BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029453
(193 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1F6B|A Chain A, Crystal Structure Of Sar1-Gdp Complex
pdb|1F6B|B Chain B, Crystal Structure Of Sar1-Gdp Complex
Length = 198
Score = 224 bits (572), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 108/195 (55%), Positives = 135/195 (69%), Gaps = 4/195 (2%)
Query: 2 FLVDWFYG----ILVSLGLWQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSE 57
F+ DW Y +L LGL++K K++FLGLDN+GKTTLLHMLKD+RL QH PT +PTSE
Sbjct: 3 FIFDWIYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSE 62
Query: 58 ELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRXXXXXXXXX 117
EL+I + F FDLGGH ARRVWK+Y ++ +V+L+D D ER ESK
Sbjct: 63 ELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDE 122
Query: 118 XXXXVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVR 177
VP LILGNKID P A SE+ LR GL TTGKG+V+L N RPLEVFMCS+++
Sbjct: 123 TIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLK 182
Query: 178 KMGYGEGFKWLSQYI 192
+ GYGEGF+W++QYI
Sbjct: 183 RQGYGEGFRWMAQYI 197
>pdb|2FMX|A Chain A, An Open Conformation Of Switch I Revealed By Sar1-gdp
Crystal Structure At Low Mg(2+)
pdb|2FMX|B Chain B, An Open Conformation Of Switch I Revealed By Sar1-gdp
Crystal Structure At Low Mg(2+)
Length = 195
Score = 222 bits (565), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 105/186 (56%), Positives = 131/186 (70%)
Query: 7 FYGILVSLGLWQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKF 66
F +L LGL++K K++FLGLDN+GKTTLLHMLKD+RL QH PT +PTSEEL+I + F
Sbjct: 9 FSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTF 68
Query: 67 KAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRXXXXXXXXXXXXXVPFLI 126
FDLGGH ARRVWK+Y ++ +V+L+D D ER ESK VP LI
Sbjct: 69 TTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILI 128
Query: 127 LGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFK 186
LGNKID P A SE+ LR GL TTGKG+V+L N RPLEVFMCS++++ GYGEGF+
Sbjct: 129 LGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFR 188
Query: 187 WLSQYI 192
W++QYI
Sbjct: 189 WMAQYI 194
>pdb|2GAO|A Chain A, Crystal Structure Of Human Sar1a In Complex With Gdp
pdb|2GAO|B Chain B, Crystal Structure Of Human Sar1a In Complex With Gdp
Length = 208
Score = 220 bits (561), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 105/188 (55%), Positives = 131/188 (69%)
Query: 5 DWFYGILVSLGLWQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKI 64
+ F +L LGL++K K++FLGLDN+GKTTLLHMLKD+RL QH PT +PTSEEL+I +
Sbjct: 20 NGFSSVLQFLGLYKKSGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGM 79
Query: 65 KFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRXXXXXXXXXXXXXVPF 124
F FDLGGH+ ARRVWK+Y ++ +V+L+D D R ESK VP
Sbjct: 80 TFTTFDLGGHEQARRVWKNYLPAINGIVFLVDCADHSRLVESKVELNALMTDETISNVPI 139
Query: 125 LILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEG 184
LILGNKID A SE++LR GL TTGKGNV L N RP+EVFMCS++++ GYGEG
Sbjct: 140 LILGNKIDRTDAISEEKLREIFGLYGQTTGKGNVTLKELNARPMEVFMCSVLKRQGYGEG 199
Query: 185 FKWLSQYI 192
F+WLSQYI
Sbjct: 200 FRWLSQYI 207
>pdb|1M2O|B Chain B, Crystal Structure Of The Sec23-Sar1 Complex
pdb|1M2O|D Chain D, Crystal Structure Of The Sec23-Sar1 Complex
Length = 190
Score = 219 bits (558), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 108/187 (57%), Positives = 131/187 (70%), Gaps = 5/187 (2%)
Query: 6 WFYGILVSLGLWQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIK 65
WF +L SLGLW K K+LFLGLDN+GKTTLLHMLK++RL QPT +PTSEEL+IG IK
Sbjct: 9 WFRDVLASLGLWNKHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIK 68
Query: 66 FKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRXXXXXXXXXXXXXVPFL 125
F FDLGGH ARR+WKDY+ +V+ +V+L+DA D ERF E++ VPF+
Sbjct: 69 FTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFV 128
Query: 126 ILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGF 185
ILGNKID P A SE ELR +GL N TTG + RP+EVFMCS+V + GY E F
Sbjct: 129 ILGNKIDAPNAVSEAELRSALGLLN-TTGSQRIE----GQRPVEVFMCSVVMRNGYLEAF 183
Query: 186 KWLSQYI 192
+WLSQYI
Sbjct: 184 QWLSQYI 190
>pdb|2FA9|A Chain A, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight
Into The Coat-controlled Gtp Hydrolysis In The
Disassembly Of Cop Ii
pdb|2FA9|B Chain B, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight
Into The Coat-controlled Gtp Hydrolysis In The
Disassembly Of Cop Ii
Length = 189
Score = 218 bits (555), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 104/186 (55%), Positives = 130/186 (69%)
Query: 7 FYGILVSLGLWQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKF 66
F +L LGL++K K++FLGLDN+GKTTLLHMLKD+RL QH PT +PTSEEL+I + F
Sbjct: 3 FSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTF 62
Query: 67 KAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRXXXXXXXXXXXXXVPFLI 126
FDLGG ARRVWK+Y ++ +V+L+D D ER ESK VP LI
Sbjct: 63 TTFDLGGGIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILI 122
Query: 127 LGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFK 186
LGNKID P A SE+ LR GL TTGKG+V+L N RPLEVFMCS++++ GYGEGF+
Sbjct: 123 LGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFR 182
Query: 187 WLSQYI 192
W++QYI
Sbjct: 183 WMAQYI 188
>pdb|2QTV|B Chain B, Structure Of Sec23-Sar1 Complexed With The Active Fragment
Of Sec31
Length = 167
Score = 198 bits (504), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 98/171 (57%), Positives = 120/171 (70%), Gaps = 5/171 (2%)
Query: 21 AKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMARRV 80
K+LFLGLDN+GKTTLLHMLK++RL QPT +PTSEEL+IG IKF FDLGGH ARR+
Sbjct: 2 GKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRL 61
Query: 81 WKDYYAKVDAVVYLIDAYDKERFSESKRXXXXXXXXXXXXXVPFLILGNKIDIPYAASED 140
WKDY+ +V+ +V+L+DA D ERF E++ VPF+ILGNKID P A SE
Sbjct: 62 WKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEA 121
Query: 141 ELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQY 191
ELR +GL N TTG + RP+EVFMCS+V + GY E F+WLSQY
Sbjct: 122 ELRSALGLLN-TTGSQRIE----GQRPVEVFMCSVVMRNGYLEAFQWLSQY 167
>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
pdb|1MOZ|B Chain B, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
Length = 183
Score = 93.2 bits (230), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 81/180 (45%), Gaps = 14/180 (7%)
Query: 16 LW--QKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGG 73
LW KE +IL LGLD +GKTT+L+ L+ +V +PT E LS +K +DLGG
Sbjct: 12 LWGSNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKNLKLNVWDLGG 71
Query: 74 HQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRXXXXXXXXXXXXXVPFLILGNKIDI 133
R W+ YYA AV++++D+ DK+R S + + L+ NK D
Sbjct: 72 QTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQ 131
Query: 134 PYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYIK 193
P A S E+ + L R + S ++ G EG WL IK
Sbjct: 132 PGALSASEVSKELNLVELKD------------RSWSIVASSAIKGEGITEGLDWLIDVIK 179
>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gdp-Alf4
Length = 164
Score = 92.4 bits (228), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 80/173 (46%), Gaps = 12/173 (6%)
Query: 20 EAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMARR 79
E +IL LGLDN+GKTTLL L E + PTQ + + K +D+GG + R
Sbjct: 4 EVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRP 63
Query: 80 VWKDYYAKVDAVVYLIDAYDKERFSESKRXXXXXXXXXXXXXVPFLILGNKIDIPYAASE 139
W+ Y+ D ++Y+ID+ D++RF E+ + VP LI NK D+ AA
Sbjct: 64 YWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPA 123
Query: 140 DELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192
E+ + NL R ++ CS + G +G W+ + +
Sbjct: 124 SEIAEGL------------NLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 164
>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp
Length = 181
Score = 92.4 bits (228), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 81/174 (46%), Gaps = 12/174 (6%)
Query: 19 KEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMAR 78
+E +IL LGLDN+GKTTLL L E + PTQ + + K +D+GG + R
Sbjct: 15 QEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIR 74
Query: 79 RVWKDYYAKVDAVVYLIDAYDKERFSESKRXXXXXXXXXXXXXVPFLILGNKIDIPYAAS 138
W+ Y+ D ++Y+ID+ D++RF E+ + VP LI NK D+ AA
Sbjct: 75 PYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAP 134
Query: 139 EDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192
E+ + NL R ++ CS + G +G W+ + +
Sbjct: 135 ASEIAEGL------------NLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 176
>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
pdb|4GOJ|B Chain B, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
Length = 189
Score = 92.4 bits (228), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 81/174 (46%), Gaps = 12/174 (6%)
Query: 19 KEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMAR 78
+E +IL LGLDN+GKTTLL L E + PTQ + + K +D+GG + R
Sbjct: 16 QEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIR 75
Query: 79 RVWKDYYAKVDAVVYLIDAYDKERFSESKRXXXXXXXXXXXXXVPFLILGNKIDIPYAAS 138
W+ Y+ D ++Y+ID+ D++RF E+ + VP LI NK D+ AA
Sbjct: 76 PYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAP 135
Query: 139 EDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192
E+ + NL R ++ CS + G +G W+ + +
Sbjct: 136 ASEIAEGL------------NLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 177
>pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gppnhp
Length = 164
Score = 91.3 bits (225), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 80/174 (45%), Gaps = 12/174 (6%)
Query: 19 KEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMAR 78
E +IL LGLDN+GKTTLL L E + PTQ + + K +D+GG + R
Sbjct: 3 SEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGLRKIR 62
Query: 79 RVWKDYYAKVDAVVYLIDAYDKERFSESKRXXXXXXXXXXXXXVPFLILGNKIDIPYAAS 138
W+ Y+ D ++Y+ID+ D++RF E+ + VP LI NK D+ AA
Sbjct: 63 PYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAP 122
Query: 139 EDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192
E+ + NL R ++ CS + G +G W+ + +
Sbjct: 123 ASEIAEGL------------NLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 164
>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound
Conformation
Length = 181
Score = 90.1 bits (222), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 80/176 (45%), Gaps = 12/176 (6%)
Query: 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMA 77
KE +IL +GLD +GKTT+L+ LK ++ PT E + I F +D+GG
Sbjct: 15 NKEMRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVECVQYCNISFTVWDVGGQDRI 74
Query: 78 RRVWKDYYAKVDAVVYLIDAYDKERFSESKRXXXXXXXXXXXXXVPFLILGNKIDIPYAA 137
R +W+ YY + V++++D+ D+ R E++ +L+ NK D+P A
Sbjct: 75 RSLWRHYYCNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELCNAAWLVFANKQDLPEAM 134
Query: 138 SEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYIK 193
S E+ +GL + RP + G EG +WLS +K
Sbjct: 135 SAAEITEKLGLHSIRN------------RPWFIQATCATSGEGLYEGLEWLSNCLK 178
>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|B Chain B, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|C Chain C, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|D Chain D, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
Length = 165
Score = 90.1 bits (222), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 83/175 (47%), Gaps = 12/175 (6%)
Query: 19 KEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMAR 78
+E +IL LGLD +GKTT+L+ L+ +V PT E ++ +KF+ +DLGG R
Sbjct: 1 REMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIR 60
Query: 79 RVWKDYYAKVDAVVYLIDAYDKERFSESKRXXXXXXXXXXXXXVPFLILGNKIDIPYAAS 138
W+ YY+ DAV+Y++D+ D++R SK ++ NK D+ A +
Sbjct: 61 PYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMT 120
Query: 139 EDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYIK 193
E+ +GL R ++F S + G E +WL + +K
Sbjct: 121 PSEMANALGLPALKD------------RKWQIFKTSATKGTGLDEAMEWLVETLK 163
>pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
pdb|4DCN|B Chain B, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
Length = 166
Score = 89.7 bits (221), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 83/175 (47%), Gaps = 12/175 (6%)
Query: 19 KEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMAR 78
+E +IL LGLD +GKTT+L+ L+ +V PT E ++ +KF+ +DLGG R
Sbjct: 3 REMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIR 62
Query: 79 RVWKDYYAKVDAVVYLIDAYDKERFSESKRXXXXXXXXXXXXXVPFLILGNKIDIPYAAS 138
W+ YY+ DAV+Y++D+ D++R SK ++ NK D+ A +
Sbjct: 63 PYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMT 122
Query: 139 EDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYIK 193
E+ +GL R ++F S + G E +WL + +K
Sbjct: 123 SSEMANSLGLPALKD------------RKWQIFKTSATKGTGLDEAMEWLVETLK 165
>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein,
Gdp- Bound
Length = 181
Score = 89.0 bits (219), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 80/176 (45%), Gaps = 12/176 (6%)
Query: 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMA 77
KE +IL +GLD +GKTT+L+ LK ++ PT E + I F +D+GG
Sbjct: 15 NKEMRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVETVQYKNISFTVWDVGGQDRI 74
Query: 78 RRVWKDYYAKVDAVVYLIDAYDKERFSESKRXXXXXXXXXXXXXVPFLILGNKIDIPYAA 137
R +W+ YY + V++++D+ D+ R E++ +L+ NK D+P A
Sbjct: 75 RSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVFANKQDLPEAM 134
Query: 138 SEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYIK 193
S E+ +GL + RP + G EG +WLS +K
Sbjct: 135 SAAEITEKLGLHSIRN------------RPWFIQATCATSGEGLYEGLEWLSNSLK 178
>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2
(Scarf2) Complexed With Gdp-3'p At 1.6a Resolution
Length = 181
Score = 88.6 bits (218), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 83/178 (46%), Gaps = 16/178 (8%)
Query: 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMA 77
KE +IL +GLD +GKTT+L+ LK ++ PT E + I F +D+GG
Sbjct: 15 NKEMRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVETVQYKNISFTVWDVGGQDRI 74
Query: 78 RRVWKDYYAKVDAVVYLIDAYDKERFSESKRXXXXXXXXXXXXXVPFLILGNKIDIPYAA 137
R +W+ YY + V+++ID+ D+ R E++ +L+ NK D+P A
Sbjct: 75 RSLWRHYYRNTEGVIFVIDSNDRSRIGEAREVMQRMLNEDELRNAVWLVFANKQDLPEAM 134
Query: 138 SEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYG--EGFKWLSQYIK 193
S E+ +GL ++R F+ S G G EG +WLS +K
Sbjct: 135 SAAEITEKLGL--------------HSIRNRPWFIQSTCATSGEGLYEGLEWLSNNLK 178
>pdb|1UPT|A Chain A, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|C Chain C, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|E Chain E, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|G Chain G, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
Length = 171
Score = 86.7 bits (213), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 82/175 (46%), Gaps = 12/175 (6%)
Query: 19 KEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMAR 78
+E +IL LGLD +GKTT+L+ L+ +V PT E ++ +KF+ +DLGG R
Sbjct: 6 REXRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIR 65
Query: 79 RVWKDYYAKVDAVVYLIDAYDKERFSESKRXXXXXXXXXXXXXVPFLILGNKIDIPYAAS 138
W+ YY+ DAV+Y++D+ D++R SK ++ NK D A +
Sbjct: 66 PYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAXLEEEELRKAILVVFANKQDXEQAXT 125
Query: 139 EDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYIK 193
E +GL R ++F S + G E +WL + +K
Sbjct: 126 SSEXANSLGLPALKD------------RKWQIFKTSATKGTGLDEAXEWLVETLK 168
>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
pdb|3TJZ|D Chain D, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
Length = 164
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 78/172 (45%), Gaps = 12/172 (6%)
Query: 22 KILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMARRVW 81
+IL +GLD +GKTT+L+ LK ++ PT E + I F +D+GG R +W
Sbjct: 2 RILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVETVQYKNISFTVWDVGGQDRIRSLW 61
Query: 82 KDYYAKVDAVVYLIDAYDKERFSESKRXXXXXXXXXXXXXVPFLILGNKIDIPYAASEDE 141
+ YY + V++++D+ D+ R E++ +L+ NK D+P A S E
Sbjct: 62 RHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVFANKQDLPEAMSAAE 121
Query: 142 LRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYIK 193
+ +GL + RP + G EG +WLS +K
Sbjct: 122 ITEKLGLHSIRN------------RPWFIQATCATSGEGLYEGLEWLSNSLK 161
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 85.1 bits (209), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 71/135 (52%)
Query: 15 GLWQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGH 74
GL KE +IL LGLD +GKTT+L+ LK + V PT E ++ +KF +D+GG
Sbjct: 317 GLSNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQ 376
Query: 75 QMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRXXXXXXXXXXXXXVPFLILGNKIDIP 134
R +W+ YY +++++D D++R E+++ LI NK D+P
Sbjct: 377 DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLP 436
Query: 135 YAASEDELRYHMGLT 149
A E++ +GLT
Sbjct: 437 DAMKPHEIQEKLGLT 451
>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum
Adp-Ribosylation Factor 1
Length = 181
Score = 84.7 bits (208), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 83/178 (46%), Gaps = 16/178 (8%)
Query: 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMA 77
+K+ +IL +GLD +GKTT+L+ +K +V PT E + I F +D+GG
Sbjct: 15 KKDVRILMVGLDAAGKTTILYKVKLGEVVTTIPTIGFNVETVEFRNISFTVWDVGGQDKI 74
Query: 78 RRVWKDYYAKVDAVVYLIDAYDKERFSESKRXXXXXXXXXXXXXVPFLILGNKIDIPYAA 137
R +W+ YY+ D +++++D+ D+ER +++ L+ NK D+P A
Sbjct: 75 RPLWRHYYSNTDGLIFVVDSNDRERIDDAREELHRMINEEELKDAIILVFANKQDLPNAM 134
Query: 138 SEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYG--EGFKWLSQYIK 193
S E+ + L +R F+ S G G EGF WL+ ++
Sbjct: 135 SAAEVTEKLHL--------------NTIRERNWFIQSTCATRGDGLYEGFDWLTTHLN 178
>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
(Arl10b)
Length = 193
Score = 84.0 bits (206), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 76/147 (51%), Gaps = 6/147 (4%)
Query: 4 VDWFYGILVSLGLWQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQ-PTQYPTSEELSIG 62
+DWF + W++E ++ +GL SGKTT ++++ + + PT +++ G
Sbjct: 20 LDWFKALF-----WKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKG 74
Query: 63 KIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRXXXXXXXXXXXXXV 122
+ K +D+GG R +W+ Y V A+VY++DA D+E+ SK +
Sbjct: 75 NVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGI 134
Query: 123 PFLILGNKIDIPYAASEDELRYHMGLT 149
P L+LGNK D+P A E EL M L+
Sbjct: 135 PVLVLGNKRDLPGALDEKELIEKMNLS 161
>pdb|2X77|A Chain A, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1.
pdb|2X77|B Chain B, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1
Length = 189
Score = 83.6 bits (205), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 88/190 (46%), Gaps = 14/190 (7%)
Query: 6 WFYGILVSLGLWQKEAKI--LFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGK 63
W + +LGL + KI L LGLDN+GKT++L+ L +V PT E L
Sbjct: 6 WLASLKQTLGLLPADRKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVNLETLQYKN 65
Query: 64 IKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRXXXXXXXXXXXXXVP 123
I F+ +DLGG R W+ Y++ DAV+Y++D+ D++R +K
Sbjct: 66 ISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSL 125
Query: 124 FLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGE 183
LI NK D+P AASE E+ +G+++ R + S G E
Sbjct: 126 LLIFANKQDLPDAASEAEIAEQLGVSSIMN------------RTWTIVKSSSKTGDGLVE 173
Query: 184 GFKWLSQYIK 193
G WL + ++
Sbjct: 174 GMDWLVERLR 183
>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By
Human Arf6-Gtp
pdb|2A5F|A Chain A, Cholera Toxin A1 Subunit Bound To Its Substrate, Nad+, And
Its Human Protein Activator, Arf6
pdb|2J5X|A Chain A, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
pdb|2J5X|B Chain B, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
Length = 175
Score = 83.6 bits (205), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 69/134 (51%)
Query: 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMA 77
KE +IL LGLD +GKTT+L+ LK + V PT E ++ +KF +D+GG
Sbjct: 11 NKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKI 70
Query: 78 RRVWKDYYAKVDAVVYLIDAYDKERFSESKRXXXXXXXXXXXXXVPFLILGNKIDIPYAA 137
R +W+ YY +++++D D++R E+++ LI NK D+P A
Sbjct: 71 RPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM 130
Query: 138 SEDELRYHMGLTNF 151
E++ +GLT
Sbjct: 131 KPHEIQEKLGLTRI 144
>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp
Length = 174
Score = 83.6 bits (205), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 69/134 (51%)
Query: 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMA 77
KE +IL LGLD +GKTT+L+ LK + V PT E ++ +KF +D+GG
Sbjct: 10 NKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKI 69
Query: 78 RRVWKDYYAKVDAVVYLIDAYDKERFSESKRXXXXXXXXXXXXXVPFLILGNKIDIPYAA 137
R +W+ YY +++++D D++R E+++ LI NK D+P A
Sbjct: 70 RPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM 129
Query: 138 SEDELRYHMGLTNF 151
E++ +GLT
Sbjct: 130 KPHEIQEKLGLTRI 143
>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
pdb|3RD1|B Chain B, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
Length = 178
Score = 83.2 bits (204), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 73/149 (48%), Gaps = 6/149 (4%)
Query: 13 SLGLW------QKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKF 66
S+G W +KE +IL +GLD +GKT++L+ LK +V PT E + I F
Sbjct: 4 SMGSWLSKLLGKKEMRILMVGLDAAGKTSILYKLKLGEIVTTIPTIGFNVETVEYKNISF 63
Query: 67 KAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRXXXXXXXXXXXXXVPFLI 126
+D+GG R +W+ YY A+++++D+ D++R E++ L+
Sbjct: 64 TVWDVGGQDKIRPLWRHYYQNTQAIIFVVDSNDRDRIGEAREELMKMLNEDEMRNAILLV 123
Query: 127 LGNKIDIPYAASEDELRYHMGLTNFTTGK 155
NK D+P A S E+ +GL K
Sbjct: 124 FANKHDLPQAMSISEVTEKLGLQTIKNRK 152
>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5
pdb|1Z6Y|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5
Length = 179
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 78/176 (44%), Gaps = 12/176 (6%)
Query: 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMA 77
+E K++ +GLDN+GKTT+L+ +V PT EE+ I +F +D+GG +
Sbjct: 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESL 73
Query: 78 RRVWKDYYAKVDAVVYLIDAYDKERFSESKRXXXXXXXXXXXXXVPFLILGNKIDIPYAA 137
R W YY + V+ ++D+ D+ER S ++ LI NK D+
Sbjct: 74 RSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECM 133
Query: 138 SEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYIK 193
+ E+ + LT+ + ++ C + G +G +W+ +K
Sbjct: 134 TVAEISQFLKLTSIKDHQWHIQ------------ACCALTGEGLCQGLEWMMSRLK 177
>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5
Length = 187
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 78/176 (44%), Gaps = 12/176 (6%)
Query: 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMA 77
+E K++ +GLDN+GKTT+L+ +V PT EE+ I +F +D+GG +
Sbjct: 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESL 73
Query: 78 RRVWKDYYAKVDAVVYLIDAYDKERFSESKRXXXXXXXXXXXXXVPFLILGNKIDIPYAA 137
R W YY + V+ ++D+ D+ER S ++ LI NK D+
Sbjct: 74 RSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECM 133
Query: 138 SEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYIK 193
+ E+ + LT+ + ++ C + G +G +W+ +K
Sbjct: 134 TVAEISQFLKLTSIKDHQWHIQ------------ACCALTGEGLCQGLEWMMSRLK 177
>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|C Chain C, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|D Chain D, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
Length = 183
Score = 82.4 bits (202), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 78/176 (44%), Gaps = 12/176 (6%)
Query: 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMA 77
+E K++ +GLDN+GKTT+L+ +V PT EE+ I +F +D+GG +
Sbjct: 20 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESL 79
Query: 78 RRVWKDYYAKVDAVVYLIDAYDKERFSESKRXXXXXXXXXXXXXVPFLILGNKIDIPYAA 137
R W YY + V+ ++D+ D+ER S ++ LI NK D+
Sbjct: 80 RSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECM 139
Query: 138 SEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYIK 193
+ E+ + LT+ + ++ C + G +G +W+ +K
Sbjct: 140 TVAEISQFLKLTSIKDHQWHIQ------------ACCALTGEGLCQGLEWMMSRLK 183
>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l)
Length = 175
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 69/134 (51%)
Query: 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMA 77
KE +IL LGLD +GKTT+L+ LK + V PT E ++ +KF +D+GG
Sbjct: 11 NKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGLDKI 70
Query: 78 RRVWKDYYAKVDAVVYLIDAYDKERFSESKRXXXXXXXXXXXXXVPFLILGNKIDIPYAA 137
R +W+ YY +++++D D++R E+++ LI NK D+P A
Sbjct: 71 RPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM 130
Query: 138 SEDELRYHMGLTNF 151
E++ +GLT
Sbjct: 131 KPHEIQEKLGLTRI 144
>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
(Casp Target)
Length = 181
Score = 81.3 bits (199), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 76/170 (44%), Gaps = 12/170 (7%)
Query: 19 KEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMAR 78
+E K++ +GLDN+GKTT+L+ +V PT EE+ I +F +D+GG + R
Sbjct: 20 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLR 79
Query: 79 RVWKDYYAKVDAVVYLIDAYDKERFSESKRXXXXXXXXXXXXXVPFLILGNKIDIPYAAS 138
W YY + V+ ++D+ D+ER S ++ LI NK D+ +
Sbjct: 80 SSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMT 139
Query: 139 EDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWL 188
E+ + LT+ + ++ C + G +G +W+
Sbjct: 140 VAEISQFLKLTSIKDHQWHIQ------------ACCALTGEGLCQGLEWM 177
>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8
Length = 179
Score = 81.3 bits (199), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 78/175 (44%), Gaps = 12/175 (6%)
Query: 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMA 77
+E K++ +GLDN+GKTT+L+ +V PT EE+ + F +D+GG +
Sbjct: 14 NQEHKVIIVGLDNAGKTTILYQFLMNEVVHTSPTIGSNVEEIVVKNTHFLMWDIGGQESL 73
Query: 78 RRVWKDYYAKVDAVVYLIDAYDKERFSESKRXXXXXXXXXXXXXVPFLILGNKIDIPYAA 137
R W YY+ + ++ ++D+ D+ER + +K LI NK D+
Sbjct: 74 RSSWNTYYSNTEFIILVVDSIDRERLAITKEELYRMLAHEDLRKAAVLIFANKQDMKGCM 133
Query: 138 SEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192
+ E+ ++ L++ P + C + G +G +W++ I
Sbjct: 134 TAAEISKYLTLSSIKD------------HPWHIQSCCALTGEGLCQGLEWMTSRI 176
>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|B Chain B, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|E Chain E, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
Length = 165
Score = 80.5 bits (197), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 68/132 (51%)
Query: 20 EAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMARR 79
E +IL LGLD +GKTT+L+ LK + V PT E ++ +KF +D+GG R
Sbjct: 3 EMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGLDKIRP 62
Query: 80 VWKDYYAKVDAVVYLIDAYDKERFSESKRXXXXXXXXXXXXXVPFLILGNKIDIPYAASE 139
+W+ YY +++++D D++R E+++ LI NK D+P A
Sbjct: 63 LWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKP 122
Query: 140 DELRYHMGLTNF 151
E++ +GLT
Sbjct: 123 HEIQEKLGLTRI 134
>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|C Chain C, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|E Chain E, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|G Chain G, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
Length = 172
Score = 80.1 bits (196), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 68/132 (51%)
Query: 20 EAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMARR 79
E +IL LGLD +GKTT+L+ LK + V PT E ++ +KF +D+GG R
Sbjct: 2 EMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGLDKIRP 61
Query: 80 VWKDYYAKVDAVVYLIDAYDKERFSESKRXXXXXXXXXXXXXVPFLILGNKIDIPYAASE 139
+W+ YY +++++D D++R E+++ LI NK D+P A
Sbjct: 62 LWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKP 121
Query: 140 DELRYHMGLTNF 151
E++ +GLT
Sbjct: 122 HEIQEKLGLTRI 133
>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex
pdb|4FME|F Chain F, Espg-Rab1-Arf6 Complex
Length = 160
Score = 80.1 bits (196), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 67/130 (51%)
Query: 22 KILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMARRVW 81
+IL LGLD +GKTT+L+ LK + V PT E ++ +KF +D+GG R +W
Sbjct: 2 RILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLW 61
Query: 82 KDYYAKVDAVVYLIDAYDKERFSESKRXXXXXXXXXXXXXVPFLILGNKIDIPYAASEDE 141
+ YY +++++D D++R E+++ LI NK D+P A E
Sbjct: 62 RHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHE 121
Query: 142 LRYHMGLTNF 151
++ +GLT
Sbjct: 122 IQEKLGLTRI 131
>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1RRG|B Chain B, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1R8Q|A Chain A, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1R8Q|B Chain B, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1RRF|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Monomeric Crystal Form
Length = 181
Score = 80.1 bits (196), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 83/178 (46%), Gaps = 16/178 (8%)
Query: 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMA 77
+KE +IL +GLD +GKTT+L+ LK +V PT E + I F +D+GG
Sbjct: 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKI 74
Query: 78 RRVWKDYYAKVDAVVYLIDAYDKERFSESKRXXXXXXXXXXXXXVPFLILGNKIDIPYAA 137
R +W+ Y+ +++++D+ D+ER +E++ L+ NK D+P A
Sbjct: 75 RPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM 134
Query: 138 SEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYG--EGFKWLSQYIK 193
+ E+ +GL ++R ++ + G G EG WLS ++
Sbjct: 135 NAAEITDKLGL--------------HSLRHRNWYIQATCATSGDGLYEGLDWLSNQLR 178
>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp
pdb|3N5C|B Chain B, Crystal Structure Of Arf6delta13 Complexed With Gdp
Length = 162
Score = 80.1 bits (196), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 67/130 (51%)
Query: 22 KILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMARRVW 81
+IL LGLD +GKTT+L+ LK + V PT E ++ +KF +D+GG R +W
Sbjct: 2 RILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLW 61
Query: 82 KDYYAKVDAVVYLIDAYDKERFSESKRXXXXXXXXXXXXXVPFLILGNKIDIPYAASEDE 141
+ YY +++++D D++R E+++ LI NK D+P A E
Sbjct: 62 RHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHE 121
Query: 142 LRYHMGLTNF 151
++ +GLT
Sbjct: 122 IQEKLGLTRI 131
>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
pdb|1HUR|B Chain B, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
Length = 180
Score = 80.1 bits (196), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 83/178 (46%), Gaps = 16/178 (8%)
Query: 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMA 77
+KE +IL +GLD +GKTT+L+ LK +V PT E + I F +D+GG
Sbjct: 14 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKI 73
Query: 78 RRVWKDYYAKVDAVVYLIDAYDKERFSESKRXXXXXXXXXXXXXVPFLILGNKIDIPYAA 137
R +W+ Y+ +++++D+ D+ER +E++ L+ NK D+P A
Sbjct: 74 RPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM 133
Query: 138 SEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYG--EGFKWLSQYIK 193
+ E+ +GL ++R ++ + G G EG WLS ++
Sbjct: 134 NAAEITDKLGL--------------HSLRHRNWYIQATCATSGDGLYEGLDWLSNQLR 177
>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
pdb|3AQ4|B Chain B, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
Length = 184
Score = 79.7 bits (195), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 85/187 (45%), Gaps = 16/187 (8%)
Query: 8 YGILVSLGLWQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFK 67
+G L S +KE +IL +GLD +GKTT+L+ LK +V PT E + I F
Sbjct: 8 FGKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFT 67
Query: 68 AFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRXXXXXXXXXXXXXVPFLIL 127
+D+GG R +W+ Y+ +++++D+ D++R E++ L+
Sbjct: 68 VWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVF 127
Query: 128 GNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYG--EGF 185
NK D+P A + E+ +GL ++R ++ S G G EG
Sbjct: 128 ANKQDLPNAMNAAEITDKLGL--------------HSLRQRHWYIQSTCATSGEGLYEGL 173
Query: 186 KWLSQYI 192
WLS I
Sbjct: 174 DWLSNNI 180
>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex
Length = 162
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 68/130 (52%)
Query: 22 KILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMARRVW 81
+IL LGLD +GKTT+L+ LK + V PT E ++ +KF +D+GG R +W
Sbjct: 2 RILXLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLW 61
Query: 82 KDYYAKVDAVVYLIDAYDKERFSESKRXXXXXXXXXXXXXVPFLILGNKIDIPYAASEDE 141
+ YY +++++D D++R E+++ LI NK D+P A E
Sbjct: 62 RHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREXRDAIILIFANKQDLPDAXKPHE 121
Query: 142 LRYHMGLTNF 151
++ +GLT
Sbjct: 122 IQEKLGLTRI 131
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
Length = 329
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 68/131 (51%)
Query: 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMA 77
+KE +IL +GLD +GKTT+L+ LK +V PT E + I F +D+GG
Sbjct: 163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKI 222
Query: 78 RRVWKDYYAKVDAVVYLIDAYDKERFSESKRXXXXXXXXXXXXXVPFLILGNKIDIPYAA 137
R +W+ Y+ +++++D+ D+ER +E++ L+ NK D+P A
Sbjct: 223 RPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM 282
Query: 138 SEDELRYHMGL 148
+ E+ +GL
Sbjct: 283 NAAEITDKLGL 293
>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5
Length = 192
Score = 77.8 bits (190), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 79/182 (43%), Gaps = 12/182 (6%)
Query: 9 GILVSLGLWQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKA 68
G L S +K+ +IL +GLD +GKTT+L+ LK +V PT E + I F
Sbjct: 18 GSLFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTV 77
Query: 69 FDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRXXXXXXXXXXXXXVPFLILG 128
+D+GG R +W+ Y+ +++++D+ D+ER ES L+
Sbjct: 78 WDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFA 137
Query: 129 NKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWL 188
NK D+P A EL +GL + + R V + G +G WL
Sbjct: 138 NKQDMPNAMPVSELTDKLGLQHLRS------------RTWYVQATCATQGTGLYDGLDWL 185
Query: 189 SQ 190
S
Sbjct: 186 SH 187
>pdb|4BAS|A Chain A, Structure Of The Arl6 Bbs3 Small Gtpase From Trypanosoma
Brucei With Bound Nucleotide Analogue Gppnp
Length = 199
Score = 77.8 bits (190), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 86/186 (46%), Gaps = 20/186 (10%)
Query: 14 LGLWQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYP--TSEELSIGKIKFKAFDL 71
+G + + +++ GLDNSGKTT+++ +K + T E G++ F FD+
Sbjct: 11 MGQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVETFEKGRVAFTVFDM 70
Query: 72 GGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESK-------RXXXXXXXXXXXXXVPF 124
GG + R +W+ YY +DAV++++D+ D R K + VPF
Sbjct: 71 GGAKKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPF 130
Query: 125 LILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEG 184
L NK+D A + EL + + + TT G+ P +F + ++ G EG
Sbjct: 131 LFFANKMDAAGAKTAAEL---VEILDLTTLMGD--------HPFVIFASNGLKGTGVHEG 179
Query: 185 FKWLSQ 190
F WL +
Sbjct: 180 FSWLQE 185
>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4
pdb|1Z6X|B Chain B, Structure Of Human Adp-Ribosylation Factor 4
Length = 180
Score = 77.4 bits (189), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 75/172 (43%), Gaps = 12/172 (6%)
Query: 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMA 77
+K+ +IL +GLD +GKTT+L+ LK +V PT E + I F +D+GG
Sbjct: 15 KKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDRI 74
Query: 78 RRVWKDYYAKVDAVVYLIDAYDKERFSESKRXXXXXXXXXXXXXVPFLILGNKIDIPYAA 137
R +WK Y+ +++++D+ D+ER E L+ NK D+P A
Sbjct: 75 RPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDELRDAVLLLFANKQDLPNAM 134
Query: 138 SEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLS 189
+ E+ +GL + R V + G EG WLS
Sbjct: 135 AISEMTDKLGLQSLRN------------RTWYVQATCATQGTGLYEGLDWLS 174
>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c
Length = 186
Score = 77.0 bits (188), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 71/133 (53%), Gaps = 1/133 (0%)
Query: 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQHQ-PTQYPTSEELSIGKIKFKAFDLGGHQM 76
++E ++ +GL SGKTT ++++ + + PT +++ G + K +D+GG
Sbjct: 20 KEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGNVTIKIWDIGGQPR 79
Query: 77 ARRVWKDYYAKVDAVVYLIDAYDKERFSESKRXXXXXXXXXXXXXVPFLILGNKIDIPYA 136
R +W+ Y V+A+VY+IDA D+E+ S+ +P L+LGNK D+P A
Sbjct: 80 FRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNKRDLPNA 139
Query: 137 ASEDELRYHMGLT 149
E +L M L+
Sbjct: 140 LDEKQLIEKMNLS 152
>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
Length = 188
Score = 77.0 bits (188), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 70/133 (52%), Gaps = 1/133 (0%)
Query: 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQHQ-PTQYPTSEELSIGKIKFKAFDLGGHQM 76
++E ++ +GL SGKTT ++++ + + PT +++ G + K +D+GG
Sbjct: 20 KEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPR 79
Query: 77 ARRVWKDYYAKVDAVVYLIDAYDKERFSESKRXXXXXXXXXXXXXVPFLILGNKIDIPYA 136
R +W+ Y V A+VY++DA D+E+ SK +P L+LGNK D+P A
Sbjct: 80 FRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGA 139
Query: 137 ASEDELRYHMGLT 149
E EL M L+
Sbjct: 140 LDEKELIEKMNLS 152
>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1
pdb|3DOF|A Chain A, Complex Of Arl2 And Bart, Crystal Form 2
Length = 192
Score = 76.6 bits (187), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 68/136 (50%)
Query: 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMA 77
++E ++L LGLDN+GKTT+L E + PT + L K +D+GG +
Sbjct: 14 ERELRLLMLGLDNAGKTTILKKFNGEDIDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSL 73
Query: 78 RRVWKDYYAKVDAVVYLIDAYDKERFSESKRXXXXXXXXXXXXXVPFLILGNKIDIPYAA 137
R W++Y+ D +++++D+ D++R + +R LI NK D+P A
Sbjct: 74 RSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGAL 133
Query: 138 SEDELRYHMGLTNFTT 153
S + +R + L + +
Sbjct: 134 SSNAIREVLELDSIRS 149
>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With
Brefeldin A
pdb|1R8S|A Chain A, Arf1[delta1-17]-Gdp In Complex With A Sec7 Domain Carrying
The Mutation Of The Catalytic Glutamate To Lysine
pdb|1S9D|A Chain A, Arf1[delta 1-17]-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1U81|A Chain A, Delta-17 Human Adp Ribosylation Factor 1 Complexed With
Gdp
Length = 164
Score = 76.3 bits (186), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 79/174 (45%), Gaps = 16/174 (9%)
Query: 22 KILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMARRVW 81
+IL +GLD +GKTT+L+ LK +V PT E + I F +D+GG R +W
Sbjct: 2 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLW 61
Query: 82 KDYYAKVDAVVYLIDAYDKERFSESKRXXXXXXXXXXXXXVPFLILGNKIDIPYAASEDE 141
+ Y+ +++++D+ D+ER +E++ L+ NK D+P A + E
Sbjct: 62 RHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAE 121
Query: 142 LRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYG--EGFKWLSQYIK 193
+ +GL + R ++ + G G EG WLS ++
Sbjct: 122 ITDKLGLHSL--------------RHRNWYIQATCATSGDGLYEGLDWLSNQLR 161
>pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex
With Arf1 Gtp Form
pdb|1O3Y|A Chain A, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|1O3Y|B Chain B, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|2J59|A Chain A, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|B Chain B, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|C Chain C, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|D Chain D, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|E Chain E, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|F Chain F, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
Length = 166
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 79/174 (45%), Gaps = 16/174 (9%)
Query: 22 KILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMARRVW 81
+IL +GLD +GKTT+L+ LK +V PT E + I F +D+GG R +W
Sbjct: 4 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGLDKIRPLW 63
Query: 82 KDYYAKVDAVVYLIDAYDKERFSESKRXXXXXXXXXXXXXVPFLILGNKIDIPYAASEDE 141
+ Y+ +++++D+ D+ER +E++ L+ NK D+P A + E
Sbjct: 64 RHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAE 123
Query: 142 LRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYG--EGFKWLSQYIK 193
+ +GL + R ++ + G G EG WLS ++
Sbjct: 124 ITDKLGLHSL--------------RHRNWYIQATCATSGDGLYEGLDWLSNQLR 163
>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native)
Length = 186
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 75/171 (43%), Gaps = 12/171 (7%)
Query: 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMA 77
++E ++L LGLDN+GKTT+L E + PT + L K +D+GG +
Sbjct: 16 ERELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSL 75
Query: 78 RRVWKDYYAKVDAVVYLIDAYDKERFSESKRXXXXXXXXXXXXXVPFLILGNKIDIPYAA 137
R W++Y+ D +++++D+ D++R + +R LI NK D+P A
Sbjct: 76 RSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGAL 135
Query: 138 SEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWL 188
S + ++ + LD+ + CS V G WL
Sbjct: 136 SXNAIQEAL------------ELDSIRSHHWRIQGCSAVTGEDLLPGIDWL 174
>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1
Length = 186
Score = 74.3 bits (181), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 75/171 (43%), Gaps = 12/171 (7%)
Query: 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMA 77
++E ++L LGLDN+GKTT+L E + PT + L K +D+GG +
Sbjct: 16 ERELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSL 75
Query: 78 RRVWKDYYAKVDAVVYLIDAYDKERFSESKRXXXXXXXXXXXXXVPFLILGNKIDIPYAA 137
R W++Y+ D +++++D+ D++R + +R LI NK D+P A
Sbjct: 76 RSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGAL 135
Query: 138 SEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWL 188
S + ++ + LD+ + CS V G WL
Sbjct: 136 SCNAIQEAL------------ELDSIRSHHWRIQGCSAVTGEDLLPGIDWL 174
>pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|B Chain B, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|C Chain C, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
Length = 190
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 79/180 (43%), Gaps = 18/180 (10%)
Query: 19 KEAKILFLGLDNSGKTTLLHMLKDERLVQHQ---PTQYPTSEELSIGKIKFKAFDLGGHQ 75
KE +L LGLDNSGKTT+++ LK Q Q PT + E+ + F FD+ G
Sbjct: 20 KEVHVLCLGLDNSGKTTIINKLKPSN-AQSQNILPTIGFSIEKFKSSSLSFTVFDMSGQG 78
Query: 76 MARRVWKDYYAKVDAVVYLIDAYDKERFSESKRXXXXXXXX--XXXXXVPFLILGNKIDI 133
R +W+ YY + A++++ID+ D+ R +K +P L NK+D+
Sbjct: 79 RYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDL 138
Query: 134 PYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYIK 193
A + ++ + L N +P + ++ G EG WL I+
Sbjct: 139 RDAVTSVKVSQLLCLENIKD------------KPWHICASDAIKGEGLQEGVDWLQDQIQ 186
>pdb|4GOK|B Chain B, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
pdb|4GOK|A Chain A, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
Length = 169
Score = 70.5 bits (171), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 72/167 (43%), Gaps = 12/167 (7%)
Query: 22 KILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMARRVW 81
++L LGLDN+GKTT+L E + PT + L K +D+GG + R W
Sbjct: 3 RLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGLKSLRSYW 62
Query: 82 KDYYAKVDAVVYLIDAYDKERFSESKRXXXXXXXXXXXXXVPFLILGNKIDIPYAASEDE 141
++Y+ D +++++D+ D++R + +R LI NK D+P A S +
Sbjct: 63 RNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNA 122
Query: 142 LRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWL 188
++ + LD+ + CS V G WL
Sbjct: 123 IQEAL------------ELDSIRSHHWRIQGCSAVTGEDLLPGIDWL 157
>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet)
Length = 186
Score = 63.2 bits (152), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 66/160 (41%), Gaps = 12/160 (7%)
Query: 29 DNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMARRVWKDYYAKV 88
DN+GKTT+L E + PT + L K +D+GG + R W++Y+
Sbjct: 27 DNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFEST 86
Query: 89 DAVVYLIDAYDKERFSESKRXXXXXXXXXXXXXVPFLILGNKIDIPYAASEDELRYHMGL 148
D +++++D+ D++R + +R LI NK D+P A S + ++ +
Sbjct: 87 DGLIWVVDSADRQRXQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSXNAIQEAL-- 144
Query: 149 TNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWL 188
LD+ + CS V G WL
Sbjct: 145 ----------ELDSIRSHHWRIQGCSAVTGEDLLPGIDWL 174
>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase
Length = 189
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 57/142 (40%), Gaps = 22/142 (15%)
Query: 9 GILVSLGLWQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIG-KIKFK 67
G LV G + KI+ +G N GKT L + R +P E +IG + +
Sbjct: 9 GSLVPRGSRSRIFKIIVIGDSNVGKTCLTYRFCAGR--------FPDRTEATIGVDFRER 60
Query: 68 AFDLGGHQMARRVW-------------KDYYAKVDAVVYLIDAYDKERFSESKRXXXXXX 114
A D+ G ++ ++W + YY V AVV++ D + F
Sbjct: 61 AVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECK 120
Query: 115 XXXXXXXVPFLILGNKIDIPYA 136
+P +++GNK D+ A
Sbjct: 121 QHLLANDIPRILVGNKCDLRSA 142
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 67/163 (41%), Gaps = 20/163 (12%)
Query: 22 KILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPT-----SEELSIGKIKFKAFDLGGHQM 76
K+L +G GK++LL D T + E++ K+K + +D G +
Sbjct: 11 KLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQER 70
Query: 77 ARRVWKDYYAKVDAVVYLIDAYDKERFSESKRXXXXXXXXXXXXXVPFLILGNKIDIP-- 134
R + YY V+ + D E F KR V +++GNK D P
Sbjct: 71 FRTITSTYYRGTHGVIVVYDVTSAESFVNVKR--WLHEINQNCDDVCRILVGNKNDDPER 128
Query: 135 -YAASEDELRY--HMGLTNF-TTGKGNVNLDNTNVRPLEVFMC 173
+ED ++ MG+ F T+ K NVN++ E+F C
Sbjct: 129 KVVETEDAYKFAGQMGIQLFETSAKENVNVE-------EMFNC 164
>pdb|1XZP|A Chain A, Structure Of The Gtp-Binding Protein Trme From Thermotoga
Maritima
pdb|1XZQ|A Chain A, Structure Of The Gtp-binding Protein Trme From Thermotoga
Maritima Complexed With 5-formyl-thf
Length = 482
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 71/152 (46%), Gaps = 25/152 (16%)
Query: 9 GILVSLGLWQKEAKILFLGLDNSGKTTLLHML--KDERLVQHQP--TQYPTSEELSIGKI 64
GIL++ GL +++ +G N GK+TLL+ L +D +V P T+ SEE+ I I
Sbjct: 237 GILLNRGL-----RMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGI 291
Query: 65 KFKAFDLGG-----HQMARRVWKDY----YAKVDAVVYLIDAYDKERFSESKRXXXXXXX 115
F+ D G + + R+ + K D V++++DA E R
Sbjct: 292 LFRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSP--LDEEDRKILERIK 349
Query: 116 XXXXXXVPFLILGNKIDIPYAASEDELRYHMG 147
+L++ NK+D+ +E+E++ +G
Sbjct: 350 NKR-----YLVVINKVDVVEKINEEEIKNKLG 376
>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33
Gtpase Bound To Gdp And Alf3
Length = 198
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 52/129 (40%), Gaps = 22/129 (17%)
Query: 22 KILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIG-KIKFKAFDLGGHQMARRV 80
KI+ +G N GKT L + R +P E +IG + +A D+ G ++ ++
Sbjct: 31 KIIVIGDSNVGKTCLTYRFCAGR--------FPDRTEATIGVDFRERAVDIDGERIKIQL 82
Query: 81 W-------------KDYYAKVDAVVYLIDAYDKERFSESKRXXXXXXXXXXXXXVPFLIL 127
W + YY V AVV++ D + F +P +++
Sbjct: 83 WDTAGQERFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLPAWIEECKQHLLANDIPRILV 142
Query: 128 GNKIDIPYA 136
GNK D+ A
Sbjct: 143 GNKCDLRSA 151
>pdb|2FH5|B Chain B, The Structure Of The Mammalian Srp Receptor
pdb|2GO5|2 Chain 2, Structure Of Signal Recognition Particle Receptor (Sr) In
Complex With Signal Recognition Particle (Srp) And
Ribosome Nascent Chain Complex
Length = 214
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 71/164 (43%), Gaps = 21/164 (12%)
Query: 23 ILFLGLDNSGKTTLLHMLKDERLV--QHQPTQYPTSEELSIGKI------KFKAFDLGGH 74
+LF+GL +SGKT L RL+ Q++ TQ ++ +I K+ DL GH
Sbjct: 10 VLFVGLCDSGKTLLFV-----RLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGH 64
Query: 75 QMAR-RVWKDYYAKVDAVVYLID--AYDKERFSESKRXXXXXXXXXXXXXVP-FLILGNK 130
+ R ++ + + AVV+++D A+ +E ++ P LI NK
Sbjct: 65 ESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNK 124
Query: 131 IDIPYAAS----EDELRYHMGLTNFTTGKGNVNLDNTNVRPLEV 170
DI A S + +L + T LD+++ P ++
Sbjct: 125 QDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQL 168
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 62/157 (39%), Gaps = 17/157 (10%)
Query: 22 KILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPT---SEELSIGKIK---FKAFDLGGHQ 75
K++ LG GKT+L+H +++ Q ++E+++ K + +D G +
Sbjct: 10 KVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQE 69
Query: 76 MARRVWKDYYAKVDAVVYLIDAYDKERFSESKR---XXXXXXXXXXXXXVPFLILGNKID 132
+ + +Y D V + D + F K PF+ILGNKID
Sbjct: 70 RFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKID 129
Query: 133 ------IPYAASEDELRYHMGLTN--FTTGKGNVNLD 161
I S EL +G T+ K +N+D
Sbjct: 130 AEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVD 166
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 35.8 bits (81), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 67/172 (38%), Gaps = 16/172 (9%)
Query: 22 KILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPT-----SEELSIGKIKFKAFDLGGHQM 76
K+L +G GK+ LL D+ + + + EL IK + +D G +
Sbjct: 18 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 77
Query: 77 ARRVWKDYYAKVDAVVYLIDAYDKERFSESKRXXXXXXXXXXXXXVPFLILGNKIDIPYA 136
R + YY ++ + D D+E F+ K+ V L++GNK D+
Sbjct: 78 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYASENVNKLLVGNKCDLTTK 136
Query: 137 ASED-----ELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRK-MGYG 182
D E +G+ T N TNV + M + ++K MG G
Sbjct: 137 KVVDYTTAKEFADSLGIPFLETSAKNA----TNVEQSFMTMAAEIKKRMGPG 184
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 35.0 bits (79), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 48/117 (41%), Gaps = 6/117 (5%)
Query: 22 KILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPT-----SEELSIGKIKFKAFDLGGHQM 76
K+L +G GK+ LL D+ + + + EL IK + +D G +
Sbjct: 27 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 86
Query: 77 ARRVWKDYYAKVDAVVYLIDAYDKERFSESKRXXXXXXXXXXXXXVPFLILGNKIDI 133
R + YY ++ + D D+E F+ K+ V L++GNK D+
Sbjct: 87 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYASENVNKLLVGNKCDL 142
>pdb|2LKC|A Chain A, Free B.St If2-G2
pdb|2LKD|A Chain A, If2-G2 Gdp Complex
Length = 178
Score = 35.0 bits (79), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 27/124 (21%), Positives = 55/124 (44%), Gaps = 8/124 (6%)
Query: 16 LWQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQP---TQYPTSEELSIGKIKFKAFDLG 72
+ ++ + +G + GKTTLL ++ ++ + + TQ+ + ++++ K D
Sbjct: 4 MVERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDKKITFLDTP 63
Query: 73 GHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRXXXXXXXXXXXXXVPFLILGNKID 132
GH+ A + A+V +V L+ A D ++ VP ++ NK+D
Sbjct: 64 GHE-AFTTMRARGAQVTDIVILVVAADDGVMPQT----VEAINHAKAANVPIIVAINKMD 118
Query: 133 IPYA 136
P A
Sbjct: 119 KPEA 122
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 35.0 bits (79), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 48/117 (41%), Gaps = 6/117 (5%)
Query: 22 KILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPT-----SEELSIGKIKFKAFDLGGHQM 76
K+L +G GK+ LL D+ + + + EL IK + +D G +
Sbjct: 35 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 94
Query: 77 ARRVWKDYYAKVDAVVYLIDAYDKERFSESKRXXXXXXXXXXXXXVPFLILGNKIDI 133
R + YY ++ + D D+E F+ K+ V L++GNK D+
Sbjct: 95 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYASENVNKLLVGNKCDL 150
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 35.0 bits (79), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 64/167 (38%), Gaps = 15/167 (8%)
Query: 22 KILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPT-----SEELSIGKIKFKAFDLGGHQM 76
K+L +G GK+ LL D+ + + + EL IK + +D G +
Sbjct: 8 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 67
Query: 77 ARRVWKDYYAKVDAVVYLIDAYDKERFSESKRXXXXXXXXXXXXXVPFLILGNKIDIPYA 136
R + YY ++ + D D+E F+ K+ V L++GNK D+
Sbjct: 68 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYASENVNKLLVGNKCDLTTK 126
Query: 137 ASED-----ELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRK 178
D E +G+ T N TNV + M + ++K
Sbjct: 127 KVVDYTTAKEFADSLGIPFLETSAKNA----TNVEQSFMTMAAEIKK 169
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 34.7 bits (78), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 48/118 (40%), Gaps = 6/118 (5%)
Query: 22 KILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPT-----SEELSIGKIKFKAFDLGGHQM 76
K+L +G GK+ LL D+ + + + EL IK + +D G +
Sbjct: 1 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 60
Query: 77 ARRVWKDYYAKVDAVVYLIDAYDKERFSESKRXXXXXXXXXXXXXVPFLILGNKIDIP 134
R + YY ++ + D D+E F+ K+ V L++GNK D+
Sbjct: 61 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYASENVNKLLVGNKCDLT 117
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 34.7 bits (78), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 64/167 (38%), Gaps = 15/167 (8%)
Query: 22 KILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPT-----SEELSIGKIKFKAFDLGGHQM 76
K+L +G GK+ LL D+ + + + EL IK + +D G +
Sbjct: 8 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 67
Query: 77 ARRVWKDYYAKVDAVVYLIDAYDKERFSESKRXXXXXXXXXXXXXVPFLILGNKIDIPYA 136
R + YY ++ + D D+E F+ K+ V L++GNK D+
Sbjct: 68 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYASENVNKLLVGNKCDLTTK 126
Query: 137 ASED-----ELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRK 178
D E +G+ T N TNV + M + ++K
Sbjct: 127 KVVDYTTAKEFADSLGIPFLETSAKNA----TNVEQSFMTMAAEIKK 169
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 34.3 bits (77), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 47/117 (40%), Gaps = 6/117 (5%)
Query: 22 KILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPT-----SEELSIGKIKFKAFDLGGHQM 76
K+L +G GK LL D+ + + + EL IK + +D G +
Sbjct: 18 KLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 77
Query: 77 ARRVWKDYYAKVDAVVYLIDAYDKERFSESKRXXXXXXXXXXXXXVPFLILGNKIDI 133
R + YY ++ + D D+E F+ K+ V L++GNK D+
Sbjct: 78 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYASENVNKLLVGNKCDL 133
>pdb|4FMC|F Chain F, Espg-Rab1 Complex
Length = 117
Score = 34.3 bits (77), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 47/117 (40%), Gaps = 6/117 (5%)
Query: 23 ILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPT-----SEELSIGKIKFKAFDLGGHQMA 77
+L +G GK+ LL D+ + + + EL IK + +D G +
Sbjct: 1 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 60
Query: 78 RRVWKDYYAKVDAVVYLIDAYDKERFSESKRXXXXXXXXXXXXXVPFLILGNKIDIP 134
R + YY ++ + D D+E F+ K+ V L++GNK D+
Sbjct: 61 RTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYASENVNKLLVGNKCDLT 116
>pdb|2BKU|A Chain A, Kap95p:rangtp Complex
pdb|2BKU|C Chain C, Kap95p:rangtp Complex
Length = 177
Score = 34.3 bits (77), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 52/128 (40%), Gaps = 7/128 (5%)
Query: 11 LVSLGLWQKEAKILFLGLDNSGKTTLL-HMLKDERLVQHQPT----QYPTSEELSIGKIK 65
+ + G Q + K++ +G +GKTT + L E ++ PT +P + G IK
Sbjct: 1 MAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIK 60
Query: 66 FKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRXXXXXXXXXXXXXVPFL 125
F +D G + + YY + + + D R + +P +
Sbjct: 61 FNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDV--TSRVTYKNVPNWHRDLVRVCENIPIV 118
Query: 126 ILGNKIDI 133
+ GNK+DI
Sbjct: 119 LCGNKVDI 126
>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 206
Score = 33.9 bits (76), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 32/150 (21%), Positives = 62/150 (41%), Gaps = 10/150 (6%)
Query: 22 KILFLGLDNSGKTTL-LHMLKDERLVQHQPTQ---YPTSEELSIGKIKFKAFDLGGHQMA 77
K++ +G GK+ L L + DE + ++PT+ Y L +++ D G +
Sbjct: 16 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 75
Query: 78 RRVWKDYYAKVDAVVYLIDAYDKERFSESKRXXXXXXXXXXXXXVPFLILGNKIDIP--- 134
+ +Y+ + + + + E F+ + VPFL++GNK D+
Sbjct: 76 AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKR 135
Query: 135 -YAASEDELRYHMGLTNF--TTGKGNVNLD 161
+ E + R N+ T+ K N+D
Sbjct: 136 QVSVEEAKNRAEQWNVNYVETSAKTRANVD 165
>pdb|1SHZ|A Chain A, Crystal Structure Of The P115rhogef Rgrgs Domain In A
Complex With Galpha(13):galpha(i1) Chimera
pdb|1SHZ|D Chain D, Crystal Structure Of The P115rhogef Rgrgs Domain In A
Complex With Galpha(13):galpha(i1) Chimera
Length = 340
Score = 33.9 bits (76), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 28/55 (50%)
Query: 45 LVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYD 99
L+ +PT+ + + FK FD+GG + R+ W + + V A+++ + D
Sbjct: 161 LLARRPTKGIHETHFTFKDLHFKMFDVGGQRSERKKWFECFEGVTAIIFCVALSD 215
>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
pdb|2EFD|B Chain B, Ara7ATVPS9A
pdb|2EFD|D Chain D, Ara7ATVPS9A
pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
Length = 181
Score = 33.9 bits (76), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 23/105 (21%), Positives = 49/105 (46%), Gaps = 5/105 (4%)
Query: 9 GILVSLGLWQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPT---SEELSI--GK 63
G + + G AK++ LG +GK++L+ ++ V+ Q + S+ L++
Sbjct: 1 GSMAAAGNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDAT 60
Query: 64 IKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKR 108
+KF+ +D G + + YY A + + D ++ F +K+
Sbjct: 61 VKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKK 105
>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Y|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
Length = 168
Score = 33.9 bits (76), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 25/116 (21%), Positives = 50/116 (43%), Gaps = 4/116 (3%)
Query: 22 KILFLGLDNSGKTTL-LHMLKDERLVQHQPTQ---YPTSEELSIGKIKFKAFDLGGHQMA 77
K++ +G GK+ L L + DE + ++PT+ Y L +++ D G +
Sbjct: 6 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 65
Query: 78 RRVWKDYYAKVDAVVYLIDAYDKERFSESKRXXXXXXXXXXXXXVPFLILGNKIDI 133
+ +Y+ + + + + E F+ + VPFL++GNK D+
Sbjct: 66 AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDL 121
>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|A Chain A, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
Length = 187
Score = 33.9 bits (76), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 32/150 (21%), Positives = 62/150 (41%), Gaps = 10/150 (6%)
Query: 22 KILFLGLDNSGKTTL-LHMLKDERLVQHQPTQ---YPTSEELSIGKIKFKAFDLGGHQMA 77
K++ +G GK+ L L + DE + ++PT+ Y L +++ D G +
Sbjct: 20 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 79
Query: 78 RRVWKDYYAKVDAVVYLIDAYDKERFSESKRXXXXXXXXXXXXXVPFLILGNKIDIP--- 134
+ +Y+ + + + + E F+ + VPFL++GNK D+
Sbjct: 80 AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKR 139
Query: 135 -YAASEDELRYHMGLTNF--TTGKGNVNLD 161
+ E + R N+ T+ K N+D
Sbjct: 140 QVSVEEAKNRAEQWNVNYVETSAKTRANVD 169
>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
pdb|1UAD|B Chain B, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
Length = 175
Score = 33.9 bits (76), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 32/150 (21%), Positives = 62/150 (41%), Gaps = 10/150 (6%)
Query: 22 KILFLGLDNSGKTTL-LHMLKDERLVQHQPTQ---YPTSEELSIGKIKFKAFDLGGHQMA 77
K++ +G GK+ L L + DE + ++PT+ Y L +++ D G +
Sbjct: 8 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 67
Query: 78 RRVWKDYYAKVDAVVYLIDAYDKERFSESKRXXXXXXXXXXXXXVPFLILGNKIDIP--- 134
+ +Y+ + + + + E F+ + VPFL++GNK D+
Sbjct: 68 AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKR 127
Query: 135 -YAASEDELRYHMGLTNF--TTGKGNVNLD 161
+ E + R N+ T+ K N+D
Sbjct: 128 QVSVEEAKNRAEQWNVNYVETSAKTRANVD 157
>pdb|2XTZ|A Chain A, Crystal Structure Of The G Alpha Protein Atgpa1 From
Arabidopsis Thaliana
pdb|2XTZ|B Chain B, Crystal Structure Of The G Alpha Protein Atgpa1 From
Arabidopsis Thaliana
pdb|2XTZ|C Chain C, Crystal Structure Of The G Alpha Protein Atgpa1 From
Arabidopsis Thaliana
Length = 354
Score = 33.5 bits (75), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 37/90 (41%), Gaps = 11/90 (12%)
Query: 54 PTSEELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYL--IDAYD--------KERF 103
P E G++ ++ FD+GG + RR W + V AV++ I YD K R
Sbjct: 174 PVGENKKSGEV-YRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRM 232
Query: 104 SESKRXXXXXXXXXXXXXVPFLILGNKIDI 133
E+K F++ NK DI
Sbjct: 233 METKELFDWVLKQPCFEKTSFMLFLNKFDI 262
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
Length = 181
Score = 33.5 bits (75), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 37/167 (22%), Positives = 64/167 (38%), Gaps = 15/167 (8%)
Query: 22 KILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPT-----SEELSIGKIKFKAFDLGGHQM 76
K+L +G GK+ LL D+ + + + EL IK + +D G +
Sbjct: 11 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 70
Query: 77 ARRVWKDYYAKVDAVVYLIDAYDKERFSESKRXXXXXXXXXXXXXVPFLILGNKIDIPYA 136
R + YY ++ + D D+E ++ K+ V L++GNK D+
Sbjct: 71 FRTITSSYYRGAHGIIVVYDVTDQESYANVKQ-WLQEIDRYASENVNKLLVGNKSDLTTK 129
Query: 137 ASED-----ELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRK 178
D E +G+ T N TNV + M + ++K
Sbjct: 130 KVVDNTTAKEFADSLGIPFLETSAKNA----TNVEQAFMTMAAEIKK 172
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 33.5 bits (75), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 39/92 (42%), Gaps = 5/92 (5%)
Query: 22 KILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPT-----SEELSIGKIKFKAFDLGGHQM 76
K+L +G GK+ LL D+ + + + EL IK + +D G +
Sbjct: 10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 69
Query: 77 ARRVWKDYYAKVDAVVYLIDAYDKERFSESKR 108
R + YY ++ + D D+E F+ K+
Sbjct: 70 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ 101
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
Length = 175
Score = 33.5 bits (75), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 37/167 (22%), Positives = 64/167 (38%), Gaps = 15/167 (8%)
Query: 22 KILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPT-----SEELSIGKIKFKAFDLGGHQM 76
K+L +G GK+ LL D+ + + + EL IK + +D G +
Sbjct: 11 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 70
Query: 77 ARRVWKDYYAKVDAVVYLIDAYDKERFSESKRXXXXXXXXXXXXXVPFLILGNKIDIPYA 136
R + YY ++ + D D+E ++ K+ V L++GNK D+
Sbjct: 71 FRTITSSYYRGAHGIIVVYDVTDQESYANVKQ-WLQEIDRYASENVNKLLVGNKSDLTTK 129
Query: 137 ASED-----ELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRK 178
D E +G+ T N TNV + M + ++K
Sbjct: 130 KVVDNTTAKEFADSLGIPFLETSAKNA----TNVEQAFMTMAAEIKK 172
>pdb|1BYU|A Chain A, Canine Gdp-Ran
pdb|1BYU|B Chain B, Canine Gdp-Ran
Length = 216
Score = 33.5 bits (75), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 52/128 (40%), Gaps = 7/128 (5%)
Query: 11 LVSLGLWQKEAKILFLGLDNSGKTTLL-HMLKDERLVQHQPT----QYPTSEELSIGKIK 65
+ + G Q + K++ +G +GKTT + L E ++ PT +P + G IK
Sbjct: 1 MAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIK 60
Query: 66 FKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRXXXXXXXXXXXXXVPFL 125
F +D G + + YY + + + D R + +P +
Sbjct: 61 FNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDV--TSRVTYKNVPNWHRDLVRVCENIPIV 118
Query: 126 ILGNKIDI 133
+ GNK+DI
Sbjct: 119 LCGNKVDI 126
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 33.5 bits (75), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 68/163 (41%), Gaps = 13/163 (7%)
Query: 22 KILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSI-----GKIKFKAFDLGGHQM 76
KIL +G + GKT+ L D+ + ++ +IK + +D G +
Sbjct: 7 KILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQER 66
Query: 77 ARRVWKDYYAKVDAVVYLIDAYDKERFSESKRXXXXXXXXXXXXXVPFLILGNKIDIP-- 134
R + YY + + D ++E F+ + + L++GNK D+
Sbjct: 67 YRTITTAYYRGAMGFILMYDITNEESFN-AVQDWSTQIKTYSWDNAQVLLVGNKCDMEDE 125
Query: 135 -YAASE--DELRYHMGLTNF-TTGKGNVNLDNTNVRPLEVFMC 173
+SE +L H+G F + K N+N+ T R ++V +C
Sbjct: 126 RVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDV-IC 167
>pdb|1ZCB|A Chain A, Crystal Structure Of G Alpha 13 In Complex With Gdp
pdb|3AB3|A Chain A, Crystal Structure Of P115rhogef Rgs Domain In Complex With
G Alpha 13
pdb|3AB3|C Chain C, Crystal Structure Of P115rhogef Rgs Domain In Complex With
G Alpha 13
Length = 362
Score = 33.1 bits (74), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 13/55 (23%), Positives = 30/55 (54%)
Query: 45 LVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYD 99
L+ +PT+ + I + FK D+GG + R+ W + + V ++++L+ + +
Sbjct: 182 LLARRPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSE 236
>pdb|3CX7|A Chain A, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex
With Galpha-13 Bound To Gdp-Alf4
pdb|3CX8|A Chain A, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex
With Galpha-13 Bound To Gtp-Gamma-S
Length = 338
Score = 33.1 bits (74), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 13/53 (24%), Positives = 29/53 (54%)
Query: 45 LVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDA 97
L+ +PT+ + I + FK D+GG + R+ W + + V ++++L+ +
Sbjct: 158 LLARRPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSS 210
>pdb|1CJK|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5'-(Alpha Thio)-Triphosphate (Rp), Mg, And Mn
pdb|1CJT|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mn, And Mg
pdb|1CJU|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp And Mg
pdb|1CJV|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mg, And Zn
pdb|1TL7|C Chain C, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With 2'(3')-O-(N-
Methylanthraniloyl)-Guanosine 5'-Triphosphate And Mn
Length = 402
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 22/38 (57%)
Query: 58 ELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLI 95
+ + K+ F FD+GG + RR W + V A+++++
Sbjct: 211 KFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVV 248
>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS
Length = 184
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 4/81 (4%)
Query: 20 EAKILFLGLDNSGKTTLLHML-KDERLVQHQPT---QYPTSEELSIGKIKFKAFDLGGHQ 75
+ KI+ +G GKT LLH+ KD + PT Y S E+ +I+ +D G
Sbjct: 7 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSP 66
Query: 76 MARRVWKDYYAKVDAVVYLID 96
V Y DAV+ D
Sbjct: 67 YYDNVRPLSYPDSDAVLICFD 87
>pdb|1CS4|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2'-Deoxy-Adenosine 3'- Monophosphate, Pyrophosphate And
Mg
pdb|1U0H|C Chain C, Structural Basis For The Inhibition Of Mammalian Adenylyl
Cyclase By Mant-gtp
pdb|2GVD|C Chain C, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With Tnp-Atp And Mn
pdb|2GVZ|C Chain C, Crystal Structure Of Complex Of Gs- With The Catalytic
Domains Of Mammalian Adenylyl Cyclase: Complex With
Mant- Atp And Mn
pdb|3G82|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Mant-Itp And Mn
pdb|3MAA|C Chain C, Complex Of Gs-alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5-o-(l-thiophosphate) And Low Ca Concentration
Length = 394
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 22/38 (57%)
Query: 58 ELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLI 95
+ + K+ F FD+GG + RR W + V A+++++
Sbjct: 211 KFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVV 248
>pdb|3SN6|A Chain A, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 380
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 22/38 (57%)
Query: 58 ELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLI 95
+ + K+ F FD+GG + RR W + V A+++++
Sbjct: 197 KFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVV 234
>pdb|1CUL|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2',5'-Dideoxy-Adenosine 3'- Triphosphate And Mg
Length = 380
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 22/38 (57%)
Query: 58 ELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLI 95
+ + K+ F FD+GG + RR W + V A+++++
Sbjct: 197 KFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVV 234
>pdb|1AZS|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase
pdb|1AZT|A Chain A, Gs-Alpha Complexed With Gtp-Gamma-S
pdb|1AZT|B Chain B, Gs-Alpha Complexed With Gtp-Gamma-S
pdb|3C14|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Ca
pdb|3C15|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Mg
pdb|3C16|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Adenosine-5'-Triphosphate And Ca
Length = 402
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 22/38 (57%)
Query: 58 ELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLI 95
+ + K+ F FD+GG + RR W + V A+++++
Sbjct: 211 KFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVV 248
>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
pdb|1GWN|C Chain C, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
Length = 205
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 4/81 (4%)
Query: 20 EAKILFLGLDNSGKTTLLHML-KDERLVQHQPT---QYPTSEELSIGKIKFKAFDLGGHQ 75
+ KI+ +G GKT LLH+ KD + PT Y S E+ +I+ +D G
Sbjct: 28 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSP 87
Query: 76 MARRVWKDYYAKVDAVVYLID 96
V Y DAV+ D
Sbjct: 88 YYDNVRPLSYPDSDAVLICFD 108
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 51/128 (39%), Gaps = 6/128 (4%)
Query: 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSI-----GKIKFKAFDLG 72
QK KI+ G GK++ L L ++ ++ + + +D
Sbjct: 26 QKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTA 85
Query: 73 GHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRXXXXXXXXXXXXXVPFLILGNKID 132
G + R + K Y+ K D V+ L D ++ F + R VP +++GNK D
Sbjct: 86 GQERFRSIAKSYFRKADGVLLLYDVTCEKSFL-NIREWVDMIEDAAHETVPIMLVGNKAD 144
Query: 133 IPYAASED 140
I A+ +
Sbjct: 145 IRDTAATE 152
>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC3|C Chain C, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|A Chain A, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|C Chain C, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
Length = 175
Score = 32.3 bits (72), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 32/150 (21%), Positives = 62/150 (41%), Gaps = 10/150 (6%)
Query: 22 KILFLGLDNSGKTTL-LHMLKDERLVQHQPTQ---YPTSEELSIGKIKFKAFDLGGHQMA 77
K++ +G GK+ L L + DE + ++PT+ Y L +++ D G +
Sbjct: 8 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGLEDY 67
Query: 78 RRVWKDYYAKVDAVVYLIDAYDKERFSESKRXXXXXXXXXXXXXVPFLILGNKIDIP--- 134
+ +Y+ + + + + E F+ + VPFL++GNK D+
Sbjct: 68 AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKR 127
Query: 135 -YAASEDELRYHMGLTNF--TTGKGNVNLD 161
+ E + R N+ T+ K N+D
Sbjct: 128 QVSVEEAKNRAEQWNVNYVETSAKTRANVD 157
>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
pdb|2V55|D Chain D, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
Length = 200
Score = 32.3 bits (72), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 4/81 (4%)
Query: 20 EAKILFLGLDNSGKTTLLHML-KDERLVQHQPT---QYPTSEELSIGKIKFKAFDLGGHQ 75
+ KI+ +G GKT LLH+ KD + PT Y S E+ +I+ +D G
Sbjct: 23 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSP 82
Query: 76 MARRVWKDYYAKVDAVVYLID 96
V Y DAV+ D
Sbjct: 83 YYDNVRPLSYPDSDAVLICFD 103
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With
Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 32.0 bits (71), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 45/118 (38%), Gaps = 6/118 (5%)
Query: 22 KILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPT-----SEELSIGKIKFKAFDLGGHQM 76
K+L +G GK+ LL D+ + + EL +K + +D G +
Sbjct: 10 KLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQER 69
Query: 77 ARRVWKDYYAKVDAVVYLIDAYDKERFSESKRXXXXXXXXXXXXXVPFLILGNKIDIP 134
R + YY ++ + D D+E F+ K + L+ GNK D+
Sbjct: 70 FRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLV-GNKCDLK 126
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 32.0 bits (71), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 45/117 (38%), Gaps = 6/117 (5%)
Query: 22 KILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPT-----SEELSIGKIKFKAFDLGGHQM 76
K+L +G GK+ LL D+ + + EL +K + +D G +
Sbjct: 23 KLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQER 82
Query: 77 ARRVWKDYYAKVDAVVYLIDAYDKERFSESKRXXXXXXXXXXXXXVPFLILGNKIDI 133
R + YY ++ + D D+E F+ K + L+ GNK D+
Sbjct: 83 FRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLV-GNKCDL 138
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 32.0 bits (71), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 45/118 (38%), Gaps = 6/118 (5%)
Query: 22 KILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPT-----SEELSIGKIKFKAFDLGGHQM 76
K+L +G GK+ LL D+ + + EL +K + +D G +
Sbjct: 10 KLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQER 69
Query: 77 ARRVWKDYYAKVDAVVYLIDAYDKERFSESKRXXXXXXXXXXXXXVPFLILGNKIDIP 134
R + YY ++ + D D+E F+ K + L+ GNK D+
Sbjct: 70 FRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLV-GNKCDLK 126
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 32.0 bits (71), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 49/120 (40%), Gaps = 7/120 (5%)
Query: 22 KILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSE------ELSIGKIKFKAFDLGGHQ 75
K++ +G GKT LL KD + + ++ K+K + +D G +
Sbjct: 12 KVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQE 71
Query: 76 MARRVWKDYYAKVDAVVYLIDAYDKERFSESKRXXXXXXXXXXXXXVPFLILGNKIDIPY 135
R V YY A++ L D +K F ++ + V ++LGNK+D +
Sbjct: 72 RFRSVTHAYYRDAHALLLLYDVTNKASF-DNIQAWLTEIHEYAQHDVALMLLGNKVDSAH 130
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 32.0 bits (71), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 5/88 (5%)
Query: 22 KILFLGLDNSGKTTLLHMLKDERLVQ---HQPTQYPTSEELSIG--KIKFKAFDLGGHQM 76
K L +G +GK+ LLH + + Q H S +++G +K + +D G +
Sbjct: 27 KFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQER 86
Query: 77 ARRVWKDYYAKVDAVVYLIDAYDKERFS 104
R V + YY + + D +E ++
Sbjct: 87 FRSVTRSYYRGAAGALLVYDITSRETYN 114
>pdb|3CX6|A Chain A, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex
With Galpha-13 Bound To Gdp
Length = 338
Score = 31.6 bits (70), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 13/53 (24%), Positives = 29/53 (54%)
Query: 45 LVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDA 97
L+ +PT+ + I + FK D+GG + R+ W + + V ++++L+ +
Sbjct: 158 LLARRPTKGIHEYDFEIKNVPFKMVDVGGLRSERKRWFECFDSVTSILFLVSS 210
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 31.6 bits (70), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 48/117 (41%), Gaps = 6/117 (5%)
Query: 22 KILFLGLDNSGKTTLLHMLKDERLVQHQP----TQYPTSE-ELSIGKIKFKAFDLGGHQM 76
K + +G GK+ LLH +++ + P ++ T E+S KIK + +D G +
Sbjct: 17 KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQER 76
Query: 77 ARRVWKDYYAKVDAVVYLIDAYDKERFSESKRXXXXXXXXXXXXXVPFLILGNKIDI 133
R V + YY + + D + ++ V LI GNK D+
Sbjct: 77 FRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILI-GNKADL 132
>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
pdb|1S8F|B Chain B, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
Length = 177
Score = 31.2 bits (69), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 49/120 (40%), Gaps = 8/120 (6%)
Query: 22 KILFLGLDNSGKTTLLHMLK----DERLVQHQPTQYPTSE-ELSIGKIKFKAFDLGGHQM 76
K++ LG GK++L++ D +L ++ + E+ + + +D G +
Sbjct: 11 KVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQER 70
Query: 77 ARRVWKDYYAKVDAVVYLIDAYDKERF---SESKRXXXXXXXXXXXXXVPFLILGNKIDI 133
R + +Y D + D + F S K+ PF+ILGNKIDI
Sbjct: 71 FRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDI 130
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue
Length = 201
Score = 31.2 bits (69), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 49/122 (40%), Gaps = 16/122 (13%)
Query: 22 KILFLGLDNSGKTTLLHMLKDERLVQ--HQPTQYPT--------SEELSIGKIKFKAFDL 71
KI+ +G GKT L+ R Q P Q T + E++ K+K + +D
Sbjct: 28 KIVLIGNAGVGKTCLVR-----RFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDT 82
Query: 72 GGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRXXXXXXXXXXXXXVPFLILGNKI 131
G + R + + YY +A++ D +E F + L+ GNKI
Sbjct: 83 AGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLV-GNKI 141
Query: 132 DI 133
D+
Sbjct: 142 DL 143
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 31.2 bits (69), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 23/117 (19%), Positives = 46/117 (39%), Gaps = 6/117 (5%)
Query: 22 KILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPT-----SEELSIGKIKFKAFDLGGHQM 76
+++ +G GKT+L+ D+ + + + EL KI+ + +D G +
Sbjct: 28 QVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQER 87
Query: 77 ARRVWKDYYAKVDAVVYLIDAYDKERFSESKRXXXXXXXXXXXXXVPFLILGNKIDI 133
+ YY ++ + D KE F + + L++GNK+D
Sbjct: 88 FNSITSAYYRSAKGIILVYDITKKETFDDLPK-WMKMIDKYASEDAELLLVGNKLDC 143
>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
pdb|1WMS|B Chain B, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
Length = 177
Score = 31.2 bits (69), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 49/120 (40%), Gaps = 8/120 (6%)
Query: 22 KILFLGLDNSGKTTLLHMLK----DERLVQHQPTQYPTSE-ELSIGKIKFKAFDLGGHQM 76
K++ LG GK++L++ D +L ++ + E+ + + +D G +
Sbjct: 9 KVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQER 68
Query: 77 ARRVWKDYYAKVDAVVYLIDAYDKERF---SESKRXXXXXXXXXXXXXVPFLILGNKIDI 133
R + +Y D + D + F S K+ PF+ILGNKIDI
Sbjct: 69 FRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDI 128
>pdb|3ONW|A Chain A, Structure Of A G-Alpha-I1 Mutant With Enhanced Affinity
For The Rgs14 Goloco Motif.
pdb|3ONW|B Chain B, Structure Of A G-Alpha-I1 Mutant With Enhanced Affinity
For The Rgs14 Goloco Motif
Length = 328
Score = 31.2 bits (69), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 15/66 (22%)
Query: 49 QPTQYPTSEELSIGKIK---------------FKAFDLGGHQMARRVWKDYYAKVDAVVY 93
QP PT +++ ++K FK FD+GG + R+ W + V A+++
Sbjct: 138 QPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIF 197
Query: 94 LIDAYD 99
+ D
Sbjct: 198 CVALSD 203
>pdb|2GTP|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs1 And Activated Gi Alpha 1
pdb|2GTP|B Chain B, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs1 And Activated Gi Alpha 1
Length = 323
Score = 31.2 bits (69), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 15/66 (22%)
Query: 49 QPTQYPTSEELSIGKIK---------------FKAFDLGGHQMARRVWKDYYAKVDAVVY 93
QP PT +++ ++K FK FD+GG + R+ W + V A+++
Sbjct: 133 QPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIF 192
Query: 94 LIDAYD 99
+ D
Sbjct: 193 CVALSD 198
>pdb|3D7M|A Chain A, Crystal Structure Of The G Protein Fast-Exchange Double
Mutant I56cQ333C
Length = 354
Score = 31.2 bits (69), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 15/66 (22%)
Query: 49 QPTQYPTSEELSIGKIK---------------FKAFDLGGHQMARRVWKDYYAKVDAVVY 93
QP PT +++ ++K FK FD+GG + R+ W + V A+++
Sbjct: 164 QPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIF 223
Query: 94 LIDAYD 99
+ D
Sbjct: 224 CVALSD 229
>pdb|2IK8|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs16 And Activated Gi Alpha 1
pdb|2IK8|C Chain C, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs16 And Activated Gi Alpha 1
Length = 324
Score = 31.2 bits (69), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 15/66 (22%)
Query: 49 QPTQYPTSEELSIGKIK---------------FKAFDLGGHQMARRVWKDYYAKVDAVVY 93
QP PT +++ ++K FK FD+GG + R+ W + V A+++
Sbjct: 134 QPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIF 193
Query: 94 LIDAYD 99
+ D
Sbjct: 194 CVALSD 199
>pdb|3QI2|A Chain A, A Galpha P-Loop Mutation Prevents Transition To The
Activated State: G42r Bound To Rgs14 Goloco
pdb|3QI2|B Chain B, A Galpha P-Loop Mutation Prevents Transition To The
Activated State: G42r Bound To Rgs14 Goloco
Length = 328
Score = 31.2 bits (69), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 15/66 (22%)
Query: 49 QPTQYPTSEELSIGKIK---------------FKAFDLGGHQMARRVWKDYYAKVDAVVY 93
QP PT +++ ++K FK FD+GG + R+ W + V A+++
Sbjct: 138 QPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIF 197
Query: 94 LIDAYD 99
+ D
Sbjct: 198 CVALSD 203
>pdb|3QE0|A Chain A, A Galpha-I1 P-Loop Mutation Prevents Transition To The
Activated State
pdb|3QE0|B Chain B, A Galpha-I1 P-Loop Mutation Prevents Transition To The
Activated State
pdb|3QE0|C Chain C, A Galpha-I1 P-Loop Mutation Prevents Transition To The
Activated State
Length = 325
Score = 30.8 bits (68), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 15/66 (22%)
Query: 49 QPTQYPTSEELSIGKIK---------------FKAFDLGGHQMARRVWKDYYAKVDAVVY 93
QP PT +++ ++K FK FD+GG + R+ W + V A+++
Sbjct: 135 QPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIF 194
Query: 94 LIDAYD 99
+ D
Sbjct: 195 CVALSD 200
>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex
Length = 182
Score = 30.8 bits (68), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 29/130 (22%), Positives = 52/130 (40%), Gaps = 7/130 (5%)
Query: 9 GILVSLGLWQKEAKILFLGLDNSGKTTLL-HMLKDERLVQHQPT----QYPTSEELSIGK 63
G + + G Q + K++ +G +GKTT + L E ++ T +P + G
Sbjct: 1 GSMAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGP 60
Query: 64 IKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRXXXXXXXXXXXXXVP 123
IKF +D G + + YY + + + D R + +P
Sbjct: 61 IKFNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDV--TSRVTYKNVPNWHRDLVRVCENIP 118
Query: 124 FLILGNKIDI 133
++ GNK+DI
Sbjct: 119 IVLCGNKVDI 128
>pdb|1KJY|A Chain A, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
pdb|1KJY|C Chain C, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
pdb|2OM2|A Chain A, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
pdb|2OM2|C Chain C, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
Length = 325
Score = 30.8 bits (68), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 15/66 (22%)
Query: 49 QPTQYPTSEELSIGKIK---------------FKAFDLGGHQMARRVWKDYYAKVDAVVY 93
QP PT +++ ++K FK FD+GG + R+ W + V A+++
Sbjct: 135 QPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIF 194
Query: 94 LIDAYD 99
+ D
Sbjct: 195 CVALSD 200
>pdb|2XNS|A Chain A, Crystal Structure Of Human G Alpha I1 Bound To A Designed
Helical Peptide Derived From The Goloco Motif Of Rgs14
pdb|2XNS|B Chain B, Crystal Structure Of Human G Alpha I1 Bound To A Designed
Helical Peptide Derived From The Goloco Motif Of Rgs14
Length = 327
Score = 30.8 bits (68), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 15/66 (22%)
Query: 49 QPTQYPTSEELSIGKIK---------------FKAFDLGGHQMARRVWKDYYAKVDAVVY 93
QP PT +++ ++K FK FD+GG + R+ W + V A+++
Sbjct: 137 QPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIF 196
Query: 94 LIDAYD 99
+ D
Sbjct: 197 CVALSD 202
>pdb|1AS0|A Chain A, Gtp-Gamma-S Bound G42v Gia1
pdb|1AS2|A Chain A, Gdp+pi Bound G42v Gia1
pdb|1AS3|A Chain A, Gdp Bound G42v Gia1
Length = 353
Score = 30.8 bits (68), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 15/66 (22%)
Query: 49 QPTQYPTSEELSIGKIK---------------FKAFDLGGHQMARRVWKDYYAKVDAVVY 93
QP PT +++ ++K FK FD+GG + R+ W + V A+++
Sbjct: 163 QPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIF 222
Query: 94 LIDAYD 99
+ D
Sbjct: 223 CVALSD 228
>pdb|3FFA|A Chain A, Crystal Structure Of A Fast Activating G Protein Mutant
pdb|3FFB|A Chain A, Gi-Alpha-1 Mutant In Gdp Bound Form
Length = 360
Score = 30.8 bits (68), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 15/66 (22%)
Query: 49 QPTQYPTSEELSIGKIK---------------FKAFDLGGHQMARRVWKDYYAKVDAVVY 93
QP PT +++ ++K FK FD+GG + R+ W + V A+++
Sbjct: 170 QPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIF 229
Query: 94 LIDAYD 99
+ D
Sbjct: 230 CVALSD 235
>pdb|2ZJY|A Chain A, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound
To Alf4 And Gdp
pdb|2ZJZ|A Chain A, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound
To Gdp
pdb|2ZJZ|B Chain B, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound
To Gdp
Length = 356
Score = 30.8 bits (68), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 15/66 (22%)
Query: 49 QPTQYPTSEELSIGKIK---------------FKAFDLGGHQMARRVWKDYYAKVDAVVY 93
QP PT +++ ++K FK FD+GG + R+ W + V A+++
Sbjct: 166 QPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIF 225
Query: 94 LIDAYD 99
+ D
Sbjct: 226 CVALSD 231
>pdb|1Y3A|A Chain A, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
pdb|1Y3A|B Chain B, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
pdb|1Y3A|C Chain C, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
pdb|1Y3A|D Chain D, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
Length = 329
Score = 30.8 bits (68), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 15/66 (22%)
Query: 49 QPTQYPTSEELSIGKIK---------------FKAFDLGGHQMARRVWKDYYAKVDAVVY 93
QP PT +++ ++K FK FD+GG + R+ W + V A+++
Sbjct: 139 QPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIF 198
Query: 94 LIDAYD 99
+ D
Sbjct: 199 CVALSD 204
>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 176
Score = 30.8 bits (68), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 28/128 (21%), Positives = 51/128 (39%), Gaps = 7/128 (5%)
Query: 11 LVSLGLWQKEAKILFLGLDNSGKTTLL-HMLKDERLVQHQPT----QYPTSEELSIGKIK 65
+ + G Q + K++ +G +GKTT + L E ++ T +P + G IK
Sbjct: 1 MAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIK 60
Query: 66 FKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRXXXXXXXXXXXXXVPFL 125
F +D G + + YY + + + D R + +P +
Sbjct: 61 FNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDV--TSRVTYKNVPNWHRDLVRVCENIPIV 118
Query: 126 ILGNKIDI 133
+ GNK+DI
Sbjct: 119 LCGNKVDI 126
>pdb|1BH2|A Chain A, A326s Mutant Of An Inhibitory Alpha Subunit
Length = 315
Score = 30.8 bits (68), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 15/66 (22%)
Query: 49 QPTQYPTSEELSIGKIK---------------FKAFDLGGHQMARRVWKDYYAKVDAVVY 93
QP PT +++ ++K FK FD+GG + R+ W + V A+++
Sbjct: 133 QPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIF 192
Query: 94 LIDAYD 99
+ D
Sbjct: 193 CVALSD 198
>pdb|4G5Q|A Chain A, Structure Of Lgn Gl4GALPHAI1 COMPLEX
pdb|4G5Q|B Chain B, Structure Of Lgn Gl4GALPHAI1 COMPLEX
pdb|4G5Q|C Chain C, Structure Of Lgn Gl4GALPHAI1 COMPLEX
pdb|4G5Q|D Chain D, Structure Of Lgn Gl4GALPHAI1 COMPLEX
Length = 330
Score = 30.8 bits (68), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 15/66 (22%)
Query: 49 QPTQYPTSEELSIGKIK---------------FKAFDLGGHQMARRVWKDYYAKVDAVVY 93
QP PT +++ ++K FK FD+GG + R+ W + V A+++
Sbjct: 140 QPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIF 199
Query: 94 LIDAYD 99
+ D
Sbjct: 200 CVALSD 205
>pdb|1GP2|A Chain A, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1AGR|A Chain A, Complex Of Alf4-Activated Gi-Alpha-1 With Rgs4
pdb|1AGR|D Chain D, Complex Of Alf4-Activated Gi-Alpha-1 With Rgs4
pdb|1CIP|A Chain A, Gi-Alpha-1 Subunit Of Guanine Nucleotide-Binding Protein
Complexed With A Gtp Analogue
pdb|1BOF|A Chain A, Gi-Alpha-1 Bound To Gdp And Magnesium
pdb|1GDD|A Chain A, Tertiary And Quaternary Structural Changes In Gia1 Induced
By Gtp Hydrolysis
pdb|1GFI|A Chain A, Structures Of Active Conformations Of Gi Alpha 1 And The
Mechanism Of Gtp Hydrolysis
pdb|1GIA|A Chain A, Structure Of Active Conformations Of Gia1 And The
Mechanism Of Gtp Hydrolysis
Length = 353
Score = 30.8 bits (68), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 15/66 (22%)
Query: 49 QPTQYPTSEELSIGKIK---------------FKAFDLGGHQMARRVWKDYYAKVDAVVY 93
QP PT +++ ++K FK FD+GG + R+ W + V A+++
Sbjct: 163 QPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIF 222
Query: 94 LIDAYD 99
+ D
Sbjct: 223 CVALSD 228
>pdb|1SVK|A Chain A, Structure Of The K180p Mutant Of Gi Alpha Subunit Bound To
Alf4 And Gdp
pdb|1SVS|A Chain A, Structure Of The K180p Mutant Of Gi Alpha Subunit Bound To
Gppnhp
Length = 353
Score = 30.8 bits (68), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 23/50 (46%)
Query: 50 PTQYPTSEELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYD 99
PT + + FK FD+GG + R+ W + V A+++ + D
Sbjct: 179 PTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSD 228
>pdb|2G83|A Chain A, Structure Of Activated G-alpha-i1 Bound To A Nucleotide-
State-selective Peptide: Minimal Determinants For
Recognizing The Active Form Of A G Protein Alpha Subunit
pdb|2G83|B Chain B, Structure Of Activated G-alpha-i1 Bound To A Nucleotide-
State-selective Peptide: Minimal Determinants For
Recognizing The Active Form Of A G Protein Alpha Subunit
Length = 313
Score = 30.8 bits (68), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 15/66 (22%)
Query: 49 QPTQYPTSEELSIGKIK---------------FKAFDLGGHQMARRVWKDYYAKVDAVVY 93
QP PT +++ ++K FK FD+GG + R+ W + V A+++
Sbjct: 132 QPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIF 191
Query: 94 LIDAYD 99
+ D
Sbjct: 192 CVALSD 197
>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 30.4 bits (67), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 34/155 (21%), Positives = 62/155 (40%), Gaps = 18/155 (11%)
Query: 22 KILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPT--------SEELSIGKIKFKAFDLGG 73
K+L +G GKT +L ++ T T + EL +IK + +D G
Sbjct: 10 KLLLIGDSGVGKTCVLFRFSEDAF---NSTFISTIGIDFKIRTIELDGKRIKLQIWDTAG 66
Query: 74 HQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRXXXXXXXXXXXXXVPFLILGNKIDI 133
+ R + YY ++ + D +++ F ++ R V +ILGNK D+
Sbjct: 67 QERFRTITTAYYRGAMGIMLVYDITNEKSF-DNIRNWIRNIEEHASADVEKMILGNKCDV 125
Query: 134 PYAASEDELRYHMGLTNF------TTGKGNVNLDN 162
+ R ++ T+ K N+N++N
Sbjct: 126 NDKRQVSKERGEKLALDYGIKFMETSAKANINVEN 160
>pdb|1FQJ|A Chain A, Crystal Structure Of The Heterotrimeric Complex Of The Rgs
Domain Of Rgs9, The Gamma Subunit Of Phosphodiesterase
And The GtI1 CHIMERA ALPHA SUBUNIT [(RGS9)-(Pdegamma)-
(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQJ|D Chain D, Crystal Structure Of The Heterotrimeric Complex Of The Rgs
Domain Of Rgs9, The Gamma Subunit Of Phosphodiesterase
And The GtI1 CHIMERA ALPHA SUBUNIT [(RGS9)-(Pdegamma)-
(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQK|A Chain A, Crystal Structure Of The Heterodimeric Complex Of The Rgs
Domain Of Rgs9, And The GtI1 CHIMERA ALPHA SUBUNIT
[(Rgs9)-(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQK|C Chain C, Crystal Structure Of The Heterodimeric Complex Of The Rgs
Domain Of Rgs9, And The GtI1 CHIMERA ALPHA SUBUNIT
[(Rgs9)-(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
Length = 325
Score = 30.4 bits (67), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 11/42 (26%), Positives = 22/42 (52%)
Query: 58 ELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYD 99
+ S + F+ FD+GG + R+ W + V A+++ + D
Sbjct: 159 QFSFKDLNFRMFDVGGQRSERKKWIHCFEGVTAIIFCVALSD 200
>pdb|3V00|C Chain C, Studies Of A Constitutively Active G-Alpha Subunit Provide
Insights Into The Mechanism Of G Protein Activation.
pdb|3V00|B Chain B, Studies Of A Constitutively Active G-Alpha Subunit Provide
Insights Into The Mechanism Of G Protein Activation.
pdb|3V00|A Chain A, Studies Of A Constitutively Active G-Alpha Subunit Provide
Insights Into The Mechanism Of G Protein Activation
Length = 356
Score = 30.4 bits (67), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 11/42 (26%), Positives = 22/42 (52%)
Query: 58 ELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYD 99
+ S + F+ FD+GG + R+ W + V A+++ + D
Sbjct: 190 QFSFKDLNFRMFDVGGQRSERKKWIHCFEGVTAIIFCVALSD 231
>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase
Length = 179
Score = 30.4 bits (67), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 48/120 (40%), Gaps = 8/120 (6%)
Query: 22 KILFLGLDNSGKTTLLHMLK----DERLVQHQPTQYPTSE-ELSIGKIKFKAFDLGGHQM 76
KI+ LG GK++L++ D +L ++ + E+ + + +D G +
Sbjct: 13 KIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQER 72
Query: 77 ARRVWKDYYAKVDAVVYLIDAYDKERF---SESKRXXXXXXXXXXXXXVPFLILGNKIDI 133
R + +Y D + D + F S K+ PF+ILGNK DI
Sbjct: 73 FRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKTDI 132
>pdb|1GOT|A Chain A, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
Length = 350
Score = 30.4 bits (67), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 11/42 (26%), Positives = 22/42 (52%)
Query: 58 ELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYD 99
+ S + F+ FD+GG + R+ W + V A+++ + D
Sbjct: 184 QFSFKDLNFRXFDVGGQRSERKKWIHCFEGVTAIIFCVALSD 225
>pdb|4FID|A Chain A, Crystal Structure Of A Heterotrimeric G-Protein Subunit
From Entamoeba Histolytica, Ehg-Alpha-1
pdb|4FID|B Chain B, Crystal Structure Of A Heterotrimeric G-Protein Subunit
From Entamoeba Histolytica, Ehg-Alpha-1
Length = 340
Score = 30.4 bits (67), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 9/34 (26%), Positives = 19/34 (55%)
Query: 61 IGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYL 94
+ I F D+GG + R+ W +++ VD +++
Sbjct: 158 VKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFV 191
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 30.4 bits (67), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 47/117 (40%), Gaps = 6/117 (5%)
Query: 22 KILFLGLDNSGKTTLLHMLKDERLVQHQP----TQYPTSE-ELSIGKIKFKAFDLGGHQM 76
K + +G GK+ LLH +++ + P ++ T E+S KIK + +D G
Sbjct: 32 KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQGR 91
Query: 77 ARRVWKDYYAKVDAVVYLIDAYDKERFSESKRXXXXXXXXXXXXXVPFLILGNKIDI 133
R V + YY + + D + ++ V LI GNK D+
Sbjct: 92 FRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILI-GNKADL 147
>pdb|3B1X|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob E66a Mutant
Bound To Gmppnp
pdb|3B1X|B Chain B, Crystal Structure Of An S. Thermophilus Nfeob E66a Mutant
Bound To Gmppnp
Length = 272
Score = 30.4 bits (67), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 32/148 (21%), Positives = 65/148 (43%), Gaps = 23/148 (15%)
Query: 22 KILFLGLDNSGKTTLLHMLK--DERL-------VQHQPTQYPTSEELSIGKIKFKAFDLG 72
+I +G NSGKT+L +++ ++R+ V+ + +++L I + + +
Sbjct: 5 EIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKKNKDLEIQDLP-GIYSMS 63
Query: 73 GHQMARRVWKDYY--AKVDAVVYLIDAYDKERFSESKRXXXXXXXXXXXXXVPFLILGNK 130
+ A +V +DY + D+++ ++DA + ER +P I N
Sbjct: 64 PYSPAEKVARDYLLSQRADSILNVVDATNLER-------NLYLTTQLIETGIPVTIALNM 116
Query: 131 IDIPYAASE----DELRYHMGLTNFTTG 154
ID+ + D+L YH+G+ T
Sbjct: 117 IDVLDGQGKKINVDKLSYHLGVPVVATS 144
>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 30.0 bits (66), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 34/156 (21%), Positives = 62/156 (39%), Gaps = 18/156 (11%)
Query: 22 KILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPT--------SEELSIGKIKFKAFDLGG 73
K+L +G GKT +L ++ T T + EL +IK + +D G
Sbjct: 8 KLLLIGDSGVGKTCVLFRFSEDAF---NSTFISTIGIDFKIRTIELDGKRIKLQIWDTAG 64
Query: 74 HQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRXXXXXXXXXXXXXVPFLILGNKIDI 133
+ R + YY ++ + D +++ F ++ R V +ILGNK D+
Sbjct: 65 QERFRTITTAYYRGAMGIMLVYDITNEKSF-DNIRNWIRNIEEHASADVEKMILGNKCDV 123
Query: 134 PYAASEDELRYHMGLTNF------TTGKGNVNLDNT 163
+ R ++ T+ K N+N++N
Sbjct: 124 NDKRQVSKERGEKLALDYGIKFMETSAKANINVENA 159
>pdb|1TND|A Chain A, The 2.2 Angstroms Crystal Structure Of Transducin-Alpha
Complexed With Gtp Gamma S
pdb|1TND|B Chain B, The 2.2 Angstroms Crystal Structure Of Transducin-Alpha
Complexed With Gtp Gamma S
pdb|1TND|C Chain C, The 2.2 Angstroms Crystal Structure Of Transducin-Alpha
Complexed With Gtp Gamma S
pdb|1TAD|A Chain A, Gtpase Mechanism Of Gproteins From The 1.7-Angstrom
Crystal Structure Of Transducin Alpha-Gdp-Alf4-
pdb|1TAD|B Chain B, Gtpase Mechanism Of Gproteins From The 1.7-Angstrom
Crystal Structure Of Transducin Alpha-Gdp-Alf4-
pdb|1TAD|C Chain C, Gtpase Mechanism Of Gproteins From The 1.7-Angstrom
Crystal Structure Of Transducin Alpha-Gdp-Alf4-
pdb|1TAG|A Chain A, Structural Determinants For Activation Of The
Alpha-Subunit Of A Heterotrimeric G Protein
Length = 324
Score = 30.0 bits (66), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 58 ELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYL--IDAYD 99
+ S + F+ FD+GG + R+ W + V ++++ + AYD
Sbjct: 158 QFSFKDLNFRMFDVGGQRSERKKWIHCFEGVTCIIFIAALSAYD 201
>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant
pdb|1QG4|B Chain B, Canine Gdp-Ran F72y Mutant
Length = 216
Score = 30.0 bits (66), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 28/128 (21%), Positives = 51/128 (39%), Gaps = 7/128 (5%)
Query: 11 LVSLGLWQKEAKILFLGLDNSGKTTLL-HMLKDERLVQHQPT----QYPTSEELSIGKIK 65
+ + G Q + K++ +G +GKTT + L E ++ T +P + G IK
Sbjct: 1 MAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIK 60
Query: 66 FKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRXXXXXXXXXXXXXVPFL 125
F +D G + + YY + + + D R + +P +
Sbjct: 61 FNVWDTAGQEKYGGLRDGYYIQAQCAIIMFDV--TSRVTYKNVPNWHRDLVRVCENIPIV 118
Query: 126 ILGNKIDI 133
+ GNK+DI
Sbjct: 119 LCGNKVDI 126
>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|C Chain C, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 216
Score = 30.0 bits (66), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 28/128 (21%), Positives = 51/128 (39%), Gaps = 7/128 (5%)
Query: 11 LVSLGLWQKEAKILFLGLDNSGKTTLL-HMLKDERLVQHQPT----QYPTSEELSIGKIK 65
+ + G Q + K++ +G +GKTT + L E ++ T +P + G IK
Sbjct: 1 MAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIK 60
Query: 66 FKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRXXXXXXXXXXXXXVPFL 125
F +D G + + YY + + + D R + +P +
Sbjct: 61 FNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDV--TSRVTYKNVPNWHRDLVRVCENIPIV 118
Query: 126 ILGNKIDI 133
+ GNK+DI
Sbjct: 119 LCGNKVDI 126
>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ4|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ5|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ5|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ6|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf1 Complex
pdb|3GJ7|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ7|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ8|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
pdb|3GJ8|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
Length = 221
Score = 30.0 bits (66), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 28/124 (22%), Positives = 49/124 (39%), Gaps = 7/124 (5%)
Query: 15 GLWQKEAKILFLGLDNSGKTTLL-HMLKDERLVQHQPT----QYPTSEELSIGKIKFKAF 69
G Q + K++ +G +GKTT + L E ++ T +P + G IKF +
Sbjct: 10 GEPQVQFKLVLVGDGGTGKTTFVKRHLTGESEKKYVATLGVEVHPLVFHTNRGPIKFNVW 69
Query: 70 DLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRXXXXXXXXXXXXXVPFLILGN 129
D G + + YY + + + D R + +P ++ GN
Sbjct: 70 DTAGQEKFGGLRDGYYIQAQCAIIMFDV--TSRVTYKNVPNWHRDLVRVCENIPIVLCGN 127
Query: 130 KIDI 133
K+DI
Sbjct: 128 KVDI 131
>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex
pdb|1A2K|D Chain D, Gdpran-Ntf2 Complex
pdb|1A2K|E Chain E, Gdpran-Ntf2 Complex
pdb|1IBR|A Chain A, Complex Of Ran With Importin Beta
pdb|1IBR|C Chain C, Complex Of Ran With Importin Beta
pdb|1I2M|A Chain A, Ran-Rcc1-So4 Complex
pdb|1I2M|C Chain C, Ran-Rcc1-So4 Complex
pdb|1K5D|A Chain A, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|D Chain D, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|G Chain G, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|J Chain J, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|A Chain A, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|D Chain D, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|G Chain G, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|J Chain J, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|3CH5|A Chain A, The Crystal Structure Of The Rangdp-Nup153znf2 Complex
pdb|3A6P|C Chain C, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|H Chain H, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|4GPT|A Chain A, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|A Chain A, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
pdb|4HAT|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|A Chain A, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
pdb|4HAW|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
pdb|4HAX|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
pdb|4HAY|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
pdb|4HAZ|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
pdb|4HB0|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
pdb|4HB2|A Chain A, Crystal Structure Of Crm1-ran-ranbp1
pdb|4HB3|A Chain A, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
pdb|4HB4|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 216
Score = 30.0 bits (66), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 28/128 (21%), Positives = 51/128 (39%), Gaps = 7/128 (5%)
Query: 11 LVSLGLWQKEAKILFLGLDNSGKTTLL-HMLKDERLVQHQPT----QYPTSEELSIGKIK 65
+ + G Q + K++ +G +GKTT + L E ++ T +P + G IK
Sbjct: 1 MAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIK 60
Query: 66 FKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRXXXXXXXXXXXXXVPFL 125
F +D G + + YY + + + D R + +P +
Sbjct: 61 FNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDV--TSRVTYKNVPNWHRDLVRVCENIPIV 118
Query: 126 ILGNKIDI 133
+ GNK+DI
Sbjct: 119 LCGNKVDI 126
>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex
Length = 172
Score = 29.6 bits (65), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 24/117 (20%), Positives = 47/117 (40%), Gaps = 7/117 (5%)
Query: 22 KILFLGLDNSGKTTLL--HM---LKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQM 76
K++ +G +GKTT + H+ + + + +P S + G+IKF +D G +
Sbjct: 7 KLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLEK 66
Query: 77 ARRVWKDYYAKVDAVVYLIDAYDKERFSESKRXXXXXXXXXXXXXVPFLILGNKIDI 133
+ YY + + D R + +P ++ GNK+D+
Sbjct: 67 FGGLRDGYYINAQCAIIMFDV--TSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDV 121
>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant
Length = 216
Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 28/128 (21%), Positives = 51/128 (39%), Gaps = 7/128 (5%)
Query: 11 LVSLGLWQKEAKILFLGLDNSGKTTLL-HMLKDERLVQHQPT----QYPTSEELSIGKIK 65
+ + G Q + K++ +G +GKTT + L E ++ T +P + G IK
Sbjct: 1 MAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIK 60
Query: 66 FKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRXXXXXXXXXXXXXVPFL 125
F +D G + + YY + + + D R + +P +
Sbjct: 61 FNVWDTAGQEKFGGLEDGYYIQAQCAIIMFDV--TSRVTYKNVPNWHRDLVRVCENIPIV 118
Query: 126 ILGNKIDI 133
+ GNK+DI
Sbjct: 119 LCGNKVDI 126
>pdb|3ICQ|B Chain B, Karyopherin Nuclear State
pdb|3ICQ|C Chain C, Karyopherin Nuclear State
Length = 171
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/117 (20%), Positives = 47/117 (40%), Gaps = 7/117 (5%)
Query: 22 KILFLGLDNSGKTTLL--HM---LKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQM 76
K++ +G +GKTT + H+ + + + +P S + G+IKF +D G +
Sbjct: 6 KLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLEK 65
Query: 77 ARRVWKDYYAKVDAVVYLIDAYDKERFSESKRXXXXXXXXXXXXXVPFLILGNKIDI 133
+ YY + + D R + +P ++ GNK+D+
Sbjct: 66 FGGLRDGYYINAQCAIIMFDV--TSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDV 120
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 40/88 (45%), Gaps = 5/88 (5%)
Query: 22 KILFLGLDNSGKTTLLHMLKDERL---VQHQPTQYPTSEELSIGK--IKFKAFDLGGHQM 76
K L +G +GK+ LLH +++ H S+ +++G +K + +D G +
Sbjct: 13 KFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQER 72
Query: 77 ARRVWKDYYAKVDAVVYLIDAYDKERFS 104
R V + YY + + D +E ++
Sbjct: 73 FRSVTRSYYRGAAGALLVYDITSRETYN 100
>pdb|1GIL|A Chain A, Structure Of Active Conformations Of Gia1 And The
Mechanism Of Gtp Hydrolysis
Length = 353
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 15/66 (22%)
Query: 49 QPTQYPTSEELSIGKIK---------------FKAFDLGGHQMARRVWKDYYAKVDAVVY 93
QP PT +++ ++K FK FD+GG + R+ W + V A+++
Sbjct: 163 QPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGLRSERKKWIHCFEGVTAIIF 222
Query: 94 LIDAYD 99
+ D
Sbjct: 223 CVALSD 228
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 40/88 (45%), Gaps = 5/88 (5%)
Query: 22 KILFLGLDNSGKTTLLHMLKDERL---VQHQPTQYPTSEELSIGK--IKFKAFDLGGHQM 76
K L +G +GK+ LLH +++ H S+ +++G +K + +D G +
Sbjct: 12 KFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQER 71
Query: 77 ARRVWKDYYAKVDAVVYLIDAYDKERFS 104
R V + YY + + D +E ++
Sbjct: 72 FRSVTRSYYRGAAGALLVYDITSRETYN 99
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/95 (22%), Positives = 42/95 (44%), Gaps = 11/95 (11%)
Query: 22 KILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPT--------SEELSIGKIKFKAFDLGG 73
KIL +G GK+ LL +++ P+ T + +++ K+K + +D G
Sbjct: 5 KILLIGDSGVGKSCLLVRFVEDKF---NPSFITTIGIDFKIKTVDINGKKVKLQLWDTAG 61
Query: 74 HQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKR 108
+ R + YY ++ + D D+ F+ K+
Sbjct: 62 QERFRTITTAYYRGAXGIILVYDVTDERTFTNIKQ 96
>pdb|2IHB|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs10 And Activated Gi Alpha 3
Length = 323
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 66 FKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYD 99
FK FD+GG + R+ W + V A+++ + D
Sbjct: 165 FKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSD 198
Score = 26.6 bits (57), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 19 KEAKILFLGLDNSGKTTLLHMLK 41
KE K+L LG SGK+T++ +K
Sbjct: 1 KEVKLLLLGAGESGKSTIVKQMK 23
>pdb|4G5O|A Chain A, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
pdb|4G5O|B Chain B, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
pdb|4G5O|C Chain C, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
pdb|4G5O|D Chain D, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
Length = 330
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 66 FKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYD 99
FK FD+GG + R+ W + V A+++ + D
Sbjct: 172 FKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSD 205
Score = 26.6 bits (57), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 19 KEAKILFLGLDNSGKTTLLHMLK 41
KE K+L LG SGK+T++ +K
Sbjct: 8 KEVKLLLLGAGESGKSTIVKQMK 30
>pdb|4G5R|A Chain A, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5R|B Chain B, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5R|C Chain C, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5R|D Chain D, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5S|A Chain A, Structure Of Lgn Gl3GALPHAI3 COMPLEX
pdb|4G5S|B Chain B, Structure Of Lgn Gl3GALPHAI3 COMPLEX
pdb|4G5S|C Chain C, Structure Of Lgn Gl3GALPHAI3 COMPLEX
pdb|4G5S|D Chain D, Structure Of Lgn Gl3GALPHAI3 COMPLEX
Length = 330
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 66 FKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYD 99
FK FD+GG + R+ W + V A+++ + D
Sbjct: 172 FKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSD 205
Score = 26.6 bits (57), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 19 KEAKILFLGLDNSGKTTLLHMLK 41
KE K+L LG SGK+T++ +K
Sbjct: 8 KEVKLLLLGAGESGKSTIVKQMK 30
>pdb|2ODE|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs8 And Activated Gi Alpha 3
pdb|2ODE|C Chain C, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs8 And Activated Gi Alpha 3
pdb|2V4Z|A Chain A, The Crystal Structure Of The Human G-Protein Subunit Alpha
( Gnai3) In Complex With An Engineered Regulator Of G-
Protein Signaling Type 2 Domain (Rgs2)
Length = 350
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 66 FKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYD 99
FK FD+GG + R+ W + V A+++ + D
Sbjct: 195 FKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSD 228
Score = 26.6 bits (57), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 19 KEAKILFLGLDNSGKTTLLHMLK 41
KE K+L LG SGK+T++ +K
Sbjct: 31 KEVKLLLLGAGESGKSTIVKQMK 53
>pdb|3CNL|A Chain A, Crystal Structure Of Gnp-Bound Ylqf From T. Maritima
pdb|3CNN|A Chain A, Gtp-Bound Structure Of Tm Ylqf
pdb|3CNO|A Chain A, Gdp-Bound Structue Of Tm Ylqf
Length = 262
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 23/32 (71%), Gaps = 2/32 (6%)
Query: 21 AKILFLGLDNSGKTTLLHMLKDERL--VQHQP 50
A++L +G+ N+GK+T+++ LK +R V QP
Sbjct: 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQP 131
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/95 (22%), Positives = 42/95 (44%), Gaps = 11/95 (11%)
Query: 22 KILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPT--------SEELSIGKIKFKAFDLGG 73
KIL +G GK+ LL +++ P+ T + +++ K+K + +D G
Sbjct: 5 KILLIGDSGVGKSCLLVRFVEDKF---NPSFITTIGIDFKIKTVDINGKKVKLQIWDTAG 61
Query: 74 HQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKR 108
+ R + YY ++ + D D+ F+ K+
Sbjct: 62 QERFRTITTAYYRGAXGIILVYDITDERTFTNIKQ 96
>pdb|3C7K|A Chain A, Molecular Architecture Of Galphao And The Structural Basis
For Rgs16-Mediated Deactivation
pdb|3C7K|C Chain C, Molecular Architecture Of Galphao And The Structural Basis
For Rgs16-Mediated Deactivation
Length = 333
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 9/32 (28%), Positives = 19/32 (59%)
Query: 64 IKFKAFDLGGHQMARRVWKDYYAKVDAVVYLI 95
+ F+ FD+GG + R+ W + V A+++ +
Sbjct: 174 LHFRLFDVGGQRSERKKWIHCFEDVTAIIFCV 205
>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex
pdb|1RRP|C Chain C, Structure Of The Ran-Gppnhp-Ranbd1 Complex
Length = 204
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/121 (22%), Positives = 48/121 (39%), Gaps = 7/121 (5%)
Query: 18 QKEAKILFLGLDNSGKTTLL-HMLKDERLVQHQPT----QYPTSEELSIGKIKFKAFDLG 72
Q + K++ +G +GKTT + L E ++ T +P + G IKF +D
Sbjct: 1 QVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTA 60
Query: 73 GHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRXXXXXXXXXXXXXVPFLILGNKID 132
G + + YY + + + D R + +P ++ GNK+D
Sbjct: 61 GQEKFGGLRDGYYIQAQCAIIMFDV--TSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVD 118
Query: 133 I 133
I
Sbjct: 119 I 119
>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp
pdb|3GJ0|B Chain B, Crystal Structure Of Human Rangdp
pdb|3GJ3|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf2 Complex
Length = 221
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/124 (22%), Positives = 49/124 (39%), Gaps = 7/124 (5%)
Query: 15 GLWQKEAKILFLGLDNSGKTTLL-HMLKDERLVQHQPT----QYPTSEELSIGKIKFKAF 69
G Q + K++ +G +GKTT + L E ++ T +P + G IKF +
Sbjct: 10 GEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVW 69
Query: 70 DLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRXXXXXXXXXXXXXVPFLILGN 129
D G + + YY + + + D R + +P ++ GN
Sbjct: 70 DTAGQEKFGGLRDGYYIQAQCAIIMFDV--TSRVTYKNVPNWHRDLVRVCENIPIVLCGN 127
Query: 130 KIDI 133
K+DI
Sbjct: 128 KVDI 131
>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal
Structure Of The Small G Protein Rab3a Complexed With
The Effector Domain Of Rabphilin-3a
Length = 203
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 35/163 (21%), Positives = 65/163 (39%), Gaps = 13/163 (7%)
Query: 22 KILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSI-----GKIKFKAFDLGGHQM 76
KIL +G + GKT+ L D+ + ++ +IK + +D G +
Sbjct: 10 KILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLER 69
Query: 77 ARRVWKDYYAKVDAVVYLIDAYDKERFSESKRXXXXXXXXXXXXXVPFLILGNKID---- 132
R + YY + D ++E F+ + + L++GNK D
Sbjct: 70 YRTITTAYYRGAXGFILXYDITNEESFN-AVQDWSTQIKTYSWDNAQVLLVGNKCDXEDE 128
Query: 133 -IPYAASEDELRYHMGLTNF-TTGKGNVNLDNTNVRPLEVFMC 173
+ + +L H+G F + K N+N+ T R ++V +C
Sbjct: 129 RVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDV-IC 170
>pdb|3UMS|A Chain A, Crystal Structure Of The G202a Mutant Of Human G-Alpha-I1
Length = 354
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/66 (22%), Positives = 28/66 (42%), Gaps = 15/66 (22%)
Query: 49 QPTQYPTSEELSIGKIK---------------FKAFDLGGHQMARRVWKDYYAKVDAVVY 93
QP PT +++ ++K FK FD+ G + R+ W + V A+++
Sbjct: 164 QPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVAGQRSERKKWIHCFEGVTAIIF 223
Query: 94 LIDAYD 99
+ D
Sbjct: 224 CVALSD 229
>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|F Chain F, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NBZ|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NC0|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC0|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
Length = 176
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 28/124 (22%), Positives = 49/124 (39%), Gaps = 7/124 (5%)
Query: 15 GLWQKEAKILFLGLDNSGKTTLL-HMLKDERLVQHQPT----QYPTSEELSIGKIKFKAF 69
G Q + K++ +G +GKTT + L E ++ T +P + G IKF +
Sbjct: 1 GEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVW 60
Query: 70 DLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRXXXXXXXXXXXXXVPFLILGN 129
D G + + YY + + + D R + +P ++ GN
Sbjct: 61 DTAGLEKFGGLRDGYYIQAQCAIIMFDV--TSRVTYKNVPNWHRDLVRVCENIPIVLCGN 118
Query: 130 KIDI 133
K+DI
Sbjct: 119 KVDI 122
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/95 (22%), Positives = 42/95 (44%), Gaps = 11/95 (11%)
Query: 22 KILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPT--------SEELSIGKIKFKAFDLGG 73
KIL +G GK+ LL +++ P+ T + +++ K+K + +D G
Sbjct: 9 KILLIGDSGVGKSCLLVRFVEDKF---NPSFITTIGIDFKIKTVDINGKKVKLQLWDTAG 65
Query: 74 HQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKR 108
+ R + YY ++ + D D+ F+ K+
Sbjct: 66 QERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQ 100
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 53/120 (44%), Gaps = 8/120 (6%)
Query: 22 KILFLGLDNSGKTTLLHMLKDERLV-QHQPT---QYPTSEELSIGK-IKFKAFDLGGHQM 76
K++ LG GKT+L++ +++ Q++ T + T E + + + + +D G +
Sbjct: 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQER 69
Query: 77 ARRVWKDYYAKVDAVVYLIDAYDKERFS--ESKRXX-XXXXXXXXXXXVPFLILGNKIDI 133
+ + +Y D V + D F +S R PF++LGNKID+
Sbjct: 70 FQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDL 129
>pdb|1GG2|A Chain A, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GIT|A Chain A, Structure Of Gtp-Binding Protein
Length = 353
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/66 (22%), Positives = 28/66 (42%), Gaps = 15/66 (22%)
Query: 49 QPTQYPTSEELSIGKIK---------------FKAFDLGGHQMARRVWKDYYAKVDAVVY 93
QP PT +++ ++K FK FD+G + R+ W + V A+++
Sbjct: 163 QPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGAQRSERKKWIHCFEGVTAIIF 222
Query: 94 LIDAYD 99
+ D
Sbjct: 223 CVALSD 228
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/120 (21%), Positives = 50/120 (41%), Gaps = 12/120 (10%)
Query: 22 KILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPT--------SEELSIGKIKFKAFDLGG 73
KIL +G GK+ LL +++ P+ T + +++ K+K + +D G
Sbjct: 22 KILLIGDSGVGKSCLLVRFVEDKF---NPSFITTIGIDFKIKTVDINGKKVKLQLWDTAG 78
Query: 74 HQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRXXXXXXXXXXXXXVPFLILGNKIDI 133
+ R + YY ++ + D D+ F+ K+ L++GNK D+
Sbjct: 79 QERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQ-WFKTVNEHANDEAQLLLVGNKSDM 137
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 53/120 (44%), Gaps = 8/120 (6%)
Query: 22 KILFLGLDNSGKTTLLHMLKDERLV-QHQPT---QYPTSEELSIGK-IKFKAFDLGGHQM 76
K++ LG GKT+L++ +++ Q++ T + T E + + + + +D G +
Sbjct: 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQER 69
Query: 77 ARRVWKDYYAKVDAVVYLIDAYDKERFS--ESKRXX-XXXXXXXXXXXVPFLILGNKIDI 133
+ + +Y D V + D F +S R PF++LGNKID+
Sbjct: 70 FQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDL 129
>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|C Chain C, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|D Chain D, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|B Chain B, Canine Gdp-Ran Q69l Mutant
pdb|3GJX|C Chain C, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|F Chain F, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
Length = 216
Score = 28.5 bits (62), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 28/128 (21%), Positives = 51/128 (39%), Gaps = 7/128 (5%)
Query: 11 LVSLGLWQKEAKILFLGLDNSGKTTLL-HMLKDERLVQHQPT----QYPTSEELSIGKIK 65
+ + G Q + K++ +G +GKTT + L E ++ T +P + G IK
Sbjct: 1 MAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIK 60
Query: 66 FKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRXXXXXXXXXXXXXVPFL 125
F +D G + + YY + + + D R + +P +
Sbjct: 61 FNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDV--TSRVTYKNVPNWHRDLVRVCENIPIV 118
Query: 126 ILGNKIDI 133
+ GNK+DI
Sbjct: 119 LCGNKVDI 126
>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 216
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 28/128 (21%), Positives = 50/128 (39%), Gaps = 7/128 (5%)
Query: 11 LVSLGLWQKEAKILFLGLDNSGKTTLL-HMLKDERLVQHQPT----QYPTSEELSIGKIK 65
+ + G Q + K++ +G +GKTT + L E ++ T +P + G IK
Sbjct: 1 MAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIK 60
Query: 66 FKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRXXXXXXXXXXXXXVPFL 125
F +D G + + YY + + D R + +P +
Sbjct: 61 FNVWDTAGQEKFGGLRDGYYIQAQCAIIXFDV--TSRVTYKNVPNWHRDLVRVCENIPIV 118
Query: 126 ILGNKIDI 133
+ GNK+DI
Sbjct: 119 LCGNKVDI 126
>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 219
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/117 (20%), Positives = 47/117 (40%), Gaps = 7/117 (5%)
Query: 22 KILFLGLDNSGKTTLL--HM---LKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQM 76
K++ +G +GKTT + H+ + + + +P S + G+IKF +D G +
Sbjct: 14 KLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLEK 73
Query: 77 ARRVWKDYYAKVDAVVYLIDAYDKERFSESKRXXXXXXXXXXXXXVPFLILGNKIDI 133
+ YY + + D R + +P ++ GNK+D+
Sbjct: 74 FGGLRDGYYINAQCAIIMFDV--TSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDV 128
>pdb|1WF3|A Chain A, Crystal Structure Of Gtp-Binding Protein Tt1341 From
Thermus Thermophilus Hb8
Length = 301
Score = 28.5 bits (62), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 54/136 (39%), Gaps = 17/136 (12%)
Query: 23 ILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEEL----SIGKIKF---------KAF 69
+ +G N GK+TLL+ L ++ P T + L + G+ + K
Sbjct: 10 VAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPM 69
Query: 70 DLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRXXXXXXXXXXXXXVPFLILGN 129
D G M + V+ + A V+AVV+++D + VP L++GN
Sbjct: 70 DALGEFMDQEVY-EALADVNAVVWVVDLRHPPTPEDE---LVARALKPLVGKVPILLVGN 125
Query: 130 KIDIPYAASEDELRYH 145
K+D E YH
Sbjct: 126 KLDAAKYPEEAMKAYH 141
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 28.5 bits (62), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 26/120 (21%), Positives = 50/120 (41%), Gaps = 12/120 (10%)
Query: 22 KILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPT--------SEELSIGKIKFKAFDLGG 73
KIL +G GK+ LL +++ P+ T + +++ K+K + +D G
Sbjct: 5 KILLIGDSGVGKSCLLVRFVEDKF---NPSFITTIGIDFKIKTVDINGKKVKLQIWDTAG 61
Query: 74 HQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRXXXXXXXXXXXXXVPFLILGNKIDI 133
+ R + YY ++ + D D+ F+ K+ L++GNK D+
Sbjct: 62 QERFRTITTAYYRGAMGIILVYDITDERTFTNIKQ-WFKTVNEHANDEAQLLLVGNKSDM 120
>pdb|3B1Z|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob T35s Mutant
Without Nucleotide
Length = 272
Score = 28.1 bits (61), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 31/149 (20%), Positives = 64/149 (42%), Gaps = 23/149 (15%)
Query: 21 AKILFLGLDNSGKTTLLHMLK--DERL-------VQHQPTQYPTSEELSIGKIKFKAFDL 71
+I +G NSGKT+L +++ ++R+ V+ + +++L I + + +
Sbjct: 4 TEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVSVERKSGLVKKNKDLEIQDLP-GIYSM 62
Query: 72 GGHQMARRVWKDYY--AKVDAVVYLIDAYDKERFSESKRXXXXXXXXXXXXXVPFLILGN 129
+ +V +DY + D+++ ++DA + ER +P I N
Sbjct: 63 SPYSPEEKVARDYLLSQRADSILNVVDATNLER-------NLYLTTQLIETGIPVTIALN 115
Query: 130 KIDIPYAASE----DELRYHMGLTNFTTG 154
ID+ + D+L YH+G+ T
Sbjct: 116 MIDVLDGQGKKINVDKLSYHLGVPVVATS 144
>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
Length = 179
Score = 28.1 bits (61), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 51/125 (40%), Gaps = 22/125 (17%)
Query: 22 KILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGK-------------IKFKA 68
K++ LG GK++L+ R V+ Q +Y +E +IG +KF+
Sbjct: 10 KLVLLGESAVGKSSLVL-----RFVKGQFHEY---QESTIGAAFLTQSVCLDDTTVKFEI 61
Query: 69 FDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRXXXXXXXXXXXXXVPFLILG 128
+D G + + YY A + + D ++E F+ +K V + G
Sbjct: 62 WDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIV-IALAG 120
Query: 129 NKIDI 133
NK D+
Sbjct: 121 NKADL 125
>pdb|3B1Y|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob T35a Mutant
Bound To Gdp
Length = 272
Score = 28.1 bits (61), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 31/148 (20%), Positives = 64/148 (43%), Gaps = 23/148 (15%)
Query: 22 KILFLGLDNSGKTTLLHMLK--DERL-------VQHQPTQYPTSEELSIGKIKFKAFDLG 72
+I +G NSGKT+L +++ ++R+ V+ + +++L I + + +
Sbjct: 5 EIALIGNPNSGKTSLFNLITGHNQRVGNWPGVAVERKSGLVKKNKDLEIQDLP-GIYSMS 63
Query: 73 GHQMARRVWKDYY--AKVDAVVYLIDAYDKERFSESKRXXXXXXXXXXXXXVPFLILGNK 130
+ +V +DY + D+++ ++DA + ER +P I N
Sbjct: 64 PYSPEEKVARDYLLSQRADSILNVVDATNLER-------NLYLTTQLIETGIPVTIALNM 116
Query: 131 IDIPYAASE----DELRYHMGLTNFTTG 154
ID+ + D+L YH+G+ T
Sbjct: 117 IDVLDGQGKKINVDKLSYHLGVPVVATS 144
>pdb|3LX5|A Chain A, Crystal Structure Of Mgmppnp-Bound Nfeob From S.
Thermophilus
pdb|3LX8|A Chain A, Crystal Structure Of Gdp-Bound Nfeob From S. Thermophilus
pdb|3SS8|A Chain A, Crystal Structure Of Nfeob From S. Thermophilus Bound To
Gdp.Alf4- And K+
pdb|3SS8|B Chain B, Crystal Structure Of Nfeob From S. Thermophilus Bound To
Gdp.Alf4- And K+
Length = 272
Score = 28.1 bits (61), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 31/149 (20%), Positives = 64/149 (42%), Gaps = 23/149 (15%)
Query: 21 AKILFLGLDNSGKTTLLHMLK--DERL-------VQHQPTQYPTSEELSIGKIKFKAFDL 71
+I +G NSGKT+L +++ ++R+ V+ + +++L I + + +
Sbjct: 4 TEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKKNKDLEIQDLP-GIYSM 62
Query: 72 GGHQMARRVWKDYY--AKVDAVVYLIDAYDKERFSESKRXXXXXXXXXXXXXVPFLILGN 129
+ +V +DY + D+++ ++DA + ER +P I N
Sbjct: 63 SPYSPEEKVARDYLLSQRADSILNVVDATNLER-------NLYLTTQLIETGIPVTIALN 115
Query: 130 KIDIPYAASE----DELRYHMGLTNFTTG 154
ID+ + D+L YH+G+ T
Sbjct: 116 MIDVLDGQGKKINVDKLSYHLGVPVVATS 144
>pdb|3UMR|A Chain A, Crystal Structure Of The G202d Mutant Of Human G-Alpha-I1
Length = 354
Score = 28.1 bits (61), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/62 (22%), Positives = 27/62 (43%), Gaps = 15/62 (24%)
Query: 49 QPTQYPTSEELSIGKIK---------------FKAFDLGGHQMARRVWKDYYAKVDAVVY 93
QP PT +++ ++K FK FD+ G + R+ W + V A+++
Sbjct: 164 QPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVDGQRSERKKWIHCFEGVTAIIF 223
Query: 94 LI 95
+
Sbjct: 224 CV 225
>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 52/119 (43%), Gaps = 8/119 (6%)
Query: 22 KILFLGLDNSGKTTLLHMLKDERLV-QHQPT---QYPTSEELSIGK-IKFKAFDLGGHQM 76
K++ LG GKT+L++ +++ Q++ T + T E + + + + +D G +
Sbjct: 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQER 69
Query: 77 ARRVWKDYYAKVDAVVYLIDAYDKERFS--ESKRXX-XXXXXXXXXXXVPFLILGNKID 132
+ + +Y D V + D F +S R PF++LGNKID
Sbjct: 70 FQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKID 128
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 28.1 bits (61), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 40/88 (45%), Gaps = 5/88 (5%)
Query: 22 KILFLGLDNSGKTTLLHMLKDERL---VQHQPTQYPTSEELSIGK--IKFKAFDLGGHQM 76
K L +G +GK+ LLH +++ H S+ +++G +K + +D G +
Sbjct: 10 KFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGLER 69
Query: 77 ARRVWKDYYAKVDAVVYLIDAYDKERFS 104
R V + YY + + D +E ++
Sbjct: 70 FRSVTRSYYRGAAGALLVYDITSRETYN 97
>pdb|2BCJ|Q Chain Q, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
pdb|2RGN|A Chain A, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|D Chain D, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 353
Score = 27.7 bits (60), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 11/44 (25%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Query: 52 QYPTSEELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLI 95
+YP + + F+ D+GG + RR W + V ++++L+
Sbjct: 185 EYP----FDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLV 224
>pdb|3AH8|A Chain A, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
Length = 355
Score = 27.7 bits (60), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 11/44 (25%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Query: 52 QYPTSEELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLI 95
+YP + + F+ D+GG + RR W + V ++++L+
Sbjct: 187 EYP----FDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLV 226
>pdb|4GNK|A Chain A, Crystal Structure Of Galphaq In Complex With Full-length
Human Plcbeta3
pdb|4GNK|C Chain C, Crystal Structure Of Galphaq In Complex With Full-length
Human Plcbeta3
Length = 353
Score = 27.7 bits (60), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 11/44 (25%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Query: 52 QYPTSEELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLI 95
+YP + + F+ D+GG + RR W + V ++++L+
Sbjct: 185 EYP----FDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLV 224
>pdb|3B1V|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Mgmppnp
pdb|3B1W|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Gdp
pdb|3B1W|B Chain B, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Gdp
pdb|3B1W|C Chain C, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Gdp
pdb|3B1W|D Chain D, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Gdp
Length = 272
Score = 27.7 bits (60), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 31/148 (20%), Positives = 64/148 (43%), Gaps = 23/148 (15%)
Query: 22 KILFLGLDNSGKTTLLHMLK--DERL-------VQHQPTQYPTSEELSIGKIKFKAFDLG 72
+I +G NSGKT+L +++ ++R+ V+ + +++L I + + +
Sbjct: 5 EIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKKNKDLEIQDLP-GIYSMS 63
Query: 73 GHQMARRVWKDYY--AKVDAVVYLIDAYDKERFSESKRXXXXXXXXXXXXXVPFLILGNK 130
+ +V +DY + D+++ ++DA + ER +P I N
Sbjct: 64 PYSPEAKVARDYLLSQRADSILNVVDATNLER-------NLYLTTQLIETGIPVTIALNM 116
Query: 131 IDIPYAASE----DELRYHMGLTNFTTG 154
ID+ + D+L YH+G+ T
Sbjct: 117 IDVLDGQGKKINVDKLSYHLGVPVVATS 144
>pdb|4EKC|A Chain A, Structure Of Human Regulator Of G Protein Signaling 2
(rgs2) In Complex With Murine Galpha-q(r183c)
pdb|4EKC|C Chain C, Structure Of Human Regulator Of G Protein Signaling 2
(rgs2) In Complex With Murine Galpha-q(r183c)
pdb|4EKD|A Chain A, Structure Of Human Regulator Of G Protein Signaling 2
(rgs2) In Complex With Murine Galpha-q(r183c)
Length = 347
Score = 27.7 bits (60), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 11/44 (25%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Query: 52 QYPTSEELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLI 95
+YP + + F+ D+GG + RR W + V ++++L+
Sbjct: 179 EYP----FDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLV 218
>pdb|3OHM|A Chain A, Crystal Structure Of Activated G Alpha Q Bound To Its
Effector Phospholipase C Beta 3
Length = 327
Score = 27.7 bits (60), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 11/44 (25%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Query: 52 QYPTSEELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLI 95
+YP + + F+ D+GG + RR W + V ++++L+
Sbjct: 159 EYP----FDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLV 198
>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|B Chain B, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|C Chain C, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|D Chain D, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1YHN|A Chain A, Structure Basis Of Rilp Recruitment By Rab7
Length = 207
Score = 26.9 bits (58), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 53/120 (44%), Gaps = 8/120 (6%)
Query: 22 KILFLGLDNSGKTTLLHMLKDERLV-QHQPT---QYPTSEELSIGK-IKFKAFDLGGHQM 76
K++ LG GKT+L++ +++ Q++ T + T E + + + + +D G +
Sbjct: 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGLER 69
Query: 77 ARRVWKDYYAKVDAVVYLIDAYDKERFS--ESKRXX-XXXXXXXXXXXVPFLILGNKIDI 133
+ + +Y D V + D F +S R PF++LGNKID+
Sbjct: 70 FQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDL 129
>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|B Chain B, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|C Chain C, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|D Chain D, Crystal Structure Of Rab5-Gdp Complex
Length = 171
Score = 26.9 bits (58), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 44/99 (44%), Gaps = 21/99 (21%)
Query: 22 KILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGK-------------IKFKA 68
K++ LG GK++L+ R V+ Q ++ +E +IG +KF+
Sbjct: 9 KLVLLGESAVGKSSLVL-----RFVKGQFHEF---QESTIGAAFLTQTVCLDDTTVKFEI 60
Query: 69 FDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESK 107
+D G + + YY A + + D ++E F+ +K
Sbjct: 61 WDTAGQERYHSLAPXYYRGAQAAIVVYDITNEESFARAK 99
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 26.9 bits (58), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 24/130 (18%), Positives = 47/130 (36%), Gaps = 19/130 (14%)
Query: 22 KILFLGLDNSGKTTLLHM-----------------LKDERLVQHQPTQYPTSEELSIGKI 64
K+L LG GKTT L+ +++R+V + Q P K+
Sbjct: 27 KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYN--AQGPNGSSGKAFKV 84
Query: 65 KFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRXXXXXXXXXXXXXVPF 124
+ +D G + R + ++ + + D ++ F +
Sbjct: 85 HLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDI 144
Query: 125 LILGNKIDIP 134
+++GNK D+P
Sbjct: 145 VLIGNKADLP 154
>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q72|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7Q|A Chain A, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
pdb|3Q7Q|B Chain B, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
Length = 166
Score = 26.9 bits (58), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 25/115 (21%), Positives = 43/115 (37%), Gaps = 3/115 (2%)
Query: 22 KILFLGLDNSGKTTLLHM---LKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMAR 78
K+L LG GK+ L + ++D + Y S + + +D+ R
Sbjct: 4 KVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGR 63
Query: 79 RVWKDYYAKVDAVVYLIDAYDKERFSESKRXXXXXXXXXXXXXVPFLILGNKIDI 133
+ A DA V + DK F ++ VP +++GNK D+
Sbjct: 64 WLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDL 118
>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With
Gppnhp
Length = 170
Score = 26.9 bits (58), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 44/99 (44%), Gaps = 21/99 (21%)
Query: 22 KILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGK-------------IKFKA 68
K++ LG GK++L+ R V+ Q ++ +E +IG +KF+
Sbjct: 8 KLVLLGESEVGKSSLVL-----RFVKGQFHEF---QESTIGAAFLTQTVCLDDTTVKFEI 59
Query: 69 FDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESK 107
+D G + + YY A + + D ++E F+ +K
Sbjct: 60 WDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAK 98
>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
Length = 199
Score = 26.6 bits (57), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 64/151 (42%), Gaps = 9/151 (5%)
Query: 22 KILFLGLDNSGKTTLL-HMLKDERLVQHQPT---QYPTSEELSIGK-IKFKAFDLGGHQM 76
K++ +G GK+ LL ++E ++ + T ++ T GK IK + +D G +
Sbjct: 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQER 66
Query: 77 ARRVWKDYYAKVDAVVYLIDAYDKERFSESKRXXXXXXXXXXXXXVPFLILGNKIDIPY- 135
RR+ YY + + D + +R V +++GNK D+ +
Sbjct: 67 YRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIV-IMLVGNKSDLRHL 125
Query: 136 -AASEDELRYHMGLTNFTTGKGNVNLDNTNV 165
A DE R N + + + LD+TNV
Sbjct: 126 RAVPTDEARAFAEKNNLSFIETSA-LDSTNV 155
>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With
Gppnhp
Length = 170
Score = 26.6 bits (57), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 44/99 (44%), Gaps = 21/99 (21%)
Query: 22 KILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGK-------------IKFKA 68
K++ LG GK++L+ R V+ Q ++ +E +IG +KF+
Sbjct: 8 KLVLLGESRVGKSSLVL-----RFVKGQFHEF---QESTIGAAFLTQTVCLDDTTVKFEI 59
Query: 69 FDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESK 107
+D G + + YY A + + D ++E F+ +K
Sbjct: 60 WDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAK 98
>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With
Gppnhp
Length = 170
Score = 26.6 bits (57), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 44/99 (44%), Gaps = 21/99 (21%)
Query: 22 KILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGK-------------IKFKA 68
K++ LG GK++L+ R V+ Q ++ +E +IG +KF+
Sbjct: 8 KLVLLGESKVGKSSLVL-----RFVKGQFHEF---QESTIGAAFLTQTVCLDDTTVKFEI 59
Query: 69 FDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESK 107
+D G + + YY A + + D ++E F+ +K
Sbjct: 60 WDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAK 98
>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase
pdb|2DPX|B Chain B, Crystal Structure Of Human Rad Gtpase
Length = 174
Score = 26.6 bits (57), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 25/115 (21%), Positives = 43/115 (37%), Gaps = 3/115 (2%)
Query: 22 KILFLGLDNSGKTTLLHM---LKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMAR 78
K+L LG GK+ L + ++D + Y S + + +D+ R
Sbjct: 9 KVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGR 68
Query: 79 RVWKDYYAKVDAVVYLIDAYDKERFSESKRXXXXXXXXXXXXXVPFLILGNKIDI 133
+ A DA V + DK F ++ VP +++GNK D+
Sbjct: 69 WLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDL 123
>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex
Length = 178
Score = 26.6 bits (57), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 23/117 (19%), Positives = 49/117 (41%), Gaps = 5/117 (4%)
Query: 22 KILFLGLDNSGKTTL-LHMLKDERLVQHQPTQ---YPTSEELSIGKIKFKAFDLGGHQMA 77
K++ +G GK+ L L + DE + ++PT+ Y L +++ D G +
Sbjct: 9 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGLEDY 68
Query: 78 RRVWKDYYAKVDAVVYLIDAYDKERFSESKR-XXXXXXXXXXXXXVPFLILGNKIDI 133
+ +Y+ + + + + E F+ + +P L++GNK D+
Sbjct: 69 AAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDL 125
>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb
In Its Active Conformation: Significance For Effector
Protein Binding
Length = 174
Score = 26.6 bits (57), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 23/117 (19%), Positives = 49/117 (41%), Gaps = 5/117 (4%)
Query: 22 KILFLGLDNSGKTTL-LHMLKDERLVQHQPTQ---YPTSEELSIGKIKFKAFDLGGHQMA 77
K++ +G GK+ L L + DE + ++PT+ Y L +++ D G +
Sbjct: 5 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGLEDY 64
Query: 78 RRVWKDYYAKVDAVVYLIDAYDKERFSESKR-XXXXXXXXXXXXXVPFLILGNKIDI 133
+ +Y+ + + + + E F+ + +P L++GNK D+
Sbjct: 65 AAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDL 121
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.140 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,737,239
Number of Sequences: 62578
Number of extensions: 219312
Number of successful extensions: 828
Number of sequences better than 100.0: 212
Number of HSP's better than 100.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 75
Number of HSP's that attempted gapping in prelim test: 594
Number of HSP's gapped (non-prelim): 252
length of query: 193
length of database: 14,973,337
effective HSP length: 93
effective length of query: 100
effective length of database: 9,153,583
effective search space: 915358300
effective search space used: 915358300
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)