Query 029452
Match_columns 193
No_of_seqs 119 out of 1042
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 21:39:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029452.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029452hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4hkm_A Anthranilate phosphorib 100.0 5.3E-54 1.8E-58 374.6 19.4 188 1-188 155-343 (346)
2 1vqu_A Anthranilate phosphorib 100.0 1.7E-52 5.8E-57 368.1 22.9 185 1-185 185-373 (374)
3 1khd_A Anthranilate phosphorib 100.0 9.5E-53 3.2E-57 366.4 20.6 181 1-182 162-343 (345)
4 3r88_A Anthranilate phosphorib 100.0 3.3E-52 1.1E-56 366.6 20.0 186 1-187 176-369 (377)
5 2elc_A Trp D, anthranilate pho 100.0 4.2E-52 1.4E-56 360.4 18.4 180 1-185 148-328 (329)
6 1o17_A Anthranilate PRT, anthr 100.0 1E-51 3.5E-56 359.9 18.5 184 1-186 148-332 (345)
7 3h5q_A PYNP, pyrimidine-nucleo 100.0 2.3E-29 7.9E-34 224.2 12.7 152 1-188 154-323 (436)
8 2dsj_A Pyrimidine-nucleoside ( 99.9 1E-27 3.4E-32 212.9 11.1 149 4-190 154-315 (423)
9 1brw_A PYNP, protein (pyrimidi 99.9 7.2E-27 2.5E-31 208.3 13.4 150 1-190 151-322 (433)
10 1uou_A Thymidine phosphorylase 99.9 2.5E-26 8.7E-31 206.4 15.6 149 1-189 179-349 (474)
11 2tpt_A Thymidine phosphorylase 99.9 4E-27 1.4E-31 210.3 3.6 161 1-190 154-326 (440)
12 1o51_A Hypothetical protein TM 58.2 12 0.00041 26.7 4.1 43 47-89 28-71 (114)
13 2l48_A N-acetylmuramoyl-L-alan 57.0 22 0.00077 24.1 5.0 38 38-75 19-56 (85)
14 2dcl_A Hypothetical UPF0166 pr 45.0 26 0.0009 25.4 4.2 42 47-88 24-66 (127)
15 2gdt_A Leader protein; P65 hom 40.6 14 0.00047 26.3 1.9 22 151-172 18-39 (116)
16 3ma5_A Tetratricopeptide repea 22.1 74 0.0025 20.3 3.1 48 116-168 21-68 (100)
17 2yzt_A Putative uncharacterize 21.6 60 0.0021 20.3 2.4 16 154-169 30-45 (67)
18 2lqc_B Voltage-dependent L-typ 26.4 21 0.0007 18.5 0.0 21 154-174 5-25 (26)
19 3sb1_A Hydrogenase expression 20.8 2.7E+02 0.0092 20.9 6.3 66 57-130 84-158 (160)
20 3ief_A TRNA (guanine-N(1)-)-me 20.5 75 0.0026 25.5 3.2 29 49-79 92-122 (233)
No 1
>4hkm_A Anthranilate phosphoribosyltransferase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; HET: MSE CXS; 1.95A {Xanthomonas campestris PV}
Probab=100.00 E-value=5.3e-54 Score=374.64 Aligned_cols=188 Identities=36% Similarity=0.574 Sum_probs=175.4
Q ss_pred CCCCccCHHhhccHHHhhhCCCCCchHhhhhccCCCCCCceEEeecChhHHHHHHHHHHHcCCceEEEEee-CCccccCC
Q 029452 1 MMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHS-EGLDEMSP 79 (193)
Q Consensus 1 l~ap~~~P~~~~l~~~R~~lG~RT~fN~lgpLlNP~~~~~~v~Gv~h~~~~~~~a~~~~~lg~~~a~vv~G-eG~dE~s~ 79 (193)
+|||.|||+|+++.++|++||+||+||+||||+||+++++|++||||++|.++|+++++.+|.++++|||| ||+||+|+
T Consensus 155 l~a~~~~Pa~k~l~~~R~~lg~rT~fn~lgpL~nPa~~~~~v~Gv~~~~~~~~~a~~l~~lg~~~a~vv~g~~G~dEis~ 234 (346)
T 4hkm_A 155 MYAPVHHPAMKVVAPVRREMGVRTIFNILGPLTNPAGSPNILMGVFHPDLVGIQARVLQELGAERALVVWGRDGMDELSL 234 (346)
T ss_dssp ECHHHHCGGGGGTHHHHHHHCSCCTHHHHGGGCCTTCCSEEEEECSSTHHHHHHHHHHHHTTCSEEEEEEETTTBSSCCS
T ss_pred hchhhhChhHHHHhhheeccCCCchhhhcccccCCCCCcceEeeccCHHHhHHHHHHHHHcCCCeEEEEecCCCchhhhh
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred CCCeEEEEEeCCeEEEEEECCCCCCCCCCCCCCcCCCChHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHHhcccCCHHH
Q 029452 80 LGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERGAIADALILNAAAALLVSCKVNTLAE 159 (193)
Q Consensus 80 ~~~t~v~~~~~g~i~~~~~~p~~~Gl~~~~~~~l~~~~~~~~a~~~~~vL~G~~~~~~~~v~lNaA~~L~~~g~~~~i~~ 159 (193)
.++|.|+++++|++.+++++|+|||++..+++++.++|+++|+++++++|+|+.++.+|.|++|||++||++|+++|++|
T Consensus 235 ~~~t~v~~~~~g~i~~~~i~P~d~Gl~~~~~~~~~~g~~~e~a~~~~~vl~g~~~~~~d~v~lnaa~~L~~~g~a~sl~e 314 (346)
T 4hkm_A 235 GAGTLVGELRDGQVHEYEVHPEDFGIAMSASRNLKVADAAESRAMLLQVLDNVPGPALDIVALNAGAALYVAGVADSIAD 314 (346)
T ss_dssp SSCEEEEEEETTEEEEEEECGGGGTCCCCC---------CCHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHTTSSSSHHH
T ss_pred ccCceEEEEeCCceeEecCCHHHcCCccCcccccCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHcCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHccHHHHHHHHHHHHhcCCC
Q 029452 160 GVALAREIQLSGKALNTLDLWIEVSKGAP 188 (193)
Q Consensus 160 g~~~A~e~i~sG~a~~~l~~~~~~~~~~~ 188 (193)
|+++|+++|+||+|+++|++|++++|+..
T Consensus 315 g~~~A~~~l~sG~A~~~l~~~i~~s~~~~ 343 (346)
T 4hkm_A 315 GIVRARQVLADGSARACLDAYVAFTQQAT 343 (346)
T ss_dssp HHHHHHHHHHTSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999998754
No 2
>1vqu_A Anthranilate phosphoribosyltransferase 2; 17130499, structur genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI; 1.85A {Nostoc SP}
Probab=100.00 E-value=1.7e-52 Score=368.10 Aligned_cols=185 Identities=33% Similarity=0.530 Sum_probs=180.3
Q ss_pred CCCCccCHHhhccHHHhhhCCCCCchHhhhhccCCCCCCceEEeecChhHHHHHHHHHHHcCCceEEEEee-CCccccCC
Q 029452 1 MMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHS-EGLDEMSP 79 (193)
Q Consensus 1 l~ap~~~P~~~~l~~~R~~lG~RT~fN~lgpLlNP~~~~~~v~Gv~h~~~~~~~a~~~~~lg~~~a~vv~G-eG~dE~s~ 79 (193)
||||.|||+|+++.++|++||+||+||+||||+||+++++||+||||++|.++|+++++.+|.++++|||| ||+||+++
T Consensus 185 l~a~~~hPa~k~l~~~R~~lg~rTvfNilgpL~NPa~~~~qv~GV~~~~~~~~~a~~l~~lG~~~alVv~G~~G~dE~s~ 264 (374)
T 1vqu_A 185 LFAPGWHPALKAVATLRRTLRIRTVFNLLGPLVNPLRPTGQVVGLFTPKLLTTVAQALDNLGKQKAIVLHGRERLDEAGL 264 (374)
T ss_dssp EEETTSSGGGGGGHHHHHHHCSCCHHHHHGGGCCTTCCSEEEEECSCGGGHHHHHHHHHHTTCSEEEEEEETTTBSSCCS
T ss_pred EEhHHhCHHHHHHHHHHHHhCCCCHHHHHHHhcCCCCCCceEEeecCHHHHHHHHHHHHHcCCCeEEEEECCCCcccccc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred CCCeEEEEEeCCeEEEEEECCCCCCCCCCCCCCcCCCChHHHHHHHHHHHCCCcchHHH-HHHHHHHHHHHHhcccC--C
Q 029452 80 LGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERGAIAD-ALILNAAAALLVSCKVN--T 156 (193)
Q Consensus 80 ~~~t~v~~~~~g~i~~~~~~p~~~Gl~~~~~~~l~~~~~~~~a~~~~~vL~G~~~~~~~-~v~lNaA~~L~~~g~~~--~ 156 (193)
.++|.|+++++|++++++|+|++||++..+++++.++++++|+++++++|+|+.+|++| +|++|||++||++|+++ |
T Consensus 265 ~~~t~v~~~~~g~~~~~~i~p~d~Gl~~~~~~~l~~g~~~e~a~~~~~vL~G~~~~~~d~~v~~naa~~L~~~g~~~~~~ 344 (374)
T 1vqu_A 265 GDLTDLAVLSDGELQLTTINPQEVGVTPAPIGALRGGDVQENAEILKAVLQGKGTQAQQDAVALNAALALQVAGAVPLLD 344 (374)
T ss_dssp SSCEEEEEEETTEEEEEEECGGGGTCCCCCGGGGBCCSHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTSSCTTC
T ss_pred CCceEEEEEeCCEEEEEEECHHHCCCccccccccCCCCHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHHHhcCCCCCCC
Confidence 99999999999999999999999999998888999999999999999999999778999 99999999999999999 9
Q ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHhc
Q 029452 157 LAEGVALAREIQLSGKALNTLDLWIEVSK 185 (193)
Q Consensus 157 i~~g~~~A~e~i~sG~a~~~l~~~~~~~~ 185 (193)
+++|+++|+++|+||+|+++|++|+++++
T Consensus 345 ~~eg~~~A~~~i~sG~A~~~l~~~v~~~~ 373 (374)
T 1vqu_A 345 HAQGVSVAKEILQTGTAWAKLAQLVYFLG 373 (374)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHhc
Confidence 99999999999999999999999998875
No 3
>1khd_A Anthranilate phosphoribosyltransferase; type 3 PRT fold, nucleotide binding fold; 1.86A {Pectobacterium carotovorum} SCOP: a.46.2.1 c.27.1.1 PDB: 1kgz_A
Probab=100.00 E-value=9.5e-53 Score=366.39 Aligned_cols=181 Identities=36% Similarity=0.630 Sum_probs=176.9
Q ss_pred CCCCccCHHhhccHHHhhhCCCCCchHhhhhccCCCCCCceEEeecChhHHHHHHHHHHHcCCceEEEEeeCCccccCCC
Q 029452 1 MMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHSEGLDEMSPL 80 (193)
Q Consensus 1 l~ap~~~P~~~~l~~~R~~lG~RT~fN~lgpLlNP~~~~~~v~Gv~h~~~~~~~a~~~~~lg~~~a~vv~GeG~dE~s~~ 80 (193)
||||.|||+|+++.++|++||+||+||+||||+||+++++||+|||||++.++|+++++.+|.++++||||||+||+|++
T Consensus 162 l~a~~~hPa~k~l~~~R~~Lg~rTvfn~lgpL~nPa~~~~~v~GV~~~~~~~~~a~~l~~lG~~~a~vv~GdG~dEis~~ 241 (345)
T 1khd_A 162 LFAPQYHTGFRHAMPVRQQLKTRTIFNVLGPLINPARPPKALIGVYSPELVLPIAQALKVLGYKNAAVVHGGGMDEVAIH 241 (345)
T ss_dssp EEHHHHCGGGGGGHHHHHHHCSCCTHHHHGGGCCTTCCSEEEEECSSGGGHHHHHHHHHHTTCSEEEEEEETTBSSCCSS
T ss_pred EehhhhCHHHHHHHHHHHHhCCCCHHHHHHHhcCCcCCCeEEEeecCHHHHHHHHHHHHHhCCCeEEEEeCCCcceecCC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEeCCeEEEEEECCCCCCCCCCCCCCcCCCChHHHHHHHHHHHCCCcc-hHHHHHHHHHHHHHHHhcccCCHHH
Q 029452 81 GPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERG-AIADALILNAAAALLVSCKVNTLAE 159 (193)
Q Consensus 81 ~~t~v~~~~~g~i~~~~~~p~~~Gl~~~~~~~l~~~~~~~~a~~~~~vL~G~~~-~~~~~v~lNaA~~L~~~g~~~~i~~ 159 (193)
++|+|+++++|++++|+|+|++||+++.+++++.++|+++|+++++++|+|+.+ +++|+|++|||++||++|+ +|+++
T Consensus 242 ~~t~v~~~~~g~i~~~~i~p~~~G~~~~~~~~l~~g~~~e~a~~~~~vL~G~~~~~~~d~v~~naa~~L~~~g~-~~~~e 320 (345)
T 1khd_A 242 TPTQVAELNNGEIESYQLSPQDFGLQSYSLNALQGGTPEENRDILARLLQGKGDAAHARQVAANVALLLKLFGQ-DNLRH 320 (345)
T ss_dssp SCEEEEEEETTEEEEEEECGGGGTCCCBCGGGGBCCSHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTTTC-CCHHH
T ss_pred CceEEEEEeCCEEEEEEECHHHcCCCcCCccccCCCCHHHHHHHHHHHHCCCCCccHHHHHHHHHHHHHHHcCC-CCHHH
Confidence 999999999999999999999999999999999999999999999999999965 8999999999999999999 99999
Q ss_pred HHHHHHHHHHccHHHHHHHHHHH
Q 029452 160 GVALAREIQLSGKALNTLDLWIE 182 (193)
Q Consensus 160 g~~~A~e~i~sG~a~~~l~~~~~ 182 (193)
|+++|+++|+||+|+++|++|++
T Consensus 321 g~~~A~~~i~sG~A~~~l~~~~~ 343 (345)
T 1khd_A 321 NAQLALETIRSGTAFERVTALAA 343 (345)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCHHHHHHHHHHh
Confidence 99999999999999999999975
No 4
>3r88_A Anthranilate phosphoribosyltransferase; anthranilic acids, M tryptophan, inhibitor, magnesium binding phosp pyrophosphate; HET: PRP 14F; 1.73A {Mycobacterium tuberculosis} PDB: 3qqs_A 3qs8_A* 3qsa_A* 3qr9_A* 3r6c_A* 3twp_A* 1zvw_A* 2bpq_A
Probab=100.00 E-value=3.3e-52 Score=366.63 Aligned_cols=186 Identities=32% Similarity=0.579 Sum_probs=179.7
Q ss_pred CCCCccCHHhhccHHHhhhCCCCCchHhhhhccCCCCCCceEEeecChhHHHHHHHHHHHcCCceEEEEee-CCccccCC
Q 029452 1 MMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHS-EGLDEMSP 79 (193)
Q Consensus 1 l~ap~~~P~~~~l~~~R~~lG~RT~fN~lgpLlNP~~~~~~v~Gv~h~~~~~~~a~~~~~lg~~~a~vv~G-eG~dE~s~ 79 (193)
||||.|||+|+++.++|++||+||+||++|||+||+++++||+||||+++.++|+++++.+| ++++|||| ||+||+++
T Consensus 176 l~a~~~hPa~k~l~~vR~~Lg~rTifN~lgpL~NPa~~~~~liGv~~~~l~~~~a~~l~~~~-~~a~vv~G~dGlDEis~ 254 (377)
T 3r88_A 176 CFAPRFHPSYRHAAAVRREIGVPTVFNLLGPLTNPARPRAGLIGCAFADLAEVMAGVFAARR-SSVLVVHGDDGLDELTT 254 (377)
T ss_dssp EEHHHHCGGGHHHHHHHHHHCSCCGGGGHHHHCCTTCCSEEEEECSCTTTHHHHHHHHHHTT-CEEEEEEETTSCSSCCS
T ss_pred ccchhhCHHHHHHHHHHHHhccCchhhhHHHhcCcccccccccCCCCHHHhHHHHHHHHhcC-CeeEEecCCCCCceeec
Confidence 58999999999999999999999999999999999999999999999999999999999998 58999999 99999999
Q ss_pred CCCeEEEEEeCCeEEEEEECCCCCCCCCCCCCCcCCCChHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHHhccc-----
Q 029452 80 LGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERGAIADALILNAAAALLVSCKV----- 154 (193)
Q Consensus 80 ~~~t~v~~~~~g~i~~~~~~p~~~Gl~~~~~~~l~~~~~~~~a~~~~~vL~G~~~~~~~~v~lNaA~~L~~~g~~----- 154 (193)
.++|.|+++++|++++++++|+|||+++.+++++.++|+++|++++++||+|+.+|.+|.|++|||++||+.|..
T Consensus 255 ~~~t~v~~~~~g~i~~~~i~P~d~Gl~~~~~~~l~gg~~~ena~~~~~vL~G~~~~~~d~v~lNaa~~l~~~g~~~~~~~ 334 (377)
T 3r88_A 255 TTTSTIWRVAAGSVDKLTFDPAGFGFARAQLDQLAGGDAQANAAAVRAVLGGARGPVRDAVVLNAAGAIVAHAGLSSRAE 334 (377)
T ss_dssp SSCEEEEEEETTEEEEEEECGGGGTCCCCCGGGGBCCSHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHHTTC--CC
T ss_pred ccccceEEEeeceeEEEeccccccCCCcCCHHhccCCCHHHHHHHHHHHHCCCCcHHHHHHHHHHHHHHHHhcCcccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998764
Q ss_pred --CCHHHHHHHHHHHHHccHHHHHHHHHHHHhcCC
Q 029452 155 --NTLAEGVALAREIQLSGKALNTLDLWIEVSKGA 187 (193)
Q Consensus 155 --~~i~~g~~~A~e~i~sG~a~~~l~~~~~~~~~~ 187 (193)
.|++||+++|+++|+||+|+++|++|++++|+.
T Consensus 335 ~~~sl~eG~~~A~e~l~sG~A~~kl~~~i~~s~~~ 369 (377)
T 3r88_A 335 WLPAWEEGLRRASAAIDTGAAEQLLARWVRFGRQI 369 (377)
T ss_dssp HHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHTC
T ss_pred ccCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Confidence 379999999999999999999999999999874
No 5
>2elc_A Trp D, anthranilate phosphoribosyltransferase; structural genomics, NPPSFA, national project O structural and functional analyses; 1.55A {Thermus thermophilus} SCOP: a.46.2.1 c.27.1.1 PDB: 1v8g_A
Probab=100.00 E-value=4.2e-52 Score=360.38 Aligned_cols=180 Identities=44% Similarity=0.751 Sum_probs=174.4
Q ss_pred CCCCccCHHhhccHHHhhhCCCCCchHhhhhccCCCCCCceEEeecChhHHHHHHHHHHHcCCceEEEEeeCCccccCCC
Q 029452 1 MMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHSEGLDEMSPL 80 (193)
Q Consensus 1 l~ap~~~P~~~~l~~~R~~lG~RT~fN~lgpLlNP~~~~~~v~Gv~h~~~~~~~a~~~~~lg~~~a~vv~GeG~dE~s~~ 80 (193)
||||.|||+|+++.++|++||+||+||+||||+||+++++||+||||++|.++|+++++.+| ++++||||||+||++ .
T Consensus 148 l~a~~~hPa~k~~~~~R~~lg~rTvfn~lgpL~nPa~~~~~v~Gv~~~~~~~~~a~~l~~lG-~~alVv~G~G~dE~~-~ 225 (329)
T 2elc_A 148 LFARVFHPAMRHVAPVRAELGVRTVFNLLGPLTNPAGADAYVLGVFSPEWLAPMAEALERLG-ARGLVVHGEGADELV-L 225 (329)
T ss_dssp EEHHHHCGGGGGTHHHHHHHCSCCHHHHHTTTCCTTCCCEEEEECSSGGGHHHHHHHHHHTT-CEEEEEEETTBSSCC-S
T ss_pred EEhHHhCHHHHHHHHHHHHhCCCCHHHHHHHhcCccCCceeEEeeeCHHHHHHHHHHHHHcC-CCEEEEeCCChhhhc-c
Confidence 58999999999999999999999999999999999999999999999999999999999999 999999999999999 9
Q ss_pred CCeEEEEEeCCeEEEEEECCCCCCCCCCCCCCcCCCChHHHHHHHHHHHCCCc-chHHHHHHHHHHHHHHHhcccCCHHH
Q 029452 81 GPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGER-GAIADALILNAAAALLVSCKVNTLAE 159 (193)
Q Consensus 81 ~~t~v~~~~~g~i~~~~~~p~~~Gl~~~~~~~l~~~~~~~~a~~~~~vL~G~~-~~~~~~v~lNaA~~L~~~g~~~~i~~ 159 (193)
++|.|+++++|+ ++++|++||++..+++++.++|+++|+++++++|+|+. +|++|+|++|||++||++|+++|+++
T Consensus 226 ~~t~v~~~~~g~---~~i~p~~~G~~~~~~~~l~~g~~~e~a~~~~~vL~G~~~~~~~d~v~~naa~~L~~~g~~~~~~~ 302 (329)
T 2elc_A 226 GENRVVEVGKGA---YALTPEEVGLKRAPLEALKGGGPEENAALARRLLKGEEKGPLADAVALAAGAGFYAAGKTPSLKE 302 (329)
T ss_dssp SCEEEEETTTEE---EEECGGGGTCCCCCGGGGCCCSHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHTTSSSSHHH
T ss_pred CCeEEEEEECCE---EEECHHHcCCccCCcccCCCCCHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHHHcCCCCCHHH
Confidence 999999988776 88999999999989999999999999999999999996 78999999999999999999999999
Q ss_pred HHHHHHHHHHccHHHHHHHHHHHHhc
Q 029452 160 GVALAREIQLSGKALNTLDLWIEVSK 185 (193)
Q Consensus 160 g~~~A~e~i~sG~a~~~l~~~~~~~~ 185 (193)
|+++|+++|+||+|+++|++|+++++
T Consensus 303 g~~~A~~~i~sG~A~~~l~~~~~~~~ 328 (329)
T 2elc_A 303 GVALAREVLASGEAYLLLERYVAFLR 328 (329)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHhc
Confidence 99999999999999999999998875
No 6
>1o17_A Anthranilate PRT, anthranilate phosphoribosyltransferase, TRPD; nucleoside-phosphorylases; 2.05A {Sulfolobus solfataricus} SCOP: a.46.2.1 c.27.1.1 PDB: 1gxb_A 1zxy_A* 1zyk_A* 2gvq_A* 3gbr_A*
Probab=100.00 E-value=1e-51 Score=359.91 Aligned_cols=184 Identities=29% Similarity=0.509 Sum_probs=179.4
Q ss_pred CCCCccCHHhhccHHHhhhCCCCCchHhhhhccCCCCCCceEEeecChhHHHHHHHHHHHcCCceEEEEee-CCccccCC
Q 029452 1 MMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHS-EGLDEMSP 79 (193)
Q Consensus 1 l~ap~~~P~~~~l~~~R~~lG~RT~fN~lgpLlNP~~~~~~v~Gv~h~~~~~~~a~~~~~lg~~~a~vv~G-eG~dE~s~ 79 (193)
||||.|||+|+++.++|++||+||+||+||||+||+++++||+||||++|.++++++++.+|.++++|||| ||+||+++
T Consensus 148 l~a~~~hPa~k~l~~~R~~lg~rTvfN~lgpL~nPa~~~~ql~Gv~~~~~~~~~A~~l~~lG~~~alVv~G~~G~dE~s~ 227 (345)
T 1o17_A 148 LFAQYYHPAMKNVANVRKTLGIRTIFNILGPLTNPANAKYQLMGVFSKDHLDLLSKSAYELDFNKIILVYGEPGIDEVSP 227 (345)
T ss_dssp EEHHHHCGGGGGTHHHHHHHCSCCGGGGCGGGCCTTCCSEEEEECSSHHHHHHHHHHHTTSCCSEEEEEEETTTBSSCCS
T ss_pred EehHHhChHHHHHHHHHHHhCCCCHHHHHHHhcCccCCCeEEEEeeCHHHHHHHHHHHHHcCCCeEEEEECCCCHHHhcc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred CCCeEEEEEeCCeEEEEEECCCCCCCCCCCCCCcCCCChHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHHhcccCCHHH
Q 029452 80 LGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERGAIADALILNAAAALLVSCKVNTLAE 159 (193)
Q Consensus 80 ~~~t~v~~~~~g~i~~~~~~p~~~Gl~~~~~~~l~~~~~~~~a~~~~~vL~G~~~~~~~~v~lNaA~~L~~~g~~~~i~~ 159 (193)
.++|.|+++++|+++++.|+|+|||+++.+++++.++|+++|+++++++|+|+.+|++|.|++|||++||++|+++|+++
T Consensus 228 ~~~t~v~~~~~g~~~~~~i~p~d~Gl~~~~~~~l~~g~~~e~a~~~~~vL~G~~~~~~d~v~~naa~~L~~~g~~~~~~e 307 (345)
T 1o17_A 228 IGNTFMKIVSKRGIEEVKLNVTDFGISPIPIEKLIVNSAEDSAIKIVRAFLGKDEHVAEFIKINTAVALFALDRVGDFRE 307 (345)
T ss_dssp SSEEEEEEEETTEEEEEEEEGGGGTCCCCCGGGTBCSSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTSSSSHHH
T ss_pred cCCcEEEEEeCCeEEEEEEChhhcCCCCCChhccCCCCHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHcCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999998788999999999999999999999999
Q ss_pred HHHHHHHHHHccHHHHHHHHHHHHhcC
Q 029452 160 GVALAREIQLSGKALNTLDLWIEVSKG 186 (193)
Q Consensus 160 g~~~A~e~i~sG~a~~~l~~~~~~~~~ 186 (193)
|+++|+++|+ +|+++|++|+++++.
T Consensus 308 g~~~A~~~i~--~A~~~l~~~~~~~~~ 332 (345)
T 1o17_A 308 GYEYADHLIE--KSLDKLNEIISMNGD 332 (345)
T ss_dssp HHHHHHHHHT--THHHHHHHHHHHSBC
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHhCC
Confidence 9999999999 999999999998764
No 7
>3h5q_A PYNP, pyrimidine-nucleoside phosphorylase; structural genomics, glycosyltransferase, transferase; HET: MSE THM; 1.94A {Staphylococcus aureus}
Probab=99.96 E-value=2.3e-29 Score=224.16 Aligned_cols=152 Identities=24% Similarity=0.271 Sum_probs=140.5
Q ss_pred CC-CCccCHHhhccHHHhhhCCCCCchHhhhhccC--------CCCCCceEEeec--------ChhHHHHHHHHHHHcCC
Q 029452 1 MM-STKYHPAMKFVRPVRKKLKVKTVFNILGPMLN--------PACVPFAVVGVY--------NENLVLKMANALQRFGL 63 (193)
Q Consensus 1 l~-ap~~~P~~~~l~~~R~~lG~RT~fN~lgpLlN--------P~~~~~~v~Gv~--------h~~~~~~~a~~~~~lg~ 63 (193)
|| +|.|||+|+++.++|++ +||+||+ ||+| |++++++|+||| +++..+.+++++..+|.
T Consensus 154 l~~a~~~~Pa~~~l~~lR~~--~~Tvfni--PLinaSimSKKlpag~~~~vlgV~~G~gaf~~~~~~a~~lA~~l~~lG~ 229 (436)
T 3h5q_A 154 VGQSGNLTPADKKLYALRDV--TGTVNSI--PLIASSIMSKKIAAGADAIVLDVKTGSGAFMKTLEDAEALAHAMVRIGN 229 (436)
T ss_dssp ECCCSSSCHHHHHHHHHHHT--TTCSSCH--HHHHHHHHHHHHHTTCSEEEEEEEESTTSSBCSHHHHHHHHHHHHHHHH
T ss_pred EccccccCHHHHHHHHHHhc--cCCcCCh--hhhccchhccccccCCCeEEEeeecCccccCCCHHHHHHHHHHHHHhhh
Confidence 35 79999999999999999 7999999 9999 999999999999 99999999999999997
Q ss_pred ceEEEEeeCCccccCCCCCeEEEEEeCCeEEEEEECCCCCCCCCCCCCCcCCCChHHHHHHHHHHHCCC-cchHHHHHHH
Q 029452 64 KRALVVHSEGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGE-RGAIADALIL 142 (193)
Q Consensus 64 ~~a~vv~GeG~dE~s~~~~t~v~~~~~g~i~~~~~~p~~~Gl~~~~~~~l~~~~~~~~a~~~~~vL~G~-~~~~~~~v~l 142 (193)
++ |+|++++++++. +| ||+. ++++.||++ ++++|+|+ .++++|.|++
T Consensus 230 ~~---------------G~~~v~~lt~~~------~P--lG~~--------~G~~~E~ae-~~~vL~G~~~~~~~d~vl~ 277 (436)
T 3h5q_A 230 NV---------------GRNTMAIISDMN------QP--LGRA--------IGNALELQE-AIDTLKGQGPKDLTELVLT 277 (436)
T ss_dssp HH---------------TCCEEEEEEECS------SC--SSSE--------EESHHHHHH-HHHHHTTCSCHHHHHHHHH
T ss_pred hc---------------CCeEEEEEcCCC------CC--CCCC--------CCCHHHHHH-HHHHHCCCCCccHHHHHHH
Confidence 53 899999998876 56 7773 678999999 99999999 5789999999
Q ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHHccHHHHHHHHHHHHhcCCC
Q 029452 143 NAAAALLVSCKVNTLAEGVALAREIQLSGKALNTLDLWIEVSKGAP 188 (193)
Q Consensus 143 NaA~~L~~~g~~~~i~~g~~~A~e~i~sG~a~~~l~~~~~~~~~~~ 188 (193)
|||.+||++|+++|+++|+++|+++|+||+|+++|++|++.+...+
T Consensus 278 nAa~~L~~ag~a~~~~eg~~~A~~~i~sG~A~~~l~~~v~~qGg~~ 323 (436)
T 3h5q_A 278 LGSQMVVLANKAETLEEARALLIEAINSGAALEKFKTFIKNQGGDE 323 (436)
T ss_dssp HHHHHHHHTTSCSSHHHHHHHHHHHHHTSHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHhcCCcCCHHHHHHHHHHHHhCcHHHHHHHHHHHHhCCCc
Confidence 9999999999999999999999999999999999999999987654
No 8
>2dsj_A Pyrimidine-nucleoside (thymidine) phosphorylase; pyrimidine-nucleoside phosphorylase, structural genomics; 1.80A {Thermus thermophilus}
Probab=99.95 E-value=1e-27 Score=212.90 Aligned_cols=149 Identities=21% Similarity=0.244 Sum_probs=132.3
Q ss_pred CccCHHhhccHHHhhhCC-CCCchHhhhhccC---CCCCCceEE------eec--ChhHHHHHHHHHHHcCCceEEEEee
Q 029452 4 TKYHPAMKFVRPVRKKLK-VKTVFNILGPMLN---PACVPFAVV------GVY--NENLVLKMANALQRFGLKRALVVHS 71 (193)
Q Consensus 4 p~~~P~~~~l~~~R~~lG-~RT~fN~lgpLlN---P~~~~~~v~------Gv~--h~~~~~~~a~~~~~lg~~~a~vv~G 71 (193)
|.|||+|+++.++|+++| +||+||+++||+| |+++++||+ |+| ++++.+.+++++..+|.+
T Consensus 154 ~~~~PA~k~l~~lR~~lgtv~Ti~nilgpl~nkK~pag~~~~vldV~~G~Gaf~~~~~~~~~lA~~l~~lg~~------- 226 (423)
T 2dsj_A 154 PDLAPLDGKLYALRDVTATVESVPLIASSIMSKKLAAGARSIVLDVKVGRGAFMKTLEEARLLAKTMVAIGQG------- 226 (423)
T ss_dssp GGBSHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHTCSEEEEEEEESSSTTCBCHHHHHHHHHHHHHHHHH-------
T ss_pred cccChHHHHHHHHHHHhcccCcHHHhHHHHhcCccCCCCCeEEEEeccCCCcccCCHHHHHHHHHHHHHHHHH-------
Confidence 599999999999999999 8999999999999 999999999 779 999999999999999863
Q ss_pred CCccccCCCCCeEEEEEeCCeEEEEEECCCCCCCCCCCCCCcCCCChHHHHHHHHHHHCCCc-chHHHHHHHHHHHHHHH
Q 029452 72 EGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGER-GAIADALILNAAAALLV 150 (193)
Q Consensus 72 eG~dE~s~~~~t~v~~~~~g~i~~~~~~p~~~Gl~~~~~~~l~~~~~~~~a~~~~~vL~G~~-~~~~~~v~lNaA~~L~~ 150 (193)
.|+|+++++++|. +.+|+ .++++++|+++++ +|+|+. .+++|.|++|||.+||+
T Consensus 227 --------~G~~~v~~l~dg~--------~plg~--------~~G~a~E~ae~i~-vL~G~g~~~~~d~vl~nAa~~L~~ 281 (423)
T 2dsj_A 227 --------AGRRVRALLTSME--------APLGR--------AVGNAIEVREAIE-ALKGEGPGDLLEVALALAEEALRL 281 (423)
T ss_dssp --------TTCEEEEEEEECS--------SCSSS--------EEESHHHHHHHHH-HHTTCSCHHHHHHHHHHHHHHHHH
T ss_pred --------cCCeEEEEEcCCC--------Ccccc--------cCCCHHHHHHHHH-HHCCCCchhHHHHHHHHHHHHHHH
Confidence 2688899888775 23443 4679999999995 999984 46799999999999999
Q ss_pred hcccCCHHHHHHHHHHHHHccHHHHHHHHHHHHhcCCCCc
Q 029452 151 SCKVNTLAEGVALAREIQLSGKALNTLDLWIEVSKGAPAF 190 (193)
Q Consensus 151 ~g~~~~i~~g~~~A~e~i~sG~a~~~l~~~~~~~~~~~~~ 190 (193)
+|+ |+ ++|+++|+||+|+++|++|+++++.++-+
T Consensus 282 ag~--~l----~~A~~~l~sG~A~~kl~~li~~~~g~~~~ 315 (423)
T 2dsj_A 282 EGL--DP----ALARKALEGGAALEKFRAFLEAQGGDPRA 315 (423)
T ss_dssp TTC--CT----HHHHHHHHTSHHHHHHHHHHHHTTCCGGG
T ss_pred cCC--CH----HHHHHHHhcCcHHHHHHHHHHHhCCChhh
Confidence 998 66 89999999999999999999999877554
No 9
>1brw_A PYNP, protein (pyrimidine nucleoside phosphorylase); domain movement, transferase; HET: MES; 2.10A {Geobacillus stearothermophilus} SCOP: a.46.2.1 c.27.1.1 d.41.3.1
Probab=99.94 E-value=7.2e-27 Score=208.28 Aligned_cols=150 Identities=20% Similarity=0.265 Sum_probs=132.2
Q ss_pred CCC-CccCHHhhccHHHhhhCCCCCchHhhhhccCC--------CCCCceEEee------c------ChhHHHHHHHHHH
Q 029452 1 MMS-TKYHPAMKFVRPVRKKLKVKTVFNILGPMLNP--------ACVPFAVVGV------Y------NENLVLKMANALQ 59 (193)
Q Consensus 1 l~a-p~~~P~~~~l~~~R~~lG~RT~fN~lgpLlNP--------~~~~~~v~Gv------~------h~~~~~~~a~~~~ 59 (193)
||| |.|||+|+++.++|+++ ||+||+ ||+|| .+++++|+|| | ++.+.+.+.++++
T Consensus 151 l~a~~~~hPA~k~l~~lR~~l--rTvfNi--PLin~s~lskklA~G~~~~VlgVk~G~gaf~~~~de~~~l~~~~v~~~~ 226 (433)
T 1brw_A 151 IGQTGDLTPADKKLYALRDVT--ATVNSI--PLIASSIMSKKIAAGADAIVLDVKTGAGAFMKKLDEARRLARVMVDIGK 226 (433)
T ss_dssp EECCTTSCHHHHHHHHHHHHH--TCCCCH--HHHHHHHHHHHHHHCCSEEEEEEEESTTSSCCSHHHHHHHHHHHHHHHH
T ss_pred ecCchhhCHHHHHHHHHHHhh--CCccCh--hhcCcHhhHHHHhcCCCEEEEEeecccccccCCHHHHHHHHHHHHHHHH
Confidence 478 59999999999999999 899999 99999 6788999999 8 8999999999999
Q ss_pred HcCCceEEEEeeCCccccCCCCCeEEEEEeCCeEEEEEECCCCCCCCCCCCCCcCCCChHHHHHHHHHHHCCCc-chHHH
Q 029452 60 RFGLKRALVVHSEGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGER-GAIAD 138 (193)
Q Consensus 60 ~lg~~~a~vv~GeG~dE~s~~~~t~v~~~~~g~i~~~~~~p~~~Gl~~~~~~~l~~~~~~~~a~~~~~vL~G~~-~~~~~ 138 (193)
.+|.++..++++ ++ +.+|. .++++.+|++. +++|+|+. .+++|
T Consensus 227 ~~G~~~~~~i~~--~~-------------------------~plg~--------~~G~a~E~a~~-~~vL~G~g~~~~~d 270 (433)
T 1brw_A 227 RVGRRTMAVISD--MS-------------------------QPLGY--------AVGNALEVKEA-IETLKGNGPHDLTE 270 (433)
T ss_dssp HTTCEEEEEEEE--CS-------------------------SCSSS--------EESSHHHHHHH-HHHHTTCSCHHHHH
T ss_pred HcCCEEEEEEcC--CC-------------------------Ccccc--------cCCCHHHHHHH-HHHHCCCCChhHHH
Confidence 999988888884 11 12332 25789999966 99999984 35799
Q ss_pred HHHHHHHHHHHHhcccCCHHHHHHHHHHHHHccHHHHHHHHHHHHhcCCCCc
Q 029452 139 ALILNAAAALLVSCKVNTLAEGVALAREIQLSGKALNTLDLWIEVSKGAPAF 190 (193)
Q Consensus 139 ~v~lNaA~~L~~~g~~~~i~~g~~~A~e~i~sG~a~~~l~~~~~~~~~~~~~ 190 (193)
.|++|||++||++|+++|+++|+++|+++|+||+|+++|++|+++++..+.+
T Consensus 271 ~vl~nAa~~L~~~g~a~~~~eg~~~A~~~i~sG~A~~kl~~~i~~~~g~~~~ 322 (433)
T 1brw_A 271 LCLTLGSHMVYLAEKAPSLDEARRLLEEAIRSGAAIAAFKTFLAAQGGDASV 322 (433)
T ss_dssp HHHHHHHHHHHHTTSSSSHHHHHHHHHHHHHHTHHHHHHHHHHHHTTCCGGG
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcChHHHHHHHHHHHhCCChhH
Confidence 9999999999999999999999999999999999999999999999877654
No 10
>1uou_A Thymidine phosphorylase; transferase, glycosyltransferase, chemotaxis, angiogenesis; HET: CMU; 2.11A {Homo sapiens} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 2wk6_A 2wk5_A 2j0f_A
Probab=99.94 E-value=2.5e-26 Score=206.40 Aligned_cols=149 Identities=21% Similarity=0.258 Sum_probs=132.1
Q ss_pred CCC-CccCHHhhccHHHhhhCCCCCchHhhhhccCC--------CCCCceEEee------c------ChhHHHHHHHHHH
Q 029452 1 MMS-TKYHPAMKFVRPVRKKLKVKTVFNILGPMLNP--------ACVPFAVVGV------Y------NENLVLKMANALQ 59 (193)
Q Consensus 1 l~a-p~~~P~~~~l~~~R~~lG~RT~fN~lgpLlNP--------~~~~~~v~Gv------~------h~~~~~~~a~~~~ 59 (193)
||| |.|||+|+++.++|+++ ||+||+ ||+|| ...+++|+|| | ++.+.+.+.++++
T Consensus 179 l~a~~~~hPA~k~l~~lR~~l--rTvfNi--PLinpsi~skklA~g~~~~VlgVk~G~gafm~~lde~~~la~~~v~~~~ 254 (474)
T 1uou_A 179 VGQSEQLVPADGILYAARDVT--ATVDSL--PLITASILSKKLVEGLSALVVDVKFGGAAVFPNQEQARELAKTLVGVGA 254 (474)
T ss_dssp ECCCSSSSHHHHHHHHHHHHT--TCSSCH--HHHHHHHHHHHHHTTCSEEEEEEEEC--CCCCSHHHHHHHHHHHHHHHH
T ss_pred ecCchhhCHHHHHHHHHHhhh--CCccch--hhcCcHHHHHHHhhcCCeEEEEeccccccccCCHHHHHHHHHHHHHHHH
Confidence 478 69999999999999995 999999 99999 7889999999 8 8999999999999
Q ss_pred HcCCceEEEEeeCCccccCCCCCeEEEEEeCCeEEEEEECCCCCCCCCCCCCCcCCCChHHHHHHHHHHHCCCc-chHHH
Q 029452 60 RFGLKRALVVHSEGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGER-GAIAD 138 (193)
Q Consensus 60 ~lg~~~a~vv~GeG~dE~s~~~~t~v~~~~~g~i~~~~~~p~~~Gl~~~~~~~l~~~~~~~~a~~~~~vL~G~~-~~~~~ 138 (193)
.+|.++.+++++ +| .| +|. .++++.+|++.+ ++|+|+. .+++|
T Consensus 255 ~~G~~~~~vitd--~~-----------------------~p--lg~--------~~G~a~E~ae~~-~vL~G~g~~~~~d 298 (474)
T 1uou_A 255 SLGLRVAAALTA--MD-----------------------KP--LGR--------CVGHALEVEEAL-LCMDGAGPPDLRD 298 (474)
T ss_dssp HTTCCEEEEEEE--CS-----------------------SC--STT--------EESSHHHHHHHH-HHHTTCSCHHHHH
T ss_pred HCCCEEEEEEec--CC-----------------------Cc--ccc--------cCCCHHHHHHHH-HHHCCCCchhHHH
Confidence 999999999985 22 11 332 267899999765 9999985 67899
Q ss_pred HHHHHHHHHHHHhcccCCHHHHHHHHHHHHHccHHHHHHHHHHHHhcCCCC
Q 029452 139 ALILNAAAALLVSCKVNTLAEGVALAREIQLSGKALNTLDLWIEVSKGAPA 189 (193)
Q Consensus 139 ~v~lNaA~~L~~~g~~~~i~~g~~~A~e~i~sG~a~~~l~~~~~~~~~~~~ 189 (193)
.|++|||.+||++|+++|+++|+++|+++|+||+|+++|++|+++++..+.
T Consensus 299 ~vl~nAa~~L~~aG~a~~~~eg~~~A~e~i~sG~A~~kl~~li~~~~g~~~ 349 (474)
T 1uou_A 299 LVTTLGGALLWLSGHAGTQAQGAARVAAALDDGSALGRFERMLAAQGVDPG 349 (474)
T ss_dssp HHHHHHHHHHHHHTSCSSHHHHHHHHHHHHHSSHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcChHHHHHHHHHHHhCCCch
Confidence 999999999999999999999999999999999999999999998887543
No 11
>2tpt_A Thymidine phosphorylase; transferase, salvage pathway; 2.60A {Escherichia coli} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 1azy_A 1tpt_A 1otp_A
Probab=99.93 E-value=4e-27 Score=210.27 Aligned_cols=161 Identities=22% Similarity=0.203 Sum_probs=120.1
Q ss_pred CCC-CccCHHhhccHHHhhhCCCCCchHhhhhccCCCCCCceEEeecChhHHHHHHHHHHHcCCceEEEE---eeC----
Q 029452 1 MMS-TKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVV---HSE---- 72 (193)
Q Consensus 1 l~a-p~~~P~~~~l~~~R~~lG~RT~fN~lgpLlNP~~~~~~v~Gv~h~~~~~~~a~~~~~lg~~~a~vv---~Ge---- 72 (193)
+|| |.|||+|+++.++|+++ ||+||+ ||+|| +.+.+++++ |.+ ++|+ ||+
T Consensus 154 l~a~~~~hPA~k~l~~lR~~l--rTvfNi--PLin~------------s~lskk~A~-----G~~-alVvdVk~G~gaf~ 211 (440)
T 2tpt_A 154 IGQTSSLAPADKRFYATRDIT--ATVDSI--PLITA------------SILAKKLAE-----GLD-ALVMDVKVGSGAFM 211 (440)
T ss_dssp EECCTTBSHHHHHHHHHHHHT--TCCCCH--HHHHH------------HHHHHHHTT-----CCS-EEEEEEEESTTSSS
T ss_pred EcCchhhCHHHHHHHHHHHhh--CCccCh--hhcCC------------HHHHHHHhc-----CCC-eEEEEeccCCcccc
Confidence 478 79999999999999999 899999 99996 334444432 554 6666 652
Q ss_pred -CccccCCCCCeEEEEEeC-CeEEEEEECCCCCCCCCCCCCCcCCCChHHHHHHHHHHHCCCc--chHHHHHHHHHHHHH
Q 029452 73 -GLDEMSPLGPGLILDVTQ-EKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGER--GAIADALILNAAAAL 148 (193)
Q Consensus 73 -G~dE~s~~~~t~v~~~~~-g~i~~~~~~p~~~Gl~~~~~~~l~~~~~~~~a~~~~~vL~G~~--~~~~~~v~lNaA~~L 148 (193)
|+||++..++|.+++..+ |.-....++. +. .++... ++++.+|++. +++|+|+. .+++|.|++|||.+|
T Consensus 212 ~~~de~~~la~t~v~~~~~~G~~~~a~itd---~~--~plg~~-~G~a~E~ae~-~~vL~G~g~~~~~~d~vl~nAa~~L 284 (440)
T 2tpt_A 212 PTYELSEALAEAIVGVANGAGVRTTALLTD---MN--QVLASS-AGNAVEVREA-VQFLTGEYRNPRLFDVTMALCVEML 284 (440)
T ss_dssp SSHHHHHHHHHHHHHHHHHTTCEEEEEEEE---CS--SCSSSC-EESHHHHHHH-HHHHHTSCCCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCCceEEEecC---CC--Cchhhc-CCCHHHHHHH-HHHHCCCCCchHHHHHHHHHHHHHH
Confidence 566666655554443211 1111111211 01 334433 6799999988 99999984 347999999999999
Q ss_pred HHhcccCCHHHHHHHHHHHHHccHHHHHHHHHHHHhcCCCCc
Q 029452 149 LVSCKVNTLAEGVALAREIQLSGKALNTLDLWIEVSKGAPAF 190 (193)
Q Consensus 149 ~~~g~~~~i~~g~~~A~e~i~sG~a~~~l~~~~~~~~~~~~~ 190 (193)
|++|+++|+++|+++|+++|+||+|+++|++|+++++..+-+
T Consensus 285 ~~ag~a~~~~eg~~~A~~~i~sG~A~~kl~~~v~~~~g~~~~ 326 (440)
T 2tpt_A 285 ISGKLAKDDAEARAKLQAVLDNGKAAEVFGRMVAAQKGPTDF 326 (440)
T ss_dssp HHTTSCSSHHHHHHHHHHHHHTSHHHHHHHHHHHHTTCCTTH
T ss_pred HhcCCCCCHHHHHHHHHHHHhcChHHHHHHHHHHHhCCChhh
Confidence 999999999999999999999999999999999998876543
No 12
>1o51_A Hypothetical protein TM0021; ferredoxin-like fold, structural genomics, joint center for structural genomics, JCSG; HET: ADP; 2.50A {Thermotoga maritima} SCOP: d.58.5.4
Probab=58.24 E-value=12 Score=26.72 Aligned_cols=43 Identities=12% Similarity=0.190 Sum_probs=26.5
Q ss_pred ChhHHHHHHHHHHHcCCceEEEEee-CCccccCCCCCeEEEEEe
Q 029452 47 NENLVLKMANALQRFGLKRALVVHS-EGLDEMSPLGPGLILDVT 89 (193)
Q Consensus 47 h~~~~~~~a~~~~~lg~~~a~vv~G-eG~dE~s~~~~t~v~~~~ 89 (193)
++++.+.+.+.++..|..-+.|++| +|.-.=+......+..+.
T Consensus 28 g~pL~~~Iv~~~~~~GiaGaTV~rgi~GfG~~g~ih~~~~l~ls 71 (114)
T 1o51_A 28 GKPLFEYLVKRAYELGMKGVTVYRGIMGFGHKRHMHRSDFFSLS 71 (114)
T ss_dssp TEEHHHHHHHHHHHTTCSCCEEEECSCCCCC-------------
T ss_pred CeEHHHHHHHHHHHCCCCeEEEEcCcEEECCCCCEEccceeecC
Confidence 5778899999999999999999999 887544423344444433
No 13
>2l48_A N-acetylmuramoyl-L-alanine amidase; bacillus anthracis gamma- phage endolysin, PLYG, cell WALL B domain, homodimer, ACT-type domain; NMR {Bacillus phage gamma}
Probab=57.03 E-value=22 Score=24.14 Aligned_cols=38 Identities=16% Similarity=0.313 Sum_probs=33.1
Q ss_pred CCceEEeecChhHHHHHHHHHHHcCCceEEEEeeCCcc
Q 029452 38 VPFAVVGVYNENLVLKMANALQRFGLKRALVVHSEGLD 75 (193)
Q Consensus 38 ~~~~v~Gv~h~~~~~~~a~~~~~lg~~~a~vv~GeG~d 75 (193)
-.+...|-|.+..++-+.++|..+|++.-+++++||+.
T Consensus 19 ~n~V~TGgfg~~~v~ev~~am~~~g~~gkii~~~dGl~ 56 (85)
T 2l48_A 19 QNIIQSGAFSPYETPDVMGALTSLKMTADFILQSDGLT 56 (85)
T ss_dssp CCCEEECCBCTTTHHHHHHHHHHTTCCEEEEECTTSCE
T ss_pred ceEEEecccCHHHHHHHHHHHHHcCceEEEEECCCceE
Confidence 36789999999999999999999999877887777753
No 14
>2dcl_A Hypothetical UPF0166 protein PH1503; hexamer, structural genomics, NPPSFA, national project on PR structural and functional analyses; HET: AMP; 2.28A {Pyrococcus horikoshii}
Probab=45.00 E-value=26 Score=25.39 Aligned_cols=42 Identities=17% Similarity=0.269 Sum_probs=25.9
Q ss_pred ChhHHHHHHHHHHHcCCceEEEEee-CCccccCCCCCeEEEEE
Q 029452 47 NENLVLKMANALQRFGLKRALVVHS-EGLDEMSPLGPGLILDV 88 (193)
Q Consensus 47 h~~~~~~~a~~~~~lg~~~a~vv~G-eG~dE~s~~~~t~v~~~ 88 (193)
++++.+.+.+.++..|..-+.|++| +|...=+.-....+..+
T Consensus 24 g~pL~~~Iv~~a~~~GiaGaTV~rgi~GfG~~g~ih~~~~l~l 66 (127)
T 2dcl_A 24 GRPLYKVIVEKLREMGIAGATVYRGIYGFGKKSRVHSSDVIRL 66 (127)
T ss_dssp TEEHHHHHHHHHHHTTCSCEEEEECSEEEC-------------
T ss_pred CcCHHHHHHHHHHHCCCCeEEEEcCcEEECCCCCEecceeeec
Confidence 6788999999999999999999999 77644333233333333
No 15
>2gdt_A Leader protein; P65 homolog; NSP1 (EC 3.4.22.-); beta-barrel, alpha-beta, replicase, structural genomics, PSI-2, protein structure initiative; NMR {Sars coronavirus} SCOP: d.346.1.1 PDB: 2hsx_A
Probab=40.57 E-value=14 Score=26.28 Aligned_cols=22 Identities=23% Similarity=0.203 Sum_probs=19.0
Q ss_pred hcccCCHHHHHHHHHHHHHccH
Q 029452 151 SCKVNTLAEGVALAREIQLSGK 172 (193)
Q Consensus 151 ~g~~~~i~~g~~~A~e~i~sG~ 172 (193)
.|...+++||++.|++++..|+
T Consensus 18 ~gw~~~~EeALe~ar~~L~~g~ 39 (116)
T 2gdt_A 18 RGFGDSVEEALSEAREHLKNGT 39 (116)
T ss_dssp CCSCSSHHHHHHHHHHHHHHTC
T ss_pred cCCCCCHHHHHHHHHHHhhcCC
Confidence 3567899999999999999886
No 16
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=22.05 E-value=74 Score=20.33 Aligned_cols=48 Identities=0% Similarity=-0.078 Sum_probs=29.7
Q ss_pred CChHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHH
Q 029452 116 GGPAYNAEVLRRVLSGERGAIADALILNAAAALLVSCKVNTLAEGVALAREIQ 168 (193)
Q Consensus 116 ~~~~~~a~~~~~vL~G~~~~~~~~v~lNaA~~L~~~g~~~~i~~g~~~A~e~i 168 (193)
++.++..+.++++++=..+ ...+..+-|.++...|+ +++|++..++++
T Consensus 21 g~~~~A~~~~~~al~~~p~--~~~a~~~lg~~~~~~g~---~~~A~~~~~~al 68 (100)
T 3ma5_A 21 DNASRALALFEELVETDPD--YVGTYYHLGKLYERLDR---TDDAIDTYAQGI 68 (100)
T ss_dssp TCHHHHHHHHHHHHHHSTT--CTHHHHHHHHHHHHTTC---HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHcCC---HHHHHHHHHHHH
Confidence 5667777778877764432 11255677877777654 566666555555
No 17
>2yzt_A Putative uncharacterized protein TTHA1756; uncharacterized conserved protein, structural genomics, UNKN function, NPPSFA; 1.80A {Thermus thermophilus}
Probab=21.55 E-value=60 Score=20.33 Aligned_cols=16 Identities=13% Similarity=0.054 Sum_probs=10.9
Q ss_pred cCCHHHHHHHHHHHHH
Q 029452 154 VNTLAEGVALAREIQL 169 (193)
Q Consensus 154 ~~~i~~g~~~A~e~i~ 169 (193)
.+|++|+++.++++|.
T Consensus 30 G~T~eEa~~~~~eAi~ 45 (67)
T 2yzt_A 30 AQSFEELLRRLQEAIA 45 (67)
T ss_dssp ESSHHHHHHHHHHHHH
T ss_pred eCCHHHHHHHHHHHHH
Confidence 3567777777777764
No 18
>2lqc_B Voltage-dependent L-type calcium channel subunit; metal binding protein-transport protein complex; NMR {Homo sapiens}
Probab=26.41 E-value=21 Score=18.54 Aligned_cols=21 Identities=24% Similarity=0.329 Sum_probs=17.0
Q ss_pred cCCHHHHHHHHHHHHHccHHH
Q 029452 154 VNTLAEGVALAREIQLSGKAL 174 (193)
Q Consensus 154 ~~~i~~g~~~A~e~i~sG~a~ 174 (193)
+-||+.++..||+.=++|+|.
T Consensus 5 aLSWQAAIdAARqak~~~~a~ 25 (26)
T 2lqc_B 5 ALSWQAAIDAARQAKLMGSAX 25 (26)
Confidence 458888999999988888764
No 19
>3sb1_A Hydrogenase expression protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, HUPH, unkno function; HET: PGE; 1.67A {Thiobacillus denitrificans}
Probab=20.84 E-value=2.7e+02 Score=20.90 Aligned_cols=66 Identities=12% Similarity=0.142 Sum_probs=38.9
Q ss_pred HHHHcCCceE-EEEeeCCccccCCCCCeEEEEEe----CCeE--EEEEECCCCCCCCCCCCCCcCC--CChHHHHHHHHH
Q 029452 57 ALQRFGLKRA-LVVHSEGLDEMSPLGPGLILDVT----QEKI--ERFSFDPLDYGIPRCTLESLQG--GGPAYNAEVLRR 127 (193)
Q Consensus 57 ~~~~lg~~~a-~vv~GeG~dE~s~~~~t~v~~~~----~g~i--~~~~~~p~~~Gl~~~~~~~l~~--~~~~~~a~~~~~ 127 (193)
+.+.||.-.+ +.++|.|..++.-++-.-||.++ ++.+ ...+|.+ ++ +.+.. .|-+++++.+++
T Consensus 84 L~~~LGeGEVsi~~~g~g~~rIqET~~~GVWrV~~~ns~~~~ildtIEV~~----vP----~va~Aa~EDi~dS~~rL~e 155 (160)
T 3sb1_A 84 LRAELGGGEVSVTLHADGASTLDETAFPGVWWIIHRNAQGAVTTQFIEVAF----VP----ELVKSPRADVAAARAALVL 155 (160)
T ss_dssp HHHHHCCCSEEEEEC-CCEEEEEECSSTTEEEEEEECTTSCEEEEEEEESS----SC----GGGSCCHHHHHHHHHHHHH
T ss_pred HHHHhCCCceEEEEcCCCcEEEEEecCCCEEEEEEECCCCCEEeeEEEEeC----CC----HHHhcCcchHHHHHHHHHH
Confidence 3444554333 44667888888777777788876 4554 3344432 11 11111 266889999999
Q ss_pred HHC
Q 029452 128 VLS 130 (193)
Q Consensus 128 vL~ 130 (193)
+|+
T Consensus 156 ~l~ 158 (160)
T 3sb1_A 156 RMA 158 (160)
T ss_dssp HHT
T ss_pred Hhh
Confidence 885
No 20
>3ief_A TRNA (guanine-N(1)-)-methyltransferase; niaid, ssgcid, seattle structural genomics center for infectious diseases; 2.50A {Bartonella henselae}
Probab=20.45 E-value=75 Score=25.52 Aligned_cols=29 Identities=31% Similarity=0.268 Sum_probs=19.0
Q ss_pred hHHHHHHHHHHHcCCceEEEEee--CCccccCC
Q 029452 49 NLVLKMANALQRFGLKRALVVHS--EGLDEMSP 79 (193)
Q Consensus 49 ~~~~~~a~~~~~lg~~~a~vv~G--eG~dE~s~ 79 (193)
.|-..+++-+.. .++.+++|| ||.||--.
T Consensus 92 ~f~Q~~a~eLa~--~~~lillCGrYEGiDeRv~ 122 (233)
T 3ief_A 92 LLNQAYARSLAR--SSGVTLVCGRFEGVDERII 122 (233)
T ss_dssp ECCHHHHHHHTT--SSEEEEEECCSSCBBHHHH
T ss_pred ccCHHHHHHHHC--CCCEEEEecccccHHHHHH
Confidence 344444443333 468999999 99999743
Done!