHHHcCCC
Confidence 9999999999977 99999999999999999999999999988763
No 15
>TIGR02645 ARCH_P_rylase putative thymidine phosphorylase. Members of this family are closely related to characterized examples of thymidine phosphorylase (EC 2.4.2.4) and pyrimidine nucleoside phosphorylase (RC 2.4.2.2). Most examples are found in the archaea, but other examples in Legionella pneumophila str. Paris and Rhodopseudomonas palustris CGA009.
Probab=98.72 E-value=4.2e-07 Score=82.94 Aligned_cols=152 Identities=23% Similarity=0.292 Sum_probs=100.1
Q ss_pred CCccCHHhhccHHHhhhCCCCCchHhhhhccCC---CCCCceEEee------c--ChhHHHHHHHHHHHcCCceEEEEee
Q 029452 3 STKYHPAMKFVRPVRKKLKVKTVFNILGPMLNP---ACVPFAVVGV------Y--NENLVLKMANALQRFGLKRALVVHS 71 (193)
Q Consensus 3 ap~~~P~~~~l~~~R~~lG~RT~fN~lgpLlNP---~~~~~~v~Gv------~--h~~~~~~~a~~~~~lg~~~a~vv~G 71 (193)
||.|||+++++.++|+.+++.|+==++.-++.= ++.++.|+=| | +.+-.+.+++.+..+|.+
T Consensus 235 a~~l~PAdk~i~~vR~~l~vds~~li~aSImSKKlA~G~~~lvlDvk~G~gAf~~~~~~A~~La~~~~~vg~~------- 307 (493)
T TIGR02645 235 ALNLAPADDVLIRVERPLSIDPRAQMLASIMSKKIAAGSTHVLIDIPVGPGAKVRSLQEAERLARLFIELGDR------- 307 (493)
T ss_pred CcccCHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHhcCCCeEEEeccccCCCcCCCHHHHHHHHHHHHHHHHH-------
Confidence 899999999999999999999976666555432 3345555532 2 233334444444444321
Q ss_pred CCccccCCCCCeEEEEEeCCeEEEEEECCCCCCCCCCCCCCcCCCChHHHHHHHHHHHCCCc---chHHHHHHHHHHHHH
Q 029452 72 EGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGER---GAIADALILNAAAAL 148 (193)
Q Consensus 72 eG~dE~s~~~~t~v~~~~~g~i~~~~~~p~~~Gl~~~~~~~l~~~~~~~~a~~~~~vL~G~~---~~~~~~v~lNaA~~L 148 (193)
.|......++++. .|--.++ |. .-.+.-..++|+|+. ...++-.+.=|+.+|
T Consensus 308 --------~G~~~~a~iTdm~------qPlG~~i----------Gn-alEv~Eal~~L~g~~~~p~dL~e~~~~la~~~L 362 (493)
T TIGR02645 308 --------LGVRVECAITYGS------QPIGRGI----------GP-ALEAKEALAVLERSPAAPFSLREKSLLLAGILL 362 (493)
T ss_pred --------cCCeEEEEECCCC------Ccccccc----------Cc-HHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHH
Confidence 1111122233332 1211111 22 223455668999972 456777777788899
Q ss_pred HHhcccCCHHHHHHHHHHHHHccHHHHHHHHHHHHhcCC
Q 029452 149 LVSCKVNTLAEGVALAREIQLSGKALNTLDLWIEVSKGA 187 (193)
Q Consensus 149 ~~~g~~~~i~~g~~~A~e~i~sG~a~~~l~~~~~~~~~~ 187 (193)
...|.+. ..+|.++|++.|+||+|++|++++++.+...
T Consensus 363 ~~~g~~~-~~~g~~~a~~~l~sG~Al~kf~~ii~aQGG~ 400 (493)
T TIGR02645 363 EMGGAAP-RGAGKELARELLDSGKALEKMKEIIEAQGGD 400 (493)
T ss_pred HhCCCCC-hHHHHHHHHHHHhCcHHHHHHHHHHHHcCCC
Confidence 9999887 6999999999999999999999999988764
No 16
>PRK05820 deoA thymidine phosphorylase; Reviewed
Probab=98.57 E-value=2.3e-06 Score=77.38 Aligned_cols=67 Identities=21% Similarity=0.205 Sum_probs=55.5
Q ss_pred HHHHHHHHCCCc--chHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHccHHHHHHHHHHHHhcCCC
Q 029452 122 AEVLRRVLSGER--GAIADALILNAAAALLVSCKVNTLAEGVALAREIQLSGKALNTLDLWIEVSKGAP 188 (193)
Q Consensus 122 a~~~~~vL~G~~--~~~~~~v~lNaA~~L~~~g~~~~i~~g~~~A~e~i~sG~a~~~l~~~~~~~~~~~ 188 (193)
+.-..++|+|+. ....+.++.-|+.+|+..|.+.|.++|.+++++.|+||+|++||++|++++...+
T Consensus 256 v~Eai~~L~g~~gp~dl~e~~~~la~~ml~~~g~~~~~~~g~~~~~~~l~sG~Al~kF~~~v~aQGGd~ 324 (440)
T PRK05820 256 VREAVEFLTGGYRPPRLVEVTMALAAEMLVLAGLAKDEAEARADLAAVLDSGKAAERFGRMVAAQGGPP 324 (440)
T ss_pred HHHHHHHHCCCCCChhHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCh
Confidence 334467999983 3455555555899999999999999999999999999999999999999887743
No 17
>TIGR03327 AMP_phos AMP phosphorylase. This enzyme family is found, so far, strictly in the Archaea, and only in those with a type III Rubisco enzyme. Most of the members previously were annotated as thymidine phosphorylase, or DeoA. The AMP metabolized by this enzyme may be produced by ADP-dependent sugar kinases.
Probab=98.39 E-value=1.1e-05 Score=73.99 Aligned_cols=153 Identities=23% Similarity=0.268 Sum_probs=96.7
Q ss_pred CCccCHHhhccHHHhhhCCCCCchHhhhhccCC---CCCCceEEee------c--ChhHHHHHHHHHHHcCCceEEEEee
Q 029452 3 STKYHPAMKFVRPVRKKLKVKTVFNILGPMLNP---ACVPFAVVGV------Y--NENLVLKMANALQRFGLKRALVVHS 71 (193)
Q Consensus 3 ap~~~P~~~~l~~~R~~lG~RT~fN~lgpLlNP---~~~~~~v~Gv------~--h~~~~~~~a~~~~~lg~~~a~vv~G 71 (193)
||.|||+++++..+|+.+.+-++==++.-++.= ++.++.|+=| | +.+-...+++.+..+|..
T Consensus 236 a~~l~PAdk~l~alrdt~tvds~~li~aSImSKKlA~G~d~lvlDVk~G~gAfm~~~~~A~~LA~~mv~vg~~------- 308 (500)
T TIGR03327 236 ATNLAPADDKIIKVERPLSIDPRGQMLASVMAKKGAIGADHVVIDIPVGKGAKVKTVEEGRKLARDFIELGDR------- 308 (500)
T ss_pred ccccCHHHHHHHHhccccCCCcHHHHHHHHHHHHHHcCCCeEEEEcCcCCCCcCCCHHHHHHHHHHHHHHHHH-------
Confidence 899999999999999988888764444443321 2344444422 1 222333333333333321
Q ss_pred CCccccCCCCCeEEEEEeCCeEEEEEECCCCCCCCCCCCCCcCCCChHHHHHHHHHHHCCC--cchHHHHHHHHHHHHHH
Q 029452 72 EGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGE--RGAIADALILNAAAALL 149 (193)
Q Consensus 72 eG~dE~s~~~~t~v~~~~~g~i~~~~~~p~~~Gl~~~~~~~l~~~~~~~~a~~~~~vL~G~--~~~~~~~v~lNaA~~L~ 149 (193)
.|......+.++. .|--.++ |++ -.+.-..++|+|+ ....++.++.=|+.+|.
T Consensus 309 --------~G~~~~a~iTdm~------qPlG~~i----------Gna-LEv~Eal~~L~g~~~p~dL~e~~~~la~~~L~ 363 (500)
T TIGR03327 309 --------LGMNVECAITYGG------QPIGRAI----------GPA-LEAKEALKVLEDGEGPNSLIEKSLSLAGILLE 363 (500)
T ss_pred --------cCCeEEEEECCCC------Ccccccc----------CcH-HHHHHHHHHhcCCCCCccHHHHHHHHHHHHHH
Confidence 1111222223322 1211111 222 2244556799994 34577877777889999
Q ss_pred HhcccCCHHHHHHHHHHHHHccHHHHHHHHHHHHhcCCC
Q 029452 150 VSCKVNTLAEGVALAREIQLSGKALNTLDLWIEVSKGAP 188 (193)
Q Consensus 150 ~~g~~~~i~~g~~~A~e~i~sG~a~~~l~~~~~~~~~~~ 188 (193)
..|.+. ..+|.++|++.|+||+|++|++++++.+...+
T Consensus 364 ~~g~~~-~~~g~~~a~~~l~sG~Al~kf~~ii~aQGGd~ 401 (500)
T TIGR03327 364 MGGVAP-RGEGKNLALEILESGKALEKFKEIIAAQGGDP 401 (500)
T ss_pred hCCCCC-hHHHHHHHHHHHhCcHHHHHHHHHHHHcCCCc
Confidence 999987 79999999999999999999999999988754
No 18
>TIGR02643 T_phosphoryl thymidine phosphorylase. Thymidine phosphorylase (alternate name: pyrimidine phosphorylase), EC 2.4.2.4, is the designation for the enzyme of E. coli and other Proteobacteria involved in (deoxy)nucleotide degradation. It often occurs in an operon with a deoxyribose-phosphate aldolase, phosphopentomutase and a purine nucleoside phosphorylase. In many other lineages, the corresponding enzyme is designated pyrimidine-nucleoside phosphorylase (EC 2.4.2.2); the naming convention imposed by this model represents standard literature practice.
Probab=97.67 E-value=0.00024 Score=64.35 Aligned_cols=66 Identities=21% Similarity=0.189 Sum_probs=57.4
Q ss_pred HHHHHHHCCC--cchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHccHHHHHHHHHHHHhcCCC
Q 029452 123 EVLRRVLSGE--RGAIADALILNAAAALLVSCKVNTLAEGVALAREIQLSGKALNTLDLWIEVSKGAP 188 (193)
Q Consensus 123 ~~~~~vL~G~--~~~~~~~v~lNaA~~L~~~g~~~~i~~g~~~A~e~i~sG~a~~~l~~~~~~~~~~~ 188 (193)
.-..++|+|+ .....+.++-=++..|...|.+.+.++|.+++++.|+||+|++|+++|++.+..++
T Consensus 256 ~Eai~~L~g~~gp~dl~e~~~~la~~ml~~~g~~~~~~~~~~~~~~~l~sG~Al~kF~~~v~aQGGd~ 323 (437)
T TIGR02643 256 RNAVDFLTGEKRNPRLEDVTMALAAEMLVSGGLAADEAEARAKLQAVLDSGRAAERFARMVAALGGPA 323 (437)
T ss_pred HHHHHHHCCCCCCccHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCcHHHHHHHHHHHHcCCCc
Confidence 3445799998 35678888888899999999999999999999999999999999999999888754
No 19
>COG0213 DeoA Thymidine phosphorylase [Nucleotide transport and metabolism]
Probab=97.46 E-value=0.00059 Score=61.13 Aligned_cols=68 Identities=25% Similarity=0.264 Sum_probs=58.3
Q ss_pred HHHHHHHHCCCc-chHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHccHHHHHHHHHHHHhcCCCC
Q 029452 122 AEVLRRVLSGER-GAIADALILNAAAALLVSCKVNTLAEGVALAREIQLSGKALNTLDLWIEVSKGAPA 189 (193)
Q Consensus 122 a~~~~~vL~G~~-~~~~~~v~lNaA~~L~~~g~~~~i~~g~~~A~e~i~sG~a~~~l~~~~~~~~~~~~ 189 (193)
++-..++|+|+. ..+.+.++.=|+..|...|.+.+.++|.+++++.|+||+|++|+.++++.+...+.
T Consensus 254 v~Eal~~L~g~~p~dL~e~~l~la~~mL~~~g~a~~~~~a~~~~~~vl~sGkA~ekF~~~v~aQGGd~~ 322 (435)
T COG0213 254 VREALETLKGKGPPDLVELSLALAGEMLEMTGLAKTGEEAKAKAREVLESGKALEKFKEIVAAQGGDPS 322 (435)
T ss_pred HHHHHHHHhccCCccHHHHHHHHHHHHHHHcCccCccHHHHHHHHHHHhCchHHHHHHHHHHHhCCChh
Confidence 334456888863 56788888889999999999999999999999999999999999999999887643
No 20
>PF08844 DUF1815: Domain of unknown function (DUF1815); InterPro: IPR014943 This entry is about 100 amino acids in length and is functionally uncharacterised.
Probab=68.27 E-value=31 Score=25.01 Aligned_cols=51 Identities=24% Similarity=0.386 Sum_probs=37.4
Q ss_pred HHHHHHHHHcCCceEEEEeeCCccccCCCCCeEEEEEeCCeEEEEEECCCCCCCCC
Q 029452 52 LKMANALQRFGLKRALVVHSEGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPR 107 (193)
Q Consensus 52 ~~~a~~~~~lg~~~a~vv~GeG~dE~s~~~~t~v~~~~~g~i~~~~~~p~~~Gl~~ 107 (193)
.-++..++..|+....-.+|||.| .++.+.+..+.++...+|.+. |||+.=
T Consensus 20 qALa~~Le~rG~~AsCYtC~dG~~---~~~ASFmv~lg~~HliRFLVS--d~GIsW 70 (105)
T PF08844_consen 20 QALAIVLERRGYLASCYTCGDGRD---MNSASFMVSLGDNHLIRFLVS--DYGISW 70 (105)
T ss_pred HHHHHHHHhCCceeEEEecCCCCC---CCceeEEEEcCCCcEEEEEEe--cCCeeE
Confidence 446677888898655555567764 256788888888888888884 899874
No 21
>PRK02308 uvsE putative UV damage endonuclease; Provisional
Probab=59.00 E-value=9 Score=33.24 Aligned_cols=66 Identities=12% Similarity=0.149 Sum_probs=49.7
Q ss_pred CccCHHhhccHHHhhhCCCCCchHhhhhccCCCCCCceEEeecChhHHHHHHHHHHHcCCc--eEEEEee
Q 029452 4 TKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLK--RALVVHS 71 (193)
Q Consensus 4 p~~~P~~~~l~~~R~~lG~RT~fN~lgpLlNP~~~~~~v~Gv~h~~~~~~~a~~~~~lg~~--~a~vv~G 71 (193)
|.+.+.+..+..+.++.|+|.++| -+-++|++.++-.+.=- +-..+...++.+..+|.+ ..+|+|.
T Consensus 87 ~~~~~~~~~~g~~~~~~~irls~H-p~y~inL~S~~~ev~e~-Si~~L~~~~~~~~~lG~~~~~~vViHp 154 (303)
T PRK02308 87 EPFKEELREIGEFIKEHNIRLSFH-PDQFVVLNSPKPEVVEN-SIKDLEYHAKLLDLMGIDDSSKINIHV 154 (303)
T ss_pred CCCHHHHHHHHHHHHHcCCCeecc-ChhhhcCCCCCHHHHHH-HHHHHHHHHHHHHHCCCCCCCEEEECC
Confidence 445567788889999999999999 77899998865433322 245666778888899986 3899993
No 22
>PF02641 DUF190: Uncharacterized ACR, COG1993; InterPro: IPR003793 This is an uncharacterised domain found in proteins of unknown function.; PDB: 2DCL_C 1O51_A.
Probab=58.97 E-value=18 Score=25.98 Aligned_cols=31 Identities=19% Similarity=0.214 Sum_probs=24.8
Q ss_pred cChhHHHHHHHHHHHcCCceEEEEee-CCccc
Q 029452 46 YNENLVLKMANALQRFGLKRALVVHS-EGLDE 76 (193)
Q Consensus 46 ~h~~~~~~~a~~~~~lg~~~a~vv~G-eG~dE 76 (193)
.++++.+.+.+.++..|...+.|++| +|.-.
T Consensus 17 ~g~~l~~~ll~~~~~~gi~GaTV~rgi~G~G~ 48 (101)
T PF02641_consen 17 GGKPLYEWLLERAREAGIAGATVFRGIEGFGS 48 (101)
T ss_dssp TTEEHHHHHHHHHHHTT-SEEEEEE-SEEEE-
T ss_pred CceEHHHHHHHHHHHCCCCeEEEEcceeeeCC
Confidence 47788999999999999999999999 88644
No 23
>PF11501 Nsp1: Non structural protein Nsp1; InterPro: IPR021590 Nsp1 is the N-terminal cleavage product from the viral replicase that mediates RNA replication and processing []. The specific function of the protein is unknown however the structure has been determined. The protein has a novel alpha/beta fold formed by a 6 stranded beta barrel with an alpha helix covering one end of the barrel and another helix alongside the barrel []. Nsp1 could be involved in the degradation of mRNA. ; GO: 0004197 cysteine-type endopeptidase activity, 0008242 omega peptidase activity, 0016740 transferase activity, 0016788 hydrolase activity, acting on ester bonds, 0016817 hydrolase activity, acting on acid anhydrides; PDB: 2HSX_A 2GDT_A.
Probab=55.49 E-value=11 Score=27.36 Aligned_cols=23 Identities=17% Similarity=0.110 Sum_probs=17.4
Q ss_pred hcccCCHHHHHHHHHHHHHccHH
Q 029452 151 SCKVNTLAEGVALAREIQLSGKA 173 (193)
Q Consensus 151 ~g~~~~i~~g~~~A~e~i~sG~a 173 (193)
.|-.++.++|++.||+++..|+.
T Consensus 17 rgfgd~vE~Al~eAR~hL~eGt~ 39 (115)
T PF11501_consen 17 RGFGDSVEEALEEARVHLAEGTC 39 (115)
T ss_dssp --S-SSHHHHHHHHHHHHHHT-E
T ss_pred hccchHHHHHHHHHHHHHhcCce
Confidence 45668999999999999999973
No 24
>PF10932 DUF2783: Protein of unknown function (DUF2783); InterPro: IPR021233 This is a bacterial family of uncharacterised protein.
Probab=39.46 E-value=1.1e+02 Score=20.18 Aligned_cols=48 Identities=29% Similarity=0.326 Sum_probs=32.2
Q ss_pred ChHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHHhcccCC---HHHHHHHHHH
Q 029452 117 GPAYNAEVLRRVLSGERGAIADALILNAAAALLVSCKVNT---LAEGVALARE 166 (193)
Q Consensus 117 ~~~~~a~~~~~vL~G~~~~~~~~v~lNaA~~L~~~g~~~~---i~~g~~~A~e 166 (193)
+|.+-.+.+.+.=.|-.+ .+.-.+||.++|.+++...| +.|+++.|++
T Consensus 9 ~pD~fY~~Li~aH~gLs~--e~S~~lnArLiLlLANhIGD~~vL~eAi~~Ar~ 59 (60)
T PF10932_consen 9 DPDDFYEALIEAHRGLSD--EQSAALNARLILLLANHIGDRAVLREAIAAARR 59 (60)
T ss_pred ChhHHHHHHHHHHhCCCH--HHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHhc
Confidence 344445555555555443 34678999999999977665 6788877763
No 25
>PF07287 DUF1446: Protein of unknown function (DUF1446); InterPro: IPR010839 This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=39.05 E-value=21 Score=31.84 Aligned_cols=62 Identities=23% Similarity=0.310 Sum_probs=49.4
Q ss_pred CCCccCHHhhccHHHhhhCCCCCchHhhhhccCCCCCCceEEeecChhHHHHHHHHHHHcCCc-eEEEEee-CCcccc
Q 029452 2 MSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLK-RALVVHS-EGLDEM 77 (193)
Q Consensus 2 ~ap~~~P~~~~l~~~R~~lG~RT~fN~lgpLlNP~~~~~~v~Gv~h~~~~~~~a~~~~~lg~~-~a~vv~G-eG~dE~ 77 (193)
|+|.|-..|+.+++..++-|+|=+.|.=| +||.. +.+...++++.+|.+ ++-+|+| +-.+++
T Consensus 52 Y~~~~~~~L~~~L~~~~~~gIkvI~NaGg--~np~~------------~a~~v~eia~e~Gl~lkvA~V~gDd~~~~v 115 (362)
T PF07287_consen 52 YAPDFVRDLRPLLPAAAEKGIKVITNAGG--LNPAG------------CADIVREIARELGLSLKVAVVYGDDLKDEV 115 (362)
T ss_pred chHHHHHHHHHHHHHHHhCCCCEEEeCCC--CCHHH------------HHHHHHHHHHhcCCCeeEEEEECccchHhH
Confidence 67788888999999999999999999644 36643 899999999999987 6778888 444444
No 26
>PRK12791 flbT flagellar biosynthesis repressor FlbT; Reviewed
Probab=36.27 E-value=1.9e+02 Score=22.04 Aligned_cols=56 Identities=7% Similarity=-0.019 Sum_probs=36.5
Q ss_pred HHHHHCCCc-chHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHccHHHHHHHHHHHH
Q 029452 125 LRRVLSGER-GAIADALILNAAAALLVSCKVNTLAEGVALAREIQLSGKALNTLDLWIEV 183 (193)
Q Consensus 125 ~~~vL~G~~-~~~~~~v~lNaA~~L~~~g~~~~i~~g~~~A~e~i~sG~a~~~l~~~~~~ 183 (193)
++-++-+.+ ....+...--..-++-+. ++..++++.+.+++.+|.-|+-|+.++..
T Consensus 60 vQ~m~l~~~~~~~~~~~~~~~~~l~~~~---p~~~~~l~~~~~~v~~g~~Y~ALK~~R~L 116 (131)
T PRK12791 60 VQLMYLSNDIPAYHGTYLGLIRELIEAV---PSAWPIIEAINNHILNGDLYKALKELRKL 116 (131)
T ss_pred HHHHHhCCchHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 445556653 223343333333333333 67889999999999999999999888764
No 27
>PF15516 BpuSI_N: BpuSI N-terminal domain
Probab=35.86 E-value=33 Score=26.63 Aligned_cols=34 Identities=26% Similarity=0.325 Sum_probs=26.8
Q ss_pred EeecChhHHHHHHHHHHHcCCce-EEEEee--CCccc
Q 029452 43 VGVYNENLVLKMANALQRFGLKR-ALVVHS--EGLDE 76 (193)
Q Consensus 43 ~Gv~h~~~~~~~a~~~~~lg~~~-a~vv~G--eG~dE 76 (193)
+|+|||..-.-+.++|+.+|.+. .=++|- -|..|
T Consensus 8 V~~fHPicksAlnqAL~~~GLd~~yeviHH~~vgsi~ 44 (159)
T PF15516_consen 8 VSVFHPICKSALNQALKNLGLDTQYEVIHHEPVGSIV 44 (159)
T ss_pred cccccHHHHHHHHHHHHHcCCccceeEEEeccCCccc
Confidence 69999999999999999999873 456664 35433
No 28
>PF14207 DpnD-PcfM: DpnD/PcfM-like protein
Probab=35.75 E-value=43 Score=21.07 Aligned_cols=20 Identities=10% Similarity=0.170 Sum_probs=17.2
Q ss_pred ccCCHHHHHHHHHHHHHccH
Q 029452 153 KVNTLAEGVALAREIQLSGK 172 (193)
Q Consensus 153 ~~~~i~~g~~~A~e~i~sG~ 172 (193)
.+.|.++|++++++.+.++.
T Consensus 17 eA~s~eeA~~~v~~~y~~~e 36 (48)
T PF14207_consen 17 EAESEEEAIEKVRDAYRNEE 36 (48)
T ss_pred EeCCHHHHHHHHHHHHhCCC
Confidence 36799999999999998875
No 29
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=34.56 E-value=1.1e+02 Score=25.37 Aligned_cols=42 Identities=24% Similarity=0.371 Sum_probs=24.0
Q ss_pred eEEeecC-hhHHHHHHHHHHHcCCceEEEEeeCCccccCCCCC
Q 029452 41 AVVGVYN-ENLVLKMANALQRFGLKRALVVHSEGLDEMSPLGP 82 (193)
Q Consensus 41 ~v~Gv~h-~~~~~~~a~~~~~lg~~~a~vv~GeG~dE~s~~~~ 82 (193)
.|..+=+ +++.+.=.+-|+.+|++++.|++|||.--....+|
T Consensus 96 ~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~aP 138 (209)
T COG2518 96 RVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEEAP 138 (209)
T ss_pred eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCCCC
Confidence 3444432 33333333448889999999999875433333333
No 30
>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme. This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.
Probab=33.66 E-value=33 Score=30.04 Aligned_cols=56 Identities=25% Similarity=0.315 Sum_probs=33.5
Q ss_pred HhhhCCCCCchHhhhhccCCCCC--CceEEe--------ec-ChhHHHHHHHHH-HHcCCceEEEEee
Q 029452 16 VRKKLKVKTVFNILGPMLNPACV--PFAVVG--------VY-NENLVLKMANAL-QRFGLKRALVVHS 71 (193)
Q Consensus 16 ~R~~lG~RT~fN~lgpLlNP~~~--~~~v~G--------v~-h~~~~~~~a~~~-~~lg~~~a~vv~G 71 (193)
+++++|+|+++|--|.+.|=.+. +-.|+- ++ -+++.+...+.+ +..|.++++++.|
T Consensus 1 ~~~~~~~~~~ina~g~~t~~g~s~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~g 68 (363)
T TIGR01437 1 IYEKYGLKKVINASGKMTILGVSTVSDEVADAQKRGAQNYFEIKELVNKTGEYIANLLGVEDAVIVSS 68 (363)
T ss_pred CCccCCCceEEECCcEeecCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhCCCeEEEEcC
Confidence 36789999999999999665432 111110 00 124444444444 3458888888886
No 31
>COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=32.37 E-value=93 Score=26.95 Aligned_cols=65 Identities=22% Similarity=0.335 Sum_probs=45.1
Q ss_pred CCceEEeecChhHHHHHHHHHHHcCCceEEEEee-CCccccC-CCCCeEEEEEeCCeEEEEEECCCCCCCC
Q 029452 38 VPFAVVGVYNENLVLKMANALQRFGLKRALVVHS-EGLDEMS-PLGPGLILDVTQEKIERFSFDPLDYGIP 106 (193)
Q Consensus 38 ~~~~v~Gv~h~~~~~~~a~~~~~lg~~~a~vv~G-eG~dE~s-~~~~t~v~~~~~g~i~~~~~~p~~~Gl~ 106 (193)
...|++=|++++++.--.+.+...|.+..+||-| +..+++- ..|...-| |--.+|.+.|+--|+.
T Consensus 21 ~~KqLlpV~~KPmi~y~l~~L~~aGI~dI~II~~~~~~~~~~~llGdgs~~----gv~itY~~Q~~p~GlA 87 (286)
T COG1209 21 VPKQLLPVYDKPMIYYPLETLMLAGIRDILIVVGPEDKPTFKELLGDGSDF----GVDITYAVQPEPDGLA 87 (286)
T ss_pred CCcccceecCcchhHhHHHHHHHcCCceEEEEecCCchhhhhhhhcCcccc----CcceEEEecCCCCcHH
Confidence 4789999999999999999999999999999988 5544331 22221111 2225566666655554
No 32
>PHA01794 hypothetical protein
Probab=32.30 E-value=88 Score=23.89 Aligned_cols=62 Identities=24% Similarity=0.270 Sum_probs=39.3
Q ss_pred HHHHHHHHCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHH---------------HHHHHHccHHHHHHHHHHHH
Q 029452 122 AEVLRRVLSGERGAIADALILNAAAALLVSCKVNTLAEGVAL---------------AREIQLSGKALNTLDLWIEV 183 (193)
Q Consensus 122 a~~~~~vL~G~~~~~~~~v~lNaA~~L~~~g~~~~i~~g~~~---------------A~e~i~sG~a~~~l~~~~~~ 183 (193)
-.++..||.+.+++..|.|.+.+.=.|.--...++|++.++. =.|+++||==..++++|++.
T Consensus 24 g~Lf~~ile~dd~Alvdllrl~~~~~lted~~~~aI~d~v~~~~~Ee~~~e~lF~eleqEm~~SGFF~~ki~kyien 100 (134)
T PHA01794 24 GALFFNILERDESAIVDLVRLSAKKALTEDEILDAIADFVETFEDEEGTTEGLFAELEKEMVDSGFFRAKIKKYIEN 100 (134)
T ss_pred HHHHHHHHhcchHHHHHHHHHHhccccChhhHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 467889999988888888877655333322223344444422 24677888777777777653
No 33
>PF02885 Glycos_trans_3N: Glycosyl transferase family, helical bundle domain Prosite entry for Thymidine and pyrimidine-nucleoside phosphorylases; InterPro: IPR017459 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. The glycosyl transferase family includes anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase (2.4.2.2 from EC) catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism. This N-terminal domain is found in various family 3 glycosyl transferases, including anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism.; PDB: 2DSJ_B 2ELC_B 2BPQ_A 1ZVW_B 3QR9_B 1V8G_B 2WK5_C 2J0F_C 2WK6_B 1UOU_A ....
Probab=32.24 E-value=1.4e+02 Score=19.33 Aligned_cols=50 Identities=18% Similarity=0.144 Sum_probs=30.2
Q ss_pred ChHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHcc
Q 029452 117 GPAYNAEVLRRVLSGERGAIADALILNAAAALLVSCKVNTLAEGVALAREIQLSG 171 (193)
Q Consensus 117 ~~~~~a~~~~~vL~G~~~~~~~~v~lNaA~~L~~~g~~~~i~~g~~~A~e~i~sG 171 (193)
+.++....+..+++|+-++..- +|++.-+.-+..+.+|=...++...+++
T Consensus 16 s~~e~~~~~~~i~~g~~s~~qi-----aAfL~al~~kget~~Eiag~~~am~~~a 65 (66)
T PF02885_consen 16 SREEAKAAFDAILDGEVSDAQI-----AAFLMALRMKGETPEEIAGFAKAMREHA 65 (66)
T ss_dssp -HHHHHHHHHHHHTTSS-HHHH-----HHHHHHHHHH---HHHHHHHHHHHHHTS
T ss_pred CHHHHHHHHHHHHcCCCCHHHH-----HHHHHHHHHhCcCHHHHHHHHHHHHHhc
Confidence 6788889999999998654311 3333333334467888777777777665
No 34
>PF13486 Dehalogenase: Reductive dehalogenase subunit
Probab=32.05 E-value=38 Score=29.36 Aligned_cols=27 Identities=26% Similarity=0.502 Sum_probs=20.1
Q ss_pred ECCCCCCCCCCCCCCcCCCChHHHHHHHHHHHC
Q 029452 98 FDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLS 130 (193)
Q Consensus 98 ~~p~~~Gl~~~~~~~l~~~~~~~~a~~~~~vL~ 130 (193)
-+|+++|+++ -.++||||++.++.+++
T Consensus 126 ~tPe~~GvPk------WqGTPEEN~~miRaA~r 152 (308)
T PF13486_consen 126 PTPEELGVPK------WQGTPEENLRMIRAAAR 152 (308)
T ss_pred cchhhcCCCc------ccCCHHHHHHHHHHHHH
Confidence 4577777654 34799999999997664
No 35
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=31.96 E-value=1.7e+02 Score=21.65 Aligned_cols=54 Identities=19% Similarity=0.050 Sum_probs=35.4
Q ss_pred CChHHHHHHHHHHHCCCc-chHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHccH
Q 029452 116 GGPAYNAEVLRRVLSGER-GAIADALILNAAAALLVSCKVNTLAEGVALAREIQLSGK 172 (193)
Q Consensus 116 ~~~~~~a~~~~~vL~G~~-~~~~~~v~lNaA~~L~~~g~~~~i~~g~~~A~e~i~sG~ 172 (193)
|.+++....+++.+.... ++..+.+....|++|+..|+. +||++...+++.+..
T Consensus 52 G~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~---~eAl~~~l~~la~~~ 106 (120)
T PF12688_consen 52 GRYDEALALLEEALEEFPDDELNAALRVFLALALYNLGRP---KEALEWLLEALAETL 106 (120)
T ss_pred CCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCCH---HHHHHHHHHHHHHHH
Confidence 566777777777776533 344556666677777776654 778887777776433
No 36
>PF03681 UPF0150: Uncharacterised protein family (UPF0150); InterPro: IPR005357 This family of small proteins is uncharacterised. In Q9A3L8 from SWISSPROT this domain is found next to a DNA binding helix-turn-helix domain IPR002145 from INTERPRO, which suggests that this is some kind of ligand binding domain.; PDB: 2DSY_C 2YZT_A 3KWR_A.
Probab=31.34 E-value=53 Score=19.88 Aligned_cols=14 Identities=36% Similarity=0.427 Sum_probs=7.7
Q ss_pred CCHHHHHHHHHHHH
Q 029452 155 NTLAEGVALAREIQ 168 (193)
Q Consensus 155 ~~i~~g~~~A~e~i 168 (193)
+|++|+++.++++|
T Consensus 29 ~t~eea~~~~~eal 42 (48)
T PF03681_consen 29 DTLEEALENAKEAL 42 (48)
T ss_dssp SSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 45555555555554
No 37
>COG0336 TrmD tRNA-(guanine-N1)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=30.74 E-value=54 Score=27.61 Aligned_cols=54 Identities=15% Similarity=0.196 Sum_probs=32.7
Q ss_pred chHhhhhccCCCCCCceEEeecChhHHHHHHHHHHHcCCceEEEEee--CCccccCCC
Q 029452 25 VFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHS--EGLDEMSPL 80 (193)
Q Consensus 25 ~fN~lgpLlNP~~~~~~v~Gv~h~~~~~~~a~~~~~lg~~~a~vv~G--eG~dE~s~~ 80 (193)
+++.+.-+-.+.++...++.=--+.+-...++-+. ..++.+++|| ||.||-...
T Consensus 67 i~~Al~~~~~~~~~~vi~lsP~G~~f~Q~~a~eLa--~~~~lv~iCGrYEGiDeRvi~ 122 (240)
T COG0336 67 LFDALDSVKAAKKAKVILLSPQGKPFTQARARELA--KEEHLVLICGRYEGIDERVIE 122 (240)
T ss_pred HHHHHHHHHhccCCeEEEECCCCCccCHHHHHHHh--cCCCEEEEeccccchhHHHHh
Confidence 44444444444434444444444555556655555 3468999999 999998664
No 38
>PF01364 Peptidase_C25: Peptidase family C25 This family belongs to family C25 of the peptidase classification.; InterPro: IPR001769 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C25 (gingipain, clan CD). The protein fold of the peptidase domain for members of this entry resembles that of caspase 1, the type example for clan CD. This is a protein family found only in the bacteria. Porphyromonas gingivalis (Bacteroides gingivalis) a Gram-negative anaerobic bacterial species strongly associated with adult periodontitis. One of its distinguishing characteristics and putative virulence properties is the ability to agglutinate erythrocytes []. It is a highly proteolytic organism which metabolises small peptides and amino acids. Indirect evidence suggests that the proteases produced by this microorganism constitute an important virulence factor []. Protease-encoding genes have been shown to contain multiple copies of repeated nucleotide sequences. These conserved sequences have also been found in haemagglutinin genes [].; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 1CVR_A.
Probab=30.31 E-value=60 Score=28.58 Aligned_cols=67 Identities=9% Similarity=0.073 Sum_probs=45.7
Q ss_pred CCccCHHhhccHHHhhhCCCCCchHhhhhccCCCCCCceEEeecChhHHHHHHHHHHHcC---CceEEEEeeCCc
Q 029452 3 STKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFG---LKRALVVHSEGL 74 (193)
Q Consensus 3 ap~~~P~~~~l~~~R~~lG~RT~fN~lgpLlNP~~~~~~v~Gv~h~~~~~~~a~~~~~lg---~~~a~vv~GeG~ 74 (193)
.|.|.+++..++..|++.|++|.+=+++-+.|-+. -|..++.-+..+.+-+..-. ..+-+++=|++.
T Consensus 6 ~~~~~~~~~~la~~r~~~G~~~~vv~v~~I~~~f~-----~G~~~~~aIR~fi~~~y~~~~~~~~~yvlLvGd~~ 75 (378)
T PF01364_consen 6 PPEFMDAAQRLAEWRRSQGYKVLVVTVEDIYNEFS-----YGIPDPTAIRNFIRYAYDNWSPPKPRYVLLVGDAS 75 (378)
T ss_dssp -GGGGGG-HHHHHHHHHTT-EEEEEEHHHH-SS------------HHHHHHHHHHHHHST----EEEEEEES-T-
T ss_pred CHHHHHHHHHHHHHHHHcCCcEEEEEHHHhhhhhh-----hccccHHHHHHHHHHHHHhcccCCCcEEEEEcccc
Confidence 46789999999999999999999999999998876 67778888888888888776 345677778763
No 39
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=29.72 E-value=86 Score=26.56 Aligned_cols=90 Identities=21% Similarity=0.204 Sum_probs=54.5
Q ss_pred cChhHHHHHHHHHHHcCCceEEEEee--CCccccCCCCCeEEEEEeCCeEEEEEECCCCCCCCCCCCC-CcCCCChHHHH
Q 029452 46 YNENLVLKMANALQRFGLKRALVVHS--EGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLE-SLQGGGPAYNA 122 (193)
Q Consensus 46 ~h~~~~~~~a~~~~~lg~~~a~vv~G--eG~dE~s~~~~t~v~~~~~g~i~~~~~~p~~~Gl~~~~~~-~l~~~~~~~~a 122 (193)
.+|.+.+++.++++.-|. +..+..| -|.|-++-.+-..|-++. .+-.-+|.++|++...-. -+..|++.+.+
T Consensus 96 ad~~l~erl~~lak~~~~-rv~~pSGAiGGlD~l~aar~g~i~~V~----lttrKpp~~lg~dl~~~ktVlfeG~a~eA~ 170 (255)
T COG1712 96 ADEGLRERLRELAKCGGA-RVYLPSGAIGGLDALAAARVGGIEEVV----LTTRKPPAELGIDLEDKKTVLFEGSASEAV 170 (255)
T ss_pred cChHHHHHHHHHHhcCCc-EEEecCccchhHHHHHHhhcCCeeEEE----EEeecChHHhCcCcccCceEEEeccHHHHH
Confidence 578899999888888875 7888998 688888765433333322 122335677777643211 12345666655
Q ss_pred HHHHHHHCCCcchHHHHHHHHHHHHHHHhcc
Q 029452 123 EVLRRVLSGERGAIADALILNAAAALLVSCK 153 (193)
Q Consensus 123 ~~~~~vL~G~~~~~~~~v~lNaA~~L~~~g~ 153 (193)
..+ | -=+|.|+.|-++|.
T Consensus 171 k~F---------P----kNiNVAaTlsLA~~ 188 (255)
T COG1712 171 KKF---------P----KNINVAATLSLAGG 188 (255)
T ss_pred HhC---------c----ccccHHHHHHhhcc
Confidence 554 1 12477777777665
No 40
>PF14852 Fis1_TPR_N: Fis1 N-terminal tetratricopeptide repeat; PDB: 1IYG_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A 1PC2_A 1NZN_A.
Probab=29.26 E-value=36 Score=19.82 Aligned_cols=31 Identities=29% Similarity=0.265 Sum_probs=25.7
Q ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHHHHcc
Q 029452 141 ILNAAAALLVSCKVNTLAEGVALAREIQLSG 171 (193)
Q Consensus 141 ~lNaA~~L~~~g~~~~i~~g~~~A~e~i~sG 171 (193)
.+|=|-+|.-+....++.+|+.+-.+..+++
T Consensus 4 ~FnyAw~Lv~S~~~~d~~~Gi~lLe~l~~~~ 34 (35)
T PF14852_consen 4 QFNYAWGLVKSNNREDQQEGIALLEELYRDE 34 (35)
T ss_dssp HHHHHHHHHHSSSHHHHHHHHHHHHHHCCCS
T ss_pred hhHHHHHHhcCCCHHHHHHHHHHHHHHHhcc
Confidence 4688889998888889999999988877654
No 41
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=29.21 E-value=41 Score=20.22 Aligned_cols=22 Identities=14% Similarity=0.398 Sum_probs=15.3
Q ss_pred HHHHHHHHHHcCCceEEEEeeC
Q 029452 51 VLKMANALQRFGLKRALVVHSE 72 (193)
Q Consensus 51 ~~~~a~~~~~lg~~~a~vv~Ge 72 (193)
.+-+.+.++.+..++.++||||
T Consensus 20 ~~~L~~~i~~~~p~~vilVHGe 41 (43)
T PF07521_consen 20 REELLEFIEQLNPRKVILVHGE 41 (43)
T ss_dssp HHHHHHHHHHHCSSEEEEESSE
T ss_pred HHHHHHHHHhcCCCEEEEecCC
Confidence 3445556666667899999984
No 42
>PF13723 Ketoacyl-synt_2: Beta-ketoacyl synthase, N-terminal domain
Probab=26.53 E-value=2.6e+02 Score=23.06 Aligned_cols=56 Identities=16% Similarity=0.129 Sum_probs=43.3
Q ss_pred CChHHHHHHHHHHHCCCc-chH-HHHHHHHHHHHHHHhc------------ccCCHHHHHHHHHHHHHcc
Q 029452 116 GGPAYNAEVLRRVLSGER-GAI-ADALILNAAAALLVSC------------KVNTLAEGVALAREIQLSG 171 (193)
Q Consensus 116 ~~~~~~a~~~~~vL~G~~-~~~-~~~v~lNaA~~L~~~g------------~~~~i~~g~~~A~e~i~sG 171 (193)
|+.+.+.+++.++.+++. +|. ...=+-||++.+|... ...+++.|+-.|.-.+++|
T Consensus 62 Gel~~t~~ll~~l~~~~~lSPT~Fs~SVHNA~aG~~sI~~~~~~~~tal~a~~~sf~~aLleA~~~l~~~ 131 (218)
T PF13723_consen 62 GELERTFKLLEALAEEEELSPTAFSQSVHNAAAGYWSIATKNTGPNTALAAGEDSFEAALLEAAAQLAEG 131 (218)
T ss_pred CcHHHHHHHHHHHHhCCCcCccchhhhhhhHHHHHHHHHhCCCCceEEEecCcchHHHHHHHHHHHHHcC
Confidence 567888899999999875 443 3334689998888743 3358999999999999998
No 43
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=25.27 E-value=1.2e+02 Score=29.53 Aligned_cols=62 Identities=10% Similarity=0.005 Sum_probs=43.0
Q ss_pred CChHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHccHHHHHHHHHH
Q 029452 116 GGPAYNAEVLRRVLSGERGAIADALILNAAAALLVSCKVNTLAEGVALAREIQLSGKALNTLDLWI 181 (193)
Q Consensus 116 ~~~~~~a~~~~~vL~G~~~~~~~~v~lNaA~~L~~~g~~~~i~~g~~~A~e~i~sG~a~~~l~~~~ 181 (193)
|.-++.-+.++++++. +|-..-+.++=|.+|+..|+.++=..+++.|.+....|. +|+.++.
T Consensus 168 g~~~~A~~~y~~~~~~--~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~--~~~~~~~ 229 (694)
T PRK15179 168 GQSEQADACFERLSRQ--HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGA--RKLTRRL 229 (694)
T ss_pred cchHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcch--HHHHHHH
Confidence 4556667777777762 222234667788888888888777888888888887877 6655554
No 44
>KOG1116 consensus Sphingosine kinase, involved in sphingolipid metabolism [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=25.24 E-value=1.1e+02 Score=29.06 Aligned_cols=51 Identities=24% Similarity=0.279 Sum_probs=43.4
Q ss_pred CchHhhhhccCCCCCCceEEeecChhHHHHHHHHHHHcCCceEEEEeeCCc
Q 029452 24 TVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHSEGL 74 (193)
Q Consensus 24 T~fN~lgpLlNP~~~~~~v~Gv~h~~~~~~~a~~~~~lg~~~a~vv~GeG~ 74 (193)
.+-|.++||+.=+....-|+=..++....-+++.+-...++-.++|.|||+
T Consensus 198 ~F~~~v~Pll~~A~i~~evv~T~~~~HArei~rt~dl~kyDgIv~vsGDGl 248 (579)
T KOG1116|consen 198 LFKNHVEPLLSEAGISFEVVLTTRPNHAREIVRTLDLGKYDGIVCVSGDGL 248 (579)
T ss_pred HHHhhhhhhhhhcCceEEEEEecCccHHHHHHHhhhccccceEEEecCCcC
Confidence 467889999998888888999999999999999996667777777778986
No 45
>KOG2278 consensus RNA:NAD 2'-phosphotransferase TPT1 [Translation, ribosomal structure and biogenesis]
Probab=25.17 E-value=99 Score=25.08 Aligned_cols=63 Identities=22% Similarity=0.320 Sum_probs=46.4
Q ss_pred hhhhccCCCCCCceEEeecChhHHHHHHHHHHHcCCceEEEEee-CCccc-cC-CCCCeEEEEEeC
Q 029452 28 ILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHS-EGLDE-MS-PLGPGLILDVTQ 90 (193)
Q Consensus 28 ~lgpLlNP~~~~~~v~Gv~h~~~~~~~a~~~~~lg~~~a~vv~G-eG~dE-~s-~~~~t~v~~~~~ 90 (193)
.|.|+.+|...+..|-|.|-+.+..+++.-+...+..++=.-.| -|-.+ +| ......|+.+-|
T Consensus 95 ~l~pi~~~s~lP~lVHGT~~k~~~~Il~sGls~m~RnHvHlspGl~~d~gVISGmRss~nvyIfId 160 (207)
T KOG2278|consen 95 LLKPILSPSELPVLVHGTYRKNWPSILASGLSRMNRNHVHLSPGLPGDPGVISGMRSSCNVYIFID 160 (207)
T ss_pred hhcccCChhhCchheechhhhhhHHHHHhhcccccCCeeeecCCCCCCcchhhhhhccceEEEEec
Confidence 67899999988899999999999999999999988777666666 33222 23 233455665544
No 46
>TIGR00629 uvde UV damage endonuclease UvdE. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=24.36 E-value=62 Score=28.37 Aligned_cols=58 Identities=14% Similarity=0.160 Sum_probs=41.9
Q ss_pred CccCHHhhccHHHhhhCCCCCchHhhhhccCCCCCCceEEeecChh-------HHHHHHHHHHHcCCc------eEEEEe
Q 029452 4 TKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNEN-------LVLKMANALQRFGLK------RALVVH 70 (193)
Q Consensus 4 p~~~P~~~~l~~~R~~lG~RT~fN~lgpLlNP~~~~~~v~Gv~h~~-------~~~~~a~~~~~lg~~------~a~vv~ 70 (193)
+.+.+.++.+..+-++.|+|..||- +.+.+++--+++ .+..+++++..+|.. +.+|+|
T Consensus 90 ~~~~~~l~~iG~~a~~~~iRLS~Hp---------~qfi~LnS~~~evv~~Si~~L~~ha~~l~~mg~~~~~~~~~~iviH 160 (312)
T TIGR00629 90 TFAQKELREIGELAKTHQHRLTFHP---------GQFTQFTSPRESVVKSAIRDLAYHDEMLSAMKLAEQLNKDAVIIIH 160 (312)
T ss_pred HHHHHHHHHHHHHHHHcCeEEEECC---------CccccCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccCCCceEEEc
Confidence 4556778888888899999998872 344455554444 455688888999854 589999
No 47
>PF03851 UvdE: UV-endonuclease UvdE; InterPro: IPR004601 Schizosaccharomyces pombe ultraviolet damage endonuclease (UVDE or Uve1p) performs the initial step in an alternative excision repair pathway for UV-induced DNA damage. This DNA repair pathway was originally thought to be specific for UV damage, however Uve1p also recognises UV-induced bipyrimidine photoadducts and other non-UV-induced DNA adducts []. The Deinococcus radiodurans UVSE protein has also shown to be a UV DNA damage endonuclease that catalyzes repair of UV-induced DNA damage by a similar mechanism [].; GO: 0004519 endonuclease activity, 0006289 nucleotide-excision repair, 0009411 response to UV; PDB: 3BZG_A 3BZJ_A 3C0L_A 3C0S_A 3C0Q_A.
Probab=23.76 E-value=56 Score=28.07 Aligned_cols=58 Identities=16% Similarity=0.255 Sum_probs=37.9
Q ss_pred ccCHHhhccHHHhhhCCCCCchHhhhhccCCCCCCceEEeecChhH-------HHHHHHHHHHcCCc----eEEEEee
Q 029452 5 KYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENL-------VLKMANALQRFGLK----RALVVHS 71 (193)
Q Consensus 5 ~~~P~~~~l~~~R~~lG~RT~fN~lgpLlNP~~~~~~v~Gv~h~~~-------~~~~a~~~~~lg~~----~a~vv~G 71 (193)
.+.+.++.+..+-++.|+|..||- .++.|++--+++. ++.++++|..+|.. ..+++|+
T Consensus 84 ~~~~~l~~iG~~~~~~~iRls~HP---------~qf~vLnSp~~~Vv~~si~~L~yH~~~Ld~mg~~~~~~~~i~IH~ 152 (275)
T PF03851_consen 84 EFAEELAEIGDLAKENGIRLSMHP---------DQFTVLNSPREEVVENSIRDLEYHARLLDLMGLDDSPDHKINIHV 152 (275)
T ss_dssp HHHHHHHHHHHHHHHTT-EEEE------------TT--TT-SSHHHHHHHHHHHHHHHHHHHHTT-TT----EEEEE-
T ss_pred HHHHHHHHHHHHHHHcCCeEEecC---------CcceeCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccEEEEee
Confidence 456678888899999999998871 3566777666664 45678888889875 5699995
No 48
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=23.70 E-value=1.2e+02 Score=25.57 Aligned_cols=43 Identities=14% Similarity=0.254 Sum_probs=35.1
Q ss_pred CCCCchHhhhhccCCCCCCceEEeecChhHHHHHHHHHHHcCCceE
Q 029452 21 KVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRA 66 (193)
Q Consensus 21 G~RT~fN~lgpLlNP~~~~~~v~Gv~h~~~~~~~a~~~~~lg~~~a 66 (193)
|+|| ++.++.|++ ++..+.++|-+--+=.+.+.++++..| ++.
T Consensus 83 GIRs-~~~v~~ll~-~G~~rViiGt~av~~p~~v~~~~~~~g-~ri 125 (241)
T COG0106 83 GIRS-LEDVEALLD-AGVARVIIGTAAVKNPDLVKELCEEYG-DRI 125 (241)
T ss_pred CcCC-HHHHHHHHH-CCCCEEEEecceecCHHHHHHHHHHcC-CcE
Confidence 7887 799999999 889999999777777777788888888 443
No 49
>PF00538 Linker_histone: linker histone H1 and H5 family; InterPro: IPR005818 Histone proteins have central roles in both chromatin organisation (as structural units of the nucleosome) and gene regulation (as dynamic components that have a direct impact on DNA transcription and replication). Eukaryotic DNA wraps around a histone octamer to form a nucleosome, the first order of compaction of eukaryotic chromatin. The core histone octamer is composed of a central H3-H4 tetramer and two flanking H2A-H2B dimers. Each of the core histone contains a common structural motif, called the histone fold, which facilitates the interactions between the individual core histones. In addition to the core histones, there is a "linker histone" called H1 (or H5 in avian species). The linker histones present in all multicellular eukaryotes are the most divergent group of histones, with numerous cell type- and stage-specific variant. Linker histone H1 is an essential component of chromatin structure. H1 links nucleosomes into higher order structures. Histone H5 performs the same function as histone H1, and replaces H1 in certain cells. The structure of GH5, the globular domain of the linker histone H5 is known [, ]. The fold is similar to the DNA-binding domain of the catabolite gene activator protein, CAP, thus providing a possible model for the binding of GH5 to DNA. The linker histones, which do not contain the histone fold motif, are critical to the higher-order compaction of chromatin, because they bind to internucleosomal DNA and facilitate interactions between individual nucleosomes. In addition, H1 variants have been shown to be involved in the regulation of developmental genes. A common feature of this protein family is a tripartite structure in which a globular (H15) domain of about 80 amino acids is flanked by two less structured N- and C-terminal tails. The H15 domain is also characterised by high sequence homology among the family of linker histones. The highly conserved H15 domain is essential for the binding of H1 or H5 to the nucleosome. It consists of a three helix bundle (I-III), with a beta-hairpin at the C terminus. There is also a short three-residue stretch between helices I and II that is in the beta-strand conformation. Together with the C-terminal beta-hairpin, this strand forms the third strand of an antiparallel beta-sheet [, , , ]. Proteins known to contain a H15 domain are: - Eukaryotic histone H1. The histones H1 constitute a family with many variants, differing in their affinity for chromatin. Several variants are simultaneously present in a single cell. For example, the nucleated erythrocytes of birds contain both H1 and H5, the latter being an extreme variant of H1. - Eukaryotic MHYST family of histone acetyltransferase. Histone acetyltransferases transfer an acetyl group from acetyl-CoA to the epsylon- amino group of lysine within the basic NH2-termini of histones, which bind the acidic phosphates of DNA []. This entry represents the H15 domain.; GO: 0003677 DNA binding, 0006334 nucleosome assembly, 0000786 nucleosome, 0005634 nucleus; PDB: 2LSO_A 2RQP_A 1UHM_A 1UST_A 1GHC_A 1HST_A 1YQA_A 1USS_A.
Probab=23.65 E-value=68 Score=21.63 Aligned_cols=19 Identities=5% Similarity=0.013 Sum_probs=16.1
Q ss_pred cChhHHHHHHHHHHHcCCc
Q 029452 46 YNENLVLKMANALQRFGLK 64 (193)
Q Consensus 46 ~h~~~~~~~a~~~~~lg~~ 64 (193)
.||+|.+++.+++..++.+
T Consensus 1 shP~y~~mI~eAI~~l~er 19 (77)
T PF00538_consen 1 SHPPYSDMILEAIKALKER 19 (77)
T ss_dssp -SSCHHHHHHHHHHHCCSS
T ss_pred CCCCHHHHHHHHHHHcCCC
Confidence 4899999999999999764
No 50
>PF13041 PPR_2: PPR repeat family
Probab=23.52 E-value=1.7e+02 Score=17.31 Aligned_cols=33 Identities=21% Similarity=0.311 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHccH
Q 029452 138 DALILNAAAALLVSCKVNTLAEGVALAREIQLSGK 172 (193)
Q Consensus 138 ~~v~lNaA~~L~~~g~~~~i~~g~~~A~e~i~sG~ 172 (193)
|.+.+|+-+--+. +..++++|++.-++..++|-
T Consensus 2 ~~~~yn~li~~~~--~~~~~~~a~~l~~~M~~~g~ 34 (50)
T PF13041_consen 2 DVVTYNTLISGYC--KAGKFEEALKLFKEMKKRGI 34 (50)
T ss_pred chHHHHHHHHHHH--HCcCHHHHHHHHHHHHHcCC
Confidence 4566776655544 46689999999999888874
No 51
>KOG4435 consensus Predicted lipid kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=23.10 E-value=93 Score=28.58 Aligned_cols=108 Identities=18% Similarity=0.196 Sum_probs=64.7
Q ss_pred CCCCC-chHhhhhccCCCCCCceEEeecChhHHHHHHHHHHHcCCceEEEEee-CCc-cccCCCCCeEEEEEeCCeEEEE
Q 029452 20 LKVKT-VFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHS-EGL-DEMSPLGPGLILDVTQEKIERF 96 (193)
Q Consensus 20 lG~RT-~fN~lgpLlNP~~~~~~v~Gv~h~~~~~~~a~~~~~lg~~~a~vv~G-eG~-dE~s~~~~t~v~~~~~g~i~~~ 96 (193)
=|.|+ ++|-..|++.-++...-|+-.-|..-.+.+++++.... .+++|-| ||. -|+.+ | |.. +.+..-.+
T Consensus 74 ~~~r~~f~kna~P~lHLaG~~V~Ivktd~~gqak~l~e~~~t~~--Dii~VaGGDGT~~eVVT-G---i~R-rr~~~~pv 146 (535)
T KOG4435|consen 74 RGCRDQFNKNALPLLHLAGVQVDIVKTDNQGQAKALAEAVDTQE--DIIYVAGGDGTIGEVVT-G---IFR-RRKAQLPV 146 (535)
T ss_pred chhhhhhhcccchheeeccceEEEEecCcHHHHHHHHHHhccCC--CeEEEecCCCcHHHhhH-H---HHh-cccccCce
Confidence 35666 44567888888888888898899999999999998885 5777776 874 23321 1 221 11222344
Q ss_pred EECCCCC---CCCCCCCCCcCCC-ChHHHHHHHHHHHCCCcc
Q 029452 97 SFDPLDY---GIPRCTLESLQGG-GPAYNAEVLRRVLSGERG 134 (193)
Q Consensus 97 ~~~p~~~---Gl~~~~~~~l~~~-~~~~~a~~~~~vL~G~~~ 134 (193)
.+-|--| ++...-++-++.+ +....-+..+.|++|+..
T Consensus 147 ~~~P~G~~~l~~~s~l~~vfe~~d~V~h~~~a~~avikde~k 188 (535)
T KOG4435|consen 147 GFYPGGYDNLWLKSMLPSVFENSDDVRHACEAAMAVIKDEKK 188 (535)
T ss_pred eeccCccchHhhhhhchhhhccchHHHHHHHHHHHHhccccc
Confidence 4555332 2222111222223 344445667788888863
No 52
>PF07378 FlbT: Flagellar protein FlbT; InterPro: IPR009967 This family consists of several FlbT proteins. FlbT is a post-transcriptional repressor function in flagellum biogenesis. FlbT is associated with the 5' untranslated region (UTR) of fljK (25 kDa flagellin) mRNA and that this association requires a predicted loop structure in the transcript. Mutations within this loop abolish FlbT association and result in increased mRNA stability. It is therefore thought that FlbT promotes the degradation of flagellin mRNA by associating with the 5' UTR [].; GO: 0048027 mRNA 5'-UTR binding, 0006402 mRNA catabolic process, 0045718 negative regulation of flagellum assembly
Probab=22.56 E-value=3.4e+02 Score=20.44 Aligned_cols=66 Identities=15% Similarity=0.124 Sum_probs=42.1
Q ss_pred ChHHHH-HHHHHHHCCCc--chHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHccHHHHHHHHHHHH
Q 029452 117 GPAYNA-EVLRRVLSGER--GAIADALILNAAAALLVSCKVNTLAEGVALAREIQLSGKALNTLDLWIEV 183 (193)
Q Consensus 117 ~~~~~a-~~~~~vL~G~~--~~~~~~v~lNaA~~L~~~g~~~~i~~g~~~A~e~i~sG~a~~~l~~~~~~ 183 (193)
+|.... =.++-++-|.. +.+.+. ......-|...-..++..+++..|.+++.+|+-|+-|+.++..
T Consensus 49 TP~rrlYf~vQ~m~i~~~~~~~~~~~-~~~~~~~l~~~~~~p~~~~~l~~~~~~v~~g~~y~ALk~~R~L 117 (126)
T PF07378_consen 49 TPLRRLYFAVQLMYIDPEDADEARDL-YRRLLEELLQAFADPDAREGLDEANELVEAGRYYKALKALRKL 117 (126)
T ss_pred CHHHHHHHHHHHHHcCCcChHHHHHH-HHHHHHHHHHHhcCHHHHHHHHHHHHHHHCCcHHHHHHHHHHh
Confidence 443333 33556777653 233333 3333333443344578899999999999999999999888764
No 53
>PF04720 DUF506: Protein of unknown function (DUF506) ; InterPro: IPR006502 This family of uncharacterised plant proteins are defined by a region found toward the C terminus. This region is strongly conserved (greater than 30 % sequence identity between most pairs of members) but flanked by highly divergent regions including stretches of low-complexity sequence.
Probab=22.10 E-value=4.4e+02 Score=21.84 Aligned_cols=52 Identities=29% Similarity=0.420 Sum_probs=33.7
Q ss_pred ChhHHHHHHHHHHHcCCceEEEEee--CCccccCCCCCeEEEEEe-CC----eEEEEEECC
Q 029452 47 NENLVLKMANALQRFGLKRALVVHS--EGLDEMSPLGPGLILDVT-QE----KIERFSFDP 100 (193)
Q Consensus 47 h~~~~~~~a~~~~~lg~~~a~vv~G--eG~dE~s~~~~t~v~~~~-~g----~i~~~~~~p 100 (193)
...+...+++.|+.+|++.+ |.+. ++...+ |.|.-..+.+. .+ ...++.|+|
T Consensus 86 ~~~~rr~v~~~Lr~~GydAa-iCkS~W~~s~~~-p~g~yeyIdV~~~~~~~~~~~r~IVd~ 144 (218)
T PF04720_consen 86 RSCLRRSVMSRLRALGYDAA-ICKSRWESSGGI-PAGEYEYIDVIVSGSSSGKSERYIVDP 144 (218)
T ss_pred hHHHHHHHHHHHHhCCCCEE-EEEecCCCCCCC-CCcceeEEEEEECCCCCCcceeEEEec
Confidence 34466889999999999755 4554 766554 44555544443 22 346888988
No 54
>PRK00304 hypothetical protein; Provisional
Probab=21.68 E-value=67 Score=22.19 Aligned_cols=23 Identities=22% Similarity=0.224 Sum_probs=19.7
Q ss_pred cccCCHHHHHHHHHHHHHccHHH
Q 029452 152 CKVNTLAEGVALAREIQLSGKAL 174 (193)
Q Consensus 152 g~~~~i~~g~~~A~e~i~sG~a~ 174 (193)
|...++++.+++++..|++|+|.
T Consensus 29 g~E~sL~~kv~qv~~qL~~G~~v 51 (75)
T PRK00304 29 GDETPLETRVLRVRQALTKGQAV 51 (75)
T ss_pred cccccHHHHHHHHHHHHHcCCEE
Confidence 44568999999999999999874
No 55
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=21.09 E-value=2.9e+02 Score=19.18 Aligned_cols=12 Identities=17% Similarity=0.155 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHH
Q 029452 157 LAEGVALAREIQ 168 (193)
Q Consensus 157 i~~g~~~A~e~i 168 (193)
.++|++.-.+++
T Consensus 38 ~e~Al~~Ll~~v 49 (90)
T PF14561_consen 38 YEEALDQLLELV 49 (90)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 355555555444
No 56
>PRK00794 flbT flagellar biosynthesis repressor FlbT; Reviewed
Probab=21.00 E-value=3.8e+02 Score=20.38 Aligned_cols=66 Identities=14% Similarity=0.121 Sum_probs=42.6
Q ss_pred ChHHHH-HHHHHHHCCCc--chHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHccHHHHHHHHHHHH
Q 029452 117 GPAYNA-EVLRRVLSGER--GAIADALILNAAAALLVSCKVNTLAEGVALAREIQLSGKALNTLDLWIEV 183 (193)
Q Consensus 117 ~~~~~a-~~~~~vL~G~~--~~~~~~v~lNaA~~L~~~g~~~~i~~g~~~A~e~i~sG~a~~~l~~~~~~ 183 (193)
+|.... =.++-++-+.. +...+...--..-++-+. ..++..+++..+.+++.+|+-|+-|+.++..
T Consensus 51 TP~rrlYf~vQ~mli~~~~~~~~~~~~~~~~~~l~~~~-~~p~~~~~l~~i~~~V~~g~~y~ALk~lR~L 119 (132)
T PRK00794 51 TPLRQLYFIAQLMLIGPAGAEDARAEFARRLEQLLAVF-TDPDILAGLKAIDELVEAGRYYEALKALRGL 119 (132)
T ss_pred ChHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHHHCCcHHHHHHHHHHh
Confidence 444333 33556777753 333444444444444443 3367888999999999999999999988764
No 57
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=20.63 E-value=1.2e+02 Score=23.47 Aligned_cols=36 Identities=19% Similarity=0.365 Sum_probs=27.4
Q ss_pred EEeecChh------HHHHHHHHHHHcCCceEEEEee-C--Ccccc
Q 029452 42 VVGVYNEN------LVLKMANALQRFGLKRALVVHS-E--GLDEM 77 (193)
Q Consensus 42 v~Gv~h~~------~~~~~a~~~~~lg~~~a~vv~G-e--G~dE~ 77 (193)
+|||..+. =++...+.|++.|.+..++..+ + |.+|+
T Consensus 93 vIgvVTK~DLaed~dI~~~~~~L~eaGa~~IF~~s~~d~~gv~~l 137 (148)
T COG4917 93 VIGVVTKADLAEDADISLVKRWLREAGAEPIFETSAVDNQGVEEL 137 (148)
T ss_pred eEEEEecccccchHhHHHHHHHHHHcCCcceEEEeccCcccHHHH
Confidence 88887643 3457778889999998888887 3 77765
No 58
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=20.61 E-value=62 Score=30.05 Aligned_cols=132 Identities=20% Similarity=0.255 Sum_probs=73.9
Q ss_pred hHHHHHHHHHHHcCCceEEEEee---CCccccCCCCCeEEEEEeCCeEEE-E-EEC----CCCCCCCCCC----------
Q 029452 49 NLVLKMANALQRFGLKRALVVHS---EGLDEMSPLGPGLILDVTQEKIER-F-SFD----PLDYGIPRCT---------- 109 (193)
Q Consensus 49 ~~~~~~a~~~~~lg~~~a~vv~G---eG~dE~s~~~~t~v~~~~~g~i~~-~-~~~----p~~~Gl~~~~---------- 109 (193)
+-.+.+.+.|+.|.-+..++|++ -|.-.-.+..|-.++ .++.+.. + .|+ -+.-|+-.+-
T Consensus 63 ~~y~~Iv~~L~~L~dDeTLlVqSGkPVgvFkTh~~APrVlI--aNsnlVp~wanwe~f~el~~~Gl~myGQMTAGsWiYI 140 (561)
T COG2987 63 EAFDAIVETLKNLEDDETLLVQSGKPVGVFKTHKDAPRVLI--ANSNLVPHWANWEHFNELDAKGLTMYGQMTAGSWIYI 140 (561)
T ss_pred HHHHHHHHHHHhccCCceEEEecCCceeEeecCCCCCeEEE--ecCccccccccHHHHHHHHhhhhhheecccccceEEE
Confidence 34567889999999899999995 387655555443322 2322111 0 010 0111111100
Q ss_pred -CCCcCCCChHHHHHHHHHHHCC----C----------cchHHHHHHHHHHHHH----------------HHhcccCCHH
Q 029452 110 -LESLQGGGPAYNAEVLRRVLSG----E----------RGAIADALILNAAAAL----------------LVSCKVNTLA 158 (193)
Q Consensus 110 -~~~l~~~~~~~~a~~~~~vL~G----~----------~~~~~~~v~lNaA~~L----------------~~~g~~~~i~ 158 (193)
..-+.-++=+.-++.-+.-+.| + .++..-++.+|-|+++ |+.-++.|++
T Consensus 141 GtQGIvqGTyeT~~~~~r~h~~gdL~Gk~~lTaGLGGMgGAQplA~~ma~~v~i~vevd~srI~~Rl~t~y~d~~a~~ld 220 (561)
T COG2987 141 GTQGIVQGTYETFAEAGRQHFGGDLKGKWVLTAGLGGMGGAQPLAATMAGAVCIAVEVDESRIDKRLRTGYLDEIAETLD 220 (561)
T ss_pred cccceeechHHHHHHHHHHhcCCCccceEEEecCCCcccccchHHHHhcCceEEEEEeCHHHHHHHHhcchhhhhcCCHH
Confidence 0111123434444444444332 2 2344556677777765 4556788999
Q ss_pred HHHHHHHHHHHccH---------HHHHHHHHHH
Q 029452 159 EGVALAREIQLSGK---------ALNTLDLWIE 182 (193)
Q Consensus 159 ~g~~~A~e~i~sG~---------a~~~l~~~~~ 182 (193)
||+++|++..++|+ |.+-++++.+
T Consensus 221 eAl~~a~~~~~ag~p~SIgl~GNaaei~~~l~~ 253 (561)
T COG2987 221 EALALAEEATAAGEPISIGLLGNAAEILPELLR 253 (561)
T ss_pred HHHHHHHHHHhcCCceEEEEeccHHHHHHHHHH
Confidence 99999999999765 5677777654
No 59
>PRK00907 hypothetical protein; Provisional
Probab=20.49 E-value=1.3e+02 Score=21.43 Aligned_cols=32 Identities=16% Similarity=0.293 Sum_probs=26.9
Q ss_pred hccC-CCCCCceEEeecChhHHHHHHHHHHHcC
Q 029452 31 PMLN-PACVPFAVVGVYNENLVLKMANALQRFG 62 (193)
Q Consensus 31 pLlN-P~~~~~~v~Gv~h~~~~~~~a~~~~~lg 62 (193)
|++. |+.=+..|+|..++++.+.+.++++.-.
T Consensus 10 ~liEFPc~fpiKVmG~a~~~l~~~V~~vv~~h~ 42 (92)
T PRK00907 10 HGFQFPGTFELSAMGTAERGLETELPRLLAATG 42 (92)
T ss_pred ccEecCCCCeEEEEEcCchhHHHHHHHHHHHhC
Confidence 4555 8877899999999999999999998553
No 60
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=20.41 E-value=1.4e+02 Score=25.10 Aligned_cols=48 Identities=17% Similarity=0.396 Sum_probs=30.5
Q ss_pred ccHHHhhhCCCCCchHhhhhccCCCCCCceEEeecChhHHHHHHHHHHHcCCceEEEEeeC
Q 029452 12 FVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHSE 72 (193)
Q Consensus 12 ~l~~~R~~lG~RT~fN~lgpLlNP~~~~~~v~Gv~h~~~~~~~a~~~~~lg~~~a~vv~Ge 72 (193)
-...++++.|++++.|+-. .+ .++.-++.....+..+|.+++++++||
T Consensus 49 ~a~~l~~~~g~~~i~Hlt~------------r~-~n~~~l~~~L~~~~~~Gi~nvL~l~GD 96 (272)
T TIGR00676 49 IVRRIKKETGIPTVPHLTC------------IG-ATREEIREILREYRELGIRHILALRGD 96 (272)
T ss_pred HHHHHHHhcCCCeeEEeee------------cC-CCHHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 3455666667766655433 23 344445555556689999999999994
No 61
>PF07189 SF3b10: Splicing factor 3B subunit 10 (SF3b10); InterPro: IPR009846 This family consists of several eukaryotic splicing factor 3B subunit 5 (SF3b5) proteins. SF3b5 is a 10 kDa subunit of the splicing factor SF3b. SF3b associates with the splicing factor SF3a and a 12S RNA unit to form the U2 small nuclear ribonucleoproteins complex. SF3b5 and SF3b14b are also thought to facilitate the interaction of U2 with the branch site []. Also included in this entry is RDS3 complex subunit 10, another protein involved in mRNA splicing [].
Probab=20.39 E-value=56 Score=22.82 Aligned_cols=19 Identities=37% Similarity=0.683 Sum_probs=15.3
Q ss_pred CCCCchHhhhhccCCCCCC
Q 029452 21 KVKTVFNILGPMLNPACVP 39 (193)
Q Consensus 21 G~RT~fN~lgpLlNP~~~~ 39 (193)
.-|+=+|+|.+|+.|++++
T Consensus 59 ~~r~r~~ll~kM~~p~g~p 77 (79)
T PF07189_consen 59 KARVRFNLLEKMVQPCGPP 77 (79)
T ss_pred HHHHHHHHHHHHhccCCCC
Confidence 3456689999999999864
No 62
>PF06794 UPF0270: Uncharacterised protein family (UPF0270); InterPro: IPR010648 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 1Y0N_A.
Probab=20.38 E-value=57 Score=22.20 Aligned_cols=21 Identities=29% Similarity=0.287 Sum_probs=16.4
Q ss_pred cCCHHHHHHHHHHHHHccHHH
Q 029452 154 VNTLAEGVALAREIQLSGKAL 174 (193)
Q Consensus 154 ~~~i~~g~~~A~e~i~sG~a~ 174 (193)
..++++.+++++..|++|+|.
T Consensus 32 E~sL~~kv~qv~~qL~~G~av 52 (70)
T PF06794_consen 32 ELSLEEKVEQVKQQLKSGEAV 52 (70)
T ss_dssp ---HHHHHHHHHHHHHTTSEE
T ss_pred cccHHHHHHHHHHHHHcCCEE
Confidence 347999999999999999863
No 63
>cd04443 DEP_GPR155 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in GPR155-like proteins. GRP155-like proteins, also known as PGR22, contain an N-terminal permease domain, a central transmembrane region and a C-terminal DEP domain. They are orphan receptors of the class B G protein-coupled receptors. Their function is unknown.
Probab=20.08 E-value=1.5e+02 Score=20.61 Aligned_cols=20 Identities=20% Similarity=0.227 Sum_probs=17.8
Q ss_pred cccCCHHHHHHHHHHHHHcc
Q 029452 152 CKVNTLAEGVALAREIQLSG 171 (193)
Q Consensus 152 g~~~~i~~g~~~A~e~i~sG 171 (193)
|.+.|-+||+.++...++.|
T Consensus 44 ~~~~sR~eAv~lg~~Ll~~G 63 (83)
T cd04443 44 GLAQDRGEAVLYGRRLLQGG 63 (83)
T ss_pred CCCCCHHHHHHHHHHHHHCC
Confidence 56789999999999999987
No 64
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=20.03 E-value=4.8e+02 Score=24.46 Aligned_cols=55 Identities=20% Similarity=0.076 Sum_probs=41.4
Q ss_pred HCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHc------cHHHHHHHHHHHH
Q 029452 129 LSGERGAIADALILNAAAALLVSCKVNTLAEGVALAREIQLS------GKALNTLDLWIEV 183 (193)
Q Consensus 129 L~G~~~~~~~~v~lNaA~~L~~~g~~~~i~~g~~~A~e~i~s------G~a~~~l~~~~~~ 183 (193)
.-|+++|..-++..|-|.+++-.|+.+.-++-++.|.+.... +.+...|..+...
T Consensus 274 ~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~ 334 (508)
T KOG1840|consen 274 VFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAI 334 (508)
T ss_pred hcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHH
Confidence 347888888889999999999999988777777777777655 5555555555443
Done!