Query 029453
Match_columns 193
No_of_seqs 123 out of 1785
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 13:10:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029453.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029453hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00879 Sar1 Sar1 subfamily. 100.0 6.3E-34 1.4E-38 202.6 23.8 190 2-192 1-190 (190)
2 smart00178 SAR Sar1p-like memb 100.0 5.2E-34 1.1E-38 201.9 22.5 183 5-192 2-184 (184)
3 PLN00223 ADP-ribosylation fact 100.0 2.4E-33 5.2E-38 197.9 21.3 165 16-192 13-177 (181)
4 PF00025 Arf: ADP-ribosylation 100.0 1.8E-33 3.9E-38 197.4 18.6 175 7-192 1-175 (175)
5 cd04149 Arf6 Arf6 subfamily. 100.0 1.2E-32 2.6E-37 192.3 19.9 162 17-190 6-167 (168)
6 PTZ00133 ADP-ribosylation fact 100.0 3.5E-32 7.6E-37 192.2 21.7 164 17-192 14-177 (182)
7 smart00177 ARF ARF-like small 100.0 2.3E-32 5E-37 192.0 20.1 163 18-192 11-173 (175)
8 cd04150 Arf1_5_like Arf1-Arf5- 100.0 4.4E-32 9.5E-37 187.8 20.1 158 21-190 1-158 (159)
9 cd04154 Arl2 Arl2 subfamily. 100.0 5.6E-32 1.2E-36 189.8 20.0 167 12-190 6-172 (173)
10 cd04153 Arl5_Arl8 Arl5/Arl8 su 100.0 3E-31 6.5E-36 186.3 21.0 162 18-191 13-174 (174)
11 cd04158 ARD1 ARD1 subfamily. 100.0 1.6E-31 3.4E-36 186.8 19.2 160 22-192 1-160 (169)
12 cd04161 Arl2l1_Arl13_like Arl2 100.0 3.8E-31 8.2E-36 184.5 20.4 161 22-191 1-167 (167)
13 cd04151 Arl1 Arl1 subfamily. 100.0 1.5E-30 3.2E-35 180.0 19.8 157 22-190 1-157 (158)
14 KOG0077 Vesicle coat complex C 100.0 1.8E-31 3.9E-36 177.1 13.9 193 1-193 1-193 (193)
15 cd04152 Arl4_Arl7 Arl4/Arl7 su 100.0 3.2E-30 7E-35 182.4 20.3 163 19-192 2-169 (183)
16 KOG0073 GTP-binding ADP-ribosy 100.0 1.9E-30 4.1E-35 171.9 17.3 173 9-192 5-177 (185)
17 cd04156 ARLTS1 ARLTS1 subfamil 100.0 3.5E-30 7.6E-35 178.4 19.3 158 22-190 1-159 (160)
18 cd04157 Arl6 Arl6 subfamily. 100.0 5.6E-30 1.2E-34 177.6 19.7 158 22-191 1-162 (162)
19 cd04160 Arfrp1 Arfrp1 subfamil 100.0 7.5E-30 1.6E-34 177.9 19.2 160 22-191 1-167 (167)
20 cd00878 Arf_Arl Arf (ADP-ribos 100.0 1.2E-29 2.7E-34 175.3 19.8 158 22-191 1-158 (158)
21 cd04155 Arl3 Arl3 subfamily. 100.0 2E-29 4.3E-34 176.8 20.8 164 16-191 10-173 (173)
22 KOG0084 GTPase Rab1/YPT1, smal 100.0 2.7E-30 5.9E-35 176.5 14.7 161 15-192 4-171 (205)
23 KOG0092 GTPase Rab5/YPT51 and 100.0 3E-30 6.4E-35 175.7 14.5 157 18-192 3-166 (200)
24 cd04121 Rab40 Rab40 subfamily. 100.0 1.7E-29 3.7E-34 178.9 18.8 157 17-192 3-166 (189)
25 cd04120 Rab12 Rab12 subfamily. 100.0 9.4E-30 2E-34 181.9 17.4 155 21-192 1-162 (202)
26 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 1.7E-29 3.7E-34 177.0 18.2 157 19-192 1-163 (172)
27 cd04175 Rap1 Rap1 subgroup. T 100.0 1.7E-29 3.6E-34 175.7 17.3 156 20-192 1-162 (164)
28 cd00877 Ran Ran (Ras-related n 100.0 1.4E-29 3.1E-34 176.4 16.5 153 21-192 1-158 (166)
29 cd04136 Rap_like Rap-like subf 100.0 1E-29 2.2E-34 176.5 15.4 156 20-192 1-162 (163)
30 cd04127 Rab27A Rab27a subfamil 100.0 4.2E-29 9.2E-34 176.2 18.8 157 18-191 2-175 (180)
31 cd04138 H_N_K_Ras_like H-Ras/N 100.0 1.7E-29 3.8E-34 174.9 16.5 157 20-193 1-162 (162)
32 cd04162 Arl9_Arfrp2_like Arl9/ 100.0 5.8E-29 1.2E-33 173.0 18.9 155 23-190 2-163 (164)
33 PTZ00369 Ras-like protein; Pro 100.0 1.8E-29 4E-34 179.4 16.6 158 18-192 3-166 (189)
34 KOG0094 GTPase Rab6/YPT6/Ryh1, 100.0 1.1E-29 2.4E-34 173.1 14.7 162 16-192 18-184 (221)
35 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 4.3E-29 9.4E-34 179.1 18.3 156 21-192 1-167 (201)
36 cd04126 Rab20 Rab20 subfamily. 100.0 4.3E-29 9.3E-34 180.4 18.1 165 21-192 1-189 (220)
37 cd01875 RhoG RhoG subfamily. 100.0 1.4E-29 3E-34 180.2 15.4 170 19-192 2-176 (191)
38 KOG0070 GTP-binding ADP-ribosy 100.0 9.3E-30 2E-34 172.7 13.3 167 14-192 11-177 (181)
39 cd04119 RJL RJL (RabJ-Like) su 100.0 6.2E-29 1.3E-33 173.2 17.4 155 21-192 1-166 (168)
40 cd04159 Arl10_like Arl10-like 100.0 3E-28 6.4E-33 167.9 20.2 156 23-190 2-158 (159)
41 cd04145 M_R_Ras_like M-Ras/R-R 100.0 6.3E-29 1.4E-33 172.7 16.4 157 20-193 2-164 (164)
42 cd04122 Rab14 Rab14 subfamily. 100.0 7.1E-29 1.5E-33 172.9 16.7 155 20-192 2-163 (166)
43 cd01864 Rab19 Rab19 subfamily. 100.0 1.3E-28 2.9E-33 171.3 18.0 157 19-192 2-165 (165)
44 smart00173 RAS Ras subfamily o 100.0 5.7E-29 1.2E-33 172.9 16.1 155 21-192 1-161 (164)
45 PLN03071 GTP-binding nuclear p 100.0 1.1E-28 2.4E-33 178.9 17.9 156 17-192 10-171 (219)
46 cd04176 Rap2 Rap2 subgroup. T 100.0 3.5E-29 7.6E-34 173.9 14.6 156 20-192 1-162 (163)
47 cd01867 Rab8_Rab10_Rab13_like 100.0 3.2E-28 6.9E-33 169.8 19.3 156 19-192 2-164 (167)
48 cd01874 Cdc42 Cdc42 subfamily. 100.0 1.1E-28 2.3E-33 173.3 16.0 167 21-191 2-173 (175)
49 cd04117 Rab15 Rab15 subfamily. 100.0 4.3E-28 9.4E-33 168.2 18.8 153 21-191 1-160 (161)
50 cd01860 Rab5_related Rab5-rela 100.0 3.4E-28 7.5E-33 168.8 17.6 155 20-192 1-162 (163)
51 cd01865 Rab3 Rab3 subfamily. 100.0 4.3E-28 9.4E-33 168.8 17.9 154 21-192 2-162 (165)
52 cd04116 Rab9 Rab9 subfamily. 100.0 5.1E-28 1.1E-32 169.2 18.2 159 18-192 3-170 (170)
53 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 1.4E-28 3E-33 173.5 15.3 169 17-191 2-178 (182)
54 KOG0075 GTP-binding ADP-ribosy 100.0 7.9E-29 1.7E-33 161.4 12.9 172 4-192 9-181 (186)
55 cd04133 Rop_like Rop subfamily 100.0 8.1E-29 1.8E-33 173.7 14.0 153 21-191 2-171 (176)
56 cd04110 Rab35 Rab35 subfamily. 100.0 5.1E-28 1.1E-32 173.3 18.4 156 18-192 4-166 (199)
57 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 100.0 5.4E-28 1.2E-32 168.4 18.1 154 21-192 3-163 (166)
58 cd01868 Rab11_like Rab11-like. 100.0 8.6E-28 1.9E-32 167.2 19.0 155 20-192 3-164 (165)
59 cd04106 Rab23_lke Rab23-like s 100.0 5.8E-28 1.3E-32 167.5 17.7 152 21-191 1-161 (162)
60 cd04140 ARHI_like ARHI subfami 100.0 1.6E-28 3.5E-33 171.0 14.8 154 21-191 2-163 (165)
61 cd04109 Rab28 Rab28 subfamily. 100.0 6.9E-28 1.5E-32 174.5 18.4 155 21-192 1-165 (215)
62 cd01871 Rac1_like Rac1-like su 100.0 2.2E-28 4.7E-33 171.6 15.1 167 20-191 1-173 (174)
63 cd04113 Rab4 Rab4 subfamily. 100.0 1.1E-27 2.3E-32 166.1 18.3 154 21-192 1-161 (161)
64 cd04144 Ras2 Ras2 subfamily. 100.0 5.4E-28 1.2E-32 172.0 17.0 154 22-192 1-162 (190)
65 cd04103 Centaurin_gamma Centau 100.0 4.5E-28 9.8E-33 167.4 16.1 151 21-192 1-158 (158)
66 cd01861 Rab6 Rab6 subfamily. 100.0 1.4E-27 3.1E-32 165.4 18.6 154 21-192 1-161 (161)
67 cd04108 Rab36_Rab34 Rab34/Rab3 100.0 1.3E-27 2.8E-32 167.1 18.5 154 22-191 2-163 (170)
68 cd04112 Rab26 Rab26 subfamily. 100.0 1.4E-27 3.1E-32 170.0 18.7 154 21-192 1-162 (191)
69 cd04128 Spg1 Spg1p. Spg1p (se 100.0 8.4E-28 1.8E-32 169.7 17.0 157 21-192 1-165 (182)
70 cd04111 Rab39 Rab39 subfamily. 100.0 9E-28 1.9E-32 173.3 17.5 156 20-192 2-165 (211)
71 cd04124 RabL2 RabL2 subfamily. 100.0 5.4E-28 1.2E-32 167.7 15.7 151 21-191 1-156 (161)
72 KOG0071 GTP-binding ADP-ribosy 100.0 1E-27 2.2E-32 155.1 15.6 174 6-192 4-177 (180)
73 cd04115 Rab33B_Rab33A Rab33B/R 100.0 1.9E-27 4.2E-32 166.3 18.4 158 20-193 2-169 (170)
74 cd01866 Rab2 Rab2 subfamily. 100.0 3.1E-27 6.8E-32 164.9 19.3 156 19-192 3-165 (168)
75 cd04101 RabL4 RabL4 (Rab-like4 100.0 1.3E-27 2.9E-32 166.0 17.2 154 21-192 1-163 (164)
76 cd01863 Rab18 Rab18 subfamily. 100.0 3E-27 6.4E-32 163.8 18.7 155 21-192 1-161 (161)
77 cd04177 RSR1 RSR1 subgroup. R 100.0 7.3E-28 1.6E-32 168.1 15.4 157 20-192 1-163 (168)
78 cd04131 Rnd Rnd subfamily. Th 100.0 4.5E-28 9.8E-33 170.4 14.4 166 20-190 1-173 (178)
79 cd04143 Rhes_like Rhes_like su 100.0 3.9E-27 8.4E-32 173.2 19.4 155 21-191 1-169 (247)
80 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 1.5E-27 3.3E-32 173.3 16.8 168 19-191 12-186 (232)
81 cd04134 Rho3 Rho3 subfamily. 100.0 6.1E-28 1.3E-32 171.6 13.8 168 21-192 1-173 (189)
82 cd04139 RalA_RalB RalA/RalB su 100.0 4.8E-27 1E-31 163.0 18.0 155 21-192 1-161 (164)
83 cd01862 Rab7 Rab7 subfamily. 100.0 3.7E-27 8.1E-32 164.9 17.5 155 21-191 1-165 (172)
84 PLN03118 Rab family protein; P 100.0 7.2E-27 1.6E-31 168.8 19.3 159 17-192 11-176 (211)
85 KOG0098 GTPase Rab2, small G p 100.0 1.4E-27 3.1E-32 161.6 14.3 153 17-190 3-165 (216)
86 cd04123 Rab21 Rab21 subfamily. 100.0 4E-27 8.7E-32 163.1 16.8 154 21-192 1-161 (162)
87 smart00175 RAB Rab subfamily o 100.0 8.9E-27 1.9E-31 161.8 18.5 154 21-192 1-161 (164)
88 cd04132 Rho4_like Rho4-like su 100.0 5E-27 1.1E-31 166.6 16.8 154 21-192 1-166 (187)
89 cd04125 RabA_like RabA-like su 100.0 3.3E-27 7.2E-32 167.7 15.9 154 21-192 1-161 (188)
90 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 100.0 3.4E-27 7.3E-32 170.6 16.0 167 20-190 1-173 (222)
91 smart00176 RAN Ran (Ras-relate 100.0 3.2E-27 7E-32 168.6 15.7 147 26-192 1-153 (200)
92 cd01893 Miro1 Miro1 subfamily. 100.0 5.7E-27 1.2E-31 163.3 16.4 159 21-192 1-163 (166)
93 PLN03110 Rab GTPase; Provision 100.0 1.3E-26 2.9E-31 167.8 18.9 158 18-192 10-173 (216)
94 KOG0078 GTP-binding protein SE 100.0 5.8E-27 1.3E-31 162.4 16.1 156 16-192 8-173 (207)
95 cd00154 Rab Rab family. Rab G 100.0 1.9E-26 4.2E-31 158.8 18.0 152 21-190 1-159 (159)
96 cd04142 RRP22 RRP22 subfamily. 100.0 1.2E-26 2.5E-31 165.8 17.4 155 21-191 1-172 (198)
97 cd01892 Miro2 Miro2 subfamily. 100.0 1.6E-26 3.4E-31 161.5 17.5 153 18-192 2-165 (169)
98 KOG0080 GTPase Rab18, small G 100.0 2.2E-27 4.7E-32 157.0 12.1 160 16-192 7-173 (209)
99 cd04147 Ras_dva Ras-dva subfam 100.0 1.5E-26 3.3E-31 165.5 17.1 155 22-192 1-162 (198)
100 cd04118 Rab24 Rab24 subfamily. 100.0 2.2E-26 4.8E-31 164.1 17.7 153 21-192 1-165 (193)
101 cd04114 Rab30 Rab30 subfamily. 99.9 3.4E-26 7.4E-31 159.7 17.8 158 18-192 5-168 (169)
102 PLN03108 Rab family protein; P 99.9 6.8E-26 1.5E-30 163.5 19.4 157 18-192 4-167 (210)
103 cd00876 Ras Ras family. The R 99.9 3.6E-26 7.9E-31 158.0 17.2 154 22-192 1-160 (160)
104 cd04135 Tc10 TC10 subfamily. 99.9 1E-26 2.2E-31 163.1 14.6 168 21-192 1-173 (174)
105 cd04137 RheB Rheb (Ras Homolog 99.9 5.6E-26 1.2E-30 160.3 18.2 155 21-192 2-162 (180)
106 cd04148 RGK RGK subfamily. Th 99.9 3.2E-26 6.9E-31 166.3 17.1 153 21-192 1-162 (221)
107 cd04146 RERG_RasL11_like RERG/ 99.9 1.3E-26 2.7E-31 161.4 14.4 154 22-192 1-163 (165)
108 PF00071 Ras: Ras family; Int 99.9 2.5E-26 5.4E-31 159.3 15.7 153 22-192 1-160 (162)
109 cd00157 Rho Rho (Ras homology) 99.9 1E-26 2.2E-31 162.6 13.4 158 21-190 1-170 (171)
110 smart00174 RHO Rho (Ras homolo 99.9 9.9E-27 2.1E-31 163.2 13.4 164 23-191 1-170 (174)
111 KOG0076 GTP-binding ADP-ribosy 99.9 2.7E-27 5.9E-32 158.5 8.7 176 5-192 3-186 (197)
112 cd04130 Wrch_1 Wrch-1 subfamil 99.9 5.6E-26 1.2E-30 159.3 15.8 165 21-190 1-171 (173)
113 KOG0394 Ras-related GTPase [Ge 99.9 1.5E-26 3.3E-31 156.3 12.1 156 17-191 6-176 (210)
114 KOG0093 GTPase Rab3, small G p 99.9 3.1E-26 6.7E-31 149.4 12.9 155 17-192 18-182 (193)
115 cd01870 RhoA_like RhoA-like su 99.9 9.5E-26 2.1E-30 158.4 16.3 165 20-191 1-173 (175)
116 cd01898 Obg Obg subfamily. Th 99.9 1.9E-25 4.1E-30 156.1 15.9 156 22-192 2-170 (170)
117 KOG0072 GTP-binding ADP-ribosy 99.9 2E-26 4.3E-31 149.7 9.8 175 7-193 5-179 (182)
118 cd01897 NOG NOG1 is a nucleola 99.9 3.1E-25 6.8E-30 154.7 16.4 153 21-192 1-167 (168)
119 cd01873 RhoBTB RhoBTB subfamil 99.9 1.8E-25 4E-30 159.1 15.2 151 20-191 2-194 (195)
120 KOG0087 GTPase Rab11/YPT3, sma 99.9 1.4E-25 3E-30 155.1 13.3 158 16-191 10-174 (222)
121 KOG0086 GTPase Rab4, small G p 99.9 4.4E-25 9.5E-30 145.0 13.9 155 17-189 6-167 (214)
122 KOG0095 GTPase Rab30, small G 99.9 5.3E-26 1.1E-30 148.8 9.5 159 17-192 4-168 (213)
123 PTZ00132 GTP-binding nuclear p 99.9 1.5E-24 3.2E-29 157.2 18.0 157 17-192 6-167 (215)
124 KOG0079 GTP-binding protein H- 99.9 1.1E-25 2.4E-30 147.0 10.1 151 19-191 7-167 (198)
125 KOG0074 GTP-binding ADP-ribosy 99.9 5.9E-25 1.3E-29 142.5 12.4 166 15-192 12-178 (185)
126 cd01890 LepA LepA subfamily. 99.9 1.6E-24 3.6E-29 152.6 15.7 149 22-192 2-176 (179)
127 PRK12299 obgE GTPase CgtA; Rev 99.9 1.2E-24 2.7E-29 165.8 15.4 155 21-192 159-327 (335)
128 cd04129 Rho2 Rho2 subfamily. 99.9 9.3E-25 2E-29 155.0 13.8 166 20-191 1-171 (187)
129 PRK15494 era GTPase Era; Provi 99.9 2.9E-24 6.3E-29 164.7 17.2 154 18-192 50-215 (339)
130 cd01878 HflX HflX subfamily. 99.9 6.5E-24 1.4E-28 152.7 17.6 153 18-192 39-204 (204)
131 PF02421 FeoB_N: Ferrous iron 99.9 9.8E-25 2.1E-29 148.2 12.2 141 21-188 1-156 (156)
132 TIGR00436 era GTP-binding prot 99.9 5E-24 1.1E-28 159.2 15.5 150 22-192 2-163 (270)
133 cd04171 SelB SelB subfamily. 99.9 2.9E-24 6.4E-29 149.0 13.3 151 22-190 2-163 (164)
134 TIGR02729 Obg_CgtA Obg family 99.9 8.8E-24 1.9E-28 161.0 16.1 157 21-193 158-329 (329)
135 cd04105 SR_beta Signal recogni 99.9 2.5E-23 5.4E-28 149.2 16.6 169 22-190 2-202 (203)
136 cd01887 IF2_eIF5B IF2/eIF5B (i 99.9 1.7E-23 3.7E-28 145.8 15.4 157 22-191 2-164 (168)
137 KOG0091 GTPase Rab39, small G 99.9 1.7E-23 3.7E-28 139.0 13.8 159 16-191 4-171 (213)
138 PRK04213 GTP-binding protein; 99.9 2.7E-23 5.9E-28 149.1 16.0 157 18-192 7-191 (201)
139 cd00881 GTP_translation_factor 99.9 3.2E-23 6.9E-28 147.0 15.9 163 22-192 1-186 (189)
140 TIGR02528 EutP ethanolamine ut 99.9 4.3E-24 9.4E-29 145.0 10.7 134 22-189 2-141 (142)
141 cd01881 Obg_like The Obg-like 99.9 1.2E-23 2.5E-28 147.7 13.0 153 25-192 1-176 (176)
142 TIGR00231 small_GTP small GTP- 99.9 7.3E-23 1.6E-27 140.6 16.7 153 20-189 1-160 (161)
143 KOG0395 Ras-related GTPase [Ge 99.9 2.9E-23 6.2E-28 147.2 13.8 156 19-191 2-163 (196)
144 cd04102 RabL3 RabL3 (Rab-like3 99.9 3.6E-23 7.9E-28 147.7 14.3 115 21-135 1-143 (202)
145 cd01894 EngA1 EngA1 subfamily. 99.9 3.2E-23 7E-28 142.7 13.6 145 24-192 1-157 (157)
146 cd00882 Ras_like_GTPase Ras-li 99.9 6.7E-23 1.5E-27 139.7 15.0 150 25-190 1-157 (157)
147 TIGR03156 GTP_HflX GTP-binding 99.9 1.1E-22 2.3E-27 156.4 17.6 151 19-192 188-351 (351)
148 COG1159 Era GTPase [General fu 99.9 8.8E-23 1.9E-27 149.0 15.4 155 18-192 4-171 (298)
149 PRK03003 GTP-binding protein D 99.9 9.4E-23 2E-27 163.0 16.8 151 18-192 36-198 (472)
150 cd01889 SelB_euk SelB subfamil 99.9 1.2E-22 2.6E-27 144.8 15.4 157 21-192 1-185 (192)
151 cd04164 trmE TrmE (MnmE, ThdF, 99.9 1.5E-22 3.2E-27 139.4 15.1 143 21-192 2-156 (157)
152 cd04163 Era Era subfamily. Er 99.9 2E-22 4.3E-27 139.8 15.3 154 19-192 2-168 (168)
153 PF00009 GTP_EFTU: Elongation 99.9 7.2E-23 1.6E-27 145.4 12.8 162 19-192 2-186 (188)
154 cd01879 FeoB Ferrous iron tran 99.9 9.9E-23 2.1E-27 140.6 13.1 145 25-192 1-156 (158)
155 PRK03003 GTP-binding protein D 99.9 2.3E-22 5E-27 160.8 17.0 157 19-192 210-381 (472)
156 KOG0088 GTPase Rab21, small G 99.9 1.6E-23 3.4E-28 138.5 8.4 157 17-191 10-173 (218)
157 PRK00089 era GTPase Era; Revie 99.9 2E-22 4.4E-27 152.3 15.8 154 19-192 4-170 (292)
158 PRK05291 trmE tRNA modificatio 99.9 1.9E-22 4.1E-27 159.9 15.5 146 17-192 212-369 (449)
159 PRK15467 ethanolamine utilizat 99.9 1.6E-22 3.4E-27 139.7 13.0 140 22-192 3-146 (158)
160 PRK12296 obgE GTPase CgtA; Rev 99.9 2.2E-22 4.8E-27 159.1 15.3 155 21-192 160-339 (500)
161 PRK12297 obgE GTPase CgtA; Rev 99.9 3.6E-22 7.8E-27 156.0 16.3 151 22-192 160-326 (424)
162 TIGR00450 mnmE_trmE_thdF tRNA 99.9 9E-22 2E-26 155.3 17.6 150 15-192 198-359 (442)
163 cd01891 TypA_BipA TypA (tyrosi 99.9 1.2E-21 2.5E-26 139.9 16.6 148 22-184 4-173 (194)
164 TIGR03594 GTPase_EngA ribosome 99.9 2.8E-22 6.1E-27 159.1 13.9 156 19-191 171-342 (429)
165 COG1160 Predicted GTPases [Gen 99.9 5.4E-22 1.2E-26 152.4 14.8 148 21-192 4-164 (444)
166 cd01895 EngA2 EngA2 subfamily. 99.9 2.2E-21 4.7E-26 135.6 16.8 155 20-191 2-173 (174)
167 cd01888 eIF2_gamma eIF2-gamma 99.9 4E-22 8.7E-27 143.1 13.1 159 21-192 1-198 (203)
168 PRK11058 GTPase HflX; Provisio 99.9 1.8E-21 3.9E-26 152.8 17.7 151 21-192 198-361 (426)
169 TIGR03594 GTPase_EngA ribosome 99.9 1.1E-21 2.5E-26 155.7 16.8 147 22-192 1-159 (429)
170 PRK12298 obgE GTPase CgtA; Rev 99.9 9.5E-22 2.1E-26 152.8 15.4 157 22-192 161-332 (390)
171 PRK00454 engB GTP-binding prot 99.9 1.3E-21 2.8E-26 139.7 14.5 159 16-193 20-194 (196)
172 PRK00093 GTP-binding protein D 99.9 1.4E-21 3.1E-26 155.3 16.0 146 21-190 2-159 (435)
173 TIGR00487 IF-2 translation ini 99.9 2E-21 4.3E-26 157.7 17.0 161 16-190 83-247 (587)
174 KOG0081 GTPase Rab27, small G 99.9 4.9E-23 1.1E-27 136.2 6.2 153 19-191 8-179 (219)
175 PLN00023 GTP-binding protein; 99.9 1.7E-21 3.7E-26 145.9 15.1 119 17-135 18-165 (334)
176 KOG0097 GTPase Rab14, small G 99.9 3.6E-21 7.9E-26 125.2 14.2 155 17-189 8-169 (215)
177 TIGR03598 GTPase_YsxC ribosome 99.9 1.1E-21 2.4E-26 138.2 12.9 145 17-182 15-179 (179)
178 PRK05306 infB translation init 99.9 2.6E-21 5.7E-26 160.6 16.6 160 17-190 287-449 (787)
179 TIGR01393 lepA GTP-binding pro 99.9 5.3E-21 1.1E-25 155.9 17.7 149 22-192 5-179 (595)
180 COG1100 GTPase SAR1 and relate 99.9 4.9E-21 1.1E-25 139.1 15.4 171 19-192 4-184 (219)
181 KOG0393 Ras-related small GTPa 99.9 1.3E-22 2.9E-27 141.2 5.8 169 18-190 2-176 (198)
182 COG2229 Predicted GTPase [Gene 99.9 1.4E-20 3E-25 128.0 15.1 158 15-191 5-176 (187)
183 COG1160 Predicted GTPases [Gen 99.9 6.7E-21 1.5E-25 146.4 14.7 156 19-191 177-349 (444)
184 cd00880 Era_like Era (E. coli 99.9 4.8E-21 1E-25 131.7 12.7 151 25-192 1-163 (163)
185 TIGR00491 aIF-2 translation in 99.9 3.3E-21 7.2E-26 156.2 13.7 167 19-190 3-213 (590)
186 CHL00189 infB translation init 99.9 1.4E-20 2.9E-25 155.1 17.3 161 16-190 240-407 (742)
187 PRK09518 bifunctional cytidyla 99.9 1.3E-20 2.8E-25 157.2 16.8 156 19-191 449-619 (712)
188 PRK09518 bifunctional cytidyla 99.9 9.7E-21 2.1E-25 157.9 16.1 150 19-192 274-435 (712)
189 PRK00093 GTP-binding protein D 99.9 6.9E-21 1.5E-25 151.4 14.2 155 19-190 172-341 (435)
190 KOG0083 GTPase Rab26/Rab37, sm 99.9 1.6E-22 3.5E-27 130.1 3.9 147 25-192 2-159 (192)
191 TIGR00475 selB selenocysteine- 99.9 5.3E-21 1.1E-25 155.7 13.2 157 21-191 1-164 (581)
192 PF08477 Miro: Miro-like prote 99.9 1.8E-21 3.9E-26 128.2 8.5 109 22-132 1-119 (119)
193 PRK05433 GTP-binding protein L 99.9 5.3E-20 1.1E-24 150.2 18.2 150 21-192 8-183 (600)
194 cd04166 CysN_ATPS CysN_ATPS su 99.9 3.7E-20 8E-25 133.4 14.4 149 22-184 1-185 (208)
195 PTZ00099 rab6; Provisional 99.8 5.8E-20 1.3E-24 128.9 14.7 127 48-192 9-141 (176)
196 KOG0090 Signal recognition par 99.8 6.9E-20 1.5E-24 127.3 14.2 175 17-192 35-238 (238)
197 COG0218 Predicted GTPase [Gene 99.8 1.2E-19 2.7E-24 126.0 15.4 154 19-192 23-196 (200)
198 PRK09554 feoB ferrous iron tra 99.8 3.4E-20 7.3E-25 154.6 14.7 150 19-191 2-166 (772)
199 cd01896 DRG The developmentall 99.8 9.8E-20 2.1E-24 133.1 15.1 149 22-192 2-225 (233)
200 COG0486 ThdF Predicted GTPase 99.8 1.1E-19 2.4E-24 140.1 15.9 150 16-192 213-375 (454)
201 cd01884 EF_Tu EF-Tu subfamily. 99.8 1.7E-19 3.8E-24 128.2 15.7 149 20-181 2-171 (195)
202 PRK12317 elongation factor 1-a 99.8 6.3E-20 1.4E-24 145.3 14.1 154 17-184 3-196 (425)
203 cd04165 GTPBP1_like GTPBP1-lik 99.8 1.7E-19 3.7E-24 130.9 15.1 164 22-190 1-220 (224)
204 TIGR03680 eif2g_arch translati 99.8 7.9E-20 1.7E-24 143.6 14.0 161 18-191 2-194 (406)
205 PF10662 PduV-EutP: Ethanolami 99.8 5.8E-20 1.2E-24 122.3 10.6 137 21-190 2-143 (143)
206 TIGR00437 feoB ferrous iron tr 99.8 4.4E-20 9.5E-25 150.5 11.6 142 27-191 1-153 (591)
207 cd01883 EF1_alpha Eukaryotic e 99.8 3.2E-19 7E-24 129.5 14.3 151 22-183 1-195 (219)
208 PRK04000 translation initiatio 99.8 2.4E-19 5.2E-24 140.9 14.3 166 14-192 3-200 (411)
209 COG0370 FeoB Fe2+ transport sy 99.8 3.9E-19 8.4E-24 142.5 15.6 145 19-190 2-161 (653)
210 TIGR00483 EF-1_alpha translati 99.8 9.8E-20 2.1E-24 144.2 12.2 157 17-183 4-197 (426)
211 cd04168 TetM_like Tet(M)-like 99.8 6.6E-19 1.4E-23 128.9 14.2 166 22-192 1-234 (237)
212 KOG1489 Predicted GTP-binding 99.8 4.4E-19 9.5E-24 130.2 12.7 152 21-191 197-365 (366)
213 PRK10512 selenocysteinyl-tRNA- 99.8 4.9E-19 1.1E-23 144.8 14.2 155 22-191 2-164 (614)
214 cd01876 YihA_EngB The YihA (En 99.8 1.1E-18 2.5E-23 121.2 14.1 154 22-192 1-170 (170)
215 TIGR01394 TypA_BipA GTP-bindin 99.8 1.8E-18 3.9E-23 140.9 16.8 156 22-192 3-190 (594)
216 KOG1423 Ras-like GTPase ERA [C 99.8 7.8E-19 1.7E-23 128.3 12.9 168 18-191 70-269 (379)
217 PRK10218 GTP-binding protein; 99.8 1.1E-18 2.3E-23 142.1 15.0 158 20-192 5-194 (607)
218 PRK04004 translation initiatio 99.8 8.1E-19 1.8E-23 142.8 14.1 162 17-190 3-215 (586)
219 COG1084 Predicted GTPase [Gene 99.8 8E-18 1.7E-22 124.4 16.4 169 3-190 150-333 (346)
220 COG0532 InfB Translation initi 99.8 3.7E-18 8E-23 133.5 15.2 158 18-189 3-166 (509)
221 KOG4252 GTP-binding protein [S 99.8 3.6E-20 7.7E-25 125.1 3.5 157 17-192 17-180 (246)
222 PRK12736 elongation factor Tu; 99.8 4.1E-18 9E-23 133.5 15.2 164 16-192 8-200 (394)
223 PF09439 SRPRB: Signal recogni 99.8 3.6E-19 7.8E-24 123.6 8.0 122 19-141 2-132 (181)
224 COG2262 HflX GTPases [General 99.8 3.2E-17 7E-22 124.6 16.7 154 17-192 189-355 (411)
225 PRK12735 elongation factor Tu; 99.8 1.5E-17 3.3E-22 130.4 14.9 163 16-191 8-201 (396)
226 CHL00071 tufA elongation facto 99.8 2E-17 4.4E-22 130.2 15.1 152 16-180 8-180 (409)
227 cd01886 EF-G Elongation factor 99.8 2.6E-17 5.6E-22 122.6 14.7 123 22-149 1-147 (270)
228 cd04169 RF3 RF3 subfamily. Pe 99.8 3.7E-17 7.9E-22 121.7 14.6 122 22-148 4-153 (267)
229 TIGR02034 CysN sulfate adenyly 99.8 1.1E-17 2.3E-22 131.6 12.2 149 21-183 1-187 (406)
230 KOG1673 Ras GTPases [General f 99.8 1E-17 2.2E-22 110.7 9.8 161 17-192 17-185 (205)
231 TIGR00485 EF-Tu translation el 99.8 3.9E-17 8.5E-22 128.1 14.9 116 15-135 7-142 (394)
232 PLN03126 Elongation factor Tu; 99.8 6.4E-17 1.4E-21 128.8 16.1 153 14-179 75-248 (478)
233 PRK05124 cysN sulfate adenylyl 99.8 2.2E-17 4.8E-22 131.8 13.5 156 16-184 23-216 (474)
234 KOG3883 Ras family small GTPas 99.7 8E-17 1.7E-21 106.3 13.3 160 18-192 7-174 (198)
235 PRK00049 elongation factor Tu; 99.7 5.2E-17 1.1E-21 127.3 14.8 163 16-191 8-201 (396)
236 PRK00741 prfC peptide chain re 99.7 7.1E-17 1.5E-21 130.0 15.1 126 18-148 8-161 (526)
237 PLN03127 Elongation factor Tu; 99.7 1.4E-16 3E-21 126.2 16.4 165 14-191 55-250 (447)
238 PRK05506 bifunctional sulfate 99.7 4.2E-17 9.1E-22 134.8 13.8 154 16-183 20-211 (632)
239 PTZ00141 elongation factor 1- 99.7 4.8E-17 1.1E-21 128.9 13.2 156 17-183 4-203 (446)
240 cd04170 EF-G_bact Elongation f 99.7 1E-16 2.2E-21 119.8 13.5 110 22-136 1-131 (268)
241 cd04167 Snu114p Snu114p subfam 99.7 6.2E-17 1.3E-21 117.1 11.9 108 22-134 2-136 (213)
242 PF01926 MMR_HSR1: 50S ribosom 99.7 2.6E-16 5.6E-21 103.2 13.6 103 22-130 1-116 (116)
243 PRK13351 elongation factor G; 99.7 1.9E-16 4.1E-21 132.2 16.0 114 18-136 6-140 (687)
244 cd04104 p47_IIGP_like p47 (47- 99.7 3E-17 6.5E-22 117.3 9.5 160 20-192 1-183 (197)
245 PTZ00327 eukaryotic translatio 99.7 1.3E-16 2.9E-21 126.2 13.8 163 17-192 31-232 (460)
246 KOG0462 Elongation factor-type 99.7 7.8E-17 1.7E-21 125.9 12.2 152 22-192 62-234 (650)
247 PLN00043 elongation factor 1-a 99.7 1.3E-16 2.8E-21 126.5 13.4 151 17-183 4-203 (447)
248 COG0536 Obg Predicted GTPase [ 99.7 8.4E-17 1.8E-21 119.6 11.4 156 22-192 161-332 (369)
249 KOG0096 GTPase Ran/TC4/GSP1 (n 99.7 3E-17 6.5E-22 112.0 8.3 155 19-192 9-168 (216)
250 PF04670 Gtr1_RagA: Gtr1/RagA 99.7 9.3E-17 2E-21 116.2 10.3 162 22-192 1-175 (232)
251 TIGR00503 prfC peptide chain r 99.7 6.2E-16 1.3E-20 124.7 16.0 126 18-148 9-162 (527)
252 KOG1707 Predicted Ras related/ 99.7 5.8E-17 1.3E-21 127.4 9.4 161 17-192 6-174 (625)
253 cd01899 Ygr210 Ygr210 subfamil 99.7 1.3E-15 2.8E-20 115.6 15.5 76 23-98 1-110 (318)
254 KOG1145 Mitochondrial translat 99.7 1.1E-15 2.4E-20 119.6 15.4 159 17-189 150-312 (683)
255 cd01885 EF2 EF2 (for archaea a 99.7 1.4E-15 3.1E-20 110.0 14.5 108 22-134 2-138 (222)
256 COG3596 Predicted GTPase [Gene 99.7 4.1E-17 8.8E-22 118.1 5.9 163 17-192 36-221 (296)
257 PRK12739 elongation factor G; 99.7 2E-15 4.3E-20 126.0 16.5 113 19-136 7-140 (691)
258 COG0481 LepA Membrane GTPase L 99.7 2.4E-16 5.2E-21 121.5 9.5 149 22-192 11-185 (603)
259 cd01852 AIG1 AIG1 (avrRpt2-ind 99.7 1.8E-15 4E-20 108.1 12.8 161 21-192 1-183 (196)
260 TIGR00484 EF-G translation elo 99.7 2.8E-15 6.2E-20 125.1 14.9 111 21-136 11-142 (689)
261 COG5256 TEF1 Translation elong 99.7 1.2E-15 2.6E-20 116.1 11.5 157 16-183 3-201 (428)
262 PRK00007 elongation factor G; 99.7 6.2E-15 1.3E-19 123.0 16.1 112 20-136 10-142 (693)
263 KOG1191 Mitochondrial GTPase [ 99.6 4.6E-15 1E-19 114.9 13.4 169 11-192 259-449 (531)
264 COG1163 DRG Predicted GTPase [ 99.6 1E-14 2.2E-19 107.8 13.3 81 20-100 63-153 (365)
265 COG4917 EutP Ethanolamine util 99.6 1.3E-15 2.9E-20 97.2 7.3 138 21-190 2-143 (148)
266 PRK09866 hypothetical protein; 99.6 3.7E-14 8E-19 114.1 16.6 114 64-190 230-350 (741)
267 cd00066 G-alpha G protein alph 99.6 1E-14 2.2E-19 111.2 12.8 132 53-191 150-309 (317)
268 PRK13768 GTPase; Provisional 99.6 4.9E-15 1.1E-19 109.6 10.3 128 64-192 97-246 (253)
269 smart00275 G_alpha G protein a 99.6 3.3E-14 7.2E-19 109.3 15.1 133 53-191 173-332 (342)
270 PRK14845 translation initiatio 99.6 1.6E-14 3.4E-19 123.2 13.6 155 31-190 472-670 (1049)
271 PRK12740 elongation factor G; 99.6 5.1E-14 1.1E-18 117.5 16.3 106 26-136 1-127 (668)
272 PF03029 ATP_bind_1: Conserved 99.6 3.9E-15 8.5E-20 108.8 6.3 123 65-192 92-236 (238)
273 PRK09602 translation-associate 99.6 1.7E-13 3.7E-18 107.0 15.1 78 21-98 2-113 (396)
274 KOG1532 GTPase XAB1, interacts 99.6 4.5E-15 9.7E-20 107.4 5.3 176 14-192 13-263 (366)
275 cd01882 BMS1 Bms1. Bms1 is an 99.5 1.4E-13 3E-18 100.3 12.5 146 16-180 35-183 (225)
276 cd01850 CDC_Septin CDC/Septin. 99.5 1E-13 2.2E-18 103.8 11.5 111 19-135 3-157 (276)
277 PRK09435 membrane ATPase/prote 99.5 1.8E-13 3.9E-18 104.1 13.0 108 63-192 148-259 (332)
278 KOG4423 GTP-binding protein-li 99.5 2.5E-16 5.5E-21 107.2 -2.3 158 19-191 24-192 (229)
279 cd01853 Toc34_like Toc34-like 99.5 3.7E-13 8E-18 99.1 14.0 120 14-135 25-163 (249)
280 KOG1144 Translation initiation 99.5 6.5E-14 1.4E-18 113.1 8.9 169 18-191 473-685 (1064)
281 TIGR00490 aEF-2 translation el 99.5 2.3E-13 5E-18 114.1 11.7 137 3-147 5-167 (720)
282 COG5257 GCD11 Translation init 99.5 1.2E-13 2.5E-18 102.2 8.1 161 18-192 8-201 (415)
283 COG1703 ArgK Putative periplas 99.5 3E-13 6.5E-18 99.4 9.3 162 11-192 42-253 (323)
284 TIGR00101 ureG urease accessor 99.5 1E-12 2.3E-17 93.8 11.8 102 64-192 92-195 (199)
285 TIGR00991 3a0901s02IAP34 GTP-b 99.5 2.4E-12 5.3E-17 96.4 14.0 115 18-134 36-166 (313)
286 KOG0461 Selenocysteine-specifi 99.5 7.6E-13 1.7E-17 98.9 11.0 158 20-192 7-192 (522)
287 PF03308 ArgK: ArgK protein; 99.5 9E-14 2E-18 100.7 6.0 154 15-191 24-228 (266)
288 KOG0082 G-protein alpha subuni 99.4 3.6E-12 7.7E-17 96.7 13.4 134 51-191 182-342 (354)
289 PTZ00416 elongation factor 2; 99.4 1.6E-12 3.5E-17 110.4 12.9 113 17-134 16-157 (836)
290 COG3276 SelB Selenocysteine-sp 99.4 1.1E-12 2.4E-17 100.8 10.6 154 22-192 2-161 (447)
291 PLN00116 translation elongatio 99.4 2E-12 4.3E-17 110.1 13.1 114 16-134 15-163 (843)
292 COG1217 TypA Predicted membran 99.4 1.1E-12 2.4E-17 101.4 10.3 159 22-192 7-194 (603)
293 PTZ00258 GTP-binding protein; 99.4 8.8E-12 1.9E-16 96.7 15.2 85 14-98 15-126 (390)
294 COG2895 CysN GTPases - Sulfate 99.4 1.3E-12 2.9E-17 97.7 10.0 151 18-182 4-192 (431)
295 PF04548 AIG1: AIG1 family; I 99.4 8.8E-12 1.9E-16 90.1 13.7 119 21-141 1-136 (212)
296 KOG1490 GTP-binding protein CR 99.4 2.6E-12 5.7E-17 100.1 10.2 160 17-190 165-338 (620)
297 TIGR00073 hypB hydrogenase acc 99.4 7.4E-13 1.6E-17 95.4 6.1 148 19-193 21-207 (207)
298 KOG0458 Elongation factor 1 al 99.4 3.9E-12 8.5E-17 100.6 10.1 159 17-184 174-373 (603)
299 TIGR00750 lao LAO/AO transport 99.4 2.1E-11 4.5E-16 92.6 13.3 109 63-191 126-236 (300)
300 PRK07560 elongation factor EF- 99.4 1.1E-11 2.3E-16 104.4 12.8 113 17-134 17-152 (731)
301 PF00350 Dynamin_N: Dynamin fa 99.3 7.2E-11 1.6E-15 82.2 11.0 64 64-131 101-168 (168)
302 KOG0410 Predicted GTP binding 99.3 3.1E-11 6.7E-16 89.6 9.3 149 17-192 175-340 (410)
303 KOG3886 GTP-binding protein [S 99.3 2E-11 4.3E-16 86.5 7.8 121 19-141 3-136 (295)
304 TIGR00993 3a0901s04IAP86 chlor 99.3 1.3E-10 2.8E-15 94.4 13.1 117 19-135 117-250 (763)
305 PF05049 IIGP: Interferon-indu 99.2 3.5E-11 7.7E-16 92.5 8.5 159 17-190 32-215 (376)
306 COG0480 FusA Translation elong 99.2 1E-10 2.2E-15 96.8 11.8 127 17-148 7-158 (697)
307 PRK10463 hydrogenase nickel in 99.2 1.1E-11 2.3E-16 92.3 5.0 56 121-191 230-287 (290)
308 COG0050 TufB GTPases - transla 99.2 1.2E-10 2.6E-15 85.5 10.1 160 13-192 5-200 (394)
309 COG4108 PrfC Peptide chain rel 99.2 6.5E-11 1.4E-15 91.1 8.9 127 19-150 11-165 (528)
310 TIGR02836 spore_IV_A stage IV 99.2 6.3E-10 1.4E-14 86.0 14.1 120 10-133 7-192 (492)
311 TIGR00157 ribosome small subun 99.2 4.3E-11 9.3E-16 88.2 7.3 96 75-191 24-121 (245)
312 smart00053 DYNc Dynamin, GTPas 99.2 6.7E-10 1.5E-14 81.2 13.2 115 18-136 24-207 (240)
313 COG0378 HypB Ni2+-binding GTPa 99.2 8.6E-11 1.9E-15 81.6 8.0 79 90-192 120-200 (202)
314 COG5258 GTPBP1 GTPase [General 99.2 1.5E-10 3.3E-15 87.8 9.9 168 17-189 114-335 (527)
315 PF00503 G-alpha: G-protein al 99.2 7.7E-11 1.7E-15 92.7 8.5 134 53-191 224-388 (389)
316 KOG2486 Predicted GTPase [Gene 99.2 9.8E-11 2.1E-15 85.3 6.8 165 17-190 133-313 (320)
317 PF00735 Septin: Septin; Inte 99.2 3.6E-10 7.8E-15 84.7 10.1 110 20-135 4-156 (281)
318 PRK09601 GTP-binding protein Y 99.1 5.8E-10 1.3E-14 85.8 10.2 78 21-98 3-107 (364)
319 cd01900 YchF YchF subfamily. 99.1 4.6E-10 1E-14 83.6 8.7 76 23-98 1-103 (274)
320 smart00010 small_GTPase Small 99.1 1.2E-10 2.6E-15 76.8 5.1 88 21-134 1-90 (124)
321 KOG3905 Dynein light intermedi 99.1 4.5E-09 9.8E-14 78.4 13.5 159 19-192 51-289 (473)
322 KOG1707 Predicted Ras related/ 99.1 4E-09 8.6E-14 84.0 13.0 129 17-150 422-560 (625)
323 cd01859 MJ1464 MJ1464. This f 99.1 3.9E-10 8.5E-15 77.6 6.6 94 77-192 2-95 (156)
324 KOG0463 GTP-binding protein GP 99.1 4.1E-10 8.9E-15 85.5 6.7 164 20-188 133-353 (641)
325 KOG0468 U5 snRNP-specific prot 99.0 2.5E-09 5.3E-14 86.4 10.3 118 12-134 120-262 (971)
326 KOG0085 G protein subunit Galp 99.0 7.3E-10 1.6E-14 78.9 6.5 134 51-190 186-346 (359)
327 cd01858 NGP_1 NGP-1. Autoanti 99.0 1.3E-09 2.9E-14 75.1 7.0 89 84-191 5-93 (157)
328 cd01855 YqeH YqeH. YqeH is an 99.0 1.9E-09 4.2E-14 76.6 7.8 102 74-192 21-124 (190)
329 cd01858 NGP_1 NGP-1. Autoanti 99.0 3.3E-09 7.1E-14 73.1 8.0 55 19-73 101-156 (157)
330 KOG1143 Predicted translation 98.9 3.3E-09 7.2E-14 80.5 7.3 165 19-188 166-383 (591)
331 KOG3887 Predicted small GTPase 98.9 1E-08 2.2E-13 73.6 8.5 161 20-192 27-201 (347)
332 cd04178 Nucleostemin_like Nucl 98.9 4.2E-09 9.1E-14 73.5 6.5 57 17-74 114-172 (172)
333 cd01856 YlqF YlqF. Proteins o 98.9 4.5E-09 9.8E-14 73.4 6.5 97 71-191 2-99 (171)
334 PRK12289 GTPase RsgA; Reviewed 98.9 9.1E-09 2E-13 79.4 8.3 88 83-191 85-173 (352)
335 cd01857 HSR1_MMR1 HSR1/MMR1. 98.9 9.9E-09 2.2E-13 69.4 6.8 52 22-74 85-138 (141)
336 COG5192 BMS1 GTP-binding prote 98.8 4E-08 8.7E-13 78.4 10.7 139 19-175 68-208 (1077)
337 KOG0460 Mitochondrial translat 98.8 2.6E-08 5.6E-13 74.9 8.9 117 16-136 50-185 (449)
338 TIGR03596 GTPase_YlqF ribosome 98.8 9.4E-09 2E-13 77.3 6.7 97 71-191 4-101 (276)
339 KOG0099 G protein subunit Galp 98.8 2.6E-08 5.6E-13 72.3 7.8 81 54-134 192-282 (379)
340 KOG0466 Translation initiation 98.8 2.2E-09 4.8E-14 79.4 2.1 162 17-192 35-240 (466)
341 cd01854 YjeQ_engC YjeQ/EngC. 98.8 2.2E-08 4.9E-13 75.6 7.6 87 83-190 74-161 (287)
342 PF05783 DLIC: Dynein light in 98.8 5.4E-07 1.2E-11 72.0 15.5 83 18-102 23-115 (472)
343 PRK00098 GTPase RsgA; Reviewed 98.8 1.8E-08 3.9E-13 76.5 6.6 85 85-190 78-164 (298)
344 COG0012 Predicted GTPase, prob 98.8 4.5E-08 9.8E-13 74.7 8.6 79 20-98 2-108 (372)
345 cd01849 YlqF_related_GTPase Yl 98.8 2E-08 4.4E-13 69.0 6.1 81 89-190 1-82 (155)
346 cd01859 MJ1464 MJ1464. This f 98.7 1.2E-07 2.5E-12 65.3 8.8 61 13-74 94-156 (156)
347 KOG0705 GTPase-activating prot 98.7 3.1E-08 6.7E-13 78.5 6.4 157 15-191 25-187 (749)
348 KOG1487 GTP-binding protein DR 98.7 4.4E-08 9.5E-13 71.1 6.5 80 21-100 60-149 (358)
349 PRK09563 rbgA GTPase YlqF; Rev 98.7 8.7E-08 1.9E-12 72.4 8.4 57 17-74 118-176 (287)
350 KOG1491 Predicted GTP-binding 98.7 8.7E-08 1.9E-12 72.0 8.0 85 14-98 14-125 (391)
351 KOG0447 Dynamin-like GTP bindi 98.7 1.4E-06 3E-11 69.6 15.0 85 64-151 412-511 (980)
352 COG5019 CDC3 Septin family pro 98.7 4.4E-07 9.5E-12 69.1 11.8 117 14-136 17-177 (373)
353 TIGR00092 GTP-binding protein 98.7 1.5E-07 3.2E-12 72.7 9.5 78 21-98 3-108 (368)
354 PRK12288 GTPase RsgA; Reviewed 98.7 1.3E-07 2.8E-12 73.0 9.1 88 86-191 119-206 (347)
355 cd01857 HSR1_MMR1 HSR1/MMR1. 98.7 4.8E-08 1E-12 66.1 5.9 79 82-180 6-84 (141)
356 PRK09563 rbgA GTPase YlqF; Rev 98.7 4E-08 8.7E-13 74.3 6.0 98 70-191 6-104 (287)
357 cd01855 YqeH YqeH. YqeH is an 98.7 7E-08 1.5E-12 68.6 6.6 55 19-74 126-190 (190)
358 TIGR03596 GTPase_YlqF ribosome 98.7 6.4E-08 1.4E-12 72.8 6.7 56 18-74 116-173 (276)
359 COG1161 Predicted GTPases [Gen 98.7 6.3E-08 1.4E-12 74.2 6.4 59 16-74 128-187 (322)
360 KOG2655 Septin family protein 98.7 4E-07 8.8E-12 69.6 10.5 114 17-136 18-173 (366)
361 TIGR03597 GTPase_YqeH ribosome 98.6 5.8E-08 1.3E-12 75.6 5.9 100 74-190 50-150 (360)
362 KOG1954 Endocytosis/signaling 98.6 7.6E-07 1.6E-11 67.9 11.2 129 18-153 56-240 (532)
363 KOG0467 Translation elongation 98.6 4.5E-08 9.8E-13 80.2 4.9 108 21-133 10-136 (887)
364 COG1618 Predicted nucleotide k 98.6 7.5E-07 1.6E-11 60.3 9.9 110 18-133 3-142 (179)
365 cd01851 GBP Guanylate-binding 98.6 1.8E-06 3.9E-11 63.0 12.8 118 17-134 4-147 (224)
366 cd01856 YlqF YlqF. Proteins o 98.6 1.3E-07 2.9E-12 66.0 6.4 57 17-74 112-170 (171)
367 KOG1534 Putative transcription 98.6 6.5E-07 1.4E-11 63.2 9.1 126 63-192 97-250 (273)
368 KOG0459 Polypeptide release fa 98.6 5.5E-08 1.2E-12 74.6 4.0 161 17-186 76-279 (501)
369 KOG1486 GTP-binding protein DR 98.6 3.4E-07 7.3E-12 66.3 7.8 96 19-114 61-167 (364)
370 cd03112 CobW_like The function 98.6 4.5E-07 9.8E-12 62.5 8.2 22 22-43 2-23 (158)
371 cd01849 YlqF_related_GTPase Yl 98.6 1.6E-07 3.5E-12 64.5 5.9 55 17-74 97-155 (155)
372 PRK10416 signal recognition pa 98.5 2E-06 4.3E-11 65.8 10.3 109 19-134 113-272 (318)
373 TIGR00064 ftsY signal recognit 98.5 2E-06 4.3E-11 64.5 10.0 66 62-134 153-230 (272)
374 PRK14974 cell division protein 98.5 2E-06 4.4E-11 66.1 10.2 66 63-135 222-293 (336)
375 TIGR03348 VI_IcmF type VI secr 98.4 1.2E-06 2.5E-11 77.8 9.3 113 21-135 112-257 (1169)
376 PF03193 DUF258: Protein of un 98.4 2.2E-07 4.8E-12 63.7 3.8 56 21-77 36-100 (161)
377 KOG0464 Elongation factor G [T 98.4 5.5E-08 1.2E-12 75.1 1.0 124 22-150 39-186 (753)
378 KOG0448 Mitofusin 1 GTPase, in 98.4 3.6E-06 7.9E-11 68.7 11.3 115 17-136 106-276 (749)
379 PRK12288 GTPase RsgA; Reviewed 98.4 3.9E-07 8.5E-12 70.4 4.7 55 22-77 207-270 (347)
380 KOG1547 Septin CDC10 and relat 98.4 3.2E-06 7E-11 60.9 8.6 112 17-134 43-197 (336)
381 PRK13796 GTPase YqeH; Provisio 98.4 1.6E-06 3.5E-11 67.7 7.2 100 75-191 57-157 (365)
382 PRK12289 GTPase RsgA; Reviewed 98.4 9.2E-07 2E-11 68.5 5.7 53 22-75 174-235 (352)
383 TIGR01425 SRP54_euk signal rec 98.3 2.5E-06 5.5E-11 67.4 8.0 108 20-134 100-252 (429)
384 KOG1424 Predicted GTP-binding 98.3 6.9E-07 1.5E-11 70.6 4.7 57 17-73 311-368 (562)
385 COG0523 Putative GTPases (G3E 98.3 1E-05 2.3E-10 61.8 10.9 81 64-150 85-174 (323)
386 PRK01889 GTPase RsgA; Reviewed 98.3 6E-06 1.3E-10 64.3 8.7 84 85-189 110-193 (356)
387 TIGR00157 ribosome small subun 98.3 1.3E-06 2.8E-11 64.6 4.5 53 21-77 121-184 (245)
388 TIGR03597 GTPase_YqeH ribosome 98.2 2.1E-06 4.5E-11 67.0 5.7 107 21-134 155-279 (360)
389 PF09547 Spore_IV_A: Stage IV 98.2 8.7E-05 1.9E-09 58.1 13.3 136 10-150 7-208 (492)
390 PRK13796 GTPase YqeH; Provisio 98.2 5.5E-06 1.2E-10 64.8 6.8 55 20-75 160-221 (365)
391 PF00448 SRP54: SRP54-type pro 98.2 2.9E-05 6.3E-10 55.4 9.9 66 63-135 83-154 (196)
392 COG1162 Predicted GTPases [Gen 98.2 1.8E-06 3.9E-11 64.6 3.8 23 22-44 166-188 (301)
393 cd03114 ArgK-like The function 98.2 5.8E-06 1.3E-10 56.3 5.9 58 63-132 91-148 (148)
394 PRK14722 flhF flagellar biosyn 98.2 1.1E-05 2.3E-10 62.9 7.8 117 18-134 135-294 (374)
395 PRK11537 putative GTP-binding 98.1 3.1E-05 6.8E-10 59.3 9.5 23 21-43 5-27 (318)
396 COG3640 CooC CO dehydrogenase 98.1 9.9E-06 2.1E-10 58.3 6.1 77 64-148 134-211 (255)
397 PF06858 NOG1: Nucleolar GTP-b 98.1 2.7E-05 5.8E-10 43.4 6.5 47 84-132 10-58 (58)
398 cd01854 YjeQ_engC YjeQ/EngC. 98.1 4.9E-06 1.1E-10 63.0 4.8 56 21-77 162-226 (287)
399 cd03222 ABC_RNaseL_inhibitor T 98.1 0.00013 2.8E-09 51.2 11.3 87 18-114 23-118 (177)
400 PF02492 cobW: CobW/HypB/UreG, 98.1 1.1E-05 2.4E-10 56.7 5.9 68 64-137 85-157 (178)
401 cd03115 SRP The signal recogni 98.1 2.8E-05 6.1E-10 54.3 7.8 65 63-134 82-152 (173)
402 PRK00098 GTPase RsgA; Reviewed 98.1 1.2E-05 2.7E-10 61.1 6.3 56 20-76 164-228 (298)
403 PRK11889 flhF flagellar biosyn 98.0 2E-05 4.3E-10 61.6 7.2 109 19-134 240-390 (436)
404 COG3523 IcmF Type VI protein s 98.0 1.7E-05 3.8E-10 69.4 7.6 112 22-135 127-270 (1188)
405 KOG2484 GTPase [General functi 98.0 3.8E-06 8.2E-11 64.6 3.1 56 17-73 249-306 (435)
406 PRK06995 flhF flagellar biosyn 98.0 0.00011 2.5E-09 59.1 11.4 24 19-42 255-278 (484)
407 PRK14721 flhF flagellar biosyn 98.0 2.4E-05 5.2E-10 61.9 6.8 109 19-134 190-339 (420)
408 KOG0465 Mitochondrial elongati 98.0 1.9E-06 4.2E-11 69.4 0.7 110 20-134 39-169 (721)
409 KOG0780 Signal recognition par 98.0 4.4E-05 9.4E-10 58.9 7.6 112 16-134 97-253 (483)
410 PRK12727 flagellar biosynthesi 98.0 2.9E-05 6.3E-10 62.8 7.0 110 18-134 348-497 (559)
411 PRK13695 putative NTPase; Prov 97.9 0.00018 4E-09 50.3 9.9 21 21-41 1-21 (174)
412 PRK14723 flhF flagellar biosyn 97.9 7.6E-05 1.6E-09 63.0 9.0 111 20-134 185-336 (767)
413 COG1419 FlhF Flagellar GTP-bin 97.9 8E-05 1.7E-09 58.1 7.7 109 19-134 202-351 (407)
414 PRK05703 flhF flagellar biosyn 97.9 0.00011 2.3E-09 58.7 8.5 108 20-134 221-370 (424)
415 PRK10867 signal recognition pa 97.8 0.00029 6.2E-09 56.2 10.6 80 63-149 183-269 (433)
416 PF13401 AAA_22: AAA domain; P 97.8 4.8E-05 1E-09 50.4 5.4 97 20-130 4-125 (131)
417 TIGR02475 CobW cobalamin biosy 97.8 0.00017 3.7E-09 55.9 8.9 23 21-43 5-27 (341)
418 COG1162 Predicted GTPases [Gen 97.8 0.00017 3.7E-09 54.2 8.3 87 85-191 77-165 (301)
419 cd04178 Nucleostemin_like Nucl 97.8 2.8E-05 6.1E-10 54.3 3.9 99 89-190 1-107 (172)
420 PRK00771 signal recognition pa 97.8 6.6E-05 1.4E-09 59.8 6.3 109 19-134 94-245 (437)
421 KOG1533 Predicted GTPase [Gene 97.8 2E-05 4.4E-10 56.7 3.0 67 63-134 96-176 (290)
422 KOG2423 Nucleolar GTPase [Gene 97.8 2.2E-05 4.8E-10 60.6 3.3 69 4-74 292-362 (572)
423 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.8 0.00078 1.7E-08 45.6 10.6 67 19-93 25-94 (144)
424 COG1116 TauB ABC-type nitrate/ 97.8 2.2E-05 4.9E-10 57.1 3.0 25 22-46 31-55 (248)
425 KOG2485 Conserved ATP/GTP bind 97.7 6.4E-05 1.4E-09 56.3 5.3 72 3-74 125-206 (335)
426 PRK12726 flagellar biosynthesi 97.7 0.00017 3.7E-09 56.2 7.8 23 19-41 205-227 (407)
427 PF13207 AAA_17: AAA domain; P 97.7 2.9E-05 6.2E-10 50.8 3.2 21 22-42 1-21 (121)
428 COG0552 FtsY Signal recognitio 97.7 0.00037 8E-09 53.0 9.1 127 17-150 136-314 (340)
429 cd03216 ABC_Carb_Monos_I This 97.7 0.00052 1.1E-08 47.5 9.3 26 19-44 25-50 (163)
430 KOG3859 Septins (P-loop GTPase 97.7 0.0003 6.6E-09 52.1 8.1 111 19-134 41-189 (406)
431 TIGR00959 ffh signal recogniti 97.7 0.00036 7.7E-09 55.6 9.2 81 63-150 182-269 (428)
432 cd01983 Fer4_NifH The Fer4_Nif 97.7 0.00043 9.3E-09 43.0 7.6 97 23-129 2-99 (99)
433 PRK04195 replication factor C 97.7 0.00073 1.6E-08 55.0 10.7 37 7-43 26-62 (482)
434 PRK08118 topology modulation p 97.6 4.5E-05 9.8E-10 53.0 3.2 23 21-43 2-24 (167)
435 PRK06731 flhF flagellar biosyn 97.6 0.00017 3.7E-09 53.9 6.2 110 19-135 74-225 (270)
436 PRK07261 topology modulation p 97.6 5E-05 1.1E-09 53.1 3.1 22 22-43 2-23 (171)
437 COG1136 SalX ABC-type antimicr 97.6 4.6E-05 1E-09 55.1 3.0 26 20-45 31-56 (226)
438 PRK12723 flagellar biosynthesi 97.6 0.001 2.2E-08 52.4 10.6 109 19-134 173-325 (388)
439 COG0563 Adk Adenylate kinase a 97.6 5.3E-05 1.1E-09 53.2 3.1 23 21-43 1-23 (178)
440 COG1126 GlnQ ABC-type polar am 97.6 8.1E-05 1.8E-09 53.2 3.8 28 19-46 27-54 (240)
441 PRK12724 flagellar biosynthesi 97.6 0.00017 3.7E-09 57.0 5.8 108 20-134 223-372 (432)
442 COG3839 MalK ABC-type sugar tr 97.6 0.0001 2.2E-09 56.6 4.4 24 22-45 31-54 (338)
443 PRK10751 molybdopterin-guanine 97.6 0.00031 6.8E-09 48.9 6.3 53 19-77 5-57 (173)
444 PF00004 AAA: ATPase family as 97.6 0.0012 2.7E-08 43.5 9.1 21 23-43 1-21 (132)
445 KOG0057 Mitochondrial Fe/S clu 97.6 0.0006 1.3E-08 55.0 8.6 23 19-41 377-399 (591)
446 KOG2484 GTPase [General functi 97.5 0.00017 3.6E-09 55.8 5.1 71 77-150 136-206 (435)
447 COG1134 TagH ABC-type polysacc 97.5 0.00014 3.1E-09 52.8 4.3 24 21-44 54-77 (249)
448 PF00005 ABC_tran: ABC transpo 97.5 9.2E-05 2E-09 49.5 3.2 26 19-44 10-35 (137)
449 PF05621 TniB: Bacterial TniB 97.5 0.0017 3.7E-08 49.0 10.1 114 5-131 47-190 (302)
450 smart00763 AAA_PrkA PrkA AAA d 97.5 0.00019 4E-09 55.6 5.0 38 3-42 63-100 (361)
451 COG4525 TauB ABC-type taurine 97.5 0.00018 3.9E-09 50.8 4.4 22 22-43 33-54 (259)
452 PF13555 AAA_29: P-loop contai 97.5 0.00012 2.7E-09 41.7 3.0 20 22-41 25-44 (62)
453 PF05729 NACHT: NACHT domain 97.5 0.0009 1.9E-08 46.0 8.0 20 23-42 3-22 (166)
454 COG3840 ThiQ ABC-type thiamine 97.5 9.9E-05 2.1E-09 51.4 3.0 26 19-44 24-49 (231)
455 cd02019 NK Nucleoside/nucleoti 97.5 0.00012 2.5E-09 43.1 2.9 21 23-43 2-22 (69)
456 COG3638 ABC-type phosphate/pho 97.5 0.00016 3.6E-09 52.3 4.1 21 22-42 32-52 (258)
457 cd02038 FleN-like FleN is a me 97.5 0.0011 2.5E-08 44.5 7.9 102 24-133 4-109 (139)
458 COG3842 PotA ABC-type spermidi 97.5 0.00019 4.2E-09 55.4 4.6 24 22-45 33-56 (352)
459 PF13671 AAA_33: AAA domain; P 97.5 0.00011 2.5E-09 49.4 3.0 20 23-42 2-21 (143)
460 cd00009 AAA The AAA+ (ATPases 97.4 0.0023 5E-08 42.6 9.4 26 19-44 18-43 (151)
461 cd00267 ABC_ATPase ABC (ATP-bi 97.4 0.0038 8.2E-08 42.8 10.5 26 19-44 24-49 (157)
462 COG1117 PstB ABC-type phosphat 97.4 0.00011 2.3E-09 52.5 2.7 23 19-41 32-54 (253)
463 TIGR03574 selen_PSTK L-seryl-t 97.4 0.00061 1.3E-08 50.6 6.9 20 23-42 2-21 (249)
464 PRK11174 cysteine/glutathione 97.4 0.0015 3.3E-08 54.4 9.8 26 19-44 375-400 (588)
465 COG0541 Ffh Signal recognition 97.4 0.0009 2E-08 52.6 7.7 110 18-134 98-252 (451)
466 cd00071 GMPK Guanosine monopho 97.4 0.00022 4.8E-09 47.9 4.0 21 23-43 2-22 (137)
467 KOG0469 Elongation factor 2 [T 97.4 0.001 2.2E-08 53.3 8.0 125 17-146 16-178 (842)
468 COG1120 FepC ABC-type cobalami 97.4 0.00013 2.8E-09 53.9 2.9 24 20-43 28-51 (258)
469 cd02042 ParA ParA and ParB of 97.4 0.0025 5.4E-08 40.4 8.6 81 23-111 2-84 (104)
470 COG4559 ABC-type hemin transpo 97.4 0.00017 3.7E-09 51.5 3.3 24 22-45 29-52 (259)
471 cd03261 ABC_Org_Solvent_Resist 97.4 0.00037 8E-09 51.2 5.3 26 19-44 25-50 (235)
472 TIGR00960 3a0501s02 Type II (G 97.4 0.00035 7.7E-09 50.6 5.1 26 19-44 28-53 (216)
473 COG4619 ABC-type uncharacteriz 97.4 0.0002 4.3E-09 49.4 3.4 25 19-43 28-52 (223)
474 PF13521 AAA_28: AAA domain; P 97.4 0.00011 2.4E-09 50.9 2.3 22 22-43 1-22 (163)
475 COG2884 FtsE Predicted ATPase 97.4 0.00031 6.7E-09 49.3 4.2 23 23-45 31-53 (223)
476 PRK05480 uridine/cytidine kina 97.4 0.00021 4.5E-09 51.6 3.5 26 18-43 4-29 (209)
477 PRK14530 adenylate kinase; Pro 97.3 0.0002 4.4E-09 51.9 3.4 22 20-41 3-24 (215)
478 TIGR00235 udk uridine kinase. 97.3 0.0002 4.4E-09 51.6 3.3 26 18-43 4-29 (207)
479 PRK06217 hypothetical protein; 97.3 0.00019 4.2E-09 50.7 3.2 23 21-43 2-24 (183)
480 cd03238 ABC_UvrA The excision 97.3 0.00019 4.2E-09 50.3 3.1 24 19-42 20-43 (176)
481 cd00820 PEPCK_HprK Phosphoenol 97.3 0.00019 4.2E-09 45.8 2.8 22 20-41 15-36 (107)
482 PRK08233 hypothetical protein; 97.3 0.00023 4.9E-09 50.0 3.4 24 20-43 3-26 (182)
483 COG1161 Predicted GTPases [Gen 97.3 0.00048 1E-08 53.0 5.4 94 70-186 16-110 (322)
484 cd03259 ABC_Carb_Solutes_like 97.3 0.00048 1E-08 49.8 5.2 26 19-44 25-50 (213)
485 cd03111 CpaE_like This protein 97.3 0.0025 5.3E-08 40.8 7.9 95 26-130 6-106 (106)
486 cd02023 UMPK Uridine monophosp 97.3 0.00018 3.8E-09 51.4 2.8 21 23-43 2-22 (198)
487 PRK10078 ribose 1,5-bisphospho 97.3 0.00022 4.7E-09 50.5 3.2 23 22-44 4-26 (186)
488 PRK11629 lolD lipoprotein tran 97.3 0.00054 1.2E-08 50.3 5.3 26 19-44 34-59 (233)
489 PRK09270 nucleoside triphospha 97.3 0.00056 1.2E-08 50.1 5.3 27 16-42 29-55 (229)
490 cd03255 ABC_MJ0796_Lo1CDE_FtsE 97.3 0.00023 4.9E-09 51.7 3.2 26 19-44 29-54 (218)
491 cd03225 ABC_cobalt_CbiO_domain 97.3 0.00024 5.1E-09 51.3 3.2 26 19-44 26-51 (211)
492 COG3845 ABC-type uncharacteriz 97.3 0.0038 8.3E-08 49.9 10.0 22 23-44 33-54 (501)
493 cd03226 ABC_cobalt_CbiO_domain 97.3 0.00024 5.3E-09 51.0 3.2 26 19-44 25-50 (205)
494 cd03264 ABC_drug_resistance_li 97.3 0.00024 5.3E-09 51.2 3.1 25 19-44 25-49 (211)
495 cd02025 PanK Pantothenate kina 97.3 0.0002 4.4E-09 52.1 2.7 20 23-42 2-21 (220)
496 TIGR01166 cbiO cobalt transpor 97.3 0.00026 5.7E-09 50.2 3.2 26 19-44 17-42 (190)
497 TIGR02322 phosphon_PhnN phosph 97.3 0.00023 5E-09 50.0 2.9 22 22-43 3-24 (179)
498 TIGR02673 FtsE cell division A 97.3 0.00026 5.7E-09 51.2 3.2 26 19-44 27-52 (214)
499 PF13238 AAA_18: AAA domain; P 97.3 0.00025 5.5E-09 46.6 2.9 21 23-43 1-21 (129)
500 PF03266 NTPase_1: NTPase; In 97.3 0.00028 6E-09 49.1 3.1 21 22-42 1-21 (168)
No 1
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=100.00 E-value=6.3e-34 Score=202.56 Aligned_cols=190 Identities=70% Similarity=1.198 Sum_probs=157.5
Q ss_pred cHHHHHHHHHHHhCCCCcccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCeEEEEEEcCChhhhHHhH
Q 029453 2 FLVDWFYGILVSLGLWQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMARRVW 81 (193)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~ 81 (193)
+|-+|+++.+..++...++++|+++|++|||||||++++.++.+..+.+|.++....+.+++..+.+||+||+..+...+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~ki~ilG~~~~GKStLi~~l~~~~~~~~~~T~~~~~~~i~~~~~~~~l~D~~G~~~~~~~~ 80 (190)
T cd00879 1 FIFDWFYNVLSSLGLYNKEAKILFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELTIGNIKFKTFDLGGHEQARRLW 80 (190)
T ss_pred ChHHHHHHHHHHhhcccCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCccCcceEEEEECCEEEEEEECCCCHHHHHHH
Confidence 46789999999999999999999999999999999999998887777778888888888889999999999999988888
Q ss_pred HhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCC
Q 029453 82 KDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLD 161 (193)
Q Consensus 82 ~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (193)
..++..++++++|+|+++.+++.....++..++......+.|+++++||+|+.+....+++...++.......+. ....
T Consensus 81 ~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 159 (190)
T cd00879 81 KDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALGLYGTTTGKG-VSLK 159 (190)
T ss_pred HHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCHHHHHHHhCccccccccc-cccc
Confidence 889999999999999999988888888888887655556799999999999987777777877776544221110 1111
Q ss_pred CCCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 162 NTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 162 ~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
......+++++|||++|+|++++|+||.+.+
T Consensus 160 ~~~~~~~~~~~~Sa~~~~gv~e~~~~l~~~~ 190 (190)
T cd00879 160 VSGIRPIEVFMCSVVKRQGYGEAFRWLSQYL 190 (190)
T ss_pred ccCceeEEEEEeEecCCCChHHHHHHHHhhC
Confidence 1122457899999999999999999998764
No 2
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=5.2e-34 Score=201.88 Aligned_cols=183 Identities=80% Similarity=1.334 Sum_probs=154.5
Q ss_pred HHHHHHHHHhCCCCcccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCeEEEEEEcCChhhhHHhHHhh
Q 029453 5 DWFYGILVSLGLWQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMARRVWKDY 84 (193)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~ 84 (193)
|||+.++..++.++++++|+++|++|||||||++++.++.+..+.||.++....+..++..+.+||+||+..+...+..+
T Consensus 2 ~~~~~~~~~~~~~~~~~~i~ivG~~~~GKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~ 81 (184)
T smart00178 2 DWFYDILASLGLWNKHAKILFLGLDNAGKTTLLHMLKNDRLAQHQPTQHPTSEELAIGNIKFTTFDLGGHQQARRLWKDY 81 (184)
T ss_pred hHHHHHHHHhccccccCEEEEECCCCCCHHHHHHHHhcCCCcccCCccccceEEEEECCEEEEEEECCCCHHHHHHHHHH
Confidence 79999888666678999999999999999999999999887766778888888888888999999999999999999999
Q ss_pred hccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCC
Q 029453 85 YAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTN 164 (193)
Q Consensus 85 ~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (193)
+..+|++++|+|+++++++.....++..+++.....+.|+++|+||+|++.....+++...++......... ...
T Consensus 82 ~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l~~~~~~~~-----~~~ 156 (184)
T smart00178 82 FPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGLTNTTGSKG-----KVG 156 (184)
T ss_pred hCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCHHHHHHHcCCCccccccc-----ccC
Confidence 999999999999999988888888888877654446899999999999987778888988887665221100 011
Q ss_pred CccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 165 VRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 165 ~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
.+.+.+++|||++|.|++++++||.+++
T Consensus 157 ~~~~~i~~~Sa~~~~g~~~~~~wl~~~~ 184 (184)
T smart00178 157 VRPLEVFMCSVVRRMGYGEGFKWLSQYI 184 (184)
T ss_pred CceeEEEEeecccCCChHHHHHHHHhhC
Confidence 2567899999999999999999998763
No 3
>PLN00223 ADP-ribosylation factor; Provisional
Probab=100.00 E-value=2.4e-33 Score=197.88 Aligned_cols=165 Identities=32% Similarity=0.586 Sum_probs=141.0
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEE
Q 029453 16 LWQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLI 95 (193)
Q Consensus 16 ~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 95 (193)
..++.+||+++|.+|||||||++++..+.+..+.||.+.+...+.+.+..+.+||+||++++...+..+++++|++|+|+
T Consensus 13 ~~~~~~ki~ivG~~~~GKTsl~~~l~~~~~~~~~pt~g~~~~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V~ 92 (181)
T PLN00223 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
T ss_pred cCCCccEEEEECCCCCCHHHHHHHHccCCCccccCCcceeEEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEE
Confidence 35677999999999999999999999888777778888777777888899999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEee
Q 029453 96 DAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSI 175 (193)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 175 (193)
|+++++++.....++..++......+.|+++++||+|++.....+++...++..... .+.+.++++||
T Consensus 93 D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~l~l~~~~------------~~~~~~~~~Sa 160 (181)
T PLN00223 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR------------QRHWYIQSTCA 160 (181)
T ss_pred eCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCCHHHHHHHhCccccC------------CCceEEEeccC
Confidence 999999999888888888765444679999999999998777777777777765410 13456789999
Q ss_pred ecCCChhHHHHhhhhhc
Q 029453 176 VRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 176 ~~~~gi~~~~~~i~~~l 192 (193)
++|+|++++|+||.+.+
T Consensus 161 ~~g~gv~e~~~~l~~~~ 177 (181)
T PLN00223 161 TSGEGLYEGLDWLSNNI 177 (181)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999999998765
No 4
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=100.00 E-value=1.8e-33 Score=197.42 Aligned_cols=175 Identities=42% Similarity=0.709 Sum_probs=157.6
Q ss_pred HHHHHHHhCCCCcccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCeEEEEEEcCChhhhHHhHHhhhc
Q 029453 7 FYGILVSLGLWQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMARRVWKDYYA 86 (193)
Q Consensus 7 ~~~~~~~~~~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~ 86 (193)
|+++.++.....+++||+++|+.||||||+++++..+......||.+.....+.+.+..+.+||.+|+..++..|+.+++
T Consensus 1 ~~~~~~~~~~~~~~~~ililGl~~sGKTtll~~l~~~~~~~~~pT~g~~~~~i~~~~~~~~~~d~gG~~~~~~~w~~y~~ 80 (175)
T PF00025_consen 1 FSSVLSKLKSKKKEIKILILGLDGSGKTTLLNRLKNGEISETIPTIGFNIEEIKYKGYSLTIWDLGGQESFRPLWKSYFQ 80 (175)
T ss_dssp HHHHHHHCTTTTSEEEEEEEESTTSSHHHHHHHHHSSSEEEEEEESSEEEEEEEETTEEEEEEEESSSGGGGGGGGGGHT
T ss_pred CHHHHHHhcccCcEEEEEEECCCccchHHHHHHhhhccccccCcccccccceeeeCcEEEEEEeccccccccccceeecc
Confidence 45666777677999999999999999999999999888778888999999999999999999999999999999999999
Q ss_pred cCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCc
Q 029453 87 KVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVR 166 (193)
Q Consensus 87 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (193)
++|++|||+|+++.+.+.+....+..++......++|+++++||.|++.....+++...+.+..+. ..+
T Consensus 81 ~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l~~l~-----------~~~ 149 (175)
T PF00025_consen 81 NADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGLEKLK-----------NKR 149 (175)
T ss_dssp TESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTGGGTT-----------SSS
T ss_pred ccceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhhhhcc-----------cCC
Confidence 999999999999999999999999999887666789999999999998888888888888877632 125
Q ss_pred cEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 167 PLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 167 ~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
.+.++.|||.+|+|+.+.++||.+++
T Consensus 150 ~~~v~~~sa~~g~Gv~e~l~WL~~~~ 175 (175)
T PF00025_consen 150 PWSVFSCSAKTGEGVDEGLEWLIEQI 175 (175)
T ss_dssp CEEEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred ceEEEeeeccCCcCHHHHHHHHHhcC
Confidence 68999999999999999999998864
No 5
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=100.00 E-value=1.2e-32 Score=192.26 Aligned_cols=162 Identities=33% Similarity=0.590 Sum_probs=136.0
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEe
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLID 96 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 96 (193)
..+.+||+++|++|||||||++++..+.+..+.||.+.....+...+..+.+||+||++++...+..++..+|++++|+|
T Consensus 6 ~~~~~kv~i~G~~~~GKTsli~~l~~~~~~~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~D 85 (168)
T cd04149 6 GNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVD 85 (168)
T ss_pred CCCccEEEEECcCCCCHHHHHHHHccCCCccccCCcccceEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEe
Confidence 35679999999999999999999988777766777777766677788999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeee
Q 029453 97 AYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIV 176 (193)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 176 (193)
++++.++.....++..++......+.|+++|+||+|+......+++.+.++..... ...+.++++||+
T Consensus 86 ~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~------------~~~~~~~~~SAk 153 (168)
T cd04149 86 SADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLGLTRIR------------DRNWYVQPSCAT 153 (168)
T ss_pred CCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCCCHHHHHHHcCCCccC------------CCcEEEEEeeCC
Confidence 99998899988888888765444578999999999997656667777766544310 133578999999
Q ss_pred cCCChhHHHHhhhh
Q 029453 177 RKMGYGEGFKWLSQ 190 (193)
Q Consensus 177 ~~~gi~~~~~~i~~ 190 (193)
+|.|++++|+||.+
T Consensus 154 ~g~gv~~~~~~l~~ 167 (168)
T cd04149 154 SGDGLYEGLTWLSS 167 (168)
T ss_pred CCCChHHHHHHHhc
Confidence 99999999999975
No 6
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=100.00 E-value=3.5e-32 Score=192.15 Aligned_cols=164 Identities=34% Similarity=0.626 Sum_probs=137.9
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEe
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLID 96 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 96 (193)
..+++||+++|++|||||||++++..+.+..+.||.+.....+...+..+.+||+||++.+...+..+++.+|++|+|+|
T Consensus 14 ~~~~~kv~lvG~~~vGKTsli~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v~D 93 (182)
T PTZ00133 14 GKKEVRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVVD 93 (182)
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccccCCccccceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEe
Confidence 45679999999999999999999988877766778777777777888999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeee
Q 029453 97 AYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIV 176 (193)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 176 (193)
+++++++.....++..++......++|+++|+||.|+......+++...++...+. .+.+.++++||+
T Consensus 94 ~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~l~~~~~~------------~~~~~~~~~Sa~ 161 (182)
T PTZ00133 94 SNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMSTTEVTEKLGLHSVR------------QRNWYIQGCCAT 161 (182)
T ss_pred CCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCHHHHHHHhCCCccc------------CCcEEEEeeeCC
Confidence 99999999888888888655444578999999999997666666777776654311 134678899999
Q ss_pred cCCChhHHHHhhhhhc
Q 029453 177 RKMGYGEGFKWLSQYI 192 (193)
Q Consensus 177 ~~~gi~~~~~~i~~~l 192 (193)
+|.|++++|+||.+.+
T Consensus 162 tg~gv~e~~~~l~~~i 177 (182)
T PTZ00133 162 TAQGLYEGLDWLSANI 177 (182)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999998764
No 7
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=100.00 E-value=2.3e-32 Score=192.05 Aligned_cols=163 Identities=32% Similarity=0.583 Sum_probs=137.4
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeC
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDA 97 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 97 (193)
++.+||+++|.+|||||||++++..+.+..+.||.+.......+.+..+.+||+||++.+...+..+++++|++|+|+|+
T Consensus 11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v~D~ 90 (175)
T smart00177 11 NKEMRILMVGLDAAGKTTILYKLKLGESVTTIPTIGFNVETVTYKNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVVDS 90 (175)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCCCcCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEEC
Confidence 56799999999999999999999877776666777776666777889999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeeec
Q 029453 98 YDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVR 177 (193)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 177 (193)
++++++.....++..+++.....+.|+++|+||+|+......+++...++..... .+.+.++++||++
T Consensus 91 t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~------------~~~~~~~~~Sa~~ 158 (175)
T smart00177 91 NDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKAAEITEKLGLHSIR------------DRNWYIQPTCATS 158 (175)
T ss_pred CCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCCHHHHHHHhCccccC------------CCcEEEEEeeCCC
Confidence 9999999999898888765444679999999999997666666777766644310 1346788999999
Q ss_pred CCChhHHHHhhhhhc
Q 029453 178 KMGYGEGFKWLSQYI 192 (193)
Q Consensus 178 ~~gi~~~~~~i~~~l 192 (193)
|.|++++|+||.+.+
T Consensus 159 g~gv~e~~~~l~~~~ 173 (175)
T smart00177 159 GDGLYEGLTWLSNNL 173 (175)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999998764
No 8
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=100.00 E-value=4.4e-32 Score=187.82 Aligned_cols=158 Identities=32% Similarity=0.600 Sum_probs=131.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCCh
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDK 100 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~ 100 (193)
+||+++|.+|||||||++++..+.+..+.||.+.....+......+.+||+||++++...+..+++.+|++++|+|+++.
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~~~~pt~g~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~~ 80 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 80 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCcccCCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCH
Confidence 48999999999999999999887777667777777667778889999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeeecCCC
Q 029453 101 ERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMG 180 (193)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 180 (193)
.++.....++..++......+.|+++++||+|+......+++...+....+. .+.+.++++||++|.|
T Consensus 81 ~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~------------~~~~~~~~~Sak~g~g 148 (159)
T cd04150 81 ERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAAEVTDKLGLHSLR------------NRNWYIQATCATSGDG 148 (159)
T ss_pred HHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCCHHHHHHHhCccccC------------CCCEEEEEeeCCCCCC
Confidence 9999998888888765444568999999999997555555665555433210 1345789999999999
Q ss_pred hhHHHHhhhh
Q 029453 181 YGEGFKWLSQ 190 (193)
Q Consensus 181 i~~~~~~i~~ 190 (193)
++++|+||.+
T Consensus 149 v~~~~~~l~~ 158 (159)
T cd04150 149 LYEGLDWLSN 158 (159)
T ss_pred HHHHHHHHhc
Confidence 9999999964
No 9
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=100.00 E-value=5.6e-32 Score=189.80 Aligned_cols=167 Identities=36% Similarity=0.600 Sum_probs=138.2
Q ss_pred HHhCCCCcccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCeEEEEEEcCChhhhHHhHHhhhccCCEE
Q 029453 12 VSLGLWQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAV 91 (193)
Q Consensus 12 ~~~~~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~i 91 (193)
.......+.++|+++|++|||||||++++.+.......+|.+.....+.+++..+.+||+||++.+...+..++..+|++
T Consensus 6 ~~~~~~~~~~kv~ivG~~~~GKTsL~~~l~~~~~~~~~~t~g~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~ 85 (173)
T cd04154 6 RKQKLKEREMRILILGLDNAGKTTILKKLLGEDIDTISPTLGFQIKTLEYEGYKLNIWDVGGQKTLRPYWRNYFESTDAL 85 (173)
T ss_pred hhhhcCCCccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEE
Confidence 34455667899999999999999999999988766666777766777778889999999999999888888899999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEE
Q 029453 92 VYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVF 171 (193)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (193)
++|+|++++.++.....++..++......+.|+++|+||+|+.+....+++...+..... ....++++
T Consensus 86 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~------------~~~~~~~~ 153 (173)
T cd04154 86 IWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALSEEEIREALELDKI------------SSHHWRIQ 153 (173)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCCCHHHHHHHhCcccc------------CCCceEEE
Confidence 999999999889888888888876544568999999999999765566666655544321 01347899
Q ss_pred EEeeecCCChhHHHHhhhh
Q 029453 172 MCSIVRKMGYGEGFKWLSQ 190 (193)
Q Consensus 172 ~~Sa~~~~gi~~~~~~i~~ 190 (193)
++||++|.|++++|+||.+
T Consensus 154 ~~Sa~~g~gi~~l~~~l~~ 172 (173)
T cd04154 154 PCSAVTGEGLLQGIDWLVD 172 (173)
T ss_pred eccCCCCcCHHHHHHHHhc
Confidence 9999999999999999875
No 10
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=100.00 E-value=3e-31 Score=186.26 Aligned_cols=162 Identities=34% Similarity=0.590 Sum_probs=136.5
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeC
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDA 97 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 97 (193)
.+.++|+++|++|||||||++++..+.+....+|.+.....+.+.+..+.+||+||++.+...+..+++.+|++++|+|+
T Consensus 13 ~~~~kv~~~G~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~D~ 92 (174)
T cd04153 13 RKEYKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSNVEEIVYKNIRFLMWDIGGQESLRSSWNTYYTNTDAVILVIDS 92 (174)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceEEEEECCeEEEEEECCCCHHHHHHHHHHhhcCCEEEEEEEC
Confidence 35789999999999999999999988887777788877778888889999999999999998899999999999999999
Q ss_pred CChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeeec
Q 029453 98 YDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVR 177 (193)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 177 (193)
++++++.....++..+++.....+.|+++++||+|+......+++.+.++..... ...++++++||++
T Consensus 93 s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~~~~i~~~l~~~~~~------------~~~~~~~~~SA~~ 160 (174)
T cd04153 93 TDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPAEISESLGLTSIR------------DHTWHIQGCCALT 160 (174)
T ss_pred CCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCCHHHHHHHhCccccc------------CCceEEEecccCC
Confidence 9998888888888888765444679999999999997655666666666544311 0346899999999
Q ss_pred CCChhHHHHhhhhh
Q 029453 178 KMGYGEGFKWLSQY 191 (193)
Q Consensus 178 ~~gi~~~~~~i~~~ 191 (193)
|.|++++++||.++
T Consensus 161 g~gi~e~~~~l~~~ 174 (174)
T cd04153 161 GEGLPEGLDWIASR 174 (174)
T ss_pred CCCHHHHHHHHhcC
Confidence 99999999999763
No 11
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=100.00 E-value=1.6e-31 Score=186.85 Aligned_cols=160 Identities=35% Similarity=0.599 Sum_probs=133.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCChh
Q 029453 22 KILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKE 101 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~ 101 (193)
||+++|.+|||||||++++.+..+..+.+|.+.....+.+.+..+.+||+||+.++...+..++..+|++++|+|+++++
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~~~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~~~ 80 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRD 80 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCCcCCcCceeEEEEEECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeCCcHH
Confidence 68999999999999999999987766777877777777888899999999999999888889999999999999999999
Q ss_pred hHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeeecCCCh
Q 029453 102 RFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGY 181 (193)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 181 (193)
++.....++..+++.....+.|+++|+||+|+.+..+.+++...+...... ....+.++++||++|.|+
T Consensus 81 s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~Sa~~g~gv 149 (169)
T cd04158 81 RVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEMTELLSLHKLC-----------CGRSWYIQGCDARSGMGL 149 (169)
T ss_pred HHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCCCHHHHHHHhCCcccc-----------CCCcEEEEeCcCCCCCCH
Confidence 999999999998765444568999999999997666666665555332200 012357889999999999
Q ss_pred hHHHHhhhhhc
Q 029453 182 GEGFKWLSQYI 192 (193)
Q Consensus 182 ~~~~~~i~~~l 192 (193)
+++|+||.+.+
T Consensus 150 ~~~f~~l~~~~ 160 (169)
T cd04158 150 YEGLDWLSRQL 160 (169)
T ss_pred HHHHHHHHHHH
Confidence 99999998754
No 12
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=100.00 E-value=3.8e-31 Score=184.53 Aligned_cols=161 Identities=32% Similarity=0.499 Sum_probs=135.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCChh
Q 029453 22 KILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKE 101 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~ 101 (193)
+|+++|++|||||||++++.+.....+.+|.+.....+...+..+.+||+||++++...+..++.++|++++|+|+++..
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~~~~~~~t~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~~ 80 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEIPKKVAPTVGFTPTKLRLDKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDDD 80 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCCccccCcccceEEEEEECCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEECCchh
Confidence 48999999999999999999774445677877777788888999999999999999999999999999999999999998
Q ss_pred hHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeeecC---
Q 029453 102 RFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRK--- 178 (193)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~--- 178 (193)
++.....++..+.+.....++|+++|+||+|+....+..++.+.+....+. ......+.+++|||++|
T Consensus 81 s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~---------~~~~~~~~~~~~Sa~~g~~~ 151 (167)
T cd04161 81 RVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLV---------NENKSLCHIEPCSAIEGLGK 151 (167)
T ss_pred HHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCccccc---------CCCCceEEEEEeEceeCCCC
Confidence 999999999988765444689999999999998777777777777655421 11124578999999998
Q ss_pred ---CChhHHHHhhhhh
Q 029453 179 ---MGYGEGFKWLSQY 191 (193)
Q Consensus 179 ---~gi~~~~~~i~~~ 191 (193)
.|+.+.|+||.++
T Consensus 152 ~~~~g~~~~~~wl~~~ 167 (167)
T cd04161 152 KIDPSIVEGLRWLLAA 167 (167)
T ss_pred ccccCHHHHHHHHhcC
Confidence 8999999999753
No 13
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.98 E-value=1.5e-30 Score=180.03 Aligned_cols=157 Identities=38% Similarity=0.681 Sum_probs=127.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCChh
Q 029453 22 KILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKE 101 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~ 101 (193)
||+++|++|||||||++++..+.+..+.+|.+.....+.+.+..+.+|||||++.+...+..+++.+|++++|+|++++.
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~ 80 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRD 80 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcCcCCccCcCeEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEECCCHH
Confidence 68999999999999999998877766667777666677778899999999999999999999999999999999999988
Q ss_pred hHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeeecCCCh
Q 029453 102 RFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGY 181 (193)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 181 (193)
++.....++..+++.....+.|+++|+||+|+.+.....++...+....+. ....+++++||++|.|+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~i~~~~~~~~~~------------~~~~~~~~~Sa~~~~gi 148 (158)
T cd04151 81 RLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSEAEISEKLGLSELK------------DRTWSIFKTSAIKGEGL 148 (158)
T ss_pred HHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCHHHHHHHhCccccC------------CCcEEEEEeeccCCCCH
Confidence 777777777766654444579999999999997655555555555433210 02357999999999999
Q ss_pred hHHHHhhhh
Q 029453 182 GEGFKWLSQ 190 (193)
Q Consensus 182 ~~~~~~i~~ 190 (193)
+++|++|.+
T Consensus 149 ~~l~~~l~~ 157 (158)
T cd04151 149 DEGMDWLVN 157 (158)
T ss_pred HHHHHHHhc
Confidence 999999975
No 14
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=1.8e-31 Score=177.10 Aligned_cols=193 Identities=78% Similarity=1.280 Sum_probs=181.5
Q ss_pred CcHHHHHHHHHHHhCCCCcccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCeEEEEEEcCChhhhHHh
Q 029453 1 MFLVDWFYGILVSLGLWQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMARRV 80 (193)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~ 80 (193)
||+.+||+.++..+.++++.-|++++|--|||||||++.+..++.....||-.|+.+.+.+++..+...|.+||...++.
T Consensus 1 ~fl~ewF~~VLq~LgL~kK~gKllFlGLDNAGKTTLLHMLKdDrl~qhvPTlHPTSE~l~Ig~m~ftt~DLGGH~qArr~ 80 (193)
T KOG0077|consen 1 SFLFEWFSSVLQFLGLYKKFGKLLFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELSIGGMTFTTFDLGGHLQARRV 80 (193)
T ss_pred CcHHHHHHHHHHHHHHhccCceEEEEeecCCchhhHHHHHccccccccCCCcCCChHHheecCceEEEEccccHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccC
Q 029453 81 WKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNL 160 (193)
Q Consensus 81 ~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (193)
|..|+..+|++++++|+.+.+++.+....++.++......+.|+++.+||+|.+.+...++++..+++..+.+.++..+.
T Consensus 81 wkdyf~~v~~iv~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~se~~l~~~l~l~~~t~~~~~v~~ 160 (193)
T KOG0077|consen 81 WKDYFPQVDAIVYLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAASEDELRFHLGLSNFTTGKGKVNL 160 (193)
T ss_pred HHHHHhhhceeEeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcccHHHHHHHHHHHHHhcccccccc
Confidence 99999999999999999999999999999999998877789999999999999999999999999999998877776666
Q ss_pred CCCCCccEEEEEEeeecCCChhHHHHhhhhhcC
Q 029453 161 DNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYIK 193 (193)
Q Consensus 161 ~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l~ 193 (193)
.....+...+++||...+.|.-+.|.|+.+++.
T Consensus 161 ~~~~~rp~evfmcsi~~~~gy~e~fkwl~qyi~ 193 (193)
T KOG0077|consen 161 TDSNVRPLEVFMCSIVRKMGYGEGFKWLSQYIK 193 (193)
T ss_pred cCCCCCeEEEEEEEEEccCccceeeeehhhhcC
Confidence 667778899999999999999999999988763
No 15
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.98 E-value=3.2e-30 Score=182.37 Aligned_cols=163 Identities=33% Similarity=0.529 Sum_probs=128.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEe-----CCeEEEEEEcCChhhhHHhHHhhhccCCEEEE
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSI-----GKIKFKAFDLGGHQMARRVWKDYYAKVDAVVY 93 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~-----~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 93 (193)
+.+||+++|.+|||||||++++..+.+....+|.+........ .+..+.+|||||++.+...+..+++.+|++++
T Consensus 2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 81 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVF 81 (183)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcCCcCCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEE
Confidence 4689999999999999999999988877666666655444333 35789999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEE
Q 029453 94 LIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMC 173 (193)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (193)
|+|+++++++.....++..+.......+.|+++|+||+|+......+++...++..... ....++++++
T Consensus 82 v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~ 150 (183)
T cd04152 82 VVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALSVSEVEKLLALHELS-----------ASTPWHVQPA 150 (183)
T ss_pred EEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccCCHHHHHHHhCccccC-----------CCCceEEEEe
Confidence 99999998888888887777654444679999999999997655555555444422210 0123678999
Q ss_pred eeecCCChhHHHHhhhhhc
Q 029453 174 SIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 174 Sa~~~~gi~~~~~~i~~~l 192 (193)
||++|.|+++++++|.+.+
T Consensus 151 SA~~~~gi~~l~~~l~~~l 169 (183)
T cd04152 151 CAIIGEGLQEGLEKLYEMI 169 (183)
T ss_pred ecccCCCHHHHHHHHHHHH
Confidence 9999999999999998754
No 16
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.98 E-value=1.9e-30 Score=171.91 Aligned_cols=173 Identities=34% Similarity=0.566 Sum_probs=154.5
Q ss_pred HHHHHhCCCCcccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCeEEEEEEcCChhhhHHhHHhhhccC
Q 029453 9 GILVSLGLWQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMARRVWKDYYAKV 88 (193)
Q Consensus 9 ~~~~~~~~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~ 88 (193)
+...++...+++++|.++|..||||||+++++.+.......||.+.+..+..+++..+.+||.+||...++.|..|+...
T Consensus 5 silrk~k~kerE~riLiLGLdNsGKTti~~kl~~~~~~~i~pt~gf~Iktl~~~~~~L~iwDvGGq~~lr~~W~nYfest 84 (185)
T KOG0073|consen 5 SILRKQKLKEREVRILILGLDNSGKTTIVKKLLGEDTDTISPTLGFQIKTLEYKGYTLNIWDVGGQKTLRSYWKNYFEST 84 (185)
T ss_pred HHHHHHHhhhheeEEEEEecCCCCchhHHHHhcCCCccccCCccceeeEEEEecceEEEEEEcCCcchhHHHHHHhhhcc
Confidence 34456666778999999999999999999999999988899999999999999999999999999999999999999999
Q ss_pred CEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccE
Q 029453 89 DAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPL 168 (193)
Q Consensus 89 d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (193)
|++|+|+|.+++.++++-...+..++......+.|++++.||.|++.+...+++...+++..+. ....+
T Consensus 85 dglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~-----------ks~~~ 153 (185)
T KOG0073|consen 85 DGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELA-----------KSHHW 153 (185)
T ss_pred CeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhc-----------cccCc
Confidence 9999999999999999999999999887777889999999999999888888887777665521 11458
Q ss_pred EEEEEeeecCCChhHHHHhhhhhc
Q 029453 169 EVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 169 ~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
+++.||+.+|+++.+.++||.+.+
T Consensus 154 ~l~~cs~~tge~l~~gidWL~~~l 177 (185)
T KOG0073|consen 154 RLVKCSAVTGEDLLEGIDWLCDDL 177 (185)
T ss_pred eEEEEeccccccHHHHHHHHHHHH
Confidence 999999999999999999998754
No 17
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.97 E-value=3.5e-30 Score=178.37 Aligned_cols=158 Identities=36% Similarity=0.619 Sum_probs=128.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeC-CeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCCh
Q 029453 22 KILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIG-KIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDK 100 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~ 100 (193)
+|+++|++|||||||++++.++.+....+|.+.....+... ...+.+||+||++.+...+..++..+|++++|+|++++
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~ 80 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTTIPTVGFNVEMLQLEKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDE 80 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccccCccCcceEEEEeCCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCcH
Confidence 58999999999999999999998876677776665555553 47899999999999988888899999999999999999
Q ss_pred hhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeeecCCC
Q 029453 101 ERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMG 180 (193)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 180 (193)
.++.....++..+++.....+.|+++|+||+|+......+++...++...+. ....+++++|||++|+|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~-----------~~~~~~~~~~Sa~~~~g 149 (160)
T cd04156 81 ARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRRFKLKKYC-----------SDRDWYVQPCSAVTGEG 149 (160)
T ss_pred HHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcCHHHHHHHcCCcccC-----------CCCcEEEEecccccCCC
Confidence 8888888888888765444689999999999997555566666555433211 01346799999999999
Q ss_pred hhHHHHhhhh
Q 029453 181 YGEGFKWLSQ 190 (193)
Q Consensus 181 i~~~~~~i~~ 190 (193)
++++|++|.+
T Consensus 150 v~~~~~~i~~ 159 (160)
T cd04156 150 LAEAFRKLAS 159 (160)
T ss_pred hHHHHHHHhc
Confidence 9999999865
No 18
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.97 E-value=5.6e-30 Score=177.60 Aligned_cols=158 Identities=34% Similarity=0.624 Sum_probs=126.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCc-c-ccCCCCCcceeEEEeCCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCC
Q 029453 22 KILFLGLDNSGKTTLLHMLKDERL-V-QHQPTQYPTSEELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYD 99 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~~~-~-~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~ 99 (193)
+|+++|++|||||||++++.+... . ...+|.+.....+...+..+.+|||||++++...+..+++.+|++++|+|+++
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~ 80 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVESFEKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSD 80 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEEEEECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEeCCc
Confidence 589999999999999999998753 2 45567776666667788899999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhCCC--CCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeeec
Q 029453 100 KERFSESKRELDALLSDEA--LADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVR 177 (193)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~--~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 177 (193)
+.++.....++..+.+... ..++|+++|+||+|+.+.....++...++.... ....+.++++||++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~~~------------~~~~~~~~~~Sa~~ 148 (162)
T cd04157 81 RLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAVKITQLLGLENI------------KDKPWHIFASNALT 148 (162)
T ss_pred HHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCHHHHHHHhCCccc------------cCceEEEEEeeCCC
Confidence 9888888888877765432 257999999999999765555555555543321 01235799999999
Q ss_pred CCChhHHHHhhhhh
Q 029453 178 KMGYGEGFKWLSQY 191 (193)
Q Consensus 178 ~~gi~~~~~~i~~~ 191 (193)
|.|++++|+||.++
T Consensus 149 g~gv~~~~~~l~~~ 162 (162)
T cd04157 149 GEGLDEGVQWLQAQ 162 (162)
T ss_pred CCchHHHHHHHhcC
Confidence 99999999999764
No 19
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.97 E-value=7.5e-30 Score=177.89 Aligned_cols=160 Identities=39% Similarity=0.620 Sum_probs=128.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCc-------cccCCCCCcceeEEEeCCeEEEEEEcCChhhhHHhHHhhhccCCEEEEE
Q 029453 22 KILFLGLDNSGKTTLLHMLKDERL-------VQHQPTQYPTSEELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYL 94 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~~~-------~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 94 (193)
+|+++|++|||||||++++.+... ....+|.+.....+.+++..+.+||+||++.+...+..++..+|++++|
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~v 80 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQESLRSLWDKYYAECHAIIYV 80 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEE
Confidence 589999999999999999975432 1234566667777888899999999999999998888999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEe
Q 029453 95 IDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCS 174 (193)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 174 (193)
+|+++++++.....++..+.+.....+.|+++++||+|+.+.....+....+...... .....++++++|
T Consensus 81 vd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~S 150 (167)
T cd04160 81 IDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALSVEEIKEVFQDKAEE----------IGRRDCLVLPVS 150 (167)
T ss_pred EECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCCCHHHHHHHhcccccc----------ccCCceEEEEee
Confidence 9999988888888888888765555689999999999997766656655554433200 011346899999
Q ss_pred eecCCChhHHHHhhhhh
Q 029453 175 IVRKMGYGEGFKWLSQY 191 (193)
Q Consensus 175 a~~~~gi~~~~~~i~~~ 191 (193)
|++|.|++++++||.++
T Consensus 151 a~~g~gv~e~~~~l~~~ 167 (167)
T cd04160 151 ALEGTGVREGIEWLVER 167 (167)
T ss_pred CCCCcCHHHHHHHHhcC
Confidence 99999999999999764
No 20
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.97 E-value=1.2e-29 Score=175.30 Aligned_cols=158 Identities=39% Similarity=0.659 Sum_probs=135.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCChh
Q 029453 22 KILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKE 101 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~ 101 (193)
||+++|.+|||||||++++.+.......+|.+.....+.+....+.+||+||++.+...+..+++.+|++++|+|+++++
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~~ 80 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSSDRE 80 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcCcceEEEEECCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEECCCHH
Confidence 68999999999999999999998666777888777788888899999999999999989999999999999999999999
Q ss_pred hHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeeecCCCh
Q 029453 102 RFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGY 181 (193)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 181 (193)
++.....++..+.......+.|+++++||+|+......+++...++.... ....++++++||++|.|+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~Sa~~~~gv 148 (158)
T cd00878 81 RIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSVSELIEKLGLEKI------------LGRRWHIQPCSAVTGDGL 148 (158)
T ss_pred HHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccCHHHHHHhhChhhc------------cCCcEEEEEeeCCCCCCH
Confidence 89998888888876555568999999999999866666666666554420 114578999999999999
Q ss_pred hHHHHhhhhh
Q 029453 182 GEGFKWLSQY 191 (193)
Q Consensus 182 ~~~~~~i~~~ 191 (193)
+++|++|.++
T Consensus 149 ~~~~~~l~~~ 158 (158)
T cd00878 149 DEGLDWLLQQ 158 (158)
T ss_pred HHHHHHHhhC
Confidence 9999999753
No 21
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.97 E-value=2e-29 Score=176.75 Aligned_cols=164 Identities=35% Similarity=0.621 Sum_probs=135.5
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEE
Q 029453 16 LWQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLI 95 (193)
Q Consensus 16 ~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 95 (193)
...+.++|+++|++|||||||++++.+..+....+|.+.....+...+..+.+||+||+..+...+..+++.+|++++|+
T Consensus 10 ~~~~~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~~~~i~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 89 (173)
T cd04155 10 KSSEEPRILILGLDNAGKTTILKQLASEDISHITPTQGFNIKTVQSDGFKLNVWDIGGQRAIRPYWRNYFENTDCLIYVI 89 (173)
T ss_pred ccCCccEEEEEccCCCCHHHHHHHHhcCCCcccCCCCCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEE
Confidence 34568999999999999999999999887766667777777777888899999999999988888888899999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEee
Q 029453 96 DAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSI 175 (193)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 175 (193)
|+++..++.....++..+.......++|+++++||+|+......+++.+.++..... .+.+.++++||
T Consensus 90 D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~i~~~l~~~~~~------------~~~~~~~~~Sa 157 (173)
T cd04155 90 DSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPAEEIAEALNLHDLR------------DRTWHIQACSA 157 (173)
T ss_pred eCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCHHHHHHHcCCcccC------------CCeEEEEEeEC
Confidence 999988888878777777655444679999999999997666666777666554311 13467899999
Q ss_pred ecCCChhHHHHhhhhh
Q 029453 176 VRKMGYGEGFKWLSQY 191 (193)
Q Consensus 176 ~~~~gi~~~~~~i~~~ 191 (193)
++|+|++++++||.++
T Consensus 158 ~~~~gi~~~~~~l~~~ 173 (173)
T cd04155 158 KTGEGLQEGMNWVCKN 173 (173)
T ss_pred CCCCCHHHHHHHHhcC
Confidence 9999999999999763
No 22
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2.7e-30 Score=176.52 Aligned_cols=161 Identities=22% Similarity=0.311 Sum_probs=129.1
Q ss_pred CCCCcccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce--eEEEeC--CeEEEEEEcCChhhhHHhHHhhhccCC
Q 029453 15 GLWQKEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPTS--EELSIG--KIKFKAFDLGGHQMARRVWKDYYAKVD 89 (193)
Q Consensus 15 ~~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d 89 (193)
+...+.+||.++|.+|+|||+|+.++..+.+.. +..|.+... ..+.+. ...+.+|||+||++|+.....++++++
T Consensus 4 ~~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ah 83 (205)
T KOG0084|consen 4 PEYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAH 83 (205)
T ss_pred cccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCC
Confidence 446788999999999999999999999999884 455666543 344444 468999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC--CCCCHHHHHHhhCCCccccCCCcccCCCCCCcc
Q 029453 90 AVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIP--YAASEDELRYHMGLTNFTTGKGNVNLDNTNVRP 167 (193)
Q Consensus 90 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (193)
++|+|+|+++.++|..+..|+.++- .....+.|.++|+||+|+. +....++.+....... .
T Consensus 84 Gii~vyDiT~~~SF~~v~~Wi~Ei~-~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~----------------~ 146 (205)
T KOG0084|consen 84 GIIFVYDITKQESFNNVKRWIQEID-RYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELG----------------I 146 (205)
T ss_pred eEEEEEEcccHHHhhhHHHHHHHhh-hhccCCCCeEEEeeccccHhheecCHHHHHHHHHhcC----------------C
Confidence 9999999999999999999999995 4555778999999999997 3344443322211111 1
Q ss_pred EEEEEEeeecCCChhHHHHhhhhhc
Q 029453 168 LEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 168 ~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
..++++||+++.|+++.|..|...+
T Consensus 147 ~~f~ETSAK~~~NVe~~F~~la~~l 171 (205)
T KOG0084|consen 147 PIFLETSAKDSTNVEDAFLTLAKEL 171 (205)
T ss_pred cceeecccCCccCHHHHHHHHHHHH
Confidence 1279999999999999999987654
No 23
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=3e-30 Score=175.71 Aligned_cols=157 Identities=21% Similarity=0.336 Sum_probs=130.4
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCcccc-CCCCCcce--eEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEE
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQH-QPTQYPTS--EELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVV 92 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~-~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 92 (193)
...+|++++|..++|||||+-|+..+.+... .+|.+... ..+..++ ..+.+|||+|+++|.++-+.|+++++++|
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi 82 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI 82 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence 4678999999999999999999999999874 67776543 3444444 78889999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhCCCccccCCCcccCCCCCCccEEE
Q 029453 93 YLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY--AASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEV 170 (193)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (193)
+|+|+++.++|..+..|..++.+... +++-+.+|+||+||.. ..+.++....-...- ..+
T Consensus 83 vvYDit~~~SF~~aK~WvkeL~~~~~-~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~g-----------------ll~ 144 (200)
T KOG0092|consen 83 VVYDITDEESFEKAKNWVKELQRQAS-PNIVIALVGNKADLLERREVEFEEAQAYAESQG-----------------LLF 144 (200)
T ss_pred EEEecccHHHHHHHHHHHHHHHhhCC-CCeEEEEecchhhhhhcccccHHHHHHHHHhcC-----------------CEE
Confidence 99999999999999999999976543 6777888999999973 555555433333222 477
Q ss_pred EEEeeecCCChhHHHHhhhhhc
Q 029453 171 FMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 171 ~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
+++|||+|+|++++|..|.+.+
T Consensus 145 ~ETSAKTg~Nv~~if~~Ia~~l 166 (200)
T KOG0092|consen 145 FETSAKTGENVNEIFQAIAEKL 166 (200)
T ss_pred EEEecccccCHHHHHHHHHHhc
Confidence 9999999999999999998765
No 24
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.97 E-value=1.7e-29 Score=178.94 Aligned_cols=157 Identities=15% Similarity=0.291 Sum_probs=123.8
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCcccc-CCCCCcc--eeEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEE
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQH-QPTQYPT--SEELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAV 91 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~-~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~i 91 (193)
....+||+++|..|||||||++++..+.+... .++.+.. ...+..++ ..+.+||++|++.+..++..+++.+|++
T Consensus 3 ~~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~i 82 (189)
T cd04121 3 YDYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGI 82 (189)
T ss_pred CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEE
Confidence 34568999999999999999999998877643 3344332 23444554 6789999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhCCCccccCCCcccCCCCCCccEE
Q 029453 92 VYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY--AASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLE 169 (193)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (193)
++|+|+++++++..+..|+..+.... ++.|+++|+||+|+.. ..+.++....... ..+.
T Consensus 83 llVfD~t~~~Sf~~~~~w~~~i~~~~--~~~piilVGNK~DL~~~~~v~~~~~~~~a~~-----------------~~~~ 143 (189)
T cd04121 83 ILVYDITNRWSFDGIDRWIKEIDEHA--PGVPKILVGNRLHLAFKRQVATEQAQAYAER-----------------NGMT 143 (189)
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECccchhccCCCHHHHHHHHHH-----------------cCCE
Confidence 99999999999999999999985532 5899999999999963 3344333222211 2257
Q ss_pred EEEEeeecCCChhHHHHhhhhhc
Q 029453 170 VFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 170 ~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
+++|||++|.|++++|++|.+.+
T Consensus 144 ~~e~SAk~g~~V~~~F~~l~~~i 166 (189)
T cd04121 144 FFEVSPLCNFNITESFTELARIV 166 (189)
T ss_pred EEEecCCCCCCHHHHHHHHHHHH
Confidence 89999999999999999998643
No 25
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.97 E-value=9.4e-30 Score=181.85 Aligned_cols=155 Identities=18% Similarity=0.297 Sum_probs=120.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc--eeEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEEEEE
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPT--SEELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVVYLI 95 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 95 (193)
+.|+++|.+|||||||++++..+.+.. +.+|.+.. ...+.+++ ..+.+|||+|++++..++..+++++|++|+|+
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 368999999999999999999988864 34455433 34455655 77899999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEE
Q 029453 96 DAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY--AASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMC 173 (193)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (193)
|++++++++.+..|+..+. .....+.|+++|+||+|+.. ....++.. .+.... ..+.++++
T Consensus 81 Dvtd~~Sf~~l~~w~~~i~-~~~~~~~piilVgNK~DL~~~~~v~~~~~~-~~a~~~---------------~~~~~~et 143 (202)
T cd04120 81 DITKKETFDDLPKWMKMID-KYASEDAELLLVGNKLDCETDREISRQQGE-KFAQQI---------------TGMRFCEA 143 (202)
T ss_pred ECcCHHHHHHHHHHHHHHH-HhCCCCCcEEEEEECcccccccccCHHHHH-HHHHhc---------------CCCEEEEe
Confidence 9999999999988887654 33446799999999999963 22222221 111110 12478999
Q ss_pred eeecCCChhHHHHhhhhhc
Q 029453 174 SIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 174 Sa~~~~gi~~~~~~i~~~l 192 (193)
||++|.|++++|++|.+.+
T Consensus 144 SAktg~gV~e~F~~l~~~~ 162 (202)
T cd04120 144 SAKDNFNVDEIFLKLVDDI 162 (202)
T ss_pred cCCCCCCHHHHHHHHHHHH
Confidence 9999999999999998653
No 26
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.97 E-value=1.7e-29 Score=176.98 Aligned_cols=157 Identities=19% Similarity=0.274 Sum_probs=121.2
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce-eEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEEEE
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPTS-EELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVVYL 94 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 94 (193)
+.+||+++|.+|||||||++++..+.+.. +.+|.+... ..+..++ ..+.+|||||++.+..++..++..+|++++|
T Consensus 1 ~~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv 80 (172)
T cd04141 1 REYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC 80 (172)
T ss_pred CceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence 35799999999999999999999988863 445554333 2344444 6789999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC--CCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEE
Q 029453 95 IDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYA--ASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFM 172 (193)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (193)
+|++++.++.....|+..+.......+.|+++|+||+|+... .+.++..... .. ..+++++
T Consensus 81 ~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a-~~----------------~~~~~~e 143 (172)
T cd04141 81 YSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLA-RE----------------FNCPFFE 143 (172)
T ss_pred EECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHH-HH----------------hCCEEEE
Confidence 999999999998887766654333467999999999998632 2222221111 00 2257899
Q ss_pred EeeecCCChhHHHHhhhhhc
Q 029453 173 CSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 173 ~Sa~~~~gi~~~~~~i~~~l 192 (193)
|||++|.|++++|++|.+.+
T Consensus 144 ~Sa~~~~~v~~~f~~l~~~~ 163 (172)
T cd04141 144 TSAALRHYIDDAFHGLVREI 163 (172)
T ss_pred EecCCCCCHHHHHHHHHHHH
Confidence 99999999999999998653
No 27
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.97 E-value=1.7e-29 Score=175.71 Aligned_cols=156 Identities=19% Similarity=0.265 Sum_probs=122.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc-eeEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEEEEE
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPT-SEELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVVYLI 95 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~-~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 95 (193)
++||+++|.+|||||||++++..+.+.. ..+|.+.. ...+..++ ..+.+|||||++.+...+..+++.+|++++|+
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVY 80 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEE
Confidence 4799999999999999999999887654 33444432 23445553 56779999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCC--CHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEE
Q 029453 96 DAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAA--SEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMC 173 (193)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (193)
|.++..++.....|+..+.+.....+.|+++|+||+|+.... ..++.. .+... ..++++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~-~~~~~----------------~~~~~~~~ 143 (164)
T cd04175 81 SITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQ-NLARQ----------------WGCAFLET 143 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHH-HHHHH----------------hCCEEEEe
Confidence 999999999999999988765555789999999999997422 222211 11111 12478999
Q ss_pred eeecCCChhHHHHhhhhhc
Q 029453 174 SIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 174 Sa~~~~gi~~~~~~i~~~l 192 (193)
||++|.|++++|.+|.+++
T Consensus 144 Sa~~~~~v~~~~~~l~~~l 162 (164)
T cd04175 144 SAKAKINVNEIFYDLVRQI 162 (164)
T ss_pred eCCCCCCHHHHHHHHHHHh
Confidence 9999999999999998765
No 28
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.97 E-value=1.4e-29 Score=176.41 Aligned_cols=153 Identities=19% Similarity=0.333 Sum_probs=119.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcc-ccCCCCCcceeEEEe----CCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEE
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLV-QHQPTQYPTSEELSI----GKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLI 95 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~~~~~~----~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 95 (193)
+||+++|++|||||||++++..+.+. ...+|.+.......+ ....+.+|||+|++.+......++..+|++|+|+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 58999999999999999999877765 345565544433332 3468999999999988888888899999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEee
Q 029453 96 DAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSI 175 (193)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 175 (193)
|++++++++.+..|+..+.+.. .+.|+++|+||+|+.......+...... . ..++++++||
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~--~~~piiiv~nK~Dl~~~~~~~~~~~~~~--~---------------~~~~~~e~Sa 141 (166)
T cd00877 81 DVTSRVTYKNVPNWHRDLVRVC--GNIPIVLCGNKVDIKDRKVKAKQITFHR--K---------------KNLQYYEISA 141 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC--CCCcEEEEEEchhcccccCCHHHHHHHH--H---------------cCCEEEEEeC
Confidence 9999999999988888886543 2799999999999973322222111111 0 2357999999
Q ss_pred ecCCChhHHHHhhhhhc
Q 029453 176 VRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 176 ~~~~gi~~~~~~i~~~l 192 (193)
++|.|++++|++|.+.+
T Consensus 142 ~~~~~v~~~f~~l~~~~ 158 (166)
T cd00877 142 KSNYNFEKPFLWLARKL 158 (166)
T ss_pred CCCCChHHHHHHHHHHH
Confidence 99999999999998754
No 29
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.97 E-value=1e-29 Score=176.51 Aligned_cols=156 Identities=19% Similarity=0.270 Sum_probs=120.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc-eeEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEEEEE
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPT-SEELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVVYLI 95 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~-~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 95 (193)
++||+++|++|||||||++++..+.+.. ..+|.... ...+..++ ..+.+|||||++++...+..+++.+|++++|+
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (163)
T cd04136 1 EYKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhhhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence 4799999999999999999999888764 33444322 23444554 56788999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC--CCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEE
Q 029453 96 DAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYA--ASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMC 173 (193)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (193)
|+++++++.....|+..+.......+.|+++|+||+|+.+. ...++. ..+... ...+++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~-~~~~~~----------------~~~~~~~~ 143 (163)
T cd04136 81 SITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEG-QALARQ----------------WGCPFYET 143 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHH-HHHHHH----------------cCCeEEEe
Confidence 99999999999888888876554568999999999998632 222211 111111 11578999
Q ss_pred eeecCCChhHHHHhhhhhc
Q 029453 174 SIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 174 Sa~~~~gi~~~~~~i~~~l 192 (193)
||++|.|++++|++|.+.+
T Consensus 144 Sa~~~~~v~~l~~~l~~~~ 162 (163)
T cd04136 144 SAKSKINVDEVFADLVRQI 162 (163)
T ss_pred cCCCCCCHHHHHHHHHHhc
Confidence 9999999999999998764
No 30
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.97 E-value=4.2e-29 Score=176.20 Aligned_cols=157 Identities=17% Similarity=0.233 Sum_probs=120.9
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce--eEEEe------------CCeEEEEEEcCChhhhHHhHH
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPTS--EELSI------------GKIKFKAFDLGGHQMARRVWK 82 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~------------~~~~~~~~D~~g~~~~~~~~~ 82 (193)
++.+||+++|++|||||||++++.++.+.. ..+|.+... ..+.+ ....+.+||+||++++...+.
T Consensus 2 ~~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 81 (180)
T cd04127 2 DYLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTT 81 (180)
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHH
Confidence 356899999999999999999999888764 344444322 22322 236789999999999999999
Q ss_pred hhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhCCCccccCCCcccC
Q 029453 83 DYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY--AASEDELRYHMGLTNFTTGKGNVNL 160 (193)
Q Consensus 83 ~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (193)
.+++++|++++|+|+++++++..+..|+..+.......+.|+++|+||+|+.. ....++... +...
T Consensus 82 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~-~~~~----------- 149 (180)
T cd04127 82 AFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKA-LADK----------- 149 (180)
T ss_pred HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHH-HHHH-----------
Confidence 99999999999999999999999999988886544345789999999999963 223322211 1111
Q ss_pred CCCCCccEEEEEEeeecCCChhHHHHhhhhh
Q 029453 161 DNTNVRPLEVFMCSIVRKMGYGEGFKWLSQY 191 (193)
Q Consensus 161 ~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~ 191 (193)
..++++++||++|.|++++|++|.+.
T Consensus 150 -----~~~~~~e~Sak~~~~v~~l~~~l~~~ 175 (180)
T cd04127 150 -----YGIPYFETSAATGTNVEKAVERLLDL 175 (180)
T ss_pred -----cCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 11468999999999999999999864
No 31
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.97 E-value=1.7e-29 Score=174.94 Aligned_cols=157 Identities=18% Similarity=0.266 Sum_probs=121.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc-eeEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEEEEE
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPT-SEELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVVYLI 95 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~-~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 95 (193)
++||+++|++|||||||++++.++.+.. ..+|.+.. ...+..++ ..+.+||+||++++..++..+++.++++++|+
T Consensus 1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~ 80 (162)
T cd04138 1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF 80 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEE
Confidence 3699999999999999999999888753 33444332 22334444 45788999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC-CCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEe
Q 029453 96 DAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYA-ASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCS 174 (193)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 174 (193)
|++++.++.....|+..+.+.....+.|+++|+||+|+... ....+....... ..++++++|
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~-----------------~~~~~~~~S 143 (162)
T cd04138 81 AINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQDLAKS-----------------YGIPYIETS 143 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccceecHHHHHHHHHH-----------------hCCeEEEec
Confidence 99999999988888888876544568999999999999742 222232222111 124789999
Q ss_pred eecCCChhHHHHhhhhhcC
Q 029453 175 IVRKMGYGEGFKWLSQYIK 193 (193)
Q Consensus 175 a~~~~gi~~~~~~i~~~l~ 193 (193)
|++|.|++++|++|.+.++
T Consensus 144 a~~~~gi~~l~~~l~~~~~ 162 (162)
T cd04138 144 AKTRQGVEEAFYTLVREIR 162 (162)
T ss_pred CCCCCCHHHHHHHHHHHhC
Confidence 9999999999999987653
No 32
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.97 E-value=5.8e-29 Score=173.02 Aligned_cols=155 Identities=30% Similarity=0.475 Sum_probs=127.8
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCcc-ccCCCCCcceeEEEeCCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCChh
Q 029453 23 ILFLGLDNSGKTTLLHMLKDERLV-QHQPTQYPTSEELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKE 101 (193)
Q Consensus 23 i~i~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~ 101 (193)
|+++|++|||||||++++.+..+. .+.||.+.....+..++..+.+||+||++.+...+..+++.+|++++|+|++++.
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~~~ 81 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNSVAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSADSE 81 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccccccCCcceEEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHH
Confidence 789999999999999999988665 4556777666667778899999999999999999999999999999999999998
Q ss_pred hHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeeec----
Q 029453 102 RFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVR---- 177 (193)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~---- 177 (193)
++.....++..+.... .++|+++|+||+|+......+++...++...+.. ...+.++++||++
T Consensus 82 s~~~~~~~l~~~~~~~--~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~-----------~~~~~~~~~Sa~~~~s~ 148 (164)
T cd04162 82 RLPLARQELHQLLQHP--PDLPLVVLANKQDLPAARSVQEIHKELELEPIAR-----------GRRWILQGTSLDDDGSP 148 (164)
T ss_pred HHHHHHHHHHHHHhCC--CCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcC-----------CCceEEEEeeecCCCCh
Confidence 8888888888886432 6899999999999986666666666665544211 1346788888888
Q ss_pred --CCChhHHHHhhhh
Q 029453 178 --KMGYGEGFKWLSQ 190 (193)
Q Consensus 178 --~~gi~~~~~~i~~ 190 (193)
++|++++|+.++.
T Consensus 149 ~~~~~v~~~~~~~~~ 163 (164)
T cd04162 149 SRMEAVKDLLSQLIN 163 (164)
T ss_pred hHHHHHHHHHHHHhc
Confidence 9999999998864
No 33
>PTZ00369 Ras-like protein; Provisional
Probab=99.97 E-value=1.8e-29 Score=179.42 Aligned_cols=158 Identities=18% Similarity=0.244 Sum_probs=122.7
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCcc-ccCCCCCcce-eEEEeC--CeEEEEEEcCChhhhHHhHHhhhccCCEEEE
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLV-QHQPTQYPTS-EELSIG--KIKFKAFDLGGHQMARRVWKDYYAKVDAVVY 93 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~-~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 93 (193)
+..+||+++|.+|||||||++++.++.+. ...+|.+... ..+..+ ...+.+|||||++++..++..+++.++++++
T Consensus 3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil 82 (189)
T PTZ00369 3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC 82 (189)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence 45789999999999999999999988876 3445554332 233343 3568899999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC--CCHHHHHHhhCCCccccCCCcccCCCCCCccEEEE
Q 029453 94 LIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYA--ASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVF 171 (193)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (193)
|+|+++++++.....|+..+.+.....+.|+++|+||+|+... ....+...... . ..++++
T Consensus 83 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~-~----------------~~~~~~ 145 (189)
T PTZ00369 83 VYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAK-S----------------FGIPFL 145 (189)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHH-H----------------hCCEEE
Confidence 9999999999999998888876544468999999999998632 22222211111 1 124789
Q ss_pred EEeeecCCChhHHHHhhhhhc
Q 029453 172 MCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 172 ~~Sa~~~~gi~~~~~~i~~~l 192 (193)
++||++|.|++++|++|.+.+
T Consensus 146 e~Sak~~~gi~~~~~~l~~~l 166 (189)
T PTZ00369 146 ETSAKQRVNVDEAFYELVREI 166 (189)
T ss_pred EeeCCCCCCHHHHHHHHHHHH
Confidence 999999999999999998654
No 34
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.1e-29 Score=173.06 Aligned_cols=162 Identities=19% Similarity=0.261 Sum_probs=130.3
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHHhcCCcc-ccCCCCCcce--eEEEeC--CeEEEEEEcCChhhhHHhHHhhhccCCE
Q 029453 16 LWQKEAKILFLGLDNSGKTTLLHMLKDERLV-QHQPTQYPTS--EELSIG--KIKFKAFDLGGHQMARRVWKDYYAKVDA 90 (193)
Q Consensus 16 ~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~--~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 90 (193)
...+.+|++|+|..++|||||+++++.+.+. .+.+|.+..- .++.+. ...+.+|||.||++|+.+.+.|++++.+
T Consensus 18 ~~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~v 97 (221)
T KOG0094|consen 18 APLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV 97 (221)
T ss_pred ccceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeE
Confidence 3457799999999999999999999999988 4566777543 344444 4678999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEE
Q 029453 91 VVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEV 170 (193)
Q Consensus 91 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (193)
+|+|+|+++..+|+...+|+..+.+..+..+.-+++|+||.||....+. ....+.... +. -...+
T Consensus 98 aviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqv---s~eEg~~kA---ke---------l~a~f 162 (221)
T KOG0094|consen 98 AVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQV---SIEEGERKA---KE---------LNAEF 162 (221)
T ss_pred EEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhh---hHHHHHHHH---HH---------hCcEE
Confidence 9999999999999999999999998877667889999999999743222 222221110 00 12478
Q ss_pred EEEeeecCCChhHHHHhhhhhc
Q 029453 171 FMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 171 ~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
+++||+.|+|++++|..|...+
T Consensus 163 ~etsak~g~NVk~lFrrIaa~l 184 (221)
T KOG0094|consen 163 IETSAKAGENVKQLFRRIAAAL 184 (221)
T ss_pred EEecccCCCCHHHHHHHHHHhc
Confidence 9999999999999999987654
No 35
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.97 E-value=4.3e-29 Score=179.13 Aligned_cols=156 Identities=18% Similarity=0.235 Sum_probs=121.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc--eeEEEeC---CeEEEEEEcCChhhhHHhHHhhhccCCEEEEE
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPT--SEELSIG---KIKFKAFDLGGHQMARRVWKDYYAKVDAVVYL 94 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~---~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 94 (193)
+||+++|++|||||||++++.++.+.. +.+|.+.. ...+..+ ...+.+|||||++.+...+..++++++++++|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 589999999999999999999888764 45565533 2334443 46789999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhCC---CCCCCcEEEEeeCCCCC--CCCCHHHHHHhhCCCccccCCCcccCCCCCCccEE
Q 029453 95 IDAYDKERFSESKRELDALLSDE---ALADVPFLILGNKIDIP--YAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLE 169 (193)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~---~~~~~pviiv~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (193)
+|+++++++..+..|+..+.... ...+.|+++|+||+|+. +....+++....... ....
T Consensus 81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~----------------~~~~ 144 (201)
T cd04107 81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKEN----------------GFIG 144 (201)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHc----------------CCce
Confidence 99999999999988887765422 23578999999999996 334444433222111 1247
Q ss_pred EEEEeeecCCChhHHHHhhhhhc
Q 029453 170 VFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 170 ~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
++++||++|.|++++|++|.+.+
T Consensus 145 ~~e~Sak~~~~v~e~f~~l~~~l 167 (201)
T cd04107 145 WFETSAKEGINIEEAMRFLVKNI 167 (201)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHH
Confidence 89999999999999999998754
No 36
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.97 E-value=4.3e-29 Score=180.38 Aligned_cols=165 Identities=21% Similarity=0.250 Sum_probs=124.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCCh
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDK 100 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~ 100 (193)
+||+++|.+|||||||++++..+.+....+|.+.......+....+.+|||+|++.+...+..++..+|++|+|+|++++
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~~~~Tig~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~~ 80 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKDTVSTVGGAFYLKQWGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYDVSNV 80 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCCCCccceEEEEEEeeEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEECCCH
Confidence 58999999999999999999999987666777666555556678899999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC---------------------CCHHH---HHHhhCCCccccCCC
Q 029453 101 ERFSESKRELDALLSDEALADVPFLILGNKIDIPYA---------------------ASEDE---LRYHMGLTNFTTGKG 156 (193)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~---------------------~~~~~---~~~~~~~~~~~~~~~ 156 (193)
+++..+..|+..+... ...+.|+++|+||+|+... .+.++ +.+..+.... .
T Consensus 81 ~Sf~~l~~~~~~l~~~-~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~----~ 155 (220)
T cd04126 81 QSLEELEDRFLGLTDT-ANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKM----L 155 (220)
T ss_pred HHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCcccc----c
Confidence 9999999888887653 3357999999999999641 11111 1111110000 0
Q ss_pred cccCCCCCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 157 NVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 157 ~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
.+++.. ....++++|||++|.||+++|+.+.+.+
T Consensus 156 ~~~~~~--~~~~~~~E~SA~tg~~V~elf~~i~~~~ 189 (220)
T cd04126 156 DEDLSP--AAEKMCFETSAKTGYNVDELFEYLFNLV 189 (220)
T ss_pred cccccc--cccceEEEeeCCCCCCHHHHHHHHHHHH
Confidence 000000 1225799999999999999999998653
No 37
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.97 E-value=1.4e-29 Score=180.21 Aligned_cols=170 Identities=16% Similarity=0.261 Sum_probs=120.1
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCcc-ccCCCCCccee-EEEeC--CeEEEEEEcCChhhhHHhHHhhhccCCEEEEE
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERLV-QHQPTQYPTSE-ELSIG--KIKFKAFDLGGHQMARRVWKDYYAKVDAVVYL 94 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~~-~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 94 (193)
+.+||+++|.+|||||||+.++..+.+. .+.||.+.... .+..+ ...+.+|||+|++++..++..+++++|++|+|
T Consensus 2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv 81 (191)
T cd01875 2 QSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC 81 (191)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence 4689999999999999999999998885 45566654322 22333 36789999999999999999999999999999
Q ss_pred EeCCChhhHHHHHH-HHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEE
Q 029453 95 IDAYDKERFSESKR-ELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMC 173 (193)
Q Consensus 95 ~d~~~~~~~~~~~~-~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (193)
+|++++++|+.+.. |+..+.. . ..+.|+++|+||+||.......+............. .....+. ....+.++++
T Consensus 82 ydit~~~Sf~~~~~~w~~~i~~-~-~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~-~~~~~a~-~~~~~~~~e~ 157 (191)
T cd01875 82 FSIASPSSYENVRHKWHPEVCH-H-CPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQ-QGGALAK-QIHAVKYLEC 157 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHh-h-CCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHH-HHHHHHH-HcCCcEEEEe
Confidence 99999999999864 6655543 2 257999999999999643221111111111110000 0000000 0123589999
Q ss_pred eeecCCChhHHHHhhhhhc
Q 029453 174 SIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 174 Sa~~~~gi~~~~~~i~~~l 192 (193)
||++|+|++++|++|.+.+
T Consensus 158 SAk~g~~v~e~f~~l~~~~ 176 (191)
T cd01875 158 SALNQDGVKEVFAEAVRAV 176 (191)
T ss_pred CCCCCCCHHHHHHHHHHHH
Confidence 9999999999999998653
No 38
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=9.3e-30 Score=172.73 Aligned_cols=167 Identities=33% Similarity=0.594 Sum_probs=155.0
Q ss_pred hCCCCcccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCeEEEEEEcCChhhhHHhHHhhhccCCEEEE
Q 029453 14 LGLWQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVY 93 (193)
Q Consensus 14 ~~~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 93 (193)
....+++.+|.++|--+|||||++.++..++...+.||.+.+.+.+.+.+..+.+||.+|+++++..|++|+++.+++||
T Consensus 11 ~~~~~~e~~IlmlGLD~AGKTTILykLk~~E~vttvPTiGfnVE~v~ykn~~f~vWDvGGq~k~R~lW~~Y~~~t~~lIf 90 (181)
T KOG0070|consen 11 GLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTVPTIGFNVETVEYKNISFTVWDVGGQEKLRPLWKHYFQNTQGLIF 90 (181)
T ss_pred hccCcceEEEEEEeccCCCceeeeEeeccCCcccCCCccccceeEEEEcceEEEEEecCCCcccccchhhhccCCcEEEE
Confidence 34688999999999999999999999999999988999999999999999999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEE
Q 029453 94 LIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMC 173 (193)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (193)
|+|.+|++++.+....+..++......+.|+++..||.|++.+-+..++.+.+++..+.. +.+.+..|
T Consensus 91 VvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~------------~~w~iq~~ 158 (181)
T KOG0070|consen 91 VVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRS------------RNWHIQST 158 (181)
T ss_pred EEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhhhccCC------------CCcEEeec
Confidence 999999999999999999999887778999999999999998888889988888777321 66899999
Q ss_pred eeecCCChhHHHHhhhhhc
Q 029453 174 SIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 174 Sa~~~~gi~~~~~~i~~~l 192 (193)
+|.+|+|+.|.++||.+.+
T Consensus 159 ~a~~G~GL~egl~wl~~~~ 177 (181)
T KOG0070|consen 159 CAISGEGLYEGLDWLSNNL 177 (181)
T ss_pred cccccccHHHHHHHHHHHH
Confidence 9999999999999998765
No 39
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.97 E-value=6.2e-29 Score=173.15 Aligned_cols=155 Identities=25% Similarity=0.375 Sum_probs=120.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce--eEEEeC--CeEEEEEEcCChhhhHHhHHhhhccCCEEEEEE
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPTS--EELSIG--KIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLI 95 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 95 (193)
+||+++|++|||||||++++.++.+.. +.+|.+... ..+..+ ...+.+|||||++.+...+..+++.+|++++|+
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 589999999999999999999988764 344544332 233333 468889999999999988899999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhCCCC----CCCcEEEEeeCCCCCC--CCCHHHHHHhhCCCccccCCCcccCCCCCCccEE
Q 029453 96 DAYDKERFSESKRELDALLSDEAL----ADVPFLILGNKIDIPY--AASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLE 169 (193)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~----~~~pviiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (193)
|+++++++.....|+..+...... .+.|+++|+||+|+.+ ....++...... . ...+
T Consensus 81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-~----------------~~~~ 143 (168)
T cd04119 81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAE-S----------------KGFK 143 (168)
T ss_pred ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHH-H----------------cCCe
Confidence 999999999998888888664432 5799999999999963 223333222111 1 1146
Q ss_pred EEEEeeecCCChhHHHHhhhhhc
Q 029453 170 VFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 170 ~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
++++||++|.|++++|++|.+.+
T Consensus 144 ~~~~Sa~~~~gi~~l~~~l~~~l 166 (168)
T cd04119 144 YFETSACTGEGVNEMFQTLFSSI 166 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 89999999999999999998754
No 40
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.97 E-value=3e-28 Score=167.95 Aligned_cols=156 Identities=35% Similarity=0.586 Sum_probs=128.3
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCcc-ccCCCCCcceeEEEeCCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCChh
Q 029453 23 ILFLGLDNSGKTTLLHMLKDERLV-QHQPTQYPTSEELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKE 101 (193)
Q Consensus 23 i~i~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~ 101 (193)
|+++|++|||||||++++.+.++. .+.+|.+.....+..++..+.+||+||+..+...+..++..+|++++|+|+++..
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~ 81 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRKVTKGNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAADRT 81 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCCHH
Confidence 799999999999999999998876 4556777766677778889999999999999999999999999999999999988
Q ss_pred hHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeeecCCCh
Q 029453 102 RFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGY 181 (193)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 181 (193)
++.....++..+.......++|+++|+||+|+.......++...++.... ....++++++|+++|.|+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~Sa~~~~gi 149 (159)
T cd04159 82 ALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQMNLKSI------------TDREVSCYSISCKEKTNI 149 (159)
T ss_pred HHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHHHHHHhCcccc------------cCCceEEEEEEeccCCCh
Confidence 88888888888776554568999999999999765555555555543331 013468899999999999
Q ss_pred hHHHHhhhh
Q 029453 182 GEGFKWLSQ 190 (193)
Q Consensus 182 ~~~~~~i~~ 190 (193)
++++++|.+
T Consensus 150 ~~l~~~l~~ 158 (159)
T cd04159 150 DIVLDWLIK 158 (159)
T ss_pred HHHHHHHhh
Confidence 999999975
No 41
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.97 E-value=6.3e-29 Score=172.67 Aligned_cols=157 Identities=17% Similarity=0.266 Sum_probs=120.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc-eeEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEEEEE
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPT-SEELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVVYLI 95 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~-~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 95 (193)
.+||+++|++|+|||||++++.++.+.. ..++.... ......++ ..+.+|||||++++..++..+++.+|++++|+
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 81 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLVF 81 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEEE
Confidence 4799999999999999999999887653 33343322 22333444 56889999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCC--CHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEE
Q 029453 96 DAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAA--SEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMC 173 (193)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (193)
|++++.++.....|+..+.+.....+.|+++++||+|+.... ..++...... . ...+++++
T Consensus 82 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~-~----------------~~~~~~~~ 144 (164)
T cd04145 82 SVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELAR-K----------------LKIPYIET 144 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHH-H----------------cCCcEEEe
Confidence 999999999999988888765444679999999999996432 2222211111 0 11368999
Q ss_pred eeecCCChhHHHHhhhhhcC
Q 029453 174 SIVRKMGYGEGFKWLSQYIK 193 (193)
Q Consensus 174 Sa~~~~gi~~~~~~i~~~l~ 193 (193)
||++|.|++++|++|.+.++
T Consensus 145 Sa~~~~~i~~l~~~l~~~~~ 164 (164)
T cd04145 145 SAKDRLNVDKAFHDLVRVIR 164 (164)
T ss_pred eCCCCCCHHHHHHHHHHhhC
Confidence 99999999999999987753
No 42
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.97 E-value=7.1e-29 Score=172.91 Aligned_cols=155 Identities=18% Similarity=0.257 Sum_probs=120.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccccC-CCCCcce--eEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEEEE
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDERLVQHQ-PTQYPTS--EELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVVYL 94 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~~~~~~~-~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 94 (193)
.+||+++|++|||||||++++.++.+.... +|.+... ..+..++ ..+.+||+||++++...+..+++.+|++++|
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 81 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 81 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 379999999999999999999998876543 3444332 2334443 5789999999999999888999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC--CCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEE
Q 029453 95 IDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYA--ASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFM 172 (193)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (193)
+|++++++++.+..|+..+... ..++.|+++|+||+|+... ...++....... ..+++++
T Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~e 143 (166)
T cd04122 82 YDITRRSTYNHLSSWLTDARNL-TNPNTVIFLIGNKADLEAQRDVTYEEAKQFADE-----------------NGLLFLE 143 (166)
T ss_pred EECCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECcccccccCcCHHHHHHHHHH-----------------cCCEEEE
Confidence 9999999999999998877543 3357899999999999633 233333222111 1257899
Q ss_pred EeeecCCChhHHHHhhhhhc
Q 029453 173 CSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 173 ~Sa~~~~gi~~~~~~i~~~l 192 (193)
+||++|.|++++|+++...+
T Consensus 144 ~Sa~~~~~i~e~f~~l~~~~ 163 (166)
T cd04122 144 CSAKTGENVEDAFLETAKKI 163 (166)
T ss_pred EECCCCCCHHHHHHHHHHHH
Confidence 99999999999999988654
No 43
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.97 E-value=1.3e-28 Score=171.34 Aligned_cols=157 Identities=21% Similarity=0.280 Sum_probs=121.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCcccc-CCCCC--cceeEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEEE
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERLVQH-QPTQY--PTSEELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVVY 93 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~~~~-~~t~~--~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 93 (193)
+.+||+++|++|||||||++++.++.+... .++.+ .....+..++ ..+.+||+||++.+......++..+|++++
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll 81 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII 81 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 458999999999999999999998876643 33443 2334455555 578999999999999888889999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC--CCHHHHHHhhCCCccccCCCcccCCCCCCccEEEE
Q 029453 94 LIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYA--ASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVF 171 (193)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (193)
|+|++++++++.+..|+..+... ...+.|+++|+||+|+... ...++...... .. +...++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-~~---------------~~~~~~ 144 (165)
T cd01864 82 AYDITRRSSFESVPHWIEEVEKY-GASNVVLLLIGNKCDLEEQREVLFEEACTLAE-KN---------------GMLAVL 144 (165)
T ss_pred EEECcCHHHHHhHHHHHHHHHHh-CCCCCcEEEEEECcccccccccCHHHHHHHHH-Hc---------------CCcEEE
Confidence 99999999999988888888643 3457999999999999632 22222222111 11 224689
Q ss_pred EEeeecCCChhHHHHhhhhhc
Q 029453 172 MCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 172 ~~Sa~~~~gi~~~~~~i~~~l 192 (193)
++||++|.|+++++++|.+.+
T Consensus 145 e~Sa~~~~~v~~~~~~l~~~l 165 (165)
T cd01864 145 ETSAKESQNVEEAFLLMATEL 165 (165)
T ss_pred EEECCCCCCHHHHHHHHHHhC
Confidence 999999999999999998754
No 44
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.97 E-value=5.7e-29 Score=172.94 Aligned_cols=155 Identities=21% Similarity=0.291 Sum_probs=119.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc-eeEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEEEEEe
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPT-SEELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVVYLID 96 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~-~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 96 (193)
+||+++|++|||||||++++.+..+.. ..+|.... ...+..++ ..+.+|||||++++...+..+++.++++++|+|
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 80 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYS 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEE
Confidence 589999999999999999999887664 33333321 23333443 578899999999999988899999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCC--CHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEe
Q 029453 97 AYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAA--SEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCS 174 (193)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 174 (193)
+++++++.....|+..+.+.....+.|+++|+||+|+.... ..++...... . ...+++++|
T Consensus 81 ~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~-~----------------~~~~~~~~S 143 (164)
T smart00173 81 ITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELAR-Q----------------WGCPFLETS 143 (164)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHH-H----------------cCCEEEEee
Confidence 99999999998888887765555679999999999996422 2222211111 1 114789999
Q ss_pred eecCCChhHHHHhhhhhc
Q 029453 175 IVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 175 a~~~~gi~~~~~~i~~~l 192 (193)
|++|.|++++|++|.+.+
T Consensus 144 a~~~~~i~~l~~~l~~~~ 161 (164)
T smart00173 144 AKERVNVDEAFYDLVREI 161 (164)
T ss_pred cCCCCCHHHHHHHHHHHH
Confidence 999999999999998765
No 45
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.97 E-value=1.1e-28 Score=178.93 Aligned_cols=156 Identities=18% Similarity=0.316 Sum_probs=123.3
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCcc-ccCCCCCcceeEEE--e--CCeEEEEEEcCChhhhHHhHHhhhccCCEE
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLV-QHQPTQYPTSEELS--I--GKIKFKAFDLGGHQMARRVWKDYYAKVDAV 91 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~~~~~--~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~i 91 (193)
....+||+++|.+|||||||++++..+.+. .+.+|.+....... . ....+.+|||+|++.+...+..+++.++++
T Consensus 10 ~~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ 89 (219)
T PLN03071 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (219)
T ss_pred CCCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEE
Confidence 367899999999999999999999888876 34566665443333 2 347899999999999999888899999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC-CCHHHHHHhhCCCccccCCCcccCCCCCCccEEE
Q 029453 92 VYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYA-ASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEV 170 (193)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (193)
|+|+|+++++++.....|+..+... ..+.|+++|+||+|+... ...+++ .+. . ...+.+
T Consensus 90 ilvfD~~~~~s~~~i~~w~~~i~~~--~~~~piilvgNK~Dl~~~~v~~~~~--~~~--~--------------~~~~~~ 149 (219)
T PLN03071 90 IIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQV--TFH--R--------------KKNLQY 149 (219)
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHh--CCCCcEEEEEEchhhhhccCCHHHH--HHH--H--------------hcCCEE
Confidence 9999999999999999998888643 257999999999999632 222222 110 0 023578
Q ss_pred EEEeeecCCChhHHHHhhhhhc
Q 029453 171 FMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 171 ~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
+++||++|.|++++|+||.+.+
T Consensus 150 ~e~SAk~~~~i~~~f~~l~~~~ 171 (219)
T PLN03071 150 YEISAKSNYNFEKPFLYLARKL 171 (219)
T ss_pred EEcCCCCCCCHHHHHHHHHHHH
Confidence 9999999999999999998754
No 46
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.97 E-value=3.5e-29 Score=173.90 Aligned_cols=156 Identities=18% Similarity=0.259 Sum_probs=120.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCcccc-CCCCC-cceeEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEEEEE
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDERLVQH-QPTQY-PTSEELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVVYLI 95 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~~~~~~-~~t~~-~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 95 (193)
++||+++|.+|||||||++++..+.+... .+|.. .....+..++ ..+.+|||||++++...+..++.++|++++|+
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~ 80 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVY 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchhheEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEE
Confidence 47999999999999999999998887643 33432 1223444444 46789999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCC--CHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEE
Q 029453 96 DAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAA--SEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMC 173 (193)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (193)
|+++++++.....|+..+.......++|+++|+||+|+.+.. ...+ ...+... ..++++++
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~-~~~~~~~----------------~~~~~~~~ 143 (163)
T cd04176 81 SLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAE-GRALAEE----------------WGCPFMET 143 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHH-HHHHHHH----------------hCCEEEEe
Confidence 999999999999888888765545689999999999986322 2211 1111111 12478999
Q ss_pred eeecCCChhHHHHhhhhhc
Q 029453 174 SIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 174 Sa~~~~gi~~~~~~i~~~l 192 (193)
||++|.|++++|++|.+.+
T Consensus 144 Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd04176 144 SAKSKTMVNELFAEIVRQM 162 (163)
T ss_pred cCCCCCCHHHHHHHHHHhc
Confidence 9999999999999998765
No 47
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.97 E-value=3.2e-28 Score=169.79 Aligned_cols=156 Identities=21% Similarity=0.278 Sum_probs=122.0
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce--eEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEEE
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPTS--EELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVVY 93 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 93 (193)
..+||+++|++|||||||++++.++.+.. +.+|.+... ..+..++ ..+.+||+||++.+......+++++|++++
T Consensus 2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~ 81 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (167)
T ss_pred cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEE
Confidence 35899999999999999999999988764 344544332 3344444 578999999999998888889999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEE
Q 029453 94 LIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY--AASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVF 171 (193)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (193)
|+|+++++++..+..|+..+... ...+.|+++|+||+|+.. ....++....... ..++++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~ 143 (167)
T cd01867 82 VYDITDEKSFENIRNWMRNIEEH-ASEDVERMLVGNKCDMEEKRVVSKEEGEALADE-----------------YGIKFL 143 (167)
T ss_pred EEECcCHHHHHhHHHHHHHHHHh-CCCCCcEEEEEECcccccccCCCHHHHHHHHHH-----------------cCCEEE
Confidence 99999999999999988887643 335789999999999973 2233333222211 124789
Q ss_pred EEeeecCCChhHHHHhhhhhc
Q 029453 172 MCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 172 ~~Sa~~~~gi~~~~~~i~~~l 192 (193)
++||++|.|++++|++|.+++
T Consensus 144 ~~Sa~~~~~v~~~~~~i~~~~ 164 (167)
T cd01867 144 ETSAKANINVEEAFFTLAKDI 164 (167)
T ss_pred EEeCCCCCCHHHHHHHHHHHH
Confidence 999999999999999998764
No 48
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.96 E-value=1.1e-28 Score=173.33 Aligned_cols=167 Identities=20% Similarity=0.283 Sum_probs=118.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcc-ccCCCCCccee-EEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEEEEEe
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLV-QHQPTQYPTSE-ELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVVYLID 96 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~~-~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 96 (193)
+||+++|.+|||||||++++..+.+. .+.||.+.... .+..++ ..+.+|||+|++++...+..++..+|++++|+|
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d 81 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFS 81 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEEE
Confidence 68999999999999999999998885 45566654332 445555 678899999999998888888999999999999
Q ss_pred CCChhhHHHHHH-HHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEee
Q 029453 97 AYDKERFSESKR-ELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSI 175 (193)
Q Consensus 97 ~~~~~~~~~~~~-~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 175 (193)
+++++++..... |+..+... . .+.|+++|+||+|+.......+............ ......+. ....+.+++|||
T Consensus 82 ~~~~~s~~~~~~~w~~~i~~~-~-~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~-~~~~~~a~-~~~~~~~~e~SA 157 (175)
T cd01874 82 VVSPSSFENVKEKWVPEITHH-C-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITP-ETGEKLAR-DLKAVKYVECSA 157 (175)
T ss_pred CCCHHHHHHHHHHHHHHHHHh-C-CCCCEEEEEECHhhhhChhhHHHhhhccCCCcCH-HHHHHHHH-HhCCcEEEEecC
Confidence 999999998864 66555432 2 5799999999999864322111111110000000 00000000 012368999999
Q ss_pred ecCCChhHHHHhhhhh
Q 029453 176 VRKMGYGEGFKWLSQY 191 (193)
Q Consensus 176 ~~~~gi~~~~~~i~~~ 191 (193)
++|.|++++|+.++..
T Consensus 158 ~tg~~v~~~f~~~~~~ 173 (175)
T cd01874 158 LTQKGLKNVFDEAILA 173 (175)
T ss_pred CCCCCHHHHHHHHHHH
Confidence 9999999999998764
No 49
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.96 E-value=4.3e-28 Score=168.17 Aligned_cols=153 Identities=18% Similarity=0.292 Sum_probs=119.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce--eEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEEEEE
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPTS--EELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVVYLI 95 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 95 (193)
+||+++|++|||||||++++.++.+.. ..+|.+... ..+..++ ..+.+||++|++.+......++..+|++++|+
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 489999999999999999999888764 455655433 3455554 57889999999999988889999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC--CCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEE
Q 029453 96 DAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYA--ASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMC 173 (193)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (193)
|+++++++.....|+..+... ...+.|+++|+||+|+... ...++..... .. ..++++++
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~-~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~-~~----------------~~~~~~e~ 142 (161)
T cd04117 81 DISSERSYQHIMKWVSDVDEY-APEGVQKILIGNKADEEQKRQVGDEQGNKLA-KE----------------YGMDFFET 142 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECcccccccCCCHHHHHHHH-HH----------------cCCEEEEE
Confidence 999999999999988877543 3347999999999998632 2222221111 11 11468999
Q ss_pred eeecCCChhHHHHhhhhh
Q 029453 174 SIVRKMGYGEGFKWLSQY 191 (193)
Q Consensus 174 Sa~~~~gi~~~~~~i~~~ 191 (193)
||++|.|++++|++|.+.
T Consensus 143 Sa~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 143 SACTNSNIKESFTRLTEL 160 (161)
T ss_pred eCCCCCCHHHHHHHHHhh
Confidence 999999999999999865
No 50
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.96 E-value=3.4e-28 Score=168.82 Aligned_cols=155 Identities=21% Similarity=0.333 Sum_probs=122.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc--eeEEEeC--CeEEEEEEcCChhhhHHhHHhhhccCCEEEEE
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPT--SEELSIG--KIKFKAFDLGGHQMARRVWKDYYAKVDAVVYL 94 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 94 (193)
++||+++|++|||||||++++.++++.. ..++.+.. ...+.++ ...+.+||+||++++...+..+++.+|++++|
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 80 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence 4799999999999999999999998775 55555532 2344444 36789999999999988888889999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEE
Q 029453 95 IDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY--AASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFM 172 (193)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (193)
+|+++++++.....|+..+..... .+.|+++++||+|+.. ....++...... .. ...+++
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~~~~~~~~~~~~~~~-~~----------------~~~~~~ 142 (163)
T cd01860 81 YDITSEESFEKAKSWVKELQRNAS-PNIIIALVGNKADLESKRQVSTEEAQEYAD-EN----------------GLLFFE 142 (163)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECccccccCcCCHHHHHHHHH-Hc----------------CCEEEE
Confidence 999999999999999888865543 6799999999999873 223333222211 11 147899
Q ss_pred EeeecCCChhHHHHhhhhhc
Q 029453 173 CSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 173 ~Sa~~~~gi~~~~~~i~~~l 192 (193)
+||++|.|+++++++|.+++
T Consensus 143 ~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd01860 143 TSAKTGENVNELFTEIAKKL 162 (163)
T ss_pred EECCCCCCHHHHHHHHHHHh
Confidence 99999999999999998875
No 51
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.96 E-value=4.3e-28 Score=168.80 Aligned_cols=154 Identities=19% Similarity=0.289 Sum_probs=118.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce--eEEEeC--CeEEEEEEcCChhhhHHhHHhhhccCCEEEEEE
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPTS--EELSIG--KIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLI 95 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 95 (193)
+||+++|++|||||||++++.++++.. +.+|.+... ..+..+ ...+.+||+||++++...+..+++.+|++++|+
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 699999999999999999999988764 345554322 233333 367999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCC--CHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEE
Q 029453 96 DAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAA--SEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMC 173 (193)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (193)
|+++++++..+..|+..+.. ....+.|+++|+||+|+.+.. ..++..+.... ..++++++
T Consensus 82 d~~~~~s~~~~~~~~~~i~~-~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~~~ 143 (165)
T cd01865 82 DITNEESFNAVQDWSTQIKT-YSWDNAQVILVGNKCDMEDERVVSSERGRQLADQ-----------------LGFEFFEA 143 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHH-hCCCCCCEEEEEECcccCcccccCHHHHHHHHHH-----------------cCCEEEEE
Confidence 99999999999888888753 333578999999999996432 22222111110 11368999
Q ss_pred eeecCCChhHHHHhhhhhc
Q 029453 174 SIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 174 Sa~~~~gi~~~~~~i~~~l 192 (193)
||++|.|++++|++|.+.+
T Consensus 144 Sa~~~~gv~~l~~~l~~~~ 162 (165)
T cd01865 144 SAKENINVKQVFERLVDII 162 (165)
T ss_pred ECCCCCCHHHHHHHHHHHH
Confidence 9999999999999998754
No 52
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.96 E-value=5.1e-28 Score=169.19 Aligned_cols=159 Identities=19% Similarity=0.275 Sum_probs=122.2
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc--eeEEEeC--CeEEEEEEcCChhhhHHhHHhhhccCCEEE
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPT--SEELSIG--KIKFKAFDLGGHQMARRVWKDYYAKVDAVV 92 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 92 (193)
...+||+++|++|||||||++++.++.+.. ..++.+.. ...+..+ ...+.+||+||++++...+..+++.+|+++
T Consensus 3 ~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i 82 (170)
T cd04116 3 SSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCL 82 (170)
T ss_pred ceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEE
Confidence 356899999999999999999999888764 33444433 2233443 357889999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhCCC---CCCCcEEEEeeCCCCCC-CCCHHHHHHhhCCCccccCCCcccCCCCCCccE
Q 029453 93 YLIDAYDKERFSESKRELDALLSDEA---LADVPFLILGNKIDIPY-AASEDELRYHMGLTNFTTGKGNVNLDNTNVRPL 168 (193)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~---~~~~pviiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (193)
+|+|++++++++.+..|...+..... ..+.|+++|+||+|+.. ....++..+.... . ..+
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-~---------------~~~ 146 (170)
T cd04116 83 LTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCRE-N---------------GDY 146 (170)
T ss_pred EEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHHH-C---------------CCC
Confidence 99999999999998888887765332 24689999999999963 3344443332211 1 224
Q ss_pred EEEEEeeecCCChhHHHHhhhhhc
Q 029453 169 EVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 169 ~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
+++++||++|.|++++|+++.+.+
T Consensus 147 ~~~e~Sa~~~~~v~~~~~~~~~~~ 170 (170)
T cd04116 147 PYFETSAKDATNVAAAFEEAVRRV 170 (170)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhC
Confidence 789999999999999999998753
No 53
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.96 E-value=1.4e-28 Score=173.46 Aligned_cols=169 Identities=21% Similarity=0.309 Sum_probs=119.2
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce-eEEEeC--CeEEEEEEcCChhhhHHhHHhhhccCCEEE
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPTS-EELSIG--KIKFKAFDLGGHQMARRVWKDYYAKVDAVV 92 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 92 (193)
.+.++||+++|.+|+|||||++++..+.+.. +.||.+... ..+..+ ...+.+|||+|++++..+...+++.+|+++
T Consensus 2 ~~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~i 81 (182)
T cd04172 2 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 81 (182)
T ss_pred CcceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeEEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEE
Confidence 4567899999999999999999999988764 455655332 233343 367999999999999999899999999999
Q ss_pred EEEeCCChhhHHHH-HHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCH-HHHHHhhC-CCccccCCCcccCCCCCCccEE
Q 029453 93 YLIDAYDKERFSES-KRELDALLSDEALADVPFLILGNKIDIPYAASE-DELRYHMG-LTNFTTGKGNVNLDNTNVRPLE 169 (193)
Q Consensus 93 ~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 169 (193)
+|+|++++++|..+ ..|+..+... . ++.|+++|+||+|+...... .++..... ....+.+. ..+. ......
T Consensus 82 lvyDit~~~Sf~~~~~~w~~~i~~~-~-~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~---~~a~-~~~~~~ 155 (182)
T cd04172 82 ICFDISRPETLDSVLKKWKGEIQEF-C-PNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGA---NMAK-QIGAAT 155 (182)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHH-C-CCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHH---HHHH-HcCCCE
Confidence 99999999999997 6777776543 2 57999999999998532100 00000000 00000000 0000 001247
Q ss_pred EEEEeeecCCC-hhHHHHhhhhh
Q 029453 170 VFMCSIVRKMG-YGEGFKWLSQY 191 (193)
Q Consensus 170 ~~~~Sa~~~~g-i~~~~~~i~~~ 191 (193)
+++|||++|.| ++++|+.+...
T Consensus 156 ~~E~SAk~~~n~v~~~F~~~~~~ 178 (182)
T cd04172 156 YIECSALQSENSVRDIFHVATLA 178 (182)
T ss_pred EEECCcCCCCCCHHHHHHHHHHH
Confidence 89999999998 99999988763
No 54
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.96 E-value=7.9e-29 Score=161.40 Aligned_cols=172 Identities=34% Similarity=0.612 Sum_probs=155.1
Q ss_pred HHHHHHHHHHhCCCCcccEEEEEcCCCCCHHHHHHHHhcCCcc-ccCCCCCcceeEEEeCCeEEEEEEcCChhhhHHhHH
Q 029453 4 VDWFYGILVSLGLWQKEAKILFLGLDNSGKTTLLHMLKDERLV-QHQPTQYPTSEELSIGKIKFKAFDLGGHQMARRVWK 82 (193)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~ 82 (193)
+.|+.+. +++.+..+.++|-.+||||||+|.+..+.+. ..-||.+.+...++-++..+.+||.||+..++.+|.
T Consensus 9 L~wi~~~-----f~k~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmrk~tkgnvtiklwD~gGq~rfrsmWe 83 (186)
T KOG0075|consen 9 LVWICNS-----FWKEEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWE 83 (186)
T ss_pred HHHHHHH-----HHHheeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeEEeccCceEEEEEecCCCccHHHHHH
Confidence 4555554 4788999999999999999999999987776 457899999999999999999999999999999999
Q ss_pred hhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCC
Q 029453 83 DYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDN 162 (193)
Q Consensus 83 ~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (193)
.|...+++++||+|+++++.+......+..++......++|+++.+||.|++.+-...++...+++.....
T Consensus 84 rycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~~li~rmgL~sitd--------- 154 (186)
T KOG0075|consen 84 RYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKIALIERMGLSSITD--------- 154 (186)
T ss_pred HHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccHHHHHHHhCcccccc---------
Confidence 99999999999999999999999999999999988889999999999999998889999999999877321
Q ss_pred CCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 163 TNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 163 ~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
+.+-.+.+|+++..|++.+.+||.++.
T Consensus 155 ---REvcC~siScke~~Nid~~~~Wli~hs 181 (186)
T KOG0075|consen 155 ---REVCCFSISCKEKVNIDITLDWLIEHS 181 (186)
T ss_pred ---ceEEEEEEEEcCCccHHHHHHHHHHHh
Confidence 567789999999999999999998764
No 55
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.96 E-value=8.1e-29 Score=173.65 Aligned_cols=153 Identities=16% Similarity=0.246 Sum_probs=117.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcc-ccCCCCCcce-eEEEeC--CeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEe
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLV-QHQPTQYPTS-EELSIG--KIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLID 96 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~-~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 96 (193)
+||+++|.+|+|||||+.++..+.+. .+.+|.+... ..+..+ ...+.+|||+|++++..+...+++.++++|+|+|
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd 81 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS 81 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEEE
Confidence 58999999999999999999999887 4556665433 223333 3678999999999999988899999999999999
Q ss_pred CCChhhHHHH-HHHHHHHHhCCCCCCCcEEEEeeCCCCCCCC------------CHHHHHHhhCCCccccCCCcccCCCC
Q 029453 97 AYDKERFSES-KRELDALLSDEALADVPFLILGNKIDIPYAA------------SEDELRYHMGLTNFTTGKGNVNLDNT 163 (193)
Q Consensus 97 ~~~~~~~~~~-~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (193)
++++++|+.+ ..|+..+.... .+.|+++|+||+|+.+.. ..++.. .+....
T Consensus 82 ~~~~~Sf~~~~~~w~~~i~~~~--~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~-~~a~~~------------- 145 (176)
T cd04133 82 LISRASYENVLKKWVPELRHYA--PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGE-ELRKQI------------- 145 (176)
T ss_pred cCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHH-HHHHHc-------------
Confidence 9999999998 57888775432 479999999999996421 111111 110000
Q ss_pred CCccEEEEEEeeecCCChhHHHHhhhhh
Q 029453 164 NVRPLEVFMCSIVRKMGYGEGFKWLSQY 191 (193)
Q Consensus 164 ~~~~~~~~~~Sa~~~~gi~~~~~~i~~~ 191 (193)
....+++|||++|.|++++|+.+.+.
T Consensus 146 --~~~~~~E~SAk~~~nV~~~F~~~~~~ 171 (176)
T cd04133 146 --GAAAYIECSSKTQQNVKAVFDAAIKV 171 (176)
T ss_pred --CCCEEEECCCCcccCHHHHHHHHHHH
Confidence 12368999999999999999999874
No 56
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.96 E-value=5.1e-28 Score=173.28 Aligned_cols=156 Identities=22% Similarity=0.333 Sum_probs=121.3
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCcc-ccCCCCCcce--eEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEE
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLV-QHQPTQYPTS--EELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVV 92 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 92 (193)
...+||+++|++|||||||++++.+..+. .+.+|.+... ..+..++ ..+.+||+||++.+...+..++..+++++
T Consensus 4 ~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~ii 83 (199)
T cd04110 4 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVI 83 (199)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEE
Confidence 45789999999999999999999988876 3445555332 3334333 57899999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCC--CHHHHHHhhCCCccccCCCcccCCCCCCccEEE
Q 029453 93 YLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAA--SEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEV 170 (193)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (193)
+|+|+++++++..+..|+..+... ....|+++|+||+|+.+.. ..++...... . ..+.+
T Consensus 84 lv~D~~~~~s~~~~~~~~~~i~~~--~~~~piivVgNK~Dl~~~~~~~~~~~~~~~~-~----------------~~~~~ 144 (199)
T cd04110 84 VVYDVTNGESFVNVKRWLQEIEQN--CDDVCKVLVGNKNDDPERKVVETEDAYKFAG-Q----------------MGISL 144 (199)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHh--CCCCCEEEEEECcccccccccCHHHHHHHHH-H----------------cCCEE
Confidence 999999999999999888887543 2578999999999997432 2222222111 1 11478
Q ss_pred EEEeeecCCChhHHHHhhhhhc
Q 029453 171 FMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 171 ~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
+++||++|.|++++|++|.+.+
T Consensus 145 ~e~Sa~~~~gi~~lf~~l~~~~ 166 (199)
T cd04110 145 FETSAKENINVEEMFNCITELV 166 (199)
T ss_pred EEEECCCCcCHHHHHHHHHHHH
Confidence 9999999999999999997653
No 57
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.96 E-value=5.4e-28 Score=168.42 Aligned_cols=154 Identities=21% Similarity=0.301 Sum_probs=119.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc--eeEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEEEEE
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPT--SEELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVVYLI 95 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 95 (193)
+||+++|++|||||||++++.++.+.. +.+|.+.. ...+..++ ..+.+||+||++++...+..+++.+|++++|+
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~ 82 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY 82 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEEE
Confidence 799999999999999999999887764 33444432 23344443 57899999999999988889999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC--CCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEE
Q 029453 96 DAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYA--ASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMC 173 (193)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (193)
|+++++++..+..|+..+... ...+.|+++|+||+|+... ...++...... . ..++++++
T Consensus 83 d~~~~~s~~~l~~~~~~~~~~-~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~-~----------------~~~~~~~~ 144 (166)
T cd01869 83 DVTDQESFNNVKQWLQEIDRY-ASENVNKLLVGNKCDLTDKRVVDYSEAQEFAD-E----------------LGIPFLET 144 (166)
T ss_pred ECcCHHHHHhHHHHHHHHHHh-CCCCCcEEEEEEChhcccccCCCHHHHHHHHH-H----------------cCCeEEEE
Confidence 999999999999988887543 3357899999999998632 22222222111 1 12478999
Q ss_pred eeecCCChhHHHHhhhhhc
Q 029453 174 SIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 174 Sa~~~~gi~~~~~~i~~~l 192 (193)
||++|.|++++|++|.+.+
T Consensus 145 Sa~~~~~v~~~~~~i~~~~ 163 (166)
T cd01869 145 SAKNATNVEQAFMTMAREI 163 (166)
T ss_pred ECCCCcCHHHHHHHHHHHH
Confidence 9999999999999998765
No 58
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.96 E-value=8.6e-28 Score=167.21 Aligned_cols=155 Identities=23% Similarity=0.308 Sum_probs=121.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCcc-ccCCCCCc--ceeEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEEEE
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDERLV-QHQPTQYP--TSEELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVVYL 94 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~~~~-~~~~t~~~--~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 94 (193)
.+||+++|++|||||||++++.++.+. ...++.+. ....+..++ ..+.+||+||++++......+++.++++++|
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v 82 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV 82 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEE
Confidence 479999999999999999999988866 34455543 233444554 4789999999999988888899999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC--CCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEE
Q 029453 95 IDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYA--ASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFM 172 (193)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (193)
+|+++++++.....|+..+... ...+.|+++|+||+|+... ...++....... ..+.+++
T Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~-~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~~ 144 (165)
T cd01868 83 YDITKKQTFENVERWLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEK-----------------NGLSFIE 144 (165)
T ss_pred EECcCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECccccccccCCHHHHHHHHHH-----------------cCCEEEE
Confidence 9999999999999888887543 2346899999999998632 233332222211 1257899
Q ss_pred EeeecCCChhHHHHhhhhhc
Q 029453 173 CSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 173 ~Sa~~~~gi~~~~~~i~~~l 192 (193)
+||++|.|+++++++|.+.+
T Consensus 145 ~Sa~~~~~v~~l~~~l~~~i 164 (165)
T cd01868 145 TSALDGTNVEEAFKQLLTEI 164 (165)
T ss_pred EECCCCCCHHHHHHHHHHHh
Confidence 99999999999999998765
No 59
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.96 E-value=5.8e-28 Score=167.52 Aligned_cols=152 Identities=18% Similarity=0.324 Sum_probs=117.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce--eEEEeC----CeEEEEEEcCChhhhHHhHHhhhccCCEEEE
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPTS--EELSIG----KIKFKAFDLGGHQMARRVWKDYYAKVDAVVY 93 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~----~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 93 (193)
+||+++|.+|+|||||++++.++.+.. ..+|.+... ..+.+. ...+.+|||||++++...+..+++.+|++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 489999999999999999999887653 344544332 223333 4689999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC--CCHHHHHHhhCCCccccCCCcccCCCCCCccEEEE
Q 029453 94 LIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYA--ASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVF 171 (193)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (193)
|+|+++++++.....|+..+... ..+.|+++|+||+|+... ...++....... ..++++
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~~--~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~-----------------~~~~~~ 141 (162)
T cd04106 81 VFSTTDRESFEAIESWKEKVEAE--CGDIPMVLVQTKIDLLDQAVITNEEAEALAKR-----------------LQLPLF 141 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhcccccCCCHHHHHHHHHH-----------------cCCeEE
Confidence 99999999999888888877532 257999999999998642 223332211111 113789
Q ss_pred EEeeecCCChhHHHHhhhhh
Q 029453 172 MCSIVRKMGYGEGFKWLSQY 191 (193)
Q Consensus 172 ~~Sa~~~~gi~~~~~~i~~~ 191 (193)
++||++|.|+++++++|.+.
T Consensus 142 ~~Sa~~~~~v~~l~~~l~~~ 161 (162)
T cd04106 142 RTSVKDDFNVTELFEYLAEK 161 (162)
T ss_pred EEECCCCCCHHHHHHHHHHh
Confidence 99999999999999999865
No 60
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.96 E-value=1.6e-28 Score=170.98 Aligned_cols=154 Identities=17% Similarity=0.174 Sum_probs=115.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce-eEEEe--CCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEe
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPTS-EELSI--GKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLID 96 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 96 (193)
+||+++|++|||||||++++.++.+.. ..+|..... ..+.. ....+.+|||||++++......++..++++++|+|
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d 81 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYS 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEE
Confidence 799999999999999999999888753 334443222 12222 34678999999999998888888899999999999
Q ss_pred CCChhhHHHHHHHHHHHHhCC--CCCCCcEEEEeeCCCCCCC--CCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEE
Q 029453 97 AYDKERFSESKRELDALLSDE--ALADVPFLILGNKIDIPYA--ASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFM 172 (193)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~--~~~~~pviiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (193)
+++++++.....|+..+.... ...+.|+++|+||+|+.+. ...++... +... ..+.+++
T Consensus 82 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~-~~~~----------------~~~~~~e 144 (165)
T cd04140 82 VTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAA-CATE----------------WNCAFME 144 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHH-HHHH----------------hCCcEEE
Confidence 999999988888776654322 2357999999999999642 22222111 1100 1247899
Q ss_pred EeeecCCChhHHHHhhhhh
Q 029453 173 CSIVRKMGYGEGFKWLSQY 191 (193)
Q Consensus 173 ~Sa~~~~gi~~~~~~i~~~ 191 (193)
|||++|.|++++|++|.+.
T Consensus 145 ~SA~~g~~v~~~f~~l~~~ 163 (165)
T cd04140 145 TSAKTNHNVQELFQELLNL 163 (165)
T ss_pred eecCCCCCHHHHHHHHHhc
Confidence 9999999999999999764
No 61
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.96 E-value=6.9e-28 Score=174.53 Aligned_cols=155 Identities=17% Similarity=0.236 Sum_probs=119.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce--eEEEeC---CeEEEEEEcCChhhhHHhHHhhhccCCEEEEE
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPTS--EELSIG---KIKFKAFDLGGHQMARRVWKDYYAKVDAVVYL 94 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~---~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 94 (193)
+||+++|.+|||||||++++.++.+.. +.+|.+... ..+.++ ...+.+|||||++.+...+..+++.+|++++|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 589999999999999999999888764 445655332 334443 46899999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhCCC--CCCCcEEEEeeCCCCCC--CCCHHHHHHhhCCCccccCCCcccCCCCCCccEEE
Q 029453 95 IDAYDKERFSESKRELDALLSDEA--LADVPFLILGNKIDIPY--AASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEV 170 (193)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~--~~~~pviiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (193)
+|+++++++..+..|+..+..... ..+.|+++|+||+|+.. ....++...... . ..+++
T Consensus 81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~-~----------------~~~~~ 143 (215)
T cd04109 81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQ-A----------------NGMES 143 (215)
T ss_pred EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHH-H----------------cCCEE
Confidence 999999999999888888765432 24578999999999963 222222221111 1 11467
Q ss_pred EEEeeecCCChhHHHHhhhhhc
Q 029453 171 FMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 171 ~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
+++||++|+|++++|++|.+.+
T Consensus 144 ~~iSAktg~gv~~lf~~l~~~l 165 (215)
T cd04109 144 CLVSAKTGDRVNLLFQQLAAEL 165 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 8999999999999999998754
No 62
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.96 E-value=2.2e-28 Score=171.63 Aligned_cols=167 Identities=16% Similarity=0.264 Sum_probs=116.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCcc-ccCCCCCcce-eEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEEEEE
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDERLV-QHQPTQYPTS-EELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVVYLI 95 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 95 (193)
.+||+++|.+|||||||+.++..+.+. .+.+|..... ..+..++ ..+.+|||+|++.+...+..++..+|++|+|+
T Consensus 1 ~~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (174)
T cd01871 1 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF 80 (174)
T ss_pred CeEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence 369999999999999999999988876 4455554322 2333443 67889999999999988888999999999999
Q ss_pred eCCChhhHHHHH-HHHHHHHhCCCCCCCcEEEEeeCCCCCCCC-CHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEE
Q 029453 96 DAYDKERFSESK-RELDALLSDEALADVPFLILGNKIDIPYAA-SEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMC 173 (193)
Q Consensus 96 d~~~~~~~~~~~-~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (193)
|+++++++.... .|+..+... ..+.|+++|+||+|+.... ..+.+..... ...... ....... ..+...+++|
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~--~~~~piilvgnK~Dl~~~~~~~~~~~~~~~-~~v~~~-~~~~~~~-~~~~~~~~e~ 155 (174)
T cd01871 81 SLVSPASFENVRAKWYPEVRHH--CPNTPIILVGTKLDLRDDKDTIEKLKEKKL-TPITYP-QGLAMAK-EIGAVKYLEC 155 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEeeChhhccChhhHHHHhhccC-CCCCHH-HHHHHHH-HcCCcEEEEe
Confidence 999999999986 466655432 2579999999999996321 1111211100 000000 0000000 0122488999
Q ss_pred eeecCCChhHHHHhhhhh
Q 029453 174 SIVRKMGYGEGFKWLSQY 191 (193)
Q Consensus 174 Sa~~~~gi~~~~~~i~~~ 191 (193)
||++|.|++++|+.+.+.
T Consensus 156 Sa~~~~~i~~~f~~l~~~ 173 (174)
T cd01871 156 SALTQKGLKTVFDEAIRA 173 (174)
T ss_pred cccccCCHHHHHHHHHHh
Confidence 999999999999999765
No 63
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.96 E-value=1.1e-27 Score=166.08 Aligned_cols=154 Identities=21% Similarity=0.287 Sum_probs=119.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc--eeEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEEEEE
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPT--SEELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVVYLI 95 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 95 (193)
+||+++|++|||||||++++.++.+.. ..++.+.. ...+..++ ..+.+||+||++.+......+++.+|++++|+
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 589999999999999999999888654 33444332 23334443 57889999999999888889999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC--CCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEE
Q 029453 96 DAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYA--ASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMC 173 (193)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (193)
|+++++++..+..|+..+.. ...++.|+++++||+|+... ...++....... ..++++++
T Consensus 81 d~~~~~s~~~~~~~~~~~~~-~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~ 142 (161)
T cd04113 81 DITNRTSFEALPTWLSDARA-LASPNIVVILVGNKSDLADQREVTFLEASRFAQE-----------------NGLLFLET 142 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHH-hCCCCCeEEEEEEchhcchhccCCHHHHHHHHHH-----------------cCCEEEEE
Confidence 99999999998888887643 33468999999999999632 223332222211 11579999
Q ss_pred eeecCCChhHHHHhhhhhc
Q 029453 174 SIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 174 Sa~~~~gi~~~~~~i~~~l 192 (193)
||+++.|++++|+++.+.+
T Consensus 143 Sa~~~~~i~~~~~~~~~~~ 161 (161)
T cd04113 143 SALTGENVEEAFLKCARSI 161 (161)
T ss_pred ECCCCCCHHHHHHHHHHhC
Confidence 9999999999999998764
No 64
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.96 E-value=5.4e-28 Score=172.00 Aligned_cols=154 Identities=20% Similarity=0.282 Sum_probs=117.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc-eeEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeC
Q 029453 22 KILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPT-SEELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDA 97 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~-~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 97 (193)
||+++|.+|||||||++++..+.+.. +.+|.+.. ...+..++ ..+.+|||||++++...+..+++.+|++++|+|+
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~ 80 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSI 80 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEEC
Confidence 58999999999999999999888764 33444322 23334444 4688999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHhCCC--CCCCcEEEEeeCCCCCCC--CCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEE
Q 029453 98 YDKERFSESKRELDALLSDEA--LADVPFLILGNKIDIPYA--ASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMC 173 (193)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~--~~~~pviiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (193)
++.+++..+..|+..+..... ..+.|+++|+||+|+... ....+.. .+... ..++++++
T Consensus 81 ~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~-~~~~~----------------~~~~~~e~ 143 (190)
T cd04144 81 TSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGA-ALARR----------------LGCEFIEA 143 (190)
T ss_pred CCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHH-HHHHH----------------hCCEEEEe
Confidence 999999999888888765432 257899999999999632 2222211 11100 12478999
Q ss_pred eeecCCChhHHHHhhhhhc
Q 029453 174 SIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 174 Sa~~~~gi~~~~~~i~~~l 192 (193)
||++|.|++++|++|.+++
T Consensus 144 SAk~~~~v~~l~~~l~~~l 162 (190)
T cd04144 144 SAKTNVNVERAFYTLVRAL 162 (190)
T ss_pred cCCCCCCHHHHHHHHHHHH
Confidence 9999999999999998754
No 65
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.96 E-value=4.5e-28 Score=167.38 Aligned_cols=151 Identities=19% Similarity=0.239 Sum_probs=113.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccccC-CCCCcceeEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeC
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLVQHQ-PTQYPTSEELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDA 97 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~-~t~~~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 97 (193)
+||+++|++|||||||++++..+.+.... |+.+.....+..++ ..+.+||++|++.. .+.+.+|++++|+|+
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~~~~-----~~~~~~~~~ilv~d~ 75 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEGGRFKKEVLVDGQSHLLLIRDEGGAPDA-----QFASWVDAVIFVFSL 75 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCccceEEEEEECCEEEEEEEEECCCCCch-----hHHhcCCEEEEEEEC
Confidence 48999999999999999999888776433 33333334556665 56899999999752 345779999999999
Q ss_pred CChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC----CCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEE
Q 029453 98 YDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY----AASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMC 173 (193)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (193)
+++++|+.+..|+..+.......+.|+++|+||+|+.. ..+.++. ..+.... ..+.+++|
T Consensus 76 ~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~-~~~~~~~---------------~~~~~~e~ 139 (158)
T cd04103 76 ENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARA-RQLCADM---------------KRCSYYET 139 (158)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHH-HHHHHHh---------------CCCcEEEE
Confidence 99999999999999887665556799999999999842 2222211 1111111 23689999
Q ss_pred eeecCCChhHHHHhhhhhc
Q 029453 174 SIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 174 Sa~~~~gi~~~~~~i~~~l 192 (193)
||++|.|++++|+.+.+.+
T Consensus 140 SAk~~~~i~~~f~~~~~~~ 158 (158)
T cd04103 140 CATYGLNVERVFQEAAQKI 158 (158)
T ss_pred ecCCCCCHHHHHHHHHhhC
Confidence 9999999999999998653
No 66
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.96 E-value=1.4e-27 Score=165.41 Aligned_cols=154 Identities=19% Similarity=0.286 Sum_probs=119.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCc--ceeEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEEEEE
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYP--TSEELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVVYLI 95 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 95 (193)
+||+++|++|||||||++++.+..+.. ..++.+. ....+..++ ..+.+||+||++.+...+..+++.+|++++|+
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 489999999999999999999888763 3444433 334444544 56899999999999998899999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC--CCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEE
Q 029453 96 DAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYA--ASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMC 173 (193)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (193)
|+++++++.....|+..+..... .+.|+++++||+|+.+. ...++...... . ..+.++++
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~-~~~~iilv~nK~D~~~~~~~~~~~~~~~~~-~----------------~~~~~~~~ 142 (161)
T cd01861 81 DITNRQSFDNTDKWIDDVRDERG-NDVIIVLVGNKTDLSDKRQVSTEEGEKKAK-E----------------LNAMFIET 142 (161)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCC-CCCEEEEEEEChhccccCccCHHHHHHHHH-H----------------hCCEEEEE
Confidence 99999999999988888765432 36999999999999522 22222222211 1 12578999
Q ss_pred eeecCCChhHHHHhhhhhc
Q 029453 174 SIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 174 Sa~~~~gi~~~~~~i~~~l 192 (193)
||+++.|+++++++|.+.+
T Consensus 143 Sa~~~~~v~~l~~~i~~~l 161 (161)
T cd01861 143 SAKAGHNVKELFRKIASAL 161 (161)
T ss_pred eCCCCCCHHHHHHHHHHhC
Confidence 9999999999999998754
No 67
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.96 E-value=1.3e-27 Score=167.11 Aligned_cols=154 Identities=18% Similarity=0.251 Sum_probs=118.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCcc-ccCCCCCcce--eEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEEEEEe
Q 029453 22 KILFLGLDNSGKTTLLHMLKDERLV-QHQPTQYPTS--EELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVVYLID 96 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 96 (193)
||+++|.+|||||||++++.++.+. .+.+|.+... ..+..++ ..+.+|||||++++...+..+++.+|++++|+|
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 7999999999999999999998876 4455655443 2333443 579999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCH---HHHHHhhCCCccccCCCcccCCCCCCccEEEEEE
Q 029453 97 AYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASE---DELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMC 173 (193)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (193)
+++++++.....|+..+.........|+++|+||+|+.+.... ++....+... ...+++++
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~----------------~~~~~~e~ 145 (170)
T cd04108 82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAE----------------MQAEYWSV 145 (170)
T ss_pred CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHH----------------cCCeEEEE
Confidence 9999999999999988865544345789999999998633221 1111111110 11368999
Q ss_pred eeecCCChhHHHHhhhhh
Q 029453 174 SIVRKMGYGEGFKWLSQY 191 (193)
Q Consensus 174 Sa~~~~gi~~~~~~i~~~ 191 (193)
||++|.|++++|+.|.+.
T Consensus 146 Sa~~g~~v~~lf~~l~~~ 163 (170)
T cd04108 146 SALSGENVREFFFRVAAL 163 (170)
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 999999999999998764
No 68
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.96 E-value=1.4e-27 Score=169.95 Aligned_cols=154 Identities=22% Similarity=0.298 Sum_probs=118.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcc--ccCCCCCcce--eEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEEEE
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLV--QHQPTQYPTS--EELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVVYL 94 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~--~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 94 (193)
+||+++|++|||||||++++.++.+. ...+|.+... ..+.+++ ..+.+|||||++.+...+..+++.+|++++|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 58999999999999999999988875 2344544332 2344443 6789999999999988888899999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEE
Q 029453 95 IDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY--AASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFM 172 (193)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (193)
+|+++++++..+..|+..+... ...+.|+++|+||+|+.. ....++..... .. ...++++
T Consensus 81 ~D~~~~~s~~~~~~~~~~i~~~-~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~-~~----------------~~~~~~e 142 (191)
T cd04112 81 YDITNKASFDNIRAWLTEIKEY-AQEDVVIMLLGNKADMSGERVVKREDGERLA-KE----------------YGVPFME 142 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEEcccchhccccCHHHHHHHH-HH----------------cCCeEEE
Confidence 9999999999888888777643 334789999999999962 22333322211 11 1147899
Q ss_pred EeeecCCChhHHHHhhhhhc
Q 029453 173 CSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 173 ~Sa~~~~gi~~~~~~i~~~l 192 (193)
+||++|.|++++|++|.+.+
T Consensus 143 ~Sa~~~~~v~~l~~~l~~~~ 162 (191)
T cd04112 143 TSAKTGLNVELAFTAVAKEL 162 (191)
T ss_pred EeCCCCCCHHHHHHHHHHHH
Confidence 99999999999999998754
No 69
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.96 E-value=8.4e-28 Score=169.71 Aligned_cols=157 Identities=20% Similarity=0.236 Sum_probs=118.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce--eEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEEEEE
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPTS--EELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVVYLI 95 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 95 (193)
+||+++|.+|||||||++++.++.+.. +.+|.+... ..+..++ ..+.+||++|++.+...+..+++++|++++|+
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 589999999999999999999988774 566766543 3455554 67899999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHH---HHHHhhCCCccccCCCcccCCCCCCccEEEEE
Q 029453 96 DAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASED---ELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFM 172 (193)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (193)
|+++++++..+..|+..+... .....| ++|+||+|+.+....+ ...... ... . + ...+++++
T Consensus 81 D~t~~~s~~~i~~~~~~~~~~-~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~-~~~-a--~---------~~~~~~~e 145 (182)
T cd04128 81 DLTRKSTLNSIKEWYRQARGF-NKTAIP-ILVGTKYDLFADLPPEEQEEITKQA-RKY-A--K---------AMKAPLIF 145 (182)
T ss_pred ECcCHHHHHHHHHHHHHHHHh-CCCCCE-EEEEEchhccccccchhhhhhHHHH-HHH-H--H---------HcCCEEEE
Confidence 999999999999998887653 223566 6789999996322111 111100 000 0 0 01257899
Q ss_pred EeeecCCChhHHHHhhhhhc
Q 029453 173 CSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 173 ~Sa~~~~gi~~~~~~i~~~l 192 (193)
+||++|.|++++|++|.+.+
T Consensus 146 ~SAk~g~~v~~lf~~l~~~l 165 (182)
T cd04128 146 CSTSHSINVQKIFKIVLAKA 165 (182)
T ss_pred EeCCCCCCHHHHHHHHHHHH
Confidence 99999999999999997653
No 70
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.96 E-value=9e-28 Score=173.29 Aligned_cols=156 Identities=21% Similarity=0.339 Sum_probs=120.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCcccc-CCCCCcce--eEEEeC---CeEEEEEEcCChhhhHHhHHhhhccCCEEEE
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDERLVQH-QPTQYPTS--EELSIG---KIKFKAFDLGGHQMARRVWKDYYAKVDAVVY 93 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~~~~~~-~~t~~~~~--~~~~~~---~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 93 (193)
.+||+++|++|||||||++++.++.+... .+|.+... ..+... ...+.+|||+|++.+......+++++|++++
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 81 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL 81 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence 58999999999999999999998887643 34544332 233332 3678999999999999888899999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC--CCHHHHHHhhCCCccccCCCcccCCCCCCccEEEE
Q 029453 94 LIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYA--ASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVF 171 (193)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (193)
|+|+++++++..+..|+..+.........|+++|+||+|+... ...++... +... ..+.++
T Consensus 82 v~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~-~~~~----------------~~~~~~ 144 (211)
T cd04111 82 VFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEK-LAKD----------------LGMKYI 144 (211)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHH-HHHH----------------hCCEEE
Confidence 9999999999999999998875544456789999999999642 22222211 1111 125789
Q ss_pred EEeeecCCChhHHHHhhhhhc
Q 029453 172 MCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 172 ~~Sa~~~~gi~~~~~~i~~~l 192 (193)
++||++|.|++++|++|.+.+
T Consensus 145 e~Sak~g~~v~e~f~~l~~~~ 165 (211)
T cd04111 145 ETSARTGDNVEEAFELLTQEI 165 (211)
T ss_pred EEeCCCCCCHHHHHHHHHHHH
Confidence 999999999999999998754
No 71
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.96 E-value=5.4e-28 Score=167.67 Aligned_cols=151 Identities=18% Similarity=0.246 Sum_probs=115.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcccc-CCCCCccee--EEEeC--CeEEEEEEcCChhhhHHhHHhhhccCCEEEEEE
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLVQH-QPTQYPTSE--ELSIG--KIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLI 95 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~~~-~~t~~~~~~--~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 95 (193)
+||+++|.+|||||||++++.++.+... .++...... ....+ ...+.+|||+|++.+...+..+++.+|++++|+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 5899999999999999999998887643 233333221 22333 457889999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEee
Q 029453 96 DAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSI 175 (193)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 175 (193)
|++++.++.....|+..+... ..+.|+++|+||+|+.+.. ..+.. .+.. . ..++++++||
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~--~~~~p~ivv~nK~Dl~~~~-~~~~~-~~~~-~---------------~~~~~~~~Sa 140 (161)
T cd04124 81 DVTRKITYKNLSKWYEELREY--RPEIPCIVVANKIDLDPSV-TQKKF-NFAE-K---------------HNLPLYYVSA 140 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHh--CCCCcEEEEEECccCchhH-HHHHH-HHHH-H---------------cCCeEEEEeC
Confidence 999999998888888887542 2478999999999985321 11111 1100 0 1247899999
Q ss_pred ecCCChhHHHHhhhhh
Q 029453 176 VRKMGYGEGFKWLSQY 191 (193)
Q Consensus 176 ~~~~gi~~~~~~i~~~ 191 (193)
++|.|++++|+.+.+.
T Consensus 141 ~~~~gv~~l~~~l~~~ 156 (161)
T cd04124 141 ADGTNVVKLFQDAIKL 156 (161)
T ss_pred CCCCCHHHHHHHHHHH
Confidence 9999999999998764
No 72
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1e-27 Score=155.10 Aligned_cols=174 Identities=32% Similarity=0.575 Sum_probs=157.0
Q ss_pred HHHHHHHHhCCCCcccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCeEEEEEEcCChhhhHHhHHhhh
Q 029453 6 WFYGILVSLGLWQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMARRVWKDYY 85 (193)
Q Consensus 6 ~~~~~~~~~~~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~ 85 (193)
+++-+.++. +..++++|..+|-.++||||++..+..+....+.||.+.+.+++.+.+..+..||.+|++..+..|.+|+
T Consensus 4 ~~sk~~~k~-f~~KE~~ilmlGLd~aGKTtiLyKLkl~~~~~~ipTvGFnvetVtykN~kfNvwdvGGqd~iRplWrhYy 82 (180)
T KOG0071|consen 4 YMSKLLSKI-FGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYY 82 (180)
T ss_pred hHHHHHHHH-hCcccceEEEEecccCCceehhhHHhcCCCcccccccceeEEEEEeeeeEEeeeeccCchhhhHHHHhhc
Confidence 344344333 5677999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCC
Q 029453 86 AKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNV 165 (193)
Q Consensus 86 ~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (193)
....++|||+|+++.+.+++....+..+++.....+.|+++..||-|++.+-.++|+.+.+++...+.
T Consensus 83 ~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leLe~~r~------------ 150 (180)
T KOG0071|consen 83 TGTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLELERIRD------------ 150 (180)
T ss_pred cCCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhccccccC------------
Confidence 99999999999999999999999999999888778999999999999999999999999998877321
Q ss_pred ccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 166 RPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 166 ~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
+.|-+++++|.+|.|+.|-+.||.+-+
T Consensus 151 ~~W~vqp~~a~~gdgL~eglswlsnn~ 177 (180)
T KOG0071|consen 151 RNWYVQPSCALSGDGLKEGLSWLSNNL 177 (180)
T ss_pred CccEeeccccccchhHHHHHHHHHhhc
Confidence 568999999999999999999998765
No 73
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.96 E-value=1.9e-27 Score=166.31 Aligned_cols=158 Identities=23% Similarity=0.300 Sum_probs=120.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc--eeEEEeCC--eEEEEEEcCChhhhH-HhHHhhhccCCEEEE
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPT--SEELSIGK--IKFKAFDLGGHQMAR-RVWKDYYAKVDAVVY 93 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~-~~~~~~~~~~d~ii~ 93 (193)
.+||+++|++|||||||++++..+.+.. +.++.+.. ...+..++ ..+.+||++|++.+. ..+..+++++|++++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~ 81 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF 81 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence 5799999999999999999999888663 34444332 23344444 688999999999886 467788899999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC-HHHHHHhhCCCccccCCCcccCCCCCCccEEEEE
Q 029453 94 LIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAAS-EDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFM 172 (193)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (193)
|+|++++++++....|+..+.......+.|+++|+||+|+..... ..+....+... ..+++++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~----------------~~~~~~e 145 (170)
T cd04115 82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADA----------------HSMPLFE 145 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHH----------------cCCcEEE
Confidence 999999999999999888876654456799999999999863221 11222222111 1257899
Q ss_pred Eeeec---CCChhHHHHhhhhhcC
Q 029453 173 CSIVR---KMGYGEGFKWLSQYIK 193 (193)
Q Consensus 173 ~Sa~~---~~gi~~~~~~i~~~l~ 193 (193)
+||++ +.|++++|..+.+.++
T Consensus 146 ~Sa~~~~~~~~i~~~f~~l~~~~~ 169 (170)
T cd04115 146 TSAKDPSENDHVEAIFMTLAHKLK 169 (170)
T ss_pred EeccCCcCCCCHHHHHHHHHHHhh
Confidence 99999 8999999999987763
No 74
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.96 E-value=3.1e-27 Score=164.94 Aligned_cols=156 Identities=21% Similarity=0.257 Sum_probs=120.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCcccc-CCCCCcc--eeEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEEE
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERLVQH-QPTQYPT--SEELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVVY 93 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~~~~-~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 93 (193)
.-+||+++|.+|||||||++++.+..+... .++.+.. ...+..++ ..+.+||+||++++......+++.+|++++
T Consensus 3 ~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~ 82 (168)
T cd01866 3 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALL 82 (168)
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEE
Confidence 347999999999999999999998876643 3343332 23344443 578999999999998888889999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEE
Q 029453 94 LIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY--AASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVF 171 (193)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (193)
|+|++++.++..+..|+..+.... .++.|+++|+||+|+.. ....++....... ..+.++
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~ 144 (168)
T cd01866 83 VYDITRRETFNHLTSWLEDARQHS-NSNMTIMLIGNKCDLESRREVSYEEGEAFAKE-----------------HGLIFM 144 (168)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECcccccccCCCHHHHHHHHHH-----------------cCCEEE
Confidence 999999999999999888885532 36799999999999973 2333333322211 124689
Q ss_pred EEeeecCCChhHHHHhhhhhc
Q 029453 172 MCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 172 ~~Sa~~~~gi~~~~~~i~~~l 192 (193)
++||+++.|++++|+++.+.+
T Consensus 145 e~Sa~~~~~i~~~~~~~~~~~ 165 (168)
T cd01866 145 ETSAKTASNVEEAFINTAKEI 165 (168)
T ss_pred EEeCCCCCCHHHHHHHHHHHH
Confidence 999999999999999998764
No 75
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.96 E-value=1.3e-27 Score=166.05 Aligned_cols=154 Identities=19% Similarity=0.340 Sum_probs=116.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC--Ccc-ccCCCCCcce--eEEEe---CCeEEEEEEcCChhhhHHhHHhhhccCCEEE
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDE--RLV-QHQPTQYPTS--EELSI---GKIKFKAFDLGGHQMARRVWKDYYAKVDAVV 92 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~--~~~-~~~~t~~~~~--~~~~~---~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 92 (193)
+||+++|++|||||||++++... .+. .+.+|.+... ..+.. ....+.+|||||++.+..+...++..+|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 58999999999999999999864 343 3444554433 22222 3478999999999999988899999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHH-HHHHhhCCCccccCCCcccCCCCCCccEEEE
Q 029453 93 YLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASED-ELRYHMGLTNFTTGKGNVNLDNTNVRPLEVF 171 (193)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (193)
+|+|+++++++.....|+..+.... .+.|+++|+||+|+.+..... +....+... ..++++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~----------------~~~~~~ 142 (164)
T cd04101 81 LVYDVSNKASFENCSRWVNKVRTAS--KHMPGVLVGNKMDLADKAEVTDAQAQAFAQA----------------NQLKFF 142 (164)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccCCCHHHHHHHHHH----------------cCCeEE
Confidence 9999999999988888888775432 568999999999996432211 111111111 124689
Q ss_pred EEeeecCCChhHHHHhhhhhc
Q 029453 172 MCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 172 ~~Sa~~~~gi~~~~~~i~~~l 192 (193)
++||++|.|++++|++|.+.+
T Consensus 143 ~~Sa~~~~gi~~l~~~l~~~~ 163 (164)
T cd04101 143 KTSALRGVGYEEPFESLARAF 163 (164)
T ss_pred EEeCCCCCChHHHHHHHHHHh
Confidence 999999999999999998764
No 76
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.96 E-value=3e-27 Score=163.83 Aligned_cols=155 Identities=22% Similarity=0.307 Sum_probs=121.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce--eEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEEEEE
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPTS--EELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVVYLI 95 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 95 (193)
+||+++|++|||||||++++.+..+.. ..++.+... ..+..++ ..+.+||+||++.+......+++.+|++++|+
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 589999999999999999999888753 445544332 2333443 67899999999999888888899999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC-CCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEe
Q 029453 96 DAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIP-YAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCS 174 (193)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 174 (193)
|+++++++.....|+..+.......+.|+++|+||+|+. +....++....... ..++++++|
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~~~~~~~~~-----------------~~~~~~~~S 143 (161)
T cd01863 81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVTREEGLKFARK-----------------HNMLFIETS 143 (161)
T ss_pred ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccccCHHHHHHHHHH-----------------cCCEEEEEe
Confidence 999999999888888877665556789999999999997 33333332222111 125789999
Q ss_pred eecCCChhHHHHhhhhhc
Q 029453 175 IVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 175 a~~~~gi~~~~~~i~~~l 192 (193)
|++|.|++++++++.+++
T Consensus 144 a~~~~gi~~~~~~~~~~~ 161 (161)
T cd01863 144 AKTRDGVQQAFEELVEKI 161 (161)
T ss_pred cCCCCCHHHHHHHHHHhC
Confidence 999999999999998764
No 77
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.96 E-value=7.3e-28 Score=168.13 Aligned_cols=157 Identities=17% Similarity=0.249 Sum_probs=120.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc-eeEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEEEEE
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPT-SEELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVVYLI 95 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~-~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 95 (193)
++||+++|++|||||||++++.++.+.. +.+|.... ...+..++ ..+.+||+||++++..++..+++.++++++|+
T Consensus 1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~ 80 (168)
T cd04177 1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY 80 (168)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence 4799999999999999999999888764 34444322 23334443 67899999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC--CCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEE
Q 029453 96 DAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYA--ASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMC 173 (193)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (193)
|.+++++++....|...+.+.....+.|+++++||+|+... ...++... +.... ...+++++
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~-~~~~~---------------~~~~~~~~ 144 (168)
T cd04177 81 SVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVS-LSQQW---------------GNVPFYET 144 (168)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHH-HHHHc---------------CCceEEEe
Confidence 99999999998888887765444568999999999998632 22222211 11111 22578999
Q ss_pred eeecCCChhHHHHhhhhhc
Q 029453 174 SIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 174 Sa~~~~gi~~~~~~i~~~l 192 (193)
||++|.|++++|++|..++
T Consensus 145 SA~~~~~i~~~f~~i~~~~ 163 (168)
T cd04177 145 SARKRTNVDEVFIDLVRQI 163 (168)
T ss_pred eCCCCCCHHHHHHHHHHHH
Confidence 9999999999999998754
No 78
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.96 E-value=4.5e-28 Score=170.45 Aligned_cols=166 Identities=19% Similarity=0.241 Sum_probs=115.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce-eEEEeC--CeEEEEEEcCChhhhHHhHHhhhccCCEEEEEE
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPTS-EELSIG--KIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLI 95 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 95 (193)
++||+++|.+|||||||++++.++.+.. +.||.+... ..+..+ ...+.+|||+|++.+......++..+|++++|+
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvf 80 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICF 80 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEE
Confidence 4699999999999999999999988763 445554332 233344 367899999999999888888999999999999
Q ss_pred eCCChhhHHHH-HHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC-HHHHHHhhCCCccccCCCcccCCCCCCccEEEEEE
Q 029453 96 DAYDKERFSES-KRELDALLSDEALADVPFLILGNKIDIPYAAS-EDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMC 173 (193)
Q Consensus 96 d~~~~~~~~~~-~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (193)
|++++++|..+ ..|+..+... . ++.|+++|+||+||..... ..++... ........ .....+. ......+++|
T Consensus 81 dit~~~Sf~~~~~~w~~~i~~~-~-~~~~iilVgnK~DL~~~~~~~~~~~~~-~~~~v~~~-e~~~~a~-~~~~~~~~E~ 155 (178)
T cd04131 81 DISRPETLDSVLKKWRGEIQEF-C-PNTKVLLVGCKTDLRTDLSTLMELSHQ-RQAPVSYE-QGCAIAK-QLGAEIYLEC 155 (178)
T ss_pred ECCChhhHHHHHHHHHHHHHHH-C-CCCCEEEEEEChhhhcChhHHHHHHhc-CCCCCCHH-HHHHHHH-HhCCCEEEEC
Confidence 99999999986 6777777543 2 5799999999999953210 0000000 00000000 0000000 0012378999
Q ss_pred eeecCCC-hhHHHHhhhh
Q 029453 174 SIVRKMG-YGEGFKWLSQ 190 (193)
Q Consensus 174 Sa~~~~g-i~~~~~~i~~ 190 (193)
||++|+| ++++|..+.+
T Consensus 156 SA~~~~~~v~~~F~~~~~ 173 (178)
T cd04131 156 SAFTSEKSVRDIFHVATM 173 (178)
T ss_pred ccCcCCcCHHHHHHHHHH
Confidence 9999995 9999999876
No 79
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.96 E-value=3.9e-27 Score=173.23 Aligned_cols=155 Identities=21% Similarity=0.273 Sum_probs=122.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCc-ceeEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEEEEEe
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYP-TSEELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVVYLID 96 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~-~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 96 (193)
+||+++|.+|||||||++++.++.+.. +.+|.+. ....+.+++ +.+.+|||+|++.+..+...++..+|++|+|+|
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfd 80 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFS 80 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEEe
Confidence 589999999999999999999888764 4455542 233445554 678899999999888877778889999999999
Q ss_pred CCChhhHHHHHHHHHHHHhCC--------CCCCCcEEEEeeCCCCC--CCCCHHHHHHhhCCCccccCCCcccCCCCCCc
Q 029453 97 AYDKERFSESKRELDALLSDE--------ALADVPFLILGNKIDIP--YAASEDELRYHMGLTNFTTGKGNVNLDNTNVR 166 (193)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~--------~~~~~pviiv~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (193)
+++.++|+....|+..+.... ...+.|+++|+||+|+. +....+++.+..... .
T Consensus 81 v~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~----------------~ 144 (247)
T cd04143 81 LDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGD----------------E 144 (247)
T ss_pred CCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhc----------------C
Confidence 999999999988888886431 23579999999999996 344555554444321 1
Q ss_pred cEEEEEEeeecCCChhHHHHhhhhh
Q 029453 167 PLEVFMCSIVRKMGYGEGFKWLSQY 191 (193)
Q Consensus 167 ~~~~~~~Sa~~~~gi~~~~~~i~~~ 191 (193)
.+.++++||++|.|++++|++|...
T Consensus 145 ~~~~~evSAktg~gI~elf~~L~~~ 169 (247)
T cd04143 145 NCAYFEVSAKKNSNLDEMFRALFSL 169 (247)
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 2579999999999999999999764
No 80
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.96 E-value=1.5e-27 Score=173.26 Aligned_cols=168 Identities=19% Similarity=0.249 Sum_probs=116.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce-eEEEeC--CeEEEEEEcCChhhhHHhHHhhhccCCEEEEE
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPTS-EELSIG--KIKFKAFDLGGHQMARRVWKDYYAKVDAVVYL 94 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 94 (193)
..+||+++|.+|||||||++++..+.+.. +.||.+... ..+..+ ...+.+|||+|++.+..+...++..+|++++|
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIlV 91 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLC 91 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEEE
Confidence 57899999999999999999999988773 455654433 223333 36799999999999999889999999999999
Q ss_pred EeCCChhhHHHH-HHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCH-HHHHHhhCCCccccCCCcccCCCCCCccEEEEE
Q 029453 95 IDAYDKERFSES-KRELDALLSDEALADVPFLILGNKIDIPYAASE-DELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFM 172 (193)
Q Consensus 95 ~d~~~~~~~~~~-~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (193)
+|++++++|... ..|+..+.... ++.|+++|+||+|+...... .++.... ....... .....+. ......+++
T Consensus 92 yDit~~~Sf~~~~~~w~~~i~~~~--~~~piilVgNK~DL~~~~~~~~~l~~~~-~~~Vs~~-e~~~~a~-~~~~~~~~E 166 (232)
T cd04174 92 FDISRPETVDSALKKWKAEIMDYC--PSTRILLIGCKTDLRTDLSTLMELSNQK-QAPISYE-QGCALAK-QLGAEVYLE 166 (232)
T ss_pred EECCChHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccchhhhhcccc-CCcCCHH-HHHHHHH-HcCCCEEEE
Confidence 999999999874 67777775432 47899999999998532110 0000000 0000000 0000000 001125899
Q ss_pred EeeecCC-ChhHHHHhhhhh
Q 029453 173 CSIVRKM-GYGEGFKWLSQY 191 (193)
Q Consensus 173 ~Sa~~~~-gi~~~~~~i~~~ 191 (193)
|||++|+ |++++|+.+...
T Consensus 167 tSAktg~~~V~e~F~~~~~~ 186 (232)
T cd04174 167 CSAFTSEKSIHSIFRSASLL 186 (232)
T ss_pred ccCCcCCcCHHHHHHHHHHH
Confidence 9999998 899999998654
No 81
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.96 E-value=6.1e-28 Score=171.58 Aligned_cols=168 Identities=19% Similarity=0.314 Sum_probs=118.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce-eEEEeC--CeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEe
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPTS-EELSIG--KIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLID 96 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 96 (193)
.||+++|++|||||||++++.++.+.. +.+|.+... ..+..+ ...+.+|||+|++.+...+..++..++++++|+|
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~d 80 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFS 80 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeEEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEE
Confidence 389999999999999999999988764 445554332 223333 3679999999999988888888899999999999
Q ss_pred CCChhhHHHHH-HHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEee
Q 029453 97 AYDKERFSESK-RELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSI 175 (193)
Q Consensus 97 ~~~~~~~~~~~-~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 175 (193)
++++++++... .|+..+... ..+.|+++|+||+|+.......+................ .... ....+.+++|||
T Consensus 81 v~~~~sf~~~~~~~~~~i~~~--~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~-~~~~-~~~~~~~~e~SA 156 (189)
T cd04134 81 VDSPDSLENVESKWLGEIREH--CPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGL-AVAK-RINALRYLECSA 156 (189)
T ss_pred CCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHH-HHHH-HcCCCEEEEccC
Confidence 99999998876 466666532 257999999999999754332222111111110000000 0000 012367999999
Q ss_pred ecCCChhHHHHhhhhhc
Q 029453 176 VRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 176 ~~~~gi~~~~~~i~~~l 192 (193)
++|.|++++|++|.+.+
T Consensus 157 k~~~~v~e~f~~l~~~~ 173 (189)
T cd04134 157 KLNRGVNEAFTEAARVA 173 (189)
T ss_pred CcCCCHHHHHHHHHHHH
Confidence 99999999999998653
No 82
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.96 E-value=4.8e-27 Score=163.04 Aligned_cols=155 Identities=18% Similarity=0.283 Sum_probs=120.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce-eEEEeC--CeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEe
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPTS-EELSIG--KIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLID 96 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 96 (193)
+||+++|++|||||||++++....+.. ..++..... .....+ ...+.+||+||+..+......+++.++++++|+|
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 80 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFS 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEE
Confidence 589999999999999999999887763 333333222 223333 3679999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEe
Q 029453 97 AYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY--AASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCS 174 (193)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 174 (193)
.+++.++.....++..+.......++|+++|+||+|+.. .....+....... ...+++++|
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~S 143 (164)
T cd04139 81 ITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQ-----------------WGVPYVETS 143 (164)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHH-----------------hCCeEEEee
Confidence 999999999999988888765556899999999999964 2222222221111 114789999
Q ss_pred eecCCChhHHHHhhhhhc
Q 029453 175 IVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 175 a~~~~gi~~~~~~i~~~l 192 (193)
|++|.|++++|++|.+++
T Consensus 144 a~~~~gi~~l~~~l~~~~ 161 (164)
T cd04139 144 AKTRQNVEKAFYDLVREI 161 (164)
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 999999999999998765
No 83
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.96 E-value=3.7e-27 Score=164.94 Aligned_cols=155 Identities=20% Similarity=0.366 Sum_probs=118.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcccc-CCCCCcc--eeEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEEEEE
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLVQH-QPTQYPT--SEELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVVYLI 95 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~~~-~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 95 (193)
+||+++|++|||||||++++.+..+... .++.+.. ...+..++ ..+.+||+||++.+...+..+++.+|++++|+
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 5899999999999999999998876532 3343322 23344444 56789999999999888889999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhCCC---CCCCcEEEEeeCCCCCC--CCCHHHHHHhhCCCccccCCCcccCCCCCCccEEE
Q 029453 96 DAYDKERFSESKRELDALLSDEA---LADVPFLILGNKIDIPY--AASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEV 170 (193)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~---~~~~pviiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (193)
|+++++++.....|...+..... ..++|+++|+||+|+.. ....++....... . ...++
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~-~---------------~~~~~ 144 (172)
T cd01862 81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQS-N---------------GNIPY 144 (172)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHH-c---------------CCceE
Confidence 99999888888777776654432 24799999999999973 3334443332221 1 23589
Q ss_pred EEEeeecCCChhHHHHhhhhh
Q 029453 171 FMCSIVRKMGYGEGFKWLSQY 191 (193)
Q Consensus 171 ~~~Sa~~~~gi~~~~~~i~~~ 191 (193)
+++|+++|.|+++++++|.+.
T Consensus 145 ~~~Sa~~~~gv~~l~~~i~~~ 165 (172)
T cd01862 145 FETSAKEAINVEQAFETIARK 165 (172)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 999999999999999999864
No 84
>PLN03118 Rab family protein; Provisional
Probab=99.96 E-value=7.2e-27 Score=168.81 Aligned_cols=159 Identities=21% Similarity=0.291 Sum_probs=120.8
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcce--eEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEE
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTS--EELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVV 92 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 92 (193)
....+||+++|++|||||||++++.+..+....++.+... ..+..++ ..+.+|||||++++...+..+++.+|+++
T Consensus 11 ~~~~~kv~ivG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~v 90 (211)
T PLN03118 11 YDLSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGII 90 (211)
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHhCCCCCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence 4568899999999999999999999888766656655432 3344443 57899999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhC-CCCCCCcEEEEeeCCCCCCC--CCHHHHHHhhCCCccccCCCcccCCCCCCccEE
Q 029453 93 YLIDAYDKERFSESKRELDALLSD-EALADVPFLILGNKIDIPYA--ASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLE 169 (193)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~~pviiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (193)
+|+|+++++++......+...+.. ....+.|+++|+||+|+... ...++....... ..+.
T Consensus 91 lv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~-----------------~~~~ 153 (211)
T PLN03118 91 LVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKE-----------------HGCL 153 (211)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHH-----------------cCCE
Confidence 999999999999887655444333 22356899999999999633 222222211111 1246
Q ss_pred EEEEeeecCCChhHHHHhhhhhc
Q 029453 170 VFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 170 ~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
++++||+++.|++++|++|.+.+
T Consensus 154 ~~e~SAk~~~~v~~l~~~l~~~~ 176 (211)
T PLN03118 154 FLECSAKTRENVEQCFEELALKI 176 (211)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHH
Confidence 89999999999999999998654
No 85
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.4e-27 Score=161.64 Aligned_cols=153 Identities=21% Similarity=0.284 Sum_probs=127.4
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccccCC-CCCc----ceeEEEeCCeEEEEEEcCChhhhHHhHHhhhccCCEE
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQP-TQYP----TSEELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAV 91 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~-t~~~----~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~i 91 (193)
....+|+.++|..|+|||+|+.++....+.+..+ |.+. ....++.....+.+|||.||+.|++....|++.+.++
T Consensus 3 ~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Ga 82 (216)
T KOG0098|consen 3 YAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGA 82 (216)
T ss_pred ccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcce
Confidence 4467899999999999999999999999886554 4443 3344555568899999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC--CCCCHHH---HHHhhCCCccccCCCcccCCCCCCc
Q 029453 92 VYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIP--YAASEDE---LRYHMGLTNFTTGKGNVNLDNTNVR 166 (193)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~--~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (193)
++|+|++++++|..+..|+.++.+ ....+..+++++||+||. +..+.+| +.++.++.+
T Consensus 83 lLVydit~r~sF~hL~~wL~D~rq-~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLif---------------- 145 (216)
T KOG0098|consen 83 LLVYDITRRESFNHLTSWLEDARQ-HSNENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLIF---------------- 145 (216)
T ss_pred EEEEEccchhhHHHHHHHHHHHHH-hcCCCcEEEEEcchhhhhccccccHHHHHHHHHHcCcee----------------
Confidence 999999999999999999999964 445789999999999997 5555555 555555554
Q ss_pred cEEEEEEeeecCCChhHHHHhhhh
Q 029453 167 PLEVFMCSIVRKMGYGEGFKWLSQ 190 (193)
Q Consensus 167 ~~~~~~~Sa~~~~gi~~~~~~i~~ 190 (193)
.++||++++|++|.|-.+..
T Consensus 146 ----mETSakt~~~VEEaF~nta~ 165 (216)
T KOG0098|consen 146 ----METSAKTAENVEEAFINTAK 165 (216)
T ss_pred ----ehhhhhhhhhHHHHHHHHHH
Confidence 68999999999999987654
No 86
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.96 E-value=4e-27 Score=163.08 Aligned_cols=154 Identities=23% Similarity=0.364 Sum_probs=117.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc--eeEEEeC--CeEEEEEEcCChhhhHHhHHhhhccCCEEEEEE
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPT--SEELSIG--KIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLI 95 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 95 (193)
+||+++|++|+|||||++++.++.+.. ..++.... ...+... ...+.+||+||++.+...+..+++.+|++++|+
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 589999999999999999999887753 22333222 2233333 357899999999999888888899999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC--CCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEE
Q 029453 96 DAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYA--ASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMC 173 (193)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (193)
|+++++++.....|+..+..... .++|+++++||+|+... ...++....... ....++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~ 142 (162)
T cd04123 81 DITDADSFQKVKKWIKELKQMRG-NNISLVIVGNKIDLERQRVVSKSEAEEYAKS-----------------VGAKHFET 142 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECcccccccCCCHHHHHHHHHH-----------------cCCEEEEE
Confidence 99999999888888877755432 37999999999998732 223333322211 12467999
Q ss_pred eeecCCChhHHHHhhhhhc
Q 029453 174 SIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 174 Sa~~~~gi~~~~~~i~~~l 192 (193)
|+++++|++++++||.+.+
T Consensus 143 s~~~~~gi~~~~~~l~~~~ 161 (162)
T cd04123 143 SAKTGKGIEELFLSLAKRM 161 (162)
T ss_pred eCCCCCCHHHHHHHHHHHh
Confidence 9999999999999998764
No 87
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.96 E-value=8.9e-27 Score=161.77 Aligned_cols=154 Identities=23% Similarity=0.343 Sum_probs=118.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc--eeEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEEEEE
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPT--SEELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVVYLI 95 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 95 (193)
+||+++|++|||||||++++.+..+.. ..++.+.. ...+..++ ..+.+||+||++.+......++..+|++++|+
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 589999999999999999999887653 33443332 23444544 57889999999999988899999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC--CCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEE
Q 029453 96 DAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYA--ASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMC 173 (193)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (193)
|++++.+++.+..|+..+.... ..++|+++++||+|+.+. ...++...... . ..++++++
T Consensus 81 d~~~~~s~~~~~~~l~~~~~~~-~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~-~----------------~~~~~~e~ 142 (164)
T smart00175 81 DITNRESFENLKNWLKELREYA-DPNVVIMLVGNKSDLEDQRQVSREEAEAFAE-E----------------HGLPFFET 142 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEEchhcccccCCCHHHHHHHHH-H----------------cCCeEEEE
Confidence 9999999998888888775433 258999999999998742 23233322211 1 12468999
Q ss_pred eeecCCChhHHHHhhhhhc
Q 029453 174 SIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 174 Sa~~~~gi~~~~~~i~~~l 192 (193)
||++|.|+++++++|.+.+
T Consensus 143 Sa~~~~~i~~l~~~i~~~~ 161 (164)
T smart00175 143 SAKTNTNVEEAFEELAREI 161 (164)
T ss_pred eCCCCCCHHHHHHHHHHHH
Confidence 9999999999999998764
No 88
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.95 E-value=5e-27 Score=166.61 Aligned_cols=154 Identities=16% Similarity=0.209 Sum_probs=114.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce-eEEEeC---CeEEEEEEcCChhhhHHhHHhhhccCCEEEEEE
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPTS-EELSIG---KIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLI 95 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~~---~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 95 (193)
+||+++|++|||||||++++.++.+.. +.+|.+... ..+... ...+.+|||||++++...+..+++.+|++++|+
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~ 80 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLICY 80 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEEE
Confidence 589999999999999999999988763 334443332 223332 367899999999999888888899999999999
Q ss_pred eCCChhhHHHHHH-HHHHHHhCCCCCCCcEEEEeeCCCCCCCC------CHHHHHHhhCCCccccCCCcccCCCCCCccE
Q 029453 96 DAYDKERFSESKR-ELDALLSDEALADVPFLILGNKIDIPYAA------SEDELRYHMGLTNFTTGKGNVNLDNTNVRPL 168 (193)
Q Consensus 96 d~~~~~~~~~~~~-~~~~~~~~~~~~~~pviiv~nK~Dl~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (193)
|++++++++.+.. |+..+... ..+.|+++|+||+|+.... ..++..+... .. ...
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~-~~---------------~~~ 142 (187)
T cd04132 81 AVDNPTSLDNVEDKWFPEVNHF--CPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAK-KQ---------------GAF 142 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHH-Hc---------------CCc
Confidence 9999999988764 65555322 2578999999999996432 1222111111 11 123
Q ss_pred EEEEEeeecCCChhHHHHhhhhhc
Q 029453 169 EVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 169 ~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
+++++||++|.|++++|+.+.+.+
T Consensus 143 ~~~e~Sa~~~~~v~~~f~~l~~~~ 166 (187)
T cd04132 143 AYLECSAKTMENVEEVFDTAIEEA 166 (187)
T ss_pred EEEEccCCCCCCHHHHHHHHHHHH
Confidence 789999999999999999997653
No 89
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.95 E-value=3.3e-27 Score=167.69 Aligned_cols=154 Identities=21% Similarity=0.297 Sum_probs=118.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc--eeEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEEEEE
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPT--SEELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVVYLI 95 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 95 (193)
+||+++|++|||||||++++.++.+.. +.+|.+.. ...+..++ ..+.+||+||++.+...+..+++.+|++++|+
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 589999999999999999999988764 45555433 23344433 57889999999999988899999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCC--CHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEE
Q 029453 96 DAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAA--SEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMC 173 (193)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (193)
|+++++++..+..|+..+... ...+.|+++++||+|+.+.. ..++.. .+... ..++++++
T Consensus 81 d~~~~~s~~~i~~~~~~i~~~-~~~~~~~ivv~nK~Dl~~~~~v~~~~~~-~~~~~----------------~~~~~~ev 142 (188)
T cd04125 81 DVTDQESFENLKFWINEINRY-ARENVIKVIVANKSDLVNNKVVDSNIAK-SFCDS----------------LNIPFFET 142 (188)
T ss_pred ECcCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECCCCcccccCCHHHHH-HHHHH----------------cCCeEEEE
Confidence 999999999999988887643 23468999999999987322 222221 11110 12378999
Q ss_pred eeecCCChhHHHHhhhhhc
Q 029453 174 SIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 174 Sa~~~~gi~~~~~~i~~~l 192 (193)
||++|.|++++|++|.+.+
T Consensus 143 Sa~~~~~i~~~f~~l~~~~ 161 (188)
T cd04125 143 SAKQSINVEEAFILLVKLI 161 (188)
T ss_pred eCCCCCCHHHHHHHHHHHH
Confidence 9999999999999997754
No 90
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.95 E-value=3.4e-27 Score=170.63 Aligned_cols=167 Identities=20% Similarity=0.279 Sum_probs=116.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCcc-ccCCCCCcce-eEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEEEEE
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDERLV-QHQPTQYPTS-EELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVVYLI 95 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 95 (193)
++||+++|.+|||||||++++..+.+. .+.||.+... ..+..++ ..+.+|||+|++.+......++..+|++++|+
T Consensus 1 ~~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvf 80 (222)
T cd04173 1 RCKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICF 80 (222)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEE
Confidence 369999999999999999999998877 4556665443 2344443 67889999999999999899999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCH-HHHHHhhCCCccccCCCcccCCCCCCccEEEEEEe
Q 029453 96 DAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASE-DELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCS 174 (193)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 174 (193)
|+++++++..+..+|....... .++.|+++|+||+|+...... .++... ...... ......++. ......+++||
T Consensus 81 dis~~~Sf~~i~~~w~~~~~~~-~~~~piiLVgnK~DL~~~~~~~~~~~~~-~~~pIs-~e~g~~~ak-~~~~~~y~E~S 156 (222)
T cd04173 81 DISRPETLDSVLKKWQGETQEF-CPNAKVVLVGCKLDMRTDLATLRELSKQ-RLIPVT-HEQGTVLAK-QVGAVSYVECS 156 (222)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEEECcccccchhhhhhhhhc-cCCccC-HHHHHHHHH-HcCCCEEEEcC
Confidence 9999999999865444443332 357999999999999643211 111110 000000 000000010 01224899999
Q ss_pred eecCCC-hhHHHHhhhh
Q 029453 175 IVRKMG-YGEGFKWLSQ 190 (193)
Q Consensus 175 a~~~~g-i~~~~~~i~~ 190 (193)
|+++.| ++++|+....
T Consensus 157 Ak~~~~~V~~~F~~~~~ 173 (222)
T cd04173 157 SRSSERSVRDVFHVATV 173 (222)
T ss_pred CCcCCcCHHHHHHHHHH
Confidence 999985 9999998765
No 91
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.95 E-value=3.2e-27 Score=168.55 Aligned_cols=147 Identities=17% Similarity=0.323 Sum_probs=115.1
Q ss_pred EcCCCCCHHHHHHHHhcCCccc-cCCCCCccee--EEEe--CCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCCh
Q 029453 26 LGLDNSGKTTLLHMLKDERLVQ-HQPTQYPTSE--ELSI--GKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDK 100 (193)
Q Consensus 26 ~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~ 100 (193)
+|.+|||||||++++..+.+.. +.+|.+.... .+.. ....+.+|||+|++++..++..+++.++++|+|+|++++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 5999999999999999888763 4566654433 2333 347899999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC-CCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeeecCC
Q 029453 101 ERFSESKRELDALLSDEALADVPFLILGNKIDIPYA-ASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKM 179 (193)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 179 (193)
.++..+..|+..+.+.. .+.|+++|+||+|+... ...++. . +. . ...+.+++|||++|.
T Consensus 81 ~S~~~i~~w~~~i~~~~--~~~piilvgNK~Dl~~~~v~~~~~-~-~~--~--------------~~~~~~~e~SAk~~~ 140 (200)
T smart00176 81 VTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDVKDRKVKAKSI-T-FH--R--------------KKNLQYYDISAKSNY 140 (200)
T ss_pred HHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccCCHHHH-H-HH--H--------------HcCCEEEEEeCCCCC
Confidence 99999988888886532 57999999999998632 222211 1 10 0 023689999999999
Q ss_pred ChhHHHHhhhhhc
Q 029453 180 GYGEGFKWLSQYI 192 (193)
Q Consensus 180 gi~~~~~~i~~~l 192 (193)
|++++|++|.+.+
T Consensus 141 ~v~~~F~~l~~~i 153 (200)
T smart00176 141 NFEKPFLWLARKL 153 (200)
T ss_pred CHHHHHHHHHHHH
Confidence 9999999998754
No 92
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.95 E-value=5.7e-27 Score=163.34 Aligned_cols=159 Identities=16% Similarity=0.240 Sum_probs=112.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcc-eeEEEe--CCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeC
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPT-SEELSI--GKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDA 97 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~-~~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 97 (193)
+||+++|.+|||||||++++.++.+....++.... .....+ .+..+.+|||||++.+...+..++..+|++++|+|+
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~ 80 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYSV 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcccceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEEC
Confidence 48999999999999999999998876544432222 222222 457899999999988877777778999999999999
Q ss_pred CChhhHHHHHH-HHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeee
Q 029453 98 YDKERFSESKR-ELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIV 176 (193)
Q Consensus 98 ~~~~~~~~~~~-~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 176 (193)
+++.++..... |+..+ .... .+.|+++|+||+|+.+............... .. ......++++||+
T Consensus 81 ~~~~s~~~~~~~~~~~i-~~~~-~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~-~~----------~~~~~~~~e~Sa~ 147 (166)
T cd01893 81 DRPSTLERIRTKWLPLI-RRLG-VKVPIILVGNKSDLRDGSSQAGLEEEMLPIM-NE----------FREIETCVECSAK 147 (166)
T ss_pred CCHHHHHHHHHHHHHHH-HHhC-CCCCEEEEEEchhcccccchhHHHHHHHHHH-HH----------HhcccEEEEeccc
Confidence 99999988754 44444 3322 4799999999999975433211111110000 00 0011378999999
Q ss_pred cCCChhHHHHhhhhhc
Q 029453 177 RKMGYGEGFKWLSQYI 192 (193)
Q Consensus 177 ~~~gi~~~~~~i~~~l 192 (193)
+|.|++++|+.+...+
T Consensus 148 ~~~~v~~lf~~~~~~~ 163 (166)
T cd01893 148 TLINVSEVFYYAQKAV 163 (166)
T ss_pred cccCHHHHHHHHHHHh
Confidence 9999999999987754
No 93
>PLN03110 Rab GTPase; Provisional
Probab=99.95 E-value=1.3e-26 Score=167.84 Aligned_cols=158 Identities=19% Similarity=0.277 Sum_probs=122.4
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCcc-ccCCCCCcc--eeEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEE
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLV-QHQPTQYPT--SEELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVV 92 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 92 (193)
+..+||+++|++|||||||++++.+..+. ...+|.+.. ...+..++ ..+.+||++|++++...+..+++.+++++
T Consensus 10 ~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~i 89 (216)
T PLN03110 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL 89 (216)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEE
Confidence 35689999999999999999999988876 344555443 23444444 58999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC-HHHHHHhhCCCccccCCCcccCCCCCCccEEEE
Q 029453 93 YLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAAS-EDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVF 171 (193)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (193)
+|+|++++++++.+..|+..+... ...+.|+++|+||+|+.+... ..+....+... ..++++
T Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~-~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~----------------~~~~~~ 152 (216)
T PLN03110 90 LVYDITKRQTFDNVQRWLRELRDH-ADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEK----------------EGLSFL 152 (216)
T ss_pred EEEECCChHHHHHHHHHHHHHHHh-CCCCCeEEEEEEChhcccccCCCHHHHHHHHHH----------------cCCEEE
Confidence 999999999999998888877543 335799999999999863221 11222222111 225799
Q ss_pred EEeeecCCChhHHHHhhhhhc
Q 029453 172 MCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 172 ~~Sa~~~~gi~~~~~~i~~~l 192 (193)
++||++|.|++++|++|.+.+
T Consensus 153 e~SA~~g~~v~~lf~~l~~~i 173 (216)
T PLN03110 153 ETSALEATNVEKAFQTILLEI 173 (216)
T ss_pred EEeCCCCCCHHHHHHHHHHHH
Confidence 999999999999999997654
No 94
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=5.8e-27 Score=162.37 Aligned_cols=156 Identities=22% Similarity=0.334 Sum_probs=126.4
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHHhcCCccccCC-CCCc--ceeEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCE
Q 029453 16 LWQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQP-TQYP--TSEELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDA 90 (193)
Q Consensus 16 ~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~-t~~~--~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ 90 (193)
.+.+-+||+++|.+|||||+++.++..+.+..... |.+. ...++..++ ..+.+|||.||+++.....+|+..+.+
T Consensus 8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~g 87 (207)
T KOG0078|consen 8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMG 87 (207)
T ss_pred CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCe
Confidence 35577899999999999999999999888875443 4443 334455544 679999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC--CCCCHHH---HHHhhCCCccccCCCcccCCCCCC
Q 029453 91 VVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIP--YAASEDE---LRYHMGLTNFTTGKGNVNLDNTNV 165 (193)
Q Consensus 91 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~--~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 165 (193)
+++|||+++..+|..+..|+..+- .....+.|.++|+||+|+. +..+.++ +..+++.
T Consensus 88 i~LvyDitne~Sfeni~~W~~~I~-e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~----------------- 149 (207)
T KOG0078|consen 88 ILLVYDITNEKSFENIRNWIKNID-EHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGI----------------- 149 (207)
T ss_pred eEEEEEccchHHHHHHHHHHHHHH-hhCCCCCcEEEeeccccccccccccHHHHHHHHHHhCC-----------------
Confidence 999999999999999999887774 5555689999999999997 2333332 4444444
Q ss_pred ccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 166 RPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 166 ~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
.++++||++|.||++.|-.|...+
T Consensus 150 ---~F~EtSAk~~~NI~eaF~~La~~i 173 (207)
T KOG0078|consen 150 ---KFFETSAKTNFNIEEAFLSLARDI 173 (207)
T ss_pred ---eEEEccccCCCCHHHHHHHHHHHH
Confidence 559999999999999999887643
No 95
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.95 E-value=1.9e-26 Score=158.79 Aligned_cols=152 Identities=24% Similarity=0.344 Sum_probs=119.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcccc-CCCCCcceeEE--Ee--CCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEE
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLVQH-QPTQYPTSEEL--SI--GKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLI 95 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~~~-~~t~~~~~~~~--~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 95 (193)
+||+++|++|||||||++++.+..+... .+|.+...... .. ....+.+||+||+..+......+++++|++++|+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 5899999999999999999998887754 45555444333 33 3478899999999999888899999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC--CCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEE
Q 029453 96 DAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIP--YAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMC 173 (193)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (193)
|+++++++.....|+..+.... ..+.|+++++||+|+. .....++..+.... ...+++++
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~ 142 (159)
T cd00154 81 DITNRESFENLDKWLKELKEYA-PENIPIILVGNKIDLEDQRQVSTEEAQQFAKE-----------------NGLLFFET 142 (159)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEEcccccccccccHHHHHHHHHH-----------------cCCeEEEE
Confidence 9999988888888887776542 2579999999999995 33344443333222 12579999
Q ss_pred eeecCCChhHHHHhhhh
Q 029453 174 SIVRKMGYGEGFKWLSQ 190 (193)
Q Consensus 174 Sa~~~~gi~~~~~~i~~ 190 (193)
||+++.|+++++++|.+
T Consensus 143 sa~~~~~i~~~~~~i~~ 159 (159)
T cd00154 143 SAKTGENVEELFQSLAE 159 (159)
T ss_pred ecCCCCCHHHHHHHHhC
Confidence 99999999999999864
No 96
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.95 E-value=1.2e-26 Score=165.81 Aligned_cols=155 Identities=17% Similarity=0.161 Sum_probs=112.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc--eeEEEeCC--eEEEEEEcCChhhhH--------HhHHhhhcc
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPT--SEELSIGK--IKFKAFDLGGHQMAR--------RVWKDYYAK 87 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~--------~~~~~~~~~ 87 (193)
+||+++|.+|||||||++++.++.+.. +.||.+.. ...+.+++ ..+.+|||||...+. ......++.
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 589999999999999999999888764 45555432 23444555 678899999965321 112345788
Q ss_pred CCEEEEEEeCCChhhHHHHHHHHHHHHhCC--CCCCCcEEEEeeCCCCCCC--CCHHHHHHhhCCCccccCCCcccCCCC
Q 029453 88 VDAVVYLIDAYDKERFSESKRELDALLSDE--ALADVPFLILGNKIDIPYA--ASEDELRYHMGLTNFTTGKGNVNLDNT 163 (193)
Q Consensus 88 ~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~--~~~~~pviiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (193)
+|++++|+|++++++++....|+..+.... ...++|+++|+||+|+... ...++... +....
T Consensus 81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~-~~~~~------------- 146 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSV-LVRKS------------- 146 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHH-HHHHh-------------
Confidence 999999999999999999988888876543 2467999999999999632 22222211 10000
Q ss_pred CCccEEEEEEeeecCCChhHHHHhhhhh
Q 029453 164 NVRPLEVFMCSIVRKMGYGEGFKWLSQY 191 (193)
Q Consensus 164 ~~~~~~~~~~Sa~~~~gi~~~~~~i~~~ 191 (193)
..++++++||++|.|++++|+.+...
T Consensus 147 --~~~~~~e~Sak~g~~v~~lf~~i~~~ 172 (198)
T cd04142 147 --WKCGYLECSAKYNWHILLLFKELLIS 172 (198)
T ss_pred --cCCcEEEecCCCCCCHHHHHHHHHHH
Confidence 23578999999999999999998753
No 97
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.95 E-value=1.6e-26 Score=161.50 Aligned_cols=153 Identities=20% Similarity=0.233 Sum_probs=117.3
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCcc--ccCCCCCcce--eEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEE
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLV--QHQPTQYPTS--EELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAV 91 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~--~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~i 91 (193)
.+-+||+++|.+|||||||++++.++.+. .+.+|.+... ..+..++ ..+.+||++|++.+...+..++..+|++
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~ 81 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA 81 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence 35689999999999999999999998875 3455655432 3445544 5788999999998888888888999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCC-----CHHHHHHhhCCCccccCCCcccCCCCCCc
Q 029453 92 VYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAA-----SEDELRYHMGLTNFTTGKGNVNLDNTNVR 166 (193)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (193)
++|+|++++.++.....|+..+.. ..++|+++|+||+|+.+.. ..+++.+.++..
T Consensus 82 llv~d~~~~~s~~~~~~~~~~~~~---~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~----------------- 141 (169)
T cd01892 82 CLVYDSSDPKSFSYCAEVYKKYFM---LGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLP----------------- 141 (169)
T ss_pred EEEEeCCCHHHHHHHHHHHHHhcc---CCCCeEEEEEEcccccccccccccCHHHHHHHcCCC-----------------
Confidence 999999999888888777775522 2479999999999996322 122333332221
Q ss_pred cEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 167 PLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 167 ~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
.++++||++|.|++++|+.|.+.+
T Consensus 142 --~~~~~Sa~~~~~v~~lf~~l~~~~ 165 (169)
T cd01892 142 --PPLHFSSKLGDSSNELFTKLATAA 165 (169)
T ss_pred --CCEEEEeccCccHHHHHHHHHHHh
Confidence 348999999999999999987643
No 98
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.95 E-value=2.2e-27 Score=157.01 Aligned_cols=160 Identities=20% Similarity=0.269 Sum_probs=129.3
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHHhcCCccccCCC-CCc--ceeEEEeC--CeEEEEEEcCChhhhHHhHHhhhccCCE
Q 029453 16 LWQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPT-QYP--TSEELSIG--KIKFKAFDLGGHQMARRVWKDYYAKVDA 90 (193)
Q Consensus 16 ~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t-~~~--~~~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 90 (193)
.....+||.++|.+|+|||||+.++..+.+.+..++ .+. ....+..+ ...+.+|||+|+++|+.+.+.|++.+.+
T Consensus 7 ~~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqG 86 (209)
T KOG0080|consen 7 GYDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQG 86 (209)
T ss_pred CcceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCce
Confidence 345679999999999999999999999999877764 443 33444444 4678999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC--CCCCHHHHHHhhCCCccccCCCcccCCCCCCccE
Q 029453 91 VVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIP--YAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPL 168 (193)
Q Consensus 91 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (193)
+|+|+|++.+++|..+..|+.++-.....+++-.++|+||+|.. +..+.+|=.+.-.. ..+
T Consensus 87 iIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~-----------------h~~ 149 (209)
T KOG0080|consen 87 IILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARK-----------------HRC 149 (209)
T ss_pred eEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHh-----------------hCc
Confidence 99999999999999999999988665555678889999999986 44555542222211 235
Q ss_pred EEEEEeeecCCChhHHHHhhhhhc
Q 029453 169 EVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 169 ~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
.+++|||++.+|+...|+.++..+
T Consensus 150 LFiE~SAkt~~~V~~~FeelveKI 173 (209)
T KOG0080|consen 150 LFIECSAKTRENVQCCFEELVEKI 173 (209)
T ss_pred EEEEcchhhhccHHHHHHHHHHHH
Confidence 779999999999999999988754
No 99
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.95 E-value=1.5e-26 Score=165.53 Aligned_cols=155 Identities=21% Similarity=0.225 Sum_probs=119.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCcccc-CCCCC-cceeEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeC
Q 029453 22 KILFLGLDNSGKTTLLHMLKDERLVQH-QPTQY-PTSEELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDA 97 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~~~~~~-~~t~~-~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 97 (193)
||+++|.+|||||||++++.++.+... .+|.. .....+.+++ ..+.+||+||+..+..++..++..+|++++|+|+
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~ 80 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAV 80 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEEC
Confidence 689999999999999999998887643 33332 2223455555 6789999999999888888889999999999999
Q ss_pred CChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC-C--CHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEe
Q 029453 98 YDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYA-A--SEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCS 174 (193)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 174 (193)
+++.+++....|+..+.......+.|+++|+||+|+.+. . ..++..+..... ....++++|
T Consensus 81 ~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~----------------~~~~~~~~S 144 (198)
T cd04147 81 DDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELD----------------WNCGFVETS 144 (198)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhh----------------cCCcEEEec
Confidence 999999999888888877655568999999999998642 1 121222111100 124689999
Q ss_pred eecCCChhHHHHhhhhhc
Q 029453 175 IVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 175 a~~~~gi~~~~~~i~~~l 192 (193)
|++|.|++++|++|.+.+
T Consensus 145 a~~g~gv~~l~~~l~~~~ 162 (198)
T cd04147 145 AKDNENVLEVFKELLRQA 162 (198)
T ss_pred CCCCCCHHHHHHHHHHHh
Confidence 999999999999998764
No 100
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.95 E-value=2.2e-26 Score=164.08 Aligned_cols=153 Identities=18% Similarity=0.234 Sum_probs=116.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc--cCCCCCcce--eEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEEEE
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLVQ--HQPTQYPTS--EELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVVYL 94 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~~--~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 94 (193)
+||+++|++|+|||||++++.++.+.. +.+|.+... ..+..++ ..+.+||++|++++......++..+|++++|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 489999999999999999999988763 445555432 3345554 4677999999999888888888999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCC------CHHHHHHhhCCCccccCCCcccCCCCCCccE
Q 029453 95 IDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAA------SEDELRYHMGLTNFTTGKGNVNLDNTNVRPL 168 (193)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (193)
+|++++.++.....|+..+... ..+.|+++|+||+|+.... ..++...... . ...
T Consensus 81 ~d~~~~~s~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~-~----------------~~~ 141 (193)
T cd04118 81 YDLTDSSSFERAKFWVKELQNL--EEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFAD-E----------------IKA 141 (193)
T ss_pred EECCCHHHHHHHHHHHHHHHhc--CCCCCEEEEEEcccccccccccCccCHHHHHHHHH-H----------------cCC
Confidence 9999999998888888877543 2479999999999985321 1111111110 0 124
Q ss_pred EEEEEeeecCCChhHHHHhhhhhc
Q 029453 169 EVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 169 ~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
+++++||++|.|+++++++|.+.+
T Consensus 142 ~~~~~Sa~~~~gv~~l~~~i~~~~ 165 (193)
T cd04118 142 QHFETSSKTGQNVDELFQKVAEDF 165 (193)
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHH
Confidence 689999999999999999998643
No 101
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.95 E-value=3.4e-26 Score=159.72 Aligned_cols=158 Identities=20% Similarity=0.203 Sum_probs=118.6
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCc--ceeEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEE
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYP--TSEELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVV 92 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 92 (193)
...++|+++|++|||||||++++..+.+.. ..++.+. ....+.+.+ ..+.+||+||++.+...+..++..+|+++
T Consensus 5 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 84 (169)
T cd04114 5 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALI 84 (169)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence 456899999999999999999998766553 3344332 223445554 56889999999999888888999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC-HHHHHHhhCCCccccCCCcccCCCCCCccEEEE
Q 029453 93 YLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAAS-EDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVF 171 (193)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (193)
+|+|++++.++.....|+..+... ...+.|+++++||+|+.+... ..+....+... ....++
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~----------------~~~~~~ 147 (169)
T cd04114 85 LTYDITCEESFRCLPEWLREIEQY-ANNKVITILVGNKIDLAERREVSQQRAEEFSDA----------------QDMYYL 147 (169)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECcccccccccCHHHHHHHHHH----------------cCCeEE
Confidence 999999998888888877766432 334789999999999863222 12222222211 124789
Q ss_pred EEeeecCCChhHHHHhhhhhc
Q 029453 172 MCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 172 ~~Sa~~~~gi~~~~~~i~~~l 192 (193)
++||++|.|++++|++|.+.+
T Consensus 148 ~~Sa~~~~gv~~l~~~i~~~~ 168 (169)
T cd04114 148 ETSAKESDNVEKLFLDLACRL 168 (169)
T ss_pred EeeCCCCCCHHHHHHHHHHHh
Confidence 999999999999999998754
No 102
>PLN03108 Rab family protein; Provisional
Probab=99.95 E-value=6.8e-26 Score=163.49 Aligned_cols=157 Identities=23% Similarity=0.296 Sum_probs=120.5
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc--eeEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEE
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPT--SEELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVV 92 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 92 (193)
...+||+++|++|||||||++++.+..+.. ..+|.+.. ...+.+++ ..+.+|||+|++.+...+..++..+|+++
T Consensus 4 ~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~v 83 (210)
T PLN03108 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (210)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence 356899999999999999999999887653 34444433 23344444 56889999999999888888999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhCCCccccCCCcccCCCCCCccEEE
Q 029453 93 YLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY--AASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEV 170 (193)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (193)
+|+|+++++++..+..|+..+... ...+.|+++++||+|+.. ....++....... ..+++
T Consensus 84 lv~D~~~~~s~~~l~~~~~~~~~~-~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~ 145 (210)
T PLN03108 84 LVYDITRRETFNHLASWLEDARQH-ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKE-----------------HGLIF 145 (210)
T ss_pred EEEECCcHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECccCccccCCCHHHHHHHHHH-----------------cCCEE
Confidence 999999999999888888776543 235799999999999963 3333333322211 12478
Q ss_pred EEEeeecCCChhHHHHhhhhhc
Q 029453 171 FMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 171 ~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
+++||+++.|++++|+++.+.+
T Consensus 146 ~e~Sa~~~~~v~e~f~~l~~~~ 167 (210)
T PLN03108 146 MEASAKTAQNVEEAFIKTAAKI 167 (210)
T ss_pred EEEeCCCCCCHHHHHHHHHHHH
Confidence 9999999999999999987653
No 103
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.95 E-value=3.6e-26 Score=157.95 Aligned_cols=154 Identities=21% Similarity=0.295 Sum_probs=118.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCcccc-CCCCC-cceeEEEeC--CeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeC
Q 029453 22 KILFLGLDNSGKTTLLHMLKDERLVQH-QPTQY-PTSEELSIG--KIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDA 97 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~~~~~~-~~t~~-~~~~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 97 (193)
||+++|++|||||||++++.+..+... .++.. ........+ ...+.+||+||+..+......+++.+|++++|+|+
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 80 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSI 80 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEEC
Confidence 689999999999999999998775532 33332 223334444 36789999999999888888899999999999999
Q ss_pred CChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC--CCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEee
Q 029453 98 YDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYA--ASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSI 175 (193)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 175 (193)
++++++.....++..+.......+.|+++++||+|+... ...++....... . ..+++++|+
T Consensus 81 ~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-~----------------~~~~~~~S~ 143 (160)
T cd00876 81 TDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKE-W----------------GCPFIETSA 143 (160)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHH-c----------------CCcEEEecc
Confidence 999999999998888877654468999999999998742 222222222211 1 147899999
Q ss_pred ecCCChhHHHHhhhhhc
Q 029453 176 VRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 176 ~~~~gi~~~~~~i~~~l 192 (193)
+++.|+++++++|.+++
T Consensus 144 ~~~~~i~~l~~~l~~~i 160 (160)
T cd00876 144 KDNINIDEVFKLLVREI 160 (160)
T ss_pred CCCCCHHHHHHHHHhhC
Confidence 99999999999998764
No 104
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.95 E-value=1e-26 Score=163.13 Aligned_cols=168 Identities=19% Similarity=0.268 Sum_probs=115.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc-eeEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEEEEEe
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPT-SEELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVVYLID 96 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~-~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 96 (193)
+||+++|++|+|||||++++.++.+.. +.++.... ...+..++ ..+.+|||||++.+...+..++..+|++++|+|
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~ 80 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFS 80 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEEE
Confidence 589999999999999999999888764 33443322 22344444 457899999999988888888899999999999
Q ss_pred CCChhhHHHHHH-HHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEee
Q 029453 97 AYDKERFSESKR-ELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSI 175 (193)
Q Consensus 97 ~~~~~~~~~~~~-~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 175 (193)
.+++++++.... |+..+ ... ..+.|+++++||+|+.+.....+....+......... ....+ ......++++|||
T Consensus 81 ~~~~~s~~~~~~~~~~~l-~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~-~~~~~-~~~~~~~~~e~Sa 156 (174)
T cd04135 81 VVNPASFQNVKEEWVPEL-KEY-APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQ-GQKLA-KEIGAHCYVECSA 156 (174)
T ss_pred CCCHHHHHHHHHHHHHHH-Hhh-CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHH-HHHHH-HHcCCCEEEEecC
Confidence 999999988764 44444 333 4689999999999986432222111111111110000 00000 0012247899999
Q ss_pred ecCCChhHHHHhhhhhc
Q 029453 176 VRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 176 ~~~~gi~~~~~~i~~~l 192 (193)
++|.|++++|+.++..+
T Consensus 157 ~~~~gi~~~f~~~~~~~ 173 (174)
T cd04135 157 LTQKGLKTVFDEAILAI 173 (174)
T ss_pred CcCCCHHHHHHHHHHHh
Confidence 99999999999998754
No 105
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.95 E-value=5.6e-26 Score=160.27 Aligned_cols=155 Identities=20% Similarity=0.238 Sum_probs=120.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCc-ceeEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEEEEEe
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYP-TSEELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVVYLID 96 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~-~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 96 (193)
.||+++|++|||||||++++.+..+.. ..+|... ....+...+ ..+.+||+||++++...+..++..++++++|+|
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 81 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYS 81 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEE
Confidence 589999999999999999999887653 4444432 234455554 567899999999998888888999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC--CCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEe
Q 029453 97 AYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYA--ASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCS 174 (193)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 174 (193)
.++..+++....++..+++.....+.|+++++||+|+... ...++...... . ..++++++|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~-~----------------~~~~~~~~S 144 (180)
T cd04137 82 VTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAE-S----------------WGAAFLESS 144 (180)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHH-H----------------cCCeEEEEe
Confidence 9999999999999999887665568899999999998632 22222221111 1 114789999
Q ss_pred eecCCChhHHHHhhhhhc
Q 029453 175 IVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 175 a~~~~gi~~~~~~i~~~l 192 (193)
|+++.|+.+++++|.+.+
T Consensus 145 a~~~~gv~~l~~~l~~~~ 162 (180)
T cd04137 145 ARENENVEEAFELLIEEI 162 (180)
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 999999999999998754
No 106
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.95 E-value=3.2e-26 Score=166.28 Aligned_cols=153 Identities=18% Similarity=0.192 Sum_probs=112.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcc--ccCCCCC--cceeEEEe--CCeEEEEEEcCChhhhHHhHHhhhc-cCCEEEE
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLV--QHQPTQY--PTSEELSI--GKIKFKAFDLGGHQMARRVWKDYYA-KVDAVVY 93 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~--~~~~t~~--~~~~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~-~~d~ii~ 93 (193)
+||+++|++|||||||++++..+.+. .+.++.+ .....+.+ ....+.+||+||++.+ ....++. .+|++++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~--~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEMW--TEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcchH--HHhHHhhcCCCEEEE
Confidence 58999999999999999999887774 3334442 22333444 3467899999999832 2334556 8999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCC--CHHHHHHhhCCCccccCCCcccCCCCCCccEEEE
Q 029453 94 LIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAA--SEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVF 171 (193)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (193)
|+|+++++++.....|+..+.......+.|+++|+||+|+.+.. ..++.. .+... ..++++
T Consensus 79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~-~~a~~----------------~~~~~~ 141 (221)
T cd04148 79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGR-ACAVV----------------FDCKFI 141 (221)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHH-HHHHH----------------cCCeEE
Confidence 99999999999888888877654434679999999999996432 222211 11100 124689
Q ss_pred EEeeecCCChhHHHHhhhhhc
Q 029453 172 MCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 172 ~~Sa~~~~gi~~~~~~i~~~l 192 (193)
++||++|.|++++|++|.+.+
T Consensus 142 e~SA~~~~gv~~l~~~l~~~~ 162 (221)
T cd04148 142 ETSAGLQHNVDELLEGIVRQI 162 (221)
T ss_pred EecCCCCCCHHHHHHHHHHHH
Confidence 999999999999999998765
No 107
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.95 E-value=1.3e-26 Score=161.40 Aligned_cols=154 Identities=20% Similarity=0.254 Sum_probs=111.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCC-cceeEEEeCC--eEEEEEEcCChhh-hHHhHHhhhccCCEEEEEEe
Q 029453 22 KILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQY-PTSEELSIGK--IKFKAFDLGGHQM-ARRVWKDYYAKVDAVVYLID 96 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~-~~~~~~~~~~--~~~~~~D~~g~~~-~~~~~~~~~~~~d~ii~v~d 96 (193)
||+++|++|||||||++++..+.+.. +.++.. ........++ ..+.+||+||++. .......+++.+|++++|+|
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d 80 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVYS 80 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEEE
Confidence 58999999999999999998877653 333332 1223334443 4688999999985 33455677889999999999
Q ss_pred CCChhhHHHHHHHHHHHHhCCC-CCCCcEEEEeeCCCCCCC--CCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEE
Q 029453 97 AYDKERFSESKRELDALLSDEA-LADVPFLILGNKIDIPYA--ASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMC 173 (193)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~-~~~~pviiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (193)
++++++++.+..|+..+..... ..+.|+++|+||+|+.+. .+.++..... .. ...+++++
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~-~~----------------~~~~~~e~ 143 (165)
T cd04146 81 ITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLA-SE----------------LGCLFFEV 143 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHH-HH----------------cCCEEEEe
Confidence 9999999988888777654332 357999999999998632 2322221111 11 11478999
Q ss_pred eeecCC-ChhHHHHhhhhhc
Q 029453 174 SIVRKM-GYGEGFKWLSQYI 192 (193)
Q Consensus 174 Sa~~~~-gi~~~~~~i~~~l 192 (193)
||++|. |++++|+.|.+.+
T Consensus 144 Sa~~~~~~v~~~f~~l~~~~ 163 (165)
T cd04146 144 SAAEDYDGVHSVFHELCREV 163 (165)
T ss_pred CCCCCchhHHHHHHHHHHHH
Confidence 999995 9999999998764
No 108
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.95 E-value=2.5e-26 Score=159.33 Aligned_cols=153 Identities=25% Similarity=0.369 Sum_probs=121.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce--eEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEEEEEe
Q 029453 22 KILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPTS--EELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVVYLID 96 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 96 (193)
||+++|++|||||||++++.++.+.. ..+|.+... ..+..++ ..+.+||++|++++.......+.++|++++|+|
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 79999999999999999999988764 444554433 3444444 579999999999999888889999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEe
Q 029453 97 AYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY--AASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCS 174 (193)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 174 (193)
.++++++..+..|+..+..... .+.|+++++||.|+.. ..+.++...... .. + .+++++|
T Consensus 81 ~~~~~S~~~~~~~~~~i~~~~~-~~~~iivvg~K~D~~~~~~v~~~~~~~~~~-~~---------------~-~~~~e~S 142 (162)
T PF00071_consen 81 VTDEESFENLKKWLEEIQKYKP-EDIPIIVVGNKSDLSDEREVSVEEAQEFAK-EL---------------G-VPYFEVS 142 (162)
T ss_dssp TTBHHHHHTHHHHHHHHHHHST-TTSEEEEEEETTTGGGGSSSCHHHHHHHHH-HT---------------T-SEEEEEB
T ss_pred cccccccccccccccccccccc-ccccceeeeccccccccccchhhHHHHHHH-Hh---------------C-CEEEEEE
Confidence 9999999999999998865543 4689999999999874 444443222221 11 1 5789999
Q ss_pred eecCCChhHHHHhhhhhc
Q 029453 175 IVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 175 a~~~~gi~~~~~~i~~~l 192 (193)
|+++.|+.++|..+.+.+
T Consensus 143 a~~~~~v~~~f~~~i~~i 160 (162)
T PF00071_consen 143 AKNGENVKEIFQELIRKI 160 (162)
T ss_dssp TTTTTTHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 999999999999998765
No 109
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.95 E-value=1e-26 Score=162.63 Aligned_cols=158 Identities=19% Similarity=0.289 Sum_probs=110.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcc-ccCCCCCcc-eeEEEe--CCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEe
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLV-QHQPTQYPT-SEELSI--GKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLID 96 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~-~~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 96 (193)
+||+++|++|||||||++++.++.+. ...++.... ...... ....+.+||+||++++.......++.+|++++|+|
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 80 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFS 80 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEEE
Confidence 58999999999999999999998874 233333221 122222 34679999999999887777777889999999999
Q ss_pred CCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHH--------HhhCCCccccCCCcccCCCCCCccE
Q 029453 97 AYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELR--------YHMGLTNFTTGKGNVNLDNTNVRPL 168 (193)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (193)
++++.++......+...+.... .+.|+++|+||+|+.+........ ....... ....+..
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~-----------~~~~~~~ 148 (171)
T cd00157 81 VDSPSSFENVKTKWIPEIRHYC-PNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKL-----------AKEIGAI 148 (171)
T ss_pred CCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHH-----------HHHhCCe
Confidence 9998888876654444333322 479999999999997443321110 0000000 0001234
Q ss_pred EEEEEeeecCCChhHHHHhhhh
Q 029453 169 EVFMCSIVRKMGYGEGFKWLSQ 190 (193)
Q Consensus 169 ~~~~~Sa~~~~gi~~~~~~i~~ 190 (193)
+++++||++|.|+++++++|.+
T Consensus 149 ~~~~~Sa~~~~gi~~l~~~i~~ 170 (171)
T cd00157 149 GYMECSALTQEGVKEVFEEAIR 170 (171)
T ss_pred EEEEeecCCCCCHHHHHHHHhh
Confidence 8999999999999999999875
No 110
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.95 E-value=9.9e-27 Score=163.21 Aligned_cols=164 Identities=18% Similarity=0.271 Sum_probs=112.7
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce-eEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCC
Q 029453 23 ILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPTS-EELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAY 98 (193)
Q Consensus 23 i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~ 98 (193)
|+++|++|||||||++++.++.+.. +.++..... ..+..++ ..+.+|||||++.+......+++.+|++++|+|++
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~ 80 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVD 80 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECC
Confidence 5899999999999999999988764 334433222 2333443 46899999999998888888899999999999999
Q ss_pred ChhhHHHHH-HHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC-HHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeee
Q 029453 99 DKERFSESK-RELDALLSDEALADVPFLILGNKIDIPYAAS-EDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIV 176 (193)
Q Consensus 99 ~~~~~~~~~-~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 176 (193)
++++++... .|+..+... .++.|+++|+||+|+..... .+++... ......... ....+. ......+++|||+
T Consensus 81 ~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~-~~~~v~~~~-~~~~~~-~~~~~~~~e~Sa~ 155 (174)
T smart00174 81 SPASFENVKEKWYPEVKHF--CPNTPIILVGTKLDLREDKSTLRELSKQ-KQEPVTYEQ-GEALAK-RIGAVKYLECSAL 155 (174)
T ss_pred CHHHHHHHHHHHHHHHHhh--CCCCCEEEEecChhhhhChhhhhhhhcc-cCCCccHHH-HHHHHH-HcCCcEEEEecCC
Confidence 999999876 466666432 25899999999999964221 1111111 000000000 000000 0122478999999
Q ss_pred cCCChhHHHHhhhhh
Q 029453 177 RKMGYGEGFKWLSQY 191 (193)
Q Consensus 177 ~~~gi~~~~~~i~~~ 191 (193)
+|.|++++|+.+.+.
T Consensus 156 ~~~~v~~lf~~l~~~ 170 (174)
T smart00174 156 TQEGVREVFEEAIRA 170 (174)
T ss_pred CCCCHHHHHHHHHHH
Confidence 999999999998765
No 111
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=2.7e-27 Score=158.46 Aligned_cols=176 Identities=32% Similarity=0.523 Sum_probs=148.2
Q ss_pred HHHHHHHHHhCCCCcccEEEEEcCCCCCHHHHHHHHhcCCc--------cccCCCCCcceeEEEeCCeEEEEEEcCChhh
Q 029453 5 DWFYGILVSLGLWQKEAKILFLGLDNSGKTTLLHMLKDERL--------VQHQPTQYPTSEELSIGKIKFKAFDLGGHQM 76 (193)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~i~i~G~~~~GKssl~~~l~~~~~--------~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~ 76 (193)
+.++.+++.+ ..+..+.+.|+|+-+||||||+.+...... ....+|.+.+..++..++..+.+||.+|++.
T Consensus 3 tl~~gl~~~~-~~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~~~~l~fwdlgGQe~ 81 (197)
T KOG0076|consen 3 TLMSGLYKYM-FKKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVCNAPLSFWDLGGQES 81 (197)
T ss_pred hHHHHHHHHH-hhhhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeeccceeEEEEcCChHH
Confidence 4566666555 677889999999999999999988643322 1234588889999999999999999999999
Q ss_pred hHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCC
Q 029453 77 ARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKG 156 (193)
Q Consensus 77 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 156 (193)
.+++|..|+..++++|+++|+++++.++.....++.+.......+.|+++.+||-|+.+.....++...++...
T Consensus 82 lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~~~e------ 155 (197)
T KOG0076|consen 82 LRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFGLAE------ 155 (197)
T ss_pred HHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHhhhhh------
Confidence 99999999999999999999999999999999999998887778999999999999988777777777776411
Q ss_pred cccCCCCCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 157 NVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 157 ~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
....+.+++.++||.+|+|+++..+|++..+
T Consensus 156 -----~~~~rd~~~~pvSal~gegv~egi~w~v~~~ 186 (197)
T KOG0076|consen 156 -----LIPRRDNPFQPVSALTGEGVKEGIEWLVKKL 186 (197)
T ss_pred -----hcCCccCccccchhhhcccHHHHHHHHHHHH
Confidence 1122668999999999999999999998765
No 112
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.94 E-value=5.6e-26 Score=159.34 Aligned_cols=165 Identities=15% Similarity=0.251 Sum_probs=111.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcccc-CCCCCcc-eeEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEEEEEe
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLVQH-QPTQYPT-SEELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVVYLID 96 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~~~-~~t~~~~-~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 96 (193)
+|++++|++|||||||++++.++.+... .+|.... ...+..++ ..+.+||+||++++...+..+++++|++++|+|
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d 80 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFS 80 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEEE
Confidence 5899999999999999999988877643 3343211 12334443 678899999999998888888899999999999
Q ss_pred CCChhhHHHHH-HHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCH-HHHHHhhCCCccccCCCcccCCCCCCccEEEEEEe
Q 029453 97 AYDKERFSESK-RELDALLSDEALADVPFLILGNKIDIPYAASE-DELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCS 174 (193)
Q Consensus 97 ~~~~~~~~~~~-~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 174 (193)
++++++++... .|+..+... ..+.|+++++||+|+.+.... ..+... ......... ....+. ....+.++++|
T Consensus 81 ~~~~~sf~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~-~~~~v~~~~-~~~~a~-~~~~~~~~e~S 155 (173)
T cd04130 81 VVNPSSFQNISEKWIPEIRKH--NPKAPIILVGTQADLRTDVNVLIQLARY-GEKPVSQSR-AKALAE-KIGACEYIECS 155 (173)
T ss_pred CCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeeChhhccChhHHHHHhhc-CCCCcCHHH-HHHHHH-HhCCCeEEEEe
Confidence 99999998875 466555432 247999999999998642211 000000 000000000 000000 01234899999
Q ss_pred eecCCChhHHHHhhhh
Q 029453 175 IVRKMGYGEGFKWLSQ 190 (193)
Q Consensus 175 a~~~~gi~~~~~~i~~ 190 (193)
|++|.|++++|+.+.-
T Consensus 156 a~~~~~v~~lf~~~~~ 171 (173)
T cd04130 156 ALTQKNLKEVFDTAIL 171 (173)
T ss_pred CCCCCCHHHHHHHHHh
Confidence 9999999999998753
No 113
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.94 E-value=1.5e-26 Score=156.31 Aligned_cols=156 Identities=21% Similarity=0.333 Sum_probs=125.3
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc--eeEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEE
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPT--SEELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAV 91 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~i 91 (193)
...-+||.++|.+|+|||||++++.+.++.. +..|.+.. ...+.+++ ..+.+|||+|+++|.++...+++.+|+.
T Consensus 6 K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcC 85 (210)
T KOG0394|consen 6 KRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCC 85 (210)
T ss_pred cccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceE
Confidence 3456899999999999999999999999874 44555532 33344443 6789999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhCCCC---CCCcEEEEeeCCCCCCCC----CHH---HHHHhhCCCccccCCCcccCC
Q 029453 92 VYLIDAYDKERFSESKRELDALLSDEAL---ADVPFLILGNKIDIPYAA----SED---ELRYHMGLTNFTTGKGNVNLD 161 (193)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~---~~~pviiv~nK~Dl~~~~----~~~---~~~~~~~~~~~~~~~~~~~~~ 161 (193)
++++|++++.+|+.+..|..+++.+... ...|.++++||+|+.... +.. +++...
T Consensus 86 vlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~--------------- 150 (210)
T KOG0394|consen 86 VLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSK--------------- 150 (210)
T ss_pred EEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhc---------------
Confidence 9999999999999999999999887543 358999999999996322 211 233322
Q ss_pred CCCCccEEEEEEeeecCCChhHHHHhhhhh
Q 029453 162 NTNVRPLEVFMCSIVRKMGYGEGFKWLSQY 191 (193)
Q Consensus 162 ~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~ 191 (193)
+..+++++|||...|+.+.|+.+...
T Consensus 151 ----gnipyfEtSAK~~~NV~~AFe~ia~~ 176 (210)
T KOG0394|consen 151 ----GNIPYFETSAKEATNVDEAFEEIARR 176 (210)
T ss_pred ----CCceeEEecccccccHHHHHHHHHHH
Confidence 45689999999999999999988653
No 114
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=3.1e-26 Score=149.42 Aligned_cols=155 Identities=20% Similarity=0.327 Sum_probs=125.0
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCcc-ccCCCCCcceeE---EEeC-CeEEEEEEcCChhhhHHhHHhhhccCCEE
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLV-QHQPTQYPTSEE---LSIG-KIKFKAFDLGGHQMARRVWKDYYAKVDAV 91 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~~~---~~~~-~~~~~~~D~~g~~~~~~~~~~~~~~~d~i 91 (193)
....+|+.++|+..+|||||+.++.++.+. ....|.+..... ++.. -..+.+|||.|++.++.....+++.++++
T Consensus 18 FDymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgf 97 (193)
T KOG0093|consen 18 FDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGF 97 (193)
T ss_pred ccceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceE
Confidence 346779999999999999999999999887 344566554321 1122 26899999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHH---HHHHhhCCCccccCCCcccCCCCCCc
Q 029453 92 VYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY--AASED---ELRYHMGLTNFTTGKGNVNLDNTNVR 166 (193)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~--~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (193)
|+|+|++|.++|.....|...+- .....+.|+++|+||||+.. ..+.+ ++.++++..+
T Consensus 98 iLmyDitNeeSf~svqdw~tqIk-tysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfef---------------- 160 (193)
T KOG0093|consen 98 ILMYDITNEESFNSVQDWITQIK-TYSWDNAQVILVGNKCDMDSERVISHERGRQLADQLGFEF---------------- 160 (193)
T ss_pred EEEEecCCHHHHHHHHHHHHHhe-eeeccCceEEEEecccCCccceeeeHHHHHHHHHHhChHH----------------
Confidence 99999999999999999988874 44667999999999999973 22222 3666666555
Q ss_pred cEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 167 PLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 167 ~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
+++|||.+.|++++|+.+...+
T Consensus 161 ----FEtSaK~NinVk~~Fe~lv~~I 182 (193)
T KOG0093|consen 161 ----FETSAKENINVKQVFERLVDII 182 (193)
T ss_pred ----hhhcccccccHHHHHHHHHHHH
Confidence 8899999999999999987654
No 115
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.94 E-value=9.5e-26 Score=158.35 Aligned_cols=165 Identities=19% Similarity=0.322 Sum_probs=114.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce-eEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEEEEE
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPTS-EELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVVYLI 95 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 95 (193)
+.||+++|++|||||||++++.++.+.. +.+|..... ..+.+++ ..+.+|||||++.+......++.++|++++|+
T Consensus 1 ~~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (175)
T cd01870 1 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF 80 (175)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence 3689999999999999999999988764 445544332 3444443 57899999999988887777889999999999
Q ss_pred eCCChhhHHHHHH-HHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHH-HHHHhhCCCc--cccCCCcccCCCCCCccEEEE
Q 029453 96 DAYDKERFSESKR-ELDALLSDEALADVPFLILGNKIDIPYAASED-ELRYHMGLTN--FTTGKGNVNLDNTNVRPLEVF 171 (193)
Q Consensus 96 d~~~~~~~~~~~~-~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 171 (193)
|+++++++..... |+..+.. . ..+.|+++|+||+|+.+..... ++.. ..... +..+.. .+. ......++
T Consensus 81 ~~~~~~s~~~~~~~~~~~~~~-~-~~~~piilv~nK~Dl~~~~~~~~~i~~-~~~~~v~~~~~~~---~~~-~~~~~~~~ 153 (175)
T cd01870 81 SIDSPDSLENIPEKWTPEVKH-F-CPNVPIILVGNKKDLRNDEHTRRELAK-MKQEPVKPEEGRD---MAN-KIGAFGYM 153 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHh-h-CCCCCEEEEeeChhcccChhhhhhhhh-ccCCCccHHHHHH---HHH-HcCCcEEE
Confidence 9999988888754 5555532 2 2478999999999986432211 1111 00000 000000 000 01234799
Q ss_pred EEeeecCCChhHHHHhhhhh
Q 029453 172 MCSIVRKMGYGEGFKWLSQY 191 (193)
Q Consensus 172 ~~Sa~~~~gi~~~~~~i~~~ 191 (193)
+|||++|.|++++|++|.+.
T Consensus 154 ~~Sa~~~~~v~~lf~~l~~~ 173 (175)
T cd01870 154 ECSAKTKEGVREVFEMATRA 173 (175)
T ss_pred EeccccCcCHHHHHHHHHHH
Confidence 99999999999999999865
No 116
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.94 E-value=1.9e-25 Score=156.05 Aligned_cols=156 Identities=20% Similarity=0.199 Sum_probs=110.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCcc-c--cCCCCCcceeEEEeCCe-EEEEEEcCChhh----h---HHhHHhhhccCCE
Q 029453 22 KILFLGLDNSGKTTLLHMLKDERLV-Q--HQPTQYPTSEELSIGKI-KFKAFDLGGHQM----A---RRVWKDYYAKVDA 90 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~~~~-~--~~~t~~~~~~~~~~~~~-~~~~~D~~g~~~----~---~~~~~~~~~~~d~ 90 (193)
+|+++|.+|||||||++++.+.... . ...|..+....+.+++. .+.+|||||+.. . ...+...+..+|+
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 81 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKGLGHRFLRHIERTRL 81 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCCCeEEEEecCcccCcccccCCchHHHHHHHHhCCE
Confidence 6899999999999999999876542 1 12355566666677665 899999999631 1 1122223456999
Q ss_pred EEEEEeCCCh-hhHHHHHHHHHHHHhCC-CCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccE
Q 029453 91 VVYLIDAYDK-ERFSESKRELDALLSDE-ALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPL 168 (193)
Q Consensus 91 ii~v~d~~~~-~~~~~~~~~~~~~~~~~-~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (193)
+++|+|++++ ++++....+...+.... ...++|+++|+||+|+.+.....+....+.... ...
T Consensus 82 vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~---------------~~~ 146 (170)
T cd01898 82 LLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKELLKEL---------------WGK 146 (170)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHHHHHHHhhC---------------CCC
Confidence 9999999998 67877777777665432 124789999999999975433333222221110 124
Q ss_pred EEEEEeeecCCChhHHHHhhhhhc
Q 029453 169 EVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 169 ~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
+++++||+++.|+++++++|.+.+
T Consensus 147 ~~~~~Sa~~~~gi~~l~~~i~~~~ 170 (170)
T cd01898 147 PVFPISALTGEGLDELLRKLAELL 170 (170)
T ss_pred CEEEEecCCCCCHHHHHHHHHhhC
Confidence 689999999999999999998754
No 117
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=2e-26 Score=149.74 Aligned_cols=175 Identities=33% Similarity=0.556 Sum_probs=156.0
Q ss_pred HHHHHHHhCCCCcccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCeEEEEEEcCChhhhHHhHHhhhc
Q 029453 7 FYGILVSLGLWQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMARRVWKDYYA 86 (193)
Q Consensus 7 ~~~~~~~~~~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~ 86 (193)
+..+++.+...+++.++.++|--|+|||+++-++--++...+.||.+.+.+.+.+.+.++.+||.+|+...+..|+.|+.
T Consensus 5 ~~s~f~~L~g~e~e~rililgldGaGkttIlyrlqvgevvttkPtigfnve~v~yKNLk~~vwdLggqtSirPyWRcYy~ 84 (182)
T KOG0072|consen 5 FSSLFKALQGPEREMRILILGLDGAGKTTILYRLQVGEVVTTKPTIGFNVETVPYKNLKFQVWDLGGQTSIRPYWRCYYA 84 (182)
T ss_pred HHHHHHHhcCCccceEEEEeeccCCCeeEEEEEcccCcccccCCCCCcCccccccccccceeeEccCcccccHHHHHHhc
Confidence 44555666677799999999999999999999988888888999999999999999999999999999999999999999
Q ss_pred cCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCc
Q 029453 87 KVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVR 166 (193)
Q Consensus 87 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (193)
+.|++|||+|.+|.+++.-....+..++......+..+++++||.|..-.....|....++...+.. +
T Consensus 85 dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~------------r 152 (182)
T KOG0072|consen 85 DTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKD------------R 152 (182)
T ss_pred ccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhh------------h
Confidence 9999999999999999988888888888887777888999999999987778888888888777422 5
Q ss_pred cEEEEEEeeecCCChhHHHHhhhhhcC
Q 029453 167 PLEVFMCSIVRKMGYGEGFKWLSQYIK 193 (193)
Q Consensus 167 ~~~~~~~Sa~~~~gi~~~~~~i~~~l~ 193 (193)
.+.++..||.+|+|++..++|+++.++
T Consensus 153 ~~~Iv~tSA~kg~Gld~~~DWL~~~l~ 179 (182)
T KOG0072|consen 153 IWQIVKTSAVKGEGLDPAMDWLQRPLK 179 (182)
T ss_pred eeEEEeeccccccCCcHHHHHHHHHHh
Confidence 589999999999999999999988653
No 118
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.94 E-value=3.1e-25 Score=154.69 Aligned_cols=153 Identities=16% Similarity=0.196 Sum_probs=104.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcccc-C--CCCCcceeEEEeCCeEEEEEEcCChhhh---------HHhHHhhhccC
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLVQH-Q--PTQYPTSEELSIGKIKFKAFDLGGHQMA---------RRVWKDYYAKV 88 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~~~-~--~t~~~~~~~~~~~~~~~~~~D~~g~~~~---------~~~~~~~~~~~ 88 (193)
.+|+++|++|||||||++++.+..+... . .|..........++..+.+|||||+... ..........+
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~ 80 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHLR 80 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhcc
Confidence 4799999999999999999998876421 1 2444455555666789999999997321 01111112346
Q ss_pred CEEEEEEeCCChhhH--HHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCc
Q 029453 89 DAVVYLIDAYDKERF--SESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVR 166 (193)
Q Consensus 89 d~ii~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (193)
|++++|+|+++..++ .....++..+... ..+.|+++|+||+|+.......+...... ..
T Consensus 81 d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~~~~~~~-----------------~~ 141 (168)
T cd01897 81 AAVLFLFDPSETCGYSLEEQLSLFEEIKPL--FKNKPVIVVLNKIDLLTFEDLSEIEEEEE-----------------LE 141 (168)
T ss_pred CcEEEEEeCCcccccchHHHHHHHHHHHhh--cCcCCeEEEEEccccCchhhHHHHHHhhh-----------------hc
Confidence 899999999986543 4444555555322 14799999999999964333222111110 02
Q ss_pred cEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 167 PLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 167 ~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
.++++++||++|.|+++++++|.+.|
T Consensus 142 ~~~~~~~Sa~~~~gi~~l~~~l~~~~ 167 (168)
T cd01897 142 GEEVLKISTLTEEGVDEVKNKACELL 167 (168)
T ss_pred cCceEEEEecccCCHHHHHHHHHHHh
Confidence 35789999999999999999998765
No 119
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.94 E-value=1.8e-25 Score=159.14 Aligned_cols=151 Identities=19% Similarity=0.254 Sum_probs=105.3
Q ss_pred ccEEEEEcCCCCCHHHHHH-HHhcCCcc------ccCCCCCc-cee------------EEEeCCeEEEEEEcCChhhhHH
Q 029453 20 EAKILFLGLDNSGKTTLLH-MLKDERLV------QHQPTQYP-TSE------------ELSIGKIKFKAFDLGGHQMARR 79 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~-~l~~~~~~------~~~~t~~~-~~~------------~~~~~~~~~~~~D~~g~~~~~~ 79 (193)
.+||+++|.+|||||||+. ++.++.+. .+.||.+. ... .+......+.+|||+|++..
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~-- 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK-- 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh--
Confidence 4799999999999999996 56554332 23455531 111 12223478999999999753
Q ss_pred hHHhhhccCCEEEEEEeCCChhhHHHHH-HHHHHHHhCCCCCCCcEEEEeeCCCCCCCC---------------------
Q 029453 80 VWKDYYAKVDAVVYLIDAYDKERFSESK-RELDALLSDEALADVPFLILGNKIDIPYAA--------------------- 137 (193)
Q Consensus 80 ~~~~~~~~~d~ii~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~--------------------- 137 (193)
....+++++|++++|+|+++++++.... .|+..+... . .+.|+++|+||+|+....
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~-~-~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V 157 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHF-C-PRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADIL 157 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHh-C-CCCCEEEEEEchhccccccchhhhcccccccccccCCcc
Confidence 3445788999999999999999999886 466666432 2 478999999999985321
Q ss_pred CHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeeecCCChhHHHHhhhhh
Q 029453 138 SEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQY 191 (193)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~ 191 (193)
+.++... + +. ...+.+++|||++|.|++++|+.+.++
T Consensus 158 ~~~e~~~-~--------------a~--~~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 158 PPETGRA-V--------------AK--ELGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred CHHHHHH-H--------------HH--HhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 1111100 0 00 012478999999999999999998764
No 120
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=1.4e-25 Score=155.05 Aligned_cols=158 Identities=18% Similarity=0.273 Sum_probs=126.5
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHHhcCCcc-ccCCCCCccee--EEEeC--CeEEEEEEcCChhhhHHhHHhhhccCCE
Q 029453 16 LWQKEAKILFLGLDNSGKTTLLHMLKDERLV-QHQPTQYPTSE--ELSIG--KIKFKAFDLGGHQMARRVWKDYYAKVDA 90 (193)
Q Consensus 16 ~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~~--~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 90 (193)
-..+-+||+++|.+++|||-|+.++..+++. ...+|.+.... .+..+ .....+|||.||++|+....+|++.+.+
T Consensus 10 ~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvG 89 (222)
T KOG0087|consen 10 EYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVG 89 (222)
T ss_pred ccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccce
Confidence 3557899999999999999999999999988 45556665433 33444 4678999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC--CCCCHHHHHHhhCCCccccCCCcccCCCCCCccE
Q 029453 91 VVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIP--YAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPL 168 (193)
Q Consensus 91 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (193)
+++|+|+++..+|+.+..|+.++. .+..+++++++|+||+||. +....++....-.. ...
T Consensus 90 AllVYDITr~~Tfenv~rWL~ELR-dhad~nivimLvGNK~DL~~lraV~te~~k~~Ae~-----------------~~l 151 (222)
T KOG0087|consen 90 ALLVYDITRRQTFENVERWLKELR-DHADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEK-----------------EGL 151 (222)
T ss_pred eEEEEechhHHHHHHHHHHHHHHH-hcCCCCeEEEEeecchhhhhccccchhhhHhHHHh-----------------cCc
Confidence 999999999999999999999996 4566799999999999996 33333332111111 124
Q ss_pred EEEEEeeecCCChhHHHHhhhhh
Q 029453 169 EVFMCSIVRKMGYGEGFKWLSQY 191 (193)
Q Consensus 169 ~~~~~Sa~~~~gi~~~~~~i~~~ 191 (193)
.++++||..+.|+++.|+.+...
T Consensus 152 ~f~EtSAl~~tNVe~aF~~~l~~ 174 (222)
T KOG0087|consen 152 FFLETSALDATNVEKAFERVLTE 174 (222)
T ss_pred eEEEecccccccHHHHHHHHHHH
Confidence 56999999999999999887654
No 121
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=4.4e-25 Score=145.04 Aligned_cols=155 Identities=20% Similarity=0.261 Sum_probs=120.9
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc--eeEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEE
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPT--SEELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAV 91 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~i 91 (193)
+..-+|++++|++|+|||+|++++...++.. ...|.+.. ...++.++ ..+.+|||.|+++|++....|++.+.+.
T Consensus 6 YDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGA 85 (214)
T KOG0086|consen 6 YDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGA 85 (214)
T ss_pred hhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccce
Confidence 3456799999999999999999999888764 33354433 33444443 6899999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC--HHHHHHhhCCCccccCCCcccCCCCCCccEE
Q 029453 92 VYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAAS--EDELRYHMGLTNFTTGKGNVNLDNTNVRPLE 169 (193)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (193)
++|+|+++.++|..+..|+.... ....+++-+++++||.||.++.+ ..|....-.. ....
T Consensus 86 lLVYD~TsrdsfnaLtnWL~DaR-~lAs~nIvviL~GnKkDL~~~R~VtflEAs~FaqE-----------------nel~ 147 (214)
T KOG0086|consen 86 LLVYDITSRDSFNALTNWLTDAR-TLASPNIVVILCGNKKDLDPEREVTFLEASRFAQE-----------------NELM 147 (214)
T ss_pred EEEEeccchhhHHHHHHHHHHHH-hhCCCcEEEEEeCChhhcChhhhhhHHHHHhhhcc-----------------ccee
Confidence 99999999999999999999884 34557888999999999974433 3232222111 2246
Q ss_pred EEEEeeecCCChhHHHHhhh
Q 029453 170 VFMCSIVRKMGYGEGFKWLS 189 (193)
Q Consensus 170 ~~~~Sa~~~~gi~~~~~~i~ 189 (193)
+.++||++|+|++|.|-...
T Consensus 148 flETSa~TGeNVEEaFl~c~ 167 (214)
T KOG0086|consen 148 FLETSALTGENVEEAFLKCA 167 (214)
T ss_pred eeeecccccccHHHHHHHHH
Confidence 79999999999999886543
No 122
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=5.3e-26 Score=148.83 Aligned_cols=159 Identities=19% Similarity=0.210 Sum_probs=125.5
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc--eeE--EEeCCeEEEEEEcCChhhhHHhHHhhhccCCEE
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPT--SEE--LSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAV 91 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~--~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~i 91 (193)
++--+||+++|++|+|||+|++++..+-+++ ...|.+.. ..+ +...+..+.+|||.|+++|++....|++.++++
T Consensus 4 ykflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahal 83 (213)
T KOG0095|consen 4 YKFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHAL 83 (213)
T ss_pred cceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceE
Confidence 3456899999999999999999999888774 44455432 234 444568899999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC-CCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEE
Q 029453 92 VYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIP-YAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEV 170 (193)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (193)
|+|+|++...+|..+..|+.++-.. .....--++|+||+|+. +.+.++++-+++.... ..-+
T Consensus 84 ilvydiscqpsfdclpewlreie~y-an~kvlkilvgnk~d~~drrevp~qigeefs~~q----------------dmyf 146 (213)
T KOG0095|consen 84 ILVYDISCQPSFDCLPEWLREIEQY-ANNKVLKILVGNKIDLADRREVPQQIGEEFSEAQ----------------DMYF 146 (213)
T ss_pred EEEEecccCcchhhhHHHHHHHHHH-hhcceEEEeeccccchhhhhhhhHHHHHHHHHhh----------------hhhh
Confidence 9999999999999999999998643 33456678999999997 3345555555544333 1346
Q ss_pred EEEeeecCCChhHHHHhhhhhc
Q 029453 171 FMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 171 ~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
+++||++-.|++.+|..+.-++
T Consensus 147 letsakea~nve~lf~~~a~rl 168 (213)
T KOG0095|consen 147 LETSAKEADNVEKLFLDLACRL 168 (213)
T ss_pred hhhcccchhhHHHHHHHHHHHH
Confidence 8899999999999999886543
No 123
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.93 E-value=1.5e-24 Score=157.21 Aligned_cols=157 Identities=18% Similarity=0.310 Sum_probs=120.4
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCcc-ccCCCCCcceeEEEe----CCeEEEEEEcCChhhhHHhHHhhhccCCEE
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLV-QHQPTQYPTSEELSI----GKIKFKAFDLGGHQMARRVWKDYYAKVDAV 91 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~~~~~~----~~~~~~~~D~~g~~~~~~~~~~~~~~~d~i 91 (193)
....+||+++|++|||||||++++..+.+. .+.+|.+.......+ +...+.+||++|++.+...+..++..++++
T Consensus 6 ~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~ 85 (215)
T PTZ00132 6 EVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQCA 85 (215)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCEE
Confidence 446789999999999999999988777765 455566654443332 457899999999999888888888999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEE
Q 029453 92 VYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVF 171 (193)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (193)
++|+|+++..++.....|+..+.... .+.|+++++||+|+.......+....... ..+.++
T Consensus 86 i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~i~lv~nK~Dl~~~~~~~~~~~~~~~-----------------~~~~~~ 146 (215)
T PTZ00132 86 IIMFDVTSRITYKNVPNWHRDIVRVC--ENIPIVLVGNKVDVKDRQVKARQITFHRK-----------------KNLQYY 146 (215)
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECccCccccCCHHHHHHHHH-----------------cCCEEE
Confidence 99999999999998888888876432 57899999999998632221111111100 124789
Q ss_pred EEeeecCCChhHHHHhhhhhc
Q 029453 172 MCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 172 ~~Sa~~~~gi~~~~~~i~~~l 192 (193)
++||++|.|++++|.+|.+.+
T Consensus 147 e~Sa~~~~~v~~~f~~ia~~l 167 (215)
T PTZ00132 147 DISAKSNYNFEKPFLWLARRL 167 (215)
T ss_pred EEeCCCCCCHHHHHHHHHHHH
Confidence 999999999999999998754
No 124
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.93 E-value=1.1e-25 Score=146.97 Aligned_cols=151 Identities=24% Similarity=0.395 Sum_probs=120.9
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCccccCC-CCCc--ceeEEEeC--CeEEEEEEcCChhhhHHhHHhhhccCCEEEE
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERLVQHQP-TQYP--TSEELSIG--KIKFKAFDLGGHQMARRVWKDYYAKVDAVVY 93 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~-t~~~--~~~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 93 (193)
.-++.+|+|.+|+|||+|+.++..+.+...+. |.+. ...++.++ ..++.+||+.|++.|+.+...+++..+++++
T Consensus 7 hLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~v 86 (198)
T KOG0079|consen 7 HLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIV 86 (198)
T ss_pred HHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEE
Confidence 44678999999999999999999888875443 4443 33444444 4789999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC-C-CCCHHH---HHHhhCCCccccCCCcccCCCCCCccE
Q 029453 94 LIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIP-Y-AASEDE---LRYHMGLTNFTTGKGNVNLDNTNVRPL 168 (193)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~-~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (193)
|+|+++.++|.....|+.++.+.. +..|-++|+||.|.+ + ....++ +...+++
T Consensus 87 VYDVTn~ESF~Nv~rWLeei~~nc--dsv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgi-------------------- 144 (198)
T KOG0079|consen 87 VYDVTNGESFNNVKRWLEEIRNNC--DSVPKVLVGNKNDDPERRVVDTEDARAFALQMGI-------------------- 144 (198)
T ss_pred EEECcchhhhHhHHHHHHHHHhcC--ccccceecccCCCCccceeeehHHHHHHHHhcCc--------------------
Confidence 999999999999999999995432 578899999999997 2 222222 3333333
Q ss_pred EEEEEeeecCCChhHHHHhhhhh
Q 029453 169 EVFMCSIVRKMGYGEGFKWLSQY 191 (193)
Q Consensus 169 ~~~~~Sa~~~~gi~~~~~~i~~~ 191 (193)
..|++||++++|++..|..|.++
T Consensus 145 e~FETSaKe~~NvE~mF~cit~q 167 (198)
T KOG0079|consen 145 ELFETSAKENENVEAMFHCITKQ 167 (198)
T ss_pred hheehhhhhcccchHHHHHHHHH
Confidence 45899999999999999998764
No 125
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.93 E-value=5.9e-25 Score=142.53 Aligned_cols=166 Identities=35% Similarity=0.606 Sum_probs=149.4
Q ss_pred CCCCcccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCC-eEEEEEEcCChhhhHHhHHhhhccCCEEEE
Q 029453 15 GLWQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGK-IKFKAFDLGGHQMARRVWKDYYAKVDAVVY 93 (193)
Q Consensus 15 ~~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 93 (193)
....+++||+++|-.++|||||+.++.+.......||.+.+...+.+.+ +.+.+||.+|+...+..|.-|+.+.|.+||
T Consensus 12 s~t~rEirilllGldnAGKTT~LKqL~sED~~hltpT~GFn~k~v~~~g~f~LnvwDiGGqr~IRpyWsNYyenvd~lIy 91 (185)
T KOG0074|consen 12 SRTRREIRILLLGLDNAGKTTFLKQLKSEDPRHLTPTNGFNTKKVEYDGTFHLNVWDIGGQRGIRPYWSNYYENVDGLIY 91 (185)
T ss_pred CCCcceEEEEEEecCCCcchhHHHHHccCChhhccccCCcceEEEeecCcEEEEEEecCCccccchhhhhhhhccceEEE
Confidence 3457999999999999999999999998888888899999999999876 899999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEE
Q 029453 94 LIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMC 173 (193)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (193)
|+|.+|...|++....+.+++...+....|+.+..||-|+..+...++....+++.-++ .+.+.+..|
T Consensus 92 VIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~eeia~klnl~~lr------------dRswhIq~c 159 (185)
T KOG0074|consen 92 VIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVEEIALKLNLAGLR------------DRSWHIQEC 159 (185)
T ss_pred EEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchHHHHHhcchhhhh------------hceEEeeeC
Confidence 99999999999999999999988888899999999999999888888888777766532 156899999
Q ss_pred eeecCCChhHHHHhhhhhc
Q 029453 174 SIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 174 Sa~~~~gi~~~~~~i~~~l 192 (193)
|+.+++|+.+-.+|++...
T Consensus 160 sals~eg~~dg~~wv~sn~ 178 (185)
T KOG0074|consen 160 SALSLEGSTDGSDWVQSNP 178 (185)
T ss_pred ccccccCccCcchhhhcCC
Confidence 9999999999999998654
No 126
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.93 E-value=1.6e-24 Score=152.59 Aligned_cols=149 Identities=21% Similarity=0.209 Sum_probs=104.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCc-------c-ccCC----------CCCcceeEEEe-----CCeEEEEEEcCChhhhH
Q 029453 22 KILFLGLDNSGKTTLLHMLKDERL-------V-QHQP----------TQYPTSEELSI-----GKIKFKAFDLGGHQMAR 78 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~~~-------~-~~~~----------t~~~~~~~~~~-----~~~~~~~~D~~g~~~~~ 78 (193)
+|+++|++|+|||||++++.+... . ...+ +.........+ .+..+.+|||||++++.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 689999999999999999986421 1 0111 11111222222 45778999999999998
Q ss_pred HhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCH---HHHHHhhCCCccccCC
Q 029453 79 RVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASE---DELRYHMGLTNFTTGK 155 (193)
Q Consensus 79 ~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~---~~~~~~~~~~~~~~~~ 155 (193)
..+..++..+|++++|+|+++..+.+....+.... . .++|+++|+||+|+...... +++.+.++..
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~-~----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~------ 150 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL-E----NNLEIIPVINKIDLPSADPERVKQQIEDVLGLD------ 150 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH-H----cCCCEEEEEECCCCCcCCHHHHHHHHHHHhCCC------
Confidence 88888999999999999999865554444443222 1 46899999999998643221 2233332221
Q ss_pred CcccCCCCCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 156 GNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
...++++||++|.|+++++++|.+.+
T Consensus 151 -----------~~~~~~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 151 -----------PSEAILVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred -----------cccEEEeeccCCCCHHHHHHHHHhhC
Confidence 13589999999999999999998764
No 127
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.93 E-value=1.2e-24 Score=165.83 Aligned_cols=155 Identities=22% Similarity=0.244 Sum_probs=113.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcc-ccC--CCCCcceeEEEe-CCeEEEEEEcCChhh-------hHHhHHhhhccCC
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLV-QHQ--PTQYPTSEELSI-GKIKFKAFDLGGHQM-------ARRVWKDYYAKVD 89 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~-~~~--~t~~~~~~~~~~-~~~~~~~~D~~g~~~-------~~~~~~~~~~~~d 89 (193)
..|+++|.||||||||++++.+.+.. ..+ +|..++...+.+ ....+.+||+||..+ ....+..+++.++
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~ 238 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIERTR 238 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhhhcC
Confidence 47999999999999999999876533 222 367778888887 457899999999632 2233445677899
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhCC-CCCCCcEEEEeeCCCCCCCCCHHH--HHHhhCCCccccCCCcccCCCCCCc
Q 029453 90 AVVYLIDAYDKERFSESKRELDALLSDE-ALADVPFLILGNKIDIPYAASEDE--LRYHMGLTNFTTGKGNVNLDNTNVR 166 (193)
Q Consensus 90 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~pviiv~nK~Dl~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (193)
++++|+|+++.++++....|...+.... ...++|+++|+||+|+.......+ ..... .. .
T Consensus 239 vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~--~~---------------~ 301 (335)
T PRK12299 239 LLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALEL--AA---------------L 301 (335)
T ss_pred EEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHH--Hh---------------c
Confidence 9999999998777777777777765432 124789999999999974332221 11111 11 1
Q ss_pred cEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 167 PLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 167 ~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
..+++++||++++|+++++++|.+.+
T Consensus 302 ~~~i~~iSAktg~GI~eL~~~L~~~l 327 (335)
T PRK12299 302 GGPVFLISAVTGEGLDELLRALWELL 327 (335)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 24789999999999999999998765
No 128
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.93 E-value=9.3e-25 Score=154.97 Aligned_cols=166 Identities=16% Similarity=0.286 Sum_probs=110.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce-eEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEEEEE
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPTS-EELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVVYLI 95 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 95 (193)
+.||+++|++|||||||++++..+.+.. ..+|..... ..+...+ ..+.+||++|++.+.......+..++++++++
T Consensus 1 ~~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~ 80 (187)
T cd04129 1 RRKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF 80 (187)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence 3589999999999999999998776653 333333222 2333343 56889999999887766666678999999999
Q ss_pred eCCChhhHHHHHH-HHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEe
Q 029453 96 DAYDKERFSESKR-ELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCS 174 (193)
Q Consensus 96 d~~~~~~~~~~~~-~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 174 (193)
|+++.+++..+.. |+..+... .++.|+++|+||+|+.......+............+. ..+ ...+...+++||
T Consensus 81 ~i~~~~s~~~~~~~~~~~i~~~--~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~e~S 154 (187)
T cd04129 81 AVDTPDSLENVRTKWIEEVRRY--CPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGK---RVA-KEIGAKKYMECS 154 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHH---HHH-HHhCCcEEEEcc
Confidence 9999999988864 66655432 2469999999999985321110000000000000000 000 001234789999
Q ss_pred eecCCChhHHHHhhhhh
Q 029453 175 IVRKMGYGEGFKWLSQY 191 (193)
Q Consensus 175 a~~~~gi~~~~~~i~~~ 191 (193)
|++|.|++++|+++.+.
T Consensus 155 a~~~~~v~~~f~~l~~~ 171 (187)
T cd04129 155 ALTGEGVDDVFEAATRA 171 (187)
T ss_pred CCCCCCHHHHHHHHHHH
Confidence 99999999999999864
No 129
>PRK15494 era GTPase Era; Provisional
Probab=99.93 E-value=2.9e-24 Score=164.73 Aligned_cols=154 Identities=20% Similarity=0.255 Sum_probs=108.0
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCccccCC----CCCcceeEEEeCCeEEEEEEcCChhhh-H-------HhHHhhh
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQHQP----TQYPTSEELSIGKIKFKAFDLGGHQMA-R-------RVWKDYY 85 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~D~~g~~~~-~-------~~~~~~~ 85 (193)
.+..+|+++|.+|||||||+|++.+..+....+ |.......+..++..+.+|||||+.+. . ......+
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l 129 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSSL 129 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHHh
Confidence 456799999999999999999999887653322 444445566778889999999997421 1 1111246
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCC
Q 029453 86 AKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNV 165 (193)
Q Consensus 86 ~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (193)
..+|++++|+|..+. +.....++...+.. .+.|+++|+||+|+... ...++.+.+....
T Consensus 130 ~~aDvil~VvD~~~s--~~~~~~~il~~l~~---~~~p~IlViNKiDl~~~-~~~~~~~~l~~~~--------------- 188 (339)
T PRK15494 130 HSADLVLLIIDSLKS--FDDITHNILDKLRS---LNIVPIFLLNKIDIESK-YLNDIKAFLTENH--------------- 188 (339)
T ss_pred hhCCEEEEEEECCCC--CCHHHHHHHHHHHh---cCCCEEEEEEhhcCccc-cHHHHHHHHHhcC---------------
Confidence 789999999998763 44444333333332 25677889999998643 3334444433221
Q ss_pred ccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 166 RPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 166 ~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
....++++||++|.|+++++++|.+.+
T Consensus 189 ~~~~i~~iSAktg~gv~eL~~~L~~~l 215 (339)
T PRK15494 189 PDSLLFPISALSGKNIDGLLEYITSKA 215 (339)
T ss_pred CCcEEEEEeccCccCHHHHHHHHHHhC
Confidence 235799999999999999999998764
No 130
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.93 E-value=6.5e-24 Score=152.65 Aligned_cols=153 Identities=19% Similarity=0.235 Sum_probs=107.9
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCccc---cCCCCCcceeEEEeCCe-EEEEEEcCChhh---------hHHhHHhh
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQ---HQPTQYPTSEELSIGKI-KFKAFDLGGHQM---------ARRVWKDY 84 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~~~-~~~~~D~~g~~~---------~~~~~~~~ 84 (193)
...++|+++|++|||||||++++.+..... ..+|..+....+.+++. .+.+|||||+.. +...+ ..
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~-~~ 117 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPHQLVEAFRSTL-EE 117 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCCceEEEeCCCccccCCCHHHHHHHHHHH-HH
Confidence 456899999999999999999999886432 22345555556666554 899999999722 22222 23
Q ss_pred hccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCC
Q 029453 85 YAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTN 164 (193)
Q Consensus 85 ~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (193)
+..+|++++|+|++++.+......+...+ ......++|+++|+||+|+.+..... ....
T Consensus 118 ~~~~d~ii~v~D~~~~~~~~~~~~~~~~l-~~~~~~~~~viiV~NK~Dl~~~~~~~---~~~~----------------- 176 (204)
T cd01878 118 VAEADLLLHVVDASDPDYEEQIETVEKVL-KELGAEDIPMILVLNKIDLLDDEELE---ERLE----------------- 176 (204)
T ss_pred HhcCCeEEEEEECCCCChhhHHHHHHHHH-HHcCcCCCCEEEEEEccccCChHHHH---HHhh-----------------
Confidence 56799999999999887665544444333 33334578999999999996543221 1110
Q ss_pred CccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 165 VRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 165 ~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
....+++++||+++.|+++++++|.+.|
T Consensus 177 ~~~~~~~~~Sa~~~~gi~~l~~~L~~~~ 204 (204)
T cd01878 177 AGRPDAVFISAKTGEGLDELLEAIEELL 204 (204)
T ss_pred cCCCceEEEEcCCCCCHHHHHHHHHhhC
Confidence 0235789999999999999999998764
No 131
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.93 E-value=9.8e-25 Score=148.22 Aligned_cols=141 Identities=25% Similarity=0.320 Sum_probs=100.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcc-ccCC--CCCcceeEEEeCCeEEEEEEcCChh------hhHHhHHhhh--ccCC
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLV-QHQP--TQYPTSEELSIGKIKFKAFDLGGHQ------MARRVWKDYY--AKVD 89 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~------~~~~~~~~~~--~~~d 89 (193)
++|+++|+||||||||+|++.+.+.. ...| |.......+.+++..+.++|+||.. ........++ .+.|
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D 80 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEKPD 80 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTSSS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCC
Confidence 58999999999999999999998854 3334 6667778889999999999999932 1223333343 5799
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC----CCHHHHHHhhCCCccccCCCcccCCCCCC
Q 029453 90 AVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYA----ASEDELRYHMGLTNFTTGKGNVNLDNTNV 165 (193)
Q Consensus 90 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (193)
++++|+|+++.+ ........+.. .++|+++++||+|+.+. ...+.+.+.++
T Consensus 81 ~ii~VvDa~~l~---r~l~l~~ql~e----~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg------------------ 135 (156)
T PF02421_consen 81 LIIVVVDATNLE---RNLYLTLQLLE----LGIPVVVVLNKMDEAERKGIEIDAEKLSERLG------------------ 135 (156)
T ss_dssp EEEEEEEGGGHH---HHHHHHHHHHH----TTSSEEEEEETHHHHHHTTEEE-HHHHHHHHT------------------
T ss_pred EEEEECCCCCHH---HHHHHHHHHHH----cCCCEEEEEeCHHHHHHcCCEECHHHHHHHhC------------------
Confidence 999999998764 33333444433 37999999999998622 22334555543
Q ss_pred ccEEEEEEeeecCCChhHHHHhh
Q 029453 166 RPLEVFMCSIVRKMGYGEGFKWL 188 (193)
Q Consensus 166 ~~~~~~~~Sa~~~~gi~~~~~~i 188 (193)
++++++||++++|++++++.|
T Consensus 136 --~pvi~~sa~~~~g~~~L~~~I 156 (156)
T PF02421_consen 136 --VPVIPVSARTGEGIDELKDAI 156 (156)
T ss_dssp --S-EEEEBTTTTBTHHHHHHHH
T ss_pred --CCEEEEEeCCCcCHHHHHhhC
Confidence 367999999999999999875
No 132
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.92 E-value=5e-24 Score=159.23 Aligned_cols=150 Identities=17% Similarity=0.173 Sum_probs=101.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccccCC----CCCcceeEEEeCCeEEEEEEcCChhhh--------HHhHHhhhccCC
Q 029453 22 KILFLGLDNSGKTTLLHMLKDERLVQHQP----TQYPTSEELSIGKIKFKAFDLGGHQMA--------RRVWKDYYAKVD 89 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~D~~g~~~~--------~~~~~~~~~~~d 89 (193)
+|+++|.+|||||||+|++.+.+....++ |..........++..+.+|||||.... .......+..+|
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aD 81 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVD 81 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCC
Confidence 68999999999999999999987643222 333333334455678999999996432 112234578899
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEE
Q 029453 90 AVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLE 169 (193)
Q Consensus 90 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (193)
++++|+|+++..+.. ..+...+.. .+.|+++|+||+|+.+.....+....+.... ...+
T Consensus 82 vvl~VvD~~~~~~~~---~~i~~~l~~---~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~---------------~~~~ 140 (270)
T TIGR00436 82 LILFVVDSDQWNGDG---EFVLTKLQN---LKRPVVLTRNKLDNKFKDKLLPLIDKYAILE---------------DFKD 140 (270)
T ss_pred EEEEEEECCCCCchH---HHHHHHHHh---cCCCEEEEEECeeCCCHHHHHHHHHHHHhhc---------------CCCc
Confidence 999999999875443 222333222 4789999999999963221111111111111 1137
Q ss_pred EEEEeeecCCChhHHHHhhhhhc
Q 029453 170 VFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 170 ~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
++++||++|.|+++++++|.+.+
T Consensus 141 v~~iSA~~g~gi~~L~~~l~~~l 163 (270)
T TIGR00436 141 IVPISALTGDNTSFLAAFIEVHL 163 (270)
T ss_pred eEEEecCCCCCHHHHHHHHHHhC
Confidence 89999999999999999998764
No 133
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.92 E-value=2.9e-24 Score=149.01 Aligned_cols=151 Identities=20% Similarity=0.127 Sum_probs=100.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCcc---c-c--CCCCCcceeEEEeC-CeEEEEEEcCChhhhHHhHHhhhccCCEEEEE
Q 029453 22 KILFLGLDNSGKTTLLHMLKDERLV---Q-H--QPTQYPTSEELSIG-KIKFKAFDLGGHQMARRVWKDYYAKVDAVVYL 94 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~~~~---~-~--~~t~~~~~~~~~~~-~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 94 (193)
.|+++|++|||||||++++.+.... . . ..|.......+.+. +..+.+|||||++++......++..+|++++|
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~V 81 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKFIKNMLAGAGGIDLVLLV 81 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHHHHHHHhhhhcCCEEEEE
Confidence 6899999999999999999864321 1 1 11333333445555 77899999999998877777778899999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCH----HHHHHhhCCCccccCCCcccCCCCCCccEEE
Q 029453 95 IDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASE----DELRYHMGLTNFTTGKGNVNLDNTNVRPLEV 170 (193)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (193)
+|+++... ......+..+ ... ...|+++++||+|+...... +++.+.+.... ....++
T Consensus 82 ~d~~~~~~-~~~~~~~~~~-~~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~ 143 (164)
T cd04171 82 VAADEGIM-PQTREHLEIL-ELL--GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTF--------------LADAPI 143 (164)
T ss_pred EECCCCcc-HhHHHHHHHH-HHh--CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcC--------------cCCCcE
Confidence 99987311 1111111111 111 12499999999999643211 22222222110 023579
Q ss_pred EEEeeecCCChhHHHHhhhh
Q 029453 171 FMCSIVRKMGYGEGFKWLSQ 190 (193)
Q Consensus 171 ~~~Sa~~~~gi~~~~~~i~~ 190 (193)
+++||++|.|+++++++|..
T Consensus 144 ~~~Sa~~~~~v~~l~~~l~~ 163 (164)
T cd04171 144 FPVSAVTGEGIEELKEYLDE 163 (164)
T ss_pred EEEeCCCCcCHHHHHHHHhh
Confidence 99999999999999999864
No 134
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.92 E-value=8.8e-24 Score=161.04 Aligned_cols=157 Identities=20% Similarity=0.216 Sum_probs=114.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcc-cc--CCCCCcceeEEEeCC-eEEEEEEcCChhh-------hHHhHHhhhccCC
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLV-QH--QPTQYPTSEELSIGK-IKFKAFDLGGHQM-------ARRVWKDYYAKVD 89 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~-~~--~~t~~~~~~~~~~~~-~~~~~~D~~g~~~-------~~~~~~~~~~~~d 89 (193)
..|+++|.+|||||||++++.+.+.. .. .+|..++...+.+.+ ..+.+||+||..+ ....+...+++++
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhierad 237 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHIERTR 237 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHHHhhC
Confidence 47999999999999999999976533 22 236677788888876 8999999999642 2233344567899
Q ss_pred EEEEEEeCCCh---hhHHHHHHHHHHHHhCC-CCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCC
Q 029453 90 AVVYLIDAYDK---ERFSESKRELDALLSDE-ALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNV 165 (193)
Q Consensus 90 ~ii~v~d~~~~---~~~~~~~~~~~~~~~~~-~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (193)
++++|+|+++. ++++....+...+.... ...++|+++|+||+|+......+++.+.+....
T Consensus 238 ~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~~~~--------------- 302 (329)
T TIGR02729 238 VLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEELAELLKELKKAL--------------- 302 (329)
T ss_pred EEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHHHHHHHHHHHHHc---------------
Confidence 99999999976 55666666665554321 235789999999999975433333333332111
Q ss_pred ccEEEEEEeeecCCChhHHHHhhhhhcC
Q 029453 166 RPLEVFMCSIVRKMGYGEGFKWLSQYIK 193 (193)
Q Consensus 166 ~~~~~~~~Sa~~~~gi~~~~~~i~~~l~ 193 (193)
..+++++||++++|+++++++|.+.+.
T Consensus 303 -~~~vi~iSAktg~GI~eL~~~I~~~l~ 329 (329)
T TIGR02729 303 -GKPVFPISALTGEGLDELLYALAELLE 329 (329)
T ss_pred -CCcEEEEEccCCcCHHHHHHHHHHHhC
Confidence 146899999999999999999988763
No 135
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.92 E-value=2.5e-23 Score=149.19 Aligned_cols=169 Identities=20% Similarity=0.299 Sum_probs=117.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEe----CCeEEEEEEcCChhhhHHhHHhhhccC-CEEEEEEe
Q 029453 22 KILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSI----GKIKFKAFDLGGHQMARRVWKDYYAKV-DAVVYLID 96 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~----~~~~~~~~D~~g~~~~~~~~~~~~~~~-d~ii~v~d 96 (193)
+|+++|++|||||||++++..+.+..+.++..+....... .+..+.+||+|||.+++..+..+++.+ +++|+|+|
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD 81 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSIEPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVD 81 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcEeecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEE
Confidence 6899999999999999999998876555544444444433 257899999999999988888888998 99999999
Q ss_pred CCCh-hhHHHHHHHHHHHHhCC--CCCCCcEEEEeeCCCCCCCCCHHH----HHHhhCCCccccCC--------Ccc---
Q 029453 97 AYDK-ERFSESKRELDALLSDE--ALADVPFLILGNKIDIPYAASEDE----LRYHMGLTNFTTGK--------GNV--- 158 (193)
Q Consensus 97 ~~~~-~~~~~~~~~~~~~~~~~--~~~~~pviiv~nK~Dl~~~~~~~~----~~~~~~~~~~~~~~--------~~~--- 158 (193)
+++. +++.....++..++... ...+.|+++++||+|+......+. ++.+++...-.+.. ...
T Consensus 82 ~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~~~~~i~~~le~ei~~~~~~r~~~l~~~~~~~~~~~~ 161 (203)
T cd04105 82 SATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAKPAKKIKEQLEKELNTLRESRSKSLSSLDGDEGSKES 161 (203)
T ss_pred CccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccCCHHHHHHHHHHHHHHHHHHHhccccccccccccccc
Confidence 9987 56666666665554321 125799999999999986555443 33222211111000 000
Q ss_pred -------cCC-CCCCccEEEEEEeeecCC-ChhHHHHhhhh
Q 029453 159 -------NLD-NTNVRPLEVFMCSIVRKM-GYGEGFKWLSQ 190 (193)
Q Consensus 159 -------~~~-~~~~~~~~~~~~Sa~~~~-gi~~~~~~i~~ 190 (193)
... ......+.++.+|++.+. |++++.+||.+
T Consensus 162 ~~~~~~~~f~f~~~~~~v~~~~~s~~~~~~~~~~~~~w~~~ 202 (203)
T cd04105 162 LGDKGGKSFEFDQLEGKVEFLEGSVKVDGGGIDGWEEWIDE 202 (203)
T ss_pred cccccCcceeeccCceeEEEEEeEEecCCCChHhHHHHHhh
Confidence 000 011135789999998887 69999999975
No 136
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.92 E-value=1.7e-23 Score=145.82 Aligned_cols=157 Identities=18% Similarity=0.212 Sum_probs=105.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccccC---CCCCcceeEEEe---CCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEE
Q 029453 22 KILFLGLDNSGKTTLLHMLKDERLVQHQ---PTQYPTSEELSI---GKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLI 95 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~~~~~~~---~t~~~~~~~~~~---~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 95 (193)
.|+++|.+|||||||++++..+.+.... .|.......+.. .+..+.+|||||++.+...+..++..+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 6899999999999999999988765431 122222233343 3678999999999988888888889999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEee
Q 029453 96 DAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSI 175 (193)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 175 (193)
|+++....+ ....+..+ .. .++|+++|+||+|+.... .+.+...+...... .. ......++++++|+
T Consensus 82 d~~~~~~~~-~~~~~~~~-~~---~~~p~ivv~NK~Dl~~~~-~~~~~~~~~~~~~~-~~------~~~~~~~~~~~~Sa 148 (168)
T cd01887 82 AADDGVMPQ-TIEAIKLA-KA---ANVPFIVALNKIDKPNAN-PERVKNELSELGLQ-GE------DEWGGDVQIVPTSA 148 (168)
T ss_pred ECCCCccHH-HHHHHHHH-HH---cCCCEEEEEEceeccccc-HHHHHHHHHHhhcc-cc------ccccCcCcEEEeec
Confidence 998753211 11122222 22 478999999999986332 22222222111000 00 00113468999999
Q ss_pred ecCCChhHHHHhhhhh
Q 029453 176 VRKMGYGEGFKWLSQY 191 (193)
Q Consensus 176 ~~~~gi~~~~~~i~~~ 191 (193)
++|.|+++++++|.+.
T Consensus 149 ~~~~gi~~l~~~l~~~ 164 (168)
T cd01887 149 KTGEGIDDLLEAILLL 164 (168)
T ss_pred ccCCCHHHHHHHHHHh
Confidence 9999999999999865
No 137
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.91 E-value=1.7e-23 Score=138.98 Aligned_cols=159 Identities=21% Similarity=0.321 Sum_probs=124.2
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce----eEEEe-CCeEEEEEEcCChhhhHHhHHhhhccCC
Q 029453 16 LWQKEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPTS----EELSI-GKIKFKAFDLGGHQMARRVWKDYYAKVD 89 (193)
Q Consensus 16 ~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~----~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~d 89 (193)
.....+++.++|.+-+|||||++.+..+++.. ..||.+... ..++- ....+.+|||.|+++|++....|+.+.-
T Consensus 4 if~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsv 83 (213)
T KOG0091|consen 4 IFHYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSV 83 (213)
T ss_pred ceEEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhccc
Confidence 45678999999999999999999999999884 456665432 12222 2368999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCc-EEEEeeCCCCC--CCCCHHHHHHhhCCCccccCCCcccCCCCCCc
Q 029453 90 AVVYLIDAYDKERFSESKRELDALLSDEALADVP-FLILGNKIDIP--YAASEDELRYHMGLTNFTTGKGNVNLDNTNVR 166 (193)
Q Consensus 90 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-viiv~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (193)
++++|+|.+|.++|+-...|+.+.......+.++ ..+|++|+||. +..+.+|.+..-.. .
T Consensus 84 gvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~-----------------h 146 (213)
T KOG0091|consen 84 GVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAAS-----------------H 146 (213)
T ss_pred ceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHh-----------------c
Confidence 9999999999999999999998876554434444 57788999997 44454443222111 2
Q ss_pred cEEEEEEeeecCCChhHHHHhhhhh
Q 029453 167 PLEVFMCSIVRKMGYGEGFKWLSQY 191 (193)
Q Consensus 167 ~~~~~~~Sa~~~~gi~~~~~~i~~~ 191 (193)
...++++||++|.|+++.|..|.+.
T Consensus 147 gM~FVETSak~g~NVeEAF~mlaqe 171 (213)
T KOG0091|consen 147 GMAFVETSAKNGCNVEEAFDMLAQE 171 (213)
T ss_pred CceEEEecccCCCcHHHHHHHHHHH
Confidence 2467999999999999999998764
No 138
>PRK04213 GTP-binding protein; Provisional
Probab=99.91 E-value=2.7e-23 Score=149.06 Aligned_cols=157 Identities=20% Similarity=0.268 Sum_probs=101.0
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcceeEEEeCCeEEEEEEcCC-----------hhhhHHhHHhhh
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPTSEELSIGKIKFKAFDLGG-----------HQMARRVWKDYY 85 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~D~~g-----------~~~~~~~~~~~~ 85 (193)
...++|+++|++|||||||++++.+..+.. ..++.......+.++ .+.+||||| ++.+...+..++
T Consensus 7 ~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 84 (201)
T PRK04213 7 DRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRKPNHYDWG--DFILTDLPGFGFMSGVPKEVQEKIKDEIVRYI 84 (201)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeCceEEeec--ceEEEeCCccccccccCHHHHHHHHHHHHHHH
Confidence 457899999999999999999999877542 233322223333333 689999999 456665555554
Q ss_pred c----cCCEEEEEEeCCChhhHH---------HHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCC--CHHHHHHhhCCCc
Q 029453 86 A----KVDAVVYLIDAYDKERFS---------ESKRELDALLSDEALADVPFLILGNKIDIPYAA--SEDELRYHMGLTN 150 (193)
Q Consensus 86 ~----~~d~ii~v~d~~~~~~~~---------~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~--~~~~~~~~~~~~~ 150 (193)
. .++++++|+|.+....+. .....+...+.. .++|+++|+||+|+.... ..+++.+.++...
T Consensus 85 ~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~ 161 (201)
T PRK04213 85 EDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE---LGIPPIVAVNKMDKIKNRDEVLDEIAERLGLYP 161 (201)
T ss_pred HhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH---cCCCeEEEEECccccCcHHHHHHHHHHHhcCCc
Confidence 3 467889999986532110 011122222222 479999999999996433 2233444444311
Q ss_pred -cccCCCcccCCCCCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 151 -FTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 151 -~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
+. ....+++++||++| |+++++++|.+.+
T Consensus 162 ~~~------------~~~~~~~~~SA~~g-gi~~l~~~l~~~~ 191 (201)
T PRK04213 162 PWR------------QWQDIIAPISAKKG-GIEELKEAIRKRL 191 (201)
T ss_pred ccc------------ccCCcEEEEecccC-CHHHHHHHHHHhh
Confidence 00 01136899999999 9999999998754
No 139
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.91 E-value=3.2e-23 Score=147.01 Aligned_cols=163 Identities=18% Similarity=0.160 Sum_probs=111.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccccC-------------------CCCCcceeEEEeCCeEEEEEEcCChhhhHHhHH
Q 029453 22 KILFLGLDNSGKTTLLHMLKDERLVQHQ-------------------PTQYPTSEELSIGKIKFKAFDLGGHQMARRVWK 82 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~~~~~~~-------------------~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~ 82 (193)
+|+++|.+|||||||++.+.+....... .+...........+..+.+|||||+..+...+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~ 80 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI 80 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence 4899999999999999999877655322 122233445566778999999999998888888
Q ss_pred hhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHH----HHHHhhCCCccccCCCcc
Q 029453 83 DYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASED----ELRYHMGLTNFTTGKGNV 158 (193)
Q Consensus 83 ~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~----~~~~~~~~~~~~~~~~~~ 158 (193)
.++..+|++++|+|++++.... ....+..+. . .+.|+++++||+|+....... ++.+.++.......+
T Consensus 81 ~~~~~~d~~i~v~d~~~~~~~~-~~~~~~~~~-~---~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 152 (189)
T cd00881 81 RGLSVSDGAILVVDANEGVQPQ-TREHLRIAR-E---GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTK--- 152 (189)
T ss_pred HHHHhcCEEEEEEECCCCCcHH-HHHHHHHHH-H---CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchh---
Confidence 8889999999999998764322 223333332 2 479999999999997533322 233333221100000
Q ss_pred cCCCCCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 159 NLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 159 ~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
..........+++++||++|.|+++++++|.+++
T Consensus 153 ~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l 186 (189)
T cd00881 153 EEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHL 186 (189)
T ss_pred hhhcccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence 0000011357899999999999999999998875
No 140
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.91 E-value=4.3e-24 Score=145.04 Aligned_cols=134 Identities=22% Similarity=0.271 Sum_probs=91.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCeEEEEEEcCChh-----hhHHhHHhhhccCCEEEEEEe
Q 029453 22 KILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQ-----MARRVWKDYYAKVDAVVYLID 96 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~-----~~~~~~~~~~~~~d~ii~v~d 96 (193)
||+++|++|||||||++++.+.... ..+| ....+.. .+|||||+. .+.... ..++++|++++|+|
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~-~~~t-----~~~~~~~---~~iDt~G~~~~~~~~~~~~~-~~~~~ad~vilv~d 71 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL-YKKT-----QAVEYND---GAIDTPGEYVENRRLYSALI-VTAADADVIALVQS 71 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc-cccc-----eeEEEcC---eeecCchhhhhhHHHHHHHH-HHhhcCCEEEEEec
Confidence 8999999999999999999887642 2222 2233333 689999973 233332 34789999999999
Q ss_pred CCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC-CCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEee
Q 029453 97 AYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYA-ASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSI 175 (193)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 175 (193)
++++.++.. ..+ .... ..|+++|+||+|+.+. ...++........ ...+++++||
T Consensus 72 ~~~~~s~~~-~~~-~~~~------~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~----------------~~~~~~~~Sa 127 (142)
T TIGR02528 72 ATDPESRFP-PGF-ASIF------VKPVIGLVTKIDLAEADVDIERAKELLETA----------------GAEPIFEISS 127 (142)
T ss_pred CCCCCcCCC-hhH-HHhc------cCCeEEEEEeeccCCcccCHHHHHHHHHHc----------------CCCcEEEEec
Confidence 999876643 222 2221 2499999999999642 2222222222111 1136899999
Q ss_pred ecCCChhHHHHhhh
Q 029453 176 VRKMGYGEGFKWLS 189 (193)
Q Consensus 176 ~~~~gi~~~~~~i~ 189 (193)
++|.|++++|++|.
T Consensus 128 ~~~~gi~~l~~~l~ 141 (142)
T TIGR02528 128 VDEQGLEALVDYLN 141 (142)
T ss_pred CCCCCHHHHHHHHh
Confidence 99999999999985
No 141
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.91 E-value=1.2e-23 Score=147.68 Aligned_cols=153 Identities=21% Similarity=0.222 Sum_probs=106.6
Q ss_pred EEcCCCCCHHHHHHHHhcCCcc-c--cCCCCCcceeEEEeC-CeEEEEEEcCChhhh----HH---hHHhhhccCCEEEE
Q 029453 25 FLGLDNSGKTTLLHMLKDERLV-Q--HQPTQYPTSEELSIG-KIKFKAFDLGGHQMA----RR---VWKDYYAKVDAVVY 93 (193)
Q Consensus 25 i~G~~~~GKssl~~~l~~~~~~-~--~~~t~~~~~~~~~~~-~~~~~~~D~~g~~~~----~~---~~~~~~~~~d~ii~ 93 (193)
++|++|||||||++++.+.... . ..+|..+....+.++ +..+.+|||||+... .. .+...+..+|++++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~ 80 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAILH 80 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEEE
Confidence 5899999999999999988642 1 123455666667777 889999999997321 11 22345678999999
Q ss_pred EEeCCCh------hhHHHHHHHHHHHHhCCC------CCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCC
Q 029453 94 LIDAYDK------ERFSESKRELDALLSDEA------LADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLD 161 (193)
Q Consensus 94 v~d~~~~------~~~~~~~~~~~~~~~~~~------~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (193)
|+|+++. .++.....+...+..... ..+.|+++|+||+|+.......+........
T Consensus 81 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~------------ 148 (176)
T cd01881 81 VVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELAL------------ 148 (176)
T ss_pred EEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhc------------
Confidence 9999987 456666666666643322 1479999999999997443333321001111
Q ss_pred CCCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 162 NTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 162 ~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
.....++++||+++.|+++++++|...+
T Consensus 149 ---~~~~~~~~~Sa~~~~gl~~l~~~l~~~~ 176 (176)
T cd01881 149 ---EEGAEVVPISAKTEEGLDELIRAIYELL 176 (176)
T ss_pred ---CCCCCEEEEehhhhcCHHHHHHHHHhhC
Confidence 1235689999999999999999997653
No 142
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.91 E-value=7.3e-23 Score=140.65 Aligned_cols=153 Identities=22% Similarity=0.341 Sum_probs=111.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce--eEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEEEE
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPTS--EELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVVYL 94 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 94 (193)
.+||+++|.+|||||||++++.+..... ..++..... ..+..++ ..+.+||+||+..+...+......++.++.+
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~ 80 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV 80 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence 3699999999999999999999888542 333443333 2355666 7789999999999988888888889999999
Q ss_pred EeCCCh-hhHHHHH-HHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEE
Q 029453 95 IDAYDK-ERFSESK-RELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFM 172 (193)
Q Consensus 95 ~d~~~~-~~~~~~~-~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (193)
+|.... .++.... .+...+..... .+.|+++++||+|+.......+....+.... ..++++
T Consensus 81 ~d~~~~v~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~----------------~~~~~~ 143 (161)
T TIGR00231 81 FDIVILVLDVEEILEKQTKEIIHHAE-SNVPIILVGNKIDLRDAKLKTHVAFLFAKLN----------------GEPIIP 143 (161)
T ss_pred EEEeeeehhhhhHhHHHHHHHHHhcc-cCCcEEEEEEcccCCcchhhHHHHHHHhhcc----------------CCceEE
Confidence 999765 5555444 44444443322 3789999999999975433333333332221 235999
Q ss_pred EeeecCCChhHHHHhhh
Q 029453 173 CSIVRKMGYGEGFKWLS 189 (193)
Q Consensus 173 ~Sa~~~~gi~~~~~~i~ 189 (193)
+||++|.|+++++++|.
T Consensus 144 ~sa~~~~gv~~~~~~l~ 160 (161)
T TIGR00231 144 LSAETGKNIDSAFKIVE 160 (161)
T ss_pred eecCCCCCHHHHHHHhh
Confidence 99999999999999974
No 143
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.91 E-value=2.9e-23 Score=147.25 Aligned_cols=156 Identities=23% Similarity=0.304 Sum_probs=127.1
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc-eeEEEe--CCeEEEEEEcCChhhhHHhHHhhhccCCEEEEE
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPT-SEELSI--GKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYL 94 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~-~~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 94 (193)
+.+||+++|.+|+|||+|..++.++.+.. +.||.+.. ...+.. ....+.++||+|++++..+...++..++++++|
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lV 81 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLV 81 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCccccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEE
Confidence 56899999999999999999999999884 45666532 233333 346788999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEE
Q 029453 95 IDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY--AASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFM 172 (193)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (193)
+++++..+|+....++..+.+.......|+++|+||+|+.+ ..+.++-..- . . .+.+.+++
T Consensus 82 ysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~l-a-~---------------~~~~~f~E 144 (196)
T KOG0395|consen 82 YSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKAL-A-R---------------SWGCAFIE 144 (196)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHH-H-H---------------hcCCcEEE
Confidence 99999999999999999997666667799999999999984 5555542222 0 0 13456899
Q ss_pred EeeecCCChhHHHHhhhhh
Q 029453 173 CSIVRKMGYGEGFKWLSQY 191 (193)
Q Consensus 173 ~Sa~~~~gi~~~~~~i~~~ 191 (193)
+||+.+.+++++|..|...
T Consensus 145 ~Sak~~~~v~~~F~~L~r~ 163 (196)
T KOG0395|consen 145 TSAKLNYNVDEVFYELVRE 163 (196)
T ss_pred eeccCCcCHHHHHHHHHHH
Confidence 9999999999999998764
No 144
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.91 E-value=3.6e-23 Score=147.68 Aligned_cols=115 Identities=17% Similarity=0.338 Sum_probs=94.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce--eEEEe-------CCeEEEEEEcCChhhhHHhHHhhhccCCE
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPTS--EELSI-------GKIKFKAFDLGGHQMARRVWKDYYAKVDA 90 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~-------~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 90 (193)
+||+++|.+|+|||||++++.++.+.. +.+|.+... ..+.+ ....+.+||++|++.+..+...+++++|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 589999999999999999999988764 445655322 23333 23679999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhCC------------------CCCCCcEEEEeeCCCCCC
Q 029453 91 VVYLIDAYDKERFSESKRELDALLSDE------------------ALADVPFLILGNKIDIPY 135 (193)
Q Consensus 91 ii~v~d~~~~~~~~~~~~~~~~~~~~~------------------~~~~~pviiv~nK~Dl~~ 135 (193)
+|+|+|++++++++.+..|+..+.... ...+.|+++|+||+|+.+
T Consensus 81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~ 143 (202)
T cd04102 81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIP 143 (202)
T ss_pred EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchh
Confidence 999999999999999999999886531 224789999999999963
No 145
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.91 E-value=3.2e-23 Score=142.73 Aligned_cols=145 Identities=21% Similarity=0.266 Sum_probs=100.1
Q ss_pred EEEcCCCCCHHHHHHHHhcCCcc--ccCC--CCCcceeEEEeCCeEEEEEEcCChhhhHH--------hHHhhhccCCEE
Q 029453 24 LFLGLDNSGKTTLLHMLKDERLV--QHQP--TQYPTSEELSIGKIKFKAFDLGGHQMARR--------VWKDYYAKVDAV 91 (193)
Q Consensus 24 ~i~G~~~~GKssl~~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~~--------~~~~~~~~~d~i 91 (193)
+++|.+|+|||||++++.+.... ...+ |...........+..+.+|||||+..... .....+..+|++
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~i 80 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEADVI 80 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEE
Confidence 47999999999999999987532 2222 33344556667788999999999876433 334456789999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEE
Q 029453 92 VYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVF 171 (193)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (193)
++|+|+.+..+... ..+...+.. .+.|+++|+||+|+.......+....+ ...+++
T Consensus 81 i~v~d~~~~~~~~~--~~~~~~~~~---~~~piiiv~nK~D~~~~~~~~~~~~~~-------------------~~~~~~ 136 (157)
T cd01894 81 LFVVDGREGLTPAD--EEIAKYLRK---SKKPVILVVNKVDNIKEEDEAAEFYSL-------------------GFGEPI 136 (157)
T ss_pred EEEEeccccCCccH--HHHHHHHHh---cCCCEEEEEECcccCChHHHHHHHHhc-------------------CCCCeE
Confidence 99999987533222 233333333 369999999999997532221111111 112578
Q ss_pred EEeeecCCChhHHHHhhhhhc
Q 029453 172 MCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 172 ~~Sa~~~~gi~~~~~~i~~~l 192 (193)
++|+++|.|+++++++|.+++
T Consensus 137 ~~Sa~~~~gv~~l~~~l~~~~ 157 (157)
T cd01894 137 PISAEHGRGIGDLLDAILELL 157 (157)
T ss_pred EEecccCCCHHHHHHHHHhhC
Confidence 999999999999999998764
No 146
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.91 E-value=6.7e-23 Score=139.66 Aligned_cols=150 Identities=25% Similarity=0.335 Sum_probs=111.5
Q ss_pred EEcCCCCCHHHHHHHHhcCCc-c-ccCCCCCcceeEEEeC----CeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCC
Q 029453 25 FLGLDNSGKTTLLHMLKDERL-V-QHQPTQYPTSEELSIG----KIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAY 98 (193)
Q Consensus 25 i~G~~~~GKssl~~~l~~~~~-~-~~~~t~~~~~~~~~~~----~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~ 98 (193)
++|++|+|||||++++.+... . ...++. ......... +..+.+||+||+..........++.+|++++|+|++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 79 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT 79 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence 589999999999999998876 2 223333 444444433 678999999999988887788889999999999999
Q ss_pred ChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHH-HhhCCCccccCCCcccCCCCCCccEEEEEEeeec
Q 029453 99 DKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELR-YHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVR 177 (193)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 177 (193)
++.+......++..........+.|+++++||+|+.......... ....... ...+++++|+.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~s~~~ 144 (157)
T cd00882 80 DRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKE---------------LGVPYFETSAKT 144 (157)
T ss_pred CHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhh---------------cCCcEEEEecCC
Confidence 998887777764444444455789999999999997544433321 1111111 336899999999
Q ss_pred CCChhHHHHhhhh
Q 029453 178 KMGYGEGFKWLSQ 190 (193)
Q Consensus 178 ~~gi~~~~~~i~~ 190 (193)
+.|+++++++|.+
T Consensus 145 ~~~i~~~~~~l~~ 157 (157)
T cd00882 145 GENVEELFEELAE 157 (157)
T ss_pred CCChHHHHHHHhC
Confidence 9999999999863
No 147
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.91 E-value=1.1e-22 Score=156.39 Aligned_cols=151 Identities=20% Similarity=0.231 Sum_probs=108.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCcc-c--cCCCCCcceeEEEe-CCeEEEEEEcCCh---------hhhHHhHHhhh
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERLV-Q--HQPTQYPTSEELSI-GKIKFKAFDLGGH---------QMARRVWKDYY 85 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~~-~--~~~t~~~~~~~~~~-~~~~~~~~D~~g~---------~~~~~~~~~~~ 85 (193)
..++|+++|.+|||||||+|++.+.... . ..+|.++....+.+ ++..+.+|||+|. +.+...+ ..+
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~lie~f~~tl-e~~ 266 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVAAFRATL-EEV 266 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCCceEEEEecCcccccCCHHHHHHHHHHH-HHH
Confidence 4489999999999999999999987743 2 23466777777777 5689999999997 2233332 346
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCC
Q 029453 86 AKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNV 165 (193)
Q Consensus 86 ~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (193)
.++|++++|+|++++.+......+. .++......++|+++|+||+|+.+.. ++.....
T Consensus 267 ~~ADlil~VvD~s~~~~~~~~~~~~-~~L~~l~~~~~piIlV~NK~Dl~~~~---~v~~~~~------------------ 324 (351)
T TIGR03156 267 READLLLHVVDASDPDREEQIEAVE-KVLEELGAEDIPQLLVYNKIDLLDEP---RIERLEE------------------ 324 (351)
T ss_pred HhCCEEEEEEECCCCchHHHHHHHH-HHHHHhccCCCCEEEEEEeecCCChH---hHHHHHh------------------
Confidence 7899999999999887655543333 33333333578999999999996421 1111000
Q ss_pred ccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 166 RPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 166 ~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
...+++++||++|.|+++++++|.+.+
T Consensus 325 ~~~~~i~iSAktg~GI~eL~~~I~~~~ 351 (351)
T TIGR03156 325 GYPEAVFVSAKTGEGLDLLLEAIAERL 351 (351)
T ss_pred CCCCEEEEEccCCCCHHHHHHHHHhhC
Confidence 012579999999999999999998753
No 148
>COG1159 Era GTPase [General function prediction only]
Probab=99.91 E-value=8.8e-23 Score=149.01 Aligned_cols=155 Identities=17% Similarity=0.230 Sum_probs=114.2
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCccccCC----CCCcceeEEEeCCeEEEEEEcCChhhhH--------HhHHhhh
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQHQP----TQYPTSEELSIGKIKFKAFDLGGHQMAR--------RVWKDYY 85 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~D~~g~~~~~--------~~~~~~~ 85 (193)
.+.--|+++|.||+|||||+|++.+.+..-.++ |+..-......++.++.++||||..+.. ......+
T Consensus 4 ~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl 83 (298)
T COG1159 4 FKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSAL 83 (298)
T ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHh
Confidence 456689999999999999999999999764333 4444556666778999999999943322 2223346
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC-HHHHHHhhCCCccccCCCcccCCCCC
Q 029453 86 AKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAAS-EDELRYHMGLTNFTTGKGNVNLDNTN 164 (193)
Q Consensus 86 ~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (193)
+.+|++++|+|++++ +.....++...+.. .+.|+++++||+|+..... ...+...+....
T Consensus 84 ~dvDlilfvvd~~~~--~~~~d~~il~~lk~---~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~-------------- 144 (298)
T COG1159 84 KDVDLILFVVDADEG--WGPGDEFILEQLKK---TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLL-------------- 144 (298)
T ss_pred ccCcEEEEEEecccc--CCccHHHHHHHHhh---cCCCeEEEEEccccCCcHHHHHHHHHHHHhhC--------------
Confidence 789999999999885 23444444444433 4689999999999876555 344555544443
Q ss_pred CccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 165 VRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 165 ~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
...+++++||++|.|++.+.+.|..++
T Consensus 145 -~f~~ivpiSA~~g~n~~~L~~~i~~~L 171 (298)
T COG1159 145 -PFKEIVPISALKGDNVDTLLEIIKEYL 171 (298)
T ss_pred -CcceEEEeeccccCCHHHHHHHHHHhC
Confidence 445899999999999999999998775
No 149
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.90 E-value=9.4e-23 Score=163.01 Aligned_cols=151 Identities=19% Similarity=0.205 Sum_probs=105.8
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCccccCC----CCCcceeEEEeCCeEEEEEEcCChhh--------hHHhHHhhh
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQHQP----TQYPTSEELSIGKIKFKAFDLGGHQM--------ARRVWKDYY 85 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~D~~g~~~--------~~~~~~~~~ 85 (193)
...++|+++|.+|||||||+|++.+.......+ |.........+++..+.+|||||++. +......++
T Consensus 36 ~~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~ 115 (472)
T PRK03003 36 GPLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAM 115 (472)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHH
Confidence 455799999999999999999999876543222 33334455667788899999999752 334445578
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCC
Q 029453 86 AKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNV 165 (193)
Q Consensus 86 ~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (193)
+.+|++++|+|++++.+... ..+...+.. .++|+++|+||+|+..... +....+....
T Consensus 116 ~~aD~il~VvD~~~~~s~~~--~~i~~~l~~---~~~piilV~NK~Dl~~~~~--~~~~~~~~g~--------------- 173 (472)
T PRK03003 116 RTADAVLFVVDATVGATATD--EAVARVLRR---SGKPVILAANKVDDERGEA--DAAALWSLGL--------------- 173 (472)
T ss_pred HhCCEEEEEEECCCCCCHHH--HHHHHHHHH---cCCCEEEEEECccCCccch--hhHHHHhcCC---------------
Confidence 89999999999998754332 233333332 4799999999999864221 1111111111
Q ss_pred ccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 166 RPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 166 ~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
-..+++||++|.|+++++++|.+.+
T Consensus 174 --~~~~~iSA~~g~gi~eL~~~i~~~l 198 (472)
T PRK03003 174 --GEPHPVSALHGRGVGDLLDAVLAAL 198 (472)
T ss_pred --CCeEEEEcCCCCCcHHHHHHHHhhc
Confidence 1247999999999999999998754
No 150
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.90 E-value=1.2e-22 Score=144.77 Aligned_cols=157 Identities=17% Similarity=0.128 Sum_probs=101.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC----ccc------cCCCCCcceeEEEeC--------------CeEEEEEEcCChhh
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDER----LVQ------HQPTQYPTSEELSIG--------------KIKFKAFDLGGHQM 76 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~----~~~------~~~t~~~~~~~~~~~--------------~~~~~~~D~~g~~~ 76 (193)
++|+++|++|+|||||++++.+.. +.. ...|.......+.+. +..+.+|||||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 589999999999999999998631 111 112333333333333 67899999999987
Q ss_pred hHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHH----HHHHhhCCCccc
Q 029453 77 ARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASED----ELRYHMGLTNFT 152 (193)
Q Consensus 77 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~----~~~~~~~~~~~~ 152 (193)
+........+.+|++++|+|+++....+....+. +... .+.|+++++||+|+......+ ++.+.+.... .
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~---~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~-~ 154 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEI---LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTL-E 154 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHH-H
Confidence 6555555567789999999998753333222221 1111 267999999999987432222 2222221111 0
Q ss_pred cCCCcccCCCCCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 153 TGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
.. .....+++++||++|.|+++++++|.+++
T Consensus 155 ~~---------~~~~~~vi~iSa~~g~gi~~L~~~l~~~~ 185 (192)
T cd01889 155 KT---------RFKNSPIIPVSAKPGGGEAELGKDLNNLI 185 (192)
T ss_pred hc---------CcCCCCEEEEeccCCCCHHHHHHHHHhcc
Confidence 00 00235799999999999999999998764
No 151
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.90 E-value=1.5e-22 Score=139.37 Aligned_cols=143 Identities=22% Similarity=0.219 Sum_probs=102.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc--cCC--CCCcceeEEEeCCeEEEEEEcCChhhhHH--------hHHhhhccC
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLVQ--HQP--TQYPTSEELSIGKIKFKAFDLGGHQMARR--------VWKDYYAKV 88 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~~--~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~~--------~~~~~~~~~ 88 (193)
++|+++|++|+|||||++++.+..... ..+ +.......+...+..+.+|||||+..... .....+..+
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 81 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEEA 81 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhhC
Confidence 589999999999999999999877432 122 22233445666778999999999654321 122356789
Q ss_pred CEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccE
Q 029453 89 DAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPL 168 (193)
Q Consensus 89 d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (193)
|++++|+|++++.+......+.. ..+.|+++|+||+|+...... ... ....
T Consensus 82 ~~~v~v~d~~~~~~~~~~~~~~~-------~~~~~vi~v~nK~D~~~~~~~--------~~~--------------~~~~ 132 (157)
T cd04164 82 DLVLFVIDASRGLDEEDLEILEL-------PADKPIIVVLNKSDLLPDSEL--------LSL--------------LAGK 132 (157)
T ss_pred CEEEEEEECCCCCCHHHHHHHHh-------hcCCCEEEEEEchhcCCcccc--------ccc--------------cCCC
Confidence 99999999998655544433222 257999999999999743322 000 1235
Q ss_pred EEEEEeeecCCChhHHHHhhhhhc
Q 029453 169 EVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 169 ~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
+++++||+++.|+++++++|.+.+
T Consensus 133 ~~~~~Sa~~~~~v~~l~~~l~~~~ 156 (157)
T cd04164 133 PIIAISAKTGEGLDELKEALLELA 156 (157)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhh
Confidence 789999999999999999998765
No 152
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.90 E-value=2e-22 Score=139.81 Aligned_cols=154 Identities=21% Similarity=0.247 Sum_probs=104.6
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCccccCC----CCCcceeEEEeCCeEEEEEEcCChhhhH--------HhHHhhhc
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERLVQHQP----TQYPTSEELSIGKIKFKAFDLGGHQMAR--------RVWKDYYA 86 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~D~~g~~~~~--------~~~~~~~~ 86 (193)
...+|+++|++|||||||++++.+.+.....+ +...........+..+.+|||||..... ......+.
T Consensus 2 ~~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 81 (168)
T cd04163 2 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALK 81 (168)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999876543222 1122223334456789999999964322 22334567
Q ss_pred cCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC-CCCCHHHHHHhhCCCccccCCCcccCCCCCC
Q 029453 87 KVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIP-YAASEDELRYHMGLTNFTTGKGNVNLDNTNV 165 (193)
Q Consensus 87 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (193)
.+|++++|+|++++. .....++...+.. .+.|+++|+||+|+. ......++...+....
T Consensus 82 ~~d~i~~v~d~~~~~--~~~~~~~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~--------------- 141 (168)
T cd04163 82 DVDLVLFVVDASEPI--GEGDEFILELLKK---SKTPVILVLNKIDLVKDKEDLLPLLEKLKELG--------------- 141 (168)
T ss_pred hCCEEEEEEECCCcc--CchHHHHHHHHHH---hCCCEEEEEEchhccccHHHHHHHHHHHHhcc---------------
Confidence 899999999999872 2223333333322 268999999999997 3333333443333222
Q ss_pred ccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 166 RPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 166 ~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
...+++++|++++.|+++++++|.+.+
T Consensus 142 ~~~~~~~~s~~~~~~~~~l~~~l~~~~ 168 (168)
T cd04163 142 PFAEIFPISALKGENVDELLEEIVKYL 168 (168)
T ss_pred CCCceEEEEeccCCChHHHHHHHHhhC
Confidence 235789999999999999999998764
No 153
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.90 E-value=7.2e-23 Score=145.39 Aligned_cols=162 Identities=20% Similarity=0.174 Sum_probs=110.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCcc--c-------------------cCCCCCcceeEEE--eCCeEEEEEEcCChh
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERLV--Q-------------------HQPTQYPTSEELS--IGKIKFKAFDLGGHQ 75 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~~--~-------------------~~~t~~~~~~~~~--~~~~~~~~~D~~g~~ 75 (193)
+..+|+++|+.++|||||+++|...... . ..-|.......+. ..+..+.++|||||.
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 5679999999999999999999743311 0 1114444555666 778999999999999
Q ss_pred hhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCC
Q 029453 76 MARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGK 155 (193)
Q Consensus 76 ~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 155 (193)
.+.......+..+|++|+|+|+.++- ......+...+.. .++|+++++||+|+.. ....+..+++....++...
T Consensus 82 ~f~~~~~~~~~~~D~ailvVda~~g~--~~~~~~~l~~~~~---~~~p~ivvlNK~D~~~-~~~~~~~~~~~~~l~~~~~ 155 (188)
T PF00009_consen 82 DFIKEMIRGLRQADIAILVVDANDGI--QPQTEEHLKILRE---LGIPIIVVLNKMDLIE-KELEEIIEEIKEKLLKEYG 155 (188)
T ss_dssp HHHHHHHHHHTTSSEEEEEEETTTBS--THHHHHHHHHHHH---TT-SEEEEEETCTSSH-HHHHHHHHHHHHHHHHHTT
T ss_pred ceeecccceecccccceeeeeccccc--ccccccccccccc---cccceEEeeeeccchh-hhHHHHHHHHHHHhccccc
Confidence 99888888899999999999998763 2323332333323 4789999999999971 1111222222111111100
Q ss_pred CcccCCCCCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 156 GNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
.. .....+++++||++|.|++++++.|.+.+
T Consensus 156 ~~------~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~ 186 (188)
T PF00009_consen 156 EN------GEEIVPVIPISALTGDGIDELLEALVELL 186 (188)
T ss_dssp ST------TTSTEEEEEEBTTTTBTHHHHHHHHHHHS
T ss_pred cC------ccccceEEEEecCCCCCHHHHHHHHHHhC
Confidence 00 00257999999999999999999998765
No 154
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.90 E-value=9.9e-23 Score=140.55 Aligned_cols=145 Identities=23% Similarity=0.212 Sum_probs=100.6
Q ss_pred EEcCCCCCHHHHHHHHhcCCcc-ccCC--CCCcceeEEEeCCeEEEEEEcCChhhhHH------hHHhhh--ccCCEEEE
Q 029453 25 FLGLDNSGKTTLLHMLKDERLV-QHQP--TQYPTSEELSIGKIKFKAFDLGGHQMARR------VWKDYY--AKVDAVVY 93 (193)
Q Consensus 25 i~G~~~~GKssl~~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~~------~~~~~~--~~~d~ii~ 93 (193)
++|.+|+|||||++++.+.... ...+ |.......+.+++..+.+|||||+..+.. ....++ +.+|++++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~ 80 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVN 80 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEEE
Confidence 5799999999999999887633 2222 44555666777788999999999876542 234445 48999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEE
Q 029453 94 LIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMC 173 (193)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (193)
|+|+++++.. ..++..+.. .++|+++|+||+|+............+... ...+++++
T Consensus 81 v~d~~~~~~~---~~~~~~~~~----~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~----------------~~~~~~~i 137 (158)
T cd01879 81 VVDATNLERN---LYLTLQLLE----LGLPVVVALNMIDEAEKRGIKIDLDKLSEL----------------LGVPVVPT 137 (158)
T ss_pred EeeCCcchhH---HHHHHHHHH----cCCCEEEEEehhhhcccccchhhHHHHHHh----------------hCCCeEEE
Confidence 9999876432 223333322 378999999999997432221111111100 11468999
Q ss_pred eeecCCChhHHHHhhhhhc
Q 029453 174 SIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 174 Sa~~~~gi~~~~~~i~~~l 192 (193)
||++|.|+++++++|.+..
T Consensus 138 Sa~~~~~~~~l~~~l~~~~ 156 (158)
T cd01879 138 SARKGEGIDELKDAIAELA 156 (158)
T ss_pred EccCCCCHHHHHHHHHHHh
Confidence 9999999999999998764
No 155
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.90 E-value=2.3e-22 Score=160.79 Aligned_cols=157 Identities=17% Similarity=0.161 Sum_probs=108.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCcc--ccCC--CCCcceeEEEeCCeEEEEEEcCCh----------hhhHHhH-Hh
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERLV--QHQP--TQYPTSEELSIGKIKFKAFDLGGH----------QMARRVW-KD 83 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~~~D~~g~----------~~~~~~~-~~ 83 (193)
..++|+++|.+|||||||+|++.+.... ...+ |.......+.+++..+.+|||||. +.+.... ..
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~ 289 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTHA 289 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHHHHH
Confidence 4689999999999999999999988753 2222 444445667778888999999995 2222221 23
Q ss_pred hhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCC
Q 029453 84 YYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNT 163 (193)
Q Consensus 84 ~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (193)
++..+|++++|+|++++.+.+... ++..+.. .++|+++|+||+|+................. .
T Consensus 290 ~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~----~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l-~----------- 352 (472)
T PRK03003 290 AIEAAEVAVVLIDASEPISEQDQR-VLSMVIE----AGRALVLAFNKWDLVDEDRRYYLEREIDREL-A----------- 352 (472)
T ss_pred HHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH----cCCCEEEEEECcccCChhHHHHHHHHHHHhc-c-----------
Confidence 578899999999999886665543 3333332 4789999999999974322222222221111 0
Q ss_pred CCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 164 NVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 164 ~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
.....+++++||++|.|++++|+.|.+.+
T Consensus 353 ~~~~~~~~~~SAk~g~gv~~lf~~i~~~~ 381 (472)
T PRK03003 353 QVPWAPRVNISAKTGRAVDKLVPALETAL 381 (472)
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 00225789999999999999999997643
No 156
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.90 E-value=1.6e-23 Score=138.51 Aligned_cols=157 Identities=20% Similarity=0.239 Sum_probs=121.4
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccccCC-CCC--cceeEEEe--CCeEEEEEEcCChhhhHHhHHhhhccCCEE
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQP-TQY--PTSEELSI--GKIKFKAFDLGGHQMARRVWKDYYAKVDAV 91 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~-t~~--~~~~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~i 91 (193)
..-++|++++|..=+|||||+-+++.++|..... |.. .....++. ....+.+|||.|+++|...-+-|+...+++
T Consensus 10 ~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGa 89 (218)
T KOG0088|consen 10 KSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGA 89 (218)
T ss_pred CceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCce
Confidence 4467999999999999999999999888764332 111 12223333 345799999999999999988999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC--CCCCHHHHHHhhCCCccccCCCcccCCCCCCccEE
Q 029453 92 VYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIP--YAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLE 169 (193)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (193)
++|+|++|+++|+....|..++.... ...+-++||+||+||. +..+.++.+..-.-. ...
T Consensus 90 lLVyDITDrdSFqKVKnWV~Elr~ml-Gnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesv-----------------GA~ 151 (218)
T KOG0088|consen 90 LLVYDITDRDSFQKVKNWVLELRTML-GNEIELLIVGNKIDLEEERQVTRQEAEAYAESV-----------------GAL 151 (218)
T ss_pred EEEEeccchHHHHHHHHHHHHHHHHh-CCeeEEEEecCcccHHHhhhhhHHHHHHHHHhh-----------------chh
Confidence 99999999999999999999986433 3568899999999996 445554433322111 135
Q ss_pred EEEEeeecCCChhHHHHhhhhh
Q 029453 170 VFMCSIVRKMGYGEGFKWLSQY 191 (193)
Q Consensus 170 ~~~~Sa~~~~gi~~~~~~i~~~ 191 (193)
++++||+.+.||.++|+-|..+
T Consensus 152 y~eTSAk~N~Gi~elFe~Lt~~ 173 (218)
T KOG0088|consen 152 YMETSAKDNVGISELFESLTAK 173 (218)
T ss_pred heecccccccCHHHHHHHHHHH
Confidence 6899999999999999988654
No 157
>PRK00089 era GTPase Era; Reviewed
Probab=99.90 E-value=2e-22 Score=152.35 Aligned_cols=154 Identities=19% Similarity=0.227 Sum_probs=104.7
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCccccCC----CCCcceeEEEeCCeEEEEEEcCChhhh--------HHhHHhhhc
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERLVQHQP----TQYPTSEELSIGKIKFKAFDLGGHQMA--------RRVWKDYYA 86 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~D~~g~~~~--------~~~~~~~~~ 86 (193)
+.-.|+++|++|||||||+|.+.+.+.....+ |..........++..+.++||||.... .......+.
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~ 83 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLK 83 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHHHh
Confidence 56679999999999999999999887653322 222222233345678999999996432 122234567
Q ss_pred cCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC-CCHHHHHHhhCCCccccCCCcccCCCCCC
Q 029453 87 KVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYA-ASEDELRYHMGLTNFTTGKGNVNLDNTNV 165 (193)
Q Consensus 87 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (193)
.+|++++|+|+++. +.....++...+.. .+.|+++|+||+|+... ....+....+....
T Consensus 84 ~~D~il~vvd~~~~--~~~~~~~i~~~l~~---~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~--------------- 143 (292)
T PRK00089 84 DVDLVLFVVDADEK--IGPGDEFILEKLKK---VKTPVILVLNKIDLVKDKEELLPLLEELSELM--------------- 143 (292)
T ss_pred cCCEEEEEEeCCCC--CChhHHHHHHHHhh---cCCCEEEEEECCcCCCCHHHHHHHHHHHHhhC---------------
Confidence 89999999999883 23333344444332 46899999999999732 22223333332211
Q ss_pred ccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 166 RPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 166 ~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
...+++++||+++.|+++++++|.+.+
T Consensus 144 ~~~~i~~iSA~~~~gv~~L~~~L~~~l 170 (292)
T PRK00089 144 DFAEIVPISALKGDNVDELLDVIAKYL 170 (292)
T ss_pred CCCeEEEecCCCCCCHHHHHHHHHHhC
Confidence 235799999999999999999998764
No 158
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.90 E-value=1.9e-22 Score=159.87 Aligned_cols=146 Identities=19% Similarity=0.235 Sum_probs=107.2
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCcc--ccCC--CCCcceeEEEeCCeEEEEEEcCChhhhHHh--------HHhh
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLV--QHQP--TQYPTSEELSIGKIKFKAFDLGGHQMARRV--------WKDY 84 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~--------~~~~ 84 (193)
....++|+++|.+|||||||+|++.+.... ...+ |.+.....+.+++..+.+|||||+...... ...+
T Consensus 212 ~~~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~ 291 (449)
T PRK05291 212 LREGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERSREA 291 (449)
T ss_pred hhcCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCccHHHHHHHHHHHHH
Confidence 346689999999999999999999987642 2222 444555667788899999999997643221 2235
Q ss_pred hccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCC
Q 029453 85 YAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTN 164 (193)
Q Consensus 85 ~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (193)
+..+|++++|+|++++.+......+ .. ..+.|+++|+||+|+.+..... ..
T Consensus 292 ~~~aD~il~VvD~s~~~s~~~~~~l-~~------~~~~piiiV~NK~DL~~~~~~~--------~~-------------- 342 (449)
T PRK05291 292 IEEADLVLLVLDASEPLTEEDDEIL-EE------LKDKPVIVVLNKADLTGEIDLE--------EE-------------- 342 (449)
T ss_pred HHhCCEEEEEecCCCCCChhHHHHH-Hh------cCCCCcEEEEEhhhccccchhh--------hc--------------
Confidence 7889999999999988665533222 22 2578999999999996432221 01
Q ss_pred CccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 165 VRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 165 ~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
...+++++||++|.|+++++++|.+.+
T Consensus 343 -~~~~~i~iSAktg~GI~~L~~~L~~~l 369 (449)
T PRK05291 343 -NGKPVIRISAKTGEGIDELREAIKELA 369 (449)
T ss_pred -cCCceEEEEeeCCCCHHHHHHHHHHHH
Confidence 224689999999999999999998754
No 159
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.90 E-value=1.6e-22 Score=139.67 Aligned_cols=140 Identities=19% Similarity=0.170 Sum_probs=94.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCeEEEEEEcCChh----hhHHhHHhhhccCCEEEEEEeC
Q 029453 22 KILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQ----MARRVWKDYYAKVDAVVYLIDA 97 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~----~~~~~~~~~~~~~d~ii~v~d~ 97 (193)
+|+++|.+|+|||||+|++.+.... ......+.+... .+|||||.. ++.......+..+|++++|+|+
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~------~~~~~~v~~~~~--~~iDtpG~~~~~~~~~~~~~~~~~~ad~il~v~d~ 74 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTL------ARKTQAVEFNDK--GDIDTPGEYFSHPRWYHALITTLQDVDMLIYVHGA 74 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcc------CccceEEEECCC--CcccCCccccCCHHHHHHHHHHHhcCCEEEEEEeC
Confidence 7999999999999999998764311 122333344332 379999962 2322223447889999999999
Q ss_pred CChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeeec
Q 029453 98 YDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVR 177 (193)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 177 (193)
++.+++ ...++..+ ..++|+++++||+|+.. ...+++.+...... ...+++++||++
T Consensus 75 ~~~~s~--~~~~~~~~-----~~~~~ii~v~nK~Dl~~-~~~~~~~~~~~~~~---------------~~~p~~~~Sa~~ 131 (158)
T PRK15467 75 NDPESR--LPAGLLDI-----GVSKRQIAVISKTDMPD-ADVAATRKLLLETG---------------FEEPIFELNSHD 131 (158)
T ss_pred CCcccc--cCHHHHhc-----cCCCCeEEEEEccccCc-ccHHHHHHHHHHcC---------------CCCCEEEEECCC
Confidence 987654 22333332 13679999999999854 33333333222111 114899999999
Q ss_pred CCChhHHHHhhhhhc
Q 029453 178 KMGYGEGFKWLSQYI 192 (193)
Q Consensus 178 ~~gi~~~~~~i~~~l 192 (193)
|+|+++++++|.+.+
T Consensus 132 g~gi~~l~~~l~~~~ 146 (158)
T PRK15467 132 PQSVQQLVDYLASLT 146 (158)
T ss_pred ccCHHHHHHHHHHhc
Confidence 999999999998754
No 160
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.89 E-value=2.2e-22 Score=159.08 Aligned_cols=155 Identities=23% Similarity=0.274 Sum_probs=107.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcc-ccC--CCCCcceeEEEeCCeEEEEEEcCChhh-------hHHhHHhhhccCCE
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLV-QHQ--PTQYPTSEELSIGKIKFKAFDLGGHQM-------ARRVWKDYYAKVDA 90 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~-~~~--~t~~~~~~~~~~~~~~~~~~D~~g~~~-------~~~~~~~~~~~~d~ 90 (193)
..|+|+|.||||||||+|+|++.+.. ..+ +|..++...+.+.+..+.+||+||... ....+..+++.+++
T Consensus 160 adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhieradv 239 (500)
T PRK12296 160 ADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIERCAV 239 (500)
T ss_pred ceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHHHhcCE
Confidence 58999999999999999999976543 222 366788888888889999999999531 11122345678999
Q ss_pred EEEEEeCCCh----hhHHHHHHHHHHHHhCC----------CCCCCcEEEEeeCCCCCCCCCHHH-HHHhhCCCccccCC
Q 029453 91 VVYLIDAYDK----ERFSESKRELDALLSDE----------ALADVPFLILGNKIDIPYAASEDE-LRYHMGLTNFTTGK 155 (193)
Q Consensus 91 ii~v~d~~~~----~~~~~~~~~~~~~~~~~----------~~~~~pviiv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~ 155 (193)
+++|+|+++. +.+.....+...+.... ...++|+++|+||+|++......+ +...+..
T Consensus 240 Lv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e~l~~~l~~------- 312 (500)
T PRK12296 240 LVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAEFVRPELEA------- 312 (500)
T ss_pred EEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHHHHHHHHHH-------
Confidence 9999999752 23444443333332211 235789999999999964322221 2212110
Q ss_pred CcccCCCCCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 156 GNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
..++++++||+++.|+++++++|.+.+
T Consensus 313 ----------~g~~Vf~ISA~tgeGLdEL~~~L~ell 339 (500)
T PRK12296 313 ----------RGWPVFEVSAASREGLRELSFALAELV 339 (500)
T ss_pred ----------cCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 125799999999999999999998754
No 161
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.89 E-value=3.6e-22 Score=155.98 Aligned_cols=151 Identities=20% Similarity=0.293 Sum_probs=106.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCcc-ccC--CCCCcceeEEEeC-CeEEEEEEcCChhh-------hHHhHHhhhccCCE
Q 029453 22 KILFLGLDNSGKTTLLHMLKDERLV-QHQ--PTQYPTSEELSIG-KIKFKAFDLGGHQM-------ARRVWKDYYAKVDA 90 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~~~~-~~~--~t~~~~~~~~~~~-~~~~~~~D~~g~~~-------~~~~~~~~~~~~d~ 90 (193)
.|+++|.||||||||++++++.+.. ..+ +|..++...+.+. +..+.+||+||..+ ....+...++++++
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhier~~l 239 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIERTRV 239 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHHhhCCE
Confidence 8999999999999999999987633 222 3666777777776 78899999999632 12223344677999
Q ss_pred EEEEEeCCCh---hhHHHHHHHHHHHHhCC-CCCCCcEEEEeeCCCCCCCCC-HHHHHHhhCCCccccCCCcccCCCCCC
Q 029453 91 VVYLIDAYDK---ERFSESKRELDALLSDE-ALADVPFLILGNKIDIPYAAS-EDELRYHMGLTNFTTGKGNVNLDNTNV 165 (193)
Q Consensus 91 ii~v~d~~~~---~~~~~~~~~~~~~~~~~-~~~~~pviiv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (193)
+++|+|+++. +++.....+...+.... ...++|+++|+||+|+..... .+++.+.+.
T Consensus 240 lI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~~e~l~~l~~~l~------------------ 301 (424)
T PRK12297 240 IVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEAEENLEEFKEKLG------------------ 301 (424)
T ss_pred EEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCCHHHHHHHHHHhC------------------
Confidence 9999999854 45555555555554321 225799999999999842210 111222211
Q ss_pred ccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 166 RPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 166 ~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
.+++++||+++.|+++++++|.+.+
T Consensus 302 --~~i~~iSA~tgeGI~eL~~~L~~~l 326 (424)
T PRK12297 302 --PKVFPISALTGQGLDELLYAVAELL 326 (424)
T ss_pred --CcEEEEeCCCCCCHHHHHHHHHHHH
Confidence 3689999999999999999998754
No 162
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.89 E-value=9e-22 Score=155.32 Aligned_cols=150 Identities=21% Similarity=0.214 Sum_probs=106.2
Q ss_pred CCCCcccEEEEEcCCCCCHHHHHHHHhcCCcc--ccCC--CCCcceeEEEeCCeEEEEEEcCChhhhHHh--------HH
Q 029453 15 GLWQKEAKILFLGLDNSGKTTLLHMLKDERLV--QHQP--TQYPTSEELSIGKIKFKAFDLGGHQMARRV--------WK 82 (193)
Q Consensus 15 ~~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~--------~~ 82 (193)
......++|+++|++|||||||+|++.+.... ...+ |.......+.+++..+.+|||||+...... ..
T Consensus 198 ~~~~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~ 277 (442)
T TIGR00450 198 EKLDDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHADFVERLGIEKSF 277 (442)
T ss_pred HHhhcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccchhHHHHHHHHHHH
Confidence 34567899999999999999999999987532 3333 333345567788899999999997543221 23
Q ss_pred hhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCC
Q 029453 83 DYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDN 162 (193)
Q Consensus 83 ~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (193)
.+++.+|++++|+|++++.+.... ++..+.. .+.|+++|+||+|+.+. ..+++.+.
T Consensus 278 ~~~~~aD~il~V~D~s~~~s~~~~--~l~~~~~----~~~piIlV~NK~Dl~~~-~~~~~~~~----------------- 333 (442)
T TIGR00450 278 KAIKQADLVIYVLDASQPLTKDDF--LIIDLNK----SKKPFILVLNKIDLKIN-SLEFFVSS----------------- 333 (442)
T ss_pred HHHhhCCEEEEEEECCCCCChhHH--HHHHHhh----CCCCEEEEEECccCCCc-chhhhhhh-----------------
Confidence 467889999999999988665543 4444421 47899999999999643 22111111
Q ss_pred CCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 163 TNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 163 ~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
...+++.+||++ .|++++++.|.+.+
T Consensus 334 ---~~~~~~~vSak~-~gI~~~~~~L~~~i 359 (442)
T TIGR00450 334 ---KVLNSSNLSAKQ-LKIKALVDLLTQKI 359 (442)
T ss_pred ---cCCceEEEEEec-CCHHHHHHHHHHHH
Confidence 113568999998 68999998887654
No 163
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.89 E-value=1.2e-21 Score=139.86 Aligned_cols=148 Identities=21% Similarity=0.202 Sum_probs=99.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhc--CCccccC-------------C----CCCcceeEEEeCCeEEEEEEcCChhhhHHhHH
Q 029453 22 KILFLGLDNSGKTTLLHMLKD--ERLVQHQ-------------P----TQYPTSEELSIGKIKFKAFDLGGHQMARRVWK 82 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~--~~~~~~~-------------~----t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~ 82 (193)
+|+++|.+|+|||||++++.+ +.+.... . +.......+.+++..+.+|||||++.+...+.
T Consensus 4 ~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~ 83 (194)
T cd01891 4 NIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEVE 83 (194)
T ss_pred EEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHHH
Confidence 799999999999999999986 4333221 1 22223345667788999999999999999889
Q ss_pred hhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCH---HHHHHhhCCCccccCCCccc
Q 029453 83 DYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASE---DELRYHMGLTNFTTGKGNVN 159 (193)
Q Consensus 83 ~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~---~~~~~~~~~~~~~~~~~~~~ 159 (193)
.++..+|++++|+|+++.. ......++..... .++|+++|+||+|+...... +++...+.... ...
T Consensus 84 ~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~--~~~---- 152 (194)
T cd01891 84 RVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE----LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELG--ATE---- 152 (194)
T ss_pred HHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH----cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhC--Ccc----
Confidence 9999999999999998742 2222233333322 37899999999999643221 22222221100 000
Q ss_pred CCCCCCccEEEEEEeeecCCChhHH
Q 029453 160 LDNTNVRPLEVFMCSIVRKMGYGEG 184 (193)
Q Consensus 160 ~~~~~~~~~~~~~~Sa~~~~gi~~~ 184 (193)
....++++++||++|.|+.++
T Consensus 153 ----~~~~~~iv~~Sa~~g~~~~~~ 173 (194)
T cd01891 153 ----EQLDFPVLYASAKNGWASLNL 173 (194)
T ss_pred ----ccCccCEEEeehhcccccccc
Confidence 012358999999999877444
No 164
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.89 E-value=2.8e-22 Score=159.13 Aligned_cols=156 Identities=19% Similarity=0.198 Sum_probs=106.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCccc--cCC--CCCcceeEEEeCCeEEEEEEcCChhhhHH-----------hHHh
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERLVQ--HQP--TQYPTSEELSIGKIKFKAFDLGGHQMARR-----------VWKD 83 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~~~--~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~~-----------~~~~ 83 (193)
..++|+++|.+|+|||||+|++.+..... ..+ |.......+..++..+.+|||||+.+... ....
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~ 250 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLK 250 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHHHH
Confidence 45899999999999999999999876432 222 33334455666778999999999643211 1124
Q ss_pred hhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC-CCCCHHHHHHhhCCCccccCCCcccCCC
Q 029453 84 YYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIP-YAASEDELRYHMGLTNFTTGKGNVNLDN 162 (193)
Q Consensus 84 ~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (193)
+++.+|++++|+|++++.+.+.. ..+..+. . .++|+++|+||+|+. +....+++...+....
T Consensus 251 ~~~~ad~~ilV~D~~~~~~~~~~-~~~~~~~-~---~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~------------ 313 (429)
T TIGR03594 251 AIERADVVLLVLDATEGITEQDL-RIAGLIL-E---AGKALVIVVNKWDLVKDEKTREEFKKELRRKL------------ 313 (429)
T ss_pred HHHhCCEEEEEEECCCCccHHHH-HHHHHHH-H---cCCcEEEEEECcccCCCHHHHHHHHHHHHHhc------------
Confidence 57889999999999987544433 2233332 2 478999999999997 2222333333333221
Q ss_pred CCCccEEEEEEeeecCCChhHHHHhhhhh
Q 029453 163 TNVRPLEVFMCSIVRKMGYGEGFKWLSQY 191 (193)
Q Consensus 163 ~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~ 191 (193)
......+++++||++|.|++++++++.+.
T Consensus 314 ~~~~~~~vi~~SA~~g~~v~~l~~~i~~~ 342 (429)
T TIGR03594 314 PFLDFAPIVFISALTGQGVDKLLDAIDEV 342 (429)
T ss_pred ccCCCCceEEEeCCCCCCHHHHHHHHHHH
Confidence 01133689999999999999999998764
No 165
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.89 E-value=5.4e-22 Score=152.39 Aligned_cols=148 Identities=20% Similarity=0.236 Sum_probs=115.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcc--ccC--CCCCcceeEEEeCCeEEEEEEcCChhh---------hHHhHHhhhcc
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLV--QHQ--PTQYPTSEELSIGKIKFKAFDLGGHQM---------ARRVWKDYYAK 87 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~--~~~--~t~~~~~~~~~~~~~~~~~~D~~g~~~---------~~~~~~~~~~~ 87 (193)
..|+++|.||+|||||+|+|.+.+.. ... .|+++......+.+..+.++||+|.+. ........++.
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~e 83 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEE 83 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHh
Confidence 67999999999999999999998866 222 388888899999999999999999552 12333456789
Q ss_pred CCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCcc
Q 029453 88 VDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRP 167 (193)
Q Consensus 88 ~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (193)
+|+++||+|...+ +...+..+..+++. .++|+++|+||+|... ..+...+.+++-+
T Consensus 84 ADvilfvVD~~~G--it~~D~~ia~~Lr~---~~kpviLvvNK~D~~~--~e~~~~efyslG~----------------- 139 (444)
T COG1160 84 ADVILFVVDGREG--ITPADEEIAKILRR---SKKPVILVVNKIDNLK--AEELAYEFYSLGF----------------- 139 (444)
T ss_pred CCEEEEEEeCCCC--CCHHHHHHHHHHHh---cCCCEEEEEEcccCch--hhhhHHHHHhcCC-----------------
Confidence 9999999999775 45666666666653 5799999999999752 2223344444443
Q ss_pred EEEEEEeeecCCChhHHHHhhhhhc
Q 029453 168 LEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 168 ~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
-+++++||.+|.|+.++++++.+.+
T Consensus 140 g~~~~ISA~Hg~Gi~dLld~v~~~l 164 (444)
T COG1160 140 GEPVPISAEHGRGIGDLLDAVLELL 164 (444)
T ss_pred CCceEeehhhccCHHHHHHHHHhhc
Confidence 3679999999999999999998764
No 166
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.89 E-value=2.2e-21 Score=135.56 Aligned_cols=155 Identities=18% Similarity=0.203 Sum_probs=103.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCcc--ccCC--CCCcceeEEEeCCeEEEEEEcCChhhh----------H-HhHHhh
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDERLV--QHQP--TQYPTSEELSIGKIKFKAFDLGGHQMA----------R-RVWKDY 84 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~----------~-~~~~~~ 84 (193)
.++|+++|.+|+|||||++++.+.... ...+ +.......+..++..+.+|||||+... . ......
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~ 81 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKA 81 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHHH
Confidence 579999999999999999999887643 2222 222333456667788999999996432 1 011234
Q ss_pred hccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC--CCHHHHHHhhCCCccccCCCcccCCC
Q 029453 85 YAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYA--ASEDELRYHMGLTNFTTGKGNVNLDN 162 (193)
Q Consensus 85 ~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (193)
+..+|++++|+|++++.+.... ..+.... . .+.|+++++||+|+... ...+++.+...... .
T Consensus 82 ~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~-~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~-~---------- 145 (174)
T cd01895 82 IERADVVLLVIDATEGITEQDL-RIAGLIL-E---EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKL-P---------- 145 (174)
T ss_pred HhhcCeEEEEEeCCCCcchhHH-HHHHHHH-h---cCCCEEEEEeccccCCccHHHHHHHHHHHHhhc-c----------
Confidence 5689999999999987554332 2222222 2 36899999999999754 23333333332221 0
Q ss_pred CCCccEEEEEEeeecCCChhHHHHhhhhh
Q 029453 163 TNVRPLEVFMCSIVRKMGYGEGFKWLSQY 191 (193)
Q Consensus 163 ~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~ 191 (193)
.....+++++||+++.|++++++++.+.
T Consensus 146 -~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 146 -FLDYAPIVFISALTGQGVDKLFDAIDEV 173 (174)
T ss_pred -cccCCceEEEeccCCCCHHHHHHHHHHh
Confidence 0023579999999999999999998763
No 167
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.89 E-value=4e-22 Score=143.09 Aligned_cols=159 Identities=19% Similarity=0.101 Sum_probs=99.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcc--ccCC----CCCcceeEEEe---------------------------------
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLV--QHQP----TQYPTSEELSI--------------------------------- 61 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~--~~~~----t~~~~~~~~~~--------------------------------- 61 (193)
++|+++|+.|+|||||+..+.+.... .... +.......+.+
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 47999999999999999999654211 1000 11000000000
Q ss_pred CCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHH
Q 029453 62 GKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDE 141 (193)
Q Consensus 62 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~ 141 (193)
....+.+|||||++.+...+...+..+|++++|+|++++.........+..+. .. ...|+++|+||+|+.......+
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~-~~--~~~~iiivvNK~Dl~~~~~~~~ 157 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALE-IM--GLKHIIIVQNKIDLVKEEQALE 157 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHH-Hc--CCCcEEEEEEchhccCHHHHHH
Confidence 12678999999999988887788889999999999987421112222222221 11 2357999999999964322222
Q ss_pred HHHhhCCCccccCCCcccCCCCCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 142 LRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
..+.+.... .. .....++++++||++|.|+++++++|.+.+
T Consensus 158 ~~~~i~~~~-~~---------~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l 198 (203)
T cd01888 158 NYEQIKKFV-KG---------TIAENAPIIPISAQLKYNIDVLLEYIVKKI 198 (203)
T ss_pred HHHHHHHHH-hc---------cccCCCcEEEEeCCCCCCHHHHHHHHHHhC
Confidence 112211110 00 001235799999999999999999998765
No 168
>PRK11058 GTPase HflX; Provisional
Probab=99.89 E-value=1.8e-21 Score=152.84 Aligned_cols=151 Identities=17% Similarity=0.196 Sum_probs=103.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-c--CCCCCcceeEEEeCCe-EEEEEEcCChhh---------hHHhHHhhhcc
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLVQ-H--QPTQYPTSEELSIGKI-KFKAFDLGGHQM---------ARRVWKDYYAK 87 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~~-~--~~t~~~~~~~~~~~~~-~~~~~D~~g~~~---------~~~~~~~~~~~ 87 (193)
++|+++|.+|||||||+|++.+..... . ..|.++....+.+.+. .+.+|||+|..+ +... ...+..
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~lve~f~~t-l~~~~~ 276 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKAT-LQETRQ 276 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCCCeEEEEecCcccccCCHHHHHHHHHH-HHHhhc
Confidence 689999999999999999999876431 2 2366666667776654 889999999732 2222 233578
Q ss_pred CCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCcc
Q 029453 88 VDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRP 167 (193)
Q Consensus 88 ~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (193)
+|++++|+|++++.+......+.. ++......++|+++|+||+|+...... ..... . . ..
T Consensus 277 ADlIL~VvDaS~~~~~e~l~~v~~-iL~el~~~~~pvIiV~NKiDL~~~~~~-~~~~~-~--~---------------~~ 336 (426)
T PRK11058 277 ATLLLHVVDAADVRVQENIEAVNT-VLEEIDAHEIPTLLVMNKIDMLDDFEP-RIDRD-E--E---------------NK 336 (426)
T ss_pred CCEEEEEEeCCCccHHHHHHHHHH-HHHHhccCCCCEEEEEEcccCCCchhH-HHHHH-h--c---------------CC
Confidence 999999999999866555433222 222222347899999999999642111 11100 0 0 00
Q ss_pred EEEEEEeeecCCChhHHHHhhhhhc
Q 029453 168 LEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 168 ~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
..++.+||++|.|+++++++|.+.+
T Consensus 337 ~~~v~ISAktG~GIdeL~e~I~~~l 361 (426)
T PRK11058 337 PIRVWLSAQTGAGIPLLFQALTERL 361 (426)
T ss_pred CceEEEeCCCCCCHHHHHHHHHHHh
Confidence 1257899999999999999998764
No 169
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.89 E-value=1.1e-21 Score=155.66 Aligned_cols=147 Identities=20% Similarity=0.263 Sum_probs=106.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccc--cCC--CCCcceeEEEeCCeEEEEEEcCCh--------hhhHHhHHhhhccCC
Q 029453 22 KILFLGLDNSGKTTLLHMLKDERLVQ--HQP--TQYPTSEELSIGKIKFKAFDLGGH--------QMARRVWKDYYAKVD 89 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~~~~~--~~~--t~~~~~~~~~~~~~~~~~~D~~g~--------~~~~~~~~~~~~~~d 89 (193)
+|+++|.+|||||||+|++.+..... ..+ |.........+++..+.+|||||. +.+......+++.+|
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad 80 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEAD 80 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCC
Confidence 58999999999999999999877432 222 555666777888899999999995 344455566788999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEE
Q 029453 90 AVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLE 169 (193)
Q Consensus 90 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (193)
++++|+|+.++. ......+..+++. .++|+++|+||+|+...... ..+.... ...+
T Consensus 81 ~vl~vvD~~~~~--~~~d~~i~~~l~~---~~~piilVvNK~D~~~~~~~--~~~~~~l-----------------g~~~ 136 (429)
T TIGR03594 81 VILFVVDGREGL--TPEDEEIAKWLRK---SGKPVILVANKIDGKKEDAV--AAEFYSL-----------------GFGE 136 (429)
T ss_pred EEEEEEeCCCCC--CHHHHHHHHHHHH---hCCCEEEEEECccCCccccc--HHHHHhc-----------------CCCC
Confidence 999999998753 2333334444433 47899999999998643221 1111111 1135
Q ss_pred EEEEeeecCCChhHHHHhhhhhc
Q 029453 170 VFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 170 ~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
++++||++|.|++++++++.+.+
T Consensus 137 ~~~vSa~~g~gv~~ll~~i~~~l 159 (429)
T TIGR03594 137 PIPISAEHGRGIGDLLDAILELL 159 (429)
T ss_pred eEEEeCCcCCChHHHHHHHHHhc
Confidence 79999999999999999998764
No 170
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.88 E-value=9.5e-22 Score=152.80 Aligned_cols=157 Identities=19% Similarity=0.197 Sum_probs=108.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCcc-ccC--CCCCcceeEEEeCC-eEEEEEEcCChhh-------hHHhHHhhhccCCE
Q 029453 22 KILFLGLDNSGKTTLLHMLKDERLV-QHQ--PTQYPTSEELSIGK-IKFKAFDLGGHQM-------ARRVWKDYYAKVDA 90 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~~~~-~~~--~t~~~~~~~~~~~~-~~~~~~D~~g~~~-------~~~~~~~~~~~~d~ 90 (193)
.|+|+|.||||||||+|++.+.+.. ..+ .|..+....+.+.. ..+.++||||..+ ....+...++.+++
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radv 240 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLERCRV 240 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHHHhCCE
Confidence 7999999999999999999976643 222 36677777787765 5699999999643 12223345788999
Q ss_pred EEEEEeCC---ChhhHHHHHHHHHHHHhC-CCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCc
Q 029453 91 VVYLIDAY---DKERFSESKRELDALLSD-EALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVR 166 (193)
Q Consensus 91 ii~v~d~~---~~~~~~~~~~~~~~~~~~-~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (193)
+++|+|++ +.+.+.....++..+... ....+.|+++|+||+|+.......+....+.... ..
T Consensus 241 lL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~~~~--------------~~ 306 (390)
T PRK12298 241 LLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKAIVEAL--------------GW 306 (390)
T ss_pred EEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHHHHHHHHHHHHh--------------CC
Confidence 99999998 344455555565555432 1224689999999999864322222222221111 01
Q ss_pred cEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 167 PLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 167 ~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
..+++++||+++.|+++++++|.+.+
T Consensus 307 ~~~Vi~ISA~tg~GIdeLl~~I~~~L 332 (390)
T PRK12298 307 EGPVYLISAASGLGVKELCWDLMTFI 332 (390)
T ss_pred CCCEEEEECCCCcCHHHHHHHHHHHh
Confidence 12589999999999999999998765
No 171
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.88 E-value=1.3e-21 Score=139.74 Aligned_cols=159 Identities=20% Similarity=0.241 Sum_probs=102.4
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHHhcCCcc-ccCCCCCccee--EEEeCCeEEEEEEcCCh----------hhhHHhHH
Q 029453 16 LWQKEAKILFLGLDNSGKTTLLHMLKDERLV-QHQPTQYPTSE--ELSIGKIKFKAFDLGGH----------QMARRVWK 82 (193)
Q Consensus 16 ~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~~--~~~~~~~~~~~~D~~g~----------~~~~~~~~ 82 (193)
.....++|+++|.+|||||||++++.+.++. ...++.+.+.. .... +..+.+|||||+ +.+.....
T Consensus 20 ~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~ 98 (196)
T PRK00454 20 PPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV-NDKLRLVDLPGYGYAKVSKEEKEKWQKLIE 98 (196)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec-CCeEEEeCCCCCCCcCCCchHHHHHHHHHH
Confidence 3447789999999999999999999987633 33333332221 1122 467999999994 33444444
Q ss_pred hhhcc---CCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCccc
Q 029453 83 DYYAK---VDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVN 159 (193)
Q Consensus 83 ~~~~~---~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (193)
.++.. .+++++|+|.+++.+. ....+..++.. .+.|+++++||+|+......+.....+.... ..
T Consensus 99 ~~~~~~~~~~~~~~v~d~~~~~~~--~~~~i~~~l~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l-~~------ 166 (196)
T PRK00454 99 EYLRTRENLKGVVLLIDSRHPLKE--LDLQMIEWLKE---YGIPVLIVLTKADKLKKGERKKQLKKVRKAL-KF------ 166 (196)
T ss_pred HHHHhCccceEEEEEEecCCCCCH--HHHHHHHHHHH---cCCcEEEEEECcccCCHHHHHHHHHHHHHHH-Hh------
Confidence 44543 4678889998775322 22222233322 4789999999999975433333222221111 00
Q ss_pred CCCCCCccEEEEEEeeecCCChhHHHHhhhhhcC
Q 029453 160 LDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYIK 193 (193)
Q Consensus 160 ~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l~ 193 (193)
...+++++||+++.|+++++++|.+.++
T Consensus 167 ------~~~~~~~~Sa~~~~gi~~l~~~i~~~~~ 194 (196)
T PRK00454 167 ------GDDEVILFSSLKKQGIDELRAAIAKWLA 194 (196)
T ss_pred ------cCCceEEEEcCCCCCHHHHHHHHHHHhc
Confidence 1247889999999999999999988764
No 172
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.88 E-value=1.4e-21 Score=155.31 Aligned_cols=146 Identities=21% Similarity=0.270 Sum_probs=103.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcc--ccCC--CCCcceeEEEeCCeEEEEEEcCChhh--------hHHhHHhhhccC
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLV--QHQP--TQYPTSEELSIGKIKFKAFDLGGHQM--------ARRVWKDYYAKV 88 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~--------~~~~~~~~~~~~ 88 (193)
++|+++|.+|||||||+|++.+.... ...+ |.........+++..+.+|||||+.. .......++..+
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~a 81 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDDGFEKQIREQAELAIEEA 81 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHhC
Confidence 58999999999999999999987743 2222 44556667778889999999999876 233344567889
Q ss_pred CEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccE
Q 029453 89 DAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPL 168 (193)
Q Consensus 89 d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (193)
|++++|+|+.++.+ .....+..+++. .+.|+++|+||+|+... .....+...... .
T Consensus 82 d~il~vvd~~~~~~--~~~~~~~~~l~~---~~~piilv~NK~D~~~~--~~~~~~~~~lg~-----------------~ 137 (435)
T PRK00093 82 DVILFVVDGRAGLT--PADEEIAKILRK---SNKPVILVVNKVDGPDE--EADAYEFYSLGL-----------------G 137 (435)
T ss_pred CEEEEEEECCCCCC--HHHHHHHHHHHH---cCCcEEEEEECccCccc--hhhHHHHHhcCC-----------------C
Confidence 99999999987532 222233333333 37899999999997531 112222221111 2
Q ss_pred EEEEEeeecCCChhHHHHhhhh
Q 029453 169 EVFMCSIVRKMGYGEGFKWLSQ 190 (193)
Q Consensus 169 ~~~~~Sa~~~~gi~~~~~~i~~ 190 (193)
+++++||++|.|+++++++|.+
T Consensus 138 ~~~~iSa~~g~gv~~l~~~I~~ 159 (435)
T PRK00093 138 EPYPISAEHGRGIGDLLDAILE 159 (435)
T ss_pred CCEEEEeeCCCCHHHHHHHHHh
Confidence 4689999999999999999875
No 173
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.88 E-value=2e-21 Score=157.66 Aligned_cols=161 Identities=19% Similarity=0.188 Sum_probs=110.9
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHHhcCCccccC-C--CCCcceeEEEeCCe-EEEEEEcCChhhhHHhHHhhhccCCEE
Q 029453 16 LWQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQ-P--TQYPTSEELSIGKI-KFKAFDLGGHQMARRVWKDYYAKVDAV 91 (193)
Q Consensus 16 ~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~-~--t~~~~~~~~~~~~~-~~~~~D~~g~~~~~~~~~~~~~~~d~i 91 (193)
+..+.++|+++|++++|||||++++.+..+...+ + |.......+.+.+. .+.+||||||+.|..++......+|++
T Consensus 83 ~~~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~~~r~rga~~aDia 162 (587)
T TIGR00487 83 LVERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDGKMITFLDTPGHEAFTSMRARGAKVTDIV 162 (587)
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCCcEEEEEECCCCcchhhHHHhhhccCCEE
Confidence 3457799999999999999999999887765432 2 33333344555444 899999999999999888888999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEE
Q 029453 92 VYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVF 171 (193)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (193)
++|+|++++..-+... .+... . ..++|+++++||+|+... ..+++...+....+. ...+....+++
T Consensus 163 ILVVda~dgv~~qT~e-~i~~~-~---~~~vPiIVviNKiDl~~~-~~e~v~~~L~~~g~~--------~~~~~~~~~~v 228 (587)
T TIGR00487 163 VLVVAADDGVMPQTIE-AISHA-K---AANVPIIVAINKIDKPEA-NPDRVKQELSEYGLV--------PEDWGGDTIFV 228 (587)
T ss_pred EEEEECCCCCCHhHHH-HHHHH-H---HcCCCEEEEEECcccccC-CHHHHHHHHHHhhhh--------HHhcCCCceEE
Confidence 9999998743212221 12221 1 147899999999999642 334443333211100 00111235799
Q ss_pred EEeeecCCChhHHHHhhhh
Q 029453 172 MCSIVRKMGYGEGFKWLSQ 190 (193)
Q Consensus 172 ~~Sa~~~~gi~~~~~~i~~ 190 (193)
++||++|.|+++++++|..
T Consensus 229 ~iSAktGeGI~eLl~~I~~ 247 (587)
T TIGR00487 229 PVSALTGDGIDELLDMILL 247 (587)
T ss_pred EEECCCCCChHHHHHhhhh
Confidence 9999999999999999853
No 174
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=4.9e-23 Score=136.25 Aligned_cols=153 Identities=20% Similarity=0.275 Sum_probs=116.7
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCccccC-CCCCcc--eeEEEe-----------CCeEEEEEEcCChhhhHHhHHhh
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERLVQHQ-PTQYPT--SEELSI-----------GKIKFKAFDLGGHQMARRVWKDY 84 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~-~t~~~~--~~~~~~-----------~~~~~~~~D~~g~~~~~~~~~~~ 84 (193)
.-+|...+|.+|+||||++.++..+++...- .|.+.. .+.+-+ ....+.+|||.|+++|++...++
T Consensus 8 ylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAF 87 (219)
T KOG0081|consen 8 YLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAF 87 (219)
T ss_pred HHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHH
Confidence 4457788999999999999999887765322 233222 111111 12578899999999999999999
Q ss_pred hccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHH---HHHHhhCCCccccCCCccc
Q 029453 85 YAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY--AASED---ELRYHMGLTNFTTGKGNVN 159 (193)
Q Consensus 85 ~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~--~~~~~---~~~~~~~~~~~~~~~~~~~ 159 (193)
+..+=++++++|.++.++|.+...|+..+....--.+..+++++||+||.. ....+ ++.+.++++
T Consensus 88 fRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglP---------- 157 (219)
T KOG0081|consen 88 FRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLP---------- 157 (219)
T ss_pred HHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCC----------
Confidence 999999999999999999999999999885433224677999999999972 23332 255555555
Q ss_pred CCCCCCccEEEEEEeeecCCChhHHHHhhhhh
Q 029453 160 LDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQY 191 (193)
Q Consensus 160 ~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~ 191 (193)
++++||-+|.|+++..+.|...
T Consensus 158 ----------YfETSA~tg~Nv~kave~Lldl 179 (219)
T KOG0081|consen 158 ----------YFETSACTGTNVEKAVELLLDL 179 (219)
T ss_pred ----------eeeeccccCcCHHHHHHHHHHH
Confidence 4899999999999999987654
No 175
>PLN00023 GTP-binding protein; Provisional
Probab=99.88 E-value=1.7e-21 Score=145.85 Aligned_cols=119 Identities=18% Similarity=0.365 Sum_probs=98.0
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce--eEEEeC---------------CeEEEEEEcCChhhhH
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPTS--EELSIG---------------KIKFKAFDLGGHQMAR 78 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~---------------~~~~~~~D~~g~~~~~ 78 (193)
....+||+++|..|||||||++++.++.+.. ..+|.+... ..+.++ ...+.+|||+|++.+.
T Consensus 18 ~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfr 97 (334)
T PLN00023 18 PCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYK 97 (334)
T ss_pred CccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhh
Confidence 4477899999999999999999999988764 455665432 333332 3569999999999999
Q ss_pred HhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCC-----------CCCCcEEEEeeCCCCCC
Q 029453 79 RVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEA-----------LADVPFLILGNKIDIPY 135 (193)
Q Consensus 79 ~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~-----------~~~~pviiv~nK~Dl~~ 135 (193)
.++..++++++++|+|+|+++.+++..+..|+..+..... ..++|+++|+||+||..
T Consensus 98 sL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~ 165 (334)
T PLN00023 98 DCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAP 165 (334)
T ss_pred hhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccc
Confidence 9999999999999999999999999999999998865421 13589999999999964
No 176
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=3.6e-21 Score=125.18 Aligned_cols=155 Identities=19% Similarity=0.251 Sum_probs=120.9
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccccCC-CCCc----ceeEEEeCCeEEEEEEcCChhhhHHhHHhhhccCCEE
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQP-TQYP----TSEELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAV 91 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~-t~~~----~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~i 91 (193)
+..-+|..++|.-|+|||+|++++...++....| |.+. ....++..+..+.+|||.|+++|+.....+++.+.+.
T Consensus 8 ysyifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaaga 87 (215)
T KOG0097|consen 8 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGA 87 (215)
T ss_pred hhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccce
Confidence 4456799999999999999999999888876555 4332 2334445568899999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC--CCCCHHHHHHhhCCCccccCCCcccCCCCCCccEE
Q 029453 92 VYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIP--YAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLE 169 (193)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (193)
++|+|++.++++..+..|+....+. ..++..+++++||.|+. ++.+-++....-.. ....
T Consensus 88 lmvyditrrstynhlsswl~dar~l-tnpnt~i~lignkadle~qrdv~yeeak~faee-----------------ngl~ 149 (215)
T KOG0097|consen 88 LMVYDITRRSTYNHLSSWLTDARNL-TNPNTVIFLIGNKADLESQRDVTYEEAKEFAEE-----------------NGLM 149 (215)
T ss_pred eEEEEehhhhhhhhHHHHHhhhhcc-CCCceEEEEecchhhhhhcccCcHHHHHHHHhh-----------------cCeE
Confidence 9999999999999999999887543 33677788999999996 44444443322221 2257
Q ss_pred EEEEeeecCCChhHHHHhhh
Q 029453 170 VFMCSIVRKMGYGEGFKWLS 189 (193)
Q Consensus 170 ~~~~Sa~~~~gi~~~~~~i~ 189 (193)
++++||++|.|+++.|-.-.
T Consensus 150 fle~saktg~nvedafle~a 169 (215)
T KOG0097|consen 150 FLEASAKTGQNVEDAFLETA 169 (215)
T ss_pred EEEecccccCcHHHHHHHHH
Confidence 89999999999999886543
No 177
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.88 E-value=1.1e-21 Score=138.24 Aligned_cols=145 Identities=21% Similarity=0.284 Sum_probs=93.2
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCc-cccCCCCCcce--eEEEeCCeEEEEEEcCChh----------hhHHhHHh
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERL-VQHQPTQYPTS--EELSIGKIKFKAFDLGGHQ----------MARRVWKD 83 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~-~~~~~t~~~~~--~~~~~~~~~~~~~D~~g~~----------~~~~~~~~ 83 (193)
..+.++|+++|.+|+|||||+|++.+..+ ..+.++.+.+. ..+..+ ..+.+|||||.. .+......
T Consensus 15 ~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 93 (179)
T TIGR03598 15 PDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVN-DGFRLVDLPGYGYAKVSKEEKEKWQKLIEE 93 (179)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeC-CcEEEEeCCCCccccCChhHHHHHHHHHHH
Confidence 46889999999999999999999998763 23333333222 122223 368999999942 23333334
Q ss_pred hhc---cCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCH----HHHHHhhCCCccccCCC
Q 029453 84 YYA---KVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASE----DELRYHMGLTNFTTGKG 156 (193)
Q Consensus 84 ~~~---~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~----~~~~~~~~~~~~~~~~~ 156 (193)
++. .++++++|+|++++-+... ..+...+.. .++|+++++||+|+...... +++++.+....
T Consensus 94 ~l~~~~~~~~ii~vvd~~~~~~~~~--~~~~~~~~~---~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~------ 162 (179)
T TIGR03598 94 YLEKRENLKGVVLLMDIRHPLKELD--LEMLEWLRE---RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDA------ 162 (179)
T ss_pred HHHhChhhcEEEEEecCCCCCCHHH--HHHHHHHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhcc------
Confidence 444 4689999999987533222 222233332 47899999999999643222 22333333221
Q ss_pred cccCCCCCCccEEEEEEeeecCCChh
Q 029453 157 NVNLDNTNVRPLEVFMCSIVRKMGYG 182 (193)
Q Consensus 157 ~~~~~~~~~~~~~~~~~Sa~~~~gi~ 182 (193)
..++++++||++|+|++
T Consensus 163 ---------~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 163 ---------DDPSVQLFSSLKKTGID 179 (179)
T ss_pred ---------CCCceEEEECCCCCCCC
Confidence 23589999999999984
No 178
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.88 E-value=2.6e-21 Score=160.56 Aligned_cols=160 Identities=19% Similarity=0.174 Sum_probs=112.3
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccccC-C--CCCcceeEEEeCCeEEEEEEcCChhhhHHhHHhhhccCCEEEE
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQ-P--TQYPTSEELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVY 93 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~-~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 93 (193)
..+.+.|+++|++++|||||+++|.+..+.... . |.......+.+++..+.+||||||+.|..++......+|++++
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F~~m~~rga~~aDiaIL 366 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNGGKITFLDTPGHEAFTAMRARGAQVTDIVVL 366 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECCEEEEEEECCCCccchhHHHhhhhhCCEEEE
Confidence 568899999999999999999999876654321 1 3333345566778899999999999999988888899999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEE
Q 029453 94 LIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMC 173 (193)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (193)
|+|++++..-+... .+... . ..++|+++++||+|+... ..+.+...+....+ ....+...++++++
T Consensus 367 VVdAddGv~~qT~e-~i~~a-~---~~~vPiIVviNKiDl~~a-~~e~V~~eL~~~~~--------~~e~~g~~vp~vpv 432 (787)
T PRK05306 367 VVAADDGVMPQTIE-AINHA-K---AAGVPIIVAINKIDKPGA-NPDRVKQELSEYGL--------VPEEWGGDTIFVPV 432 (787)
T ss_pred EEECCCCCCHhHHH-HHHHH-H---hcCCcEEEEEECcccccc-CHHHHHHHHHHhcc--------cHHHhCCCceEEEE
Confidence 99998742111111 12222 1 247999999999999642 33333332221100 00111234689999
Q ss_pred eeecCCChhHHHHhhhh
Q 029453 174 SIVRKMGYGEGFKWLSQ 190 (193)
Q Consensus 174 Sa~~~~gi~~~~~~i~~ 190 (193)
||++|.|+++++++|..
T Consensus 433 SAktG~GI~eLle~I~~ 449 (787)
T PRK05306 433 SAKTGEGIDELLEAILL 449 (787)
T ss_pred eCCCCCCchHHHHhhhh
Confidence 99999999999999863
No 179
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.88 E-value=5.3e-21 Score=155.85 Aligned_cols=149 Identities=21% Similarity=0.204 Sum_probs=105.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCc-------cccC-------CCCCcc----eeEEEe---C--CeEEEEEEcCChhhhH
Q 029453 22 KILFLGLDNSGKTTLLHMLKDERL-------VQHQ-------PTQYPT----SEELSI---G--KIKFKAFDLGGHQMAR 78 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~~~-------~~~~-------~t~~~~----~~~~~~---~--~~~~~~~D~~g~~~~~ 78 (193)
+++++|++++|||||++++....- .... .+.+.+ ...+.+ + ...+.+|||||+.++.
T Consensus 5 Ni~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF~ 84 (595)
T TIGR01393 5 NFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFS 84 (595)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHHH
Confidence 799999999999999999976421 1110 112222 222333 2 2689999999999999
Q ss_pred HhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCH---HHHHHhhCCCccccCC
Q 029453 79 RVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASE---DELRYHMGLTNFTTGK 155 (193)
Q Consensus 79 ~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~---~~~~~~~~~~~~~~~~ 155 (193)
..+..++..+|++++|+|++++.+.+....++... . .++|+++|+||+|+...... +++.+.++..
T Consensus 85 ~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~-~----~~ipiIiViNKiDl~~~~~~~~~~el~~~lg~~------ 153 (595)
T TIGR01393 85 YEVSRSLAACEGALLLVDAAQGIEAQTLANVYLAL-E----NDLEIIPVINKIDLPSADPERVKKEIEEVIGLD------ 153 (595)
T ss_pred HHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHH-H----cCCCEEEEEECcCCCccCHHHHHHHHHHHhCCC------
Confidence 88889999999999999999875555555444333 2 36899999999998643221 2233333221
Q ss_pred CcccCCCCCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 156 GNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
..+++++||++|.|+++++++|.+.+
T Consensus 154 -----------~~~vi~vSAktG~GI~~Lle~I~~~l 179 (595)
T TIGR01393 154 -----------ASEAILASAKTGIGIEEILEAIVKRV 179 (595)
T ss_pred -----------cceEEEeeccCCCCHHHHHHHHHHhC
Confidence 13589999999999999999998754
No 180
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.87 E-value=4.9e-21 Score=139.08 Aligned_cols=171 Identities=26% Similarity=0.283 Sum_probs=116.1
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCcccc-CCCCCcceeEE-E-eC--CeEEEEEEcCChhhhHHhHHhhhccCCEEEE
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERLVQH-QPTQYPTSEEL-S-IG--KIKFKAFDLGGHQMARRVWKDYYAKVDAVVY 93 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~~~~-~~t~~~~~~~~-~-~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 93 (193)
..+||+++|++|||||||++++.++.+... .+|.+...... . .. ...+.+|||+|+++++..+..+...++++++
T Consensus 4 ~~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~ 83 (219)
T COG1100 4 KEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILI 83 (219)
T ss_pred ceEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEE
Confidence 448999999999999999999999998853 34444322221 1 11 5679999999999999999999999999999
Q ss_pred EEeCCChhhHHHHH-HHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHH-HHHhhC-CCccccCCCcccCCCCCCccEEE
Q 029453 94 LIDAYDKERFSESK-RELDALLSDEALADVPFLILGNKIDIPYAASEDE-LRYHMG-LTNFTTGKGNVNLDNTNVRPLEV 170 (193)
Q Consensus 94 v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 170 (193)
|+|..+..+..+.. .|...+. .....+.|+++|+||+|+........ +...+. ...+........ .. ......+
T Consensus 84 ~~d~~~~~~~~~~~~~~~~~l~-~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~ 160 (219)
T COG1100 84 VYDSTLRESSDELTEEWLEELR-ELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAV-LP-EVANPAL 160 (219)
T ss_pred EEecccchhhhHHHHHHHHHHH-HhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHh-hh-hhcccce
Confidence 99999855555544 5554543 33334699999999999985433222 222221 111111110000 00 0012238
Q ss_pred EEEeee--cCCChhHHHHhhhhhc
Q 029453 171 FMCSIV--RKMGYGEGFKWLSQYI 192 (193)
Q Consensus 171 ~~~Sa~--~~~gi~~~~~~i~~~l 192 (193)
+.+|++ ++.++.+++..+...+
T Consensus 161 ~~~s~~~~~~~~v~~~~~~~~~~~ 184 (219)
T COG1100 161 LETSAKSLTGPNVNELFKELLRKL 184 (219)
T ss_pred eEeecccCCCcCHHHHHHHHHHHH
Confidence 999999 9999999999876543
No 181
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.87 E-value=1.3e-22 Score=141.23 Aligned_cols=169 Identities=20% Similarity=0.319 Sum_probs=120.5
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCcc-ccCCCCCcce-eEEEe---CCeEEEEEEcCChhhhHHhHHhhhccCCEEE
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLV-QHQPTQYPTS-EELSI---GKIKFKAFDLGGHQMARRVWKDYYAKVDAVV 92 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~-~~~~~---~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 92 (193)
...+|++++|..++|||+|+-.+..+.+. .+.||...+. ..+.. ....+.+|||.|++++.+.++-.+.++|+++
T Consensus 2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl 81 (198)
T KOG0393|consen 2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFL 81 (198)
T ss_pred ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEE
Confidence 35789999999999999999999988887 4566666443 33344 3467999999999999987777788999999
Q ss_pred EEEeCCChhhHHH-HHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEE
Q 029453 93 YLIDAYDKERFSE-SKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVF 171 (193)
Q Consensus 93 ~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (193)
+|+++.+++++.+ ..+|+.++. .++ ++.|+++|++|.||+.+....+-....+.......... .+ ....+...++
T Consensus 82 ~cfsv~~p~S~~nv~~kW~pEi~-~~c-p~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~-~l-A~~iga~~y~ 157 (198)
T KOG0393|consen 82 LCFSVVSPESFENVKSKWIPEIK-HHC-PNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGL-EL-AKEIGAVKYL 157 (198)
T ss_pred EEEEcCChhhHHHHHhhhhHHHH-hhC-CCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHH-HH-HHHhCcceee
Confidence 9999999999998 456666664 333 78999999999999843212111111122221111000 00 1112347899
Q ss_pred EEeeecCCChhHHHHhhhh
Q 029453 172 MCSIVRKMGYGEGFKWLSQ 190 (193)
Q Consensus 172 ~~Sa~~~~gi~~~~~~i~~ 190 (193)
+|||++..|++++|+.-..
T Consensus 158 EcSa~tq~~v~~vF~~a~~ 176 (198)
T KOG0393|consen 158 ECSALTQKGVKEVFDEAIR 176 (198)
T ss_pred eehhhhhCCcHHHHHHHHH
Confidence 9999999999999987543
No 182
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.87 E-value=1.4e-20 Score=128.00 Aligned_cols=158 Identities=20% Similarity=0.241 Sum_probs=122.7
Q ss_pred CCCCcccEEEEEcCCCCCHHHHHHHHhcCCcccc-----C--------CCCCcceeEEEeCC-eEEEEEEcCChhhhHHh
Q 029453 15 GLWQKEAKILFLGLDNSGKTTLLHMLKDERLVQH-----Q--------PTQYPTSEELSIGK-IKFKAFDLGGHQMARRV 80 (193)
Q Consensus 15 ~~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~-----~--------~t~~~~~~~~~~~~-~~~~~~D~~g~~~~~~~ 80 (193)
.+.....||+++|+.++||||++++++....... . .|.......+.+.+ ..+++++||||++|..+
T Consensus 5 ~~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~fm 84 (187)
T COG2229 5 ANKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERFKFM 84 (187)
T ss_pred cccccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHHHHHH
Confidence 3566888999999999999999999987764221 1 12223334444444 78999999999999999
Q ss_pred HHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccC
Q 029453 81 WKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNL 160 (193)
Q Consensus 81 ~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (193)
|.-+.+.+.++|+++|.+.+..+ .....+.-+ ... ..+|++|.+||.|+....+++++.+.+....
T Consensus 85 ~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~-~~~--~~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~---------- 150 (187)
T COG2229 85 WEILSRGAVGAIVLVDSSRPITF-HAEEIIDFL-TSR--NPIPVVVAINKQDLFDALPPEKIREALKLEL---------- 150 (187)
T ss_pred HHHHhCCcceEEEEEecCCCcch-HHHHHHHHH-hhc--cCCCEEEEeeccccCCCCCHHHHHHHHHhcc----------
Confidence 99999999999999999998776 333333333 331 2399999999999999989988888887664
Q ss_pred CCCCCccEEEEEEeeecCCChhHHHHhhhhh
Q 029453 161 DNTNVRPLEVFMCSIVRKMGYGEGFKWLSQY 191 (193)
Q Consensus 161 ~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~ 191 (193)
...+++..+|.++++..+.++.+...
T Consensus 151 -----~~~~vi~~~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 151 -----LSVPVIEIDATEGEGARDQLDVLLLK 176 (187)
T ss_pred -----CCCceeeeecccchhHHHHHHHHHhh
Confidence 23689999999999999999887654
No 183
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.87 E-value=6.7e-21 Score=146.39 Aligned_cols=156 Identities=21% Similarity=0.248 Sum_probs=119.1
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCcccc----CCCCCcceeEEEeCCeEEEEEEcCChhhhHH-----------hHHh
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERLVQH----QPTQYPTSEELSIGKIKFKAFDLGGHQMARR-----------VWKD 83 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~-----------~~~~ 83 (193)
..+||+++|.||+|||||+|++.+.+-.-. ..|.+.....+++++..+.++||.|..+-.. -...
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~ 256 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLK 256 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhHh
Confidence 469999999999999999999999886532 2377777888899999999999999432111 1123
Q ss_pred hhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC--CCHHHHHHhhCCCccccCCCcccCC
Q 029453 84 YYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYA--ASEDELRYHMGLTNFTTGKGNVNLD 161 (193)
Q Consensus 84 ~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (193)
.+..++++++|+|++.+ +.+....+..+... .+.++++|+||+|+... ...++++..+....
T Consensus 257 aI~~a~vvllviDa~~~--~~~qD~~ia~~i~~---~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l----------- 320 (444)
T COG1160 257 AIERADVVLLVIDATEG--ISEQDLRIAGLIEE---AGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKL----------- 320 (444)
T ss_pred HHhhcCEEEEEEECCCC--chHHHHHHHHHHHH---cCCCeEEEEEccccCCchhhHHHHHHHHHHHHh-----------
Confidence 56789999999999988 55666666666554 58999999999999754 45555555554422
Q ss_pred CCCCccEEEEEEeeecCCChhHHHHhhhhh
Q 029453 162 NTNVRPLEVFMCSIVRKMGYGEGFKWLSQY 191 (193)
Q Consensus 162 ~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~ 191 (193)
.+....+++.+||++|.|++++|+.+...
T Consensus 321 -~~l~~a~i~~iSA~~~~~i~~l~~~i~~~ 349 (444)
T COG1160 321 -PFLDFAPIVFISALTGQGLDKLFEAIKEI 349 (444)
T ss_pred -ccccCCeEEEEEecCCCChHHHHHHHHHH
Confidence 12355799999999999999999998653
No 184
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.87 E-value=4.8e-21 Score=131.70 Aligned_cols=151 Identities=25% Similarity=0.249 Sum_probs=102.6
Q ss_pred EEcCCCCCHHHHHHHHhcCCccccCC----CCCcceeEEEeC-CeEEEEEEcCChhhhH-------HhHHhhhccCCEEE
Q 029453 25 FLGLDNSGKTTLLHMLKDERLVQHQP----TQYPTSEELSIG-KIKFKAFDLGGHQMAR-------RVWKDYYAKVDAVV 92 (193)
Q Consensus 25 i~G~~~~GKssl~~~l~~~~~~~~~~----t~~~~~~~~~~~-~~~~~~~D~~g~~~~~-------~~~~~~~~~~d~ii 92 (193)
++|++|||||||++++.+........ +........... ...+.+||+||+.... .....++..+|+++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il 80 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERADLIL 80 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEE
Confidence 58999999999999998775442211 223333334443 6789999999976543 23345678899999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEE
Q 029453 93 YLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFM 172 (193)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (193)
+|+|++++....... +..... ..+.|+++|+||+|+.......+......... ......++++
T Consensus 81 ~v~~~~~~~~~~~~~-~~~~~~----~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~ 143 (163)
T cd00880 81 FVVDADLRADEEEEK-LLELLR----ERGKPVLLVLNKIDLLPEEEEEELLELRLLIL------------LLLLGLPVIA 143 (163)
T ss_pred EEEeCCCCCCHHHHH-HHHHHH----hcCCeEEEEEEccccCChhhHHHHHHHHHhhc------------ccccCCceEE
Confidence 999999876554443 222222 25899999999999986544444322111111 0124578999
Q ss_pred EeeecCCChhHHHHhhhhhc
Q 029453 173 CSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 173 ~Sa~~~~gi~~~~~~i~~~l 192 (193)
+||+++.|+++++++|.+.+
T Consensus 144 ~sa~~~~~v~~l~~~l~~~~ 163 (163)
T cd00880 144 VSALTGEGIDELREALIEAL 163 (163)
T ss_pred EeeeccCCHHHHHHHHHhhC
Confidence 99999999999999998753
No 185
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.87 E-value=3.3e-21 Score=156.16 Aligned_cols=167 Identities=19% Similarity=0.206 Sum_probs=103.1
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCccccCC---CCCcceeEEEe------------------CCeEEEEEEcCChhhh
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERLVQHQP---TQYPTSEELSI------------------GKIKFKAFDLGGHQMA 77 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~---t~~~~~~~~~~------------------~~~~~~~~D~~g~~~~ 77 (193)
+.+-|+++|++++|||||++++.+..+....+ |.......+.. ....+.+||||||+.+
T Consensus 3 r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f 82 (590)
T TIGR00491 3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAF 82 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhH
Confidence 56789999999999999999999876653322 11111111111 1123889999999999
Q ss_pred HHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCH--------------HHHH
Q 029453 78 RRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASE--------------DELR 143 (193)
Q Consensus 78 ~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~--------------~~~~ 143 (193)
..++..++..+|++++|+|+++....+... .+ .++.. .+.|+++++||+|+.+.... ++..
T Consensus 83 ~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e-~i-~~l~~---~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v~ 157 (590)
T TIGR00491 83 TNLRKRGGALADLAILIVDINEGFKPQTQE-AL-NILRM---YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQ 157 (590)
T ss_pred HHHHHHHHhhCCEEEEEEECCcCCCHhHHH-HH-HHHHH---cCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHHH
Confidence 998888899999999999998742212111 11 12222 37899999999999632110 0010
Q ss_pred HhhCCC-------ccccCCCccc--CCCCCCccEEEEEEeeecCCChhHHHHhhhh
Q 029453 144 YHMGLT-------NFTTGKGNVN--LDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQ 190 (193)
Q Consensus 144 ~~~~~~-------~~~~~~~~~~--~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~ 190 (193)
..+... ..+.+...+. ....+....+++++||++|+|+++++++|..
T Consensus 158 ~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~ 213 (590)
T TIGR00491 158 QNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAG 213 (590)
T ss_pred HHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHH
Confidence 000000 0000000000 0012334679999999999999999999854
No 186
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.87 E-value=1.4e-20 Score=155.12 Aligned_cols=161 Identities=19% Similarity=0.216 Sum_probs=110.2
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHHhcCCccccC-C--CCCcceeEEEe----CCeEEEEEEcCChhhhHHhHHhhhccC
Q 029453 16 LWQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQ-P--TQYPTSEELSI----GKIKFKAFDLGGHQMARRVWKDYYAKV 88 (193)
Q Consensus 16 ~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~-~--t~~~~~~~~~~----~~~~~~~~D~~g~~~~~~~~~~~~~~~ 88 (193)
+..+..+|+++|++++|||||++++....+.... + |.......+.+ .+..+.+||||||+.|..++..++..+
T Consensus 240 l~~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~a 319 (742)
T CHL00189 240 SINRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVT 319 (742)
T ss_pred hcccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHC
Confidence 3557889999999999999999999877655321 1 22222222222 358899999999999999998899999
Q ss_pred CEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccE
Q 029453 89 DAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPL 168 (193)
Q Consensus 89 d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (193)
|++++|+|++++...+... .+..+ . ..++|+++++||+|+... ..+++...+..... +...+...+
T Consensus 320 DiaILVVDA~dGv~~QT~E-~I~~~-k---~~~iPiIVViNKiDl~~~-~~e~v~~eL~~~~l--------l~e~~g~~v 385 (742)
T CHL00189 320 DIAILIIAADDGVKPQTIE-AINYI-Q---AANVPIIVAINKIDKANA-NTERIKQQLAKYNL--------IPEKWGGDT 385 (742)
T ss_pred CEEEEEEECcCCCChhhHH-HHHHH-H---hcCceEEEEEECCCcccc-CHHHHHHHHHHhcc--------chHhhCCCc
Confidence 9999999998753222221 12222 1 247899999999999743 23333333321100 000011346
Q ss_pred EEEEEeeecCCChhHHHHhhhh
Q 029453 169 EVFMCSIVRKMGYGEGFKWLSQ 190 (193)
Q Consensus 169 ~~~~~Sa~~~~gi~~~~~~i~~ 190 (193)
+++++||++|.|+++++++|..
T Consensus 386 pvv~VSAktG~GIdeLle~I~~ 407 (742)
T CHL00189 386 PMIPISASQGTNIDKLLETILL 407 (742)
T ss_pred eEEEEECCCCCCHHHHHHhhhh
Confidence 8999999999999999999865
No 187
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.86 E-value=1.3e-20 Score=157.18 Aligned_cols=156 Identities=16% Similarity=0.122 Sum_probs=109.0
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCcc--ccCC--CCCcceeEEEeCCeEEEEEEcCChhh----------hHHh-HHh
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERLV--QHQP--TQYPTSEELSIGKIKFKAFDLGGHQM----------ARRV-WKD 83 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~----------~~~~-~~~ 83 (193)
..++|+++|.+|||||||+|++.+.... ...+ |.......+.+++..+.+|||||..+ +... ...
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~ 528 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQA 528 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHHHHH
Confidence 4589999999999999999999988743 2222 44455556777888899999999531 2111 123
Q ss_pred hhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCC
Q 029453 84 YYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNT 163 (193)
Q Consensus 84 ~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (193)
+++.+|++++|+|++++.+.+... .+..+.. .++|+++|+||+|+.+....+.+...+.... .
T Consensus 529 ~i~~advvilViDat~~~s~~~~~-i~~~~~~----~~~piIiV~NK~DL~~~~~~~~~~~~~~~~l-~----------- 591 (712)
T PRK09518 529 AIERSELALFLFDASQPISEQDLK-VMSMAVD----AGRALVLVFNKWDLMDEFRRQRLERLWKTEF-D----------- 591 (712)
T ss_pred HhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH----cCCCEEEEEEchhcCChhHHHHHHHHHHHhc-c-----------
Confidence 468899999999999876655443 3333332 4789999999999975433333433333221 0
Q ss_pred CCccEEEEEEeeecCCChhHHHHhhhhh
Q 029453 164 NVRPLEVFMCSIVRKMGYGEGFKWLSQY 191 (193)
Q Consensus 164 ~~~~~~~~~~Sa~~~~gi~~~~~~i~~~ 191 (193)
.....+++++||++|.|++++++.+.+.
T Consensus 592 ~~~~~~ii~iSAktg~gv~~L~~~i~~~ 619 (712)
T PRK09518 592 RVTWARRVNLSAKTGWHTNRLAPAMQEA 619 (712)
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 0123577999999999999999998764
No 188
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.86 E-value=9.7e-21 Score=157.92 Aligned_cols=150 Identities=21% Similarity=0.229 Sum_probs=104.1
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCccccC--C--CCCcceeEEEeCCeEEEEEEcCChhh--------hHHhHHhhhc
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERLVQHQ--P--TQYPTSEELSIGKIKFKAFDLGGHQM--------ARRVWKDYYA 86 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~--~--t~~~~~~~~~~~~~~~~~~D~~g~~~--------~~~~~~~~~~ 86 (193)
...+|+++|.+|||||||+|++.+....... + |.........+++..+.+|||||.+. +......+++
T Consensus 274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 353 (712)
T PRK09518 274 AVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAVS 353 (712)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHHH
Confidence 3468999999999999999999987654322 2 22333344556778999999999652 3344455678
Q ss_pred cCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCc
Q 029453 87 KVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVR 166 (193)
Q Consensus 87 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (193)
.+|++++|+|+++. +......+...++. .++|+++|+||+|+.... ....+.+....
T Consensus 354 ~aD~iL~VvDa~~~--~~~~d~~i~~~Lr~---~~~pvIlV~NK~D~~~~~--~~~~~~~~lg~---------------- 410 (712)
T PRK09518 354 LADAVVFVVDGQVG--LTSTDERIVRMLRR---AGKPVVLAVNKIDDQASE--YDAAEFWKLGL---------------- 410 (712)
T ss_pred hCCEEEEEEECCCC--CCHHHHHHHHHHHh---cCCCEEEEEECcccccch--hhHHHHHHcCC----------------
Confidence 99999999999864 23333334444433 589999999999985321 12222221111
Q ss_pred cEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 167 PLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 167 ~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
...+++||++|.|+++++++|.+.+
T Consensus 411 -~~~~~iSA~~g~GI~eLl~~i~~~l 435 (712)
T PRK09518 411 -GEPYPISAMHGRGVGDLLDEALDSL 435 (712)
T ss_pred -CCeEEEECCCCCCchHHHHHHHHhc
Confidence 1347899999999999999998754
No 189
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.86 E-value=6.9e-21 Score=151.41 Aligned_cols=155 Identities=18% Similarity=0.198 Sum_probs=105.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCcccc--CC--CCCcceeEEEeCCeEEEEEEcCChhhh----------HH-hHHh
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERLVQH--QP--TQYPTSEELSIGKIKFKAFDLGGHQMA----------RR-VWKD 83 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~~~~--~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~----------~~-~~~~ 83 (193)
..++|+++|.+|+|||||+|++.+...... .+ |.......+...+..+.+|||||+.+. .. ....
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~ 251 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLK 251 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHHH
Confidence 569999999999999999999997764322 22 222233445567888999999995321 11 1123
Q ss_pred hhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCC
Q 029453 84 YYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNT 163 (193)
Q Consensus 84 ~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (193)
+++.+|++++|+|++++.+.+.. .+...... .++|+++++||+|+......+++...+.... .
T Consensus 252 ~~~~ad~~ilViD~~~~~~~~~~--~i~~~~~~---~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l-~----------- 314 (435)
T PRK00093 252 AIERADVVLLVIDATEGITEQDL--RIAGLALE---AGRALVIVVNKWDLVDEKTMEEFKKELRRRL-P----------- 314 (435)
T ss_pred HHHHCCEEEEEEeCCCCCCHHHH--HHHHHHHH---cCCcEEEEEECccCCCHHHHHHHHHHHHHhc-c-----------
Confidence 57789999999999987544332 22222222 4789999999999974333334433333221 0
Q ss_pred CCccEEEEEEeeecCCChhHHHHhhhh
Q 029453 164 NVRPLEVFMCSIVRKMGYGEGFKWLSQ 190 (193)
Q Consensus 164 ~~~~~~~~~~Sa~~~~gi~~~~~~i~~ 190 (193)
.....+++++||++|.|++++++.+.+
T Consensus 315 ~~~~~~i~~~SA~~~~gv~~l~~~i~~ 341 (435)
T PRK00093 315 FLDYAPIVFISALTGQGVDKLLEAIDE 341 (435)
T ss_pred cccCCCEEEEeCCCCCCHHHHHHHHHH
Confidence 113368999999999999999999865
No 190
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.86 E-value=1.6e-22 Score=130.14 Aligned_cols=147 Identities=24% Similarity=0.324 Sum_probs=114.5
Q ss_pred EEcCCCCCHHHHHHHHhcCCcccc--CCCCCcce--eEEE--eCCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCC
Q 029453 25 FLGLDNSGKTTLLHMLKDERLVQH--QPTQYPTS--EELS--IGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAY 98 (193)
Q Consensus 25 i~G~~~~GKssl~~~l~~~~~~~~--~~t~~~~~--~~~~--~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~ 98 (193)
++|.+++|||+|+-++..+.+... -.|.+... ..+. ..+..+.+|||.||++|++..+.|++.+|++++++|+.
T Consensus 2 llgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydia 81 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIA 81 (192)
T ss_pred ccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecc
Confidence 689999999999988876665432 12333322 2222 23478999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC-----CCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEE
Q 029453 99 DKERFSESKRELDALLSDEALADVPFLILGNKIDIPY-----AASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMC 173 (193)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (193)
+..+|++...|+.++-. +......+++++||+|+.+ ...-+.+.+.+++++ .++
T Consensus 82 nkasfdn~~~wlsei~e-y~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ipf--------------------met 140 (192)
T KOG0083|consen 82 NKASFDNCQAWLSEIHE-YAKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIPF--------------------MET 140 (192)
T ss_pred cchhHHHHHHHHHHHHH-HHHhhHhHhhhccccccchhhccccchHHHHHHHHCCCc--------------------eec
Confidence 99999999999998854 4445688999999999952 222233666666655 789
Q ss_pred eeecCCChhHHHHhhhhhc
Q 029453 174 SIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 174 Sa~~~~gi~~~~~~i~~~l 192 (193)
||++|.|++-.|-.|.+.+
T Consensus 141 saktg~nvd~af~~ia~~l 159 (192)
T KOG0083|consen 141 SAKTGFNVDLAFLAIAEEL 159 (192)
T ss_pred cccccccHhHHHHHHHHHH
Confidence 9999999999999887654
No 191
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.86 E-value=5.3e-21 Score=155.71 Aligned_cols=157 Identities=20% Similarity=0.123 Sum_probs=104.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc----cCC--CCCcceeEEEeCCeEEEEEEcCChhhhHHhHHhhhccCCEEEEE
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLVQ----HQP--TQYPTSEELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYL 94 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~~----~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 94 (193)
+.|+++|++++|||||++++.+..... ..+ |.......+..++..+.+||+|||+.+...+..++.++|++++|
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe~f~~~~~~g~~~aD~aILV 80 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHEKFISNAIAGGGGIDAALLV 80 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHHHHHHHHHhhhccCCEEEEE
Confidence 468999999999999999998643221 111 22333445667778999999999999988888888999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhCCCCCCCc-EEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEE
Q 029453 95 IDAYDKERFSESKRELDALLSDEALADVP-FLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMC 173 (193)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-viiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (193)
+|++++...+. ...+ .++.. .++| +++|+||+|+......+.............. .....+++++
T Consensus 81 VDa~~G~~~qT-~ehl-~il~~---lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~---------~~~~~~ii~v 146 (581)
T TIGR00475 81 VDADEGVMTQT-GEHL-AVLDL---LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYI---------FLKNAKIFKT 146 (581)
T ss_pred EECCCCCcHHH-HHHH-HHHHH---cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhC---------CCCCCcEEEE
Confidence 99988421111 1111 22222 3667 9999999999743322222211111100000 0013689999
Q ss_pred eeecCCChhHHHHhhhhh
Q 029453 174 SIVRKMGYGEGFKWLSQY 191 (193)
Q Consensus 174 Sa~~~~gi~~~~~~i~~~ 191 (193)
||++|.|+++++++|.+.
T Consensus 147 SA~tG~GI~eL~~~L~~l 164 (581)
T TIGR00475 147 SAKTGQGIGELKKELKNL 164 (581)
T ss_pred eCCCCCCchhHHHHHHHH
Confidence 999999999999998664
No 192
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.86 E-value=1.8e-21 Score=128.25 Aligned_cols=109 Identities=25% Similarity=0.342 Sum_probs=78.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccc---cCCCCCccee--EEE--eCCeEEEEEEcCChhhhHHhHHhhhccCCEEEEE
Q 029453 22 KILFLGLDNSGKTTLLHMLKDERLVQ---HQPTQYPTSE--ELS--IGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYL 94 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~--~~~--~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 94 (193)
||+++|++|||||||++++.+..... ..++...... ... .....+.+||++|++.+...+...+..+|++++|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 79999999999999999999888761 1112222211 222 2334689999999998877666668899999999
Q ss_pred EeCCChhhHHHHHH---HHHHHHhCCCCCCCcEEEEeeCCC
Q 029453 95 IDAYDKERFSESKR---ELDALLSDEALADVPFLILGNKID 132 (193)
Q Consensus 95 ~d~~~~~~~~~~~~---~~~~~~~~~~~~~~pviiv~nK~D 132 (193)
+|+++++++..+.. |+..+... ..+.|+++|+||.|
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~~--~~~~piilv~nK~D 119 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRKR--DKNIPIILVGNKSD 119 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHHH--SSCSEEEEEEE-TC
T ss_pred EcCCChHHHHHHHHHHHHHHHHHcc--CCCCCEEEEEeccC
Confidence 99999998888644 45555321 24699999999998
No 193
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.86 E-value=5.3e-20 Score=150.19 Aligned_cols=150 Identities=20% Similarity=0.227 Sum_probs=105.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC--ccc---------c---CC----CCCcceeEEEeC-----CeEEEEEEcCChhhh
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDER--LVQ---------H---QP----TQYPTSEELSIG-----KIKFKAFDLGGHQMA 77 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~--~~~---------~---~~----t~~~~~~~~~~~-----~~~~~~~D~~g~~~~ 77 (193)
-+++++|+.++|||||++++.... ... . +. |.......+.+. +..+.+||||||.++
T Consensus 8 RNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~dF 87 (600)
T PRK05433 8 RNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVDF 87 (600)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHHH
Confidence 389999999999999999997532 110 0 11 222223334332 578999999999999
Q ss_pred HHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCH---HHHHHhhCCCccccC
Q 029453 78 RRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASE---DELRYHMGLTNFTTG 154 (193)
Q Consensus 78 ~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~---~~~~~~~~~~~~~~~ 154 (193)
...+..++..+|++++|+|++++...+....+.... . .++|+++|+||+|+...... +++.+.++..
T Consensus 88 ~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~--~---~~lpiIvViNKiDl~~a~~~~v~~ei~~~lg~~----- 157 (600)
T PRK05433 88 SYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL--E---NDLEIIPVLNKIDLPAADPERVKQEIEDVIGID----- 157 (600)
T ss_pred HHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH--H---CCCCEEEEEECCCCCcccHHHHHHHHHHHhCCC-----
Confidence 988888999999999999999864444443333322 1 47899999999998643221 2233332221
Q ss_pred CCcccCCCCCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 155 KGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
..+++++||++|.|+++++++|.+.+
T Consensus 158 ------------~~~vi~iSAktG~GI~~Ll~~I~~~l 183 (600)
T PRK05433 158 ------------ASDAVLVSAKTGIGIEEVLEAIVERI 183 (600)
T ss_pred ------------cceEEEEecCCCCCHHHHHHHHHHhC
Confidence 13689999999999999999998754
No 194
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.85 E-value=3.7e-20 Score=133.41 Aligned_cols=149 Identities=20% Similarity=0.119 Sum_probs=94.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCcc-c---------------------------------cCCCCCcceeEEEeCCeEEE
Q 029453 22 KILFLGLDNSGKTTLLHMLKDERLV-Q---------------------------------HQPTQYPTSEELSIGKIKFK 67 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~~~~-~---------------------------------~~~t~~~~~~~~~~~~~~~~ 67 (193)
||+++|++|+|||||++++....-. . ...|.......+.+++..+.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 6899999999999999998643211 0 01133344455667788999
Q ss_pred EEEcCChhhhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCH--HHHHHh
Q 029453 68 AFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASE--DELRYH 145 (193)
Q Consensus 68 ~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~--~~~~~~ 145 (193)
+|||||++++.......+..+|++++|+|++++. .........++... ...++++|+||+|+.+.... .+....
T Consensus 81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~--~~~~~~~~~~~~~~--~~~~iIvviNK~D~~~~~~~~~~~i~~~ 156 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGV--LEQTRRHSYILSLL--GIRHVVVAVNKMDLVDYSEEVFEEIVAD 156 (208)
T ss_pred EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCc--cHhHHHHHHHHHHc--CCCcEEEEEEchhcccCCHHHHHHHHHH
Confidence 9999999988766667788999999999998753 22222222222221 12457889999998642211 112222
Q ss_pred hCCCccccCCCcccCCCCCCccEEEEEEeeecCCChhHH
Q 029453 146 MGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEG 184 (193)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~ 184 (193)
+.... .. ......+++++||++|.|+.+.
T Consensus 157 ~~~~~-~~---------~~~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 157 YLAFA-AK---------LGIEDITFIPISALDGDNVVSR 185 (208)
T ss_pred HHHHH-HH---------cCCCCceEEEEeCCCCCCCccC
Confidence 21110 00 0002257899999999999753
No 195
>PTZ00099 rab6; Provisional
Probab=99.85 E-value=5.8e-20 Score=128.86 Aligned_cols=127 Identities=17% Similarity=0.178 Sum_probs=96.8
Q ss_pred cCCCCCccee--EEEeC--CeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCc
Q 029453 48 HQPTQYPTSE--ELSIG--KIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVP 123 (193)
Q Consensus 48 ~~~t~~~~~~--~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 123 (193)
+.+|.+.... .+.++ ...+.+|||||++++...+..+++.+|++|+|+|++++++++....|+..+.... ..+.|
T Consensus 9 ~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~-~~~~p 87 (176)
T PTZ00099 9 YQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER-GKDVI 87 (176)
T ss_pred CCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCe
Confidence 4556665442 23433 4788999999999999999999999999999999999999999999988887543 25789
Q ss_pred EEEEeeCCCCCC--CCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 124 FLILGNKIDIPY--AASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 124 viiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
+++|+||+|+.. ....++....... ..+.++++||++|.|++++|++|.+.+
T Consensus 88 iilVgNK~DL~~~~~v~~~e~~~~~~~-----------------~~~~~~e~SAk~g~nV~~lf~~l~~~l 141 (176)
T PTZ00099 88 IALVGNKTDLGDLRKVTYEEGMQKAQE-----------------YNTMFHETSAKAGHNIKVLFKKIAAKL 141 (176)
T ss_pred EEEEEECcccccccCCCHHHHHHHHHH-----------------cCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 999999999963 2333332221110 124679999999999999999998754
No 196
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=6.9e-20 Score=127.27 Aligned_cols=175 Identities=21% Similarity=0.296 Sum_probs=125.2
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCeEEEEEEcCChhhhHHhHHhhhc---cCCEEEE
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMARRVWKDYYA---KVDAVVY 93 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~---~~d~ii~ 93 (193)
.++.-.|.++|+.+||||+|+-++..+....+.+...++......++...+++|.|||.+.+.....+++ .+-+++|
T Consensus 35 rs~~~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSiepn~a~~r~gs~~~~LVD~PGH~rlR~kl~e~~~~~~~akaiVF 114 (238)
T KOG0090|consen 35 RSKQNAVLLVGLSDSGKTSLFTQLITGSHRGTVTSIEPNEATYRLGSENVTLVDLPGHSRLRRKLLEYLKHNYSAKAIVF 114 (238)
T ss_pred hccCCcEEEEecCCCCceeeeeehhcCCccCeeeeeccceeeEeecCcceEEEeCCCcHHHHHHHHHHccccccceeEEE
Confidence 3344789999999999999999999998777778888999999999888999999999999888888877 7999999
Q ss_pred EEeCCC--hhhHHHHHHHHHHHHhCC-CCCCCcEEEEeeCCCCCCCCCHHHH----HHhhCCCcccc-------------
Q 029453 94 LIDAYD--KERFSESKRELDALLSDE-ALADVPFLILGNKIDIPYAASEDEL----RYHMGLTNFTT------------- 153 (193)
Q Consensus 94 v~d~~~--~~~~~~~~~~~~~~~~~~-~~~~~pviiv~nK~Dl~~~~~~~~~----~~~~~~~~~~~------------- 153 (193)
|+|+.. ++--......+.-+.... ....+|+++++||.|+..+.+.+-+ +.++......+
T Consensus 115 VVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~~~ 194 (238)
T KOG0090|consen 115 VVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDIAK 194 (238)
T ss_pred EEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhccccccccc
Confidence 999974 221223334444444333 4567999999999999855555443 33332111111
Q ss_pred ----CCCccc--CCCCCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 154 ----GKGNVN--LDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 154 ----~~~~~~--~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
...... .+.-....+.+.++|++++ +++++-+||.+++
T Consensus 195 ~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~l 238 (238)
T KOG0090|consen 195 DFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREAL 238 (238)
T ss_pred cccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHhC
Confidence 000111 0111124567899999999 8999999998764
No 197
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.85 E-value=1.2e-19 Score=125.96 Aligned_cols=154 Identities=20% Similarity=0.309 Sum_probs=109.7
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCc-cccCCCCCcce--eEEEeCCeEEEEEEcCC----------hhhhHHhHHhhh
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERL-VQHQPTQYPTS--EELSIGKIKFKAFDLGG----------HQMARRVWKDYY 85 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~-~~~~~t~~~~~--~~~~~~~~~~~~~D~~g----------~~~~~~~~~~~~ 85 (193)
..+-|+++|.+|+|||||+|.+++.+. ..++.|.+.+. ..+.+++ .+.++|.|| .+.+..+...|+
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~-~~~lVDlPGYGyAkv~k~~~e~w~~~i~~YL 101 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDD-ELRLVDLPGYGYAKVPKEVKEKWKKLIEEYL 101 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecC-cEEEEeCCCcccccCCHHHHHHHHHHHHHHH
Confidence 566899999999999999999999773 45555555544 4444444 388999999 334555555666
Q ss_pred c---cCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCH----HHHHHhhCCCccccCCCcc
Q 029453 86 A---KVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASE----DELRYHMGLTNFTTGKGNV 158 (193)
Q Consensus 86 ~---~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~----~~~~~~~~~~~~~~~~~~~ 158 (193)
+ +..++++++|+..+ ....+..+-.++.. .++|+++++||+|+.+.... ....+.+....
T Consensus 102 ~~R~~L~~vvlliD~r~~--~~~~D~em~~~l~~---~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~-------- 168 (200)
T COG0218 102 EKRANLKGVVLLIDARHP--PKDLDREMIEFLLE---LGIPVIVVLTKADKLKKSERNKQLNKVAEELKKPP-------- 168 (200)
T ss_pred hhchhheEEEEEEECCCC--CcHHHHHHHHHHHH---cCCCeEEEEEccccCChhHHHHHHHHHHHHhcCCC--------
Confidence 5 36789999999876 34555555555555 58999999999999854333 23444444443
Q ss_pred cCCCCCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 159 NLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 159 ~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
.....++..|+.++.|++++...|.+.+
T Consensus 169 ------~~~~~~~~~ss~~k~Gi~~l~~~i~~~~ 196 (200)
T COG0218 169 ------PDDQWVVLFSSLKKKGIDELKAKILEWL 196 (200)
T ss_pred ------CccceEEEEecccccCHHHHHHHHHHHh
Confidence 0112289999999999999999988765
No 198
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.85 E-value=3.4e-20 Score=154.56 Aligned_cols=150 Identities=21% Similarity=0.154 Sum_probs=103.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCcc-ccCC--CCCcceeEEEeCCeEEEEEEcCChhhhHH----------hHHhhh
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERLV-QHQP--TQYPTSEELSIGKIKFKAFDLGGHQMARR----------VWKDYY 85 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~~----------~~~~~~ 85 (193)
+.++|+++|++|||||||+|++.+.... ...+ |.+.....+.+++.++.+|||||+..+.. ....++
T Consensus 2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l 81 (772)
T PRK09554 2 KKLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI 81 (772)
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHHH
Confidence 4679999999999999999999876543 2222 44555666778888999999999765421 112222
Q ss_pred --ccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCC
Q 029453 86 --AKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNT 163 (193)
Q Consensus 86 --~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (193)
+.+|++++|+|+++.++.. .+...+.+ .++|+++++||+|+.+........+.+...
T Consensus 82 ~~~~aD~vI~VvDat~ler~l---~l~~ql~e----~giPvIvVlNK~Dl~~~~~i~id~~~L~~~-------------- 140 (772)
T PRK09554 82 LSGDADLLINVVDASNLERNL---YLTLQLLE----LGIPCIVALNMLDIAEKQNIRIDIDALSAR-------------- 140 (772)
T ss_pred hccCCCEEEEEecCCcchhhH---HHHHHHHH----cCCCEEEEEEchhhhhccCcHHHHHHHHHH--------------
Confidence 4799999999999865322 23333332 379999999999986332221111222111
Q ss_pred CCccEEEEEEeeecCCChhHHHHhhhhh
Q 029453 164 NVRPLEVFMCSIVRKMGYGEGFKWLSQY 191 (193)
Q Consensus 164 ~~~~~~~~~~Sa~~~~gi~~~~~~i~~~ 191 (193)
..++++++||++|+|++++++.+.+.
T Consensus 141 --LG~pVvpiSA~~g~GIdeL~~~I~~~ 166 (772)
T PRK09554 141 --LGCPVIPLVSTRGRGIEALKLAIDRH 166 (772)
T ss_pred --hCCCEEEEEeecCCCHHHHHHHHHHh
Confidence 12468999999999999999998654
No 199
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.84 E-value=9.8e-20 Score=133.08 Aligned_cols=149 Identities=23% Similarity=0.252 Sum_probs=102.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCcc-cc--CCCCCcceeEEEeCCeEEEEEEcCChhhhH-------HhHHhhhccCCEE
Q 029453 22 KILFLGLDNSGKTTLLHMLKDERLV-QH--QPTQYPTSEELSIGKIKFKAFDLGGHQMAR-------RVWKDYYAKVDAV 91 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~~~~-~~--~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~-------~~~~~~~~~~d~i 91 (193)
+|+++|++|||||||++++.+.... .. .+|..+....+.+++..+.+||+||+.+.. ......++++|++
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~i 81 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTADLI 81 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECCeEEEEEECCCcccccccchhHHHHHHHhhccCCEE
Confidence 7899999999999999999987632 22 225556677788889999999999974321 2334567899999
Q ss_pred EEEEeCCChhh-HHHHHHHH----------------------------------------HHHHhCC-------------
Q 029453 92 VYLIDAYDKER-FSESKREL----------------------------------------DALLSDE------------- 117 (193)
Q Consensus 92 i~v~d~~~~~~-~~~~~~~~----------------------------------------~~~~~~~------------- 117 (193)
++|+|+++++. .......+ ..+++.+
T Consensus 82 l~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~~~ 161 (233)
T cd01896 82 LMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIREDI 161 (233)
T ss_pred EEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEccCC
Confidence 99999987542 22121111 1111111
Q ss_pred -----------CCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeeecCCChhHHHH
Q 029453 118 -----------ALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFK 186 (193)
Q Consensus 118 -----------~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~ 186 (193)
+...+|+++|+||+|+... ++... +. ...+++++||++|.|++++++
T Consensus 162 ~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~---~~~~~-~~------------------~~~~~~~~SA~~g~gi~~l~~ 219 (233)
T cd01896 162 TVDDLIDVIEGNRVYIPCLYVYNKIDLISI---EELDL-LA------------------RQPNSVVISAEKGLNLDELKE 219 (233)
T ss_pred CHHHHHHHHhCCceEeeEEEEEECccCCCH---HHHHH-Hh------------------cCCCEEEEcCCCCCCHHHHHH
Confidence 1123699999999998532 23221 10 112578999999999999999
Q ss_pred hhhhhc
Q 029453 187 WLSQYI 192 (193)
Q Consensus 187 ~i~~~l 192 (193)
.|.+.+
T Consensus 220 ~i~~~L 225 (233)
T cd01896 220 RIWDKL 225 (233)
T ss_pred HHHHHh
Confidence 998765
No 200
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.84 E-value=1.1e-19 Score=140.13 Aligned_cols=150 Identities=19% Similarity=0.250 Sum_probs=110.1
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHHhcCCcccc----CCCCCcceeEEEeCCeEEEEEEcCChhhh---------HHhHH
Q 029453 16 LWQKEAKILFLGLDNSGKTTLLHMLKDERLVQH----QPTQYPTSEELSIGKIKFKAFDLGGHQMA---------RRVWK 82 (193)
Q Consensus 16 ~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~D~~g~~~~---------~~~~~ 82 (193)
.....++++++|.||+|||||+|.+.+....-+ .+|++.-...+..++.+++++||.|..+- .+. .
T Consensus 213 ilr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs-~ 291 (454)
T COG0486 213 ILREGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERA-K 291 (454)
T ss_pred hhhcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHH-H
Confidence 455889999999999999999999998886532 33777788999999999999999995422 222 2
Q ss_pred hhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCC
Q 029453 83 DYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDN 162 (193)
Q Consensus 83 ~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (193)
..++++|.+++|+|++.+.+ ......+. . ...++|+++|.||.|+......... ...
T Consensus 292 ~~i~~ADlvL~v~D~~~~~~-~~d~~~~~-~----~~~~~~~i~v~NK~DL~~~~~~~~~--~~~--------------- 348 (454)
T COG0486 292 KAIEEADLVLFVLDASQPLD-KEDLALIE-L----LPKKKPIIVVLNKADLVSKIELESE--KLA--------------- 348 (454)
T ss_pred HHHHhCCEEEEEEeCCCCCc-hhhHHHHH-h----cccCCCEEEEEechhcccccccchh--hcc---------------
Confidence 34678999999999998521 11222222 2 1257999999999999854442222 111
Q ss_pred CCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 163 TNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 163 ~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
....++.+|+++|+|++.+.+.|.+.+
T Consensus 349 ---~~~~~i~iSa~t~~Gl~~L~~~i~~~~ 375 (454)
T COG0486 349 ---NGDAIISISAKTGEGLDALREAIKQLF 375 (454)
T ss_pred ---CCCceEEEEecCccCHHHHHHHHHHHH
Confidence 123689999999999999999987653
No 201
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.84 E-value=1.7e-19 Score=128.24 Aligned_cols=149 Identities=17% Similarity=0.129 Sum_probs=94.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCc-------c-----cc-------CCCCCcceeEEEeCCeEEEEEEcCChhhhHHh
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDERL-------V-----QH-------QPTQYPTSEELSIGKIKFKAFDLGGHQMARRV 80 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~~~-------~-----~~-------~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~ 80 (193)
.++|+++|.+++|||||++++.+... . .. ..|.......+..++..+.++||||+..+...
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~ 81 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN 81 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence 57899999999999999999975310 0 00 00222223344456788999999999988877
Q ss_pred HHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCc-EEEEeeCCCCCCCCC-HHHHHHhhCCCccccCCCcc
Q 029453 81 WKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVP-FLILGNKIDIPYAAS-EDELRYHMGLTNFTTGKGNV 158 (193)
Q Consensus 81 ~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-viiv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~ 158 (193)
....+..+|++++|+|+..+- ......+..++.. .++| +++++||+|+..... .++..++.....-....
T Consensus 82 ~~~~~~~~D~~ilVvda~~g~--~~~~~~~~~~~~~---~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~--- 153 (195)
T cd01884 82 MITGAAQMDGAILVVSATDGP--MPQTREHLLLARQ---VGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGF--- 153 (195)
T ss_pred HHHHhhhCCEEEEEEECCCCC--cHHHHHHHHHHHH---cCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcc---
Confidence 777888999999999998752 2323222333333 3566 789999999863221 11122222111100000
Q ss_pred cCCCCCCccEEEEEEeeecCCCh
Q 029453 159 NLDNTNVRPLEVFMCSIVRKMGY 181 (193)
Q Consensus 159 ~~~~~~~~~~~~~~~Sa~~~~gi 181 (193)
.....+++++||++|.|+
T Consensus 154 -----~~~~v~iipiSa~~g~n~ 171 (195)
T cd01884 154 -----DGDNTPIVRGSALKALEG 171 (195)
T ss_pred -----cccCCeEEEeeCccccCC
Confidence 013478999999999985
No 202
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.84 E-value=6.3e-20 Score=145.30 Aligned_cols=154 Identities=17% Similarity=0.118 Sum_probs=100.5
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCcc----------------------------------ccCCCCCcceeEEEeC
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLV----------------------------------QHQPTQYPTSEELSIG 62 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~----------------------------------~~~~t~~~~~~~~~~~ 62 (193)
.++.++|+++|++++|||||+++|....-. ....|.......+..+
T Consensus 3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~ 82 (425)
T PRK12317 3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETD 82 (425)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecC
Confidence 357789999999999999999999732211 0111444455566777
Q ss_pred CeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC--H-
Q 029453 63 KIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAAS--E- 139 (193)
Q Consensus 63 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~--~- 139 (193)
+..+.+||||||+.+.......+..+|++++|+|++++..+.....+...+.... ...|+++++||+|+..... .
T Consensus 83 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~--~~~~iivviNK~Dl~~~~~~~~~ 160 (425)
T PRK12317 83 KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL--GINQLIVAINKMDAVNYDEKRYE 160 (425)
T ss_pred CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc--CCCeEEEEEEccccccccHHHHH
Confidence 8999999999998887655566788999999999987312223222333333222 2246999999999964211 1
Q ss_pred ---HHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeeecCCChhHH
Q 029453 140 ---DELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEG 184 (193)
Q Consensus 140 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~ 184 (193)
+++...+....+ ....++++++||++|.|+++.
T Consensus 161 ~~~~~i~~~l~~~g~------------~~~~~~ii~iSA~~g~gi~~~ 196 (425)
T PRK12317 161 EVKEEVSKLLKMVGY------------KPDDIPFIPVSAFEGDNVVKK 196 (425)
T ss_pred HHHHHHHHHHHhhCC------------CcCcceEEEeecccCCCcccc
Confidence 122222211110 002368999999999999873
No 203
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.84 E-value=1.7e-19 Score=130.90 Aligned_cols=164 Identities=19% Similarity=0.182 Sum_probs=103.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccccCC-------------CCCc----------------------------ceeEEE
Q 029453 22 KILFLGLDNSGKTTLLHMLKDERLVQHQP-------------TQYP----------------------------TSEELS 60 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~-------------t~~~----------------------------~~~~~~ 60 (193)
||+++|+.++|||||++++..+.+..... ..+. ....+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 68999999999999999998654432100 0000 012334
Q ss_pred eCCeEEEEEEcCChhhhHHhHHhhhc--cCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC
Q 029453 61 IGKIKFKAFDLGGHQMARRVWKDYYA--KVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAAS 138 (193)
Q Consensus 61 ~~~~~~~~~D~~g~~~~~~~~~~~~~--~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~ 138 (193)
..+..+.++||||++++.......+. .+|++++|+|+.++. ......+..++.. .++|+++|+||+|+.+...
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~--~~~d~~~l~~l~~---~~ip~ivvvNK~D~~~~~~ 155 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGI--IGMTKEHLGLALA---LNIPVFVVVTKIDLAPANI 155 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCC--cHHHHHHHHHHHH---cCCCEEEEEECccccCHHH
Confidence 45678999999999988766555554 689999999998753 3333333333333 4689999999999864333
Q ss_pred HHH----HHHhhCCCcccc----CCCcccC-----CCCCCccEEEEEEeeecCCChhHHHHhhhh
Q 029453 139 EDE----LRYHMGLTNFTT----GKGNVNL-----DNTNVRPLEVFMCSIVRKMGYGEGFKWLSQ 190 (193)
Q Consensus 139 ~~~----~~~~~~~~~~~~----~~~~~~~-----~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~ 190 (193)
..+ +.+.+...-... ....+++ ........+++.+||.+|+|++++..+|..
T Consensus 156 ~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 156 LQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred HHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 322 333333211110 0000000 111224569999999999999999998864
No 204
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.84 E-value=7.9e-20 Score=143.64 Aligned_cols=161 Identities=19% Similarity=0.105 Sum_probs=101.8
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCccccCC------CCCcc-------------------ee-EEEe------CCeE
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQHQP------TQYPT-------------------SE-ELSI------GKIK 65 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~------t~~~~-------------------~~-~~~~------~~~~ 65 (193)
+++++|+++|.+++|||||++.+.+........ |.... .. .... .+..
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR 81 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence 567899999999999999999997532211100 00000 00 0001 1467
Q ss_pred EEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHh
Q 029453 66 FKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYH 145 (193)
Q Consensus 66 ~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~ 145 (193)
+.+||+|||+++...+......+|++++|+|++++.........+. ++... ...|+++++||+|+.......+..+.
T Consensus 82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~-~l~~~--gi~~iIVvvNK~Dl~~~~~~~~~~~~ 158 (406)
T TIGR03680 82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLM-ALEII--GIKNIVIVQNKIDLVSKEKALENYEE 158 (406)
T ss_pred EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHH-HHHHc--CCCeEEEEEEccccCCHHHHHHHHHH
Confidence 9999999999998888888888999999999987421111122222 22221 23579999999999743222121122
Q ss_pred hCCCccccCCCcccCCCCCCccEEEEEEeeecCCChhHHHHhhhhh
Q 029453 146 MGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQY 191 (193)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~ 191 (193)
+.... . ......++++++||++|.|+++++++|...
T Consensus 159 i~~~l-~---------~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~ 194 (406)
T TIGR03680 159 IKEFV-K---------GTVAENAPIIPVSALHNANIDALLEAIEKF 194 (406)
T ss_pred HHhhh-h---------hcccCCCeEEEEECCCCCChHHHHHHHHHh
Confidence 11110 0 001134689999999999999999999864
No 205
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.83 E-value=5.8e-20 Score=122.27 Aligned_cols=137 Identities=23% Similarity=0.286 Sum_probs=93.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCeEEEEEEcCCh----hhhHHhHHhhhccCCEEEEEEe
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGH----QMARRVWKDYYAKVDAVVYLID 96 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~----~~~~~~~~~~~~~~d~ii~v~d 96 (193)
.||.++|+.|||||||+++|.+.+.. ...+..+.+.+ .++||||. ..+.......-.++|++++|.|
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~~------~~KTq~i~~~~---~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~d 72 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEIR------YKKTQAIEYYD---NTIDTPGEYIENPRFYHALIVTAQDADVVLLLQD 72 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCCC------cCccceeEecc---cEEECChhheeCHHHHHHHHHHHhhCCEEEEEec
Confidence 48999999999999999999885531 12233344433 35899993 3334433444568999999999
Q ss_pred CCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC-CCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEee
Q 029453 97 AYDKERFSESKRELDALLSDEALADVPFLILGNKIDIP-YAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSI 175 (193)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 175 (193)
++++.+ ...-.+... -+.|+|=|+||+|+. .....+..++.+...- .-++|++|+
T Consensus 73 at~~~~--~~pP~fa~~------f~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG----------------~~~if~vS~ 128 (143)
T PF10662_consen 73 ATEPRS--VFPPGFASM------FNKPVIGVITKIDLPSDDANIERAKKWLKNAG----------------VKEIFEVSA 128 (143)
T ss_pred CCCCCc--cCCchhhcc------cCCCEEEEEECccCccchhhHHHHHHHHHHcC----------------CCCeEEEEC
Confidence 998632 222222233 268999999999998 3344444444443332 125699999
Q ss_pred ecCCChhHHHHhhhh
Q 029453 176 VRKMGYGEGFKWLSQ 190 (193)
Q Consensus 176 ~~~~gi~~~~~~i~~ 190 (193)
.+|+|++++.++|.+
T Consensus 129 ~~~eGi~eL~~~L~~ 143 (143)
T PF10662_consen 129 VTGEGIEELKDYLEE 143 (143)
T ss_pred CCCcCHHHHHHHHhC
Confidence 999999999999863
No 206
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.83 E-value=4.4e-20 Score=150.54 Aligned_cols=142 Identities=22% Similarity=0.178 Sum_probs=96.2
Q ss_pred cCCCCCHHHHHHHHhcCCcc-ccCC--CCCcceeEEEeCCeEEEEEEcCChhhhHHh------HHhhh--ccCCEEEEEE
Q 029453 27 GLDNSGKTTLLHMLKDERLV-QHQP--TQYPTSEELSIGKIKFKAFDLGGHQMARRV------WKDYY--AKVDAVVYLI 95 (193)
Q Consensus 27 G~~~~GKssl~~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~------~~~~~--~~~d~ii~v~ 95 (193)
|++|||||||+|++.+.... .+.+ |.......+.+++..+.+|||||+.++... ...++ +.+|++++|+
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~Vv 80 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNVV 80 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEEe
Confidence 89999999999999987653 3333 333444566778888999999998765332 23333 3689999999
Q ss_pred eCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEee
Q 029453 96 DAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSI 175 (193)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 175 (193)
|+++.+. ...+...+.+ .+.|+++|+||+|+.+........+.+.... ..+++++||
T Consensus 81 Dat~ler---~l~l~~ql~~----~~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~l----------------g~pvv~tSA 137 (591)
T TIGR00437 81 DASNLER---NLYLTLQLLE----LGIPMILALNLVDEAEKKGIRIDEEKLEERL----------------GVPVVPTSA 137 (591)
T ss_pred cCCcchh---hHHHHHHHHh----cCCCEEEEEehhHHHHhCCChhhHHHHHHHc----------------CCCEEEEEC
Confidence 9987542 2233333322 4799999999999863221111111111111 146899999
Q ss_pred ecCCChhHHHHhhhhh
Q 029453 176 VRKMGYGEGFKWLSQY 191 (193)
Q Consensus 176 ~~~~gi~~~~~~i~~~ 191 (193)
++|+|++++++++.+.
T Consensus 138 ~tg~Gi~eL~~~i~~~ 153 (591)
T TIGR00437 138 TEGRGIERLKDAIRKA 153 (591)
T ss_pred CCCCCHHHHHHHHHHH
Confidence 9999999999999764
No 207
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.83 E-value=3.2e-19 Score=129.46 Aligned_cols=151 Identities=17% Similarity=0.086 Sum_probs=95.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCc---------------------------ccc-------CCCCCcceeEEEeCCeEEE
Q 029453 22 KILFLGLDNSGKTTLLHMLKDERL---------------------------VQH-------QPTQYPTSEELSIGKIKFK 67 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~~~---------------------------~~~-------~~t~~~~~~~~~~~~~~~~ 67 (193)
+|+++|++++|||||+.++....- ... ..|.......+.+++..+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 489999999999999999852110 000 1133444566778889999
Q ss_pred EEEcCChhhhHHhHHhhhccCCEEEEEEeCCChhh-----HH-HHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC-CC--
Q 029453 68 AFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKER-----FS-ESKRELDALLSDEALADVPFLILGNKIDIPYA-AS-- 138 (193)
Q Consensus 68 ~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~-----~~-~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~-~~-- 138 (193)
+|||||+..+...+...++.+|++++|+|++++.. .. .....+. +.... ..+|+++++||+|+... ..
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~iiivvNK~Dl~~~~~~~~ 157 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHAL-LARTL--GVKQLIVAVNKMDDVTVNWSEE 157 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHH-HHHHc--CCCeEEEEEEccccccccccHH
Confidence 99999998887777777888999999999987421 11 1112222 22221 23689999999999732 12
Q ss_pred -HHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeeecCCChhH
Q 029453 139 -EDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGE 183 (193)
Q Consensus 139 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 183 (193)
.+++...+.... ... ......++++++||++|.|+++
T Consensus 158 ~~~~i~~~l~~~l-~~~-------~~~~~~~~ii~iSA~tg~gi~~ 195 (219)
T cd01883 158 RYDEIKKELSPFL-KKV-------GYNPKDVPFIPISGLTGDNLIE 195 (219)
T ss_pred HHHHHHHHHHHHH-HHc-------CCCcCCceEEEeecCcCCCCCc
Confidence 122232222111 000 0001347899999999999873
No 208
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.82 E-value=2.4e-19 Score=140.92 Aligned_cols=166 Identities=20% Similarity=0.133 Sum_probs=102.3
Q ss_pred hCCCCcccEEEEEcCCCCCHHHHHHHHhcCCcccc--C----CCCCcceeE--------------E--E--e---C----
Q 029453 14 LGLWQKEAKILFLGLDNSGKTTLLHMLKDERLVQH--Q----PTQYPTSEE--------------L--S--I---G---- 62 (193)
Q Consensus 14 ~~~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~--~----~t~~~~~~~--------------~--~--~---~---- 62 (193)
+...+++++|+++|+.++|||||+..+.+...... + .|....... + . . +
T Consensus 3 ~~~~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (411)
T PRK04000 3 WEKVQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETE 82 (411)
T ss_pred cccCCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccc
Confidence 34567889999999999999999999965321111 0 011110000 0 0 0 0
Q ss_pred -CeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHH
Q 029453 63 -KIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDE 141 (193)
Q Consensus 63 -~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~ 141 (193)
...+.+|||||++++...+......+|++++|+|++++.........+..+ ... ...|+++|+||+|+.......+
T Consensus 83 ~~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l-~~~--~i~~iiVVlNK~Dl~~~~~~~~ 159 (411)
T PRK04000 83 LLRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMAL-DII--GIKNIVIVQNKIDLVSKERALE 159 (411)
T ss_pred cccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHH-HHc--CCCcEEEEEEeeccccchhHHH
Confidence 257899999999998777666677889999999999652111111122222 221 2347899999999975322211
Q ss_pred HHHhhCCCccccCCCcccCCCCCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 142 LRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
..+.+.... .. ......+++++||++|.|+++++++|.+.+
T Consensus 160 ~~~~i~~~l-~~---------~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l 200 (411)
T PRK04000 160 NYEQIKEFV-KG---------TVAENAPIIPVSALHKVNIDALIEAIEEEI 200 (411)
T ss_pred HHHHHHHHh-cc---------ccCCCCeEEEEECCCCcCHHHHHHHHHHhC
Confidence 111111100 00 001236899999999999999999998753
No 209
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.82 E-value=3.9e-19 Score=142.49 Aligned_cols=145 Identities=25% Similarity=0.281 Sum_probs=110.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCcc-ccCC--CCCcceeEEEeCCeEEEEEEcCChhhh------HHhHHhhh--cc
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERLV-QHQP--TQYPTSEELSIGKIKFKAFDLGGHQMA------RRVWKDYY--AK 87 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~------~~~~~~~~--~~ 87 (193)
+..+|+++|+||+||||++|++.+.... .+.| |.+.....+.+.+.+++++|+||--.. +.....++ .+
T Consensus 2 ~~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~ 81 (653)
T COG0370 2 KKLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEGK 81 (653)
T ss_pred CcceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhcCC
Confidence 5678999999999999999999988755 5555 777888899999999999999992211 12222332 46
Q ss_pred CCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC----CCCHHHHHHhhCCCccccCCCcccCCCC
Q 029453 88 VDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY----AASEDELRYHMGLTNFTTGKGNVNLDNT 163 (193)
Q Consensus 88 ~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (193)
+|+++.|+|++|.++--.+.-++.++ +.|+++++|++|..+ ..+.+.+.+.++.
T Consensus 82 ~D~ivnVvDAtnLeRnLyltlQLlE~-------g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~LGv--------------- 139 (653)
T COG0370 82 PDLIVNVVDATNLERNLYLTLQLLEL-------GIPMILALNMIDEAKKRGIRIDIEKLSKLLGV--------------- 139 (653)
T ss_pred CCEEEEEcccchHHHHHHHHHHHHHc-------CCCeEEEeccHhhHHhcCCcccHHHHHHHhCC---------------
Confidence 89999999999986544444444444 889999999999862 3344456555544
Q ss_pred CCccEEEEEEeeecCCChhHHHHhhhh
Q 029453 164 NVRPLEVFMCSIVRKMGYGEGFKWLSQ 190 (193)
Q Consensus 164 ~~~~~~~~~~Sa~~~~gi~~~~~~i~~ 190 (193)
+++++||++|.|++++++.+.+
T Consensus 140 -----PVv~tvA~~g~G~~~l~~~i~~ 161 (653)
T COG0370 140 -----PVVPTVAKRGEGLEELKRAIIE 161 (653)
T ss_pred -----CEEEEEeecCCCHHHHHHHHHH
Confidence 5699999999999999998865
No 210
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.82 E-value=9.8e-20 Score=144.19 Aligned_cols=157 Identities=15% Similarity=0.056 Sum_probs=99.0
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCC--ccc--------------------------------cCCCCCcceeEEEeC
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDER--LVQ--------------------------------HQPTQYPTSEELSIG 62 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~--~~~--------------------------------~~~t~~~~~~~~~~~ 62 (193)
.+..++|+++|+.++|||||+++|.... ... ...|.......+..+
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~ 83 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD 83 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC
Confidence 4577899999999999999999997421 110 001222334455667
Q ss_pred CeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCChhhHH-HHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC--H
Q 029453 63 KIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFS-ESKRELDALLSDEALADVPFLILGNKIDIPYAAS--E 139 (193)
Q Consensus 63 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~-~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~--~ 139 (193)
+..+.+||||||+++.......+..+|++++|+|++++++.. ........+.... ...|+++++||+|+..... .
T Consensus 84 ~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~--~~~~iIVviNK~Dl~~~~~~~~ 161 (426)
T TIGR00483 84 KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTL--GINQLIVAINKMDSVNYDEEEF 161 (426)
T ss_pred CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHc--CCCeEEEEEEChhccCccHHHH
Confidence 889999999999988776666778999999999999874321 1111122222221 2357999999999963211 1
Q ss_pred HHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeeecCCChhH
Q 029453 140 DELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGE 183 (193)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 183 (193)
++...++.... ... ......++++++||++|.|+++
T Consensus 162 ~~~~~ei~~~~-~~~-------g~~~~~~~~i~iSA~~g~ni~~ 197 (426)
T TIGR00483 162 EAIKKEVSNLI-KKV-------GYNPDTVPFIPISAWNGDNVIK 197 (426)
T ss_pred HHHHHHHHHHH-HHc-------CCCcccceEEEeeccccccccc
Confidence 11111111100 000 0001346899999999999986
No 211
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.82 E-value=6.6e-19 Score=128.93 Aligned_cols=166 Identities=18% Similarity=0.194 Sum_probs=110.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCcc--------------cc---CC----CCCcceeEEEeCCeEEEEEEcCChhhhHHh
Q 029453 22 KILFLGLDNSGKTTLLHMLKDERLV--------------QH---QP----TQYPTSEELSIGKIKFKAFDLGGHQMARRV 80 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~~~~--------------~~---~~----t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~ 80 (193)
+|+++|++|+|||||++++....-. .. +. +.......+.+++..+.+|||||+..+...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 5899999999999999999653211 00 00 122234566778899999999999998888
Q ss_pred HHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCC---CHHHHHHhhCCCccccCCCc
Q 029453 81 WKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAA---SEDELRYHMGLTNFTTGKGN 157 (193)
Q Consensus 81 ~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~ 157 (193)
...+++.+|++++|+|+++.... ....++..+ .. .++|+++++||+|+.+.. ..+++...++.....-+...
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~-~~---~~~P~iivvNK~D~~~a~~~~~~~~i~~~~~~~~~~~~~p~ 155 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQA-QTRILWRLL-RK---LNIPTIIFVNKIDRAGADLEKVYQEIKEKLSSDIVPMQKVG 155 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHH-HH---cCCCEEEEEECccccCCCHHHHHHHHHHHHCCCeEEEECCc
Confidence 88889999999999999886322 233333333 22 478999999999987432 22335555543221110000
Q ss_pred ---------------------------------ccCC-----------CCCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 158 ---------------------------------VNLD-----------NTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 158 ---------------------------------~~~~-----------~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
+.++ -......+++..||.++.|+..+++.|.+++
T Consensus 156 ~~~~~~~~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~~~~~Pv~~gsa~~~~Gv~~ll~~~~~~~ 234 (237)
T cd04168 156 LAPNICETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKRKVFPVYHGSALKGIGIEELLEGITKLF 234 (237)
T ss_pred EeeeeeeeeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCeEEEEEccccCCcCHHHHHHHHHHhc
Confidence 0000 0012346899999999999999999998764
No 212
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.81 E-value=4.4e-19 Score=130.19 Aligned_cols=152 Identities=23% Similarity=0.316 Sum_probs=110.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcc-ccCC--CCCcceeEEEeCCeE-EEEEEcCChhhh-------HHhHHhhhccCC
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLV-QHQP--TQYPTSEELSIGKIK-FKAFDLGGHQMA-------RRVWKDYYAKVD 89 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~-~~~~D~~g~~~~-------~~~~~~~~~~~d 89 (193)
..++++|.||||||||++.++..+.. ..++ |..|+..++.++... +.+-|.||.-+- ...+.+.++.++
T Consensus 197 advGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~~ 276 (366)
T KOG1489|consen 197 ADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIERCK 276 (366)
T ss_pred cccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccceeEeccCccccccccccCcccHHHHHHHHhhc
Confidence 36899999999999999999987754 3333 667777888887654 889999994322 223345678999
Q ss_pred EEEEEEeCCCh---hhHHHHHHHHHHHHh-CCCCCCCcEEEEeeCCCCCCCCCH--HHHHHhhCCCccccCCCcccCCCC
Q 029453 90 AVVYLIDAYDK---ERFSESKRELDALLS-DEALADVPFLILGNKIDIPYAASE--DELRYHMGLTNFTTGKGNVNLDNT 163 (193)
Q Consensus 90 ~ii~v~d~~~~---~~~~~~~~~~~~~~~-~~~~~~~pviiv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 163 (193)
.++||+|.+.+ ..++.....+.++-. ...+.+.|.++|+||+|++..+.. .++.+.+..
T Consensus 277 ~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~~~l~~L~~~lq~--------------- 341 (366)
T KOG1489|consen 277 GLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEKNLLSSLAKRLQN--------------- 341 (366)
T ss_pred eEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHHHHHHHHHHHcCC---------------
Confidence 99999999987 556665555555432 345578999999999999622211 233333322
Q ss_pred CCccEEEEEEeeecCCChhHHHHhhhhh
Q 029453 164 NVRPLEVFMCSIVRKMGYGEGFKWLSQY 191 (193)
Q Consensus 164 ~~~~~~~~~~Sa~~~~gi~~~~~~i~~~ 191 (193)
..++++||+.++|+.++++.|...
T Consensus 342 ----~~V~pvsA~~~egl~~ll~~lr~~ 365 (366)
T KOG1489|consen 342 ----PHVVPVSAKSGEGLEELLNGLREL 365 (366)
T ss_pred ----CcEEEeeeccccchHHHHHHHhhc
Confidence 258999999999999999988653
No 213
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.81 E-value=4.9e-19 Score=144.77 Aligned_cols=155 Identities=18% Similarity=0.106 Sum_probs=100.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCcccc--CCCCCcc----eeEEEe-CCeEEEEEEcCChhhhHHhHHhhhccCCEEEEE
Q 029453 22 KILFLGLDNSGKTTLLHMLKDERLVQH--QPTQYPT----SEELSI-GKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYL 94 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~~~~~~--~~t~~~~----~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 94 (193)
-|+++|++++|||||++++.+...... +...+.+ ...+.. ++..+.+||+|||+++.......+..+|++++|
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lLV 81 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNMLAGVGGIDHALLV 81 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHHHHHHHHHhhcCCEEEEE
Confidence 589999999999999999986432211 1112222 222222 356789999999999988777888999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhCCCCCCCc-EEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEE
Q 029453 95 IDAYDKERFSESKRELDALLSDEALADVP-FLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMC 173 (193)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-viiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (193)
+|++++- .........++.. .++| +++|+||+|+......++....+.... . .......+++++
T Consensus 82 Vda~eg~--~~qT~ehl~il~~---lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l-~---------~~~~~~~~ii~V 146 (614)
T PRK10512 82 VACDDGV--MAQTREHLAILQL---TGNPMLTVALTKADRVDEARIAEVRRQVKAVL-R---------EYGFAEAKLFVT 146 (614)
T ss_pred EECCCCC--cHHHHHHHHHHHH---cCCCeEEEEEECCccCCHHHHHHHHHHHHHHH-H---------hcCCCCCcEEEE
Confidence 9998742 2222222233332 2455 679999999964322222222221111 0 000123579999
Q ss_pred eeecCCChhHHHHhhhhh
Q 029453 174 SIVRKMGYGEGFKWLSQY 191 (193)
Q Consensus 174 Sa~~~~gi~~~~~~i~~~ 191 (193)
||++|.|+++++++|.+.
T Consensus 147 SA~tG~gI~~L~~~L~~~ 164 (614)
T PRK10512 147 AATEGRGIDALREHLLQL 164 (614)
T ss_pred eCCCCCCCHHHHHHHHHh
Confidence 999999999999999753
No 214
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.81 E-value=1.1e-18 Score=121.17 Aligned_cols=154 Identities=20% Similarity=0.265 Sum_probs=94.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCcc-ccCCCCCcce--eEEEeCCeEEEEEEcCChh----------hhHHhHHhhhc--
Q 029453 22 KILFLGLDNSGKTTLLHMLKDERLV-QHQPTQYPTS--EELSIGKIKFKAFDLGGHQ----------MARRVWKDYYA-- 86 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~--~~~~~~~~~~~~~D~~g~~----------~~~~~~~~~~~-- 86 (193)
.|+++|.+|||||||++.+.+.... ...++.+.+. .....+ ..+.+|||||.. .+......++.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVN-DKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENR 79 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEcc-CeEEEecCCCccccccCHHHHHHHHHHHHHHHHhC
Confidence 4899999999999999999954433 3333333222 222333 388999999943 23334444443
Q ss_pred -cCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCC
Q 029453 87 -KVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNV 165 (193)
Q Consensus 87 -~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (193)
.++.+++++|..+.... ....+...+.. .+.|+++++||+|+................. +. ..
T Consensus 80 ~~~~~~~~v~d~~~~~~~--~~~~~~~~l~~---~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l-~~----------~~ 143 (170)
T cd01876 80 ENLKGVVLLIDSRHGPTE--IDLEMLDWLEE---LGIPFLVVLTKADKLKKSELAKALKEIKKEL-KL----------FE 143 (170)
T ss_pred hhhhEEEEEEEcCcCCCH--hHHHHHHHHHH---cCCCEEEEEEchhcCChHHHHHHHHHHHHHH-Hh----------cc
Confidence 46788999999765221 11112222222 2589999999999964333222222221111 00 01
Q ss_pred ccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 166 RPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 166 ~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
...+++++||+++.|+++++++|.+.+
T Consensus 144 ~~~~~~~~Sa~~~~~~~~l~~~l~~~~ 170 (170)
T cd01876 144 IDPPIILFSSLKGQGIDELRALIEKWL 170 (170)
T ss_pred CCCceEEEecCCCCCHHHHHHHHHHhC
Confidence 335789999999999999999998764
No 215
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.81 E-value=1.8e-18 Score=140.88 Aligned_cols=156 Identities=19% Similarity=0.199 Sum_probs=108.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC--Ccccc-------------C----CCCCcceeEEEeCCeEEEEEEcCChhhhHHhHH
Q 029453 22 KILFLGLDNSGKTTLLHMLKDE--RLVQH-------------Q----PTQYPTSEELSIGKIKFKAFDLGGHQMARRVWK 82 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~--~~~~~-------------~----~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~ 82 (193)
+|+++|+.++|||||++++... .+... + .|.......+.+.+..+.+||||||.+|.....
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~ 82 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVE 82 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHH
Confidence 6999999999999999999752 22111 0 122233446778899999999999999998888
Q ss_pred hhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC---HHHHHHhhCCCccccCCCccc
Q 029453 83 DYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAAS---EDELRYHMGLTNFTTGKGNVN 159 (193)
Q Consensus 83 ~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~---~~~~~~~~~~~~~~~~~~~~~ 159 (193)
.++..+|++++|+|+.+.. ......++..+.. .++|+++|+||+|+..... .+++.+.+..... ..
T Consensus 83 ~~l~~aD~alLVVDa~~G~-~~qT~~~l~~a~~----~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~----~~-- 151 (594)
T TIGR01394 83 RVLGMVDGVLLLVDASEGP-MPQTRFVLKKALE----LGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGA----DD-- 151 (594)
T ss_pred HHHHhCCEEEEEEeCCCCC-cHHHHHHHHHHHH----CCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhcc----cc--
Confidence 8999999999999998752 2333444444433 4789999999999864322 1223332221110 00
Q ss_pred CCCCCCccEEEEEEeeecCC----------ChhHHHHhhhhhc
Q 029453 160 LDNTNVRPLEVFMCSIVRKM----------GYGEGFKWLSQYI 192 (193)
Q Consensus 160 ~~~~~~~~~~~~~~Sa~~~~----------gi~~~~~~i~~~l 192 (193)
....++++++||++|. |+..+++.|.+.+
T Consensus 152 ----e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~l 190 (594)
T TIGR01394 152 ----EQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHV 190 (594)
T ss_pred ----ccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhC
Confidence 0023579999999996 7999999987754
No 216
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.81 E-value=7.8e-19 Score=128.33 Aligned_cols=168 Identities=19% Similarity=0.151 Sum_probs=107.6
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCccccCC----CCCcceeEEEeCCeEEEEEEcCChhh------------hHHhH
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQHQP----TQYPTSEELSIGKIKFKAFDLGGHQM------------ARRVW 81 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~D~~g~~~------------~~~~~ 81 (193)
.+...|+++|+||+|||||.|++.+.+....+. |+......+.-+...+.++||||... +.+-.
T Consensus 70 ~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~ 149 (379)
T KOG1423|consen 70 QKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNP 149 (379)
T ss_pred ceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhCH
Confidence 578899999999999999999999998765433 55556677777889999999999221 11122
Q ss_pred HhhhccCCEEEEEEeCCChhhH--HHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCC-CHHHHHHhhCCCcc-------
Q 029453 82 KDYYAKVDAVVYLIDAYDKERF--SESKRELDALLSDEALADVPFLILGNKIDIPYAA-SEDELRYHMGLTNF------- 151 (193)
Q Consensus 82 ~~~~~~~d~ii~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~-~~~~~~~~~~~~~~------- 151 (193)
...+..+|+++.|+|+++.... ......+..+ .++|-++|.||.|....- ..-.+...+.....
T Consensus 150 ~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~y------s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v 223 (379)
T KOG1423|consen 150 RDAAQNADCVVVVVDASATRTPLHPRVLHMLEEY------SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEV 223 (379)
T ss_pred HHHHhhCCEEEEEEeccCCcCccChHHHHHHHHH------hcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhH
Confidence 3456789999999999963211 1122333333 478999999999975211 11111111111110
Q ss_pred ----ccCCC-cccC-CCCCCccEEEEEEeeecCCChhHHHHhhhhh
Q 029453 152 ----TTGKG-NVNL-DNTNVRPLEVFMCSIVRKMGYGEGFKWLSQY 191 (193)
Q Consensus 152 ----~~~~~-~~~~-~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~ 191 (193)
...++ ...- .-.+.....+|++||++|+|++++.+||..+
T Consensus 224 ~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsq 269 (379)
T KOG1423|consen 224 QEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQ 269 (379)
T ss_pred HHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhc
Confidence 00000 0000 0011235689999999999999999998764
No 217
>PRK10218 GTP-binding protein; Provisional
Probab=99.81 E-value=1.1e-18 Score=142.14 Aligned_cols=158 Identities=15% Similarity=0.178 Sum_probs=107.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc--CCcccc-------------CCCCC----cceeEEEeCCeEEEEEEcCChhhhHHh
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKD--ERLVQH-------------QPTQY----PTSEELSIGKIKFKAFDLGGHQMARRV 80 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~--~~~~~~-------------~~t~~----~~~~~~~~~~~~~~~~D~~g~~~~~~~ 80 (193)
--+|+++|+.++|||||++++.. +.+... +.+.+ .....+.+++..+.+|||||+..|...
T Consensus 5 iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~~ 84 (607)
T PRK10218 5 LRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGGE 84 (607)
T ss_pred ceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHHH
Confidence 34899999999999999999986 222211 11222 223345677899999999999999988
Q ss_pred HHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCH---HHHHHhhCCCccccCCCc
Q 029453 81 WKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASE---DELRYHMGLTNFTTGKGN 157 (193)
Q Consensus 81 ~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~---~~~~~~~~~~~~~~~~~~ 157 (193)
+..+++.+|++++|+|+.+.... .....+..... .++|.++++||+|+...... +++...+.... ..
T Consensus 85 v~~~l~~aDg~ILVVDa~~G~~~-qt~~~l~~a~~----~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~---~~-- 154 (607)
T PRK10218 85 VERVMSMVDSVLLVVDAFDGPMP-QTRFVTKKAFA----YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLD---AT-- 154 (607)
T ss_pred HHHHHHhCCEEEEEEecccCccH-HHHHHHHHHHH----cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccC---cc--
Confidence 89999999999999999875322 22223333322 47899999999998743332 23333332111 00
Q ss_pred ccCCCCCCccEEEEEEeeecCC----------ChhHHHHhhhhhc
Q 029453 158 VNLDNTNVRPLEVFMCSIVRKM----------GYGEGFKWLSQYI 192 (193)
Q Consensus 158 ~~~~~~~~~~~~~~~~Sa~~~~----------gi~~~~~~i~~~l 192 (193)
.....++++++||++|. |+..+++.|.+.+
T Consensus 155 -----~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~i 194 (607)
T PRK10218 155 -----DEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHV 194 (607)
T ss_pred -----ccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhC
Confidence 01134789999999998 5888888887654
No 218
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.81 E-value=8.1e-19 Score=142.81 Aligned_cols=162 Identities=17% Similarity=0.197 Sum_probs=101.4
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccccCC-----CCCcceeEEEe---------C-------CeEEEEEEcCChh
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQP-----TQYPTSEELSI---------G-------KIKFKAFDLGGHQ 75 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~-----t~~~~~~~~~~---------~-------~~~~~~~D~~g~~ 75 (193)
..+++.|+++|++++|||||++++.+.......+ +.+........ . -..+.+||||||+
T Consensus 3 ~~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e 82 (586)
T PRK04004 3 KLRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHE 82 (586)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChH
Confidence 3577899999999999999999998665433222 11111100000 0 0126899999999
Q ss_pred hhHHhHHhhhccCCEEEEEEeCCC---hhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCH-------------
Q 029453 76 MARRVWKDYYAKVDAVVYLIDAYD---KERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASE------------- 139 (193)
Q Consensus 76 ~~~~~~~~~~~~~d~ii~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~------------- 139 (193)
.|..++......+|++++|+|+++ ++++... .++.. .+.|+++++||+|+.+....
T Consensus 83 ~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i-----~~~~~---~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~ 154 (586)
T PRK04004 83 AFTNLRKRGGALADIAILVVDINEGFQPQTIEAI-----NILKR---RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQ 154 (586)
T ss_pred HHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHH-----HHHHH---cCCCEEEEEECcCCchhhhhhcCchHHHHHhhh
Confidence 999888888889999999999987 3333222 12222 47899999999998521110
Q ss_pred -HHHH-----------HhhCCCccccCCCcccC--CCCCCccEEEEEEeeecCCChhHHHHhhhh
Q 029453 140 -DELR-----------YHMGLTNFTTGKGNVNL--DNTNVRPLEVFMCSIVRKMGYGEGFKWLSQ 190 (193)
Q Consensus 140 -~~~~-----------~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~ 190 (193)
.... ..+... +...+.. ...+....+++++||++|+|++++++.+..
T Consensus 155 ~~~v~~~f~~~l~ev~~~L~~~----g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~ 215 (586)
T PRK04004 155 SQRVQQELEEKLYELIGQLSEL----GFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAG 215 (586)
T ss_pred hHHHHHHHHHHHHHHHHHHHhc----CCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHH
Confidence 0001 111100 0000000 011234578999999999999999988753
No 219
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.80 E-value=8e-18 Score=124.39 Aligned_cols=169 Identities=17% Similarity=0.174 Sum_probs=122.4
Q ss_pred HHHHHHHHHHHhCCCC-cccEEEEEcCCCCCHHHHHHHHhcCCcc-ccCC--CCCcceeEEEeCCeEEEEEEcCChh---
Q 029453 3 LVDWFYGILVSLGLWQ-KEAKILFLGLDNSGKTTLLHMLKDERLV-QHQP--TQYPTSEELSIGKIKFKAFDLGGHQ--- 75 (193)
Q Consensus 3 ~~~~~~~~~~~~~~~~-~~~~i~i~G~~~~GKssl~~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~--- 75 (193)
++.-+...+.++|... ..+.|.+.|+||+|||||++.+.+.+.. ..+| |.+.+.+.+..+...+.++||||.-
T Consensus 150 fL~~~r~~l~~LP~Idp~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRP 229 (346)
T COG1084 150 FLRKARDHLKKLPAIDPDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRP 229 (346)
T ss_pred HHHHHHHHHhcCCCCCCCCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCCceEEEecCCcccCCC
Confidence 3455566777777777 7889999999999999999999987755 4555 7778889999999999999999921
Q ss_pred --h----hHHhHHhhhccCCEEEEEEeCCC--hhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhC
Q 029453 76 --M----ARRVWKDYYAKVDAVVYLIDAYD--KERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMG 147 (193)
Q Consensus 76 --~----~~~~~~~~~~~~d~ii~v~d~~~--~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~ 147 (193)
+ ......+.-+-.++++|++|.+. .-+++.....+.++-..+ +.|+++|+||+|.......+++...+.
T Consensus 230 l~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f---~~p~v~V~nK~D~~~~e~~~~~~~~~~ 306 (346)
T COG1084 230 LEERNEIERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELF---KAPIVVVINKIDIADEEKLEEIEASVL 306 (346)
T ss_pred hHHhcHHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhc---CCCeEEEEecccccchhHHHHHHHHHH
Confidence 1 11122222345899999999986 445666777777775543 489999999999975555555554432
Q ss_pred CCccccCCCcccCCCCCCccEEEEEEeeecCCChhHHHHhhhh
Q 029453 148 LTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQ 190 (193)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~ 190 (193)
..- ......+|+..+.+++.+.+.+..
T Consensus 307 ~~~----------------~~~~~~~~~~~~~~~d~~~~~v~~ 333 (346)
T COG1084 307 EEG----------------GEEPLKISATKGCGLDKLREEVRK 333 (346)
T ss_pred hhc----------------cccccceeeeehhhHHHHHHHHHH
Confidence 221 224567788888888877766644
No 220
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.79 E-value=3.7e-18 Score=133.47 Aligned_cols=158 Identities=18% Similarity=0.185 Sum_probs=114.2
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCccccCC---CCCcceeEEEeC---CeEEEEEEcCChhhhHHhHHhhhccCCEE
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQHQP---TQYPTSEELSIG---KIKFKAFDLGGHQMARRVWKDYYAKVDAV 91 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~---t~~~~~~~~~~~---~~~~~~~D~~g~~~~~~~~~~~~~~~d~i 91 (193)
.+.+-|+++|+...|||||+..+-.......+. |.......+..+ ...+.++|||||+.|..+....-+-+|++
T Consensus 3 ~R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIa 82 (509)
T COG0532 3 LRPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIA 82 (509)
T ss_pred CCCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEE
Confidence 467889999999999999999998877665443 444444555553 35899999999999999998888889999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEE
Q 029453 92 VYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVF 171 (193)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (193)
++|+++++. +......-...++. .+.|+++++||+|++. ..++....++...-+ .+..+.+...++
T Consensus 83 ILVVa~dDG--v~pQTiEAI~hak~---a~vP~iVAiNKiDk~~-~np~~v~~el~~~gl--------~~E~~gg~v~~V 148 (509)
T COG0532 83 ILVVAADDG--VMPQTIEAINHAKA---AGVPIVVAINKIDKPE-ANPDKVKQELQEYGL--------VPEEWGGDVIFV 148 (509)
T ss_pred EEEEEccCC--cchhHHHHHHHHHH---CCCCEEEEEecccCCC-CCHHHHHHHHHHcCC--------CHhhcCCceEEE
Confidence 999999986 22222211222222 5899999999999974 334443333332211 112344568999
Q ss_pred EEeeecCCChhHHHHhhh
Q 029453 172 MCSIVRKMGYGEGFKWLS 189 (193)
Q Consensus 172 ~~Sa~~~~gi~~~~~~i~ 189 (193)
++||++|+|++++++.|.
T Consensus 149 pvSA~tg~Gi~eLL~~il 166 (509)
T COG0532 149 PVSAKTGEGIDELLELIL 166 (509)
T ss_pred EeeccCCCCHHHHHHHHH
Confidence 999999999999999874
No 221
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.79 E-value=3.6e-20 Score=125.13 Aligned_cols=157 Identities=15% Similarity=0.262 Sum_probs=121.2
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc----eeEEEeCCeEEEEEEcCChhhhHHhHHhhhccCCEE
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPT----SEELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAV 91 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~----~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~i 91 (193)
.+.-+|++++|+.++||||++++++.+-+.. +..|.+.. ...+........+||++|++++.....+|++.+.+.
T Consensus 17 ~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~ 96 (246)
T KOG4252|consen 17 YERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQAS 96 (246)
T ss_pred hhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccce
Confidence 4567899999999999999999999877763 33343322 112233445677999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC--CCHHHHHHhhCCCccccCCCcccCCCCCCccEE
Q 029453 92 VYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYA--ASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLE 169 (193)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (193)
++|++-+|..+|+....|...+.... ..+|.++|-||+|+..+ ...++.+-...... +.
T Consensus 97 vLVFSTTDr~SFea~~~w~~kv~~e~--~~IPtV~vqNKIDlveds~~~~~evE~lak~l~-----------------~R 157 (246)
T KOG4252|consen 97 VLVFSTTDRYSFEATLEWYNKVQKET--ERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLH-----------------KR 157 (246)
T ss_pred EEEEecccHHHHHHHHHHHHHHHHHh--ccCCeEEeeccchhhHhhhcchHHHHHHHHHhh-----------------hh
Confidence 99999999999999999999996553 57999999999999732 22223222222111 35
Q ss_pred EEEEeeecCCChhHHHHhhhhhc
Q 029453 170 VFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 170 ~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
.+.+|++...|+..+|..|.+.+
T Consensus 158 lyRtSvked~NV~~vF~YLaeK~ 180 (246)
T KOG4252|consen 158 LYRTSVKEDFNVMHVFAYLAEKL 180 (246)
T ss_pred hhhhhhhhhhhhHHHHHHHHHHH
Confidence 58899999999999999987653
No 222
>PRK12736 elongation factor Tu; Reviewed
Probab=99.79 E-value=4.1e-18 Score=133.49 Aligned_cols=164 Identities=19% Similarity=0.151 Sum_probs=102.2
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHHhcCCcc------------c---c--CC--CCCcceeEEEeCCeEEEEEEcCChhh
Q 029453 16 LWQKEAKILFLGLDNSGKTTLLHMLKDERLV------------Q---H--QP--TQYPTSEELSIGKIKFKAFDLGGHQM 76 (193)
Q Consensus 16 ~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~------------~---~--~~--t~~~~~~~~~~~~~~~~~~D~~g~~~ 76 (193)
..++.++|+++|++++|||||+++|.+.... . . .. |.......+..++..+.++|||||++
T Consensus 8 ~~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~ 87 (394)
T PRK12736 8 RSKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHAD 87 (394)
T ss_pred cCCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHH
Confidence 4678899999999999999999999753110 0 0 00 22222222333567889999999999
Q ss_pred hHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCc-EEEEeeCCCCCCCCCHHH-HHHhhCCCccccC
Q 029453 77 ARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVP-FLILGNKIDIPYAASEDE-LRYHMGLTNFTTG 154 (193)
Q Consensus 77 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-viiv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~ 154 (193)
|..........+|++++|+|+.++- ......+..++.. .++| +++++||+|+.......+ +.+++....-...
T Consensus 88 f~~~~~~~~~~~d~~llVvd~~~g~--~~~t~~~~~~~~~---~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~ 162 (394)
T PRK12736 88 YVKNMITGAAQMDGAILVVAATDGP--MPQTREHILLARQ---VGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYD 162 (394)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCC--chhHHHHHHHHHH---cCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhC
Confidence 8777777778899999999998752 2222222223222 3677 678899999863222111 2212211110000
Q ss_pred CCcccCCCCCCccEEEEEEeeecCC--------ChhHHHHhhhhhc
Q 029453 155 KGNVNLDNTNVRPLEVFMCSIVRKM--------GYGEGFKWLSQYI 192 (193)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~Sa~~~~--------gi~~~~~~i~~~l 192 (193)
. .....+++++||++|. ++.++++.|.+.+
T Consensus 163 ~--------~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~l 200 (394)
T PRK12736 163 F--------PGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYI 200 (394)
T ss_pred C--------CcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhC
Confidence 0 0123689999999983 6788888876643
No 223
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.79 E-value=3.6e-19 Score=123.56 Aligned_cols=122 Identities=23% Similarity=0.345 Sum_probs=75.2
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEe---CCeEEEEEEcCChhhhHHhHHhh---hccCCEEE
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSI---GKIKFKAFDLGGHQMARRVWKDY---YAKVDAVV 92 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~---~~~~~~~~D~~g~~~~~~~~~~~---~~~~d~ii 92 (193)
++..|.++|++|||||+|+.+|..+....+.....++. .... .+..+.++|+|||++.+...... ...+.++|
T Consensus 2 k~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~e~n~-~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~II 80 (181)
T PF09439_consen 2 KRPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSMENNI-AYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGII 80 (181)
T ss_dssp ---EEEEE-STTSSHHHHHHHHHHSS---B---SSEEE-ECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEEE
T ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCcCCeeccccCCc-eEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEEE
Confidence 45689999999999999999999987665554443333 2333 34689999999999887644443 77899999
Q ss_pred EEEeCCC-hhhHHHHHHHHHHHHhC--CCCCCCcEEEEeeCCCCCCCCCHHH
Q 029453 93 YLIDAYD-KERFSESKRELDALLSD--EALADVPFLILGNKIDIPYAASEDE 141 (193)
Q Consensus 93 ~v~d~~~-~~~~~~~~~~~~~~~~~--~~~~~~pviiv~nK~Dl~~~~~~~~ 141 (193)
||+|++. ...+......+-.++.. .....+|++|++||.|+..+.....
T Consensus 81 fvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~~~~~ 132 (181)
T PF09439_consen 81 FVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAKPPKK 132 (181)
T ss_dssp EEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT---HHH
T ss_pred EEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccCCHHH
Confidence 9999984 33344433333333332 2346799999999999986555444
No 224
>COG2262 HflX GTPases [General function prediction only]
Probab=99.77 E-value=3.2e-17 Score=124.58 Aligned_cols=154 Identities=18% Similarity=0.187 Sum_probs=109.6
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccc---cCCCCCcceeEEEeC-CeEEEEEEcCChh---------hhHHhHHh
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQ---HQPTQYPTSEELSIG-KIKFKAFDLGGHQ---------MARRVWKD 83 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~-~~~~~~~D~~g~~---------~~~~~~~~ 83 (193)
.+.-+.|+++|-.|||||||+|++.+..... --.|-+++...+.++ +..+.+-||.|.- .|.+...
T Consensus 189 ~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AFksTLE- 267 (411)
T COG2262 189 RSGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRDLPHPLVEAFKSTLE- 267 (411)
T ss_pred ccCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCCCceEEEecCccCcccCChHHHHHHHHHHH-
Confidence 4566799999999999999999998665432 223778888888887 5788899999932 3333333
Q ss_pred hhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCC
Q 029453 84 YYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNT 163 (193)
Q Consensus 84 ~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (193)
....+|.++.|+|++++.....+... ..++...+...+|+++|.||+|+..+..........
T Consensus 268 E~~~aDlllhVVDaSdp~~~~~~~~v-~~vL~el~~~~~p~i~v~NKiD~~~~~~~~~~~~~~----------------- 329 (411)
T COG2262 268 EVKEADLLLHVVDASDPEILEKLEAV-EDVLAEIGADEIPIILVLNKIDLLEDEEILAELERG----------------- 329 (411)
T ss_pred HhhcCCEEEEEeecCChhHHHHHHHH-HHHHHHcCCCCCCEEEEEecccccCchhhhhhhhhc-----------------
Confidence 24579999999999999644444443 344444444679999999999987543311100000
Q ss_pred CCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 164 NVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 164 ~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
. ...+.+||++|.|++.+++.|...+
T Consensus 330 --~-~~~v~iSA~~~~gl~~L~~~i~~~l 355 (411)
T COG2262 330 --S-PNPVFISAKTGEGLDLLRERIIELL 355 (411)
T ss_pred --C-CCeEEEEeccCcCHHHHHHHHHHHh
Confidence 0 1579999999999999999988754
No 225
>PRK12735 elongation factor Tu; Reviewed
Probab=99.77 E-value=1.5e-17 Score=130.42 Aligned_cols=163 Identities=15% Similarity=0.157 Sum_probs=100.2
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHHhcC-------Ccc-----c---cCC----CCCcceeEEEeCCeEEEEEEcCChhh
Q 029453 16 LWQKEAKILFLGLDNSGKTTLLHMLKDE-------RLV-----Q---HQP----TQYPTSEELSIGKIKFKAFDLGGHQM 76 (193)
Q Consensus 16 ~~~~~~~i~i~G~~~~GKssl~~~l~~~-------~~~-----~---~~~----t~~~~~~~~~~~~~~~~~~D~~g~~~ 76 (193)
..++.++|+++|++++|||||+++|.+. ... . .+. |.......+..++..+.++|||||++
T Consensus 8 ~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~ 87 (396)
T PRK12735 8 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHAD 87 (396)
T ss_pred CCCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHH
Confidence 4567889999999999999999999852 100 0 000 11112223344567899999999998
Q ss_pred hHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEE-EEeeCCCCCCCCC-HHHHHHhhCCCccccC
Q 029453 77 ARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFL-ILGNKIDIPYAAS-EDELRYHMGLTNFTTG 154 (193)
Q Consensus 77 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pvi-iv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~ 154 (193)
+.......+..+|++++|+|+.+... ......+ .++.. .++|.+ +++||+|+..... .+.+..++.... ...
T Consensus 88 f~~~~~~~~~~aD~~llVvda~~g~~-~qt~e~l-~~~~~---~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l-~~~ 161 (396)
T PRK12735 88 YVKNMITGAAQMDGAILVVSAADGPM-PQTREHI-LLARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELL-SKY 161 (396)
T ss_pred HHHHHHhhhccCCEEEEEEECCCCCc-hhHHHHH-HHHHH---cCCCeEEEEEEecCCcchHHHHHHHHHHHHHHH-HHc
Confidence 87777777889999999999987421 1122222 22222 367855 5799999963221 111222221111 000
Q ss_pred CCcccCCCCCCccEEEEEEeeecCC----------ChhHHHHhhhhh
Q 029453 155 KGNVNLDNTNVRPLEVFMCSIVRKM----------GYGEGFKWLSQY 191 (193)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~Sa~~~~----------gi~~~~~~i~~~ 191 (193)
.......+++++||++|. ++.++++.|.+.
T Consensus 162 -------~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~ 201 (396)
T PRK12735 162 -------DFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSY 201 (396)
T ss_pred -------CCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhc
Confidence 000024689999999984 567777777653
No 226
>CHL00071 tufA elongation factor Tu
Probab=99.77 E-value=2e-17 Score=130.21 Aligned_cols=152 Identities=16% Similarity=0.114 Sum_probs=95.9
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHHhcCCccc---------------cC--C--CCCcceeEEEeCCeEEEEEEcCChhh
Q 029453 16 LWQKEAKILFLGLDNSGKTTLLHMLKDERLVQ---------------HQ--P--TQYPTSEELSIGKIKFKAFDLGGHQM 76 (193)
Q Consensus 16 ~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~---------------~~--~--t~~~~~~~~~~~~~~~~~~D~~g~~~ 76 (193)
..+..++|+++|++++|||||+++|.+..-.. .+ + |.......+..++..+.++|||||..
T Consensus 8 ~~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~ 87 (409)
T CHL00071 8 RKKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHAD 87 (409)
T ss_pred CCCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHH
Confidence 35678999999999999999999998642110 00 0 11222223444667899999999998
Q ss_pred hHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCc-EEEEeeCCCCCCCCC-HHHHHHhhCCCccccC
Q 029453 77 ARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVP-FLILGNKIDIPYAAS-EDELRYHMGLTNFTTG 154 (193)
Q Consensus 77 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-viiv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~ 154 (193)
+.......+..+|++++|+|+.++- ......+..++.. .++| +++++||+|+..... .+.+.+++.... ...
T Consensus 88 ~~~~~~~~~~~~D~~ilVvda~~g~--~~qt~~~~~~~~~---~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l-~~~ 161 (409)
T CHL00071 88 YVKNMITGAAQMDGAILVVSAADGP--MPQTKEHILLAKQ---VGVPNIVVFLNKEDQVDDEELLELVELEVRELL-SKY 161 (409)
T ss_pred HHHHHHHHHHhCCEEEEEEECCCCC--cHHHHHHHHHHHH---cCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHH-HHh
Confidence 8777777788999999999998652 2333223333332 3678 778999999974222 122222222111 100
Q ss_pred CCcccCCCCCCccEEEEEEeeecCCC
Q 029453 155 KGNVNLDNTNVRPLEVFMCSIVRKMG 180 (193)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~Sa~~~~g 180 (193)
. . .....+++++||.+|.+
T Consensus 162 ~----~---~~~~~~ii~~Sa~~g~n 180 (409)
T CHL00071 162 D----F---PGDDIPIVSGSALLALE 180 (409)
T ss_pred C----C---CCCcceEEEcchhhccc
Confidence 0 0 00236899999998864
No 227
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.77 E-value=2.6e-17 Score=122.60 Aligned_cols=123 Identities=17% Similarity=0.101 Sum_probs=85.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCc--c---cc----------------CCCCCcceeEEEeCCeEEEEEEcCChhhhHHh
Q 029453 22 KILFLGLDNSGKTTLLHMLKDERL--V---QH----------------QPTQYPTSEELSIGKIKFKAFDLGGHQMARRV 80 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~~~--~---~~----------------~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~ 80 (193)
+|+++|++|+|||||++++....- . .. ..|.......+.+++..+.++||||+..+...
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~ 80 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE 80 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence 589999999999999999863110 0 00 01223344567788999999999999988888
Q ss_pred HHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCC---CHHHHHHhhCCC
Q 029453 81 WKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAA---SEDELRYHMGLT 149 (193)
Q Consensus 81 ~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~---~~~~~~~~~~~~ 149 (193)
+...++.+|++++|+|+.+...- .....+..+ .. .++|+++++||+|+.+.. ..+++...++..
T Consensus 81 ~~~~l~~aD~ailVVDa~~g~~~-~t~~~~~~~-~~---~~~p~ivviNK~D~~~a~~~~~~~~l~~~l~~~ 147 (270)
T cd01886 81 VERSLRVLDGAVAVFDAVAGVEP-QTETVWRQA-DR---YNVPRIAFVNKMDRTGADFFRVVEQIREKLGAN 147 (270)
T ss_pred HHHHHHHcCEEEEEEECCCCCCH-HHHHHHHHH-HH---cCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCC
Confidence 88889999999999999875321 122333333 22 478999999999987432 234455555544
No 228
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.76 E-value=3.7e-17 Score=121.65 Aligned_cols=122 Identities=18% Similarity=0.189 Sum_probs=84.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCc--cc---c------CC--------------CCCcceeEEEeCCeEEEEEEcCChhh
Q 029453 22 KILFLGLDNSGKTTLLHMLKDERL--VQ---H------QP--------------TQYPTSEELSIGKIKFKAFDLGGHQM 76 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~~~--~~---~------~~--------------t~~~~~~~~~~~~~~~~~~D~~g~~~ 76 (193)
+|+++|++|+|||||++++....- .. . .. +.......+.+.+..+.+|||||+.+
T Consensus 4 ni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~d 83 (267)
T cd04169 4 TFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHED 83 (267)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCchH
Confidence 699999999999999999864211 00 0 00 11122346778889999999999998
Q ss_pred hHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC---HHHHHHhhCC
Q 029453 77 ARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAAS---EDELRYHMGL 148 (193)
Q Consensus 77 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~---~~~~~~~~~~ 148 (193)
+.......+..+|++++|+|+++.... ....++. .... .++|+++++||+|+..... .++++..++.
T Consensus 84 f~~~~~~~l~~aD~~IlVvda~~g~~~-~~~~i~~-~~~~---~~~P~iivvNK~D~~~a~~~~~~~~l~~~l~~ 153 (267)
T cd04169 84 FSEDTYRTLTAVDSAVMVIDAAKGVEP-QTRKLFE-VCRL---RGIPIITFINKLDREGRDPLELLDEIEEELGI 153 (267)
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCccH-HHHHHHH-HHHh---cCCCEEEEEECCccCCCCHHHHHHHHHHHHCC
Confidence 877667778899999999999875321 2223332 2222 4789999999999875433 3456665553
No 229
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.76 E-value=1.1e-17 Score=131.61 Aligned_cols=149 Identities=20% Similarity=0.132 Sum_probs=94.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcc--c------------c----------------------CCCCCcceeEEEeCCe
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLV--Q------------H----------------------QPTQYPTSEELSIGKI 64 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~--~------------~----------------------~~t~~~~~~~~~~~~~ 64 (193)
++|+++|++++|||||++++....-. . . ..|.......+..++.
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 48999999999999999998532210 0 0 0022333445556778
Q ss_pred EEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC--HHHH
Q 029453 65 KFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAAS--EDEL 142 (193)
Q Consensus 65 ~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~--~~~~ 142 (193)
.+.++|||||++|.......+..+|++++|+|+..+- .........++... ...++++++||+|+..... .++.
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~--~~qt~~~~~~~~~~--~~~~iivviNK~D~~~~~~~~~~~i 156 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGV--LEQTRRHSYIASLL--GIRHVVLAVNKMDLVDYDEEVFENI 156 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCC--ccccHHHHHHHHHc--CCCcEEEEEEecccccchHHHHHHH
Confidence 9999999999998776677788999999999998652 22222222222221 2346899999999964221 1112
Q ss_pred HHhhCCCccccCCCcccCCCCCCccEEEEEEeeecCCChhH
Q 029453 143 RYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGE 183 (193)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 183 (193)
...+.... .. ......+++++||++|.|+++
T Consensus 157 ~~~~~~~~-~~---------~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 157 KKDYLAFA-EQ---------LGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred HHHHHHHH-HH---------cCCCCccEEEeecccCCCCcc
Confidence 22221100 00 001235799999999999986
No 230
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.75 E-value=1e-17 Score=110.73 Aligned_cols=161 Identities=17% Similarity=0.243 Sum_probs=116.9
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCcccc-CCCCCcc--eeEEEe--CCeEEEEEEcCChhhhHHhHHhhhccCCEE
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQH-QPTQYPT--SEELSI--GKIKFKAFDLGGHQMARRVWKDYYAKVDAV 91 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~-~~t~~~~--~~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~i 91 (193)
..-++||+++|.+..|||||+-.+.++.+... ..+.+.+ ..++.. ....+.+||.+|++++..+.+-...++-++
T Consensus 17 n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaI 96 (205)
T KOG1673|consen 17 NLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAI 96 (205)
T ss_pred cceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEE
Confidence 44678999999999999999999999888632 2233332 234444 446899999999999999888888899999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCH---HHHHHhhCCCccccCCCcccCCCCCCccE
Q 029453 92 VYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASE---DELRYHMGLTNFTTGKGNVNLDNTNVRPL 168 (193)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (193)
++++|.+.++++.....|++.... .+..-+|+ +|+||.|+.-.-++ +++..+-. .+..+ -+.
T Consensus 97 lFmFDLt~r~TLnSi~~WY~QAr~-~NktAiPi-lvGTKyD~fi~lp~e~Q~~I~~qar--~YAk~-----------mnA 161 (205)
T KOG1673|consen 97 LFMFDLTRRSTLNSIKEWYRQARG-LNKTAIPI-LVGTKYDLFIDLPPELQETISRQAR--KYAKV-----------MNA 161 (205)
T ss_pred EEEEecCchHHHHHHHHHHHHHhc-cCCccceE-EeccchHhhhcCCHHHHHHHHHHHH--HHHHH-----------hCC
Confidence 999999999999999999998854 33344664 56999997622222 22211110 10111 124
Q ss_pred EEEEEeeecCCChhHHHHhhhhhc
Q 029453 169 EVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 169 ~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
..+.||+....|+.++|..+..++
T Consensus 162 sL~F~Sts~sINv~KIFK~vlAkl 185 (205)
T KOG1673|consen 162 SLFFCSTSHSINVQKIFKIVLAKL 185 (205)
T ss_pred cEEEeeccccccHHHHHHHHHHHH
Confidence 679999999999999999876543
No 231
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.75 E-value=3.9e-17 Score=128.12 Aligned_cols=116 Identities=21% Similarity=0.203 Sum_probs=78.1
Q ss_pred CCCCcccEEEEEcCCCCCHHHHHHHHhcCCc------------cc-------cCCCCCcceeEEEeCCeEEEEEEcCChh
Q 029453 15 GLWQKEAKILFLGLDNSGKTTLLHMLKDERL------------VQ-------HQPTQYPTSEELSIGKIKFKAFDLGGHQ 75 (193)
Q Consensus 15 ~~~~~~~~i~i~G~~~~GKssl~~~l~~~~~------------~~-------~~~t~~~~~~~~~~~~~~~~~~D~~g~~ 75 (193)
...++.++|+++|+.++|||||+++|.+... .. ...|.......+..++..+.+||||||+
T Consensus 7 ~~~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~ 86 (394)
T TIGR00485 7 ERTKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHA 86 (394)
T ss_pred cCCCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchH
Confidence 3457889999999999999999999973210 00 0112222233344456789999999999
Q ss_pred hhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEE-EEeeCCCCCC
Q 029453 76 MARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFL-ILGNKIDIPY 135 (193)
Q Consensus 76 ~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pvi-iv~nK~Dl~~ 135 (193)
+|..........+|++++|+|+.++- ......+..++.. .++|.+ +++||+|+.+
T Consensus 87 ~f~~~~~~~~~~~D~~ilVvda~~g~--~~qt~e~l~~~~~---~gi~~iIvvvNK~Dl~~ 142 (394)
T TIGR00485 87 DYVKNMITGAAQMDGAILVVSATDGP--MPQTREHILLARQ---VGVPYIVVFLNKCDMVD 142 (394)
T ss_pred HHHHHHHHHHhhCCEEEEEEECCCCC--cHHHHHHHHHHHH---cCCCEEEEEEEecccCC
Confidence 98877777778899999999998742 1222222222222 256655 6899999864
No 232
>PLN03126 Elongation factor Tu; Provisional
Probab=99.75 E-value=6.4e-17 Score=128.80 Aligned_cols=153 Identities=15% Similarity=0.111 Sum_probs=96.3
Q ss_pred hCCCCcccEEEEEcCCCCCHHHHHHHHhcCCcc---------------ccCCCCC----cceeEEEeCCeEEEEEEcCCh
Q 029453 14 LGLWQKEAKILFLGLDNSGKTTLLHMLKDERLV---------------QHQPTQY----PTSEELSIGKIKFKAFDLGGH 74 (193)
Q Consensus 14 ~~~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~---------------~~~~t~~----~~~~~~~~~~~~~~~~D~~g~ 74 (193)
....++.++|+++|++++|||||+++|.+.... ..+...+ .....+..++..+.++|+|||
T Consensus 75 ~~~~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh 154 (478)
T PLN03126 75 FERKKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGH 154 (478)
T ss_pred hhccCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCH
Confidence 334667889999999999999999999852110 0011112 122334556788999999999
Q ss_pred hhhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCc-EEEEeeCCCCCCCCC-HHHHHHhhCCCccc
Q 029453 75 QMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVP-FLILGNKIDIPYAAS-EDELRYHMGLTNFT 152 (193)
Q Consensus 75 ~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-viiv~nK~Dl~~~~~-~~~~~~~~~~~~~~ 152 (193)
++|.......+..+|++++|+|+.+.. ......+..++.. .++| +++++||+|+.+... .+.+.+++.... .
T Consensus 155 ~~f~~~~~~g~~~aD~ailVVda~~G~--~~qt~e~~~~~~~---~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l-~ 228 (478)
T PLN03126 155 ADYVKNMITGAAQMDGAILVVSGADGP--MPQTKEHILLAKQ---VGVPNMVVFLNKQDQVDDEELLELVELEVRELL-S 228 (478)
T ss_pred HHHHHHHHHHHhhCCEEEEEEECCCCC--cHHHHHHHHHHHH---cCCCeEEEEEecccccCHHHHHHHHHHHHHHHH-H
Confidence 999887777788999999999998753 2222222233333 3677 778999999964221 121222221111 0
Q ss_pred cCCCcccCCCCCCccEEEEEEeeecCC
Q 029453 153 TGKGNVNLDNTNVRPLEVFMCSIVRKM 179 (193)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 179 (193)
.. .......+++++|+.+|.
T Consensus 229 ~~-------g~~~~~~~~vp~Sa~~g~ 248 (478)
T PLN03126 229 SY-------EFPGDDIPIISGSALLAL 248 (478)
T ss_pred hc-------CCCcCcceEEEEEccccc
Confidence 00 000134789999998875
No 233
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.75 E-value=2.2e-17 Score=131.80 Aligned_cols=156 Identities=18% Similarity=0.099 Sum_probs=97.6
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHHhcCCcc--c------------cCC----------------------CCCcceeEE
Q 029453 16 LWQKEAKILFLGLDNSGKTTLLHMLKDERLV--Q------------HQP----------------------TQYPTSEEL 59 (193)
Q Consensus 16 ~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~--~------------~~~----------------------t~~~~~~~~ 59 (193)
..+..++|+++|++++|||||+++|....-. . ... |.......+
T Consensus 23 ~~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~ 102 (474)
T PRK05124 23 QHKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYF 102 (474)
T ss_pred cccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEe
Confidence 4567899999999999999999998643211 0 000 112223334
Q ss_pred EeCCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC-
Q 029453 60 SIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAAS- 138 (193)
Q Consensus 60 ~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~- 138 (193)
..++..+.++|||||+.+.......+..+|++++|+|+.++- .........+.... ...|+++++||+|+.....
T Consensus 103 ~~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~--~~qt~~~~~l~~~l--g~~~iIvvvNKiD~~~~~~~ 178 (474)
T PRK05124 103 STEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGV--LDQTRRHSFIATLL--GIKHLVVAVNKMDLVDYSEE 178 (474)
T ss_pred ccCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCc--cccchHHHHHHHHh--CCCceEEEEEeeccccchhH
Confidence 556788999999999988766666678999999999998652 12111111222221 1257899999999973221
Q ss_pred -HHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeeecCCChhHH
Q 029453 139 -EDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEG 184 (193)
Q Consensus 139 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~ 184 (193)
..++...+.... .. ..+....+++++||++|.|+++.
T Consensus 179 ~~~~i~~~l~~~~-~~--------~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 179 VFERIREDYLTFA-EQ--------LPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred HHHHHHHHHHHHH-Hh--------cCCCCCceEEEEEeecCCCcccc
Confidence 222333221100 00 00012468999999999999764
No 234
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.75 E-value=8e-17 Score=106.26 Aligned_cols=160 Identities=19% Similarity=0.266 Sum_probs=115.0
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCccc---cCCCCCccee-EEE---eCCeEEEEEEcCChhhh-HHhHHhhhccCC
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQ---HQPTQYPTSE-ELS---IGKIKFKAFDLGGHQMA-RRVWKDYYAKVD 89 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~-~~~---~~~~~~~~~D~~g~~~~-~~~~~~~~~~~d 89 (193)
.+.-||++.|..++|||++++++..+.-.. ..+|...... .++ .-.-.+.++||.|.... ..+..+|++-+|
T Consensus 7 Gk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aD 86 (198)
T KOG3883|consen 7 GKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFAD 86 (198)
T ss_pred CcceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCc
Confidence 356799999999999999999998766442 3344433321 111 11246899999997665 667778999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEE
Q 029453 90 AVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLE 169 (193)
Q Consensus 90 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (193)
++++|++..++++|+.....-..+-+......+|+++++||+|+.+....+--........ +.+.
T Consensus 87 afVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~r---------------Ekvk 151 (198)
T KOG3883|consen 87 AFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAKR---------------EKVK 151 (198)
T ss_pred eEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHHhh---------------hhee
Confidence 9999999999999988776666665455557799999999999963333322222222222 4467
Q ss_pred EEEEeeecCCChhHHHHhhhhhc
Q 029453 170 VFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 170 ~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
.+++++.++..+-+-|..+..++
T Consensus 152 l~eVta~dR~sL~epf~~l~~rl 174 (198)
T KOG3883|consen 152 LWEVTAMDRPSLYEPFTYLASRL 174 (198)
T ss_pred EEEEEeccchhhhhHHHHHHHhc
Confidence 88999999999999988887654
No 235
>PRK00049 elongation factor Tu; Reviewed
Probab=99.75 E-value=5.2e-17 Score=127.31 Aligned_cols=163 Identities=17% Similarity=0.133 Sum_probs=101.7
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHHhcCCcc------------c---c--CC--CCCcceeEEEeCCeEEEEEEcCChhh
Q 029453 16 LWQKEAKILFLGLDNSGKTTLLHMLKDERLV------------Q---H--QP--TQYPTSEELSIGKIKFKAFDLGGHQM 76 (193)
Q Consensus 16 ~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~------------~---~--~~--t~~~~~~~~~~~~~~~~~~D~~g~~~ 76 (193)
..++.++|+++|++++|||||+++|.+.... . . .. |.......+..++..+.++||||+.+
T Consensus 8 ~~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~ 87 (396)
T PRK00049 8 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHAD 87 (396)
T ss_pred CCCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHH
Confidence 4578899999999999999999999863110 0 0 00 22222223334567899999999998
Q ss_pred hHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEE-EEeeCCCCCCCCC-HHHHHHhhCCCccccC
Q 029453 77 ARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFL-ILGNKIDIPYAAS-EDELRYHMGLTNFTTG 154 (193)
Q Consensus 77 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pvi-iv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~ 154 (193)
+.......+..+|++++|+|+.++- ......+..++.. .++|.+ +++||+|+..... .+.+..++.... ...
T Consensus 88 f~~~~~~~~~~aD~~llVVDa~~g~--~~qt~~~~~~~~~---~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l-~~~ 161 (396)
T PRK00049 88 YVKNMITGAAQMDGAILVVSAADGP--MPQTREHILLARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELL-SKY 161 (396)
T ss_pred HHHHHHhhhccCCEEEEEEECCCCC--chHHHHHHHHHHH---cCCCEEEEEEeecCCcchHHHHHHHHHHHHHHH-Hhc
Confidence 8777777788999999999998752 2222222233332 367876 5899999964211 111222221111 000
Q ss_pred CCcccCCCCCCccEEEEEEeeecCC----------ChhHHHHhhhhh
Q 029453 155 KGNVNLDNTNVRPLEVFMCSIVRKM----------GYGEGFKWLSQY 191 (193)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~Sa~~~~----------gi~~~~~~i~~~ 191 (193)
.......+++++||.++. ++..+++.|.+.
T Consensus 162 -------~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~ 201 (396)
T PRK00049 162 -------DFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSY 201 (396)
T ss_pred -------CCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhc
Confidence 000124688999999875 566777777653
No 236
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.74 E-value=7.1e-17 Score=130.04 Aligned_cols=126 Identities=18% Similarity=0.206 Sum_probs=86.2
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhc--CCcc---cc----------------CC----CCCcceeEEEeCCeEEEEEEcC
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKD--ERLV---QH----------------QP----TQYPTSEELSIGKIKFKAFDLG 72 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~--~~~~---~~----------------~~----t~~~~~~~~~~~~~~~~~~D~~ 72 (193)
.+.-+|+++|++++|||||++++.. +... .. +. +.......+.+++..+.+||||
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTP 87 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTP 87 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECC
Confidence 3456999999999999999999863 1110 00 00 1112234567788999999999
Q ss_pred ChhhhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC---HHHHHHhhCC
Q 029453 73 GHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAAS---EDELRYHMGL 148 (193)
Q Consensus 73 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~---~~~~~~~~~~ 148 (193)
|+..+......++..+|++++|+|+++.-.. ....++... .. .++|+++++||+|+..... .+++...++.
T Consensus 88 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~-~~---~~iPiiv~iNK~D~~~a~~~~~l~~i~~~l~~ 161 (526)
T PRK00741 88 GHEDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRKLMEVC-RL---RDTPIFTFINKLDRDGREPLELLDEIEEVLGI 161 (526)
T ss_pred CchhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHHHHHHH-Hh---cCCCEEEEEECCcccccCHHHHHHHHHHHhCC
Confidence 9998887777788999999999999875211 222333222 22 5899999999999874433 2456555554
No 237
>PLN03127 Elongation factor Tu; Provisional
Probab=99.74 E-value=1.4e-16 Score=126.20 Aligned_cols=165 Identities=15% Similarity=0.115 Sum_probs=101.2
Q ss_pred hCCCCcccEEEEEcCCCCCHHHHHHHHhcC------Ccc-c--------c----CCCCCcceeEEEeCCeEEEEEEcCCh
Q 029453 14 LGLWQKEAKILFLGLDNSGKTTLLHMLKDE------RLV-Q--------H----QPTQYPTSEELSIGKIKFKAFDLGGH 74 (193)
Q Consensus 14 ~~~~~~~~~i~i~G~~~~GKssl~~~l~~~------~~~-~--------~----~~t~~~~~~~~~~~~~~~~~~D~~g~ 74 (193)
....++.++|+++|++++|||||+++|.+. ... . . ..|.......++.++..+.++|||||
T Consensus 55 ~~~~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh 134 (447)
T PLN03127 55 FTRTKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGH 134 (447)
T ss_pred hhcCCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCc
Confidence 444668899999999999999999999622 100 0 0 01223333344456678999999999
Q ss_pred hhhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCc-EEEEeeCCCCCCCCCH-HHHHHhhCCCccc
Q 029453 75 QMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVP-FLILGNKIDIPYAASE-DELRYHMGLTNFT 152 (193)
Q Consensus 75 ~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-viiv~nK~Dl~~~~~~-~~~~~~~~~~~~~ 152 (193)
.++..........+|++++|+|+.++. ......+..++.. .++| +++++||+|+...... +.+..++.... .
T Consensus 135 ~~f~~~~~~g~~~aD~allVVda~~g~--~~qt~e~l~~~~~---~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l-~ 208 (447)
T PLN03127 135 ADYVKNMITGAAQMDGGILVVSAPDGP--MPQTKEHILLARQ---VGVPSLVVFLNKVDVVDDEELLELVEMELRELL-S 208 (447)
T ss_pred cchHHHHHHHHhhCCEEEEEEECCCCC--chhHHHHHHHHHH---cCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHH-H
Confidence 988776666677899999999998752 2323333333333 3678 5788999999642211 11221211110 0
Q ss_pred cCCCcccCCCCCCccEEEEEEeee---cCCC-------hhHHHHhhhhh
Q 029453 153 TGKGNVNLDNTNVRPLEVFMCSIV---RKMG-------YGEGFKWLSQY 191 (193)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~Sa~---~~~g-------i~~~~~~i~~~ 191 (193)
.. .......+++++|+. +|.| +.++++.|.+.
T Consensus 209 ~~-------~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~ 250 (447)
T PLN03127 209 FY-------KFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEY 250 (447)
T ss_pred Hh-------CCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHh
Confidence 00 000124678888765 5555 67888887654
No 238
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.74 E-value=4.2e-17 Score=134.81 Aligned_cols=154 Identities=17% Similarity=0.076 Sum_probs=97.0
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHHhcCCcccc--------------C----------------------CCCCcceeEE
Q 029453 16 LWQKEAKILFLGLDNSGKTTLLHMLKDERLVQH--------------Q----------------------PTQYPTSEEL 59 (193)
Q Consensus 16 ~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~--------------~----------------------~t~~~~~~~~ 59 (193)
.....++|+++|++++|||||++++....-... . .|.......+
T Consensus 20 ~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~ 99 (632)
T PRK05506 20 ERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYF 99 (632)
T ss_pred cCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEE
Confidence 355678999999999999999999875331100 0 0222233355
Q ss_pred EeCCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC-
Q 029453 60 SIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAAS- 138 (193)
Q Consensus 60 ~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~- 138 (193)
..++..+.++||||++.+.......+..+|++++|+|+.++. .........++... ...|+++++||+|+.....
T Consensus 100 ~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~--~~~t~e~~~~~~~~--~~~~iivvvNK~D~~~~~~~ 175 (632)
T PRK05506 100 ATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGV--LTQTRRHSFIASLL--GIRHVVLAVNKMDLVDYDQE 175 (632)
T ss_pred ccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCc--cccCHHHHHHHHHh--CCCeEEEEEEecccccchhH
Confidence 567788999999999988766666788999999999997652 22111122222221 2367899999999963111
Q ss_pred -HHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeeecCCChhH
Q 029453 139 -EDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGE 183 (193)
Q Consensus 139 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 183 (193)
.+++..++.... .. ......+++++||++|.|+++
T Consensus 176 ~~~~i~~~i~~~~-~~---------~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 176 VFDEIVADYRAFA-AK---------LGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred HHHHHHHHHHHHH-HH---------cCCCCccEEEEecccCCCccc
Confidence 122222221100 00 001235789999999999974
No 239
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.74 E-value=4.8e-17 Score=128.94 Aligned_cols=156 Identities=17% Similarity=0.101 Sum_probs=99.2
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCC--cc-------------------------cc---C----CCCCcceeEEEeC
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDER--LV-------------------------QH---Q----PTQYPTSEELSIG 62 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~--~~-------------------------~~---~----~t~~~~~~~~~~~ 62 (193)
.++.++|+++|+.++|||||+.++.... .. .. + .|.......+.++
T Consensus 4 ~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~ 83 (446)
T PTZ00141 4 EKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETP 83 (446)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccC
Confidence 4678899999999999999999986411 00 00 0 0222233445667
Q ss_pred CeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCChhh---H--HHHHHHHHHHHhCCCCCCCc-EEEEeeCCCCCCC
Q 029453 63 KIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKER---F--SESKRELDALLSDEALADVP-FLILGNKIDIPYA 136 (193)
Q Consensus 63 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~---~--~~~~~~~~~~~~~~~~~~~p-viiv~nK~Dl~~~ 136 (193)
+..+.++|+|||.+|.......+..+|++++|+|+.++.. + +........++.. .++| +++++||+|....
T Consensus 84 ~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~---~gi~~iiv~vNKmD~~~~ 160 (446)
T PTZ00141 84 KYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFT---LGVKQMIVCINKMDDKTV 160 (446)
T ss_pred CeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHH---cCCCeEEEEEEccccccc
Confidence 8899999999999998888888899999999999987520 0 1122222222222 3655 6789999995421
Q ss_pred ----CCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeeecCCChhH
Q 029453 137 ----ASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGE 183 (193)
Q Consensus 137 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 183 (193)
...+++.+++....-...- ....++++++|+.+|.|+.+
T Consensus 161 ~~~~~~~~~i~~~i~~~l~~~g~--------~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 161 NYSQERYDEIKKEVSAYLKKVGY--------NPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred hhhHHHHHHHHHHHHHHHHhcCC--------CcccceEEEeecccCCCccc
Confidence 1222233333222100000 01347899999999999964
No 240
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.73 E-value=1e-16 Score=119.82 Aligned_cols=110 Identities=21% Similarity=0.168 Sum_probs=79.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCcc--c---c----------------CCCCCcceeEEEeCCeEEEEEEcCChhhhHHh
Q 029453 22 KILFLGLDNSGKTTLLHMLKDERLV--Q---H----------------QPTQYPTSEELSIGKIKFKAFDLGGHQMARRV 80 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~~~~--~---~----------------~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~ 80 (193)
+|+++|++|||||||++++...... . . ..+.......+.+++..+.+|||||+..+...
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~ 80 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE 80 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence 5899999999999999998643211 0 0 11223334566778899999999999988777
Q ss_pred HHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC
Q 029453 81 WKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYA 136 (193)
Q Consensus 81 ~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~ 136 (193)
...++..+|++++|+|+++...... ...+..+. . .++|.++++||+|+...
T Consensus 81 ~~~~l~~aD~~i~Vvd~~~g~~~~~-~~~~~~~~-~---~~~p~iivvNK~D~~~~ 131 (268)
T cd04170 81 TRAALRAADAALVVVSAQSGVEVGT-EKLWEFAD-E---AGIPRIIFINKMDRERA 131 (268)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHH-HHHHHHHH-H---cCCCEEEEEECCccCCC
Confidence 7888899999999999987643322 22233222 2 47899999999998754
No 241
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.73 E-value=6.2e-17 Score=117.09 Aligned_cols=108 Identities=21% Similarity=0.254 Sum_probs=75.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCcccc------------------CC----CCCcceeEEEe-----CCeEEEEEEcCCh
Q 029453 22 KILFLGLDNSGKTTLLHMLKDERLVQH------------------QP----TQYPTSEELSI-----GKIKFKAFDLGGH 74 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~~~~~~------------------~~----t~~~~~~~~~~-----~~~~~~~~D~~g~ 74 (193)
+|+++|++|+|||||++++........ +. +.......+.+ ....+.+|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 589999999999999999976432211 00 11111122222 2378999999999
Q ss_pred hhhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC
Q 029453 75 QMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIP 134 (193)
Q Consensus 75 ~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~ 134 (193)
.++......++..+|++++|+|+++..+.. ...++..... .+.|+++|+||+|+.
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~-~~~~~~~~~~----~~~p~iiviNK~D~~ 136 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSN-TERLIRHAIL----EGLPIVLVINKIDRL 136 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHH-HHHHHHHHHH----cCCCEEEEEECcccC
Confidence 998877788889999999999998765432 2233333322 358999999999985
No 242
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.73 E-value=2.6e-16 Score=103.16 Aligned_cols=103 Identities=25% Similarity=0.423 Sum_probs=71.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccc--c--CCCCCcceeEEEeCCeEEEEEEcCChhh---------hHHhHHhhhccC
Q 029453 22 KILFLGLDNSGKTTLLHMLKDERLVQ--H--QPTQYPTSEELSIGKIKFKAFDLGGHQM---------ARRVWKDYYAKV 88 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~~~~~--~--~~t~~~~~~~~~~~~~~~~~~D~~g~~~---------~~~~~~~~~~~~ 88 (193)
+|+|+|.+|||||||+|.+.+..... . ..|.......+.+++..+.++||||... ........+..+
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 80 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQISKS 80 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCTE
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHHC
Confidence 68999999999999999999864332 2 2244454566678889999999999421 111223334789
Q ss_pred CEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeC
Q 029453 89 DAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNK 130 (193)
Q Consensus 89 d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK 130 (193)
|++++|+|++++.. ......+..+ + .+.|+++|+||
T Consensus 81 d~ii~vv~~~~~~~-~~~~~~~~~l-~----~~~~~i~v~NK 116 (116)
T PF01926_consen 81 DLIIYVVDASNPIT-EDDKNILREL-K----NKKPIILVLNK 116 (116)
T ss_dssp SEEEEEEETTSHSH-HHHHHHHHHH-H----TTSEEEEEEES
T ss_pred CEEEEEEECCCCCC-HHHHHHHHHH-h----cCCCEEEEEcC
Confidence 99999999877421 2223333333 2 58999999998
No 243
>PRK13351 elongation factor G; Reviewed
Probab=99.73 E-value=1.9e-16 Score=132.22 Aligned_cols=114 Identities=19% Similarity=0.075 Sum_probs=85.0
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCcc---------------------ccCCCCCcceeEEEeCCeEEEEEEcCChhh
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLV---------------------QHQPTQYPTSEELSIGKIKFKAFDLGGHQM 76 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~---------------------~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~ 76 (193)
++-.+|+++|+.|+|||||++++....-. ....|.......+.+++..+.+|||||+.+
T Consensus 6 ~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~d 85 (687)
T PRK13351 6 MQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHID 85 (687)
T ss_pred ccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHH
Confidence 34569999999999999999999742210 011133344456778889999999999999
Q ss_pred hHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC
Q 029453 77 ARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYA 136 (193)
Q Consensus 77 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~ 136 (193)
+......+++.+|++++|+|+++....+.. ..+..+. . .++|+++++||+|+...
T Consensus 86 f~~~~~~~l~~aD~~ilVvd~~~~~~~~~~-~~~~~~~-~---~~~p~iiviNK~D~~~~ 140 (687)
T PRK13351 86 FTGEVERSLRVLDGAVVVFDAVTGVQPQTE-TVWRQAD-R---YGIPRLIFINKMDRVGA 140 (687)
T ss_pred HHHHHHHHHHhCCEEEEEEeCCCCCCHHHH-HHHHHHH-h---cCCCEEEEEECCCCCCC
Confidence 888888889999999999999886544433 2333332 2 47899999999998743
No 244
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.73 E-value=3e-17 Score=117.31 Aligned_cols=160 Identities=13% Similarity=0.145 Sum_probs=93.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCc-----ceeEEEeC-CeEEEEEEcCChhhhHH-----hHHhhhcc
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYP-----TSEELSIG-KIKFKAFDLGGHQMARR-----VWKDYYAK 87 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~-----~~~~~~~~-~~~~~~~D~~g~~~~~~-----~~~~~~~~ 87 (193)
+++|+++|.+|||||||+|.+.+..... ...+.+. ....+... ...+.+|||||...... .....+..
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~ 80 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPDDYLEEMKFSE 80 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHHHHHHHhCccC
Confidence 4689999999999999999998855432 1111111 11111111 24689999999643211 11222567
Q ss_pred CCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC-CC--------CHHHHHHhhCCCccccCCCcc
Q 029453 88 VDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY-AA--------SEDELRYHMGLTNFTTGKGNV 158 (193)
Q Consensus 88 ~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~-~~--------~~~~~~~~~~~~~~~~~~~~~ 158 (193)
+|++++|.+. ++......+...+.. .+.|+++|+||+|+.. .. ..+++...+.....+...
T Consensus 81 ~d~~l~v~~~----~~~~~d~~~~~~l~~---~~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~--- 150 (197)
T cd04104 81 YDFFIIISST----RFSSNDVKLAKAIQC---MGKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQ--- 150 (197)
T ss_pred cCEEEEEeCC----CCCHHHHHHHHHHHH---hCCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHH---
Confidence 8988887543 244444444444433 2689999999999852 11 122333222222211100
Q ss_pred cCCCCCCccEEEEEEeee--cCCChhHHHHhhhhhc
Q 029453 159 NLDNTNVRPLEVFMCSIV--RKMGYGEGFKWLSQYI 192 (193)
Q Consensus 159 ~~~~~~~~~~~~~~~Sa~--~~~gi~~~~~~i~~~l 192 (193)
.......+++.+|+. .+.++..+.+.|...|
T Consensus 151 ---~~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l 183 (197)
T cd04104 151 ---EAGVSEPPVFLVSNFDPSDYDFPKLRETLLKDL 183 (197)
T ss_pred ---HcCCCCCCEEEEeCCChhhcChHHHHHHHHHHh
Confidence 001233589999998 6899999999987654
No 245
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.72 E-value=1.3e-16 Score=126.24 Aligned_cols=163 Identities=20% Similarity=0.103 Sum_probs=102.7
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccccC--C----CCCccee---------------EEEe--------------
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQ--P----TQYPTSE---------------ELSI-------------- 61 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~--~----t~~~~~~---------------~~~~-------------- 61 (193)
.+..++|+++|+...|||||+..|.+....... . |...... ...+
T Consensus 31 ~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (460)
T PTZ00327 31 RQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCG 110 (460)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccc
Confidence 467889999999999999999999864432110 0 1100000 0000
Q ss_pred ----CCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCC
Q 029453 62 ----GKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAA 137 (193)
Q Consensus 62 ----~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~ 137 (193)
-...+.++|+|||+.+..........+|++++|+|+.++. ..........++... .-.|+++|+||+|+....
T Consensus 111 ~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~-~~~qT~ehl~i~~~l--gi~~iIVvlNKiDlv~~~ 187 (460)
T PTZ00327 111 HKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESC-PQPQTSEHLAAVEIM--KLKHIIILQNKIDLVKEA 187 (460)
T ss_pred ccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCc-cchhhHHHHHHHHHc--CCCcEEEEEecccccCHH
Confidence 0246889999999999887777888999999999998741 111111222222221 235689999999997432
Q ss_pred CHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 138 SEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
..++...++.... .. ......+++++||++|.|++++++.|.+.+
T Consensus 188 ~~~~~~~ei~~~l-~~---------~~~~~~~iipVSA~~G~nI~~Ll~~L~~~l 232 (460)
T PTZ00327 188 QAQDQYEEIRNFV-KG---------TIADNAPIIPISAQLKYNIDVVLEYICTQI 232 (460)
T ss_pred HHHHHHHHHHHHH-Hh---------hccCCCeEEEeeCCCCCCHHHHHHHHHhhC
Confidence 2222222221110 00 011346899999999999999999998543
No 246
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.72 E-value=7.8e-17 Score=125.89 Aligned_cols=152 Identities=17% Similarity=0.135 Sum_probs=111.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCcc--c------------cCC----CCCcceeEEEeCC---eEEEEEEcCChhhhHHh
Q 029453 22 KILFLGLDNSGKTTLLHMLKDERLV--Q------------HQP----TQYPTSEELSIGK---IKFKAFDLGGHQMARRV 80 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~~~~--~------------~~~----t~~~~~~~~~~~~---~~~~~~D~~g~~~~~~~ 80 (193)
+++|+.+..-|||||..++..-.-. . .+. |...+...+.+.+ ..+.++|||||-.|...
T Consensus 62 NfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDFs~E 141 (650)
T KOG0462|consen 62 NFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDFSGE 141 (650)
T ss_pred ceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCcccccce
Confidence 7899999999999999998632211 1 011 2233344455555 88999999999999887
Q ss_pred HHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccC
Q 029453 81 WKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNL 160 (193)
Q Consensus 81 ~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (193)
..+-+.-|+++++|+|++.+-.-+.....+..+- .+..+|.|+||+|++. ..+++.+.+....+.
T Consensus 142 VsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe-----~~L~iIpVlNKIDlp~-adpe~V~~q~~~lF~--------- 206 (650)
T KOG0462|consen 142 VSRSLAACDGALLVVDASQGVQAQTVANFYLAFE-----AGLAIIPVLNKIDLPS-ADPERVENQLFELFD--------- 206 (650)
T ss_pred ehehhhhcCceEEEEEcCcCchHHHHHHHHHHHH-----cCCeEEEeeeccCCCC-CCHHHHHHHHHHHhc---------
Confidence 7777788999999999998754455566666662 4788999999999964 445555444443330
Q ss_pred CCCCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 161 DNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 161 ~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
....+++.+|||+|.|++++++.|++++
T Consensus 207 ----~~~~~~i~vSAK~G~~v~~lL~AII~rV 234 (650)
T KOG0462|consen 207 ----IPPAEVIYVSAKTGLNVEELLEAIIRRV 234 (650)
T ss_pred ----CCccceEEEEeccCccHHHHHHHHHhhC
Confidence 1224899999999999999999999875
No 247
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.72 E-value=1.3e-16 Score=126.49 Aligned_cols=151 Identities=19% Similarity=0.107 Sum_probs=97.5
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCc--c-------------------------cc---CC----CCCcceeEEEeC
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERL--V-------------------------QH---QP----TQYPTSEELSIG 62 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~--~-------------------------~~---~~----t~~~~~~~~~~~ 62 (193)
.++.++|+++|+.++|||||+.+|....- . .. +. |.......+..+
T Consensus 4 ~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~ 83 (447)
T PLN00043 4 EKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT 83 (447)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCC
Confidence 46788999999999999999998853210 0 00 00 112223345556
Q ss_pred CeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCChhhHH------HHHHHHHHHHhCCCCCCC-cEEEEeeCCCCCC
Q 029453 63 KIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFS------ESKRELDALLSDEALADV-PFLILGNKIDIPY 135 (193)
Q Consensus 63 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~------~~~~~~~~~~~~~~~~~~-pviiv~nK~Dl~~ 135 (193)
+..+.++|+|||++|.......+..+|++|+|+|+.+.. ++ ........++.. .++ ++++++||+|+..
T Consensus 84 ~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~-~e~g~~~~~qT~eh~~~~~~---~gi~~iIV~vNKmD~~~ 159 (447)
T PLN00043 84 KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGG-FEAGISKDGQTREHALLAFT---LGVKQMICCCNKMDATT 159 (447)
T ss_pred CEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCc-eecccCCCchHHHHHHHHHH---cCCCcEEEEEEcccCCc
Confidence 789999999999999988888899999999999998742 21 222222222222 356 5788999999862
Q ss_pred -CCC-------HHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeeecCCChhH
Q 029453 136 -AAS-------EDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGE 183 (193)
Q Consensus 136 -~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 183 (193)
... .+++...+...-+ ....++++++||++|.|+.+
T Consensus 160 ~~~~~~~~~~i~~ei~~~l~~~g~------------~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 160 PKYSKARYDEIVKEVSSYLKKVGY------------NPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred hhhhHHHHHHHHHHHHHHHHHcCC------------CcccceEEEEeccccccccc
Confidence 111 1122222221110 01246899999999999853
No 248
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.72 E-value=8.4e-17 Score=119.58 Aligned_cols=156 Identities=21% Similarity=0.273 Sum_probs=106.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCcc-ccCC--CCCcceeEEEe-CCeEEEEEEcCChhhh-------HHhHHhhhccCCE
Q 029453 22 KILFLGLDNSGKTTLLHMLKDERLV-QHQP--TQYPTSEELSI-GKIKFKAFDLGGHQMA-------RRVWKDYYAKVDA 90 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~~~~-~~~~--t~~~~~~~~~~-~~~~~~~~D~~g~~~~-------~~~~~~~~~~~d~ 90 (193)
.|+++|.||+|||||++.++.-+.. ..+| |..|+...++. ....|.+-|.||.-+- ...+..+++++.+
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~v 240 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLRHIERTRV 240 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecCCCcEEEecCcccccccccCCCccHHHHHHHHhhhe
Confidence 5899999999999999999877654 4444 66788777775 4567999999994322 1223455788999
Q ss_pred EEEEEeCCChh---hHHHHHHHHHHHHhC-CCCCCCcEEEEeeCCCCCC-CCCHHHHHHhhCCCccccCCCcccCCCCCC
Q 029453 91 VVYLIDAYDKE---RFSESKRELDALLSD-EALADVPFLILGNKIDIPY-AASEDELRYHMGLTNFTTGKGNVNLDNTNV 165 (193)
Q Consensus 91 ii~v~d~~~~~---~~~~~~~~~~~~~~~-~~~~~~pviiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (193)
+++|+|++..+ ..+.......++-.. ....++|.++|+||+|+.. .+..+++.+.+.... .
T Consensus 241 L~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~--------------~ 306 (369)
T COG0536 241 LLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEAL--------------G 306 (369)
T ss_pred eEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhc--------------C
Confidence 99999998543 233333333333222 3457899999999999753 333344444444332 0
Q ss_pred ccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 166 RPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 166 ~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
+...++ +||.++.|++++...+.+.+
T Consensus 307 ~~~~~~-ISa~t~~g~~~L~~~~~~~l 332 (369)
T COG0536 307 WEVFYL-ISALTREGLDELLRALAELL 332 (369)
T ss_pred CCccee-eehhcccCHHHHHHHHHHHH
Confidence 111222 99999999999998876654
No 249
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.72 E-value=3e-17 Score=111.99 Aligned_cols=155 Identities=19% Similarity=0.349 Sum_probs=123.0
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcceeEEEe----CCeEEEEEEcCChhhhHHhHHhhhccCCEEEE
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPTSEELSI----GKIKFKAFDLGGHQMARRVWKDYYAKVDAVVY 93 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~----~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 93 (193)
.-++++++|..|.||||+.++...+++.. +.+|.+.......+ +.+.+..|||.|++.+......++=...++++
T Consensus 9 ~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAii 88 (216)
T KOG0096|consen 9 LTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAII 88 (216)
T ss_pred ceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeEE
Confidence 46899999999999999999999999884 55677665544433 34889999999999998887777778899999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEE
Q 029453 94 LIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMC 173 (193)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (193)
++|+...-++.....|.+++.+.. .++|+++++||.|....... .+...... ...+.++..
T Consensus 89 mFdVtsr~t~~n~~rwhrd~~rv~--~NiPiv~cGNKvDi~~r~~k---~k~v~~~r--------------kknl~y~~i 149 (216)
T KOG0096|consen 89 MFDVTSRFTYKNVPRWHRDLVRVR--ENIPIVLCGNKVDIKARKVK---AKPVSFHR--------------KKNLQYYEI 149 (216)
T ss_pred EeeeeehhhhhcchHHHHHHHHHh--cCCCeeeeccceeccccccc---cccceeee--------------cccceeEEe
Confidence 999999888899999999998764 46999999999997532211 11111111 245789999
Q ss_pred eeecCCChhHHHHhhhhhc
Q 029453 174 SIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 174 Sa~~~~gi~~~~~~i~~~l 192 (193)
||+.+.|.+.-|-|+...+
T Consensus 150 Saksn~NfekPFl~LarKl 168 (216)
T KOG0096|consen 150 SAKSNYNFERPFLWLARKL 168 (216)
T ss_pred ecccccccccchHHHhhhh
Confidence 9999999999999998754
No 250
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.71 E-value=9.3e-17 Score=116.23 Aligned_cols=162 Identities=16% Similarity=0.253 Sum_probs=97.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccc----cCCCCCcceeEEEe-CCeEEEEEEcCChhhhHH-----hHHhhhccCCEE
Q 029453 22 KILFLGLDNSGKTTLLHMLKDERLVQ----HQPTQYPTSEELSI-GKIKFKAFDLGGHQMARR-----VWKDYYAKVDAV 91 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~~~~~----~~~t~~~~~~~~~~-~~~~~~~~D~~g~~~~~~-----~~~~~~~~~d~i 91 (193)
||+++|+.+|||||+.+.++.+..+. -.+|.......+.. ++..+.+||+||+..+.. .....+++++++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~L 80 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGVL 80 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESEE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCEE
Confidence 79999999999999999999776542 24566666667764 567999999999875433 346678999999
Q ss_pred EEEEeCCChh---hHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccE
Q 029453 92 VYLIDAYDKE---RFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPL 168 (193)
Q Consensus 92 i~v~d~~~~~---~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (193)
|||+|+...+ .+..+...+..+.+. -++..+.+.++|+|+..+...++..+........... ......+
T Consensus 81 IyV~D~qs~~~~~~l~~~~~~i~~l~~~--sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~------~~~~~~~ 152 (232)
T PF04670_consen 81 IYVFDAQSDDYDEDLAYLSDCIEALRQY--SPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELE------DLGIEDI 152 (232)
T ss_dssp EEEEETT-STCHHHHHHHHHHHHHHHHH--STT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHH------HTT-TSE
T ss_pred EEEEEcccccHHHHHHHHHHHHHHHHHh--CCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhh------hccccce
Confidence 9999998433 223333334444332 2689999999999997543333322221111100000 0001247
Q ss_pred EEEEEeeecCCChhHHHHhhhhhc
Q 029453 169 EVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 169 ~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
.++.+|..+ +.+-+.+..|++.|
T Consensus 153 ~~~~TSI~D-~Sly~A~S~Ivq~L 175 (232)
T PF04670_consen 153 TFFLTSIWD-ESLYEAWSKIVQKL 175 (232)
T ss_dssp EEEEE-TTS-THHHHHHHHHHHTT
T ss_pred EEEeccCcC-cHHHHHHHHHHHHH
Confidence 888888887 57888888887754
No 251
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.71 E-value=6.2e-16 Score=124.66 Aligned_cols=126 Identities=17% Similarity=0.196 Sum_probs=84.6
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhc--CCccc---c----------------CCCCC----cceeEEEeCCeEEEEEEcC
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKD--ERLVQ---H----------------QPTQY----PTSEELSIGKIKFKAFDLG 72 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~--~~~~~---~----------------~~t~~----~~~~~~~~~~~~~~~~D~~ 72 (193)
.+.-+|+++|++++|||||++++.. +.... . +...+ .....+.+++..+.+||||
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP 88 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP 88 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence 4567999999999999999999852 11110 0 00111 1234566788999999999
Q ss_pred ChhhhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC---HHHHHHhhCC
Q 029453 73 GHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAAS---EDELRYHMGL 148 (193)
Q Consensus 73 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~---~~~~~~~~~~ 148 (193)
|+..+.......+..+|++++|+|+++. +......+...... .++|+++++||+|+..... .+++...++.
T Consensus 89 G~~df~~~~~~~l~~aD~aIlVvDa~~g--v~~~t~~l~~~~~~---~~~PiivviNKiD~~~~~~~~ll~~i~~~l~~ 162 (527)
T TIGR00503 89 GHEDFSEDTYRTLTAVDNCLMVIDAAKG--VETRTRKLMEVTRL---RDTPIFTFMNKLDRDIRDPLELLDEVENELKI 162 (527)
T ss_pred ChhhHHHHHHHHHHhCCEEEEEEECCCC--CCHHHHHHHHHHHh---cCCCEEEEEECccccCCCHHHHHHHHHHHhCC
Confidence 9998877666778899999999999875 22222222233332 4789999999999863221 2345555543
No 252
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.71 E-value=5.8e-17 Score=127.39 Aligned_cols=161 Identities=17% Similarity=0.241 Sum_probs=119.6
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcc---eeEEEeCCeEEEEEEcCChhhhHHhHHhhhccCCEEEE
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPT---SEELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVY 93 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~---~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 93 (193)
..+.+||+++|..|||||||+-.+...++....|.+-+. ...+.-...+.+++|++..+.-+....+.++++|++.+
T Consensus 6 t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~l 85 (625)
T KOG1707|consen 6 TLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVICL 85 (625)
T ss_pred CccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccCCccCcCcCceEEEecccccchhHHHHHHHhhcCEEEE
Confidence 457899999999999999999999999988655533221 12233345668999998877766777778899999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhCCC--CCCCcEEEEeeCCCCCCCCCH--HH-HHHhhCCCccccCCCcccCCCCCCccE
Q 029453 94 LIDAYDKERFSESKRELDALLSDEA--LADVPFLILGNKIDIPYAASE--DE-LRYHMGLTNFTTGKGNVNLDNTNVRPL 168 (193)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~pviiv~nK~Dl~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (193)
+++.+++++++.....|..++++.. ..+.|||+|+||+|+....+. +. ....+.. +....
T Consensus 86 vyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~---------------f~EiE 150 (625)
T KOG1707|consen 86 VYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIA---------------FAEIE 150 (625)
T ss_pred EEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHH---------------hHHHH
Confidence 9999999999998877777766543 257999999999999743333 22 1111111 11334
Q ss_pred EEEEEeeecCCChhHHHHhhhhhc
Q 029453 169 EVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 169 ~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
..+.|||++-.++.++|..-++++
T Consensus 151 tciecSA~~~~n~~e~fYyaqKaV 174 (625)
T KOG1707|consen 151 TCIECSALTLANVSELFYYAQKAV 174 (625)
T ss_pred HHHhhhhhhhhhhHhhhhhhhhee
Confidence 679999999999999998766543
No 253
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.70 E-value=1.3e-15 Score=115.62 Aligned_cols=76 Identities=20% Similarity=0.274 Sum_probs=53.5
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCcc-ccC--CCCCcceeEEEe------------------------CCeEEEEEEcCCh-
Q 029453 23 ILFLGLDNSGKTTLLHMLKDERLV-QHQ--PTQYPTSEELSI------------------------GKIKFKAFDLGGH- 74 (193)
Q Consensus 23 i~i~G~~~~GKssl~~~l~~~~~~-~~~--~t~~~~~~~~~~------------------------~~~~~~~~D~~g~- 74 (193)
|+++|.||+|||||+|++.+.... ..+ .|..++.....+ ....+.+||+||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 589999999999999999987643 122 244444433222 2257999999997
Q ss_pred ---hhhHHh---HHhhhccCCEEEEEEeCC
Q 029453 75 ---QMARRV---WKDYYAKVDAVVYLIDAY 98 (193)
Q Consensus 75 ---~~~~~~---~~~~~~~~d~ii~v~d~~ 98 (193)
++.... +...++.+|++++|+|++
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~ 110 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDAS 110 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 333333 233578999999999997
No 254
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.70 E-value=1.1e-15 Score=119.59 Aligned_cols=159 Identities=19% Similarity=0.193 Sum_probs=112.8
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccccCC---CCCcceeEEEe-CCeEEEEEEcCChhhhHHhHHhhhccCCEEE
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQP---TQYPTSEELSI-GKIKFKAFDLGGHQMARRVWKDYYAKVDAVV 92 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~---t~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 92 (193)
..+++-|-++|...-|||||+..+-+......+. |.......+.. .+..+++.|||||..|..+..+.-.-.|.++
T Consensus 150 ~~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~G~~iTFLDTPGHaAF~aMRaRGA~vtDIvV 229 (683)
T KOG1145|consen 150 EPRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPSGKSITFLDTPGHAAFSAMRARGANVTDIVV 229 (683)
T ss_pred CCCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCCCCEEEEecCCcHHHHHHHHhccCccccEEE
Confidence 4478899999999999999999998877664432 33333323333 4678999999999999999988888899999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEE
Q 029453 93 YLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFM 172 (193)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (193)
+|+.+.|.- +.+....+ ......+.|+++.+||+|.+. ..++...+++-..-..- ........+++
T Consensus 230 LVVAadDGV----mpQT~EaI-khAk~A~VpiVvAinKiDkp~-a~pekv~~eL~~~gi~~--------E~~GGdVQvip 295 (683)
T KOG1145|consen 230 LVVAADDGV----MPQTLEAI-KHAKSANVPIVVAINKIDKPG-ANPEKVKRELLSQGIVV--------EDLGGDVQVIP 295 (683)
T ss_pred EEEEccCCc----cHhHHHHH-HHHHhcCCCEEEEEeccCCCC-CCHHHHHHHHHHcCccH--------HHcCCceeEEE
Confidence 999998752 11111222 122236899999999999864 44445444443222110 11236689999
Q ss_pred EeeecCCChhHHHHhhh
Q 029453 173 CSIVRKMGYGEGFKWLS 189 (193)
Q Consensus 173 ~Sa~~~~gi~~~~~~i~ 189 (193)
+||++|.|++.+-+.+.
T Consensus 296 iSAl~g~nl~~L~eail 312 (683)
T KOG1145|consen 296 ISALTGENLDLLEEAIL 312 (683)
T ss_pred eecccCCChHHHHHHHH
Confidence 99999999999998874
No 255
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.69 E-value=1.4e-15 Score=110.00 Aligned_cols=108 Identities=20% Similarity=0.171 Sum_probs=76.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCcc--cc-------------CC----CCCcceeEEEeC----------CeEEEEEEcC
Q 029453 22 KILFLGLDNSGKTTLLHMLKDERLV--QH-------------QP----TQYPTSEELSIG----------KIKFKAFDLG 72 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~~~~--~~-------------~~----t~~~~~~~~~~~----------~~~~~~~D~~ 72 (193)
+|+++|+.++|||||+++|....-. .. +. |.......+.+. +..+.+||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 6899999999999999998643211 00 00 111112222332 6789999999
Q ss_pred ChhhhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC
Q 029453 73 GHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIP 134 (193)
Q Consensus 73 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~ 134 (193)
|+..+......++..+|++++|+|+.++...+. ...+..... .++|+++++||+|+.
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t-~~~l~~~~~----~~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQT-ETVLRQALK----ERVKPVLVINKIDRL 138 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECCCcc
Confidence 999999888889999999999999998644332 233333322 368999999999985
No 256
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.69 E-value=4.1e-17 Score=118.09 Aligned_cols=163 Identities=18% Similarity=0.180 Sum_probs=109.6
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccccC---CCCCc-ceeEEEeCCeEEEEEEcCChhh-------hHHhHHhhh
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQ---PTQYP-TSEELSIGKIKFKAFDLGGHQM-------ARRVWKDYY 85 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~---~t~~~-~~~~~~~~~~~~~~~D~~g~~~-------~~~~~~~~~ 85 (193)
.+.+.++.++|..||||||++|.++.+...... .+..+ +.....+....+.+||+||.++ ++.....++
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~D~~~r~~~~d~l 115 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKDKDAEHRQLYRDYL 115 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccccceEEecCCCcccchhhhHHHHHHHHHHh
Confidence 447889999999999999999999976544322 22222 2233445567899999999553 667778888
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCC-CH-----------HHHHHhhCCCcccc
Q 029453 86 AKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAA-SE-----------DELRYHMGLTNFTT 153 (193)
Q Consensus 86 ~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~-~~-----------~~~~~~~~~~~~~~ 153 (193)
.+.|.+++++++.++. ++.....+..+.... .+.|+++++|++|..... .+ .+...+..+.-
T Consensus 116 ~~~DLvL~l~~~~dra-L~~d~~f~~dVi~~~--~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~--- 189 (296)
T COG3596 116 PKLDLVLWLIKADDRA-LGTDEDFLRDVIILG--LDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEAL--- 189 (296)
T ss_pred hhccEEEEeccCCCcc-ccCCHHHHHHHHHhc--cCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHH---
Confidence 9999999999999885 445556666665432 348999999999986321 11 11111000000
Q ss_pred CCCcccCCCCCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 154 GKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
....-...+++..|...+.|++++...++..+
T Consensus 190 -------~~~~q~V~pV~~~~~r~~wgl~~l~~ali~~l 221 (296)
T COG3596 190 -------GRLFQEVKPVVAVSGRLPWGLKELVRALITAL 221 (296)
T ss_pred -------HHHHhhcCCeEEeccccCccHHHHHHHHHHhC
Confidence 00001234788888899999999999988754
No 257
>PRK12739 elongation factor G; Reviewed
Probab=99.68 E-value=2e-15 Score=125.98 Aligned_cols=113 Identities=18% Similarity=0.085 Sum_probs=82.2
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC-----ccc----------------cCCCCCcceeEEEeCCeEEEEEEcCChhhh
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDER-----LVQ----------------HQPTQYPTSEELSIGKIKFKAFDLGGHQMA 77 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~-----~~~----------------~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~ 77 (193)
+-.+|+++|++++|||||++++.... ... ...|.......+.+++..+.++||||+..+
T Consensus 7 ~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~f 86 (691)
T PRK12739 7 KTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVDF 86 (691)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHHH
Confidence 44589999999999999999996321 000 011334445667788999999999999988
Q ss_pred HHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC
Q 029453 78 RRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYA 136 (193)
Q Consensus 78 ~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~ 136 (193)
.......+..+|++++|+|+.++- +.....+...+.. .++|+++++||+|+...
T Consensus 87 ~~e~~~al~~~D~~ilVvDa~~g~--~~qt~~i~~~~~~---~~~p~iv~iNK~D~~~~ 140 (691)
T PRK12739 87 TIEVERSLRVLDGAVAVFDAVSGV--EPQSETVWRQADK---YGVPRIVFVNKMDRIGA 140 (691)
T ss_pred HHHHHHHHHHhCeEEEEEeCCCCC--CHHHHHHHHHHHH---cCCCEEEEEECCCCCCC
Confidence 777888889999999999998763 2222222222222 47899999999999753
No 258
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.68 E-value=2.4e-16 Score=121.49 Aligned_cols=149 Identities=17% Similarity=0.168 Sum_probs=108.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccc--------------cCC----CCCcceeEEEe-----CCeEEEEEEcCChhhhH
Q 029453 22 KILFLGLDNSGKTTLLHMLKDERLVQ--------------HQP----TQYPTSEELSI-----GKIKFKAFDLGGHQMAR 78 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~~~~~--------------~~~----t~~~~~~~~~~-----~~~~~~~~D~~g~~~~~ 78 (193)
+.+++.+-.-|||||..++....-.- .+. |...+...+.+ .++.++++|||||-.|.
T Consensus 11 NFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDFs 90 (603)
T COG0481 11 NFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFS 90 (603)
T ss_pred ceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccceE
Confidence 57888999999999999986332110 011 22223333333 34789999999999987
Q ss_pred HhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC---HHHHHHhhCCCccccCC
Q 029453 79 RVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAAS---EDELRYHMGLTNFTTGK 155 (193)
Q Consensus 79 ~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~---~~~~~~~~~~~~~~~~~ 155 (193)
....+-+..|.++++|+|++.+-.-+.+...+..+- .+.-++-|+||+||+.+.. .+|+++.+++..
T Consensus 91 YEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle-----~~LeIiPViNKIDLP~Adpervk~eIe~~iGid~----- 160 (603)
T COG0481 91 YEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE-----NNLEIIPVLNKIDLPAADPERVKQEIEDIIGIDA----- 160 (603)
T ss_pred EEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHH-----cCcEEEEeeecccCCCCCHHHHHHHHHHHhCCCc-----
Confidence 766666778999999999997644455666666662 4788999999999974333 334666666555
Q ss_pred CcccCCCCCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 156 GNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
.+.+.+|||+|.|++++++.|++++
T Consensus 161 ------------~dav~~SAKtG~gI~~iLe~Iv~~i 185 (603)
T COG0481 161 ------------SDAVLVSAKTGIGIEDVLEAIVEKI 185 (603)
T ss_pred ------------chheeEecccCCCHHHHHHHHHhhC
Confidence 5789999999999999999998865
No 259
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.67 E-value=1.8e-15 Score=108.06 Aligned_cols=161 Identities=8% Similarity=0.004 Sum_probs=97.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcccc-----CCCCCcceeEEEeCCeEEEEEEcCChhhh-------HH----hHHhh
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLVQH-----QPTQYPTSEELSIGKIKFKAFDLGGHQMA-------RR----VWKDY 84 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~~~-----~~t~~~~~~~~~~~~~~~~~~D~~g~~~~-------~~----~~~~~ 84 (193)
.+|+++|.+||||||++|.+++.+.... ..|.........+++..+.++||||.... .. .....
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~ 80 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLS 80 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhc
Confidence 4799999999999999999998875422 23555666677778899999999994322 11 11122
Q ss_pred hccCCEEEEEEeCCChh-hHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCC
Q 029453 85 YAKVDAVVYLIDAYDKE-RFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNT 163 (193)
Q Consensus 85 ~~~~d~ii~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (193)
...+|++++|+++.+.. ........+..++.. ..-.++++++|++|.......+++...... .+.... ..
T Consensus 81 ~~g~~~illVi~~~~~t~~d~~~l~~l~~~fg~--~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~-~l~~l~-----~~- 151 (196)
T cd01852 81 APGPHAFLLVVPLGRFTEEEEQAVETLQELFGE--KVLDHTIVLFTRGDDLEGGTLEDYLENSCE-ALKRLL-----EK- 151 (196)
T ss_pred CCCCEEEEEEEECCCcCHHHHHHHHHHHHHhCh--HhHhcEEEEEECccccCCCcHHHHHHhccH-HHHHHH-----HH-
Confidence 35689999999997621 112233333333221 112689999999998755444443222210 000000 00
Q ss_pred CCccEEEEEE-----eeecCCChhHHHHhhhhhc
Q 029453 164 NVRPLEVFMC-----SIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 164 ~~~~~~~~~~-----Sa~~~~gi~~~~~~i~~~l 192 (193)
... .++.. |+..+.+++++++.|.+.+
T Consensus 152 c~~--r~~~f~~~~~~~~~~~q~~~Ll~~i~~~~ 183 (196)
T cd01852 152 CGG--RYVAFNNKAKGEEQEQQVKELLAKVESMV 183 (196)
T ss_pred hCC--eEEEEeCCCCcchhHHHHHHHHHHHHHHH
Confidence 001 12222 4677889999999987654
No 260
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.66 E-value=2.8e-15 Score=125.08 Aligned_cols=111 Identities=17% Similarity=0.055 Sum_probs=81.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcc-----cc----------------CCCCCcceeEEEeCCeEEEEEEcCChhhhHH
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLV-----QH----------------QPTQYPTSEELSIGKIKFKAFDLGGHQMARR 79 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~-----~~----------------~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~ 79 (193)
-+|+++|++++|||||++++....-. .. ..|.......+.+++..+.+|||||+.++..
T Consensus 11 rni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~~~~ 90 (689)
T TIGR00484 11 RNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVDFTV 90 (689)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcchhH
Confidence 48999999999999999999632110 00 1123344556778899999999999988877
Q ss_pred hHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC
Q 029453 80 VWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYA 136 (193)
Q Consensus 80 ~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~ 136 (193)
.....+..+|++++|+|+.++...+. ...+..+ .. .++|+++++||+|+...
T Consensus 91 ~~~~~l~~~D~~ilVvda~~g~~~~~-~~~~~~~-~~---~~~p~ivviNK~D~~~~ 142 (689)
T TIGR00484 91 EVERSLRVLDGAVAVLDAVGGVQPQS-ETVWRQA-NR---YEVPRIAFVNKMDKTGA 142 (689)
T ss_pred HHHHHHHHhCEEEEEEeCCCCCChhH-HHHHHHH-HH---cCCCEEEEEECCCCCCC
Confidence 77788899999999999987643332 2233322 22 46899999999999753
No 261
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.66 E-value=1.2e-15 Score=116.08 Aligned_cols=157 Identities=18% Similarity=0.167 Sum_probs=101.7
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHHhcCCcc--c--------------------------c--CC----CCCcceeEEEe
Q 029453 16 LWQKEAKILFLGLDNSGKTTLLHMLKDERLV--Q--------------------------H--QP----TQYPTSEELSI 61 (193)
Q Consensus 16 ~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~--~--------------------------~--~~----t~~~~~~~~~~ 61 (193)
..+.+++++++|+..+|||||+.+|+...-. . . +. |.......++-
T Consensus 3 ~~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet 82 (428)
T COG5256 3 SEKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFET 82 (428)
T ss_pred CCCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeec
Confidence 3467899999999999999999998632110 0 0 00 22223334455
Q ss_pred CCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCChh---h--HHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC
Q 029453 62 GKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKE---R--FSESKRELDALLSDEALADVPFLILGNKIDIPYA 136 (193)
Q Consensus 62 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~---~--~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~ 136 (193)
....+.++|+|||..|..-+....+++|++|+|+|+++.+ . ..+......-+.+.. .-..+++++||+|+..
T Consensus 83 ~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tl--Gi~~lIVavNKMD~v~- 159 (428)
T COG5256 83 DKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTL--GIKQLIVAVNKMDLVS- 159 (428)
T ss_pred CCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhc--CCceEEEEEEcccccc-
Confidence 6678999999999999888778889999999999998763 1 223334444443332 2356889999999985
Q ss_pred CCHH---HHHHhhCCCccccCCCcccCCCCCCccEEEEEEeeecCCChhH
Q 029453 137 ASED---ELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGE 183 (193)
Q Consensus 137 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 183 (193)
.+.+ ++..+... ..+.. .......+++|+|+..|.|+.+
T Consensus 160 wde~rf~ei~~~v~~-l~k~~-------G~~~~~v~FIPiSg~~G~Nl~~ 201 (428)
T COG5256 160 WDEERFEEIVSEVSK-LLKMV-------GYNPKDVPFIPISGFKGDNLTK 201 (428)
T ss_pred cCHHHHHHHHHHHHH-HHHHc-------CCCccCCeEEecccccCCcccc
Confidence 2222 23333332 11110 0011347899999999999865
No 262
>PRK00007 elongation factor G; Reviewed
Probab=99.66 E-value=6.2e-15 Score=123.00 Aligned_cols=112 Identities=17% Similarity=0.051 Sum_probs=80.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc--CCccc-------------------cCCCCCcceeEEEeCCeEEEEEEcCChhhhH
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKD--ERLVQ-------------------HQPTQYPTSEELSIGKIKFKAFDLGGHQMAR 78 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~--~~~~~-------------------~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~ 78 (193)
--+|+++|.+++|||||++++.. +.... ...|.......+.+++..+.++||||+..+.
T Consensus 10 Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~f~ 89 (693)
T PRK00007 10 YRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVDFT 89 (693)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHHHH
Confidence 34999999999999999999963 11000 0113334455677889999999999998887
Q ss_pred HhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC
Q 029453 79 RVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYA 136 (193)
Q Consensus 79 ~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~ 136 (193)
......+..+|++++|+|+..+-..+. ...+..+ .. .++|+++++||+|+...
T Consensus 90 ~ev~~al~~~D~~vlVvda~~g~~~qt-~~~~~~~-~~---~~~p~iv~vNK~D~~~~ 142 (693)
T PRK00007 90 IEVERSLRVLDGAVAVFDAVGGVEPQS-ETVWRQA-DK---YKVPRIAFVNKMDRTGA 142 (693)
T ss_pred HHHHHHHHHcCEEEEEEECCCCcchhh-HHHHHHH-HH---cCCCEEEEEECCCCCCC
Confidence 666777889999999999987632222 2223333 22 47899999999998743
No 263
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.65 E-value=4.6e-15 Score=114.91 Aligned_cols=169 Identities=17% Similarity=0.178 Sum_probs=109.5
Q ss_pred HHHhCCCCcccEEEEEcCCCCCHHHHHHHHhcCCccccCC----CCCcceeEEEeCCeEEEEEEcCChhhh---------
Q 029453 11 LVSLGLWQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQP----TQYPTSEELSIGKIKFKAFDLGGHQMA--------- 77 (193)
Q Consensus 11 ~~~~~~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~D~~g~~~~--------- 77 (193)
+......+..++|+++|+||+|||||+|.+.+.+..-..| |++.....+++++.++.+.||.|..+.
T Consensus 259 ~~~~e~lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~g 338 (531)
T KOG1191|consen 259 ADEIERLQSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALG 338 (531)
T ss_pred hhhHHHhhcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHh
Confidence 3444556678999999999999999999999988664333 666777888899999999999995541
Q ss_pred HHhHHhhhccCCEEEEEEeCCC--hhhHHHHHHHHHHHHh-----CCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCc
Q 029453 78 RRVWKDYYAKVDAVVYLIDAYD--KERFSESKRELDALLS-----DEALADVPFLILGNKIDIPYAASEDELRYHMGLTN 150 (193)
Q Consensus 78 ~~~~~~~~~~~d~ii~v~d~~~--~~~~~~~~~~~~~~~~-----~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~ 150 (193)
-..-.+.+..+|++++|+|+.. .++-......+...-. .......|++++.||.|+....+.... .+.
T Consensus 339 I~rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~-----~~~ 413 (531)
T KOG1191|consen 339 IERARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTK-----IPV 413 (531)
T ss_pred HHHHHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccC-----Cce
Confidence 0111234678999999999943 2211222222222211 012234789999999999754222110 000
Q ss_pred -cccCCCcccCCCCCCcc-EEEEEEeeecCCChhHHHHhhhhhc
Q 029453 151 -FTTGKGNVNLDNTNVRP-LEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 151 -~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
+..+. .... ..+..+|+++++|++.+.+.|.+.+
T Consensus 414 ~~~~~~--------~~~~~~i~~~vs~~tkeg~~~L~~all~~~ 449 (531)
T KOG1191|consen 414 VYPSAE--------GRSVFPIVVEVSCTTKEGCERLSTALLNIV 449 (531)
T ss_pred eccccc--------cCcccceEEEeeechhhhHHHHHHHHHHHH
Confidence 00000 0112 3455699999999999999887643
No 264
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.63 E-value=1e-14 Score=107.82 Aligned_cols=81 Identities=22% Similarity=0.372 Sum_probs=63.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCcc-ccCC--CCCcceeEEEeCCeEEEEEEcCChhhhH-------HhHHhhhccCC
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDERLV-QHQP--TQYPTSEELSIGKIKFKAFDLGGHQMAR-------RVWKDYYAKVD 89 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~-------~~~~~~~~~~d 89 (193)
..+++++|+|++|||||++.+.+.+.. ..++ |..+....+.+.+..+.+.|+||.-... .......++||
T Consensus 63 da~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~R~AD 142 (365)
T COG1163 63 DATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVARNAD 142 (365)
T ss_pred CeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecCceEEEEcCcccccCcccCCCCcceeeeeeccCC
Confidence 358999999999999999999987754 2333 6677888999999999999999843221 12234467899
Q ss_pred EEEEEEeCCCh
Q 029453 90 AVVYLIDAYDK 100 (193)
Q Consensus 90 ~ii~v~d~~~~ 100 (193)
.+++|+|+...
T Consensus 143 lIiiVld~~~~ 153 (365)
T COG1163 143 LIIIVLDVFED 153 (365)
T ss_pred EEEEEEecCCC
Confidence 99999999754
No 265
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.63 E-value=1.3e-15 Score=97.23 Aligned_cols=138 Identities=19% Similarity=0.219 Sum_probs=94.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCeEEEEEEcCCh----hhhHHhHHhhhccCCEEEEEEe
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGH----QMARRVWKDYYAKVDAVVYLID 96 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~----~~~~~~~~~~~~~~d~ii~v~d 96 (193)
.|++++|..|||||||.+.+-+... ....+..++++.. -.+||||. ..+..........+|++++|-.
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~~------lykKTQAve~~d~--~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~ 73 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGNDT------LYKKTQAVEFNDK--GDIDTPGEYFEHPRWYHALITTLQDADVIIYVHA 73 (148)
T ss_pred ceeEEecccccCchhHHHHhhcchh------hhcccceeeccCc--cccCCchhhhhhhHHHHHHHHHhhccceeeeeec
Confidence 4899999999999999999987552 2223334444321 25799994 3444444445678999999999
Q ss_pred CCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeee
Q 029453 97 AYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIV 176 (193)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 176 (193)
++++++ .+...+..+ ...|+|=|++|.|+..+.+.+..+..+... ...++|.+|+.
T Consensus 74 and~~s--~f~p~f~~~------~~k~vIgvVTK~DLaed~dI~~~~~~L~ea----------------Ga~~IF~~s~~ 129 (148)
T COG4917 74 ANDPES--RFPPGFLDI------GVKKVIGVVTKADLAEDADISLVKRWLREA----------------GAEPIFETSAV 129 (148)
T ss_pred ccCccc--cCCcccccc------cccceEEEEecccccchHhHHHHHHHHHHc----------------CCcceEEEecc
Confidence 998753 333333333 356799999999998544443333222211 23479999999
Q ss_pred cCCChhHHHHhhhh
Q 029453 177 RKMGYGEGFKWLSQ 190 (193)
Q Consensus 177 ~~~gi~~~~~~i~~ 190 (193)
++.|++++++.|..
T Consensus 130 d~~gv~~l~~~L~~ 143 (148)
T COG4917 130 DNQGVEELVDYLAS 143 (148)
T ss_pred CcccHHHHHHHHHh
Confidence 99999999998854
No 266
>PRK09866 hypothetical protein; Provisional
Probab=99.62 E-value=3.7e-14 Score=114.14 Aligned_cols=114 Identities=19% Similarity=0.217 Sum_probs=72.1
Q ss_pred eEEEEEEcCChhh-----hHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC
Q 029453 64 IKFKAFDLGGHQM-----ARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAAS 138 (193)
Q Consensus 64 ~~~~~~D~~g~~~-----~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~ 138 (193)
..+.++||||... ........+..+|+++||+|+.+.-+.. ...+...+...+ .+.|+++|+||+|+.....
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~--DeeIlk~Lkk~~-K~~PVILVVNKIDl~dree 306 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSIS--DEEVREAILAVG-QSVPLYVLVNKFDQQDRNS 306 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChh--HHHHHHHHHhcC-CCCCEEEEEEcccCCCccc
Confidence 4678999999543 2334455788999999999998742222 223333333321 1359999999999863222
Q ss_pred --HHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeeecCCChhHHHHhhhh
Q 029453 139 --EDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQ 190 (193)
Q Consensus 139 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~ 190 (193)
.+.+........ .. .......++++||+.|.|++++++.|.+
T Consensus 307 ddkE~Lle~V~~~L-~q---------~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 307 DDADQVRALISGTL-MK---------GCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred chHHHHHHHHHHHH-Hh---------cCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 334333322110 00 0013458999999999999999999876
No 267
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.62 E-value=1e-14 Score=111.23 Aligned_cols=132 Identities=16% Similarity=0.288 Sum_probs=96.0
Q ss_pred CcceeEEEeCCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCCh----------hhHHHHHHHHHHHHhCCCCCCC
Q 029453 53 YPTSEELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDK----------ERFSESKRELDALLSDEALADV 122 (193)
Q Consensus 53 ~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~----------~~~~~~~~~~~~~~~~~~~~~~ 122 (193)
+.....+.+++..+.+||++|+...+..|.+++.+++++++|+|.++- ..+.+....+..+++.....+.
T Consensus 150 Gi~~~~f~~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~ 229 (317)
T cd00066 150 GIVETKFTIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANT 229 (317)
T ss_pred CeeEEEEEecceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCC
Confidence 445556677889999999999999999999999999999999999863 5678888888888887776889
Q ss_pred cEEEEeeCCCCCCC------------------CCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeeecCCChhHH
Q 029453 123 PFLILGNKIDIPYA------------------ASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEG 184 (193)
Q Consensus 123 pviiv~nK~Dl~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~ 184 (193)
|+++++||.|+... ...++....+...+... .....+.+-+..++|.+-.+++.+
T Consensus 230 pill~~NK~D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~-------~~~~~~~~~~~~t~a~Dt~~i~~v 302 (317)
T cd00066 230 SIILFLNKKDLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDL-------NRNPNKEIYPHFTCATDTENIRFV 302 (317)
T ss_pred CEEEEccChHHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHh-------hcCCCCeEEEEeccccchHHHHHH
Confidence 99999999996411 11112111111111110 011124567788899999999999
Q ss_pred HHhhhhh
Q 029453 185 FKWLSQY 191 (193)
Q Consensus 185 ~~~i~~~ 191 (193)
|+.+.+.
T Consensus 303 f~~v~~~ 309 (317)
T cd00066 303 FDAVKDI 309 (317)
T ss_pred HHHHHHH
Confidence 9887654
No 268
>PRK13768 GTPase; Provisional
Probab=99.62 E-value=4.9e-15 Score=109.60 Aligned_cols=128 Identities=19% Similarity=0.155 Sum_probs=73.8
Q ss_pred eEEEEEEcCChhhhH---HhHHh---hhcc--CCEEEEEEeCCChhhHHHHH-HHHHHHHhCCCCCCCcEEEEeeCCCCC
Q 029453 64 IKFKAFDLGGHQMAR---RVWKD---YYAK--VDAVVYLIDAYDKERFSESK-RELDALLSDEALADVPFLILGNKIDIP 134 (193)
Q Consensus 64 ~~~~~~D~~g~~~~~---~~~~~---~~~~--~d~ii~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~pviiv~nK~Dl~ 134 (193)
.++.+||+||+.+.. ..++. .+.. .+++++|+|+....+..... .++..... ....++|+++|+||+|+.
T Consensus 97 ~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~-~~~~~~~~i~v~nK~D~~ 175 (253)
T PRK13768 97 ADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSV-QLRLGLPQIPVLNKADLL 175 (253)
T ss_pred CCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHH-HHHcCCCEEEEEEhHhhc
Confidence 478999999976642 22222 2333 89999999997643332222 11111111 011479999999999998
Q ss_pred CCCCHHHHHHhhCCCcc-----ccCCCc-----ccCC---CCCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 135 YAASEDELRYHMGLTNF-----TTGKGN-----VNLD---NTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 135 ~~~~~~~~~~~~~~~~~-----~~~~~~-----~~~~---~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
.....++....+..... ...... .++. .......+++++|++++.|+++++++|.+.+
T Consensus 176 ~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l 246 (253)
T PRK13768 176 SEEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVF 246 (253)
T ss_pred CchhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHc
Confidence 66555554444432000 000000 0000 0001224789999999999999999998765
No 269
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.61 E-value=3.3e-14 Score=109.28 Aligned_cols=133 Identities=15% Similarity=0.287 Sum_probs=95.5
Q ss_pred CcceeEEEeCCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCC----------hhhHHHHHHHHHHHHhCCCCCCC
Q 029453 53 YPTSEELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYD----------KERFSESKRELDALLSDEALADV 122 (193)
Q Consensus 53 ~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~ 122 (193)
+.....+.+++..+.+||.+|+...+..|.++++++++++||+|.++ ...+.+....+..+++.....+.
T Consensus 173 Gi~~~~f~~~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~ 252 (342)
T smart00275 173 GIQETAFIVKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANT 252 (342)
T ss_pred ceEEEEEEECCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCC
Confidence 44455666778899999999999999999999999999999999996 34678888899999887777889
Q ss_pred cEEEEeeCCCCCC----CC-------------CHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeeecCCChhHHH
Q 029453 123 PFLILGNKIDIPY----AA-------------SEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGF 185 (193)
Q Consensus 123 pviiv~nK~Dl~~----~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~ 185 (193)
|+++++||.|+.. .. ..++....+...+..... ....+.+-++.++|.+-.++..+|
T Consensus 253 piil~~NK~D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~------~~~~r~~y~h~t~a~Dt~~~~~v~ 326 (342)
T smart00275 253 SIILFLNKIDLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNR------NSSRKSIYHHFTCATDTRNIRVVF 326 (342)
T ss_pred cEEEEEecHHhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhcc------CCCCceEEEEEeeecccHHHHHHH
Confidence 9999999999741 11 111111111111110000 001245677888899999999999
Q ss_pred Hhhhhh
Q 029453 186 KWLSQY 191 (193)
Q Consensus 186 ~~i~~~ 191 (193)
+.+.+.
T Consensus 327 ~~v~~~ 332 (342)
T smart00275 327 DAVKDI 332 (342)
T ss_pred HHHHHH
Confidence 876543
No 270
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.61 E-value=1.6e-14 Score=123.18 Aligned_cols=155 Identities=19% Similarity=0.195 Sum_probs=93.1
Q ss_pred CCHHHHHHHHhcCCccccCC---CCCcceeEEEeCC------------------eEEEEEEcCChhhhHHhHHhhhccCC
Q 029453 31 SGKTTLLHMLKDERLVQHQP---TQYPTSEELSIGK------------------IKFKAFDLGGHQMARRVWKDYYAKVD 89 (193)
Q Consensus 31 ~GKssl~~~l~~~~~~~~~~---t~~~~~~~~~~~~------------------~~~~~~D~~g~~~~~~~~~~~~~~~d 89 (193)
++||||+..+.+......+. |.......+..+. ..+.+||||||+.+..+.......+|
T Consensus 472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aD 551 (1049)
T PRK14845 472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLAD 551 (1049)
T ss_pred cccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCC
Confidence 45999999998777654332 3333222333221 13799999999999887777788899
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC--------------HHHHHHhhCCC------
Q 029453 90 AVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAAS--------------EDELRYHMGLT------ 149 (193)
Q Consensus 90 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~--------------~~~~~~~~~~~------ 149 (193)
++++|+|++++- ..........+.. .++|+++++||+|+.+... .+....++...
T Consensus 552 ivlLVVDa~~Gi--~~qT~e~I~~lk~---~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v~~ 626 (1049)
T PRK14845 552 LAVLVVDINEGF--KPQTIEAINILRQ---YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYELIG 626 (1049)
T ss_pred EEEEEEECcccC--CHhHHHHHHHHHH---cCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHHHhh
Confidence 999999998741 1111111122222 3689999999999964221 01111111100
Q ss_pred -ccccCCCcc--cCCCCCCccEEEEEEeeecCCChhHHHHhhhh
Q 029453 150 -NFTTGKGNV--NLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQ 190 (193)
Q Consensus 150 -~~~~~~~~~--~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~ 190 (193)
..+.+...+ .....+....+++++||++|+|++++.++|..
T Consensus 627 ~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~ 670 (1049)
T PRK14845 627 KLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAG 670 (1049)
T ss_pred HHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHH
Confidence 000000000 00012345689999999999999999998853
No 271
>PRK12740 elongation factor G; Reviewed
Probab=99.60 E-value=5.1e-14 Score=117.53 Aligned_cols=106 Identities=19% Similarity=0.096 Sum_probs=76.2
Q ss_pred EcCCCCCHHHHHHHHhcCCcc--c-------------------cCCCCCcceeEEEeCCeEEEEEEcCChhhhHHhHHhh
Q 029453 26 LGLDNSGKTTLLHMLKDERLV--Q-------------------HQPTQYPTSEELSIGKIKFKAFDLGGHQMARRVWKDY 84 (193)
Q Consensus 26 ~G~~~~GKssl~~~l~~~~~~--~-------------------~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~ 84 (193)
+|++|+|||||++++....-. . ...|.......+.+.+..+.+|||||+..+...+...
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~ 80 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA 80 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence 599999999999999432210 0 0112333445677889999999999999887777788
Q ss_pred hccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC
Q 029453 85 YAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYA 136 (193)
Q Consensus 85 ~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~ 136 (193)
+..+|++++|+|+++....+.. ..+..+. . .++|+++++||+|+...
T Consensus 81 l~~aD~vllvvd~~~~~~~~~~-~~~~~~~-~---~~~p~iiv~NK~D~~~~ 127 (668)
T PRK12740 81 LRVLDGAVVVVCAVGGVEPQTE-TVWRQAE-K---YGVPRIIFVNKMDRAGA 127 (668)
T ss_pred HHHhCeEEEEEeCCCCcCHHHH-HHHHHHH-H---cCCCEEEEEECCCCCCC
Confidence 8999999999999886433322 2233332 2 47899999999998743
No 272
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.57 E-value=3.9e-15 Score=108.84 Aligned_cols=123 Identities=15% Similarity=0.084 Sum_probs=60.4
Q ss_pred EEEEEEcCChhhhHHhHHhhh--------ccCCEEEEEEeCCChhh---HHH-HHHHHHHHHhCCCCCCCcEEEEeeCCC
Q 029453 65 KFKAFDLGGHQMARRVWKDYY--------AKVDAVVYLIDAYDKER---FSE-SKRELDALLSDEALADVPFLILGNKID 132 (193)
Q Consensus 65 ~~~~~D~~g~~~~~~~~~~~~--------~~~d~ii~v~d~~~~~~---~~~-~~~~~~~~~~~~~~~~~pviiv~nK~D 132 (193)
.+.++|||||.++...+...- ...-++++++|+....+ +-. ...-+...++ .+.|.+.|+||+|
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~----~~lP~vnvlsK~D 167 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLR----LELPHVNVLSKID 167 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHH----HTSEEEEEE--GG
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhh----CCCCEEEeeeccC
Confidence 799999999988765554432 34568999999974332 322 1222222222 3799999999999
Q ss_pred CCCCCCHHH-HHHhhCCCc--------ccc-CCCcccCCCCCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 133 IPYAASEDE-LRYHMGLTN--------FTT-GKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 133 l~~~~~~~~-~~~~~~~~~--------~~~-~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
+.... .+. +........ ... ......+-..+.....++++|+.+++|+++++..|.+++
T Consensus 168 l~~~~-~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 168 LLSKY-LEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp GS-HH-HHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred cccch-hHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 97532 211 111110000 000 000000011122234899999999999999999998754
No 273
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.57 E-value=1.7e-13 Score=107.03 Aligned_cols=78 Identities=23% Similarity=0.279 Sum_probs=54.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-cCC--CCCcceeEEEe------------------------CCeEEEEEEcCC
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLVQ-HQP--TQYPTSEELSI------------------------GKIKFKAFDLGG 73 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~--t~~~~~~~~~~------------------------~~~~~~~~D~~g 73 (193)
++|+++|.||||||||+|++.+..... .++ |..++...... ....+.+||+||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 689999999999999999999876542 222 43444433221 125688999999
Q ss_pred hh----hhHH---hHHhhhccCCEEEEEEeCC
Q 029453 74 HQ----MARR---VWKDYYAKVDAVVYLIDAY 98 (193)
Q Consensus 74 ~~----~~~~---~~~~~~~~~d~ii~v~d~~ 98 (193)
.. +... .+...++.+|++++|+|+.
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 42 2222 2333478999999999996
No 274
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.56 E-value=4.5e-15 Score=107.38 Aligned_cols=176 Identities=20% Similarity=0.223 Sum_probs=104.0
Q ss_pred hCCCCcccEEEEEcCCCCCHHHHHHHHhcCCcc----cc----------CC---------CC-----------CcceeEE
Q 029453 14 LGLWQKEAKILFLGLDNSGKTTLLHMLKDERLV----QH----------QP---------TQ-----------YPTSEEL 59 (193)
Q Consensus 14 ~~~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~----~~----------~~---------t~-----------~~~~~~~ 59 (193)
.+..+++.-|.++|.+|||||||+++|...-.. .+ .| |. +|+-...
T Consensus 13 ~~~~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~ 92 (366)
T KOG1532|consen 13 SGAIQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIV 92 (366)
T ss_pred cccccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchh
Confidence 345678889999999999999999998522111 00 00 00 1111100
Q ss_pred -------------------EeCCeEEEEEEcCChhhhHHhH-------Hh-hhccCCEEEEEEeCCC---hhhHHHHHHH
Q 029453 60 -------------------SIGKIKFKAFDLGGHQMARRVW-------KD-YYAKVDAVVYLIDAYD---KERFSESKRE 109 (193)
Q Consensus 60 -------------------~~~~~~~~~~D~~g~~~~~~~~-------~~-~~~~~d~ii~v~d~~~---~~~~~~~~~~ 109 (193)
......+.++|||||-+...+- .. .-....+++|++|... +.+|......
T Consensus 93 TsLNLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlY 172 (366)
T KOG1532|consen 93 TSLNLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLY 172 (366)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHH
Confidence 0023568899999986432111 11 1124678999999854 5555555555
Q ss_pred HHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCc----------ccc-CCCcccCCCCCCccEEEEEEeeecC
Q 029453 110 LDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTN----------FTT-GKGNVNLDNTNVRPLEVFMCSIVRK 178 (193)
Q Consensus 110 ~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~----------~~~-~~~~~~~~~~~~~~~~~~~~Sa~~~ 178 (193)
-..++.. ...|.+++.||+|+....-..+|...+.... +.. .....-.-..+.+....+.+||.+|
T Consensus 173 AcSilyk---tklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG 249 (366)
T KOG1532|consen 173 ACSILYK---TKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTG 249 (366)
T ss_pred HHHHHHh---ccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccC
Confidence 5555544 6899999999999975433333333222111 000 0000000122335578999999999
Q ss_pred CChhHHHHhhhhhc
Q 029453 179 MGYGEGFKWLSQYI 192 (193)
Q Consensus 179 ~gi~~~~~~i~~~l 192 (193)
.|.+++|..+.+.+
T Consensus 250 ~G~ddf~~av~~~v 263 (366)
T KOG1532|consen 250 EGFDDFFTAVDESV 263 (366)
T ss_pred CcHHHHHHHHHHHH
Confidence 99999999987643
No 275
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.55 E-value=1.4e-13 Score=100.31 Aligned_cols=146 Identities=16% Similarity=0.079 Sum_probs=87.2
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcceeEEEeCCeEEEEEEcCChhhhHHhHHhhhccCCEEEEE
Q 029453 16 LWQKEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPTSEELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYL 94 (193)
Q Consensus 16 ~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 94 (193)
...+...|+++|++|+|||||++.+.+..... .....+. .......+..+.++||||.- ... ....+.+|++++|
T Consensus 35 ~~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i~i~~~~~~~i~~vDtPg~~--~~~-l~~ak~aDvVllv 110 (225)
T cd01882 35 EEPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-ITVVTGKKRRLTFIECPNDI--NAM-IDIAKVADLVLLL 110 (225)
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-EEEEecCCceEEEEeCCchH--HHH-HHHHHhcCEEEEE
Confidence 35677889999999999999999987653221 1111121 11233467788999999964 222 2345789999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhCCCCCCCcE-EEEeeCCCCCCCC-CHHHHHHhhCCCccccCCCcccCCCCCCccEEEEE
Q 029453 95 IDAYDKERFSESKRELDALLSDEALADVPF-LILGNKIDIPYAA-SEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFM 172 (193)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~pv-iiv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (193)
+|++.+.. .....+...+.. .+.|. ++|+||+|+.+.. ..++....+...+... .....++++
T Consensus 111 iDa~~~~~--~~~~~i~~~l~~---~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~----------~~~~~ki~~ 175 (225)
T cd01882 111 IDASFGFE--METFEFLNILQV---HGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTE----------VYQGAKLFY 175 (225)
T ss_pred EecCcCCC--HHHHHHHHHHHH---cCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHh----------hCCCCcEEE
Confidence 99986532 222223333332 35674 5599999986322 1223333332211100 012358999
Q ss_pred EeeecCCC
Q 029453 173 CSIVRKMG 180 (193)
Q Consensus 173 ~Sa~~~~g 180 (193)
+||++...
T Consensus 176 iSa~~~~~ 183 (225)
T cd01882 176 LSGIVHGR 183 (225)
T ss_pred EeeccCCC
Confidence 99988743
No 276
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.54 E-value=1e-13 Score=103.77 Aligned_cols=111 Identities=19% Similarity=0.241 Sum_probs=69.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCccccC-----------CCCCcce--eEEEeCC--eEEEEEEcCChhhh------
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERLVQHQ-----------PTQYPTS--EELSIGK--IKFKAFDLGGHQMA------ 77 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~-----------~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~------ 77 (193)
-.++|+++|.+|+|||||+|++++....... +|..... ..+..++ ..+.+|||||....
T Consensus 3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~ 82 (276)
T cd01850 3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDC 82 (276)
T ss_pred cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhh
Confidence 3689999999999999999999988765321 1221211 2233334 57999999994321
Q ss_pred ------------HHhHH--------hhhc--cCCEEEEEEeCCChhhHHHH-HHHHHHHHhCCCCCCCcEEEEeeCCCCC
Q 029453 78 ------------RRVWK--------DYYA--KVDAVVYLIDAYDKERFSES-KRELDALLSDEALADVPFLILGNKIDIP 134 (193)
Q Consensus 78 ------------~~~~~--------~~~~--~~d~ii~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~pviiv~nK~Dl~ 134 (193)
..... ..+. .+|+++|+++.+... +... ...+..+. ..+|+++|+||+|+.
T Consensus 83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~-l~~~D~~~lk~l~-----~~v~vi~VinK~D~l 156 (276)
T cd01850 83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHG-LKPLDIEFMKRLS-----KRVNIIPVIAKADTL 156 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCC-CCHHHHHHHHHHh-----ccCCEEEEEECCCcC
Confidence 00000 1111 478999999987521 2333 33333332 258999999999996
Q ss_pred C
Q 029453 135 Y 135 (193)
Q Consensus 135 ~ 135 (193)
.
T Consensus 157 ~ 157 (276)
T cd01850 157 T 157 (276)
T ss_pred C
Confidence 4
No 277
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.54 E-value=1.8e-13 Score=104.13 Aligned_cols=108 Identities=17% Similarity=0.096 Sum_probs=68.9
Q ss_pred CeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHH-
Q 029453 63 KIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDE- 141 (193)
Q Consensus 63 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~- 141 (193)
+.++.++||+|...-... ....+|.++++.+...++.++.......++ .-++|+||+|+......+.
T Consensus 148 g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k~gi~E~---------aDIiVVNKaDl~~~~~a~~~ 215 (332)
T PRK09435 148 GYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIKKGIMEL---------ADLIVINKADGDNKTAARRA 215 (332)
T ss_pred CCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHHhhhhhh---------hheEEeehhcccchhHHHHH
Confidence 578999999997633322 355699999998755554444433222222 2389999999875433333
Q ss_pred ---HHHhhCCCccccCCCcccCCCCCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 142 ---LRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 142 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
+...+....- ....+..+++.+||+++.|+++++++|.+++
T Consensus 216 ~~el~~~L~l~~~----------~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~ 259 (332)
T PRK09435 216 AAEYRSALRLLRP----------KDPGWQPPVLTCSALEGEGIDEIWQAIEDHR 259 (332)
T ss_pred HHHHHHHHhcccc----------cccCCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 3333332110 0001335799999999999999999998753
No 278
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=99.54 E-value=2.5e-16 Score=107.20 Aligned_cols=158 Identities=17% Similarity=0.146 Sum_probs=117.9
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCc--ceeEEEeCC---eEEEEEEcCChhhhHHhHHhhhccCCEEE
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYP--TSEELSIGK---IKFKAFDLGGHQMARRVWKDYYAKVDAVV 92 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~~~---~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 92 (193)
.-+++.++|..|+|||+++.++....+.. +..|.+. ....+.++. ..+.+||..||+++..+..-+++.+++..
T Consensus 24 hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~~ 103 (229)
T KOG4423|consen 24 HLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGAF 103 (229)
T ss_pred hhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcceE
Confidence 45799999999999999999998776653 3334432 223334433 35679999999999988888899999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhCC---CCCCCcEEEEeeCCCCCCCCCHH--HHHHhhCCCccccCCCcccCCCCCCcc
Q 029453 93 YLIDAYDKERFSESKRELDALLSDE---ALADVPFLILGNKIDIPYAASED--ELRYHMGLTNFTTGKGNVNLDNTNVRP 167 (193)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~---~~~~~pviiv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (193)
+|+|+++.-+|+....|..++.... +....|+++..||||..+....+ ...+.+.... ..
T Consensus 104 iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~ken---------------gf 168 (229)
T KOG4423|consen 104 IVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKEN---------------GF 168 (229)
T ss_pred EEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhcc---------------Cc
Confidence 9999999988999999998886543 33457889999999986433222 1222222222 34
Q ss_pred EEEEEEeeecCCChhHHHHhhhhh
Q 029453 168 LEVFMCSIVRKMGYGEGFKWLSQY 191 (193)
Q Consensus 168 ~~~~~~Sa~~~~gi~~~~~~i~~~ 191 (193)
...+++|+|.+.|++|+.+.+++.
T Consensus 169 ~gwtets~Kenkni~Ea~r~lVe~ 192 (229)
T KOG4423|consen 169 EGWTETSAKENKNIPEAQRELVEK 192 (229)
T ss_pred cceeeeccccccChhHHHHHHHHH
Confidence 578999999999999999998764
No 279
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.54 E-value=3.7e-13 Score=99.09 Aligned_cols=120 Identities=15% Similarity=0.092 Sum_probs=76.0
Q ss_pred hCCCCcccEEEEEcCCCCCHHHHHHHHhcCCccccC----CCCCcceeEEEeCCeEEEEEEcCChhhhH----------H
Q 029453 14 LGLWQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQ----PTQYPTSEELSIGKIKFKAFDLGGHQMAR----------R 79 (193)
Q Consensus 14 ~~~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~----~t~~~~~~~~~~~~~~~~~~D~~g~~~~~----------~ 79 (193)
..-...+++|+++|.+|+|||||+|.+++....... .|...........+..+.+|||||..... .
T Consensus 25 ~~~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~ 104 (249)
T cd01853 25 KEELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILS 104 (249)
T ss_pred hhhccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHH
Confidence 344668899999999999999999999987754322 23333344445677889999999954331 0
Q ss_pred hHHhhhc--cCCEEEEEEeCCChh-hHH--HHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC
Q 029453 80 VWKDYYA--KVDAVVYLIDAYDKE-RFS--ESKRELDALLSDEALADVPFLILGNKIDIPY 135 (193)
Q Consensus 80 ~~~~~~~--~~d~ii~v~d~~~~~-~~~--~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~ 135 (193)
....+++ ..+++++|..++... ... .+.+.+...+.. .--.++++|.||+|..+
T Consensus 105 ~I~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~--~i~~~~ivV~T~~d~~~ 163 (249)
T cd01853 105 SIKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGP--SIWRNAIVVLTHAASSP 163 (249)
T ss_pred HHHHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhCh--hhHhCEEEEEeCCccCC
Confidence 1122333 578888887665421 111 233333433221 11257999999999873
No 280
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.51 E-value=6.5e-14 Score=113.10 Aligned_cols=169 Identities=18% Similarity=0.215 Sum_probs=108.2
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCccccC---------CCCCcce------------eEEEeCCeEEEEEEcCChhh
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQHQ---------PTQYPTS------------EELSIGKIKFKAFDLGGHQM 76 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~---------~t~~~~~------------~~~~~~~~~~~~~D~~g~~~ 76 (193)
-+++-+||+|+..+|||-|+..+.+....... .|+.+.. ..-++.---+.++|||||+.
T Consensus 473 lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEs 552 (1064)
T KOG1144|consen 473 LRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHES 552 (1064)
T ss_pred cCCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchh
Confidence 37788999999999999999998764433111 1222111 00011122467899999999
Q ss_pred hHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC------CCCCH-----------
Q 029453 77 ARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIP------YAASE----------- 139 (193)
Q Consensus 77 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~------~~~~~----------- 139 (193)
|........+.||.+|+|+|+.++ +....-.-..+++. .+.|.||.+||+|.. +....
T Consensus 553 FtnlRsrgsslC~~aIlvvdImhG--lepqtiESi~lLR~---rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~v 627 (1064)
T KOG1144|consen 553 FTNLRSRGSSLCDLAILVVDIMHG--LEPQTIESINLLRM---RKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKDV 627 (1064)
T ss_pred hhhhhhccccccceEEEEeehhcc--CCcchhHHHHHHHh---cCCCeEEeehhhhhhcccccCCCchHHHHHHHhhHHH
Confidence 999988888999999999999765 22222222233333 589999999999964 11111
Q ss_pred -HHHHHhhCCCccccCCCcccCC-----CCCCccEEEEEEeeecCCChhHHHHhhhhh
Q 029453 140 -DELRYHMGLTNFTTGKGNVNLD-----NTNVRPLEVFMCSIVRKMGYGEGFKWLSQY 191 (193)
Q Consensus 140 -~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~ 191 (193)
.++...++....+.+....+.. ......+-++|+||.+|+||.+++-||++.
T Consensus 628 ~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~l 685 (1064)
T KOG1144|consen 628 QNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQL 685 (1064)
T ss_pred HHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHH
Confidence 2233333332222222222221 112345789999999999999999999764
No 281
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.50 E-value=2.3e-13 Score=114.08 Aligned_cols=137 Identities=18% Similarity=0.088 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHhCCCCcccEEEEEcCCCCCHHHHHHHHhcCC---------------cccc----CCCCCccee----EE
Q 029453 3 LVDWFYGILVSLGLWQKEAKILFLGLDNSGKTTLLHMLKDER---------------LVQH----QPTQYPTSE----EL 59 (193)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~i~i~G~~~~GKssl~~~l~~~~---------------~~~~----~~t~~~~~~----~~ 59 (193)
|++++..... ..++--+|+++|+.++|||||++++.... +... ..|...... .+
T Consensus 5 ~~~~~~~~~~---~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~ 81 (720)
T TIGR00490 5 MIDKIKELMW---KPKFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEY 81 (720)
T ss_pred HHHHHHHHhh---CcccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEee
Confidence 3444444432 33455699999999999999999986421 1110 112222111 23
Q ss_pred EeCCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC---C
Q 029453 60 SIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY---A 136 (193)
Q Consensus 60 ~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~---~ 136 (193)
.+.+..+.+|||||+.++.......+..+|++++|+|+.+.-..+. ...+..... .+.|.++++||+|... .
T Consensus 82 ~~~~~~i~liDTPG~~~f~~~~~~al~~aD~~llVvda~~g~~~~t-~~~~~~~~~----~~~p~ivviNKiD~~~~~~~ 156 (720)
T TIGR00490 82 EGNEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQT-ETVLRQALK----ENVKPVLFINKVDRLINELK 156 (720)
T ss_pred cCCceEEEEEeCCCccccHHHHHHHHHhcCEEEEEEecCCCCCccH-HHHHHHHHH----cCCCEEEEEEChhcccchhc
Confidence 4567889999999999887777788899999999999987421111 222222222 3678899999999863 2
Q ss_pred CCHHHHHHhhC
Q 029453 137 ASEDELRYHMG 147 (193)
Q Consensus 137 ~~~~~~~~~~~ 147 (193)
...+++...++
T Consensus 157 ~~~~~~~~~~~ 167 (720)
T TIGR00490 157 LTPQELQERFI 167 (720)
T ss_pred CCHHHHHHHHh
Confidence 34444554443
No 282
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.49 E-value=1.2e-13 Score=102.17 Aligned_cols=161 Identities=20% Similarity=0.168 Sum_probs=100.9
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCccccCC--CC------------------------CcceeEEEeC------CeE
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQHQP--TQ------------------------YPTSEELSIG------KIK 65 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~--t~------------------------~~~~~~~~~~------~~~ 65 (193)
+...+|+.+|...-|||||...+++--....+. .+ ......+... -+.
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~ 87 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR 87 (415)
T ss_pred CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence 678999999999999999999997543221100 00 0000111111 157
Q ss_pred EEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC-HHHHHH
Q 029453 66 FKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAAS-EDELRY 144 (193)
Q Consensus 66 ~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~-~~~~~~ 144 (193)
+.++|.|||+-.-..+...-.--|++++|++++++.. +.........+... .-+.++++-||+|+...+. .++.++
T Consensus 88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcP-QPQT~EHl~AleIi--gik~iiIvQNKIDlV~~E~AlE~y~q 164 (415)
T COG5257 88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCP-QPQTREHLMALEII--GIKNIIIVQNKIDLVSRERALENYEQ 164 (415)
T ss_pred EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCC-CCchHHHHHHHhhh--ccceEEEEecccceecHHHHHHHHHH
Confidence 8899999999765544433334699999999998643 22222222222232 2356899999999974222 222222
Q ss_pred hhCCCccccCCCcccCCCCCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 145 HMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
..+... ....+..+++++||..+.|++-++++|.+++
T Consensus 165 Ik~Fvk-----------Gt~Ae~aPIIPiSA~~~~NIDal~e~i~~~I 201 (415)
T COG5257 165 IKEFVK-----------GTVAENAPIIPISAQHKANIDALIEAIEKYI 201 (415)
T ss_pred HHHHhc-----------ccccCCCceeeehhhhccCHHHHHHHHHHhC
Confidence 222222 1123557999999999999999999998875
No 283
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=99.48 E-value=3e-13 Score=99.36 Aligned_cols=162 Identities=18% Similarity=0.092 Sum_probs=105.3
Q ss_pred HHHhCCCCcccEEEEEcCCCCCHHHHHHHHhcCCcc-----------ccCC-CCC---------------cce-------
Q 029453 11 LVSLGLWQKEAKILFLGLDNSGKTTLLHMLKDERLV-----------QHQP-TQY---------------PTS------- 56 (193)
Q Consensus 11 ~~~~~~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~-----------~~~~-t~~---------------~~~------- 56 (193)
....+..-+...|+|.|.||+|||||+..|...-.. +.+| |.+ +..
T Consensus 42 ~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~s 121 (323)
T COG1703 42 RALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPS 121 (323)
T ss_pred HHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCC
Confidence 344556678889999999999999999998521100 1111 110 000
Q ss_pred -e--------------EEEeCCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCC
Q 029453 57 -E--------------ELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALAD 121 (193)
Q Consensus 57 -~--------------~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (193)
. .++-.++++.+++|.|..+..-. ..+-+|.+++|.=..-++.++....-+.++..
T Consensus 122 rG~lGGlS~at~~~i~~ldAaG~DvIIVETVGvGQsev~---I~~~aDt~~~v~~pg~GD~~Q~iK~GimEiaD------ 192 (323)
T COG1703 122 RGTLGGLSRATREAIKLLDAAGYDVIIVETVGVGQSEVD---IANMADTFLVVMIPGAGDDLQGIKAGIMEIAD------ 192 (323)
T ss_pred CccchhhhHHHHHHHHHHHhcCCCEEEEEecCCCcchhH---HhhhcceEEEEecCCCCcHHHHHHhhhhhhhh------
Confidence 0 01112688999999886544332 23448999999888777778888887777742
Q ss_pred CcEEEEeeCCCCCCC-CCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 122 VPFLILGNKIDIPYA-ASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 122 ~pviiv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
++|+||.|.... ....++...+..... ......+..+++.+||.+|+|++++++.|.+..
T Consensus 193 ---i~vINKaD~~~A~~a~r~l~~al~~~~~--------~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~ 253 (323)
T COG1703 193 ---IIVINKADRKGAEKAARELRSALDLLRE--------VWRENGWRPPVVTTSALEGEGIDELWDAIEDHR 253 (323)
T ss_pred ---eeeEeccChhhHHHHHHHHHHHHHhhcc--------cccccCCCCceeEeeeccCCCHHHHHHHHHHHH
Confidence 899999996422 222334444444420 011223678999999999999999999998753
No 284
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.48 E-value=1e-12 Score=93.79 Aligned_cols=102 Identities=15% Similarity=0.258 Sum_probs=62.0
Q ss_pred eEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC--CCHHH
Q 029453 64 IKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYA--ASEDE 141 (193)
Q Consensus 64 ~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~--~~~~~ 141 (193)
.+..++++.|..-...... . -++.++.|+|+.+.+.... .....+ ...=++++||+|+.+. ...+.
T Consensus 92 ~D~iiIEt~G~~l~~~~~~-~--l~~~~i~vvD~~~~~~~~~--~~~~qi-------~~ad~~~~~k~d~~~~~~~~~~~ 159 (199)
T TIGR00101 92 LEMVFIESGGDNLSATFSP-E--LADLTIFVIDVAAGDKIPR--KGGPGI-------TRSDLLVINKIDLAPMVGADLGV 159 (199)
T ss_pred CCEEEEECCCCCcccccch-h--hhCcEEEEEEcchhhhhhh--hhHhHh-------hhccEEEEEhhhccccccccHHH
Confidence 4566777777321111111 1 2678999999987654321 100111 1223899999999853 33333
Q ss_pred HHHhhCCCccccCCCcccCCCCCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 142 LRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
+.+...... ...+++++||++|+|++++++||.+++
T Consensus 160 ~~~~~~~~~---------------~~~~i~~~Sa~~g~gi~el~~~i~~~~ 195 (199)
T TIGR00101 160 MERDAKKMR---------------GEKPFIFTNLKTKEGLDTVIDWIEHYA 195 (199)
T ss_pred HHHHHHHhC---------------CCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 333333222 235789999999999999999998765
No 285
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.47 E-value=2.4e-12 Score=96.40 Aligned_cols=115 Identities=13% Similarity=0.194 Sum_probs=72.4
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCccccCC----CCCcceeEEEeCCeEEEEEEcCChhhhHH-------hHHhhh-
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQHQP----TQYPTSEELSIGKIKFKAFDLGGHQMARR-------VWKDYY- 85 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~D~~g~~~~~~-------~~~~~~- 85 (193)
.+.++|+++|.+|+||||++|+|++........ +..+........+..+.++||||...... ....++
T Consensus 36 ~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l~ 115 (313)
T TIGR00991 36 VSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEGGYINDQAVNIIKRFLL 115 (313)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEECCCCCchHHHHHHHHHHHHHHhh
Confidence 478899999999999999999999877432211 22223334445788999999999553311 111112
Q ss_pred -ccCCEEEEEEeCCC--hhhH-HHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC
Q 029453 86 -AKVDAVVYLIDAYD--KERF-SESKRELDALLSDEALADVPFLILGNKIDIP 134 (193)
Q Consensus 86 -~~~d~ii~v~d~~~--~~~~-~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~ 134 (193)
...|+++||...+. .... ......+...+... --.++++++|++|..
T Consensus 116 ~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~--iw~~~IVVfTh~d~~ 166 (313)
T TIGR00991 116 GKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKD--IWRKSLVVLTHAQFS 166 (313)
T ss_pred cCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhh--hhccEEEEEECCccC
Confidence 25899999965442 2211 22333344443211 235799999999976
No 286
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.47 E-value=7.6e-13 Score=98.86 Aligned_cols=158 Identities=18% Similarity=0.117 Sum_probs=99.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCcc---ccCC---CCCcc----eeEEE---------eCCeEEEEEEcCChhhhHHh
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDERLV---QHQP---TQYPT----SEELS---------IGKIKFKAFDLGGHQMARRV 80 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~~~~---~~~~---t~~~~----~~~~~---------~~~~~~~~~D~~g~~~~~~~ 80 (193)
.++++++|...||||||.+++..-... ...| +++.+ ...+. .....+.++|+|||....+.
T Consensus 7 n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLIRt 86 (522)
T KOG0461|consen 7 NLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLIRT 86 (522)
T ss_pred eeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHHHH
Confidence 489999999999999999998633211 1111 11111 11111 12357899999999877666
Q ss_pred HHhhhccCCEEEEEEeCCChhhHHHHHHH-HHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHH----HHHhhCCCccccCC
Q 029453 81 WKDYYAKVDAVVYLIDAYDKERFSESKRE-LDALLSDEALADVPFLILGNKIDIPYAASEDE----LRYHMGLTNFTTGK 155 (193)
Q Consensus 81 ~~~~~~~~d~ii~v~d~~~~~~~~~~~~~-~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~----~~~~~~~~~~~~~~ 155 (193)
....-.-.|..++|+|+..+-.-+...-. +.++ .....++|+||+|..++..... ....+....-
T Consensus 87 iiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~------~c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe---- 156 (522)
T KOG0461|consen 87 IIGGAQIIDLMILVIDVQKGKQTQTAECLIIGEL------LCKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLE---- 156 (522)
T ss_pred HHhhhheeeeeeEEEehhcccccccchhhhhhhh------hccceEEEEeccccccchhhhhHHHHHHHHHHHHHH----
Confidence 65555668999999999876433333322 2222 2455788899999875533332 2222221110
Q ss_pred CcccCCCCCCccEEEEEEeeecC----CChhHHHHhhhhhc
Q 029453 156 GNVNLDNTNVRPLEVFMCSIVRK----MGYGEGFKWLSQYI 192 (193)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~Sa~~~----~gi~~~~~~i~~~l 192 (193)
+..+....+++++||+.| +++.++.+.|.+++
T Consensus 157 -----~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~i 192 (522)
T KOG0461|consen 157 -----STGFDGNSPIVEVSAADGYFKEEMIQELKEALESRI 192 (522)
T ss_pred -----hcCcCCCCceeEEecCCCccchhHHHHHHHHHHHhh
Confidence 011235589999999999 78999998887654
No 287
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=99.47 E-value=9e-14 Score=100.70 Aligned_cols=154 Identities=19% Similarity=0.171 Sum_probs=94.1
Q ss_pred CCCCcccEEEEEcCCCCCHHHHHHHHhcC-----Ccc------ccCC-CC---------------CcceeEEE-------
Q 029453 15 GLWQKEAKILFLGLDNSGKTTLLHMLKDE-----RLV------QHQP-TQ---------------YPTSEELS------- 60 (193)
Q Consensus 15 ~~~~~~~~i~i~G~~~~GKssl~~~l~~~-----~~~------~~~~-t~---------------~~~~~~~~------- 60 (193)
+...+.+.|+|.|+||+|||||++.+... ... +.+| |. .+. ..++
T Consensus 24 ~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~-vfIRS~atRG~ 102 (266)
T PF03308_consen 24 PHTGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPG-VFIRSMATRGS 102 (266)
T ss_dssp GGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTT-EEEEEE---SS
T ss_pred hhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCC-EEEeecCcCCC
Confidence 34557889999999999999999998411 100 1111 11 011 1111
Q ss_pred ----------------eCCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcE
Q 029453 61 ----------------IGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPF 124 (193)
Q Consensus 61 ----------------~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pv 124 (193)
..++++.+++|.|..+..- ....-+|.+++|+-..-.+.++.+..-+.++. +
T Consensus 103 lGGls~~t~~~v~ll~aaG~D~IiiETVGvGQsE~---~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEia------D--- 170 (266)
T PF03308_consen 103 LGGLSRATRDAVRLLDAAGFDVIIIETVGVGQSEV---DIADMADTVVLVLVPGLGDEIQAIKAGIMEIA------D--- 170 (266)
T ss_dssp HHHHHHHHHHHHHHHHHTT-SEEEEEEESSSTHHH---HHHTTSSEEEEEEESSTCCCCCTB-TTHHHH-------S---
T ss_pred CCCccHhHHHHHHHHHHcCCCEEEEeCCCCCccHH---HHHHhcCeEEEEecCCCccHHHHHhhhhhhhc------c---
Confidence 1268899999987543332 22455999999999988877777777777773 2
Q ss_pred EEEeeCCCCCC-CCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeeecCCChhHHHHhhhhh
Q 029453 125 LILGNKIDIPY-AASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQY 191 (193)
Q Consensus 125 iiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~ 191 (193)
++|+||+|.+. .....+++..+....- ....+..+++.+||.++.|++++++.|.++
T Consensus 171 i~vVNKaD~~gA~~~~~~l~~~l~l~~~----------~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~ 228 (266)
T PF03308_consen 171 IFVVNKADRPGADRTVRDLRSMLHLLRE----------REDGWRPPVLKTSALEGEGIDELWEAIDEH 228 (266)
T ss_dssp EEEEE--SHHHHHHHHHHHHHHHHHCST----------SCTSB--EEEEEBTTTTBSHHHHHHHHHHH
T ss_pred EEEEeCCChHHHHHHHHHHHHHHhhccc----------cccCCCCCEEEEEeCCCCCHHHHHHHHHHH
Confidence 89999999652 1223344444443320 012256799999999999999999999764
No 288
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.45 E-value=3.6e-12 Score=96.71 Aligned_cols=134 Identities=18% Similarity=0.292 Sum_probs=95.6
Q ss_pred CCCcceeEEEeCCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCC----------hhhHHHHHHHHHHHHhCCCCC
Q 029453 51 TQYPTSEELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYD----------KERFSESKRELDALLSDEALA 120 (193)
Q Consensus 51 t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~ 120 (193)
|.|.....+.+.+..+.++|.|||...+.-|.+++.+++++++|++.++ ...+.+....+..+.+...-.
T Consensus 182 T~GI~e~~F~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~ 261 (354)
T KOG0082|consen 182 TTGIVEVEFTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFA 261 (354)
T ss_pred cCCeeEEEEEeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccc
Confidence 5566777888899999999999999999999999999999999999984 244677788888898888888
Q ss_pred CCcEEEEeeCCCCCCC-----------------CCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeeecCCChhH
Q 029453 121 DVPFLILGNKIDIPYA-----------------ASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGE 183 (193)
Q Consensus 121 ~~pviiv~nK~Dl~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 183 (193)
+.++++.+||.|+..+ ...++........+ +... .......-+..+.|.+-.+|+.
T Consensus 262 ~tsiiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF-~~l~------~~~~k~iy~h~T~AtDT~nv~~ 334 (354)
T KOG0082|consen 262 NTSIILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKF-EELN------KNKDKKIYVHFTCATDTQNVQF 334 (354)
T ss_pred cCcEEEEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHH-HHHh------cccCCcceEEEEeeccHHHHHH
Confidence 9999999999998411 11111111111111 1100 0011334556668888889999
Q ss_pred HHHhhhhh
Q 029453 184 GFKWLSQY 191 (193)
Q Consensus 184 ~~~~i~~~ 191 (193)
+|....+.
T Consensus 335 vf~av~d~ 342 (354)
T KOG0082|consen 335 VFDAVTDT 342 (354)
T ss_pred HHHHHHHH
Confidence 99887654
No 289
>PTZ00416 elongation factor 2; Provisional
Probab=99.45 E-value=1.6e-12 Score=110.41 Aligned_cols=113 Identities=16% Similarity=0.117 Sum_probs=78.2
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccc------------c---CC----CCCcceeEEEeC----------CeEEE
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQ------------H---QP----TQYPTSEELSIG----------KIKFK 67 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~------------~---~~----t~~~~~~~~~~~----------~~~~~ 67 (193)
.++--+|+++|+.++|||||++++....-.. . +. |.......+.+. +..+.
T Consensus 16 ~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~ 95 (836)
T PTZ00416 16 PDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLIN 95 (836)
T ss_pred ccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEE
Confidence 4455599999999999999999997532110 0 00 111111233333 46789
Q ss_pred EEEcCChhhhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC
Q 029453 68 AFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIP 134 (193)
Q Consensus 68 ~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~ 134 (193)
++||||+.++.......+..+|++|+|+|+.++-..+ ....+..+.. .++|+++++||+|+.
T Consensus 96 liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~-t~~~~~~~~~----~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 96 LIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQ-TETVLRQALQ----ERIRPVLFINKVDRA 157 (836)
T ss_pred EEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCcc-HHHHHHHHHH----cCCCEEEEEEChhhh
Confidence 9999999998887788889999999999998752222 2233333332 368999999999986
No 290
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.44 E-value=1.1e-12 Score=100.83 Aligned_cols=154 Identities=17% Similarity=0.009 Sum_probs=110.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccc--cC----CCCCcceeEEEeCCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEE
Q 029453 22 KILFLGLDNSGKTTLLHMLKDERLVQ--HQ----PTQYPTSEELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLI 95 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~~~~~--~~----~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 95 (193)
-|+..|+-.-|||||+..+.+..... .. .|.+........++....++|.|||+++-..+...+...|..++|+
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alLvV 81 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLVV 81 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEEEE
Confidence 47788999999999999998776542 11 1444455666667789999999999999988888888999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEee
Q 029453 96 DAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSI 175 (193)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 175 (193)
|+++. +.........++... .....++|+||+|.......++..+..-... .....+++.+|+
T Consensus 82 ~~deG--l~~qtgEhL~iLdll--gi~~giivltk~D~~d~~r~e~~i~~Il~~l-------------~l~~~~i~~~s~ 144 (447)
T COG3276 82 AADEG--LMAQTGEHLLILDLL--GIKNGIIVLTKADRVDEARIEQKIKQILADL-------------SLANAKIFKTSA 144 (447)
T ss_pred eCccC--cchhhHHHHHHHHhc--CCCceEEEEeccccccHHHHHHHHHHHHhhc-------------cccccccccccc
Confidence 99765 333333344444432 2344699999999985544444333322211 024567899999
Q ss_pred ecCCChhHHHHhhhhhc
Q 029453 176 VRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 176 ~~~~gi~~~~~~i~~~l 192 (193)
++|.|++++.+.|.+..
T Consensus 145 ~~g~GI~~Lk~~l~~L~ 161 (447)
T COG3276 145 KTGRGIEELKNELIDLL 161 (447)
T ss_pred ccCCCHHHHHHHHHHhh
Confidence 99999999999998754
No 291
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.44 E-value=2e-12 Score=110.08 Aligned_cols=114 Identities=17% Similarity=0.098 Sum_probs=79.4
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHHhcCCcc--c----------c-------CCCCCcceeEEEe---------------
Q 029453 16 LWQKEAKILFLGLDNSGKTTLLHMLKDERLV--Q----------H-------QPTQYPTSEELSI--------------- 61 (193)
Q Consensus 16 ~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~--~----------~-------~~t~~~~~~~~~~--------------- 61 (193)
..++--+|+++|+.++|||||++++....-. . . ..|.......+.+
T Consensus 15 ~~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~ 94 (843)
T PLN00116 15 KKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERD 94 (843)
T ss_pred CccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccC
Confidence 4555669999999999999999998643311 0 0 0011111222333
Q ss_pred -CCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC
Q 029453 62 -GKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIP 134 (193)
Q Consensus 62 -~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~ 134 (193)
.+..+.++|||||..|.......+..+|++|+|+|+.++-..+. ...+..... .++|+++++||+|+.
T Consensus 95 ~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t-~~~~~~~~~----~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 95 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT-ETVLRQALG----ERIRPVLTVNKMDRC 163 (843)
T ss_pred CCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccH-HHHHHHHHH----CCCCEEEEEECCccc
Confidence 25678999999999998888888899999999999987632222 223333332 478999999999987
No 292
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.44 E-value=1.1e-12 Score=101.38 Aligned_cols=159 Identities=18% Similarity=0.215 Sum_probs=105.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC--ccccCC-------------CCCc----ceeEEEeCCeEEEEEEcCChhhhHHhHH
Q 029453 22 KILFLGLDNSGKTTLLHMLKDER--LVQHQP-------------TQYP----TSEELSIGKIKFKAFDLGGHQMARRVWK 82 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~~--~~~~~~-------------t~~~----~~~~~~~~~~~~~~~D~~g~~~~~~~~~ 82 (193)
+|+|+.+..-|||||+..+.... +..... ..+. .-..+.+++..+.++|||||..|....+
T Consensus 7 NIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGEVE 86 (603)
T COG1217 7 NIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGEVE 86 (603)
T ss_pred eeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccchhh
Confidence 79999999999999999987433 221111 1111 1224567889999999999999998888
Q ss_pred hhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCC
Q 029453 83 DYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDN 162 (193)
Q Consensus 83 ~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (193)
..++=+|++++++|+.++. +-.-.-.+...+. .+.+.|+|+||+|.+.+...+-+.+.+.+.. +-+...+.
T Consensus 87 Rvl~MVDgvlLlVDA~EGp-MPQTrFVlkKAl~----~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~-~L~A~deQ--- 157 (603)
T COG1217 87 RVLSMVDGVLLLVDASEGP-MPQTRFVLKKALA----LGLKPIVVINKIDRPDARPDEVVDEVFDLFV-ELGATDEQ--- 157 (603)
T ss_pred hhhhhcceEEEEEEcccCC-CCchhhhHHHHHH----cCCCcEEEEeCCCCCCCCHHHHHHHHHHHHH-HhCCChhh---
Confidence 8899999999999998753 1122223333333 3777899999999975444333333332221 11111111
Q ss_pred CCCccEEEEEEeeecCC----------ChhHHHHhhhhhc
Q 029453 163 TNVRPLEVFMCSIVRKM----------GYGEGFKWLSQYI 192 (193)
Q Consensus 163 ~~~~~~~~~~~Sa~~~~----------gi~~~~~~i~~~l 192 (193)
-..+++..|+..|. ++.-+|+.|.+.+
T Consensus 158 ---LdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hv 194 (603)
T COG1217 158 ---LDFPIVYASARNGTASLDPEDEADDMAPLFETILDHV 194 (603)
T ss_pred ---CCCcEEEeeccCceeccCccccccchhHHHHHHHHhC
Confidence 34689999988775 6777888877654
No 293
>PTZ00258 GTP-binding protein; Provisional
Probab=99.43 E-value=8.8e-12 Score=96.68 Aligned_cols=85 Identities=21% Similarity=0.342 Sum_probs=60.5
Q ss_pred hCCCCcccEEEEEcCCCCCHHHHHHHHhcCCcc-ccCC--CCCcceeEEEeCC-----------------eEEEEEEcCC
Q 029453 14 LGLWQKEAKILFLGLDNSGKTTLLHMLKDERLV-QHQP--TQYPTSEELSIGK-----------------IKFKAFDLGG 73 (193)
Q Consensus 14 ~~~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~-~~~~--t~~~~~~~~~~~~-----------------~~~~~~D~~g 73 (193)
...-...++|+++|.||||||||+|.+.+.... ...| |..++...+.+.+ ..+.++|+||
T Consensus 15 ~~~~~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpG 94 (390)
T PTZ00258 15 LGRPGNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAG 94 (390)
T ss_pred hccCCCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCC
Confidence 334467789999999999999999999776643 2233 5566766665542 3489999999
Q ss_pred hhh-------hHHhHHhhhccCCEEEEEEeCC
Q 029453 74 HQM-------ARRVWKDYYAKVDAVVYLIDAY 98 (193)
Q Consensus 74 ~~~-------~~~~~~~~~~~~d~ii~v~d~~ 98 (193)
... ........++++|++++|+|..
T Consensus 95 Lv~ga~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 95 LVKGASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred cCcCCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 432 1223334567899999999983
No 294
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.43 E-value=1.3e-12 Score=97.73 Aligned_cols=151 Identities=17% Similarity=0.084 Sum_probs=98.2
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCcccc----------C---C-----------------------CCCcceeEEEe
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQH----------Q---P-----------------------TQYPTSEELSI 61 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~----------~---~-----------------------t~~~~~~~~~~ 61 (193)
+..+|++..|...=|||||+-+|..+...-. + . |.+.....+.-
T Consensus 4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT 83 (431)
T COG2895 4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST 83 (431)
T ss_pred ccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc
Confidence 4567999999999999999999975542210 0 0 11112223344
Q ss_pred CCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCH
Q 029453 62 GKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY--AASE 139 (193)
Q Consensus 62 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~--~~~~ 139 (193)
.++.|.+-|||||++|.+-+...-+.||++|+++|+..+ +.+.......+.... .-..+++..||+||.. +..-
T Consensus 84 ~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~G--vl~QTrRHs~I~sLL--GIrhvvvAVNKmDLvdy~e~~F 159 (431)
T COG2895 84 EKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKG--VLEQTRRHSFIASLL--GIRHVVVAVNKMDLVDYSEEVF 159 (431)
T ss_pred ccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchh--hHHHhHHHHHHHHHh--CCcEEEEEEeeecccccCHHHH
Confidence 678999999999999999888888899999999999654 444444444443332 2356889999999983 2222
Q ss_pred HHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeeecCCChh
Q 029453 140 DELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYG 182 (193)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 182 (193)
+++...+.... . +-......++|+||..|.|+-
T Consensus 160 ~~I~~dy~~fa--~--------~L~~~~~~~IPiSAl~GDNV~ 192 (431)
T COG2895 160 EAIVADYLAFA--A--------QLGLKDVRFIPISALLGDNVV 192 (431)
T ss_pred HHHHHHHHHHH--H--------HcCCCcceEEechhccCCccc
Confidence 23222222111 0 001133589999999999875
No 295
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.42 E-value=8.8e-12 Score=90.06 Aligned_cols=119 Identities=17% Similarity=0.080 Sum_probs=74.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccccC-----CCCCcceeEEEeCCeEEEEEEcCChh-------hhHHhH----Hhh
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLVQHQ-----PTQYPTSEELSIGKIKFKAFDLGGHQ-------MARRVW----KDY 84 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~-----~t~~~~~~~~~~~~~~~~~~D~~g~~-------~~~~~~----~~~ 84 (193)
.+|+++|.+||||||++|.+++....... .|...........+..+.++||||.. +..... ...
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~ 80 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLC 80 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhc
Confidence 48999999999999999999988865332 25556666678899999999999922 111111 122
Q ss_pred hccCCEEEEEEeCCChh-hHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHH
Q 029453 85 YAKVDAVVYLIDAYDKE-RFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDE 141 (193)
Q Consensus 85 ~~~~d~ii~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~ 141 (193)
....+++++|++..... .-......+..++... .-..++||+|..|.......++
T Consensus 81 ~~g~ha~llVi~~~r~t~~~~~~l~~l~~~FG~~--~~k~~ivvfT~~d~~~~~~~~~ 136 (212)
T PF04548_consen 81 SPGPHAFLLVIPLGRFTEEDREVLELLQEIFGEE--IWKHTIVVFTHADELEDDSLED 136 (212)
T ss_dssp TT-ESEEEEEEETTB-SHHHHHHHHHHHHHHCGG--GGGGEEEEEEEGGGGTTTTHHH
T ss_pred cCCCeEEEEEEecCcchHHHHHHHHHHHHHccHH--HHhHhhHHhhhccccccccHHH
Confidence 34689999999998431 1123334455554321 1256899999999876555444
No 296
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.40 E-value=2.6e-12 Score=100.07 Aligned_cols=160 Identities=16% Similarity=0.118 Sum_probs=103.7
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCcc-ccCC--CCCcceeEEEeCCeEEEEEEcCChhhh----H-----HhHHhh
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLV-QHQP--TQYPTSEELSIGKIKFKAFDLGGHQMA----R-----RVWKDY 84 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~----~-----~~~~~~ 84 (193)
.-+.-.+++.|.|++|||||+|.+...... ..++ |...-.+.+.+.-..+..+||||.-.. . ....+.
T Consensus 165 Dp~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IEmqsITAL 244 (620)
T KOG1490|consen 165 DPNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIITAL 244 (620)
T ss_pred CCCcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhhheeeeeecCCccccCcchhhhhHHHHHHHHHH
Confidence 346678999999999999999998766644 3333 333344556666678889999993211 0 011122
Q ss_pred hccCCEEEEEEeCCC--hhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCC
Q 029453 85 YAKVDAVVYLIDAYD--KERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDN 162 (193)
Q Consensus 85 ~~~~d~ii~v~d~~~--~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (193)
-+-..+++|++|.+. +.++......+.++--.+ .++|+|+|+||+|..+.....+-.+.+-.....
T Consensus 245 AHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLF--aNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~---------- 312 (620)
T KOG1490|consen 245 AHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLF--ANKVTILVLNKIDAMRPEDLDQKNQELLQTIID---------- 312 (620)
T ss_pred HHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHh--cCCceEEEeecccccCccccCHHHHHHHHHHHh----------
Confidence 244678999999986 345555556666553222 689999999999998555544422222111100
Q ss_pred CCCccEEEEEEeeecCCChhHHHHhhhh
Q 029453 163 TNVRPLEVFMCSIVRKMGYGEGFKWLSQ 190 (193)
Q Consensus 163 ~~~~~~~~~~~Sa~~~~gi~~~~~~i~~ 190 (193)
....+++.+|..+.+|+.++...-++
T Consensus 313 --~~~v~v~~tS~~~eegVm~Vrt~ACe 338 (620)
T KOG1490|consen 313 --DGNVKVVQTSCVQEEGVMDVRTTACE 338 (620)
T ss_pred --ccCceEEEecccchhceeeHHHHHHH
Confidence 12368999999999999988765443
No 297
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.39 E-value=7.4e-13 Score=95.39 Aligned_cols=148 Identities=18% Similarity=0.202 Sum_probs=82.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCcc--c-----cCC--CC--------CcceeEEE--------------------e
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERLV--Q-----HQP--TQ--------YPTSEELS--------------------I 61 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~~--~-----~~~--t~--------~~~~~~~~--------------------~ 61 (193)
.-..|+|+|+.|||||||++++...... . ... .. +.....+. .
T Consensus 21 ~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~~~~ 100 (207)
T TIGR00073 21 GLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALEDLPL 100 (207)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHHhcc
Confidence 4678999999999999999998643110 0 000 00 00000000 0
Q ss_pred CCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCC--CH
Q 029453 62 GKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAA--SE 139 (193)
Q Consensus 62 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~--~~ 139 (193)
.+..+.++++.|.-.... .+--..+..+.|+|+.+.+... .. .... ...|.++++||+|+.... ..
T Consensus 101 ~~~d~IiIEt~G~l~~~~---~~~~~~~~~i~Vvd~~~~d~~~--~~-~~~~------~~~a~iiv~NK~Dl~~~~~~~~ 168 (207)
T TIGR00073 101 DDIDLLFIENVGNLVCPA---DFDLGEHMRVVLLSVTEGDDKP--LK-YPGM------FKEADLIVINKADLAEAVGFDV 168 (207)
T ss_pred CCCCEEEEecCCCcCCCc---ccccccCeEEEEEecCcccchh--hh-hHhH------HhhCCEEEEEHHHccccchhhH
Confidence 134566667766210000 0111234555677776543211 11 1111 246789999999997432 23
Q ss_pred HHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeeecCCChhHHHHhhhhhcC
Q 029453 140 DELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYIK 193 (193)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l~ 193 (193)
.++...+.... +..+++++||++|.|++++++|+.++.+
T Consensus 169 ~~~~~~l~~~~---------------~~~~i~~~Sa~~g~gv~~l~~~i~~~~~ 207 (207)
T TIGR00073 169 EKMKADAKKIN---------------PEAEIILMSLKTGEGLDEWLEFLEGQVK 207 (207)
T ss_pred HHHHHHHHHhC---------------CCCCEEEEECCCCCCHHHHHHHHHHhhC
Confidence 33333332211 2357999999999999999999988653
No 298
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.38 E-value=3.9e-12 Score=100.62 Aligned_cols=159 Identities=16% Similarity=0.072 Sum_probs=100.7
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCc--------------------c-c---------cCC----CCCcceeEEEeC
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERL--------------------V-Q---------HQP----TQYPTSEELSIG 62 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~--------------------~-~---------~~~----t~~~~~~~~~~~ 62 (193)
.+..+.++++|..++|||||+.+++.+-- . . .+. |.......++-.
T Consensus 174 ~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~ 253 (603)
T KOG0458|consen 174 PKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESK 253 (603)
T ss_pred CccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecC
Confidence 44678999999999999999999852210 0 0 000 112223334445
Q ss_pred CeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCChh---h--HHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCC
Q 029453 63 KIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKE---R--FSESKRELDALLSDEALADVPFLILGNKIDIPYAA 137 (193)
Q Consensus 63 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~---~--~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~ 137 (193)
...++++|+|||..|..-+......+|++++|+|++..+ . ..+....+..+++..+ -..+++++||+|+....
T Consensus 254 ~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lg--i~qlivaiNKmD~V~Ws 331 (603)
T KOG0458|consen 254 SKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLG--ISQLIVAINKMDLVSWS 331 (603)
T ss_pred ceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcC--cceEEEEeecccccCcc
Confidence 578999999999999887777778899999999998531 1 2334556666665543 35689999999997322
Q ss_pred C--HHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeeecCCChhHH
Q 029453 138 S--EDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEG 184 (193)
Q Consensus 138 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~ 184 (193)
. .+++...++-..-+.. ...-..+.++|||+.+|+|+-..
T Consensus 332 q~RF~eIk~~l~~fL~~~~-------gf~es~v~FIPiSGl~GeNL~k~ 373 (603)
T KOG0458|consen 332 QDRFEEIKNKLSSFLKESC-------GFKESSVKFIPISGLSGENLIKI 373 (603)
T ss_pred HHHHHHHHHHHHHHHHHhc-------CcccCCcceEecccccCCccccc
Confidence 2 2233333221110000 00013468999999999987543
No 299
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.37 E-value=2.1e-11 Score=92.59 Aligned_cols=109 Identities=15% Similarity=0.064 Sum_probs=65.4
Q ss_pred CeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHH
Q 029453 63 KIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDEL 142 (193)
Q Consensus 63 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~ 142 (193)
+.++.++||+|..... ....+.+|.++++.+.... .++......+ ..+|.++++||+|+.........
T Consensus 126 g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~~~---~el~~~~~~l------~~~~~ivv~NK~Dl~~~~~~~~~ 193 (300)
T TIGR00750 126 GYDVIIVETVGVGQSE---VDIANMADTFVVVTIPGTG---DDLQGIKAGL------MEIADIYVVNKADGEGATNVTIA 193 (300)
T ss_pred CCCEEEEeCCCCchhh---hHHHHhhceEEEEecCCcc---HHHHHHHHHH------hhhccEEEEEcccccchhHHHHH
Confidence 5788999999854222 1245668888888654333 2333333333 35778999999999754332222
Q ss_pred HHhh--CCCccccCCCcccCCCCCCccEEEEEEeeecCCChhHHHHhhhhh
Q 029453 143 RYHM--GLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQY 191 (193)
Q Consensus 143 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~ 191 (193)
...+ ....+.. ....+..+++++||+++.|+++++++|.+.
T Consensus 194 ~~~~~~~l~~l~~--------~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~ 236 (300)
T TIGR00750 194 RLMLALALEEIRR--------REDGWRPPVLTTSAVEGRGIDELWDAIEEH 236 (300)
T ss_pred HHHHHHHHhhccc--------cccCCCCCEEEEEccCCCCHHHHHHHHHHH
Confidence 2111 1111000 000122368999999999999999999764
No 300
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.37 E-value=1.1e-11 Score=104.35 Aligned_cols=113 Identities=19% Similarity=0.112 Sum_probs=76.0
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCcc--c----------cCC-------CCCcceeEEEe----CCeEEEEEEcCC
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLV--Q----------HQP-------TQYPTSEELSI----GKIKFKAFDLGG 73 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~--~----------~~~-------t~~~~~~~~~~----~~~~~~~~D~~g 73 (193)
.++--+|+++|+.++|||||++++....-. . ..+ |.......+.+ .+..+.++||||
T Consensus 17 ~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG 96 (731)
T PRK07560 17 PEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPG 96 (731)
T ss_pred hhcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCC
Confidence 344457999999999999999998643211 0 000 11112222222 357789999999
Q ss_pred hhhhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC
Q 029453 74 HQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIP 134 (193)
Q Consensus 74 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~ 134 (193)
+.++.......+..+|++++|+|+..+-..+ ....+..... .+.|.++++||+|+.
T Consensus 97 ~~df~~~~~~~l~~~D~avlVvda~~g~~~~-t~~~~~~~~~----~~~~~iv~iNK~D~~ 152 (731)
T PRK07560 97 HVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQ-TETVLRQALR----ERVKPVLFINKVDRL 152 (731)
T ss_pred ccChHHHHHHHHHhcCEEEEEEECCCCCCcc-HHHHHHHHHH----cCCCeEEEEECchhh
Confidence 9998887888889999999999998752222 2223333222 256789999999976
No 301
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.28 E-value=7.2e-11 Score=82.18 Aligned_cols=64 Identities=20% Similarity=0.287 Sum_probs=42.8
Q ss_pred eEEEEEEcCChh----hhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCC
Q 029453 64 IKFKAFDLGGHQ----MARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKI 131 (193)
Q Consensus 64 ~~~~~~D~~g~~----~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~ 131 (193)
..+.++||||.. ........+++.+|++++|.+++...+-... ..+...... ....+++|.||.
T Consensus 101 ~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~-~~l~~~~~~---~~~~~i~V~nk~ 168 (168)
T PF00350_consen 101 RNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDM-EFLKQMLDP---DKSRTIFVLNKA 168 (168)
T ss_dssp CSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHH-HHHHHHHTT---TCSSEEEEEE-G
T ss_pred cceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHH-HHHHHHhcC---CCCeEEEEEcCC
Confidence 458899999953 2235667788999999999999986443333 333333333 244589999984
No 302
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=99.28 E-value=3.1e-11 Score=89.64 Aligned_cols=149 Identities=19% Similarity=0.179 Sum_probs=95.9
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCcccc---CCCCCcceeEEEeCC-eEEEEEEcCChh---------hhHHhHHh
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQH---QPTQYPTSEELSIGK-IKFKAFDLGGHQ---------MARRVWKD 83 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~---~~t~~~~~~~~~~~~-~~~~~~D~~g~~---------~~~~~~~~ 83 (193)
......|+++|-.|||||||++++..-..... -.|-+++......++ ..+.+.||.|.- .|.... .
T Consensus 175 ~~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~~vlltDTvGFisdLP~~LvaAF~ATL-e 253 (410)
T KOG0410|consen 175 GESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGNFVLLTDTVGFISDLPIQLVAAFQATL-E 253 (410)
T ss_pred cCCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCcEEEEeechhhhhhCcHHHHHHHHHHH-H
Confidence 45678999999999999999999984332222 225566665555543 456677999832 223322 3
Q ss_pred hhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCc----EEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCccc
Q 029453 84 YYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVP----FLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVN 159 (193)
Q Consensus 84 ~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p----viiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (193)
.+..+|.++.|+|+++|.- +.........++....+..| ++-|-||+|..+.....
T Consensus 254 eVaeadlllHvvDiShP~a-e~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e~------------------- 313 (410)
T KOG0410|consen 254 EVAEADLLLHVVDISHPNA-EEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVEE------------------- 313 (410)
T ss_pred HHhhcceEEEEeecCCccH-HHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccCcc-------------------
Confidence 3567999999999999863 33333333333443333333 55666888865433321
Q ss_pred CCCCCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 160 LDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 160 ~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
+.-..+.+|+.+|+|++++.+.+...+
T Consensus 314 ------E~n~~v~isaltgdgl~el~~a~~~kv 340 (410)
T KOG0410|consen 314 ------EKNLDVGISALTGDGLEELLKAEETKV 340 (410)
T ss_pred ------ccCCccccccccCccHHHHHHHHHHHh
Confidence 111268899999999999999886543
No 303
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.28 E-value=2e-11 Score=86.55 Aligned_cols=121 Identities=18% Similarity=0.341 Sum_probs=81.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCcc----ccCCCCCcceeEEEe-CCeEEEEEEcCChhhhHH-----hHHhhhccC
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERLV----QHQPTQYPTSEELSI-GKIKFKAFDLGGHQMARR-----VWKDYYAKV 88 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~~----~~~~t~~~~~~~~~~-~~~~~~~~D~~g~~~~~~-----~~~~~~~~~ 88 (193)
..-||.++|.+||||||+=..++.+... ...+|.+......++ ++..+.+||++|++.+-. .....+++.
T Consensus 3 ~~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~fmen~~~~q~d~iF~nV 82 (295)
T KOG3886|consen 3 MKKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEEFMENYLSSQEDNIFRNV 82 (295)
T ss_pred ccceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhhheeehhccCCcHHHHHHHHhhcchhhheeh
Confidence 3568999999999999988777755432 222344555555554 458899999999985533 223467889
Q ss_pred CEEEEEEeCCChhhHHH---HHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHH
Q 029453 89 DAVVYLIDAYDKERFSE---SKRELDALLSDEALADVPFLILGNKIDIPYAASEDE 141 (193)
Q Consensus 89 d~ii~v~d~~~~~~~~~---~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~ 141 (193)
+++++|+|+...+-... ..+-+..++ .+-+...+...++|+|+......++
T Consensus 83 ~vli~vFDves~e~~~D~~~yqk~Le~ll--~~SP~AkiF~l~hKmDLv~~d~r~~ 136 (295)
T KOG3886|consen 83 QVLIYVFDVESREMEKDFHYYQKCLEALL--QNSPEAKIFCLLHKMDLVQEDAREL 136 (295)
T ss_pred eeeeeeeeccchhhhhhHHHHHHHHHHHH--hcCCcceEEEEEeechhcccchHHH
Confidence 99999999987542222 222333333 2336788999999999985544443
No 304
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.27 E-value=1.3e-10 Score=94.39 Aligned_cols=117 Identities=16% Similarity=0.086 Sum_probs=72.2
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCccccC----CCCCcceeEEEeCCeEEEEEEcCChhhh----------HHhHHhh
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERLVQHQ----PTQYPTSEELSIGKIKFKAFDLGGHQMA----------RRVWKDY 84 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~----~t~~~~~~~~~~~~~~~~~~D~~g~~~~----------~~~~~~~ 84 (193)
...+|+++|.+|+||||++|.+++....... .|...........+..+.++||||.... ......+
T Consensus 117 fslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~ 196 (763)
T TIGR00993 117 FSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQGVKIRVIDTPGLKSSASDQSKNEKILSSVKKF 196 (763)
T ss_pred cceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECCceEEEEECCCCCccccchHHHHHHHHHHHHH
Confidence 4568999999999999999999987644322 1322223333456788999999995421 1112223
Q ss_pred hc--cCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCC-CCCcEEEEeeCCCCCC
Q 029453 85 YA--KVDAVVYLIDAYDKERFSESKRELDALLSDEAL-ADVPFLILGNKIDIPY 135 (193)
Q Consensus 85 ~~--~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~-~~~pviiv~nK~Dl~~ 135 (193)
+. .+|++++|...+......+....+..+...++. --..+|||+|+.|..+
T Consensus 197 Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 197 IKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP 250 (763)
T ss_pred HhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence 33 479999998775332211222333333222221 1256899999999875
No 305
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.25 E-value=3.5e-11 Score=92.47 Aligned_cols=159 Identities=18% Similarity=0.219 Sum_probs=80.1
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCcc--c---c---CCCCCcceeEEEeCC-eEEEEEEcCChhhhHHhHHh----
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLV--Q---H---QPTQYPTSEELSIGK-IKFKAFDLGGHQMARRVWKD---- 83 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~--~---~---~~t~~~~~~~~~~~~-~~~~~~D~~g~~~~~~~~~~---- 83 (193)
.+..++|+|+|.+|+|||||+|.+.|-... . + +.|..+. .....+ -.+.+||+||..........
T Consensus 32 ~~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~--~Y~~p~~pnv~lWDlPG~gt~~f~~~~Yl~~ 109 (376)
T PF05049_consen 32 DNAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPT--PYPHPKFPNVTLWDLPGIGTPNFPPEEYLKE 109 (376)
T ss_dssp HH--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-E--EEE-SS-TTEEEEEE--GGGSS--HHHHHHH
T ss_pred hcCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCe--eCCCCCCCCCeEEeCCCCCCCCCCHHHHHHH
Confidence 346789999999999999999999653221 1 1 1122222 223333 35889999996533222222
Q ss_pred -hhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC---------CCCCHHHHHHhhCCCcccc
Q 029453 84 -YYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIP---------YAASEDELRYHMGLTNFTT 153 (193)
Q Consensus 84 -~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~---------~~~~~~~~~~~~~~~~~~~ 153 (193)
.+...|.+|++.+- .|...+.++..-... .++|+.+|-||+|.. +.-..+++.+.......+.
T Consensus 110 ~~~~~yD~fiii~s~----rf~~ndv~La~~i~~---~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~ 182 (376)
T PF05049_consen 110 VKFYRYDFFIIISSE----RFTENDVQLAKEIQR---MGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLEN 182 (376)
T ss_dssp TTGGG-SEEEEEESS----S--HHHHHHHHHHHH---TT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHH
T ss_pred ccccccCEEEEEeCC----CCchhhHHHHHHHHH---cCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHH
Confidence 34578988887663 256666555555544 489999999999962 1222223333322222111
Q ss_pred CCCcccCCCCCCccEEEEEEeeecC--CChhHHHHhhhh
Q 029453 154 GKGNVNLDNTNVRPLEVFMCSIVRK--MGYGEGFKWLSQ 190 (193)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~Sa~~~--~gi~~~~~~i~~ 190 (193)
.........++|.+|+.+- +....+.+.|..
T Consensus 183 ------L~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~ 215 (376)
T PF05049_consen 183 ------LQKAGVSEPQVFLVSSFDLSKYDFPKLEETLEK 215 (376)
T ss_dssp ------HHCTT-SS--EEEB-TTTTTSTTHHHHHHHHHH
T ss_pred ------HHHcCCCcCceEEEeCCCcccCChHHHHHHHHH
Confidence 0111234568999997543 456667666654
No 306
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.25 E-value=1e-10 Score=96.77 Aligned_cols=127 Identities=17% Similarity=0.121 Sum_probs=88.1
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCcc-----ccC------------C----CCCcceeEEEeCC-eEEEEEEcCCh
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLV-----QHQ------------P----TQYPTSEELSIGK-IKFKAFDLGGH 74 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~-----~~~------------~----t~~~~~~~~~~~~-~~~~~~D~~g~ 74 (193)
.++--+|+++|+.++||||+..++....-. ... . |.......+.+.+ ..+.++|||||
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGH 86 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGH 86 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCc
Confidence 345558999999999999999998532211 110 0 2222334566774 99999999999
Q ss_pred hhhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC---CCCHHHHHHhhCC
Q 029453 75 QMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY---AASEDELRYHMGL 148 (193)
Q Consensus 75 ~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~---~~~~~~~~~~~~~ 148 (193)
-+|.......+.-+|+++.|+|+...-..+. ...|+...+ .++|.++++||+|... ....+++...+..
T Consensus 87 VDFt~EV~rslrvlDgavvVvdaveGV~~QT-Etv~rqa~~----~~vp~i~fiNKmDR~~a~~~~~~~~l~~~l~~ 158 (697)
T COG0480 87 VDFTIEVERSLRVLDGAVVVVDAVEGVEPQT-ETVWRQADK----YGVPRILFVNKMDRLGADFYLVVEQLKERLGA 158 (697)
T ss_pred cccHHHHHHHHHhhcceEEEEECCCCeeecH-HHHHHHHhh----cCCCeEEEEECccccccChhhhHHHHHHHhCC
Confidence 9999988888999999999999987632222 222333322 5899999999999862 3344456655554
No 307
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=99.23 E-value=1.1e-11 Score=92.29 Aligned_cols=56 Identities=20% Similarity=0.235 Sum_probs=40.7
Q ss_pred CCcEEEEeeCCCCCCCC--CHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeeecCCChhHHHHhhhhh
Q 029453 121 DVPFLILGNKIDIPYAA--SEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQY 191 (193)
Q Consensus 121 ~~pviiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~ 191 (193)
..+-++|+||+|+.+.. ..+++...+.... ...+++++||++|+|++++.+||.++
T Consensus 230 ~~ADIVVLNKiDLl~~~~~dle~~~~~lr~ln---------------p~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 230 AAASLMLLNKVDLLPYLNFDVEKCIACAREVN---------------PEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred hcCcEEEEEhHHcCcccHHHHHHHHHHHHhhC---------------CCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 35669999999997532 3334444443332 34689999999999999999999875
No 308
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.23 E-value=1.2e-10 Score=85.54 Aligned_cols=160 Identities=18% Similarity=0.188 Sum_probs=98.9
Q ss_pred HhCCCCcccEEEEEcCCCCCHHHHHHHHhcC-------Cccc--------cCCCCC--ccee--EEEeCCeEEEEEEcCC
Q 029453 13 SLGLWQKEAKILFLGLDNSGKTTLLHMLKDE-------RLVQ--------HQPTQY--PTSE--ELSIGKIKFKAFDLGG 73 (193)
Q Consensus 13 ~~~~~~~~~~i~i~G~~~~GKssl~~~l~~~-------~~~~--------~~~t~~--~~~~--~~~~~~~~~~~~D~~g 73 (193)
+....+...+|+.+|..+-|||||...+... .+.. .+...+ .+.. ..+-.++.+..+|+||
T Consensus 5 kf~r~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPG 84 (394)
T COG0050 5 KFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPG 84 (394)
T ss_pred hhcCCCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCC
Confidence 3456788999999999999999999887421 1100 111122 2223 3344678899999999
Q ss_pred hhhhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCc-EEEEeeCCCCCCCCCHHH--------HHH
Q 029453 74 HQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVP-FLILGNKIDIPYAASEDE--------LRY 144 (193)
Q Consensus 74 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-viiv~nK~Dl~~~~~~~~--------~~~ 144 (193)
|..|-..+...--+.|..|+|+.+++.. .........+.++ .+.| +++++||+|+..+...-+ +..
T Consensus 85 HaDYvKNMItgAaqmDgAILVVsA~dGp--mPqTrEHiLlarq---vGvp~ivvflnK~Dmvdd~ellelVemEvreLLs 159 (394)
T COG0050 85 HADYVKNMITGAAQMDGAILVVAATDGP--MPQTREHILLARQ---VGVPYIVVFLNKVDMVDDEELLELVEMEVRELLS 159 (394)
T ss_pred hHHHHHHHhhhHHhcCccEEEEEcCCCC--CCcchhhhhhhhh---cCCcEEEEEEecccccCcHHHHHHHHHHHHHHHH
Confidence 9988776666566789999999999852 1122222223233 3554 667779999985433322 333
Q ss_pred hhCCCccccCCCcccCCCCCCccEEEEEEeeecC--------CChhHHHHhhhhhc
Q 029453 145 HMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRK--------MGYGEGFKWLSQYI 192 (193)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~--------~gi~~~~~~i~~~l 192 (193)
.++.+- ...+++..||..- ..+.++++.+.+++
T Consensus 160 ~y~f~g---------------d~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yi 200 (394)
T COG0050 160 EYGFPG---------------DDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYI 200 (394)
T ss_pred HcCCCC---------------CCcceeechhhhhhcCCcchHHHHHHHHHHHHhcC
Confidence 333332 3457777776432 23567777666554
No 309
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.23 E-value=6.5e-11 Score=91.12 Aligned_cols=127 Identities=19% Similarity=0.222 Sum_probs=87.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHHh--cCCccc----------cCC---------CCC----cceeEEEeCCeEEEEEEcCC
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLK--DERLVQ----------HQP---------TQY----PTSEELSIGKIKFKAFDLGG 73 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~--~~~~~~----------~~~---------t~~----~~~~~~~~~~~~~~~~D~~g 73 (193)
++=..+|+-.|.+|||||-.++. ++.... ... .++ ...-.+.+.++.+.+.||||
T Consensus 11 rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPG 90 (528)
T COG4108 11 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPG 90 (528)
T ss_pred hhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCC
Confidence 45578999999999999999974 221110 000 111 12335678899999999999
Q ss_pred hhhhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC---CCHHHHHHhhCCCc
Q 029453 74 HQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYA---ASEDELRYHMGLTN 150 (193)
Q Consensus 74 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~---~~~~~~~~~~~~~~ 150 (193)
|+.|..=.-.-+..+|+.++|+|+..+ ++.....+.++.+. .++|++-.+||.|..-. +-.+|+++.+++..
T Consensus 91 HeDFSEDTYRtLtAvDsAvMVIDaAKG--iE~qT~KLfeVcrl---R~iPI~TFiNKlDR~~rdP~ELLdEiE~~L~i~~ 165 (528)
T COG4108 91 HEDFSEDTYRTLTAVDSAVMVIDAAKG--IEPQTLKLFEVCRL---RDIPIFTFINKLDREGRDPLELLDEIEEELGIQC 165 (528)
T ss_pred ccccchhHHHHHHhhheeeEEEecccC--ccHHHHHHHHHHhh---cCCceEEEeeccccccCChHHHHHHHHHHhCcce
Confidence 998866544556779999999999876 44444444444443 69999999999997622 33345777776544
No 310
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.22 E-value=6.3e-10 Score=86.00 Aligned_cols=120 Identities=22% Similarity=0.238 Sum_probs=74.4
Q ss_pred HHHHhCCCCcccEEEEEcCCCCCHHHHHHHHhcC----Ccc-------------cc--C---CCCCcce---eEEEe--C
Q 029453 10 ILVSLGLWQKEAKILFLGLDNSGKTTLLHMLKDE----RLV-------------QH--Q---PTQYPTS---EELSI--G 62 (193)
Q Consensus 10 ~~~~~~~~~~~~~i~i~G~~~~GKssl~~~l~~~----~~~-------------~~--~---~t~~~~~---~~~~~--~ 62 (193)
+..=..+..-++-|+++|+.++|||||+|+|.+. ... +. . .|.+|.. ..++. .
T Consensus 7 ykDIa~RT~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~ 86 (492)
T TIGR02836 7 YKDIAERTQGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININ 86 (492)
T ss_pred HHHHHHHhCCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEecc
Confidence 3334456778899999999999999999999866 221 11 1 1333333 22222 1
Q ss_pred ---CeEEEEEEcCChh--------hhHH---------------------hHHhhhc-cCCEEEEEE-eCC----ChhhHH
Q 029453 63 ---KIKFKAFDLGGHQ--------MARR---------------------VWKDYYA-KVDAVVYLI-DAY----DKERFS 104 (193)
Q Consensus 63 ---~~~~~~~D~~g~~--------~~~~---------------------~~~~~~~-~~d~ii~v~-d~~----~~~~~~ 104 (193)
..++.++||+|.. +... -....+. .++..++|. |.+ .++.+.
T Consensus 87 ~~~~~~VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~ 166 (492)
T TIGR02836 87 EGTKFKVRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYV 166 (492)
T ss_pred CCCcccEEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccch
Confidence 3689999999822 1111 0223344 789999998 775 112233
Q ss_pred HH-HHHHHHHHhCCCCCCCcEEEEeeCCCC
Q 029453 105 ES-KRELDALLSDEALADVPFLILGNKIDI 133 (193)
Q Consensus 105 ~~-~~~~~~~~~~~~~~~~pviiv~nK~Dl 133 (193)
.. ..++..+. . .++|.++++||.|-
T Consensus 167 ~aEe~~i~eLk-~---~~kPfiivlN~~dp 192 (492)
T TIGR02836 167 EAEERVIEELK-E---LNKPFIILLNSTHP 192 (492)
T ss_pred HHHHHHHHHHH-h---cCCCEEEEEECcCC
Confidence 33 34444443 3 48999999999994
No 311
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.22 E-value=4.3e-11 Score=88.21 Aligned_cols=96 Identities=20% Similarity=0.137 Sum_probs=70.2
Q ss_pred hhhHHhHHhhhccCCEEEEEEeCCChh-hHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHH-HHHHhhCCCccc
Q 029453 75 QMARRVWKDYYAKVDAVVYLIDAYDKE-RFSESKRELDALLSDEALADVPFLILGNKIDIPYAASED-ELRYHMGLTNFT 152 (193)
Q Consensus 75 ~~~~~~~~~~~~~~d~ii~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~-~~~~~~~~~~~~ 152 (193)
+++..+...++.++|++++|+|+.++. ++..+..|+..+.. .++|+++|+||+||....... +..+.+..
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~----~~i~~vIV~NK~DL~~~~~~~~~~~~~~~~---- 95 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA----QNIEPIIVLNKIDLLDDEDMEKEQLDIYRN---- 95 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CCCCEEEEEECcccCCCHHHHHHHHHHHHH----
Confidence 455555566788999999999999876 78888888875532 579999999999996432221 22222211
Q ss_pred cCCCcccCCCCCCccEEEEEEeeecCCChhHHHHhhhhh
Q 029453 153 TGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQY 191 (193)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~ 191 (193)
...+++.+||++|.|++++++.+.+.
T Consensus 96 -------------~g~~v~~~SAktg~gi~eLf~~l~~~ 121 (245)
T TIGR00157 96 -------------IGYQVLMTSSKNQDGLKELIEALQNR 121 (245)
T ss_pred -------------CCCeEEEEecCCchhHHHHHhhhcCC
Confidence 12478999999999999999988653
No 312
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.21 E-value=6.7e-10 Score=81.17 Aligned_cols=115 Identities=15% Similarity=0.155 Sum_probs=70.0
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCccccC---CCCCcce--------------------------------------
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQHQ---PTQYPTS-------------------------------------- 56 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~---~t~~~~~-------------------------------------- 56 (193)
-..++++++|+.||||||+++.+.+..+.... .|..+..
T Consensus 24 i~~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 103 (240)
T smart00053 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDRV 103 (240)
T ss_pred CCCCeEEEEcCCCccHHHHHHHHhCCCccccCCCcccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHHh
Confidence 36679999999999999999999876522110 0110000
Q ss_pred -----------eEEE--eC-CeEEEEEEcCChhh-------------hHHhHHhhhcc-CCEEEEEEeCCChhhHHHHHH
Q 029453 57 -----------EELS--IG-KIKFKAFDLGGHQM-------------ARRVWKDYYAK-VDAVVYLIDAYDKERFSESKR 108 (193)
Q Consensus 57 -----------~~~~--~~-~~~~~~~D~~g~~~-------------~~~~~~~~~~~-~d~ii~v~d~~~~~~~~~~~~ 108 (193)
-.++ .. -..+.++||||... ...+...++++ .+.+++|+|+...-.-+....
T Consensus 104 ~~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ 183 (240)
T smart00053 104 TGTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALK 183 (240)
T ss_pred cCCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHH
Confidence 0011 11 15788999999531 23345567774 568999999865311122222
Q ss_pred HHHHHHhCCCCCCCcEEEEeeCCCCCCC
Q 029453 109 ELDALLSDEALADVPFLILGNKIDIPYA 136 (193)
Q Consensus 109 ~~~~~~~~~~~~~~pviiv~nK~Dl~~~ 136 (193)
....+ .. .+.|+++|+||+|+...
T Consensus 184 ia~~l-d~---~~~rti~ViTK~D~~~~ 207 (240)
T smart00053 184 LAKEV-DP---QGERTIGVITKLDLMDE 207 (240)
T ss_pred HHHHH-HH---cCCcEEEEEECCCCCCc
Confidence 22222 22 47899999999999743
No 313
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=99.21 E-value=8.6e-11 Score=81.57 Aligned_cols=79 Identities=14% Similarity=0.153 Sum_probs=50.6
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC--HHHHHHhhCCCccccCCCcccCCCCCCcc
Q 029453 90 AVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAAS--EDELRYHMGLTNFTTGKGNVNLDNTNVRP 167 (193)
Q Consensus 90 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (193)
.-|+|+|++.++.. ..+....+ . ..=++|+||.|+.+... .+...+...... ..
T Consensus 120 ~~v~VidvteGe~~--P~K~gP~i------~-~aDllVInK~DLa~~v~~dlevm~~da~~~n---------------p~ 175 (202)
T COG0378 120 LRVVVIDVTEGEDI--PRKGGPGI------F-KADLLVINKTDLAPYVGADLEVMARDAKEVN---------------PE 175 (202)
T ss_pred eEEEEEECCCCCCC--cccCCCce------e-EeeEEEEehHHhHHHhCccHHHHHHHHHHhC---------------CC
Confidence 78888898876311 11101111 1 13489999999985433 344333333222 44
Q ss_pred EEEEEEeeecCCChhHHHHhhhhhc
Q 029453 168 LEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 168 ~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
.+++.+|+++|+|++++++|+....
T Consensus 176 ~~ii~~n~ktg~G~~~~~~~i~~~~ 200 (202)
T COG0378 176 APIIFTNLKTGEGLDEWLRFIEPQA 200 (202)
T ss_pred CCEEEEeCCCCcCHHHHHHHHHhhc
Confidence 6899999999999999999997643
No 314
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=99.21 E-value=1.5e-10 Score=87.82 Aligned_cols=168 Identities=16% Similarity=0.116 Sum_probs=105.8
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCC----------------CcceeEE--------Ee----------
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQ----------------YPTSEEL--------SI---------- 61 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~----------------~~~~~~~--------~~---------- 61 (193)
....+.++..|+.++|||||.-.+..+.... ...|. ......+ ..
T Consensus 114 ~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~ 193 (527)
T COG5258 114 APEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKA 193 (527)
T ss_pred CCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHh
Confidence 3467889999999999999999987665442 11111 1111111 10
Q ss_pred -----CCeEEEEEEcCChhhhHHhHHhhh--ccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC
Q 029453 62 -----GKIKFKAFDLGGHQMARRVWKDYY--AKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIP 134 (193)
Q Consensus 62 -----~~~~~~~~D~~g~~~~~~~~~~~~--~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~ 134 (193)
...-+.++||.||+.+.+.....+ ++.|..++++.+++. .+.+.+....++.. ...|+++++||+|+.
T Consensus 194 ~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG--~~~~tkEHLgi~~a---~~lPviVvvTK~D~~ 268 (527)
T COG5258 194 AVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDG--VTKMTKEHLGIALA---MELPVIVVVTKIDMV 268 (527)
T ss_pred HhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCC--cchhhhHhhhhhhh---hcCCEEEEEEecccC
Confidence 135688999999999877654433 578999999999887 45555555555444 589999999999998
Q ss_pred CCCCHHHHHHh----hC----CCccccCCC---cccCCCC-CCccEEEEEEeeecCCChhHHHHhhh
Q 029453 135 YAASEDELRYH----MG----LTNFTTGKG---NVNLDNT-NVRPLEVFMCSIVRKMGYGEGFKWLS 189 (193)
Q Consensus 135 ~~~~~~~~~~~----~~----~~~~~~~~~---~~~~~~~-~~~~~~~~~~Sa~~~~gi~~~~~~i~ 189 (193)
++...+...++ +. .+..-.... ....+.. .....+++.+|+.+|+|++-+.+.+.
T Consensus 269 ~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f~ 335 (527)
T COG5258 269 PDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFFL 335 (527)
T ss_pred cHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHHH
Confidence 65544432222 21 111100000 0011111 22368999999999999987776653
No 315
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=99.20 E-value=7.7e-11 Score=92.67 Aligned_cols=134 Identities=19% Similarity=0.339 Sum_probs=93.8
Q ss_pred CcceeEEEe-CCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCC----------hhhHHHHHHHHHHHHhCCCCCC
Q 029453 53 YPTSEELSI-GKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYD----------KERFSESKRELDALLSDEALAD 121 (193)
Q Consensus 53 ~~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~~ 121 (193)
+.....+.+ ++..+.++|.+|+...+.-|.+++.+++++|||++.++ ...+.+....+..+.+.....+
T Consensus 224 Gi~e~~f~~~~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~ 303 (389)
T PF00503_consen 224 GITEIDFNFSGSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKN 303 (389)
T ss_dssp SEEEEEEEE-TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTT
T ss_pred CeeEEEEEeecccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCccccc
Confidence 344556677 88899999999999889999999999999999999863 2457888899999988777789
Q ss_pred CcEEEEeeCCCCC----CCC----------------CHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeeecCCCh
Q 029453 122 VPFLILGNKIDIP----YAA----------------SEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGY 181 (193)
Q Consensus 122 ~pviiv~nK~Dl~----~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 181 (193)
.|+++++||.|+. ... ..+.....+...+...... ....+.+.+..++|.+..++
T Consensus 304 ~~iil~lnK~D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~-----~~~~~~~~~h~t~a~d~~~~ 378 (389)
T PF00503_consen 304 TPIILFLNKIDLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRN-----NSPSRRIYVHFTCATDTENI 378 (389)
T ss_dssp SEEEEEEE-HHHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHST-----TTTCS-EEEEEESTTSHHHH
T ss_pred CceEEeeecHHHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccC-----CCCCcceEEEEeeecccHHH
Confidence 9999999999974 111 1122222222111111000 00005567789999999999
Q ss_pred hHHHHhhhhh
Q 029453 182 GEGFKWLSQY 191 (193)
Q Consensus 182 ~~~~~~i~~~ 191 (193)
..+|+.+.+.
T Consensus 379 ~~v~~~v~~~ 388 (389)
T PF00503_consen 379 RKVFNAVKDI 388 (389)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHhcCc
Confidence 9999988764
No 316
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=99.16 E-value=9.8e-11 Score=85.28 Aligned_cols=165 Identities=19% Similarity=0.147 Sum_probs=96.4
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCcc--ccCCCCCcce-eEEEeCCeEEEEEEcCC----------hhhhHHhHHh
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLV--QHQPTQYPTS-EELSIGKIKFKAFDLGG----------HQMARRVWKD 83 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~--~~~~t~~~~~-~~~~~~~~~~~~~D~~g----------~~~~~~~~~~ 83 (193)
..+.+++++.|.+|+|||||+|.++..+.. ...++.+.+. ...-.-+..+..+|.|| ...+..+...
T Consensus 133 k~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~~~~~~vDlPG~~~a~y~~~~~~d~~~~t~~ 212 (320)
T KOG2486|consen 133 KDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVGKSWYEVDLPGYGRAGYGFELPADWDKFTKS 212 (320)
T ss_pred CCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeeccceEEEEecCCcccccCCccCcchHhHhHHH
Confidence 356789999999999999999999887754 2232333222 11122345788999999 2234444445
Q ss_pred hhc---cCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccC
Q 029453 84 YYA---KVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNL 160 (193)
Q Consensus 84 ~~~---~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (193)
|+- +.-.+.+++|++-+ ++..+.....++.+ .+.|+.+|+||||.....-.--....++....-.+...
T Consensus 213 Y~leR~nLv~~FLLvd~sv~--i~~~D~~~i~~~ge---~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~--- 284 (320)
T KOG2486|consen 213 YLLERENLVRVFLLVDASVP--IQPTDNPEIAWLGE---NNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIR--- 284 (320)
T ss_pred HHHhhhhhheeeeeeeccCC--CCCCChHHHHHHhh---cCCCeEEeeehhhhhhhccccccCccccceeehhhccc---
Confidence 543 33456667788755 34444444445444 58999999999998632211000000111110000000
Q ss_pred CCCCCccEEEEEEeeecCCChhHHHHhhhh
Q 029453 161 DNTNVRPLEVFMCSIVRKMGYGEGFKWLSQ 190 (193)
Q Consensus 161 ~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~ 190 (193)
..+....+++.+|+.++.|++++.-.|.+
T Consensus 285 -~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q 313 (320)
T KOG2486|consen 285 -GVFLVDLPWIYVSSVTSLGRDLLLLHIAQ 313 (320)
T ss_pred -cceeccCCceeeecccccCceeeeeehhh
Confidence 11112346778999999999998776654
No 317
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.16 E-value=3.6e-10 Score=84.73 Aligned_cols=110 Identities=19% Similarity=0.262 Sum_probs=63.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccccCC-----------CCCcce--eEEEeCC--eEEEEEEcCChhhh-------
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDERLVQHQP-----------TQYPTS--EELSIGK--IKFKAFDLGGHQMA------- 77 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~-----------t~~~~~--~~~~~~~--~~~~~~D~~g~~~~------- 77 (193)
.++|.++|.+|+|||||+|.|++........ +..... ..+.-++ ..+.++||||....
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~ 83 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW 83 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence 5899999999999999999999876543210 111111 1222233 57889999993210
Q ss_pred -------HHhHHhhh-------------ccCCEEEEEEeCCChhhHHHHH-HHHHHHHhCCCCCCCcEEEEeeCCCCCC
Q 029453 78 -------RRVWKDYY-------------AKVDAVVYLIDAYDKERFSESK-RELDALLSDEALADVPFLILGNKIDIPY 135 (193)
Q Consensus 78 -------~~~~~~~~-------------~~~d~ii~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~pviiv~nK~Dl~~ 135 (193)
...+..++ .++|+++|.++.+... +...+ ..+..+. ...++|-|+.|+|...
T Consensus 84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~-L~~~Di~~mk~Ls-----~~vNvIPvIaKaD~lt 156 (281)
T PF00735_consen 84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHG-LKPLDIEFMKRLS-----KRVNVIPVIAKADTLT 156 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSS-S-HHHHHHHHHHT-----TTSEEEEEESTGGGS-
T ss_pred HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCcc-chHHHHHHHHHhc-----ccccEEeEEecccccC
Confidence 00111111 1479999999986432 33333 4455552 3578999999999864
No 318
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.13 E-value=5.8e-10 Score=85.76 Aligned_cols=78 Identities=23% Similarity=0.329 Sum_probs=56.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcc-ccCC--CCCcceeEEEeCC-----------------eEEEEEEcCChhh----
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLV-QHQP--TQYPTSEELSIGK-----------------IKFKAFDLGGHQM---- 76 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~-~~~~--t~~~~~~~~~~~~-----------------~~~~~~D~~g~~~---- 76 (193)
++|+++|.||||||||+|++.+.... ...| |..+....+.+.. ..+.++|+||...
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 68999999999999999999987743 2223 5567666655543 2589999999432
Q ss_pred ---hHHhHHhhhccCCEEEEEEeCC
Q 029453 77 ---ARRVWKDYYAKVDAVVYLIDAY 98 (193)
Q Consensus 77 ---~~~~~~~~~~~~d~ii~v~d~~ 98 (193)
........++.+|++++|+|+.
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 1122334567899999999983
No 319
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.11 E-value=4.6e-10 Score=83.58 Aligned_cols=76 Identities=22% Similarity=0.324 Sum_probs=54.6
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCcc-ccCC--CCCcceeEEEeCCe-----------------EEEEEEcCChhh------
Q 029453 23 ILFLGLDNSGKTTLLHMLKDERLV-QHQP--TQYPTSEELSIGKI-----------------KFKAFDLGGHQM------ 76 (193)
Q Consensus 23 i~i~G~~~~GKssl~~~l~~~~~~-~~~~--t~~~~~~~~~~~~~-----------------~~~~~D~~g~~~------ 76 (193)
|+++|.||||||||+|++.+.... ..+| |..+....+.+.+. .+.++|+||...
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 589999999999999999987753 2223 55666666665432 489999999432
Q ss_pred -hHHhHHhhhccCCEEEEEEeCC
Q 029453 77 -ARRVWKDYYAKVDAVVYLIDAY 98 (193)
Q Consensus 77 -~~~~~~~~~~~~d~ii~v~d~~ 98 (193)
........++.+|++++|+|+.
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCc
Confidence 1223334567899999999873
No 320
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.11 E-value=1.2e-10 Score=76.78 Aligned_cols=88 Identities=17% Similarity=0.111 Sum_probs=61.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccccC--CCCCcceeEEEeCCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCC
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLVQHQ--PTQYPTSEELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAY 98 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~ 98 (193)
+|++++|..|+|||+|+.++....+.... +|.+ +........+.++.+++|++..
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~-----------------------~~~~~~~~~~s~~~~~~v~~~~ 57 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG-----------------------IDVYDPTSYESFDVVLQCWRVD 57 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh-----------------------hhhccccccCCCCEEEEEEEcc
Confidence 48999999999999999999766654211 1222 1222233456789999999999
Q ss_pred ChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC
Q 029453 99 DKERFSESKRELDALLSDEALADVPFLILGNKIDIP 134 (193)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~ 134 (193)
+.+++... |...+. .....+.|.++++||.|+.
T Consensus 58 ~~~s~~~~--~~~~i~-~~~k~dl~~~~~~nk~dl~ 90 (124)
T smart00010 58 DRDSADNK--NVPEVL-VGNKSDLPILVGGNRDVLE 90 (124)
T ss_pred CHHHHHHH--hHHHHH-hcCCCCCcEEEEeechhhH
Confidence 98777544 544443 3344578899999999984
No 321
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=99.11 E-value=4.5e-09 Score=78.41 Aligned_cols=159 Identities=15% Similarity=0.177 Sum_probs=97.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeC------CeEEEEEEcCChhhhHHhHHhhhcc---C-
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIG------KIKFKAFDLGGHQMARRVWKDYYAK---V- 88 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~------~~~~~~~D~~g~~~~~~~~~~~~~~---~- 88 (193)
...+|.++|..|+|||||+.++-+.+ ...+..+.....+... ...+..|-+-|+.......+..+.. +
T Consensus 51 sgk~VlvlGdn~sGKtsLi~klqg~e--~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~ae 128 (473)
T KOG3905|consen 51 SGKNVLVLGDNGSGKTSLISKLQGSE--TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAE 128 (473)
T ss_pred CCCeEEEEccCCCchhHHHHHhhccc--ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccc
Confidence 56789999999999999999998766 2333333333333332 2457788888876666665555543 2
Q ss_pred CEEEEEEeCCChhhHHHHHHHHHHHHhC--------------------------------------C-------------
Q 029453 89 DAVVYLIDAYDKERFSESKRELDALLSD--------------------------------------E------------- 117 (193)
Q Consensus 89 d~ii~v~d~~~~~~~~~~~~~~~~~~~~--------------------------------------~------------- 117 (193)
..+|++.|++++..+-+..+.|..++.+ .
T Consensus 129 tlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~~ 208 (473)
T KOG3905|consen 129 TLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEHV 208 (473)
T ss_pred eEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCcccccc
Confidence 4678899999874443322222111110 0
Q ss_pred ----------CCCCCcEEEEeeCCCCCC------CCCHHH---HHHhhCCCccccCCCcccCCCCCCccEEEEEEeeecC
Q 029453 118 ----------ALADVPFLILGNKIDIPY------AASEDE---LRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRK 178 (193)
Q Consensus 118 ----------~~~~~pviiv~nK~Dl~~------~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 178 (193)
..-++|+++|+||||... +...++ +...+....+. .....+.+|++..
T Consensus 209 llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr-------------~GaaLiyTSvKE~ 275 (473)
T KOG3905|consen 209 LLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLR-------------YGAALIYTSVKET 275 (473)
T ss_pred ccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHH-------------cCceeEEeecccc
Confidence 001589999999999841 111111 22222222211 1246799999999
Q ss_pred CChhHHHHhhhhhc
Q 029453 179 MGYGEGFKWLSQYI 192 (193)
Q Consensus 179 ~gi~~~~~~i~~~l 192 (193)
.|++-+..+|..++
T Consensus 276 KNidllyKYivhr~ 289 (473)
T KOG3905|consen 276 KNIDLLYKYIVHRS 289 (473)
T ss_pred cchHHHHHHHHHHh
Confidence 99999999998764
No 322
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.08 E-value=4e-09 Score=83.96 Aligned_cols=129 Identities=18% Similarity=0.217 Sum_probs=88.1
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccccC-CCCC----cceeEEEeCCeEEEEEEcCChhhhHHhHHhhhccCCEE
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQ-PTQY----PTSEELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAV 91 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~-~t~~----~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~i 91 (193)
..+-+++.++|+.+||||.+++.+.++.+.... .+.. .+..........+.+.|.+-. ........- ..||++
T Consensus 422 ~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv~ 499 (625)
T KOG1707|consen 422 DRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDVA 499 (625)
T ss_pred cceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeeeE
Confidence 346789999999999999999999987766422 1221 122222333345666666643 111111111 459999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC-----CCCHHHHHHhhCCCc
Q 029453 92 VYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY-----AASEDELRYHMGLTN 150 (193)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~-----~~~~~~~~~~~~~~~ 150 (193)
.+++|.+++.++......+...... ...|+++|++|+|+.+ ..++++++.++++..
T Consensus 500 ~~~YDsS~p~sf~~~a~v~~~~~~~---~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~ 560 (625)
T KOG1707|consen 500 CLVYDSSNPRSFEYLAEVYNKYFDL---YKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPP 560 (625)
T ss_pred EEecccCCchHHHHHHHHHHHhhhc---cCCceEEEeeccccchhhhccCCChHHHHHhcCCCC
Confidence 9999999998888877766666433 6899999999999973 345567777777666
No 323
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.08 E-value=3.9e-10 Score=77.61 Aligned_cols=94 Identities=18% Similarity=0.183 Sum_probs=60.5
Q ss_pred hHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCC
Q 029453 77 ARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKG 156 (193)
Q Consensus 77 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 156 (193)
++.+..+.+.++|++++|+|+.++..... ..+...+.. .++|+++|+||+|+.+.....++......
T Consensus 2 ~~~~~~~i~~~aD~vl~V~D~~~~~~~~~--~~l~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~-------- 68 (156)
T cd01859 2 WKRLVRRIIKESDVVLEVLDARDPELTRS--RKLERYVLE---LGKKLLIVLNKADLVPKEVLEKWKSIKES-------- 68 (156)
T ss_pred HHHHHHHHHhhCCEEEEEeeCCCCcccCC--HHHHHHHHh---CCCcEEEEEEhHHhCCHHHHHHHHHHHHh--------
Confidence 34566777788999999999987532211 122222222 36899999999998532111111111000
Q ss_pred cccCCCCCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 157 NVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 157 ~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
...+++++||+++.|++++++.|.+.+
T Consensus 69 ---------~~~~~~~iSa~~~~gi~~L~~~l~~~~ 95 (156)
T cd01859 69 ---------EGIPVVYVSAKERLGTKILRRTIKELA 95 (156)
T ss_pred ---------CCCcEEEEEccccccHHHHHHHHHHHH
Confidence 113689999999999999999997653
No 324
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=99.06 E-value=4.1e-10 Score=85.48 Aligned_cols=164 Identities=22% Similarity=0.171 Sum_probs=103.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCcccc-----------------CCC--C-----------------CcceeEEE---
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDERLVQH-----------------QPT--Q-----------------YPTSEELS--- 60 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~~~~~~-----------------~~t--~-----------------~~~~~~~~--- 60 (193)
+.+|+++|+..+|||||+..+..++...- ..| . ++.-..++
T Consensus 133 E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWvk 212 (641)
T KOG0463|consen 133 EARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWVK 212 (641)
T ss_pred eEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCccccee
Confidence 56999999999999999988764433210 000 0 01111111
Q ss_pred ---eCCeEEEEEEcCChhhhHHhHHhhh--ccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC
Q 029453 61 ---IGKIKFKAFDLGGHQMARRVWKDYY--AKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY 135 (193)
Q Consensus 61 ---~~~~~~~~~D~~g~~~~~~~~~~~~--~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~ 135 (193)
....-+.++|+.||++|.......+ +-.|.-++++.++-. +-++.+....+... -..|+.+|.||+|+++
T Consensus 213 Ice~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaG--IiGmTKEHLgLALa---L~VPVfvVVTKIDMCP 287 (641)
T KOG0463|consen 213 ICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAG--IIGMTKEHLGLALA---LHVPVFVVVTKIDMCP 287 (641)
T ss_pred eccccceeEEEEeccchhhhhheeeeccccCCCCceEEEeccccc--ceeccHHhhhhhhh---hcCcEEEEEEeeccCc
Confidence 1235688999999999876443332 347888888888654 34455544444333 4799999999999998
Q ss_pred CCCHHH-------HHHhhCCCcccc-CCCcccC---CCCC--CccEEEEEEeeecCCChhHHHHhh
Q 029453 136 AASEDE-------LRYHMGLTNFTT-GKGNVNL---DNTN--VRPLEVFMCSIVRKMGYGEGFKWL 188 (193)
Q Consensus 136 ~~~~~~-------~~~~~~~~~~~~-~~~~~~~---~~~~--~~~~~~~~~Sa~~~~gi~~~~~~i 188 (193)
+...+| +.+..++..+.- .++...+ +.++ .+.|++|.+|..+|.|++-+..+|
T Consensus 288 ANiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLkmFL 353 (641)
T KOG0463|consen 288 ANILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLKMFL 353 (641)
T ss_pred HHHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHHHHH
Confidence 877776 233333333322 2222111 1222 246899999999999999887765
No 325
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=99.03 E-value=2.5e-09 Score=86.36 Aligned_cols=118 Identities=16% Similarity=0.181 Sum_probs=81.6
Q ss_pred HHhCCCCcccEEEEEcCCCCCHHHHHHHHhcCCccccCC----------------CCCcc----eeEE-----EeCCeEE
Q 029453 12 VSLGLWQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQP----------------TQYPT----SEEL-----SIGKIKF 66 (193)
Q Consensus 12 ~~~~~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~----------------t~~~~----~~~~-----~~~~~~~ 66 (193)
..+.....-.+++++|+-++|||+|+..+....-...++ .++.. ..++ +...+-+
T Consensus 120 ~l~~~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~ 199 (971)
T KOG0468|consen 120 GLMDNPERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLM 199 (971)
T ss_pred HhccCcceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeee
Confidence 344556677899999999999999999997554322111 00111 1111 1124678
Q ss_pred EEEEcCChhhhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC
Q 029453 67 KAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIP 134 (193)
Q Consensus 67 ~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~ 134 (193)
.+.|||||-.|.......+..+|++++++|+.++-.+. -...+..... .+.|+++|+||+|..
T Consensus 200 nilDTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmln-tEr~ikhaiq----~~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 200 NILDTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLN-TERIIKHAIQ----NRLPIVVVINKVDRL 262 (971)
T ss_pred eeecCCCcccchHHHHHHhhhcceEEEEEEcccCceee-HHHHHHHHHh----ccCcEEEEEehhHHH
Confidence 89999999999888888889999999999998764332 2233333332 589999999999963
No 326
>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]
Probab=99.03 E-value=7.3e-10 Score=78.93 Aligned_cols=134 Identities=16% Similarity=0.242 Sum_probs=88.6
Q ss_pred CCCcceeEEEeCCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCC----------ChhhHHHHHHHHHHHHhCCCCC
Q 029453 51 TQYPTSEELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAY----------DKERFSESKRELDALLSDEALA 120 (193)
Q Consensus 51 t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~~~~~~~~~~~~~~~~~~~~ 120 (193)
|.+.....+...+..+.++|.+|+...+.-|-++++++..+++++..+ +.....+....+..++......
T Consensus 186 TTGi~eypfdl~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~ 265 (359)
T KOG0085|consen 186 TTGIIEYPFDLQKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQ 265 (359)
T ss_pred cccceecCcchhhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhcccccc
Confidence 334444455556788999999999988889999999988888877665 3455677777888888777778
Q ss_pred CCcEEEEeeCCCCCCCCCHH-HHHHhhC----------------CCccccCCCcccCCCCCCccEEEEEEeeecCCChhH
Q 029453 121 DVPFLILGNKIDIPYAASED-ELRYHMG----------------LTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGE 183 (193)
Q Consensus 121 ~~pviiv~nK~Dl~~~~~~~-~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 183 (193)
+.+||+.+||.|+..+.... .+...+. +..+... ++ ..-...-...+.|.+-+||..
T Consensus 266 nssVIlFLNKkDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~-nP-----d~dKii~SHfTcATDT~NIRf 339 (359)
T KOG0085|consen 266 NSSVILFLNKKDLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDM-NP-----DSDKIIYSHFTCATDTENIRF 339 (359)
T ss_pred CCceEEEechhhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhh-CC-----CccceeeeeeeecccchhHHH
Confidence 99999999999986332222 2222221 1111110 00 000223345666888899999
Q ss_pred HHHhhhh
Q 029453 184 GFKWLSQ 190 (193)
Q Consensus 184 ~~~~i~~ 190 (193)
+|..+.+
T Consensus 340 VFaaVkD 346 (359)
T KOG0085|consen 340 VFAAVKD 346 (359)
T ss_pred HHHHHHH
Confidence 9987654
No 327
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=99.01 E-value=1.3e-09 Score=75.07 Aligned_cols=89 Identities=20% Similarity=0.239 Sum_probs=58.7
Q ss_pred hhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCC
Q 029453 84 YYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNT 163 (193)
Q Consensus 84 ~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (193)
.++.+|++++|+|+.++. ......+...+... ..++|+++|+||+|+.+.....++...+....
T Consensus 5 ~l~~aD~il~VvD~~~p~--~~~~~~i~~~l~~~-~~~~p~ilVlNKiDl~~~~~~~~~~~~~~~~~------------- 68 (157)
T cd01858 5 VIDSSDVVIQVLDARDPM--GTRCKHVEEYLKKE-KPHKHLIFVLNKCDLVPTWVTARWVKILSKEY------------- 68 (157)
T ss_pred hhhhCCEEEEEEECCCCc--cccCHHHHHHHHhc-cCCCCEEEEEEchhcCCHHHHHHHHHHHhcCC-------------
Confidence 467899999999998862 22223333333221 24589999999999964332223333333221
Q ss_pred CCccEEEEEEeeecCCChhHHHHhhhhh
Q 029453 164 NVRPLEVFMCSIVRKMGYGEGFKWLSQY 191 (193)
Q Consensus 164 ~~~~~~~~~~Sa~~~~gi~~~~~~i~~~ 191 (193)
...++++||+.+.|+++++++|.+.
T Consensus 69 ---~~~~~~iSa~~~~~~~~L~~~l~~~ 93 (157)
T cd01858 69 ---PTIAFHASINNPFGKGSLIQLLRQF 93 (157)
T ss_pred ---cEEEEEeeccccccHHHHHHHHHHH
Confidence 1236899999999999999998754
No 328
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.00 E-value=1.9e-09 Score=76.62 Aligned_cols=102 Identities=17% Similarity=0.204 Sum_probs=63.5
Q ss_pred hhhhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC-HHHHHHhh-CCCcc
Q 029453 74 HQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAAS-EDELRYHM-GLTNF 151 (193)
Q Consensus 74 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~-~~~~~~~~-~~~~~ 151 (193)
...+...+..+++++|++++|+|++++.. .....+ ... ..++|+++|+||+|+.+... ..+..... ....
T Consensus 21 ~~~~~~~l~~~~~~ad~il~VvD~~~~~~--~~~~~l---~~~--~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~- 92 (190)
T cd01855 21 EDFILNLLSSISPKKALVVHVVDIFDFPG--SLIPRL---RLF--GGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAA- 92 (190)
T ss_pred HHHHHHHHHhcccCCcEEEEEEECccCCC--ccchhH---HHh--cCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHH-
Confidence 33457777888999999999999987531 111111 111 14689999999999974332 22221111 0000
Q ss_pred ccCCCcccCCCCCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 152 TTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
.. ......+++++||++|.|+++++++|.+.+
T Consensus 93 ~~---------~~~~~~~i~~vSA~~~~gi~eL~~~l~~~l 124 (190)
T cd01855 93 AG---------LGLKPKDVILISAKKGWGVEELINAIKKLA 124 (190)
T ss_pred hh---------cCCCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 00 000123689999999999999999998753
No 329
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.98 E-value=3.3e-09 Score=73.12 Aligned_cols=55 Identities=22% Similarity=0.346 Sum_probs=39.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeC-CeEEEEEEcCC
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIG-KIKFKAFDLGG 73 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~D~~g 73 (193)
+..+++++|.+|+|||||+|++.+.......++.+.+.....+. +..+.++||||
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~~~~~~~~~liDtPG 156 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQYITLMKRIYLIDCPG 156 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEEEEcCCCEEEEECcC
Confidence 56789999999999999999999877655544444333322222 23478999999
No 330
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.94 E-value=3.3e-09 Score=80.52 Aligned_cols=165 Identities=20% Similarity=0.218 Sum_probs=100.2
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCccccC-----------------CCCCcc---------eeEEEe-----------
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERLVQHQ-----------------PTQYPT---------SEELSI----------- 61 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~-----------------~t~~~~---------~~~~~~----------- 61 (193)
-+.|++++|...+|||||+..+..++...-. .|.... -..+++
T Consensus 166 ievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e 245 (591)
T KOG1143|consen 166 IEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVE 245 (591)
T ss_pred eEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHh
Confidence 3579999999999999999988765543210 011000 011111
Q ss_pred -CCeEEEEEEcCChhhhHHhHHhhhc--cCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC
Q 029453 62 -GKIKFKAFDLGGHQMARRVWKDYYA--KVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAAS 138 (193)
Q Consensus 62 -~~~~~~~~D~~g~~~~~~~~~~~~~--~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~ 138 (193)
...-+.++|..||.+|.......+. ..|.+.+|+.+.... .+.......+... -++|+.++++|+|+.....
T Consensus 246 ~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi--~~tTrEHLgl~~A---L~iPfFvlvtK~Dl~~~~~ 320 (591)
T KOG1143|consen 246 KSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGI--TWTTREHLGLIAA---LNIPFFVLVTKMDLVDRQG 320 (591)
T ss_pred hhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCC--ccccHHHHHHHHH---hCCCeEEEEEeeccccchh
Confidence 2356889999999988776555444 378999999998753 2323333333222 3899999999999984433
Q ss_pred HH----H---HHHhhCCCcccc----CCCcccC--CCCCCccEEEEEEeeecCCChhHHHHhh
Q 029453 139 ED----E---LRYHMGLTNFTT----GKGNVNL--DNTNVRPLEVFMCSIVRKMGYGEGFKWL 188 (193)
Q Consensus 139 ~~----~---~~~~~~~~~~~~----~~~~~~~--~~~~~~~~~~~~~Sa~~~~gi~~~~~~i 188 (193)
.+ + +....++...+. ..+.... +.......+++.+|+.+|+|++-+..+|
T Consensus 321 ~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~fL 383 (591)
T KOG1143|consen 321 LKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRTFL 383 (591)
T ss_pred HHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHHHH
Confidence 32 3 333333333211 0000000 1112245799999999999998776655
No 331
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.91 E-value=1e-08 Score=73.59 Aligned_cols=161 Identities=18% Similarity=0.258 Sum_probs=97.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCcccc----CCCCCcceeEEEeCCeEEEEEEcCChhhhHH---hHHhhhccCCEEE
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDERLVQH----QPTQYPTSEELSIGKIKFKAFDLGGHQMARR---VWKDYYAKVDAVV 92 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~---~~~~~~~~~d~ii 92 (193)
+++|.++|...|||||+....+....+.. +.|..++...+...-..+.+||.|||..+.. -....++.+.+++
T Consensus 27 kp~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALi 106 (347)
T KOG3887|consen 27 KPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALI 106 (347)
T ss_pred CceEEEEeecccCcchhhheeeeccCCCceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeEE
Confidence 46799999999999998888776554422 2244455555555557899999999875422 1245678899999
Q ss_pred EEEeCCChhhHHHHHHHHHHHH-hCC-CCCCCcEEEEeeCCCCCCCCC----HHHHHHhhCCCccccCCCcccCCCCCCc
Q 029453 93 YLIDAYDKERFSESKRELDALL-SDE-ALADVPFLILGNKIDIPYAAS----EDELRYHMGLTNFTTGKGNVNLDNTNVR 166 (193)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~-~~~-~~~~~pviiv~nK~Dl~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (193)
+|+|+.+. +.+....+...+ +.. ..+++.+=+.++|.|...+.- ...+...-+.... .....
T Consensus 107 fvIDaQdd--y~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~----------d~gle 174 (347)
T KOG3887|consen 107 FVIDAQDD--YMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELA----------DAGLE 174 (347)
T ss_pred EEEechHH--HHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHH----------hhhhc
Confidence 99999765 333333333322 222 226788889999999763211 1112222211111 11111
Q ss_pred c-EEEEEEeeecCCChhHHHHhhhhhc
Q 029453 167 P-LEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 167 ~-~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
. .-.+...+.-.+.+-|.|..+++.|
T Consensus 175 ~v~vsf~LTSIyDHSIfEAFSkvVQkL 201 (347)
T KOG3887|consen 175 KVQVSFYLTSIYDHSIFEAFSKVVQKL 201 (347)
T ss_pred cceEEEEEeeecchHHHHHHHHHHHHH
Confidence 1 1235555667778888888877654
No 332
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.91 E-value=4.2e-09 Score=73.51 Aligned_cols=57 Identities=26% Similarity=0.341 Sum_probs=40.7
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcce--eEEEeCCeEEEEEEcCCh
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTS--EELSIGKIKFKAFDLGGH 74 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~D~~g~ 74 (193)
....++++++|.||+|||||+|++.+.......+..+.+. ..+..+ ..+.++||||.
T Consensus 114 ~~~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~~~~-~~~~l~DtPGi 172 (172)
T cd04178 114 IKTSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVHLD-KKVKLLDSPGI 172 (172)
T ss_pred cccCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEEEeC-CCEEEEECcCC
Confidence 3456899999999999999999999877654444333322 222332 46889999993
No 333
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.90 E-value=4.5e-09 Score=73.45 Aligned_cols=97 Identities=21% Similarity=0.158 Sum_probs=61.5
Q ss_pred cCChh-hhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCC
Q 029453 71 LGGHQ-MARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLT 149 (193)
Q Consensus 71 ~~g~~-~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~ 149 (193)
.|||. +........+.++|++++|+|++++..... ..+...+ .++|+++|+||+|+.+.....++.+.+...
T Consensus 2 ~~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~--~~i~~~~-----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~ 74 (171)
T cd01856 2 FPGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRN--PLLEKIL-----GNKPRIIVLNKADLADPKKTKKWLKYFESK 74 (171)
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCC--hhhHhHh-----cCCCEEEEEehhhcCChHHHHHHHHHHHhc
Confidence 46654 333344556789999999999987632111 1122221 357999999999996432211222222111
Q ss_pred ccccCCCcccCCCCCCccEEEEEEeeecCCChhHHHHhhhhh
Q 029453 150 NFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQY 191 (193)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~ 191 (193)
...++.+||+++.|++++.+.|.+.
T Consensus 75 -----------------~~~vi~iSa~~~~gi~~L~~~l~~~ 99 (171)
T cd01856 75 -----------------GEKVLFVNAKSGKGVKKLLKAAKKL 99 (171)
T ss_pred -----------------CCeEEEEECCCcccHHHHHHHHHHH
Confidence 1357899999999999999988764
No 334
>PRK12289 GTPase RsgA; Reviewed
Probab=98.89 E-value=9.1e-09 Score=79.43 Aligned_cols=88 Identities=11% Similarity=0.089 Sum_probs=60.9
Q ss_pred hhhccCCEEEEEEeCCChh-hHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCC
Q 029453 83 DYYAKVDAVVYLIDAYDKE-RFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLD 161 (193)
Q Consensus 83 ~~~~~~d~ii~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (193)
..+.++|.+++|+|+.++. ....+..++.... . .++|+++|+||+||........+...+..
T Consensus 85 ~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~-~---~~ip~ILVlNK~DLv~~~~~~~~~~~~~~------------- 147 (352)
T PRK12289 85 PPVANADQILLVFALAEPPLDPWQLSRFLVKAE-S---TGLEIVLCLNKADLVSPTEQQQWQDRLQQ------------- 147 (352)
T ss_pred hhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHH-H---CCCCEEEEEEchhcCChHHHHHHHHHHHh-------------
Confidence 3477899999999998764 2334455555442 2 57999999999999643222233333311
Q ss_pred CCCCccEEEEEEeeecCCChhHHHHhhhhh
Q 029453 162 NTNVRPLEVFMCSIVRKMGYGEGFKWLSQY 191 (193)
Q Consensus 162 ~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~ 191 (193)
...+++++||+++.|+++++++|...
T Consensus 148 ----~g~~v~~iSA~tg~GI~eL~~~L~~k 173 (352)
T PRK12289 148 ----WGYQPLFISVETGIGLEALLEQLRNK 173 (352)
T ss_pred ----cCCeEEEEEcCCCCCHHHHhhhhccc
Confidence 12368999999999999999998653
No 335
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.86 E-value=9.9e-09 Score=69.43 Aligned_cols=52 Identities=21% Similarity=0.315 Sum_probs=38.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccccC--CCCCcceeEEEeCCeEEEEEEcCCh
Q 029453 22 KILFLGLDNSGKTTLLHMLKDERLVQHQ--PTQYPTSEELSIGKIKFKAFDLGGH 74 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~D~~g~ 74 (193)
+++++|.+|+|||||+|++.+....... +..+.....+..++ .+.+|||||.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFLTP-TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEeCC-CEEEEECCCc
Confidence 8999999999999999999988765332 22333344444443 5789999995
No 336
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.85 E-value=4e-08 Score=78.45 Aligned_cols=139 Identities=17% Similarity=0.129 Sum_probs=87.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCC
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAY 98 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~ 98 (193)
..+-++++||||+|||||++.+.......+-....-....+....+.+++.++|.+ ...+ ...-+-+|.+++++|.+
T Consensus 68 PPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GPiTvvsgK~RRiTflEcp~D--l~~m-iDvaKIaDLVlLlIdgn 144 (1077)
T COG5192 68 PPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPITVVSGKTRRITFLECPSD--LHQM-IDVAKIADLVLLLIDGN 144 (1077)
T ss_pred CCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCceEEeecceeEEEEEeChHH--HHHH-HhHHHhhheeEEEeccc
Confidence 45678899999999999999987544322211111122234556688999999943 2222 23345699999999997
Q ss_pred ChhhHHHHHHHHHHHHhCCCCCCCc-EEEEeeCCCCC-CCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEee
Q 029453 99 DKERFSESKRELDALLSDEALADVP-FLILGNKIDIP-YAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSI 175 (193)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~p-viiv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 175 (193)
-+ |.--...+..++.. .+.| |+-|+|+.|+. +..+.......+.-.+|+..- .....|..|.
T Consensus 145 fG--fEMETmEFLnil~~---HGmPrvlgV~ThlDlfk~~stLr~~KKrlkhRfWtEiy----------qGaKlFylsg 208 (1077)
T COG5192 145 FG--FEMETMEFLNILIS---HGMPRVLGVVTHLDLFKNPSTLRSIKKRLKHRFWTEIY----------QGAKLFYLSG 208 (1077)
T ss_pred cC--ceehHHHHHHHHhh---cCCCceEEEEeecccccChHHHHHHHHHHhhhHHHHHc----------CCceEEEecc
Confidence 65 33333444455444 3444 77788999998 445556677767666664422 2346666664
No 337
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=98.84 E-value=2.6e-08 Score=74.85 Aligned_cols=117 Identities=17% Similarity=0.154 Sum_probs=78.6
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHHhcC----------Ccc-----ccCCCCCc--ceeEEEeC--CeEEEEEEcCChhh
Q 029453 16 LWQKEAKILFLGLDNSGKTTLLHMLKDE----------RLV-----QHQPTQYP--TSEELSIG--KIKFKAFDLGGHQM 76 (193)
Q Consensus 16 ~~~~~~~i~i~G~~~~GKssl~~~l~~~----------~~~-----~~~~t~~~--~~~~~~~~--~~~~~~~D~~g~~~ 76 (193)
..+.+.+|+-+|...-|||||-..+..- ++. +.+..++. +...+.|. ++.+.=.|+|||..
T Consensus 50 R~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHAD 129 (449)
T KOG0460|consen 50 RDKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHAD 129 (449)
T ss_pred cCCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHH
Confidence 3567889999999999999998887411 111 01112232 33445554 46777789999998
Q ss_pred hHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC
Q 029453 77 ARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYA 136 (193)
Q Consensus 77 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~ 136 (193)
|-..+-..-.+-|+.|+|+.++|.. ....+....+.++.+. ..+++.+||.|+.++
T Consensus 130 YIKNMItGaaqMDGaILVVaatDG~--MPQTrEHlLLArQVGV--~~ivvfiNKvD~V~d 185 (449)
T KOG0460|consen 130 YIKNMITGAAQMDGAILVVAATDGP--MPQTREHLLLARQVGV--KHIVVFINKVDLVDD 185 (449)
T ss_pred HHHHhhcCccccCceEEEEEcCCCC--CcchHHHHHHHHHcCC--ceEEEEEecccccCC
Confidence 8776666666789999999999873 3333444444444332 457888899999843
No 338
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.84 E-value=9.4e-09 Score=77.26 Aligned_cols=97 Identities=22% Similarity=0.202 Sum_probs=63.8
Q ss_pred cCChhh-hHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCC
Q 029453 71 LGGHQM-ARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLT 149 (193)
Q Consensus 71 ~~g~~~-~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~ 149 (193)
.|||.. ........++.+|++++|+|+.++.+- ....+...+ .++|+++|+||+|+.+.....++...+...
T Consensus 4 fpgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~--~~~~i~~~l-----~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~ 76 (276)
T TIGR03596 4 FPGHMAKARREIKEKLKLVDVVIEVLDARIPLSS--RNPMIDEIR-----GNKPRLIVLNKADLADPAVTKQWLKYFEEK 76 (276)
T ss_pred ChHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCC--CChhHHHHH-----CCCCEEEEEEccccCCHHHHHHHHHHHHHc
Confidence 578753 344456678899999999999876321 122233333 267999999999996432222333223111
Q ss_pred ccccCCCcccCCCCCCccEEEEEEeeecCCChhHHHHhhhhh
Q 029453 150 NFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQY 191 (193)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~ 191 (193)
..+++.+||+++.|++++.+.|.+.
T Consensus 77 -----------------~~~vi~iSa~~~~gi~~L~~~i~~~ 101 (276)
T TIGR03596 77 -----------------GIKALAINAKKGKGVKKIIKAAKKL 101 (276)
T ss_pred -----------------CCeEEEEECCCcccHHHHHHHHHHH
Confidence 1367999999999999999888654
No 339
>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]
Probab=98.81 E-value=2.6e-08 Score=72.32 Aligned_cols=81 Identities=21% Similarity=0.511 Sum_probs=65.9
Q ss_pred cceeEEEeCCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCC----------hhhHHHHHHHHHHHHhCCCCCCCc
Q 029453 54 PTSEELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYD----------KERFSESKRELDALLSDEALADVP 123 (193)
Q Consensus 54 ~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~p 123 (193)
.....+..+...++.+|.+||...+.-|-.++..+.++|+|+..+. ...+++....+..+-+...+..+.
T Consensus 192 Ifet~FqVdkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tis 271 (379)
T KOG0099|consen 192 IFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTIS 271 (379)
T ss_pred eeeEEEeccccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhh
Confidence 3344556667889999999999999999999999999999999873 244667777777776666677899
Q ss_pred EEEEeeCCCCC
Q 029453 124 FLILGNKIDIP 134 (193)
Q Consensus 124 viiv~nK~Dl~ 134 (193)
+|+.+||.|+.
T Consensus 272 vIlFLNKqDll 282 (379)
T KOG0099|consen 272 VILFLNKQDLL 282 (379)
T ss_pred eeEEecHHHHH
Confidence 99999999984
No 340
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.80 E-value=2.2e-09 Score=79.43 Aligned_cols=162 Identities=17% Similarity=0.137 Sum_probs=95.2
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccccC--------------------------C------CCC---cceeEEEe
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQ--------------------------P------TQY---PTSEELSI 61 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~--------------------------~------t~~---~~~~~~~~ 61 (193)
-+.-++|+-+|...-||||++..+++-...... | ..+ +..-.+..
T Consensus 35 RQATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~ 114 (466)
T KOG0466|consen 35 RQATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDR 114 (466)
T ss_pred heeeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCccc
Confidence 346789999999999999999998643321100 0 000 00000111
Q ss_pred C--------CeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCC
Q 029453 62 G--------KIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDI 133 (193)
Q Consensus 62 ~--------~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl 133 (193)
. -+.+.++|+|||+-.-..+...---.|++++++..++...-..-...+..+ ... .-+.++++-||+|+
T Consensus 115 ~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaav-eiM--~LkhiiilQNKiDl 191 (466)
T KOG0466|consen 115 PGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAV-EIM--KLKHIIILQNKIDL 191 (466)
T ss_pred CCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHH-HHh--hhceEEEEechhhh
Confidence 1 146789999999865433322212258888888887643211111112211 111 23678999999999
Q ss_pred CCCCCH-HHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 134 PYAASE-DELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 134 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
.++.+. ++.++...... ....+..+++++||.-++|++-+.++|.+++
T Consensus 192 i~e~~A~eq~e~I~kFi~-----------~t~ae~aPiiPisAQlkyNId~v~eyivkkI 240 (466)
T KOG0466|consen 192 IKESQALEQHEQIQKFIQ-----------GTVAEGAPIIPISAQLKYNIDVVCEYIVKKI 240 (466)
T ss_pred hhHHHHHHHHHHHHHHHh-----------ccccCCCceeeehhhhccChHHHHHHHHhcC
Confidence 743322 22333332222 1222456899999999999999999998764
No 341
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.80 E-value=2.2e-08 Score=75.57 Aligned_cols=87 Identities=20% Similarity=0.061 Sum_probs=61.8
Q ss_pred hhhccCCEEEEEEeCCChh-hHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCC
Q 029453 83 DYYAKVDAVVYLIDAYDKE-RFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLD 161 (193)
Q Consensus 83 ~~~~~~d~ii~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (193)
..+.++|.+++|+|+.++. ++..+..++..+.. .++|+++|+||+|+.+............ .
T Consensus 74 ~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~----~~ip~iIVlNK~DL~~~~~~~~~~~~~~--~----------- 136 (287)
T cd01854 74 VIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA----AGIEPVIVLTKADLLDDEEEELELVEAL--A----------- 136 (287)
T ss_pred eEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH----cCCCEEEEEEHHHCCChHHHHHHHHHHH--h-----------
Confidence 3477899999999999886 66677776665532 4789999999999964311111111110 0
Q ss_pred CCCCccEEEEEEeeecCCChhHHHHhhhh
Q 029453 162 NTNVRPLEVFMCSIVRKMGYGEGFKWLSQ 190 (193)
Q Consensus 162 ~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~ 190 (193)
...+++++||+++.|+++++++|..
T Consensus 137 ----~g~~v~~vSA~~g~gi~~L~~~L~~ 161 (287)
T cd01854 137 ----LGYPVLAVSAKTGEGLDELREYLKG 161 (287)
T ss_pred ----CCCeEEEEECCCCccHHHHHhhhcc
Confidence 1247899999999999999998764
No 342
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=98.79 E-value=5.4e-07 Score=72.03 Aligned_cols=83 Identities=22% Similarity=0.212 Sum_probs=55.2
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeC------CeEEEEEEcCChhhhHHhHHhhhcc----
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIG------KIKFKAFDLGGHQMARRVWKDYYAK---- 87 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~------~~~~~~~D~~g~~~~~~~~~~~~~~---- 87 (193)
-.+..|.|+|..++|||||+.+|.+.+. ..++.+-.+...+.. ...+.+|-+.|...+..+..-.+..
T Consensus 23 ~~~k~vlvlG~~~~GKttli~~L~~~e~--~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~ 100 (472)
T PF05783_consen 23 PSEKSVLVLGDKGSGKTTLIARLQGIED--PKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLP 100 (472)
T ss_pred CCCceEEEEeCCCCchHHHHHHhhccCC--CCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCccccc
Confidence 3567999999999999999999876542 223333333333221 2468899998866666655544432
Q ss_pred CCEEEEEEeCCChhh
Q 029453 88 VDAVVYLIDAYDKER 102 (193)
Q Consensus 88 ~d~ii~v~d~~~~~~ 102 (193)
--++|+|+|.+.|..
T Consensus 101 ~t~vvIvlDlS~PW~ 115 (472)
T PF05783_consen 101 NTLVVIVLDLSKPWN 115 (472)
T ss_pred ceEEEEEecCCChHH
Confidence 257888999987644
No 343
>PRK00098 GTPase RsgA; Reviewed
Probab=98.78 E-value=1.8e-08 Score=76.47 Aligned_cols=85 Identities=22% Similarity=0.129 Sum_probs=57.9
Q ss_pred hccCCEEEEEEeCCChhhHHHH-HHHHHHHHhCCCCCCCcEEEEeeCCCCCCCC-CHHHHHHhhCCCccccCCCcccCCC
Q 029453 85 YAKVDAVVYLIDAYDKERFSES-KRELDALLSDEALADVPFLILGNKIDIPYAA-SEDELRYHMGLTNFTTGKGNVNLDN 162 (193)
Q Consensus 85 ~~~~d~ii~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (193)
..++|.+++|+|+.++...... ..++..+ .. .++|+++|+||+|+.... ...++...+..
T Consensus 78 aaniD~vllV~d~~~p~~~~~~idr~L~~~-~~---~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~-------------- 139 (298)
T PRK00098 78 AANVDQAVLVFAAKEPDFSTDLLDRFLVLA-EA---NGIKPIIVLNKIDLLDDLEEARELLALYRA-------------- 139 (298)
T ss_pred eecCCEEEEEEECCCCCCCHHHHHHHHHHH-HH---CCCCEEEEEEhHHcCCCHHHHHHHHHHHHH--------------
Confidence 4789999999999887554443 4454444 22 478999999999996221 11112222211
Q ss_pred CCCccEEEEEEeeecCCChhHHHHhhhh
Q 029453 163 TNVRPLEVFMCSIVRKMGYGEGFKWLSQ 190 (193)
Q Consensus 163 ~~~~~~~~~~~Sa~~~~gi~~~~~~i~~ 190 (193)
...+++++||+++.|+++++++|..
T Consensus 140 ---~g~~v~~vSA~~g~gi~~L~~~l~g 164 (298)
T PRK00098 140 ---IGYDVLELSAKEGEGLDELKPLLAG 164 (298)
T ss_pred ---CCCeEEEEeCCCCccHHHHHhhccC
Confidence 1147899999999999999998864
No 344
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.77 E-value=4.5e-08 Score=74.70 Aligned_cols=79 Identities=24% Similarity=0.345 Sum_probs=57.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCcc-ccCC--CCCcceeEEEeC------------------CeEEEEEEcCChhh--
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDERLV-QHQP--TQYPTSEELSIG------------------KIKFKAFDLGGHQM-- 76 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~~~~-~~~~--t~~~~~~~~~~~------------------~~~~~~~D~~g~~~-- 76 (193)
.++++|+|.||+|||||+|.+...... ..+| |..|+....... ...+.++|.+|.-.
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 578999999999999999999877743 4555 666665544331 24688999988332
Q ss_pred -----hHHhHHhhhccCCEEEEEEeCC
Q 029453 77 -----ARRVWKDYYAKVDAVVYLIDAY 98 (193)
Q Consensus 77 -----~~~~~~~~~~~~d~ii~v~d~~ 98 (193)
....+...++.+|+++.|+|+.
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEec
Confidence 2233445578899999999996
No 345
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.77 E-value=2e-08 Score=69.02 Aligned_cols=81 Identities=15% Similarity=0.170 Sum_probs=52.9
Q ss_pred CEEEEEEeCCChhhHHHHHHHHH-HHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCcc
Q 029453 89 DAVVYLIDAYDKERFSESKRELD-ALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRP 167 (193)
Q Consensus 89 d~ii~v~d~~~~~~~~~~~~~~~-~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (193)
|++++|+|+.++.+.. ..++. ..+.. .++|+++|+||+|+.+.....++...+... ..
T Consensus 1 Dvvl~VvD~~~p~~~~--~~~i~~~~~~~---~~~p~IiVlNK~Dl~~~~~~~~~~~~~~~~----------------~~ 59 (155)
T cd01849 1 DVILEVLDARDPLGTR--SPDIERVLIKE---KGKKLILVLNKADLVPKEVLRKWLAYLRHS----------------YP 59 (155)
T ss_pred CEEEEEEeccCCcccc--CHHHHHHHHhc---CCCCEEEEEechhcCCHHHHHHHHHHHHhh----------------CC
Confidence 7899999998874322 22332 23222 478999999999996432222222222111 12
Q ss_pred EEEEEEeeecCCChhHHHHhhhh
Q 029453 168 LEVFMCSIVRKMGYGEGFKWLSQ 190 (193)
Q Consensus 168 ~~~~~~Sa~~~~gi~~~~~~i~~ 190 (193)
..++.+||+++.|++++.+.|.+
T Consensus 60 ~~ii~vSa~~~~gi~~L~~~i~~ 82 (155)
T cd01849 60 TIPFKISATNGQGIEKKESAFTK 82 (155)
T ss_pred ceEEEEeccCCcChhhHHHHHHH
Confidence 46899999999999999998864
No 346
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.72 E-value=1.2e-07 Score=65.25 Aligned_cols=61 Identities=25% Similarity=0.284 Sum_probs=42.6
Q ss_pred HhCCCCcccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccee--EEEeCCeEEEEEEcCCh
Q 029453 13 SLGLWQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSE--ELSIGKIKFKAFDLGGH 74 (193)
Q Consensus 13 ~~~~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~D~~g~ 74 (193)
..+......+++++|.+|+||||++|++.+.......++.+.+.. .+.. +..+.+|||||.
T Consensus 94 ~~~~~~~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~~~~~-~~~~~~~DtpGi 156 (156)
T cd01859 94 LAKIDGKEGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQLVKI-TSKIYLLDTPGV 156 (156)
T ss_pred HHhhcCCCcEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeeeEEEEc-CCCEEEEECcCC
Confidence 334455678999999999999999999997765554444443322 2222 236889999993
No 347
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=98.72 E-value=3.1e-08 Score=78.55 Aligned_cols=157 Identities=19% Similarity=0.226 Sum_probs=108.3
Q ss_pred CCCCcccEEEEEcCCCCCHHHHHHHHhcCCccccCC-CCCcc--eeEEEeCCeEEEEEEcCChhhhHHhHHhhhccCCEE
Q 029453 15 GLWQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQP-TQYPT--SEELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAV 91 (193)
Q Consensus 15 ~~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~-t~~~~--~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~i 91 (193)
+..-.++|++|+|..++|||+|++++..+.+...+. ..+.. ..........+.+.|.+|+... .+-..+|++
T Consensus 25 srsipelk~givg~~~sgktalvhr~ltgty~~~e~~e~~~~kkE~vv~gqs~lLlirdeg~~~~a-----Qft~wvdav 99 (749)
T KOG0705|consen 25 SRSIPELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGGRFKKEVVVDGQSHLLLIRDEGGHPDA-----QFCQWVDAV 99 (749)
T ss_pred ecccchhheeeeecccCCceeeeeeeccceeccccCCcCccceeeEEeeccceEeeeecccCCchh-----hhhhhccce
Confidence 345578999999999999999999999998885443 32222 2233344567777788885432 234558999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC---CCCCHHHHHHhhCCCccccCCCcccCCCCCCccE
Q 029453 92 VYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIP---YAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPL 168 (193)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (193)
|+|+..-+..+++........+........+|++.++++--.. +....+.-...+.... ..+
T Consensus 100 Ifvf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~---------------krc 164 (749)
T KOG0705|consen 100 VFVFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQM---------------KRC 164 (749)
T ss_pred EEEEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhc---------------Ccc
Confidence 9999999888888888777777666556778888888764332 1112111111222222 346
Q ss_pred EEEEEeeecCCChhHHHHhhhhh
Q 029453 169 EVFMCSIVRKMGYGEGFKWLSQY 191 (193)
Q Consensus 169 ~~~~~Sa~~~~gi~~~~~~i~~~ 191 (193)
.+++.++.+|.++..+|..++..
T Consensus 165 sy~et~atyGlnv~rvf~~~~~k 187 (749)
T KOG0705|consen 165 SYYETCATYGLNVERVFQEVAQK 187 (749)
T ss_pred ceeecchhhhhhHHHHHHHHHHH
Confidence 78999999999999999988764
No 348
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.71 E-value=4.4e-08 Score=71.09 Aligned_cols=80 Identities=19% Similarity=0.201 Sum_probs=51.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcc--ccCC-CCCcceeEEEeCCeEEEEEEcCChhhhH-------HhHHhhhccCCE
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLV--QHQP-TQYPTSEELSIGKIKFKAFDLGGHQMAR-------RVWKDYYAKVDA 90 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~--~~~~-t~~~~~~~~~~~~~~~~~~D~~g~~~~~-------~~~~~~~~~~d~ 90 (193)
.+++++|.|.+||||++..+.+.... ++.- |.......+++.+-.+.+.|.||.-+.. ....+.-+.|+.
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~qviavartcnl 139 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQVIAVARTCNL 139 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccccceeeecCcchhcccccCCCCccEEEEEeecccE
Confidence 48999999999999999998875533 1211 2222334455777789999999843221 011112245788
Q ss_pred EEEEEeCCCh
Q 029453 91 VVYLIDAYDK 100 (193)
Q Consensus 91 ii~v~d~~~~ 100 (193)
+++|.|+..|
T Consensus 140 i~~vld~~kp 149 (358)
T KOG1487|consen 140 IFIVLDVLKP 149 (358)
T ss_pred EEEEeeccCc
Confidence 8888888644
No 349
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.71 E-value=8.7e-08 Score=72.45 Aligned_cols=57 Identities=19% Similarity=0.370 Sum_probs=41.0
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcce--eEEEeCCeEEEEEEcCCh
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTS--EELSIGKIKFKAFDLGGH 74 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~D~~g~ 74 (193)
....++++++|.||+||||++|.+.+.......+..+.+. ..+..+ ..+.++||||.
T Consensus 118 ~~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~~-~~~~l~DtPGi 176 (287)
T PRK09563 118 RPRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWIKLG-KGLELLDTPGI 176 (287)
T ss_pred CcCceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEEEEeC-CcEEEEECCCc
Confidence 3467899999999999999999999877654444333222 233333 35889999995
No 350
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.70 E-value=8.7e-08 Score=72.01 Aligned_cols=85 Identities=24% Similarity=0.360 Sum_probs=61.6
Q ss_pred hCCCCcccEEEEEcCCCCCHHHHHHHHhcCCcc-ccCC--CCCcceeEEEeC-----------------CeEEEEEEcCC
Q 029453 14 LGLWQKEAKILFLGLDNSGKTTLLHMLKDERLV-QHQP--TQYPTSEELSIG-----------------KIKFKAFDLGG 73 (193)
Q Consensus 14 ~~~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~-~~~~--t~~~~~~~~~~~-----------------~~~~~~~D~~g 73 (193)
+++..++++++|+|.|++|||||+|.+...... ...| |.+++...+... ...+.++|..|
T Consensus 14 ~gR~~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAG 93 (391)
T KOG1491|consen 14 LGRDGNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAG 93 (391)
T ss_pred ccCCCCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecc
Confidence 455668889999999999999999999887765 3444 666666554432 24688999988
Q ss_pred hhhh-------HHhHHhhhccCCEEEEEEeCC
Q 029453 74 HQMA-------RRVWKDYYAKVDAVVYLIDAY 98 (193)
Q Consensus 74 ~~~~-------~~~~~~~~~~~d~ii~v~d~~ 98 (193)
..+. ...+...++.+|+++.|+++.
T Consensus 94 LvkGAs~G~GLGN~FLs~iR~vDaifhVVr~f 125 (391)
T KOG1491|consen 94 LVKGASAGEGLGNKFLSHIRHVDAIFHVVRAF 125 (391)
T ss_pred cccCcccCcCchHHHHHhhhhccceeEEEEec
Confidence 4322 223344567899999999985
No 351
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=98.70 E-value=1.4e-06 Score=69.62 Aligned_cols=85 Identities=16% Similarity=0.189 Sum_probs=57.8
Q ss_pred eEEEEEEcCCh-------------hhhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeC
Q 029453 64 IKFKAFDLGGH-------------QMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNK 130 (193)
Q Consensus 64 ~~~~~~D~~g~-------------~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK 130 (193)
....++|+||. +...++..+++++.+++|+|+--..- ..-..-...++.+....+...|+|+||
T Consensus 412 qRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSV---DAERSnVTDLVsq~DP~GrRTIfVLTK 488 (980)
T KOG0447|consen 412 QRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSV---DAERSIVTDLVSQMDPHGRRTIFVLTK 488 (980)
T ss_pred ceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCc---chhhhhHHHHHHhcCCCCCeeEEEEee
Confidence 35778999992 23456777899999999999854321 222223334444555567889999999
Q ss_pred CCCC--CCCCHHHHHHhhCCCcc
Q 029453 131 IDIP--YAASEDELRYHMGLTNF 151 (193)
Q Consensus 131 ~Dl~--~~~~~~~~~~~~~~~~~ 151 (193)
+|+. +-..++.+.+.+.-..|
T Consensus 489 VDlAEknlA~PdRI~kIleGKLF 511 (980)
T KOG0447|consen 489 VDLAEKNVASPSRIQQIIEGKLF 511 (980)
T ss_pred cchhhhccCCHHHHHHHHhcCcc
Confidence 9998 34677777777776553
No 352
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.70 E-value=4.4e-07 Score=69.06 Aligned_cols=117 Identities=21% Similarity=0.259 Sum_probs=70.8
Q ss_pred hCCCCcccEEEEEcCCCCCHHHHHHHHhcCCccccC-----------CCCCcceeE--EEeCC--eEEEEEEcCChhhh-
Q 029453 14 LGLWQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQ-----------PTQYPTSEE--LSIGK--IKFKAFDLGGHQMA- 77 (193)
Q Consensus 14 ~~~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~-----------~t~~~~~~~--~~~~~--~~~~~~D~~g~~~~- 77 (193)
.....-.++|.++|++|+|||||+|.+++....... ++....... +.-++ ..+.++||||...+
T Consensus 17 ~~k~Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~i 96 (373)
T COG5019 17 LSKKGIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFI 96 (373)
T ss_pred HHhcCCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccc
Confidence 334467899999999999999999999877433221 111111111 12222 57889999993321
Q ss_pred -------------HHhHHhhh--------------ccCCEEEEEEeCCChhhHHHHH-HHHHHHHhCCCCCCCcEEEEee
Q 029453 78 -------------RRVWKDYY--------------AKVDAVVYLIDAYDKERFSESK-RELDALLSDEALADVPFLILGN 129 (193)
Q Consensus 78 -------------~~~~~~~~--------------~~~d~ii~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~pviiv~n 129 (193)
......++ .++|+.+|.+..+.- .+..++ ..+..+. ..+-+|-|+.
T Consensus 97 dNs~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh-~l~~~DIe~Mk~ls-----~~vNlIPVI~ 170 (373)
T COG5019 97 DNSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGH-GLKPLDIEAMKRLS-----KRVNLIPVIA 170 (373)
T ss_pred cccccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCC-CCCHHHHHHHHHHh-----cccCeeeeee
Confidence 11111222 147899999987532 234433 3444443 2456888999
Q ss_pred CCCCCCC
Q 029453 130 KIDIPYA 136 (193)
Q Consensus 130 K~Dl~~~ 136 (193)
|+|....
T Consensus 171 KaD~lT~ 177 (373)
T COG5019 171 KADTLTD 177 (373)
T ss_pred ccccCCH
Confidence 9998643
No 353
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.70 E-value=1.5e-07 Score=72.71 Aligned_cols=78 Identities=18% Similarity=0.192 Sum_probs=58.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCc-c-ccCC--CCCcceeEEEeCC-----------------eEEEEEEcCChhh---
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERL-V-QHQP--TQYPTSEELSIGK-----------------IKFKAFDLGGHQM--- 76 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~-~-~~~~--t~~~~~~~~~~~~-----------------~~~~~~D~~g~~~--- 76 (193)
.+++++|.|++|||||++.+.+... . ..+| |..++...+.+.+ ..+.+.|.||...
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 6899999999999999999998876 3 2333 5667776666543 3678999999543
Q ss_pred ----hHHhHHhhhccCCEEEEEEeCC
Q 029453 77 ----ARRVWKDYYAKVDAVVYLIDAY 98 (193)
Q Consensus 77 ----~~~~~~~~~~~~d~ii~v~d~~ 98 (193)
....+...++.+|++++|++..
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCC
Confidence 2224445678999999999984
No 354
>PRK12288 GTPase RsgA; Reviewed
Probab=98.69 E-value=1.3e-07 Score=73.04 Aligned_cols=88 Identities=20% Similarity=0.127 Sum_probs=61.2
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCC
Q 029453 86 AKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNV 165 (193)
Q Consensus 86 ~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (193)
-++|.+++|++.....++..+..|+.... . .++|+++|+||+|+.+............... .
T Consensus 119 ANvD~vlIV~s~~p~~s~~~Ldr~L~~a~-~---~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~--~------------ 180 (347)
T PRK12288 119 ANIDQIVIVSAVLPELSLNIIDRYLVACE-T---LGIEPLIVLNKIDLLDDEGRAFVNEQLDIYR--N------------ 180 (347)
T ss_pred EEccEEEEEEeCCCCCCHHHHHHHHHHHH-h---cCCCEEEEEECccCCCcHHHHHHHHHHHHHH--h------------
Confidence 46899999999887777777777766442 2 5789999999999975432222111111100 0
Q ss_pred ccEEEEEEeeecCCChhHHHHhhhhh
Q 029453 166 RPLEVFMCSIVRKMGYGEGFKWLSQY 191 (193)
Q Consensus 166 ~~~~~~~~Sa~~~~gi~~~~~~i~~~ 191 (193)
...+++++||+++.|+++++++|...
T Consensus 181 ~g~~v~~vSA~tg~GideL~~~L~~k 206 (347)
T PRK12288 181 IGYRVLMVSSHTGEGLEELEAALTGR 206 (347)
T ss_pred CCCeEEEEeCCCCcCHHHHHHHHhhC
Confidence 12478999999999999999998653
No 355
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.69 E-value=4.8e-08 Score=66.08 Aligned_cols=79 Identities=16% Similarity=0.181 Sum_probs=47.9
Q ss_pred HhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCC
Q 029453 82 KDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLD 161 (193)
Q Consensus 82 ~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (193)
...++.+|++++|+|+.++.+.. ...+..++.... .++|+++|+||+|+.+.....++...+....
T Consensus 6 ~~~i~~aD~vl~ViD~~~p~~~~--~~~l~~~l~~~~-~~k~~iivlNK~DL~~~~~~~~~~~~~~~~~----------- 71 (141)
T cd01857 6 WRVVERSDIVVQIVDARNPLLFR--PPDLERYVKEVD-PRKKNILLLNKADLLTEEQRKAWAEYFKKEG----------- 71 (141)
T ss_pred HHHHhhCCEEEEEEEccCCcccC--CHHHHHHHHhcc-CCCcEEEEEechhcCCHHHHHHHHHHHHhcC-----------
Confidence 34578899999999998874322 223333333221 4789999999999964332223333322111
Q ss_pred CCCCccEEEEEEeeecCCC
Q 029453 162 NTNVRPLEVFMCSIVRKMG 180 (193)
Q Consensus 162 ~~~~~~~~~~~~Sa~~~~g 180 (193)
.+++++||+++.+
T Consensus 72 ------~~ii~iSa~~~~~ 84 (141)
T cd01857 72 ------IVVVFFSALKENA 84 (141)
T ss_pred ------CeEEEEEecCCCc
Confidence 3577888877653
No 356
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.69 E-value=4e-08 Score=74.25 Aligned_cols=98 Identities=19% Similarity=0.190 Sum_probs=64.0
Q ss_pred EcCChhh-hHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCC
Q 029453 70 DLGGHQM-ARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGL 148 (193)
Q Consensus 70 D~~g~~~-~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~ 148 (193)
-.|||.. -.......++.+|++++|+|+.++.+. ....+...+ .++|+++|+||+|+.+....+++.+.+..
T Consensus 6 wfpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~--~~~~l~~~~-----~~kp~iiVlNK~DL~~~~~~~~~~~~~~~ 78 (287)
T PRK09563 6 WFPGHMAKARREIKENLKLVDVVIEVLDARIPLSS--ENPMIDKII-----GNKPRLLILNKSDLADPEVTKKWIEYFEE 78 (287)
T ss_pred CcHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCC--CChhHHHHh-----CCCCEEEEEEchhcCCHHHHHHHHHHHHH
Confidence 3688753 334455668899999999999776321 122333332 26899999999999643222233332211
Q ss_pred CccccCCCcccCCCCCCccEEEEEEeeecCCChhHHHHhhhhh
Q 029453 149 TNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQY 191 (193)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~ 191 (193)
. ..+++.+||+++.|++++.+.|.+.
T Consensus 79 ~-----------------~~~vi~vSa~~~~gi~~L~~~l~~~ 104 (287)
T PRK09563 79 Q-----------------GIKALAINAKKGQGVKKILKAAKKL 104 (287)
T ss_pred c-----------------CCeEEEEECCCcccHHHHHHHHHHH
Confidence 1 1367899999999999999988654
No 357
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.67 E-value=7e-08 Score=68.60 Aligned_cols=55 Identities=24% Similarity=0.322 Sum_probs=35.9
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCcc----------ccCCCCCcceeEEEeCCeEEEEEEcCCh
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERLV----------QHQPTQYPTSEELSIGKIKFKAFDLGGH 74 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~~----------~~~~t~~~~~~~~~~~~~~~~~~D~~g~ 74 (193)
+..+++++|.+|+|||||+|.+.+.... ...+........+..+. .+.++||||.
T Consensus 126 ~~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~-~~~~~DtPG~ 190 (190)
T cd01855 126 KGGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN-GKKLYDTPGI 190 (190)
T ss_pred cCCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC-CCEEEeCcCC
Confidence 4578999999999999999999875431 11111111222233332 5789999993
No 358
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.67 E-value=6.4e-08 Score=72.77 Aligned_cols=56 Identities=16% Similarity=0.306 Sum_probs=40.0
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCC--cceeEEEeCCeEEEEEEcCCh
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQY--PTSEELSIGKIKFKAFDLGGH 74 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~--~~~~~~~~~~~~~~~~D~~g~ 74 (193)
.+.++++++|.||+|||||+|++.+..........+ .....+..+ ..+.++||||.
T Consensus 116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~-~~~~l~DtPG~ 173 (276)
T TIGR03596 116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIKLS-DGLELLDTPGI 173 (276)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEEEEeC-CCEEEEECCCc
Confidence 467899999999999999999999876543333222 222334443 35789999996
No 359
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.66 E-value=6.3e-08 Score=74.19 Aligned_cols=59 Identities=20% Similarity=0.242 Sum_probs=43.1
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeC-CeEEEEEEcCCh
Q 029453 16 LWQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIG-KIKFKAFDLGGH 74 (193)
Q Consensus 16 ~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~D~~g~ 74 (193)
......+++++|.||+||||+||+|.+.....+.+..+.+.....+. +..+.++||||.
T Consensus 128 ~~~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~~~~i~LlDtPGi 187 (322)
T COG1161 128 LLKRKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKLDDGIYLLDTPGI 187 (322)
T ss_pred CCccceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEEEEcCCCeEEecCCCc
Confidence 34567899999999999999999999988765555444444333321 234789999993
No 360
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.65 E-value=4e-07 Score=69.63 Aligned_cols=114 Identities=17% Similarity=0.201 Sum_probs=69.2
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCcccc--------CC--CCCcceeE--EEeCC--eEEEEEEcCChhhh-----
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQH--------QP--TQYPTSEE--LSIGK--IKFKAFDLGGHQMA----- 77 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~--------~~--t~~~~~~~--~~~~~--~~~~~~D~~g~~~~----- 77 (193)
..-.+.+.++|++|.|||||+|.|+....... .+ |....... +.-++ ..++++||||....
T Consensus 18 kG~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~ 97 (366)
T KOG2655|consen 18 KGFDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSN 97 (366)
T ss_pred cCCceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccc
Confidence 34569999999999999999999987754322 11 11222222 22223 57889999993321
Q ss_pred ---------HHhHHhhh-----------c--cCCEEEEEEeCCChhhHHHHH-HHHHHHHhCCCCCCCcEEEEeeCCCCC
Q 029453 78 ---------RRVWKDYY-----------A--KVDAVVYLIDAYDKERFSESK-RELDALLSDEALADVPFLILGNKIDIP 134 (193)
Q Consensus 78 ---------~~~~~~~~-----------~--~~d~ii~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~pviiv~nK~Dl~ 134 (193)
.+....|+ . ++|+.+|.+..+.- .+..++ ..+..+. ..+.+|-|+-|.|..
T Consensus 98 ~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~gh-gL~p~Di~~Mk~l~-----~~vNiIPVI~KaD~l 171 (366)
T KOG2655|consen 98 CWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGH-GLKPLDIEFMKKLS-----KKVNLIPVIAKADTL 171 (366)
T ss_pred cchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCC-CCcHhhHHHHHHHh-----ccccccceeeccccC
Confidence 11122222 2 57999999997632 133333 3344442 356788899999976
Q ss_pred CC
Q 029453 135 YA 136 (193)
Q Consensus 135 ~~ 136 (193)
..
T Consensus 172 T~ 173 (366)
T KOG2655|consen 172 TK 173 (366)
T ss_pred CH
Confidence 43
No 361
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.64 E-value=5.8e-08 Score=75.58 Aligned_cols=100 Identities=19% Similarity=0.317 Sum_probs=64.4
Q ss_pred hhhhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC-CCHHHHHHhhCCCccc
Q 029453 74 HQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYA-ASEDELRYHMGLTNFT 152 (193)
Q Consensus 74 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~-~~~~~~~~~~~~~~~~ 152 (193)
.+.+......+.+.++++++|+|+.+.. ......+...+ .+.|+++|+||+|+.+. ...+++...+.... +
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~--~s~~~~l~~~~-----~~~piilV~NK~DLl~k~~~~~~~~~~l~~~~-k 121 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFE--GSLIPELKRFV-----GGNPVLLVGNKIDLLPKSVNLSKIKEWMKKRA-K 121 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCC--CCccHHHHHHh-----CCCCEEEEEEchhhCCCCCCHHHHHHHHHHHH-H
Confidence 5677888888888999999999997653 22222333332 36799999999999743 23333322211000 0
Q ss_pred cCCCcccCCCCCCccEEEEEEeeecCCChhHHHHhhhh
Q 029453 153 TGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQ 190 (193)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~ 190 (193)
. . .....+++.+||++|.|++++++.|.+
T Consensus 122 ~-~--------g~~~~~i~~vSAk~g~gv~eL~~~l~~ 150 (360)
T TIGR03597 122 E-L--------GLKPVDIILVSAKKGNGIDELLDKIKK 150 (360)
T ss_pred H-c--------CCCcCcEEEecCCCCCCHHHHHHHHHH
Confidence 0 0 001135899999999999999999865
No 362
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.63 E-value=7.6e-07 Score=67.89 Aligned_cols=129 Identities=23% Similarity=0.256 Sum_probs=84.5
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCccc----cCCCCCcceeEEEe-------------------------C------
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQ----HQPTQYPTSEELSI-------------------------G------ 62 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~~----~~~t~~~~~~~~~~-------------------------~------ 62 (193)
..++=|.++|+=..|||||++-+....+.. .+||...-...+.. +
T Consensus 56 d~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnR 135 (532)
T KOG1954|consen 56 DAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNR 135 (532)
T ss_pred ccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHH
Confidence 356679999999999999999999887763 23333221111110 0
Q ss_pred -------C---eEEEEEEcCChhh-----------hHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCC
Q 029453 63 -------K---IKFKAFDLGGHQM-----------ARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALAD 121 (193)
Q Consensus 63 -------~---~~~~~~D~~g~~~-----------~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (193)
+ ..+.++||||.-. |.....=+.+++|.+++++|+...+.=.+....+..+.. ..
T Consensus 136 f~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG----~E 211 (532)
T KOG1954|consen 136 FMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKG----HE 211 (532)
T ss_pred HHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhC----Cc
Confidence 1 3578999999322 222333345789999999999866544455555555533 34
Q ss_pred CcEEEEeeCCCCCCCCCHHHHHHhhCCCcccc
Q 029453 122 VPFLILGNKIDIPYAASEDELRYHMGLTNFTT 153 (193)
Q Consensus 122 ~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 153 (193)
-.+=||+||.|.. ..+|+...++...|.-
T Consensus 212 dkiRVVLNKADqV---dtqqLmRVyGALmWsl 240 (532)
T KOG1954|consen 212 DKIRVVLNKADQV---DTQQLMRVYGALMWSL 240 (532)
T ss_pred ceeEEEecccccc---CHHHHHHHHHHHHHhh
Confidence 5678899999964 5567777777666543
No 363
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=98.62 E-value=4.5e-08 Score=80.19 Aligned_cols=108 Identities=20% Similarity=0.174 Sum_probs=74.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcc---------------ccCCCCCccee--EEEe--CCeEEEEEEcCChhhhHHhH
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLV---------------QHQPTQYPTSE--ELSI--GKIKFKAFDLGGHQMARRVW 81 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~---------------~~~~t~~~~~~--~~~~--~~~~~~~~D~~g~~~~~~~~ 81 (193)
=+++++.+..-|||||+..+....-. ..+.+++.+.+ .++. +++.+.++|+|||..|.+..
T Consensus 10 rn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf~sev 89 (887)
T KOG0467|consen 10 RNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDFSSEV 89 (887)
T ss_pred eEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccchhhhh
Confidence 37899999999999999998643321 01123333322 2333 67889999999999999988
Q ss_pred HhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCC
Q 029453 82 KDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDI 133 (193)
Q Consensus 82 ~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl 133 (193)
.....-+|+++.++|+.++-.-+. ..++++....+..+++|+||+|.
T Consensus 90 ssas~l~d~alvlvdvvegv~~qt-----~~vlrq~~~~~~~~~lvinkidr 136 (887)
T KOG0467|consen 90 SSASRLSDGALVLVDVVEGVCSQT-----YAVLRQAWIEGLKPILVINKIDR 136 (887)
T ss_pred hhhhhhcCCcEEEEeeccccchhH-----HHHHHHHHHccCceEEEEehhhh
Confidence 888888999999999976521121 12222222246778999999993
No 364
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.62 E-value=7.5e-07 Score=60.32 Aligned_cols=110 Identities=19% Similarity=0.253 Sum_probs=59.0
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCC--eEEEEEEcC-C---------------------
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGK--IKFKAFDLG-G--------------------- 73 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~D~~-g--------------------- 73 (193)
....||++.|+||+||||++.++...-........+.-...++-++ .-|.++|+. |
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~V~ 82 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYGVN 82 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEEee
Confidence 3567999999999999999998863221111111112222233222 235555554 2
Q ss_pred ---hh-hhHHhHHhhhccCCEEEEEEeCCChhh--HHHHHHHHHHHHhCCCCCCCcEEEEeeCCCC
Q 029453 74 ---HQ-MARRVWKDYYAKVDAVVYLIDAYDKER--FSESKRELDALLSDEALADVPFLILGNKIDI 133 (193)
Q Consensus 74 ---~~-~~~~~~~~~~~~~d~ii~v~d~~~~~~--~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl 133 (193)
.+ ........+++.+|++|+ |---+=- -..+......++. .++|++.++++.+.
T Consensus 83 v~~le~i~~~al~rA~~~aDvIII--DEIGpMElks~~f~~~ve~vl~----~~kpliatlHrrsr 142 (179)
T COG1618 83 VEGLEEIAIPALRRALEEADVIII--DEIGPMELKSKKFREAVEEVLK----SGKPLIATLHRRSR 142 (179)
T ss_pred HHHHHHHhHHHHHHHhhcCCEEEE--ecccchhhccHHHHHHHHHHhc----CCCcEEEEEecccC
Confidence 11 112333445566786655 6543300 1234444555543 47899999988764
No 365
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.62 E-value=1.8e-06 Score=62.97 Aligned_cols=118 Identities=14% Similarity=-0.011 Sum_probs=67.4
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcC--Ccccc----CCCCCcceeEEEe---CCeEEEEEEcCChhhhH------HhH
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDE--RLVQH----QPTQYPTSEELSI---GKIKFKAFDLGGHQMAR------RVW 81 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~--~~~~~----~~t~~~~~~~~~~---~~~~~~~~D~~g~~~~~------~~~ 81 (193)
..+-.-|+++|++++|||+|+|++++. .+... ..|.+.-...... .+..+.++||||..... ...
T Consensus 4 ~~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~ 83 (224)
T cd01851 4 GFPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDAR 83 (224)
T ss_pred CCCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhH
Confidence 345567999999999999999999988 44321 1233333333333 35789999999954221 111
Q ss_pred Hhhhcc--CCEEEEEEeCCChhhHHHHHHHHHHH---------HhCCCCCCCcEEEEeeCCCCC
Q 029453 82 KDYYAK--VDAVVYLIDAYDKERFSESKRELDAL---------LSDEALADVPFLILGNKIDIP 134 (193)
Q Consensus 82 ~~~~~~--~d~ii~v~d~~~~~~~~~~~~~~~~~---------~~~~~~~~~pviiv~nK~Dl~ 134 (193)
...+.. ++++||..+.............+... ...........++++-..++.
T Consensus 84 ~~~l~~llss~~i~n~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~ll~vvRD~~~~ 147 (224)
T cd01851 84 LFALATLLSSVLIYNSWETILGDDLAALMGLLKTTLEVLGLAGLTEFEKPKPLLLFVVRDFSLD 147 (224)
T ss_pred HHHHHHHHhCEEEEeccCcccHHHHHHHHHHHHHHHHhhhhhhhhhcccCCCceEEEEecCcCC
Confidence 122223 78999988886532222222222211 111223445577777666654
No 366
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.61 E-value=1.3e-07 Score=66.01 Aligned_cols=57 Identities=18% Similarity=0.286 Sum_probs=39.4
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccccCCC--CCcceeEEEeCCeEEEEEEcCCh
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPT--QYPTSEELSIGKIKFKAFDLGGH 74 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t--~~~~~~~~~~~~~~~~~~D~~g~ 74 (193)
....++++++|.+|+|||||+|++.+.......+. .......+..+ ..+.++||||.
T Consensus 112 ~~~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~~-~~~~~iDtpG~ 170 (171)
T cd01856 112 LPRGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKIS-PGIYLLDTPGI 170 (171)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEec-CCEEEEECCCC
Confidence 34567999999999999999999998776433221 11222223333 45789999994
No 367
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=98.58 E-value=6.5e-07 Score=63.19 Aligned_cols=126 Identities=18% Similarity=0.237 Sum_probs=73.6
Q ss_pred CeEEEEEEcCChhhhHH---hHH---hhhc---cCCEEEEEEeCC---Ch-hhHHHHHHHHHHHHhCCCCCCCcEEEEee
Q 029453 63 KIKFKAFDLGGHQMARR---VWK---DYYA---KVDAVVYLIDAY---DK-ERFSESKRELDALLSDEALADVPFLILGN 129 (193)
Q Consensus 63 ~~~~~~~D~~g~~~~~~---~~~---~~~~---~~d~ii~v~d~~---~~-~~~~~~~~~~~~~~~~~~~~~~pviiv~n 129 (193)
...+-+.|+|||-+... ..+ ..++ ---+++|++|.. +. .-+.+....+..... -..|-|=|++
T Consensus 97 eddylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi~----lE~P~INvls 172 (273)
T KOG1534|consen 97 EDDYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMIS----LEVPHINVLS 172 (273)
T ss_pred cCCEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHHHH----hcCcchhhhh
Confidence 35688999999764321 111 1122 245778888874 21 223344444444443 3789999999
Q ss_pred CCCCCCCCCHHHHHHhhCCCccccCC-CcccCCC--------------CCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 130 KIDIPYAASEDELRYHMGLTNFTTGK-GNVNLDN--------------TNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 130 K~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--------------~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
|+||.....++++...++........ ...+..+ ....-++++|.-..+.+.++.++..|..++
T Consensus 173 KMDLlk~~~k~~l~~Fl~~d~~~l~~~~~~~~~s~Kf~~L~~~i~~~v~d~~Mv~FlPl~~~~eeSi~~iL~~ID~ai 250 (273)
T KOG1534|consen 173 KMDLLKDKNKKELERFLNPDEYLLLEDSEINLRSPKFKKLTKCIAQLVDDYSMVNFLPLDSSDEESINIILSYIDDAI 250 (273)
T ss_pred HHHHhhhhhHHHHHHhcCCchhhhhcccccccccHHHHHHHHHHHHHhccccceeeeecCCCCHHHHHHHHHHHHHHH
Confidence 99998777777777776644321111 0000000 011235788888888888888888876543
No 368
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=98.58 E-value=5.5e-08 Score=74.56 Aligned_cols=161 Identities=16% Similarity=0.091 Sum_probs=98.9
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCc-----------------------cc-----------cCCCCCcceeEEEeC
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERL-----------------------VQ-----------HQPTQYPTSEELSIG 62 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~-----------------------~~-----------~~~t~~~~~~~~~~~ 62 (193)
.+...++.|+|...+||||+-.++....- .+ ...|.+.....++-.
T Consensus 76 pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte 155 (501)
T KOG0459|consen 76 PKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETE 155 (501)
T ss_pred CCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEec
Confidence 46789999999999999998877641100 00 011333445566667
Q ss_pred CeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCChhh---HHH--HHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCC
Q 029453 63 KIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKER---FSE--SKRELDALLSDEALADVPFLILGNKIDIPYAA 137 (193)
Q Consensus 63 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~---~~~--~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~ 137 (193)
...+.+.|.|||..|...+-....++|..++|+.+...+. |.. .......+..- ..-...++++||+|-+...
T Consensus 156 ~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt--~gv~~lVv~vNKMddPtvn 233 (501)
T KOG0459|consen 156 NKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT--AGVKHLIVLINKMDDPTVN 233 (501)
T ss_pred ceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHh--hccceEEEEEEeccCCccC
Confidence 8899999999999888776667788999999999854321 111 11222222211 1346789999999987332
Q ss_pred CHHHH----HHhhCCCccccCCCcccCCCCCCccEEEEEEeeecCCChhHHHH
Q 029453 138 SEDEL----RYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFK 186 (193)
Q Consensus 138 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~ 186 (193)
...+. ...+.... .. . --.......++++|..+|.++++..+
T Consensus 234 Ws~eRy~E~~~k~~~fL-r~-~-----g~n~~~d~~f~p~sg~tG~~~k~~~~ 279 (501)
T KOG0459|consen 234 WSNERYEECKEKLQPFL-RK-L-----GFNPKPDKHFVPVSGLTGANVKDRTD 279 (501)
T ss_pred cchhhHHHHHHHHHHHH-HH-h-----cccCCCCceeeecccccccchhhccc
Confidence 22221 11111100 00 0 00112456899999999999987654
No 369
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.58 E-value=3.4e-07 Score=66.34 Aligned_cols=96 Identities=19% Similarity=0.219 Sum_probs=66.9
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCcc--ccC-CCCCcceeEEEeCCeEEEEEEcCChhhhHHhH-------HhhhccC
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERLV--QHQ-PTQYPTSEELSIGKIKFKAFDLGGHQMARRVW-------KDYYAKV 88 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~~--~~~-~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~-------~~~~~~~ 88 (193)
-..||+++|.|.+|||||+..+...... .++ .|-......+.+++..+.+.|+||.-+..+.- .+.-+.+
T Consensus 61 GdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGRGRQviavArta 140 (364)
T KOG1486|consen 61 GDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGRGRQVIAVARTA 140 (364)
T ss_pred CCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCceEEEecCcccccccccCCCCCceEEEEeecc
Confidence 4569999999999999999998765433 222 24445567788999999999999954332221 1223468
Q ss_pred CEEEEEEeCCChhhHH-HHHHHHHHHH
Q 029453 89 DAVVYLIDAYDKERFS-ESKRELDALL 114 (193)
Q Consensus 89 d~ii~v~d~~~~~~~~-~~~~~~~~~~ 114 (193)
|.+++|.|++..+... -+...+..+-
T Consensus 141 DlilMvLDatk~e~qr~~le~ELe~vG 167 (364)
T KOG1486|consen 141 DLILMVLDATKSEDQREILEKELEAVG 167 (364)
T ss_pred cEEEEEecCCcchhHHHHHHHHHHHhc
Confidence 9999999998765433 3555555553
No 370
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.57 E-value=4.5e-07 Score=62.50 Aligned_cols=22 Identities=36% Similarity=0.505 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 029453 22 KILFLGLDNSGKTTLLHMLKDE 43 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~ 43 (193)
-+.++|+.|||||||++++...
T Consensus 2 ~~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 2 VTVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred EEEEEECCCCCHHHHHHHHHhc
Confidence 4679999999999999998754
No 371
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.57 E-value=1.6e-07 Score=64.51 Aligned_cols=55 Identities=22% Similarity=0.347 Sum_probs=38.9
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCcccc--CC--CCCcceeEEEeCCeEEEEEEcCCh
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQH--QP--TQYPTSEELSIGKIKFKAFDLGGH 74 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~--~~--t~~~~~~~~~~~~~~~~~~D~~g~ 74 (193)
.....+++++|.+|+||||++|.+.+...... .+ |..... +..+ ..+.++||||.
T Consensus 97 ~~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~--~~~~-~~~~liDtPG~ 155 (155)
T cd01849 97 LKKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQE--VKLD-NKIKLLDTPGI 155 (155)
T ss_pred cccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEE--EEec-CCEEEEECCCC
Confidence 34678999999999999999999998764322 22 333332 3333 45889999993
No 372
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.48 E-value=2e-06 Score=65.84 Aligned_cols=109 Identities=20% Similarity=0.148 Sum_probs=60.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCccc-------cCCCCC-------------cceeEE-------------------
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERLVQ-------HQPTQY-------------PTSEEL------------------- 59 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~~~-------~~~t~~-------------~~~~~~------------------- 59 (193)
+...++++|++|+||||++..+...-... ...+.. .....+
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~ 192 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAA 192 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 45689999999999999998874221100 000100 000000
Q ss_pred EeCCeEEEEEEcCChhhhHH----hHHh---hh-----ccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEE
Q 029453 60 SIGKIKFKAFDLGGHQMARR----VWKD---YY-----AKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLIL 127 (193)
Q Consensus 60 ~~~~~~~~~~D~~g~~~~~~----~~~~---~~-----~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv 127 (193)
...++++.++||||...... .... .+ ..++..++|+|++... ..+. ....+... -.+.-++
T Consensus 193 ~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~--~~~~-~a~~f~~~----~~~~giI 265 (318)
T PRK10416 193 KARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ--NALS-QAKAFHEA----VGLTGII 265 (318)
T ss_pred HhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh--HHHH-HHHHHHhh----CCCCEEE
Confidence 11356899999999532111 1111 11 2467889999998642 2222 23333221 1345788
Q ss_pred eeCCCCC
Q 029453 128 GNKIDIP 134 (193)
Q Consensus 128 ~nK~Dl~ 134 (193)
+||.|..
T Consensus 266 lTKlD~t 272 (318)
T PRK10416 266 LTKLDGT 272 (318)
T ss_pred EECCCCC
Confidence 9999975
No 373
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.47 E-value=2e-06 Score=64.46 Aligned_cols=66 Identities=17% Similarity=0.111 Sum_probs=39.4
Q ss_pred CCeEEEEEEcCChhhhHHh----HH---hhhc-----cCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEee
Q 029453 62 GKIKFKAFDLGGHQMARRV----WK---DYYA-----KVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGN 129 (193)
Q Consensus 62 ~~~~~~~~D~~g~~~~~~~----~~---~~~~-----~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~n 129 (193)
.++++.++||||....... .. ...+ .+|..++|+|++... ... .....+.+.. .+--+++|
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~--~~~-~~~~~f~~~~----~~~g~IlT 225 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQ--NAL-EQAKVFNEAV----GLTGIILT 225 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCH--HHH-HHHHHHHhhC----CCCEEEEE
Confidence 3578999999995432211 11 1111 378999999997542 222 3334443221 24688899
Q ss_pred CCCCC
Q 029453 130 KIDIP 134 (193)
Q Consensus 130 K~Dl~ 134 (193)
|.|..
T Consensus 226 KlDe~ 230 (272)
T TIGR00064 226 KLDGT 230 (272)
T ss_pred ccCCC
Confidence 99986
No 374
>PRK14974 cell division protein FtsY; Provisional
Probab=98.47 E-value=2e-06 Score=66.08 Aligned_cols=66 Identities=17% Similarity=0.116 Sum_probs=38.7
Q ss_pred CeEEEEEEcCChhhh----HHhHHhhh--ccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC
Q 029453 63 KIKFKAFDLGGHQMA----RRVWKDYY--AKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY 135 (193)
Q Consensus 63 ~~~~~~~D~~g~~~~----~~~~~~~~--~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~ 135 (193)
+.++.++||+|.... -....... -+.|..++|+|+...+ ........+... -..--+++||.|...
T Consensus 222 ~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~---d~~~~a~~f~~~----~~~~giIlTKlD~~~ 293 (336)
T PRK14974 222 GIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGN---DAVEQAREFNEA----VGIDGVILTKVDADA 293 (336)
T ss_pred CCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccch---hHHHHHHHHHhc----CCCCEEEEeeecCCC
Confidence 467899999995421 11112221 2578899999997652 333333333221 123578899999863
No 375
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.45 E-value=1.2e-06 Score=77.81 Aligned_cols=113 Identities=19% Similarity=0.152 Sum_probs=66.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-c----CCC--CCcceeEEEeCCeEEEEEEcCChh--------hhHHhHHhhh
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLVQ-H----QPT--QYPTSEELSIGKIKFKAFDLGGHQ--------MARRVWKDYY 85 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~~-~----~~t--~~~~~~~~~~~~~~~~~~D~~g~~--------~~~~~~~~~~ 85 (193)
+=.+++|++||||||+++.- +-.+.- . ..+ .+.+...-.+-..+-.++||+|.- .....|..++
T Consensus 112 PWYlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~wwf~~~avliDtaG~y~~~~~~~~~~~~~W~~fL 190 (1169)
T TIGR03348 112 PWYLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDWWFTDEAVLIDTAGRYTTQDSDPEEDAAAWLGFL 190 (1169)
T ss_pred CCEEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccceEecCCEEEEcCCCccccCCCcccccHHHHHHHH
Confidence 34789999999999999986 333321 1 111 111221111223455699999921 1223344333
Q ss_pred ---------ccCCEEEEEEeCCCh-----hhH----HHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC
Q 029453 86 ---------AKVDAVVYLIDAYDK-----ERF----SESKRELDALLSDEALADVPFLILGNKIDIPY 135 (193)
Q Consensus 86 ---------~~~d~ii~v~d~~~~-----~~~----~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~ 135 (193)
+..+++|+++|+.+. +.. ..+...+.++... .....||.+++||+|+.+
T Consensus 191 ~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~-lg~~~PVYvv~Tk~Dll~ 257 (1169)
T TIGR03348 191 GLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQ-LGARFPVYLVLTKADLLA 257 (1169)
T ss_pred HHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHH-hCCCCCEEEEEecchhhc
Confidence 248999999999742 111 2233444444332 235899999999999873
No 376
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.44 E-value=2.2e-07 Score=63.65 Aligned_cols=56 Identities=18% Similarity=0.175 Sum_probs=34.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccccCC-----CCCc----ceeEEEeCCeEEEEEEcCChhhh
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLVQHQP-----TQYP----TSEELSIGKIKFKAFDLGGHQMA 77 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~-----t~~~----~~~~~~~~~~~~~~~D~~g~~~~ 77 (193)
..++++|++|||||||+|.+.+.....+.. ..+. ....+.... ...++||||...+
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~-g~~iIDTPGf~~~ 100 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPD-GGYIIDTPGFRSF 100 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETT-SEEEECSHHHHT-
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCC-CcEEEECCCCCcc
Confidence 589999999999999999999875332211 1111 222334422 3468899996654
No 377
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=98.44 E-value=5.5e-08 Score=75.05 Aligned_cols=124 Identities=16% Similarity=0.073 Sum_probs=87.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCcc----------c-------cC----CCCCcceeEEEeCCeEEEEEEcCChhhhHHh
Q 029453 22 KILFLGLDNSGKTTLLHMLKDERLV----------Q-------HQ----PTQYPTSEELSIGKIKFKAFDLGGHQMARRV 80 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~~~~----------~-------~~----~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~ 80 (193)
+|+++..-.+||||.-.++..-.-. . .+ -|.......+.+.+..+.++|||||..|.-.
T Consensus 39 nigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf~le 118 (753)
T KOG0464|consen 39 NIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDFRLE 118 (753)
T ss_pred cceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceEEEE
Confidence 7999999999999999997522110 0 00 1333344567788999999999999999888
Q ss_pred HHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC---CCCHHHHHHhhCCCc
Q 029453 81 WKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY---AASEDELRYHMGLTN 150 (193)
Q Consensus 81 ~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~---~~~~~~~~~~~~~~~ 150 (193)
.+.+++-.|+++.|+|++-+-.-+.+..|-+ ....++|-+..+||+|+.- ....+.+++.++...
T Consensus 119 verclrvldgavav~dasagve~qtltvwrq-----adk~~ip~~~finkmdk~~anfe~avdsi~ekl~ak~ 186 (753)
T KOG0464|consen 119 VERCLRVLDGAVAVFDASAGVEAQTLTVWRQ-----ADKFKIPAHCFINKMDKLAANFENAVDSIEEKLGAKA 186 (753)
T ss_pred HHHHHHHhcCeEEEEeccCCcccceeeeehh-----ccccCCchhhhhhhhhhhhhhhhhHHHHHHHHhCCce
Confidence 8889999999999999986532233333322 2335899999999999862 233344666666544
No 378
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=3.6e-06 Score=68.69 Aligned_cols=115 Identities=17% Similarity=0.238 Sum_probs=71.7
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCcccc--CC-------------------CCC--------------------c-
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQH--QP-------------------TQY--------------------P- 54 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~--~~-------------------t~~--------------------~- 54 (193)
...+.||+|.|..++||||++|.+...+..+. .+ +.+ .
T Consensus 106 ~r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~ 185 (749)
T KOG0448|consen 106 ARRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKD 185 (749)
T ss_pred hhcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcccc
Confidence 56788999999999999999999864432210 00 000 0
Q ss_pred ----ceeEEEeC-------CeEEEEEEcCCh---hhhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCC
Q 029453 55 ----TSEELSIG-------KIKFKAFDLGGH---QMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALA 120 (193)
Q Consensus 55 ----~~~~~~~~-------~~~~~~~D~~g~---~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~ 120 (193)
....+-++ .-++.++|.||. .....+.-.+...+|++|+|.++-+. +....+.+...... .
T Consensus 186 ~~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEnt--lt~sek~Ff~~vs~---~ 260 (749)
T KOG0448|consen 186 LGAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENT--LTLSEKQFFHKVSE---E 260 (749)
T ss_pred cCcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccH--hHHHHHHHHHHhhc---c
Confidence 00001111 136889999994 34555666677889999999998665 44444433333333 2
Q ss_pred CCcEEEEeeCCCCCCC
Q 029453 121 DVPFLILGNKIDIPYA 136 (193)
Q Consensus 121 ~~pviiv~nK~Dl~~~ 136 (193)
..-+.|+-||+|....
T Consensus 261 KpniFIlnnkwDasas 276 (749)
T KOG0448|consen 261 KPNIFILNNKWDASAS 276 (749)
T ss_pred CCcEEEEechhhhhcc
Confidence 3446777789998744
No 379
>PRK12288 GTPase RsgA; Reviewed
Probab=98.40 E-value=3.9e-07 Score=70.43 Aligned_cols=55 Identities=16% Similarity=0.123 Sum_probs=34.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccccCC-----CCCcc----eeEEEeCCeEEEEEEcCChhhh
Q 029453 22 KILFLGLDNSGKTTLLHMLKDERLVQHQP-----TQYPT----SEELSIGKIKFKAFDLGGHQMA 77 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~-----t~~~~----~~~~~~~~~~~~~~D~~g~~~~ 77 (193)
.++|+|.+|||||||+|.|.+.....+.. ..+.. ...+.+++ ...++||||...+
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~-~~~liDTPGir~~ 270 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPH-GGDLIDSPGVREF 270 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecC-CCEEEECCCCCcc
Confidence 47999999999999999999776443211 11111 11223322 1248999997654
No 380
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.38 E-value=3.2e-06 Score=60.94 Aligned_cols=112 Identities=18% Similarity=0.225 Sum_probs=64.2
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCcccc--CC--------CCCc--ceeEEEeCC--eEEEEEEcCChhhh---H-
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQH--QP--------TQYP--TSEELSIGK--IKFKAFDLGGHQMA---R- 78 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~--~~--------t~~~--~~~~~~~~~--~~~~~~D~~g~~~~---~- 78 (193)
..-.++|.++|.+|.|||||+|.++....... .+ |... ....+.-++ ..+.++||||.... .
T Consensus 43 ~GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~n 122 (336)
T KOG1547|consen 43 TGFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDN 122 (336)
T ss_pred ccCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccc
Confidence 34578999999999999999999976554321 11 1111 112222233 46889999993321 1
Q ss_pred ----------HhHHhhh------------c--cCCEEEEEEeCCChhhHHHHH-HHHHHHHhCCCCCCCcEEEEeeCCCC
Q 029453 79 ----------RVWKDYY------------A--KVDAVVYLIDAYDKERFSESK-RELDALLSDEALADVPFLILGNKIDI 133 (193)
Q Consensus 79 ----------~~~~~~~------------~--~~d~ii~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~pviiv~nK~Dl 133 (193)
.....|+ . ++++.+|.+..+-- ++..++ ..+..+.. -.-++-|+-|.|-
T Consensus 123 cWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGh-sLrplDieflkrLt~-----vvNvvPVIakaDt 196 (336)
T KOG1547|consen 123 CWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGH-SLRPLDIEFLKRLTE-----VVNVVPVIAKADT 196 (336)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCC-ccCcccHHHHHHHhh-----hheeeeeEeeccc
Confidence 1112222 1 47899999888632 222222 22222321 2347888899996
Q ss_pred C
Q 029453 134 P 134 (193)
Q Consensus 134 ~ 134 (193)
.
T Consensus 197 l 197 (336)
T KOG1547|consen 197 L 197 (336)
T ss_pred c
Confidence 5
No 381
>PRK13796 GTPase YqeH; Provisional
Probab=98.35 E-value=1.6e-06 Score=67.69 Aligned_cols=100 Identities=18% Similarity=0.304 Sum_probs=58.4
Q ss_pred hhhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCC-CHHHHHHhhCCCcccc
Q 029453 75 QMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAA-SEDELRYHMGLTNFTT 153 (193)
Q Consensus 75 ~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~-~~~~~~~~~~~~~~~~ 153 (193)
+.+.......-...+.+++|+|+.+.. ......+..+. .+.|+++|+||+|+.+.. ..+++.+.+.... ..
T Consensus 57 ~~~~~~l~~i~~~~~lIv~VVD~~D~~--~s~~~~L~~~~-----~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~-k~ 128 (365)
T PRK13796 57 DDFLKLLNGIGDSDALVVNVVDIFDFN--GSWIPGLHRFV-----GNNPVLLVGNKADLLPKSVKKNKVKNWLRQEA-KE 128 (365)
T ss_pred HHHHHHHHhhcccCcEEEEEEECccCC--CchhHHHHHHh-----CCCCEEEEEEchhhCCCccCHHHHHHHHHHHH-Hh
Confidence 345555444333344999999998742 22233333332 267999999999997432 2222222111000 00
Q ss_pred CCCcccCCCCCCccEEEEEEeeecCCChhHHHHhhhhh
Q 029453 154 GKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQY 191 (193)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~ 191 (193)
......+++.+||+++.|++++++.|.+.
T Consensus 129 ---------~g~~~~~v~~vSAk~g~gI~eL~~~I~~~ 157 (365)
T PRK13796 129 ---------LGLRPVDVVLISAQKGHGIDELLEAIEKY 157 (365)
T ss_pred ---------cCCCcCcEEEEECCCCCCHHHHHHHHHHh
Confidence 00012368999999999999999998653
No 382
>PRK12289 GTPase RsgA; Reviewed
Probab=98.35 E-value=9.2e-07 Score=68.46 Aligned_cols=53 Identities=15% Similarity=0.091 Sum_probs=33.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccccCCC-----CC----cceeEEEeCCeEEEEEEcCChh
Q 029453 22 KILFLGLDNSGKTTLLHMLKDERLVQHQPT-----QY----PTSEELSIGKIKFKAFDLGGHQ 75 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~t-----~~----~~~~~~~~~~~~~~~~D~~g~~ 75 (193)
.++|+|++|+|||||+|.+.+.....+... .+ .....+...+. ..++||||..
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g-~~liDTPG~~ 235 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPNG-GLLADTPGFN 235 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCCC-cEEEeCCCcc
Confidence 489999999999999999987654422211 11 12233333221 2689999954
No 383
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.34 E-value=2.5e-06 Score=67.36 Aligned_cols=108 Identities=17% Similarity=0.146 Sum_probs=61.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHh------cCCcc-ccCCCC-----------C--cceeEEE-------------------
Q 029453 20 EAKILFLGLDNSGKTTLLHMLK------DERLV-QHQPTQ-----------Y--PTSEELS------------------- 60 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~------~~~~~-~~~~t~-----------~--~~~~~~~------------------- 60 (193)
...|+++|++||||||++..+. +.+.. ....++ . .....+.
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~ 179 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFK 179 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHH
Confidence 4679999999999999999885 21111 000010 0 0000010
Q ss_pred eCCeEEEEEEcCChhhhHH----hHHhh--hccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC
Q 029453 61 IGKIKFKAFDLGGHQMARR----VWKDY--YAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIP 134 (193)
Q Consensus 61 ~~~~~~~~~D~~g~~~~~~----~~~~~--~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~ 134 (193)
..++++.++||+|...... ..... ..+++.+++|+|+.-++ ........+.. .-.+--+++||.|..
T Consensus 180 ~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq---~a~~~a~~F~~----~~~~~g~IlTKlD~~ 252 (429)
T TIGR01425 180 KENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQ---AAEAQAKAFKD----SVDVGSVIITKLDGH 252 (429)
T ss_pred hCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccCh---hHHHHHHHHHh----ccCCcEEEEECccCC
Confidence 0256899999999543221 11111 12478899999997652 22333333321 124567889999986
No 384
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=98.34 E-value=6.9e-07 Score=70.60 Aligned_cols=57 Identities=21% Similarity=0.222 Sum_probs=45.5
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeC-CeEEEEEEcCC
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIG-KIKFKAFDLGG 73 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~D~~g 73 (193)
......|+++|.||+||||+||.|.+.+...++.|.+-+.+..++- .-.+.+.||||
T Consensus 311 ~~~~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~ls~~v~LCDCPG 368 (562)
T KOG1424|consen 311 YKDVVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFLSPSVCLCDCPG 368 (562)
T ss_pred CCceeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEcCCCceecCCCC
Confidence 3446899999999999999999999999988877777665444331 34567889999
No 385
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=98.33 E-value=1e-05 Score=61.84 Aligned_cols=81 Identities=22% Similarity=0.200 Sum_probs=44.7
Q ss_pred eEEEEEEcCChhhhHHhHHhhhc--------cCCEEEEEEeCCChhhHHH-HHHHHHHHHhCCCCCCCcEEEEeeCCCCC
Q 029453 64 IKFKAFDLGGHQMARRVWKDYYA--------KVDAVVYLIDAYDKERFSE-SKRELDALLSDEALADVPFLILGNKIDIP 134 (193)
Q Consensus 64 ~~~~~~D~~g~~~~~~~~~~~~~--------~~d~ii~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~pviiv~nK~Dl~ 134 (193)
.+..++++.|..........+.. ..|.++-|+|+.+...... .......-+ ...+ ++++||+|+.
T Consensus 85 ~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qi---a~AD---~ivlNK~Dlv 158 (323)
T COG0523 85 PDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQL---AFAD---VIVLNKTDLV 158 (323)
T ss_pred CCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHH---HhCc---EEEEecccCC
Confidence 45677788885443333333222 3588999999976422111 111111111 1122 8999999998
Q ss_pred CCCCHHHHHHhhCCCc
Q 029453 135 YAASEDELRYHMGLTN 150 (193)
Q Consensus 135 ~~~~~~~~~~~~~~~~ 150 (193)
.+...+.++..+....
T Consensus 159 ~~~~l~~l~~~l~~ln 174 (323)
T COG0523 159 DAEELEALEARLRKLN 174 (323)
T ss_pred CHHHHHHHHHHHHHhC
Confidence 6655555555554444
No 386
>PRK01889 GTPase RsgA; Reviewed
Probab=98.28 E-value=6e-06 Score=64.32 Aligned_cols=84 Identities=19% Similarity=0.148 Sum_probs=54.6
Q ss_pred hccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCC
Q 029453 85 YAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTN 164 (193)
Q Consensus 85 ~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (193)
..++|.+++|+++..+-....+...+..... .++|.++|+||+||.+. .++..+.+....
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~----~~i~piIVLNK~DL~~~--~~~~~~~~~~~~-------------- 169 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWE----SGAEPVIVLTKADLCED--AEEKIAEVEALA-------------- 169 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHH----cCCCEEEEEEChhcCCC--HHHHHHHHHHhC--------------
Confidence 3678999999999643222334444444322 47788999999999753 211111111111
Q ss_pred CccEEEEEEeeecCCChhHHHHhhh
Q 029453 165 VRPLEVFMCSIVRKMGYGEGFKWLS 189 (193)
Q Consensus 165 ~~~~~~~~~Sa~~~~gi~~~~~~i~ 189 (193)
...+++.+|++++.|++++.++|.
T Consensus 170 -~g~~Vi~vSa~~g~gl~~L~~~L~ 193 (356)
T PRK01889 170 -PGVPVLAVSALDGEGLDVLAAWLS 193 (356)
T ss_pred -CCCcEEEEECCCCccHHHHHHHhh
Confidence 224789999999999999999985
No 387
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.26 E-value=1.3e-06 Score=64.58 Aligned_cols=53 Identities=19% Similarity=0.121 Sum_probs=35.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccccC-----------CCCCcceeEEEeCCeEEEEEEcCChhhh
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLVQHQ-----------PTQYPTSEELSIGKIKFKAFDLGGHQMA 77 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~-----------~t~~~~~~~~~~~~~~~~~~D~~g~~~~ 77 (193)
..++++|++|+|||||+|.+.+.....+. .|..... +...+ ..++||||...+
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l--~~l~~--~~liDtPG~~~~ 184 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVEL--FHFHG--GLIADTPGFNEF 184 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEE--EEcCC--cEEEeCCCcccc
Confidence 47899999999999999999876533211 1222222 33322 268999997543
No 388
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.25 E-value=2.1e-06 Score=66.99 Aligned_cols=107 Identities=15% Similarity=0.211 Sum_probs=56.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCc-----cccCCCCCcc--eeEEEeCCeEEEEEEcCChhhhHHhHHhhh--------
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERL-----VQHQPTQYPT--SEELSIGKIKFKAFDLGGHQMARRVWKDYY-------- 85 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~-----~~~~~t~~~~--~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~-------- 85 (193)
.+++++|.+|+|||||+|++.+... .......+.+ ...+..+ ..+.++||||......+. .++
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~-~~~~l~DtPG~~~~~~~~-~~l~~~~l~~~ 232 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLD-DGHSLYDTPGIINSHQMA-HYLDKKDLKYI 232 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeC-CCCEEEECCCCCChhHhh-hhcCHHHHhhc
Confidence 5899999999999999999987532 1111111212 2223331 245799999965332211 111
Q ss_pred ---ccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC
Q 029453 86 ---AKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIP 134 (193)
Q Consensus 86 ---~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~ 134 (193)
+......++++....-.+.+ ..++. ++. .....+.+..++.+..
T Consensus 233 ~~~~~i~~~~~~l~~~q~~~~gg-l~~~d-~~~---~~~~~~~~~~~~~~~~ 279 (360)
T TIGR03597 233 TPKKEIKPKTYQLNPNQTLFLGG-LARFD-YLK---GEKTSFTFYVSNELNI 279 (360)
T ss_pred CCCCccCceEEEeCCCCEEEEce-EEEEE-Eec---CCceEEEEEccCCcee
Confidence 23566777776643211111 11111 111 1245567777777655
No 389
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=98.19 E-value=8.7e-05 Score=58.10 Aligned_cols=136 Identities=20% Similarity=0.265 Sum_probs=75.9
Q ss_pred HHHHhCCCCcccEEEEEcCCCCCHHHHHHHHhc-----------------CCcc---------ccCCCCCcce-eEEEeC
Q 029453 10 ILVSLGLWQKEAKILFLGLDNSGKTTLLHMLKD-----------------ERLV---------QHQPTQYPTS-EELSIG 62 (193)
Q Consensus 10 ~~~~~~~~~~~~~i~i~G~~~~GKssl~~~l~~-----------------~~~~---------~~~~t~~~~~-~~~~~~ 62 (193)
+..-..+..-.+=|+++||..+|||||+++|.. ++.+ +++|...|+. ..+..+
T Consensus 7 ykDIa~RT~GdIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~ 86 (492)
T PF09547_consen 7 YKDIAERTGGDIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLD 86 (492)
T ss_pred HHHHHHhcCCceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEec
Confidence 333344566788899999999999999999851 1111 2233333332 334443
Q ss_pred ---CeEEEEEEcCCh--------hh-----------------hHHhH----Hhhhc--cCCEEEEEEeCCC----hhhHH
Q 029453 63 ---KIKFKAFDLGGH--------QM-----------------ARRVW----KDYYA--KVDAVVYLIDAYD----KERFS 104 (193)
Q Consensus 63 ---~~~~~~~D~~g~--------~~-----------------~~~~~----~~~~~--~~d~ii~v~d~~~----~~~~~ 104 (193)
...++++||.|. .+ |...- ++.+. ..=+++.--|.+- ++.+.
T Consensus 87 ~~~~~kVRLiDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~ 166 (492)
T PF09547_consen 87 DGIKVKVRLIDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYV 166 (492)
T ss_pred CCceEEEEEEeecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHH
Confidence 368899999871 11 00000 00111 1234555555541 33333
Q ss_pred HHH-HHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCc
Q 029453 105 ESK-RELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTN 150 (193)
Q Consensus 105 ~~~-~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~ 150 (193)
.+. ....++-. -++|.++++|-.+- ......++..++...+
T Consensus 167 eAEervI~ELk~----igKPFvillNs~~P-~s~et~~L~~eL~ekY 208 (492)
T PF09547_consen 167 EAEERVIEELKE----IGKPFVILLNSTKP-YSEETQELAEELEEKY 208 (492)
T ss_pred HHHHHHHHHHHH----hCCCEEEEEeCCCC-CCHHHHHHHHHHHHHh
Confidence 333 44444433 38999999998873 3444456777776665
No 390
>PRK13796 GTPase YqeH; Provisional
Probab=98.19 E-value=5.5e-06 Score=64.76 Aligned_cols=55 Identities=20% Similarity=0.290 Sum_probs=34.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCc-----ccc--CCCCCcceeEEEeCCeEEEEEEcCChh
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDERL-----VQH--QPTQYPTSEELSIGKIKFKAFDLGGHQ 75 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~~~-----~~~--~~t~~~~~~~~~~~~~~~~~~D~~g~~ 75 (193)
..++.++|.+|||||||+|++..... ... .|.+......+..++ ...++||||..
T Consensus 160 ~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~-~~~l~DTPGi~ 221 (365)
T PRK13796 160 GRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDD-GSFLYDTPGII 221 (365)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCC-CcEEEECCCcc
Confidence 45899999999999999999985431 111 121112222233322 24699999963
No 391
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.18 E-value=2.9e-05 Score=55.40 Aligned_cols=66 Identities=14% Similarity=0.061 Sum_probs=36.7
Q ss_pred CeEEEEEEcCChhhhHH----hHHhhhc--cCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC
Q 029453 63 KIKFKAFDLGGHQMARR----VWKDYYA--KVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY 135 (193)
Q Consensus 63 ~~~~~~~D~~g~~~~~~----~~~~~~~--~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~ 135 (193)
+.++.++||+|...... .+..++. ..+-+++|++++... ..+. ......... + +--+++||.|...
T Consensus 83 ~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~--~~~~-~~~~~~~~~---~-~~~lIlTKlDet~ 154 (196)
T PF00448_consen 83 GYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQ--EDLE-QALAFYEAF---G-IDGLILTKLDETA 154 (196)
T ss_dssp TSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGG--HHHH-HHHHHHHHS---S-TCEEEEESTTSSS
T ss_pred CCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccCh--HHHH-HHHHHhhcc---c-CceEEEEeecCCC
Confidence 46799999999433221 1122211 578899999998653 2222 233332221 1 2356699999863
No 392
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.18 E-value=1.8e-06 Score=64.57 Aligned_cols=23 Identities=35% Similarity=0.489 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 029453 22 KILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
..+++|.+|+|||||+|+|.+..
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~ 188 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPEL 188 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchh
Confidence 78899999999999999998644
No 393
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=98.17 E-value=5.8e-06 Score=56.32 Aligned_cols=58 Identities=12% Similarity=0.175 Sum_probs=34.9
Q ss_pred CeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCC
Q 029453 63 KIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKID 132 (193)
Q Consensus 63 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D 132 (193)
+.++.++||+|..... ...+..+|-++++....-.+.. ..... ..+ ...=++++||+|
T Consensus 91 ~~D~iiIDtaG~~~~~---~~~~~~Ad~~ivv~tpe~~D~y--~~~k~-~~~------~~~~~~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVGQSE---VDIASMADTTVVVMAPGAGDDI--QAIKA-GIM------EIADIVVVNKAD 148 (148)
T ss_pred CCCEEEEECCccChhh---hhHHHhCCEEEEEECCCchhHH--HHhhh-hHh------hhcCEEEEeCCC
Confidence 5688899998865322 2356778988888887633211 11111 121 122388899998
No 394
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.16 E-value=1.1e-05 Score=62.88 Aligned_cols=117 Identities=13% Similarity=0.080 Sum_probs=62.0
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCccc---------cCCCC---------------CcceeEE-----------EeC
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQ---------HQPTQ---------------YPTSEEL-----------SIG 62 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~~---------~~~t~---------------~~~~~~~-----------~~~ 62 (193)
.+.-.++++|++||||||++..+....... ...+. +...... .+.
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~ 214 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELR 214 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhc
Confidence 345689999999999999999985321100 00011 1011111 123
Q ss_pred CeEEEEEEcCChhhhHH----hHHhh--hccCCEEEEEEeCCCh-hhHHHHHHHHHHHHhCCCCC-CCcEEEEeeCCCCC
Q 029453 63 KIKFKAFDLGGHQMARR----VWKDY--YAKVDAVVYLIDAYDK-ERFSESKRELDALLSDEALA-DVPFLILGNKIDIP 134 (193)
Q Consensus 63 ~~~~~~~D~~g~~~~~~----~~~~~--~~~~d~ii~v~d~~~~-~~~~~~~~~~~~~~~~~~~~-~~pviiv~nK~Dl~ 134 (193)
+..+.++||+|...... ..... .....-.++|++++.. +.+......+.......... ..+--+++||.|..
T Consensus 215 ~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt 294 (374)
T PRK14722 215 NKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEA 294 (374)
T ss_pred CCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccC
Confidence 57889999999553222 12211 1234556889999764 33333333333332110000 01345778999986
No 395
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=98.11 E-value=3.1e-05 Score=59.35 Aligned_cols=23 Identities=43% Similarity=0.573 Sum_probs=19.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDE 43 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~ 43 (193)
+-..+.|.-|||||||+|++...
T Consensus 5 pv~iltGFLGaGKTTll~~ll~~ 27 (318)
T PRK11537 5 AVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_pred CEEEEEECCCCCHHHHHHHHHhc
Confidence 45678999999999999999743
No 396
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=98.10 E-value=9.9e-06 Score=58.31 Aligned_cols=77 Identities=21% Similarity=0.251 Sum_probs=44.8
Q ss_pred eEEEEEEc-CChhhhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHH
Q 029453 64 IKFKAFDL-GGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDEL 142 (193)
Q Consensus 64 ~~~~~~D~-~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~ 142 (193)
.++.++|| .|.+.|.+ ...+.+|.+|.|+|.+-.. +. ....+..+.+... -+++.+|+||+|.. .....+.
T Consensus 134 ~e~VivDtEAGiEHfgR---g~~~~vD~vivVvDpS~~s-l~-taeri~~L~~elg--~k~i~~V~NKv~e~-e~~~~~~ 205 (255)
T COG3640 134 YEVVIVDTEAGIEHFGR---GTIEGVDLVIVVVDPSYKS-LR-TAERIKELAEELG--IKRIFVVLNKVDEE-EELLREL 205 (255)
T ss_pred CcEEEEecccchhhhcc---ccccCCCEEEEEeCCcHHH-HH-HHHHHHHHHHHhC--CceEEEEEeeccch-hHHHHhh
Confidence 45555665 34444332 2346799999999998653 32 2334444444321 38999999999964 2233344
Q ss_pred HHhhCC
Q 029453 143 RYHMGL 148 (193)
Q Consensus 143 ~~~~~~ 148 (193)
...++.
T Consensus 206 ~~~~~~ 211 (255)
T COG3640 206 AEELGL 211 (255)
T ss_pred hhccCC
Confidence 444444
No 397
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=98.10 E-value=2.7e-05 Score=43.40 Aligned_cols=47 Identities=21% Similarity=0.330 Sum_probs=29.8
Q ss_pred hhccCCEEEEEEeCCCh--hhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCC
Q 029453 84 YYAKVDAVVYLIDAYDK--ERFSESKRELDALLSDEALADVPFLILGNKID 132 (193)
Q Consensus 84 ~~~~~d~ii~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D 132 (193)
.-+-.++++|++|.+.. .+++.....+.++...+ .++|+++|+||+|
T Consensus 10 L~hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F--~~~P~i~V~nK~D 58 (58)
T PF06858_consen 10 LAHLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLF--PNKPVIVVLNKID 58 (58)
T ss_dssp GGGT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHT--TTS-EEEEE--TT
T ss_pred HHhhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHc--CCCCEEEEEeccC
Confidence 33458999999999974 45666666677765543 4899999999998
No 398
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.10 E-value=4.9e-06 Score=62.97 Aligned_cols=56 Identities=16% Similarity=0.140 Sum_probs=35.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccccCC-----CCC----cceeEEEeCCeEEEEEEcCChhhh
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLVQHQP-----TQY----PTSEELSIGKIKFKAFDLGGHQMA 77 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~-----t~~----~~~~~~~~~~~~~~~~D~~g~~~~ 77 (193)
..++++|++|+|||||+|.+.+........ ..+ .....+...+ ...++||||...+
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~-~~~liDtPG~~~~ 226 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPG-GGLLIDTPGFREF 226 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCC-CCEEEECCCCCcc
Confidence 579999999999999999998765432111 011 1112233321 2258999998654
No 399
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.08 E-value=0.00013 Score=51.22 Aligned_cols=87 Identities=17% Similarity=0.185 Sum_probs=48.3
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCeEEEEE-E---cC-ChhhhHHhHHhhhccCCEEE
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAF-D---LG-GHQMARRVWKDYYAKVDAVV 92 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~-D---~~-g~~~~~~~~~~~~~~~d~ii 92 (193)
.+.-.++++|++|||||||++.+.+-... ....+.+++..+... . .. |+.+........+.++++++
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--------~~G~i~~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lll 94 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQLIP--------NGDNDEWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYL 94 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCCCC--------CCcEEEECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 35558999999999999999999875422 223333333222211 1 22 34444444445566666555
Q ss_pred EEEeCC----ChhhHHHHHHHHHHHH
Q 029453 93 YLIDAY----DKERFSESKRELDALL 114 (193)
Q Consensus 93 ~v~d~~----~~~~~~~~~~~~~~~~ 114 (193)
+ |-- |+.....+..++..+.
T Consensus 95 L--DEPts~LD~~~~~~l~~~l~~~~ 118 (177)
T cd03222 95 F--DEPSAYLDIEQRLNAARAIRRLS 118 (177)
T ss_pred E--ECCcccCCHHHHHHHHHHHHHHH
Confidence 4 542 3443444555555553
No 400
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=98.07 E-value=1.1e-05 Score=56.75 Aligned_cols=68 Identities=18% Similarity=0.183 Sum_probs=38.8
Q ss_pred eEEEEEEcCChhhhHHh--HHhh---hccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCC
Q 029453 64 IKFKAFDLGGHQMARRV--WKDY---YAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAA 137 (193)
Q Consensus 64 ~~~~~~D~~g~~~~~~~--~~~~---~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~ 137 (193)
.++.++++.|....... .... .-..+.++.|+|+.+..........+..-+.. .+ ++++||+|+.+..
T Consensus 85 ~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~---AD---vIvlnK~D~~~~~ 157 (178)
T PF02492_consen 85 PDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAF---AD---VIVLNKIDLVSDE 157 (178)
T ss_dssp -SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT----S---EEEEE-GGGHHHH
T ss_pred cCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcchh---cC---EEEEeccccCChh
Confidence 46777888884433333 1111 12468999999997753333444444444322 23 8899999997544
No 401
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=98.06 E-value=2.8e-05 Score=54.35 Aligned_cols=65 Identities=17% Similarity=0.150 Sum_probs=38.6
Q ss_pred CeEEEEEEcCChhhh----HHhHHhhh--ccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC
Q 029453 63 KIKFKAFDLGGHQMA----RRVWKDYY--AKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIP 134 (193)
Q Consensus 63 ~~~~~~~D~~g~~~~----~~~~~~~~--~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~ 134 (193)
+..+.++|+||.... ........ ...+.+++|+|+.... ........+.+.. + ..-+++||.|..
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~---~~~~~~~~~~~~~---~-~~~viltk~D~~ 152 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQ---DAVNQAKAFNEAL---G-ITGVILTKLDGD 152 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCCh---HHHHHHHHHHhhC---C-CCEEEEECCcCC
Confidence 456888999996422 11111111 2489999999997543 2223444443222 2 356778999986
No 402
>PRK00098 GTPase RsgA; Reviewed
Probab=98.05 E-value=1.2e-05 Score=61.09 Aligned_cols=56 Identities=18% Similarity=0.142 Sum_probs=35.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccccCC-----CCC----cceeEEEeCCeEEEEEEcCChhh
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDERLVQHQP-----TQY----PTSEELSIGKIKFKAFDLGGHQM 76 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~-----t~~----~~~~~~~~~~~~~~~~D~~g~~~ 76 (193)
...++++|++|+|||||+|.+.+........ ..+ .....+...+ ...++||||...
T Consensus 164 gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~-~~~~~DtpG~~~ 228 (298)
T PRK00098 164 GKVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPG-GGLLIDTPGFSS 228 (298)
T ss_pred CceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCC-CcEEEECCCcCc
Confidence 3479999999999999999998765432211 011 1122222322 236899999754
No 403
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.04 E-value=2e-05 Score=61.56 Aligned_cols=109 Identities=16% Similarity=0.077 Sum_probs=60.2
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCc-----c--ccCCCC---------------CcceeEE-------------E-eC
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERL-----V--QHQPTQ---------------YPTSEEL-------------S-IG 62 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~-----~--~~~~t~---------------~~~~~~~-------------~-~~ 62 (193)
+...|+++|++||||||++..+...-. . ....+. +...... . ..
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~ 319 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 319 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhcc
Confidence 446899999999999999999852110 0 000000 0000000 0 01
Q ss_pred CeEEEEEEcCChhhh----HHhHHhhh--ccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC
Q 029453 63 KIKFKAFDLGGHQMA----RRVWKDYY--AKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIP 134 (193)
Q Consensus 63 ~~~~~~~D~~g~~~~----~~~~~~~~--~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~ 134 (193)
+.++.++||+|.... -......+ ...+.+++|+|++-.. ..+......+- . -..--+++||.|..
T Consensus 320 ~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~--~d~~~i~~~F~-~----~~idglI~TKLDET 390 (436)
T PRK11889 320 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--KDMIEIITNFK-D----IHIDGIVFTKFDET 390 (436)
T ss_pred CCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccCh--HHHHHHHHHhc-C----CCCCEEEEEcccCC
Confidence 358899999995321 11122222 2357788999986431 33444444442 1 12346789999986
No 404
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.04 E-value=1.7e-05 Score=69.37 Aligned_cols=112 Identities=18% Similarity=0.210 Sum_probs=65.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccccC-----CCCCcceeEE-EeCCeEEEEEEcCC----h----hhhHHhHHhh---
Q 029453 22 KILFLGLDNSGKTTLLHMLKDERLVQHQ-----PTQYPTSEEL-SIGKIKFKAFDLGG----H----QMARRVWKDY--- 84 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~~~~~~~-----~t~~~~~~~~-~~~~~~~~~~D~~g----~----~~~~~~~~~~--- 84 (193)
=..|+|++|+||||++..-. -.+.-.. ......+..+ .+-+.+-.++||.| + +.....|..+
T Consensus 127 Wy~viG~pgsGKTtal~~sg-l~Fpl~~~~~~~~~~~~gT~~cdwwf~deaVlIDtaGry~~q~s~~~~~~~~W~~fL~l 205 (1188)
T COG3523 127 WYMVIGPPGSGKTTALLNSG-LQFPLAEQMGALGLAGPGTRNCDWWFTDEAVLIDTAGRYITQDSADEVDRAEWLGFLGL 205 (1188)
T ss_pred ceEEecCCCCCcchHHhccc-ccCcchhhhccccccCCCCcccCcccccceEEEcCCcceecccCcchhhHHHHHHHHHH
Confidence 35799999999999987632 2222110 1111112222 23345677899998 2 1223344433
Q ss_pred ------hccCCEEEEEEeCCCh-----h-h---HHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC
Q 029453 85 ------YAKVDAVVYLIDAYDK-----E-R---FSESKRELDALLSDEALADVPFLILGNKIDIPY 135 (193)
Q Consensus 85 ------~~~~d~ii~v~d~~~~-----~-~---~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~ 135 (193)
.+..+++|+.+|+++. . . ...+..-+.++. ..-....||.+++||.|+.+
T Consensus 206 Lkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~-~tL~~~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 206 LKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELR-ETLHARLPVYLVLTKADLLP 270 (1188)
T ss_pred HHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHH-HhhccCCceEEEEecccccc
Confidence 2358999999999742 1 1 112333344443 22335799999999999975
No 405
>KOG2484 consensus GTPase [General function prediction only]
Probab=98.03 E-value=3.8e-06 Score=64.62 Aligned_cols=56 Identities=20% Similarity=0.341 Sum_probs=43.3
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcce--eEEEeCCeEEEEEEcCC
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTS--EELSIGKIKFKAFDLGG 73 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~D~~g 73 (193)
.+++++++|+|.|++||||++|++.........++.+.+. ..+.. ...+.+.|.||
T Consensus 249 lk~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~smqeV~L-dk~i~llDsPg 306 (435)
T KOG2484|consen 249 LKTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRSMQEVKL-DKKIRLLDSPG 306 (435)
T ss_pred cCcceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhhhhheec-cCCceeccCCc
Confidence 4688999999999999999999999888765555444443 33333 34688999999
No 406
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.02 E-value=0.00011 Score=59.08 Aligned_cols=24 Identities=25% Similarity=0.311 Sum_probs=20.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
+.--++++|++||||||.+..|.+
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~ 278 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAA 278 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHH
Confidence 345799999999999999998863
No 407
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.98 E-value=2.4e-05 Score=61.88 Aligned_cols=109 Identities=12% Similarity=0.008 Sum_probs=60.1
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCc-----cc----cCCCC---------------Cccee-----------EEEeCC
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERL-----VQ----HQPTQ---------------YPTSE-----------ELSIGK 63 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~-----~~----~~~t~---------------~~~~~-----------~~~~~~ 63 (193)
+.-+++++|++|+||||++..+.+... .. ...+. +.... .....+
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~ 269 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRG 269 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcC
Confidence 456899999999999999998754210 00 00010 00000 011235
Q ss_pred eEEEEEEcCChhhhH----HhHHhhh--ccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC
Q 029453 64 IKFKAFDLGGHQMAR----RVWKDYY--AKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIP 134 (193)
Q Consensus 64 ~~~~~~D~~g~~~~~----~~~~~~~--~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~ 134 (193)
....++||+|..... ....... ....-.++|+|++.. .+.+......+. . --.--+++||.|..
T Consensus 270 ~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~--~~~~~~~~~~f~-~----~~~~~~I~TKlDEt 339 (420)
T PRK14721 270 KHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSS--GDTLDEVISAYQ-G----HGIHGCIITKVDEA 339 (420)
T ss_pred CCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCC--HHHHHHHHHHhc-C----CCCCEEEEEeeeCC
Confidence 678999999944321 2222221 224567888999754 233444443331 1 12346778999975
No 408
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.98 E-value=1.9e-06 Score=69.41 Aligned_cols=110 Identities=17% Similarity=0.084 Sum_probs=74.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCcc----ccC-----------------CCCCcceeEEEeCCeEEEEEEcCChhhhH
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDERLV----QHQ-----------------PTQYPTSEELSIGKIKFKAFDLGGHQMAR 78 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~~~~----~~~-----------------~t~~~~~~~~~~~~~~~~~~D~~g~~~~~ 78 (193)
--+|++.-.-.+||||+-+++....-. ... -|.......+.+.+..+.++|||||-.|-
T Consensus 39 ~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDFT 118 (721)
T KOG0465|consen 39 IRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDFT 118 (721)
T ss_pred hcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeEE
Confidence 347889999999999999997532210 000 02222334556678899999999999887
Q ss_pred HhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC
Q 029453 79 RVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIP 134 (193)
Q Consensus 79 ~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~ 134 (193)
-.....+.-.|+.++|+|+..+-.- .....++...+ .++|-+..+||+|..
T Consensus 119 ~EVeRALrVlDGaVlvl~aV~GVqs-Qt~tV~rQ~~r----y~vP~i~FiNKmDRm 169 (721)
T KOG0465|consen 119 FEVERALRVLDGAVLVLDAVAGVES-QTETVWRQMKR----YNVPRICFINKMDRM 169 (721)
T ss_pred EEehhhhhhccCeEEEEEcccceeh-hhHHHHHHHHh----cCCCeEEEEehhhhc
Confidence 7777778889999999998765211 12222233322 489999999999964
No 409
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.96 E-value=4.4e-05 Score=58.86 Aligned_cols=112 Identities=20% Similarity=0.277 Sum_probs=62.9
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHHhc--------------CCccc-------cCCCC--Ccce----------------
Q 029453 16 LWQKEAKILFLGLDNSGKTTLLHMLKD--------------ERLVQ-------HQPTQ--YPTS---------------- 56 (193)
Q Consensus 16 ~~~~~~~i~i~G~~~~GKssl~~~l~~--------------~~~~~-------~~~t~--~~~~---------------- 56 (193)
...+.--|.++|-.|+||||.+-.+.. +.|-. ...+. .|-.
T Consensus 97 ~K~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv 176 (483)
T KOG0780|consen 97 KKGKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGV 176 (483)
T ss_pred ccCCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHH
Confidence 344566799999999999999988741 11100 00000 1111
Q ss_pred eEEEeCCeEEEEEEcCChh-hhHHhHHhhh-----ccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeC
Q 029453 57 EELSIGKIKFKAFDLGGHQ-MARRVWKDYY-----AKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNK 130 (193)
Q Consensus 57 ~~~~~~~~~~~~~D~~g~~-~~~~~~~~~~-----~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK 130 (193)
..+.-+++++.++||.|.. ...+++.... -+.|-+|+|+|++-.+.-......+...... --+++||
T Consensus 177 ~~fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aFk~~vdv-------g~vIlTK 249 (483)
T KOG0780|consen 177 DRFKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAFKETVDV-------GAVILTK 249 (483)
T ss_pred HHHHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHHHHhhcc-------ceEEEEe
Confidence 1122247899999999943 2233333222 1579999999998764333333333333211 1345677
Q ss_pred CCCC
Q 029453 131 IDIP 134 (193)
Q Consensus 131 ~Dl~ 134 (193)
.|-.
T Consensus 250 lDGh 253 (483)
T KOG0780|consen 250 LDGH 253 (483)
T ss_pred cccC
Confidence 7754
No 410
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.96 E-value=2.9e-05 Score=62.75 Aligned_cols=110 Identities=18% Similarity=0.235 Sum_probs=60.0
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcC--------Ccc-ccCCCCC---------------cceeEE-----------EeC
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDE--------RLV-QHQPTQY---------------PTSEEL-----------SIG 62 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~--------~~~-~~~~t~~---------------~~~~~~-----------~~~ 62 (193)
.+.-.++|+|++|+||||++..|... +.. ....+.. ...... ...
T Consensus 348 ~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~ 427 (559)
T PRK12727 348 ERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLR 427 (559)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhc
Confidence 35668999999999999999887531 110 0000100 000000 113
Q ss_pred CeEEEEEEcCChhhhHHhHHh---hhc--cCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC
Q 029453 63 KIKFKAFDLGGHQMARRVWKD---YYA--KVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIP 134 (193)
Q Consensus 63 ~~~~~~~D~~g~~~~~~~~~~---~~~--~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~ 134 (193)
+.++.++||+|.......... .+. .....++|++.+.. ...+...+..+.. ..+.-+|+||.|..
T Consensus 428 ~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAtss--~~Dl~eii~~f~~-----~~~~gvILTKlDEt 497 (559)
T PRK12727 428 DYKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANAH--FSDLDEVVRRFAH-----AKPQGVVLTKLDET 497 (559)
T ss_pred cCCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCCC--hhHHHHHHHHHHh-----hCCeEEEEecCcCc
Confidence 578899999995432211100 011 12345677777643 3444444444421 24677999999985
No 411
>PRK13695 putative NTPase; Provisional
Probab=97.93 E-value=0.00018 Score=50.31 Aligned_cols=21 Identities=38% Similarity=0.390 Sum_probs=19.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHh
Q 029453 21 AKILFLGLDNSGKTTLLHMLK 41 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~ 41 (193)
.+|+++|++|+|||||+..+.
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~ 21 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIA 21 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 489999999999999999864
No 412
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.92 E-value=7.6e-05 Score=62.98 Aligned_cols=111 Identities=13% Similarity=0.067 Sum_probs=59.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc---------cCCCCC---------------cceeEE-----------EeCCe
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDERLVQ---------HQPTQY---------------PTSEEL-----------SIGKI 64 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~~~~~---------~~~t~~---------------~~~~~~-----------~~~~~ 64 (193)
.-.++|+|+.||||||.+..+.+..... ...+.. ...... ...+.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~ 264 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDK 264 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCC
Confidence 3478999999999999999886432100 000110 000000 12356
Q ss_pred EEEEEEcCChh----hhHHhHHhh--hccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC
Q 029453 65 KFKAFDLGGHQ----MARRVWKDY--YAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIP 134 (193)
Q Consensus 65 ~~~~~D~~g~~----~~~~~~~~~--~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~ 134 (193)
++.++||+|.. ......... ....+-.++|+|++.. .+.+......+.... .-.+-=+++||.|..
T Consensus 265 D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~--~~~l~~i~~~f~~~~--~~~i~glIlTKLDEt 336 (767)
T PRK14723 265 HLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASH--GDTLNEVVHAYRHGA--GEDVDGCIITKLDEA 336 (767)
T ss_pred CEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCc--HHHHHHHHHHHhhcc--cCCCCEEEEeccCCC
Confidence 89999999932 111222221 1245678899999753 223333333331110 002346779999986
No 413
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.86 E-value=8e-05 Score=58.05 Aligned_cols=109 Identities=17% Similarity=0.141 Sum_probs=59.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCc-ccc--------CCCCCc---------------ceeE-----------EEeCC
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERL-VQH--------QPTQYP---------------TSEE-----------LSIGK 63 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~-~~~--------~~t~~~---------------~~~~-----------~~~~~ 63 (193)
+.-.|+++||.|+||||-+-.|..... ... ..|+.. .... ....+
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~ 281 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRD 281 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhc
Confidence 467899999999999999887743322 000 001100 0000 01135
Q ss_pred eEEEEEEcCChhhhHH----hHHhhhccC--CEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC
Q 029453 64 IKFKAFDLGGHQMARR----VWKDYYAKV--DAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIP 134 (193)
Q Consensus 64 ~~~~~~D~~g~~~~~~----~~~~~~~~~--d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~ 134 (193)
+++.++||.|...... .+..++..+ .-.-+|++++.. ...+...+..+.. -+ .--+++||.|..
T Consensus 282 ~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K--~~dlkei~~~f~~----~~-i~~~I~TKlDET 351 (407)
T COG1419 282 CDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK--YEDLKEIIKQFSL----FP-IDGLIFTKLDET 351 (407)
T ss_pred CCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc--hHHHHHHHHHhcc----CC-cceeEEEccccc
Confidence 7899999999554332 233333322 334456666544 3455555555521 11 225668999975
No 414
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.85 E-value=0.00011 Score=58.68 Aligned_cols=108 Identities=18% Similarity=0.111 Sum_probs=58.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCc-------cc--cCCCCC---------------cceeE-----------EEeCCe
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDERL-------VQ--HQPTQY---------------PTSEE-----------LSIGKI 64 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~~~-------~~--~~~t~~---------------~~~~~-----------~~~~~~ 64 (193)
.-.++|+|++||||||++-.+..... .. ...+.. ..... -...+.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~~~ 300 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLRDC 300 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhCCC
Confidence 34799999999999998877642211 10 000100 00000 011357
Q ss_pred EEEEEEcCChhhhH----HhHHhhhc---cCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC
Q 029453 65 KFKAFDLGGHQMAR----RVWKDYYA---KVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIP 134 (193)
Q Consensus 65 ~~~~~D~~g~~~~~----~~~~~~~~---~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~ 134 (193)
++.++||+|..... ..+...+. ...-..+|++++-. ...+...+..+- . .+ +--+++||.|..
T Consensus 301 DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~--~~~l~~~~~~f~-~---~~-~~~vI~TKlDet 370 (424)
T PRK05703 301 DVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTK--YEDLKDIYKHFS-R---LP-LDGLIFTKLDET 370 (424)
T ss_pred CEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCC--HHHHHHHHHHhC-C---CC-CCEEEEeccccc
Confidence 89999999954221 22233333 23466788888644 234444444441 1 11 236889999985
No 415
>PRK10867 signal recognition particle protein; Provisional
Probab=97.84 E-value=0.00029 Score=56.19 Aligned_cols=80 Identities=14% Similarity=0.072 Sum_probs=43.5
Q ss_pred CeEEEEEEcCChhhh----HHhHHhh--hccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC-C
Q 029453 63 KIKFKAFDLGGHQMA----RRVWKDY--YAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIP-Y 135 (193)
Q Consensus 63 ~~~~~~~D~~g~~~~----~~~~~~~--~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~-~ 135 (193)
++++.++||+|.... -...... .-.++.+++|+|+... +........+... -...-+|+||.|.. +
T Consensus 183 ~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g---q~av~~a~~F~~~----~~i~giIlTKlD~~~r 255 (433)
T PRK10867 183 GYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG---QDAVNTAKAFNEA----LGLTGVILTKLDGDAR 255 (433)
T ss_pred CCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH---HHHHHHHHHHHhh----CCCCEEEEeCccCccc
Confidence 467899999994321 1111111 1256788999998754 3333444444221 11235777999965 3
Q ss_pred CCCHHHHHHhhCCC
Q 029453 136 AASEDELRYHMGLT 149 (193)
Q Consensus 136 ~~~~~~~~~~~~~~ 149 (193)
....-.+....+.+
T Consensus 256 gG~alsi~~~~~~P 269 (433)
T PRK10867 256 GGAALSIRAVTGKP 269 (433)
T ss_pred ccHHHHHHHHHCcC
Confidence 33344455555444
No 416
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.83 E-value=4.8e-05 Score=50.45 Aligned_cols=97 Identities=20% Similarity=0.238 Sum_probs=51.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCeEEEEEEcCC------------------------hh
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGG------------------------HQ 75 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g------------------------~~ 75 (193)
.--+.+.|++|+|||++++++............ ...+..++.+. ..
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~ 73 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKN----------HPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSD 73 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCC----------CEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccC----------CCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHH
Confidence 345789999999999999998764322100000 11111222211 12
Q ss_pred hhHHhHHhhhccCCEEEEEEeCCChh-hHHHHHHHHHHHHhCCCCCCCcEEEEeeC
Q 029453 76 MARRVWKDYYAKVDAVVYLIDAYDKE-RFSESKRELDALLSDEALADVPFLILGNK 130 (193)
Q Consensus 76 ~~~~~~~~~~~~~d~ii~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~pviiv~nK 130 (193)
.........+......++++|-.+.= + ......+..+.+ ..+.+++++++-
T Consensus 74 ~l~~~~~~~l~~~~~~~lviDe~~~l~~-~~~l~~l~~l~~---~~~~~vvl~G~~ 125 (131)
T PF13401_consen 74 ELRSLLIDALDRRRVVLLVIDEADHLFS-DEFLEFLRSLLN---ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHHHHHHHHCTEEEEEEETTHHHHT-HHHHHHHHHHTC---SCBEEEEEEESS
T ss_pred HHHHHHHHHHHhcCCeEEEEeChHhcCC-HHHHHHHHHHHh---CCCCeEEEEECh
Confidence 22233344455666688899976542 1 233444444433 467888888864
No 417
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=97.82 E-value=0.00017 Score=55.90 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=19.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDE 43 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~ 43 (193)
.-..+.|.-|||||||++++...
T Consensus 5 pv~iltGFLGaGKTTll~~ll~~ 27 (341)
T TIGR02475 5 PVTIVTGFLGAGKTTLIRHLLQN 27 (341)
T ss_pred CEEEEEECCCCCHHHHHHHHHhc
Confidence 34778999999999999999743
No 418
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.80 E-value=0.00017 Score=54.19 Aligned_cols=87 Identities=17% Similarity=0.087 Sum_probs=58.6
Q ss_pred hccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHH--HHHhhCCCccccCCCcccCCC
Q 029453 85 YAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDE--LRYHMGLTNFTTGKGNVNLDN 162 (193)
Q Consensus 85 ~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 162 (193)
..+.|-+++|+.+.+|+--......+..+... .++..++++||+||.......+ ....+...
T Consensus 77 v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~---~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~------------- 140 (301)
T COG1162 77 VANNDQAIIVVSLVDPDFNTNLLDRYLVLAEA---GGIEPVIVLNKIDLLDDEEAAVKELLREYEDI------------- 140 (301)
T ss_pred ccccceEEEEEeccCCCCCHHHHHHHHHHHHH---cCCcEEEEEEccccCcchHHHHHHHHHHHHhC-------------
Confidence 34578888888888875333333333333333 5777888899999986555442 32233211
Q ss_pred CCCccEEEEEEeeecCCChhHHHHhhhhh
Q 029453 163 TNVRPLEVFMCSIVRKMGYGEGFKWLSQY 191 (193)
Q Consensus 163 ~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~ 191 (193)
..+++.+|++++.|++++.+++...
T Consensus 141 ----gy~v~~~s~~~~~~~~~l~~~l~~~ 165 (301)
T COG1162 141 ----GYPVLFVSAKNGDGLEELAELLAGK 165 (301)
T ss_pred ----CeeEEEecCcCcccHHHHHHHhcCC
Confidence 2589999999999999999998754
No 419
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=97.79 E-value=2.8e-05 Score=54.33 Aligned_cols=99 Identities=16% Similarity=0.143 Sum_probs=50.8
Q ss_pred CEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCc----cccCCC--cccCCC
Q 029453 89 DAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTN----FTTGKG--NVNLDN 162 (193)
Q Consensus 89 d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~----~~~~~~--~~~~~~ 162 (193)
|++++|+|+.++. ......+...+. ....++|+++|+||+|+.+.....++...+.... +..... ...+..
T Consensus 1 DvVl~VvDar~p~--~~~~~~i~~~~~-l~~~~kp~IlVlNK~DL~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (172)
T cd04178 1 DVILEVLDARDPL--GCRCPQVEEAVL-QAGGNKKLVLVLNKIDLVPKENVEKWLKYLRREFPTVAFKASTQSQKKNLGQ 77 (172)
T ss_pred CEEEEEEECCCCC--CCCCHHHHHHHH-hccCCCCEEEEEehhhcCCHHHHHHHHHHHHhhCCEEEEEecccccccchhh
Confidence 7899999998762 111122222211 1114689999999999975444444444443322 111000 000000
Q ss_pred CC--CccEEEEEEeeecCCChhHHHHhhhh
Q 029453 163 TN--VRPLEVFMCSIVRKMGYGEGFKWLSQ 190 (193)
Q Consensus 163 ~~--~~~~~~~~~Sa~~~~gi~~~~~~i~~ 190 (193)
.. ........+|+..+.|.+++++.+.+
T Consensus 78 ~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~ 107 (172)
T cd04178 78 KSVKVEAASADLLRSSVCFGADCLLKLLKN 107 (172)
T ss_pred cccccchhhhhhhhhccccCHHHHHHHHHH
Confidence 00 00122344577788888888777644
No 420
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.78 E-value=6.6e-05 Score=59.84 Aligned_cols=109 Identities=25% Similarity=0.146 Sum_probs=59.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcC-----Ccc--ccCCCC---------------CcceeEE---------------Ee
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDE-----RLV--QHQPTQ---------------YPTSEEL---------------SI 61 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~-----~~~--~~~~t~---------------~~~~~~~---------------~~ 61 (193)
+...|+++|++|+||||++..+... ... ....+. +...... ..
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~~ 173 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEKF 173 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHh
Confidence 4668999999999999999887421 000 000000 0000000 00
Q ss_pred CCeEEEEEEcCChhhhHHhH----Hh--hhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC
Q 029453 62 GKIKFKAFDLGGHQMARRVW----KD--YYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIP 134 (193)
Q Consensus 62 ~~~~~~~~D~~g~~~~~~~~----~~--~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~ 134 (193)
...++.++||+|........ .. ..-.+|.+++|+|++... ........+... -..--+++||.|..
T Consensus 174 ~~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~av~~a~~F~~~----l~i~gvIlTKlD~~ 245 (437)
T PRK00771 174 KKADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QAKNQAKAFHEA----VGIGGIIITKLDGT 245 (437)
T ss_pred hcCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HHHHHHHHHHhc----CCCCEEEEecccCC
Confidence 13478999999954332111 11 123578999999997652 333333333111 11246778999975
No 421
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=97.78 E-value=2e-05 Score=56.69 Aligned_cols=67 Identities=22% Similarity=0.329 Sum_probs=38.4
Q ss_pred CeEEEEEEcCChhhh-------HHhHHhhhcc---CCEEEEEEeC---CChhhHHH-HHHHHHHHHhCCCCCCCcEEEEe
Q 029453 63 KIKFKAFDLGGHQMA-------RRVWKDYYAK---VDAVVYLIDA---YDKERFSE-SKRELDALLSDEALADVPFLILG 128 (193)
Q Consensus 63 ~~~~~~~D~~g~~~~-------~~~~~~~~~~---~d~ii~v~d~---~~~~~~~~-~~~~~~~~~~~~~~~~~pviiv~ 128 (193)
...+.+.|+|||-++ ..... .+++ .-+++-++|. +++..+-. ...-+..++. ...|-+=|+
T Consensus 96 ~~~Y~lFDcPGQVELft~h~~l~~I~~-~Lek~~~rl~~V~LiDs~ycs~p~~~iS~lL~sl~tMl~----melphVNvl 170 (290)
T KOG1533|consen 96 TDHYVLFDCPGQVELFTHHDSLNKIFR-KLEKLDYRLVAVNLIDSHYCSDPSKFISSLLVSLATMLH----MELPHVNVL 170 (290)
T ss_pred cCcEEEEeCCCcEEEEeccchHHHHHH-HHHHcCceEEEEEeeeceeeCChHHHHHHHHHHHHHHHh----hcccchhhh
Confidence 457889999997543 11211 2222 3355666676 35544332 2233333332 467888999
Q ss_pred eCCCCC
Q 029453 129 NKIDIP 134 (193)
Q Consensus 129 nK~Dl~ 134 (193)
.|+|+.
T Consensus 171 SK~Dl~ 176 (290)
T KOG1533|consen 171 SKADLL 176 (290)
T ss_pred hHhHHH
Confidence 999985
No 422
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=97.77 E-value=2.2e-05 Score=60.61 Aligned_cols=69 Identities=17% Similarity=0.325 Sum_probs=47.2
Q ss_pred HHHHHHHHHHhCCCCcccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcce--eEEEeCCeEEEEEEcCCh
Q 029453 4 VDWFYGILVSLGLWQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTS--EELSIGKIKFKAFDLGGH 74 (193)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~D~~g~ 74 (193)
|..+.-+ +++-..++.+.|+|+|.||+||||++|.|-..+.+...|-.+.+. .++.+ ...+-++|+||.
T Consensus 292 I~llRQf-~kLh~dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGETKVWQYItL-mkrIfLIDcPGv 362 (572)
T KOG2423|consen 292 IQLLRQF-AKLHSDKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGETKVWQYITL-MKRIFLIDCPGV 362 (572)
T ss_pred HHHHHHH-HhhccCccceeeeeecCCCCchHHHHHHHhhcccccccCCCCcchHHHHHHH-HhceeEecCCCc
Confidence 3344333 345567799999999999999999999998888766555333321 12222 245678999993
No 423
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.77 E-value=0.00078 Score=45.63 Aligned_cols=67 Identities=22% Similarity=0.333 Sum_probs=38.7
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCe-EEEEEE-cC-ChhhhHHhHHhhhccCCEEEE
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKI-KFKAFD-LG-GHQMARRVWKDYYAKVDAVVY 93 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~D-~~-g~~~~~~~~~~~~~~~d~ii~ 93 (193)
+.-.++++|++|+|||||++.+.+.... ....+.+++. .+.+.. .. |+.+........+.+++.+++
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~--------~~G~i~~~~~~~i~~~~~lS~G~~~rv~laral~~~p~illl 94 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGELEP--------DEGIVTWGSTVKIGYFEQLSGGEKMRLALAKLLLENPNLLLL 94 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCCC--------CceEEEECCeEEEEEEccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 3447899999999999999999875421 2233333332 222221 33 344334444555666765544
No 424
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.75 E-value=2.2e-05 Score=57.10 Aligned_cols=25 Identities=28% Similarity=0.405 Sum_probs=21.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCcc
Q 029453 22 KILFLGLDNSGKTTLLHMLKDERLV 46 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~~~~ 46 (193)
-|+++|++|||||||+|.+.+-...
T Consensus 31 fvsilGpSGcGKSTLLriiAGL~~p 55 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGLEKP 55 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4899999999999999999765543
No 425
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.75 E-value=6.4e-05 Score=56.34 Aligned_cols=72 Identities=21% Similarity=0.291 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHhCC-CCcccEEEEEcCCCCCHHHHHHHHhcCCc-----cccCCCCC---cceeEEEeCC-eEEEEEEcC
Q 029453 3 LVDWFYGILVSLGL-WQKEAKILFLGLDNSGKTTLLHMLKDERL-----VQHQPTQY---PTSEELSIGK-IKFKAFDLG 72 (193)
Q Consensus 3 ~~~~~~~~~~~~~~-~~~~~~i~i~G~~~~GKssl~~~l~~~~~-----~~~~~t~~---~~~~~~~~~~-~~~~~~D~~ 72 (193)
+..|+..-+.+... .+.++.+.|+|.||+|||||+|.+..... .......+ ...+.+.+.+ ..+-++|||
T Consensus 125 il~~~~~~l~r~irt~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp~vy~iDTP 204 (335)
T KOG2485|consen 125 ILTILSEELVRFIRTLNSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRPPVYLIDTP 204 (335)
T ss_pred HHHHHHHHHHHhhcccCCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCCceEEecCC
Confidence 45666665555555 66899999999999999999998743221 12221111 1222344443 357788999
Q ss_pred Ch
Q 029453 73 GH 74 (193)
Q Consensus 73 g~ 74 (193)
|.
T Consensus 205 Gi 206 (335)
T KOG2485|consen 205 GI 206 (335)
T ss_pred Cc
Confidence 93
No 426
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.75 E-value=0.00017 Score=56.21 Aligned_cols=23 Identities=35% Similarity=0.387 Sum_probs=20.2
Q ss_pred cccEEEEEcCCCCCHHHHHHHHh
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLK 41 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~ 41 (193)
+.-.++++|+.||||||++..+.
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA 227 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLG 227 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 45678999999999999999885
No 427
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.75 E-value=2.9e-05 Score=50.84 Aligned_cols=21 Identities=38% Similarity=0.504 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 029453 22 KILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~ 42 (193)
.|+|.|++||||||+++.+..
T Consensus 1 vI~I~G~~gsGKST~a~~La~ 21 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAE 21 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999975
No 428
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.72 E-value=0.00037 Score=53.00 Aligned_cols=127 Identities=18% Similarity=0.158 Sum_probs=68.7
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccc-------cCCCC------------------------CcceeEEE-----
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQ-------HQPTQ------------------------YPTSEELS----- 60 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-------~~~t~------------------------~~~~~~~~----- 60 (193)
..+.+-++++|-.|+||||-+-.+....... -..|. +.....+-
T Consensus 136 ~~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~ 215 (340)
T COG0552 136 EKKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQ 215 (340)
T ss_pred CCCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHH
Confidence 4568899999999999999998874211100 00010 11111111
Q ss_pred ---eCCeEEEEEEcCChhhh-------HHhHHhhhcc-----CCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEE
Q 029453 61 ---IGKIKFKAFDLGGHQMA-------RRVWKDYYAK-----VDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFL 125 (193)
Q Consensus 61 ---~~~~~~~~~D~~g~~~~-------~~~~~~~~~~-----~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pvi 125 (193)
-.+.++.++||.|.-.- ..-..+.++. ++=+++++|++-++.--...+.+.+... ---
T Consensus 216 ~Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~F~eav~-------l~G 288 (340)
T COG0552 216 AAKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKIFNEAVG-------LDG 288 (340)
T ss_pred HHHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHHHHHHhcC-------Cce
Confidence 13688999999993211 1111122233 3348888899876332233333444422 125
Q ss_pred EEeeCCCCC-CCCCHHHHHHhhCCCc
Q 029453 126 ILGNKIDIP-YAASEDELRYHMGLTN 150 (193)
Q Consensus 126 iv~nK~Dl~-~~~~~~~~~~~~~~~~ 150 (193)
+++||.|-. +....-.+...++.+-
T Consensus 289 iIlTKlDgtAKGG~il~I~~~l~~PI 314 (340)
T COG0552 289 IILTKLDGTAKGGIILSIAYELGIPI 314 (340)
T ss_pred EEEEecccCCCcceeeeHHHHhCCCE
Confidence 778999965 3444434555555444
No 429
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.72 E-value=0.00052 Score=47.51 Aligned_cols=26 Identities=27% Similarity=0.432 Sum_probs=22.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
+.-.++++|++|+|||||++.+.+-.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44578999999999999999998754
No 430
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.70 E-value=0.0003 Score=52.08 Aligned_cols=111 Identities=16% Similarity=0.220 Sum_probs=65.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCccccCC-----CCCcceeEEEe--CC--eEEEEEEcCChhh-------------
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERLVQHQP-----TQYPTSEELSI--GK--IKFKAFDLGGHQM------------- 76 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~-----t~~~~~~~~~~--~~--~~~~~~D~~g~~~------------- 76 (193)
-.++|.-+|..|.|||||++.+++..+..... +......+... ++ ..+.++||.|...
T Consensus 41 F~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iVd 120 (406)
T KOG3859|consen 41 FCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIVD 120 (406)
T ss_pred ceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchHHH
Confidence 45899999999999999999999888764332 22222222222 23 4688999998221
Q ss_pred -hHHhHHhhh---------------ccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC
Q 029453 77 -ARRVWKDYY---------------AKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIP 134 (193)
Q Consensus 77 -~~~~~~~~~---------------~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~ 134 (193)
....+..|+ .+.++.+|.+..+. -++..+.-....-+. ...-+|-++-|.|-.
T Consensus 121 yidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTG-H~LKslDLvtmk~Ld----skVNIIPvIAKaDti 189 (406)
T KOG3859|consen 121 YIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTG-HSLKSLDLVTMKKLD----SKVNIIPVIAKADTI 189 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCC-cchhHHHHHHHHHHh----hhhhhHHHHHHhhhh
Confidence 112222222 24678888887753 224444332222222 245567777888853
No 431
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.70 E-value=0.00036 Score=55.63 Aligned_cols=81 Identities=11% Similarity=0.048 Sum_probs=44.5
Q ss_pred CeEEEEEEcCChhhh----HHhHHhh--hccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC-C
Q 029453 63 KIKFKAFDLGGHQMA----RRVWKDY--YAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIP-Y 135 (193)
Q Consensus 63 ~~~~~~~D~~g~~~~----~~~~~~~--~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~-~ 135 (193)
+.++.++||||.... -.....+ .-.++.+++|+|+... +........+.... ...-+++||.|.. +
T Consensus 182 ~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg---q~~~~~a~~f~~~v----~i~giIlTKlD~~~~ 254 (428)
T TIGR00959 182 GFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG---QDAVNTAKTFNERL----GLTGVVLTKLDGDAR 254 (428)
T ss_pred CCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch---HHHHHHHHHHHhhC----CCCEEEEeCccCccc
Confidence 467899999994322 1111111 2247888999998754 33344444442221 1246779999965 3
Q ss_pred CCCHHHHHHhhCCCc
Q 029453 136 AASEDELRYHMGLTN 150 (193)
Q Consensus 136 ~~~~~~~~~~~~~~~ 150 (193)
......+....+.+.
T Consensus 255 ~G~~lsi~~~~~~PI 269 (428)
T TIGR00959 255 GGAALSVRSVTGKPI 269 (428)
T ss_pred ccHHHHHHHHHCcCE
Confidence 333444555554443
No 432
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.66 E-value=0.00043 Score=42.99 Aligned_cols=97 Identities=15% Similarity=0.035 Sum_probs=55.1
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCeEEEEEEcCChhhhHHh-HHhhhccCCEEEEEEeCCChh
Q 029453 23 ILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMARRV-WKDYYAKVDAVVYLIDAYDKE 101 (193)
Q Consensus 23 i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~-~~~~~~~~d~ii~v~d~~~~~ 101 (193)
+++.|..|+||||+...+...-.. .+.....+. ++.++|+++....... .......+|.++++++.....
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~-----~g~~v~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~~~~~ 72 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAK-----RGKRVLLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTPEALA 72 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-----CCCeEEEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecCCchhh
Confidence 678899999999999887543211 111111111 7889999986433221 133456789999999886543
Q ss_pred hHHHHHHHHHHHHhCCCCCCCcEEEEee
Q 029453 102 RFSESKRELDALLSDEALADVPFLILGN 129 (193)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~pviiv~n 129 (193)
....................+..+++|
T Consensus 73 -~~~~~~~~~~~~~~~~~~~~~~~vv~N 99 (99)
T cd01983 73 -VLGARRLTEVVLELAIEGLRPVGVVVN 99 (99)
T ss_pred -HHHHHHHHHHHHHhhccCCceEEEEeC
Confidence 333333322222222224455555554
No 433
>PRK04195 replication factor C large subunit; Provisional
Probab=97.66 E-value=0.00073 Score=54.99 Aligned_cols=37 Identities=24% Similarity=0.299 Sum_probs=26.2
Q ss_pred HHHHHHHhCCCCcccEEEEEcCCCCCHHHHHHHHhcC
Q 029453 7 FYGILVSLGLWQKEAKILFLGLDNSGKTTLLHMLKDE 43 (193)
Q Consensus 7 ~~~~~~~~~~~~~~~~i~i~G~~~~GKssl~~~l~~~ 43 (193)
+..|...+........+.+.|++|+||||+++.+...
T Consensus 26 l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~e 62 (482)
T PRK04195 26 LREWIESWLKGKPKKALLLYGPPGVGKTSLAHALAND 62 (482)
T ss_pred HHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3334333333333567999999999999999999764
No 434
>PRK08118 topology modulation protein; Reviewed
Probab=97.65 E-value=4.5e-05 Score=53.05 Aligned_cols=23 Identities=39% Similarity=0.647 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDE 43 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~ 43 (193)
.||.|+|++|||||||.+.+...
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999998754
No 435
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.63 E-value=0.00017 Score=53.93 Aligned_cols=110 Identities=15% Similarity=0.051 Sum_probs=61.7
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCc-----c---ccCC----------C----CCcceeE-E-------------EeC
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERL-----V---QHQP----------T----QYPTSEE-L-------------SIG 62 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~-----~---~~~~----------t----~~~~~~~-~-------------~~~ 62 (193)
+.-+++++|++|+||||++..+...-. . ...+ + .+..... . ...
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~ 153 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 153 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcC
Confidence 446999999999999999988753211 0 0000 0 0000000 0 012
Q ss_pred CeEEEEEEcCChhhh----HHhHHhhh--ccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC
Q 029453 63 KIKFKAFDLGGHQMA----RRVWKDYY--AKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY 135 (193)
Q Consensus 63 ~~~~~~~D~~g~~~~----~~~~~~~~--~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~ 135 (193)
+.++.++||+|.... -..+...+ ...+-+++|+|++.. .+.+......+. . -.+--+++||.|...
T Consensus 154 ~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~--~~d~~~~~~~f~-~----~~~~~~I~TKlDet~ 225 (270)
T PRK06731 154 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK--SKDMIEIITNFK-D----IHIDGIVFTKFDETA 225 (270)
T ss_pred CCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccC--HHHHHHHHHHhC-C----CCCCEEEEEeecCCC
Confidence 468899999995421 11122222 245678999998743 134444444442 1 233467899999863
No 436
>PRK07261 topology modulation protein; Provisional
Probab=97.63 E-value=5e-05 Score=53.07 Aligned_cols=22 Identities=41% Similarity=0.617 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 029453 22 KILFLGLDNSGKTTLLHMLKDE 43 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~ 43 (193)
+|+|+|++|||||||++.+...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 7999999999999999998643
No 437
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.63 E-value=4.6e-05 Score=55.14 Aligned_cols=26 Identities=31% Similarity=0.406 Sum_probs=21.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCc
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDERL 45 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~~~ 45 (193)
.=-++|+||+|||||||+|.+.+-..
T Consensus 31 Ge~vaI~GpSGSGKSTLLniig~ld~ 56 (226)
T COG1136 31 GEFVAIVGPSGSGKSTLLNLLGGLDK 56 (226)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcccC
Confidence 33689999999999999999876553
No 438
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.62 E-value=0.001 Score=52.36 Aligned_cols=109 Identities=14% Similarity=0.077 Sum_probs=60.7
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC---------ccc--cCCCC---------------CcceeEE-----------Ee
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDER---------LVQ--HQPTQ---------------YPTSEEL-----------SI 61 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~---------~~~--~~~t~---------------~~~~~~~-----------~~ 61 (193)
....++++|++|+||||.+..+.... ... ...+. +...... ..
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 34589999999999999998875311 000 00010 0010000 11
Q ss_pred CCeEEEEEEcCChhhhH----HhHHhhhcc---CCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC
Q 029453 62 GKIKFKAFDLGGHQMAR----RVWKDYYAK---VDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIP 134 (193)
Q Consensus 62 ~~~~~~~~D~~g~~~~~----~~~~~~~~~---~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~ 134 (193)
.+..+.++||+|..... ......+.. ..-.++|+|++.. ...+...+..+.. -.+--+++||.|..
T Consensus 253 ~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~--~~~~~~~~~~~~~-----~~~~~~I~TKlDet 325 (388)
T PRK12723 253 KDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK--TSDVKEIFHQFSP-----FSYKTVIFTKLDET 325 (388)
T ss_pred CCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC--HHHHHHHHHHhcC-----CCCCEEEEEeccCC
Confidence 35789999999943221 112222332 2357899999865 2344444444421 12446789999986
No 439
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.62 E-value=5.3e-05 Score=53.20 Aligned_cols=23 Identities=39% Similarity=0.598 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDE 43 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~ 43 (193)
.||.|+|+|||||||++..+...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999999865
No 440
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.59 E-value=8.1e-05 Score=53.16 Aligned_cols=28 Identities=32% Similarity=0.432 Sum_probs=23.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCcc
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERLV 46 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~~ 46 (193)
+.=.++++||+|||||||++.+.+-+..
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN~LE~~ 54 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLNGLEEP 54 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCcCC
Confidence 4447899999999999999999876543
No 441
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.59 E-value=0.00017 Score=56.96 Aligned_cols=108 Identities=18% Similarity=0.145 Sum_probs=59.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC-c-----cc--cCCC---------------CCcceeEE----------EeCCeEE
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDER-L-----VQ--HQPT---------------QYPTSEEL----------SIGKIKF 66 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~~-~-----~~--~~~t---------------~~~~~~~~----------~~~~~~~ 66 (193)
...++++|++||||||++.++.... . .. ...+ .+...... .-.+.++
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~ 302 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSEL 302 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCE
Confidence 4569999999999999999986321 0 00 0000 00001000 0135688
Q ss_pred EEEEcCChhhh----HHhHHhhhc-----cCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC
Q 029453 67 KAFDLGGHQMA----RRVWKDYYA-----KVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIP 134 (193)
Q Consensus 67 ~~~D~~g~~~~----~~~~~~~~~-----~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~ 134 (193)
.++||+|.... ...+...++ ...-.++|+|++... ..+......+ .. --+--+++||.|..
T Consensus 303 VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~--~~~~~~~~~f-~~----~~~~glIlTKLDEt 372 (432)
T PRK12724 303 ILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSY--HHTLTVLKAY-ES----LNYRRILLTKLDEA 372 (432)
T ss_pred EEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCH--HHHHHHHHHh-cC----CCCCEEEEEcccCC
Confidence 99999995421 112222222 234678899997652 3333333333 22 12346789999986
No 442
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=97.57 E-value=0.0001 Score=56.56 Aligned_cols=24 Identities=33% Similarity=0.513 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCc
Q 029453 22 KILFLGLDNSGKTTLLHMLKDERL 45 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~~~ 45 (193)
-++++||+||||||+++.+.+-..
T Consensus 31 f~vllGPSGcGKSTlLr~IAGLe~ 54 (338)
T COG3839 31 FVVLLGPSGCGKSTLLRMIAGLEE 54 (338)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 378999999999999999987654
No 443
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=97.56 E-value=0.00031 Score=48.95 Aligned_cols=53 Identities=17% Similarity=0.100 Sum_probs=33.9
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCeEEEEEEcCChhhh
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMA 77 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~ 77 (193)
+..-++|+|++|||||||++++...-. ..+.....+.+.+..+.+ |.+|-+.+
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~-----~~g~~vg~Ik~~~~~~~~-d~~g~Ds~ 57 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALC-----ARGIRPGLIKHTHHDMDV-DKPGKDSY 57 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHh-----hcCCeEEEEEEcCCCccc-CCCCcHHH
Confidence 455789999999999999999875421 112233555554444433 77775433
No 444
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.56 E-value=0.0012 Score=43.46 Aligned_cols=21 Identities=43% Similarity=0.523 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 029453 23 ILFLGLDNSGKTTLLHMLKDE 43 (193)
Q Consensus 23 i~i~G~~~~GKssl~~~l~~~ 43 (193)
|++.|++|+|||++++.+...
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 689999999999999998864
No 445
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.56 E-value=0.0006 Score=54.99 Aligned_cols=23 Identities=39% Similarity=0.660 Sum_probs=20.9
Q ss_pred cccEEEEEcCCCCCHHHHHHHHh
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLK 41 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~ 41 (193)
+.-||+|+|.+||||||+++.++
T Consensus 377 kGekVaIvG~nGsGKSTilr~Ll 399 (591)
T KOG0057|consen 377 KGEKVAIVGSNGSGKSTILRLLL 399 (591)
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 45699999999999999999985
No 446
>KOG2484 consensus GTPase [General function prediction only]
Probab=97.54 E-value=0.00017 Score=55.82 Aligned_cols=71 Identities=15% Similarity=0.155 Sum_probs=49.0
Q ss_pred hHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCc
Q 029453 77 ARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTN 150 (193)
Q Consensus 77 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~ 150 (193)
|...+...++.+|++|.|+|+.||.+-.... .-..++.. ..++..|+|+||+|+.+.+..++|..++....
T Consensus 136 Y~ke~rkvve~sDVVleVlDARDPlgtR~~~-vE~~V~~~--~gnKkLILVLNK~DLVPrEv~e~Wl~YLr~~~ 206 (435)
T KOG2484|consen 136 YDKEFRKVVEASDVVLEVLDARDPLGTRCPE-VEEAVLQA--HGNKKLILVLNKIDLVPREVVEKWLVYLRREG 206 (435)
T ss_pred HHHHHHHHHhhhheEEEeeeccCCCCCCChh-HHHHHHhc--cCCceEEEEeehhccCCHHHHHHHHHHHHhhC
Confidence 4444555667899999999999984432221 11222212 24589999999999999888888888877555
No 447
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=97.52 E-value=0.00014 Score=52.77 Aligned_cols=24 Identities=25% Similarity=0.512 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
=+++++|.+|||||||++.+.+-.
T Consensus 54 e~vGiiG~NGaGKSTLlkliaGi~ 77 (249)
T COG1134 54 ERVGIIGHNGAGKSTLLKLIAGIY 77 (249)
T ss_pred CEEEEECCCCCcHHHHHHHHhCcc
Confidence 389999999999999999998743
No 448
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.52 E-value=9.2e-05 Score=49.54 Aligned_cols=26 Identities=31% Similarity=0.395 Sum_probs=22.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
+.=.++|+|++|||||||++.+.+..
T Consensus 10 ~g~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 10 PGEIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEccCCCccccceeeecccc
Confidence 34478999999999999999998755
No 449
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.52 E-value=0.0017 Score=49.02 Aligned_cols=114 Identities=15% Similarity=0.213 Sum_probs=67.1
Q ss_pred HHHHHHHHHhCCCCcccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCeEEEEEEcCChh---hh----
Q 029453 5 DWFYGILVSLGLWQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQ---MA---- 77 (193)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~---~~---- 77 (193)
+-+..++. .+...+...++++|++|-|||+++++|.........+. ...+++..+.+|... .+
T Consensus 47 ~~L~~Ll~-~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~---------~~~~PVv~vq~P~~p~~~~~Y~~I 116 (302)
T PF05621_consen 47 DRLEELLE-YPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDED---------AERIPVVYVQMPPEPDERRFYSAI 116 (302)
T ss_pred HHHHHHHh-CCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCC---------CccccEEEEecCCCCChHHHHHHH
Confidence 33444443 46677889999999999999999999987553322111 112355566665311 11
Q ss_pred -----------------HHhHHhhhccCCEEEEEEeCCCh---hhH---HHHHHHHHHHHhCCCCCCCcEEEEeeCC
Q 029453 78 -----------------RRVWKDYYAKVDAVVYLIDAYDK---ERF---SESKRELDALLSDEALADVPFLILGNKI 131 (193)
Q Consensus 78 -----------------~~~~~~~~~~~d~ii~v~d~~~~---~~~---~~~~~~~~~~~~~~~~~~~pviiv~nK~ 131 (193)
.......++...+=++++|--+- .+. ..+...+..+. +.-++|++.++++-
T Consensus 117 L~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~---NeL~ipiV~vGt~~ 190 (302)
T PF05621_consen 117 LEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLG---NELQIPIVGVGTRE 190 (302)
T ss_pred HHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHh---hccCCCeEEeccHH
Confidence 12222445667788888886431 111 22334444443 33689999998753
No 450
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.51 E-value=0.00019 Score=55.57 Aligned_cols=38 Identities=26% Similarity=0.465 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHhCCCCcccEEEEEcCCCCCHHHHHHHHhc
Q 029453 3 LVDWFYGILVSLGLWQKEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
++.|++.++.. ...++.-++++||||+|||||++.+..
T Consensus 63 lv~~l~~~a~g--~~~~r~il~L~GPPGsGKStla~~La~ 100 (361)
T smart00763 63 FVNYFKSAAQG--LEERKQILYLLGPVGGGKSSLVECLKR 100 (361)
T ss_pred HHHHHHHHHhc--CCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 56777776632 234555689999999999999999864
No 451
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.50 E-value=0.00018 Score=50.78 Aligned_cols=22 Identities=36% Similarity=0.570 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 029453 22 KILFLGLDNSGKTTLLHMLKDE 43 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~ 43 (193)
-++++|++|||||||+|.+.+-
T Consensus 33 ~vv~lGpSGcGKTTLLnl~AGf 54 (259)
T COG4525 33 LVVVLGPSGCGKTTLLNLIAGF 54 (259)
T ss_pred EEEEEcCCCccHHHHHHHHhcC
Confidence 5789999999999999998753
No 452
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.49 E-value=0.00012 Score=41.75 Aligned_cols=20 Identities=40% Similarity=0.605 Sum_probs=18.2
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 029453 22 KILFLGLDNSGKTTLLHMLK 41 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~ 41 (193)
..+|.|+.||||||+++.+.
T Consensus 25 ~tli~G~nGsGKSTllDAi~ 44 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQ 44 (62)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999874
No 453
>PF05729 NACHT: NACHT domain
Probab=97.49 E-value=0.0009 Score=45.97 Aligned_cols=20 Identities=40% Similarity=0.537 Sum_probs=18.1
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 029453 23 ILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 23 i~i~G~~~~GKssl~~~l~~ 42 (193)
+.|.|++|+|||+++..+..
T Consensus 3 l~I~G~~G~GKStll~~~~~ 22 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLAQ 22 (166)
T ss_pred EEEECCCCCChHHHHHHHHH
Confidence 68999999999999998864
No 454
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=97.48 E-value=9.9e-05 Score=51.43 Aligned_cols=26 Identities=27% Similarity=0.446 Sum_probs=21.7
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
..=.++|+|++|+|||||+|.+.+=.
T Consensus 24 ~ge~vAi~GpSGaGKSTLLnLIAGF~ 49 (231)
T COG3840 24 AGEIVAILGPSGAGKSTLLNLIAGFE 49 (231)
T ss_pred CCcEEEEECCCCccHHHHHHHHHhcc
Confidence 33479999999999999999987544
No 455
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.48 E-value=0.00012 Score=43.08 Aligned_cols=21 Identities=33% Similarity=0.468 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 029453 23 ILFLGLDNSGKTTLLHMLKDE 43 (193)
Q Consensus 23 i~i~G~~~~GKssl~~~l~~~ 43 (193)
|++.|++||||||+.+.+...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998754
No 456
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.48 E-value=0.00016 Score=52.26 Aligned_cols=21 Identities=33% Similarity=0.580 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 029453 22 KILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~ 42 (193)
-|+++|++|||||||++.+.+
T Consensus 32 ~VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 32 MVAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 589999999999999999987
No 457
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.46 E-value=0.0011 Score=44.53 Aligned_cols=102 Identities=14% Similarity=0.130 Sum_probs=58.8
Q ss_pred EEEcCCCCCHHHHHHHHhcCCccccCC----CCCcceeEEEeCCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCC
Q 029453 24 LFLGLDNSGKTTLLHMLKDERLVQHQP----TQYPTSEELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYD 99 (193)
Q Consensus 24 ~i~G~~~~GKssl~~~l~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~ 99 (193)
..-|.+|+|||++.-.+...-...... ..+++...+ ..++.++|+|+.... .....+..+|.++++++.+.
T Consensus 4 ~~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~~~~~~---~yd~VIiD~p~~~~~--~~~~~l~~aD~vviv~~~~~ 78 (139)
T cd02038 4 VTSGKGGVGKTNISANLALALAKLGKRVLLLDADLGLANL---DYDYIIIDTGAGISD--NVLDFFLAADEVIVVTTPEP 78 (139)
T ss_pred EEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCCCCCCC---CCCEEEEECCCCCCH--HHHHHHHhCCeEEEEcCCCh
Confidence 345788999999987764221100000 001111111 178899999875322 22356778999999999864
Q ss_pred hhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCC
Q 029453 100 KERFSESKRELDALLSDEALADVPFLILGNKIDI 133 (193)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl 133 (193)
. ++......+..+.... ...++.+++|+++.
T Consensus 79 ~-s~~~~~~~l~~l~~~~--~~~~~~lVvN~~~~ 109 (139)
T cd02038 79 T-SITDAYALIKKLAKQL--RVLNFRVVVNRAES 109 (139)
T ss_pred h-HHHHHHHHHHHHHHhc--CCCCEEEEEeCCCC
Confidence 3 3444444444443221 35678899999974
No 458
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.46 E-value=0.00019 Score=55.38 Aligned_cols=24 Identities=38% Similarity=0.486 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCc
Q 029453 22 KILFLGLDNSGKTTLLHMLKDERL 45 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~~~ 45 (193)
=++++||+||||||+++.+.+=+.
T Consensus 33 f~~lLGPSGcGKTTlLR~IAGfe~ 56 (352)
T COG3842 33 FVTLLGPSGCGKTTLLRMIAGFEQ 56 (352)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 478999999999999999976554
No 459
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.45 E-value=0.00011 Score=49.40 Aligned_cols=20 Identities=40% Similarity=0.552 Sum_probs=18.3
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 029453 23 ILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 23 i~i~G~~~~GKssl~~~l~~ 42 (193)
|.++|+|||||||+++.+..
T Consensus 2 ii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999999999873
No 460
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.45 E-value=0.0023 Score=42.62 Aligned_cols=26 Identities=31% Similarity=0.477 Sum_probs=22.1
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
....+.+.|++|+|||++++.+...-
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 44579999999999999999987643
No 461
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.45 E-value=0.0038 Score=42.83 Aligned_cols=26 Identities=27% Similarity=0.395 Sum_probs=22.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
+.-.++|+|++|+|||||++.+.+..
T Consensus 24 ~g~~~~i~G~nGsGKStll~~l~g~~ 49 (157)
T cd00267 24 AGEIVALVGPNGSGKSTLLRAIAGLL 49 (157)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34578999999999999999998754
No 462
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.44 E-value=0.00011 Score=52.55 Aligned_cols=23 Identities=35% Similarity=0.531 Sum_probs=19.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHHh
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLK 41 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~ 41 (193)
++--.+++||+|||||||++.+.
T Consensus 32 ~~~VTAlIGPSGcGKST~LR~lN 54 (253)
T COG1117 32 KNKVTALIGPSGCGKSTLLRCLN 54 (253)
T ss_pred CCceEEEECCCCcCHHHHHHHHH
Confidence 44567999999999999999875
No 463
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=97.44 E-value=0.00061 Score=50.55 Aligned_cols=20 Identities=35% Similarity=0.554 Sum_probs=18.0
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 029453 23 ILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 23 i~i~G~~~~GKssl~~~l~~ 42 (193)
|.++|.|||||||+++.+..
T Consensus 2 Ivl~G~pGSGKST~a~~La~ 21 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAK 21 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 68999999999999998863
No 464
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=97.42 E-value=0.0015 Score=54.45 Aligned_cols=26 Identities=31% Similarity=0.416 Sum_probs=22.9
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
+.-+++++|++|||||||++.+.+-.
T Consensus 375 ~G~~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 375 AGQRIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 55689999999999999999998754
No 465
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.41 E-value=0.0009 Score=52.64 Aligned_cols=110 Identities=17% Similarity=0.188 Sum_probs=60.6
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcC------Ccc-----ccCC----------------CCCcc--eeE----------
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDE------RLV-----QHQP----------------TQYPT--SEE---------- 58 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~------~~~-----~~~~----------------t~~~~--~~~---------- 58 (193)
+++..|.++|-.||||||.+-.+... +.. .+.| .+... ...
T Consensus 98 ~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~ 177 (451)
T COG0541 98 KPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEK 177 (451)
T ss_pred CCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHHH
Confidence 35678999999999999998876411 000 0000 00000 000
Q ss_pred EEeCCeEEEEEEcCChhhhHH-hHHh-----hhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCC
Q 029453 59 LSIGKIKFKAFDLGGHQMARR-VWKD-----YYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKID 132 (193)
Q Consensus 59 ~~~~~~~~~~~D~~g~~~~~~-~~~~-----~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D 132 (193)
......++.++||.|...... +... ..-++|=+++|+|+.-++.-......+.+-+. --=+++||.|
T Consensus 178 ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~e~l~-------itGvIlTKlD 250 (451)
T COG0541 178 AKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFNEALG-------ITGVILTKLD 250 (451)
T ss_pred HHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHHHhhhcC-------CceEEEEccc
Confidence 011246899999999433222 1111 12368999999999876433333332222211 1246789999
Q ss_pred CC
Q 029453 133 IP 134 (193)
Q Consensus 133 l~ 134 (193)
-.
T Consensus 251 Gd 252 (451)
T COG0541 251 GD 252 (451)
T ss_pred CC
Confidence 75
No 466
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.41 E-value=0.00022 Score=47.90 Aligned_cols=21 Identities=43% Similarity=0.616 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 029453 23 ILFLGLDNSGKTTLLHMLKDE 43 (193)
Q Consensus 23 i~i~G~~~~GKssl~~~l~~~ 43 (193)
|+++|++||||||+++.+...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999865
No 467
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=97.41 E-value=0.001 Score=53.31 Aligned_cols=125 Identities=15% Similarity=0.136 Sum_probs=75.2
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCc------------ccc---CCCCCccee--EEE------------------e
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERL------------VQH---QPTQYPTSE--ELS------------------I 61 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~------------~~~---~~t~~~~~~--~~~------------------~ 61 (193)
..+-=+..++....-|||||-..+....- ..+ +..++.+.. .++ .
T Consensus 16 ~~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~ 95 (842)
T KOG0469|consen 16 KKNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDG 95 (842)
T ss_pred ccccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCC
Confidence 33344677888999999999999853221 100 001111111 111 1
Q ss_pred CCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC---CCCC
Q 029453 62 GKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIP---YAAS 138 (193)
Q Consensus 62 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~---~~~~ 138 (193)
+++-+.++|.|||-.|.+...+.++-.|+.+.|+|..++--.+.-. .+...+.. .+.-+++.||+|.. -...
T Consensus 96 ~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTET-VLrQA~~E----RIkPvlv~NK~DRAlLELq~~ 170 (842)
T KOG0469|consen 96 NGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTET-VLRQAIAE----RIKPVLVMNKMDRALLELQLS 170 (842)
T ss_pred cceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHH-HHHHHHHh----hccceEEeehhhHHHHhhcCC
Confidence 2577899999999999998888899999999999987652222222 22222222 33346679999954 3445
Q ss_pred HHHHHHhh
Q 029453 139 EDELRYHM 146 (193)
Q Consensus 139 ~~~~~~~~ 146 (193)
.+++.+.+
T Consensus 171 ~EeLyqtf 178 (842)
T KOG0469|consen 171 QEELYQTF 178 (842)
T ss_pred HHHHHHHH
Confidence 55544443
No 468
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.40 E-value=0.00013 Score=53.91 Aligned_cols=24 Identities=38% Similarity=0.398 Sum_probs=20.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDE 43 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~ 43 (193)
.--++++||.|||||||++.+.+-
T Consensus 28 G~i~~iiGpNG~GKSTLLk~l~g~ 51 (258)
T COG1120 28 GEITGILGPNGSGKSTLLKCLAGL 51 (258)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcc
Confidence 446899999999999999999753
No 469
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.40 E-value=0.0025 Score=40.42 Aligned_cols=81 Identities=14% Similarity=0.053 Sum_probs=47.1
Q ss_pred EEEEc-CCCCCHHHHHHHHhcCCccccCCCCCcceeEEEe-CCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCCh
Q 029453 23 ILFLG-LDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSI-GKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDK 100 (193)
Q Consensus 23 i~i~G-~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~ 100 (193)
|++.| ..|+||||+...+...-.... .....+.. ...++.++|+|+..... ....+..+|.++++++.+..
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~~~-----~~vl~~d~d~~~d~viiD~p~~~~~~--~~~~l~~ad~viv~~~~~~~ 74 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALARRG-----KRVLLIDLDPQYDYIIIDTPPSLGLL--TRNALAAADLVLIPVQPSPL 74 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHhCC-----CcEEEEeCCCCCCEEEEeCcCCCCHH--HHHHHHHCCEEEEeccCCHH
Confidence 56666 669999999877643221110 11111111 11678899999864322 23566779999999988643
Q ss_pred hhHHHHHHHHH
Q 029453 101 ERFSESKRELD 111 (193)
Q Consensus 101 ~~~~~~~~~~~ 111 (193)
++......+.
T Consensus 75 -s~~~~~~~~~ 84 (104)
T cd02042 75 -DLDGLEKLLE 84 (104)
T ss_pred -HHHHHHHHHH
Confidence 3444444443
No 470
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.40 E-value=0.00017 Score=51.50 Aligned_cols=24 Identities=38% Similarity=0.530 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCc
Q 029453 22 KILFLGLDNSGKTTLLHMLKDERL 45 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~~~ 45 (193)
-++|+||.|+|||||++.+++.-.
T Consensus 29 v~ailGPNGAGKSTlLk~LsGel~ 52 (259)
T COG4559 29 VLAILGPNGAGKSTLLKALSGELS 52 (259)
T ss_pred EEEEECCCCccHHHHHHHhhCccC
Confidence 578999999999999999987654
No 471
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.39 E-value=0.00037 Score=51.19 Aligned_cols=26 Identities=27% Similarity=0.437 Sum_probs=22.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
+.=.++++|++|||||||++.+.+-.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 25 RGEILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34478999999999999999998754
No 472
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=97.39 E-value=0.00035 Score=50.59 Aligned_cols=26 Identities=23% Similarity=0.492 Sum_probs=22.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
+.-.++++|++|||||||++.+.+-.
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 28 KGEMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34478999999999999999998754
No 473
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.39 E-value=0.0002 Score=49.36 Aligned_cols=25 Identities=28% Similarity=0.365 Sum_probs=21.0
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcC
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDE 43 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~ 43 (193)
+.=.++++||+|||||||++.+..-
T Consensus 28 ~Ge~iaitGPSG~GKStllk~va~L 52 (223)
T COG4619 28 AGEFIAITGPSGCGKSTLLKIVASL 52 (223)
T ss_pred CCceEEEeCCCCccHHHHHHHHHhc
Confidence 3347899999999999999998753
No 474
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.39 E-value=0.00011 Score=50.86 Aligned_cols=22 Identities=36% Similarity=0.563 Sum_probs=17.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 029453 22 KILFLGLDNSGKTTLLHMLKDE 43 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~ 43 (193)
||+|+|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7999999999999999999754
No 475
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=97.37 E-value=0.00031 Score=49.28 Aligned_cols=23 Identities=30% Similarity=0.579 Sum_probs=20.1
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCc
Q 029453 23 ILFLGLDNSGKTTLLHMLKDERL 45 (193)
Q Consensus 23 i~i~G~~~~GKssl~~~l~~~~~ 45 (193)
+.++|++|||||||++.+.+...
T Consensus 31 ~fl~GpSGAGKSTllkLi~~~e~ 53 (223)
T COG2884 31 VFLTGPSGAGKSTLLKLIYGEER 53 (223)
T ss_pred EEEECCCCCCHHHHHHHHHhhhc
Confidence 67899999999999999987553
No 476
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.36 E-value=0.00021 Score=51.58 Aligned_cols=26 Identities=35% Similarity=0.355 Sum_probs=23.1
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcC
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDE 43 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~ 43 (193)
.+...|+|.|++|||||||++.+...
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 57789999999999999999998653
No 477
>PRK14530 adenylate kinase; Provisional
Probab=97.35 E-value=0.0002 Score=51.87 Aligned_cols=22 Identities=36% Similarity=0.510 Sum_probs=20.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHh
Q 029453 20 EAKILFLGLDNSGKTTLLHMLK 41 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~ 41 (193)
..+|+|+|+|||||||+.+.+.
T Consensus 3 ~~~I~i~G~pGsGKsT~~~~La 24 (215)
T PRK14530 3 QPRILLLGAPGAGKGTQSSNLA 24 (215)
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 4589999999999999999985
No 478
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.35 E-value=0.0002 Score=51.59 Aligned_cols=26 Identities=31% Similarity=0.264 Sum_probs=22.2
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcC
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDE 43 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~ 43 (193)
.+..-|+|+|++|||||||++.+.+.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 45568999999999999999998753
No 479
>PRK06217 hypothetical protein; Validated
Probab=97.34 E-value=0.00019 Score=50.65 Aligned_cols=23 Identities=35% Similarity=0.419 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDE 43 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~ 43 (193)
.+|+|+|.+||||||+.++|...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999998743
No 480
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.34 E-value=0.00019 Score=50.32 Aligned_cols=24 Identities=25% Similarity=0.300 Sum_probs=20.9
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
+.-.++++|++|||||||++.+..
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhh
Confidence 455899999999999999998863
No 481
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.34 E-value=0.00019 Score=45.80 Aligned_cols=22 Identities=32% Similarity=0.330 Sum_probs=19.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHh
Q 029453 20 EAKILFLGLDNSGKTTLLHMLK 41 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~ 41 (193)
.-.++++|++|||||||++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 3468999999999999999976
No 482
>PRK08233 hypothetical protein; Provisional
Probab=97.33 E-value=0.00023 Score=49.99 Aligned_cols=24 Identities=29% Similarity=0.354 Sum_probs=21.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDE 43 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~ 43 (193)
..-|+|.|++||||||+++++...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 467899999999999999998743
No 483
>COG1161 Predicted GTPases [General function prediction only]
Probab=97.33 E-value=0.00048 Score=53.03 Aligned_cols=94 Identities=23% Similarity=0.269 Sum_probs=64.4
Q ss_pred EcCChh-hhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCC
Q 029453 70 DLGGHQ-MARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGL 148 (193)
Q Consensus 70 D~~g~~-~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~ 148 (193)
+.||+. ++.......+..+|+++.|+|+.++. ..-...+..+. .+.|.++|+||+|+.+.....++...+..
T Consensus 16 ~~~g~~~k~~~~~~~~~~~~d~vvevvDar~P~--~s~~~~l~~~v-----~~k~~i~vlNK~DL~~~~~~~~W~~~~~~ 88 (322)
T COG1161 16 WFPGHMKKAKRQLKEVLKSVDVVVEVVDARDPL--GTRNPELERIV-----KEKPKLLVLNKADLAPKEVTKKWKKYFKK 88 (322)
T ss_pred CCCCchHHHHHHHHHhcccCCEEEEEEeccccc--cccCccHHHHH-----ccCCcEEEEehhhcCCHHHHHHHHHHHHh
Confidence 457764 45556677788999999999999874 33344455554 24566999999999876666667666655
Q ss_pred CccccCCCcccCCCCCCccEEEEEEeeecCCChhHHHH
Q 029453 149 TNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFK 186 (193)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~ 186 (193)
.. ....+.++++.+.+...+..
T Consensus 89 ~~----------------~~~~~~v~~~~~~~~~~i~~ 110 (322)
T COG1161 89 EE----------------GIKPIFVSAKSRQGGKKIRK 110 (322)
T ss_pred cC----------------CCccEEEEeecccCccchHH
Confidence 43 12456777777776666653
No 484
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.33 E-value=0.00048 Score=49.77 Aligned_cols=26 Identities=31% Similarity=0.443 Sum_probs=22.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
+.-.++++|++|||||||++.+.+-.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 25 PGEFLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34479999999999999999998754
No 485
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.33 E-value=0.0025 Score=40.80 Aligned_cols=95 Identities=16% Similarity=0.031 Sum_probs=55.0
Q ss_pred EcCCCCCHHHHHHHHhcCCccc-cCC----CCCcceeEEEeCCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCCh
Q 029453 26 LGLDNSGKTTLLHMLKDERLVQ-HQP----TQYPTSEELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDK 100 (193)
Q Consensus 26 ~G~~~~GKssl~~~l~~~~~~~-~~~----t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~ 100 (193)
-+..|+||||+...+...-... ... ..+++. +.++.++|+|+..... ....+..+|.++++++.+..
T Consensus 6 ~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~~------~~D~IIiDtpp~~~~~--~~~~l~~aD~vlvvv~~~~~ 77 (106)
T cd03111 6 GAKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQF------GDDYVVVDLGRSLDEV--SLAALDQADRVFLVTQQDLP 77 (106)
T ss_pred CCCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCCC------CCCEEEEeCCCCcCHH--HHHHHHHcCeEEEEecCChH
Confidence 3567899999887764222111 100 011111 1278999998864332 23456789999999988654
Q ss_pred hhHHHHHHHHHHHHhCCCCC-CCcEEEEeeC
Q 029453 101 ERFSESKRELDALLSDEALA-DVPFLILGNK 130 (193)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~-~~pviiv~nK 130 (193)
++......+..+... ... ..++.+|+|+
T Consensus 78 -s~~~~~~~~~~l~~~-~~~~~~~~~lVvNr 106 (106)
T cd03111 78 -SIRNAKRLLELLRVL-DYSLPAKIELVLNR 106 (106)
T ss_pred -HHHHHHHHHHHHHHc-CCCCcCceEEEecC
Confidence 355555555555432 222 4567777775
No 486
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.32 E-value=0.00018 Score=51.44 Aligned_cols=21 Identities=33% Similarity=0.376 Sum_probs=18.9
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 029453 23 ILFLGLDNSGKTTLLHMLKDE 43 (193)
Q Consensus 23 i~i~G~~~~GKssl~~~l~~~ 43 (193)
|+|.|++|||||||++.+.+.
T Consensus 2 igi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998653
No 487
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.31 E-value=0.00022 Score=50.50 Aligned_cols=23 Identities=35% Similarity=0.575 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 029453 22 KILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
.++|+|++||||||+++.+.+..
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 68999999999999999996643
No 488
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=97.30 E-value=0.00054 Score=50.25 Aligned_cols=26 Identities=35% Similarity=0.529 Sum_probs=22.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
+.-.++++|++|||||||++.+.+-.
T Consensus 34 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 59 (233)
T PRK11629 34 EGEMMAIVGSSGSGKSTLLHLLGGLD 59 (233)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 33478999999999999999998764
No 489
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=97.30 E-value=0.00056 Score=50.11 Aligned_cols=27 Identities=26% Similarity=0.293 Sum_probs=23.6
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHHhc
Q 029453 16 LWQKEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 16 ~~~~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
...+..-++|.|++|||||||++.+.+
T Consensus 29 ~~~~~~iigi~G~~GsGKTTl~~~L~~ 55 (229)
T PRK09270 29 EPQRRTIVGIAGPPGAGKSTLAEFLEA 55 (229)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 346789999999999999999998864
No 490
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=97.30 E-value=0.00023 Score=51.65 Aligned_cols=26 Identities=35% Similarity=0.470 Sum_probs=22.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
+.-.++++|++|||||||++.+.+-.
T Consensus 29 ~G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 29 KGEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 44478999999999999999998754
No 491
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.29 E-value=0.00024 Score=51.29 Aligned_cols=26 Identities=38% Similarity=0.554 Sum_probs=22.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
+.-.++++|++|||||||++.+.+-.
T Consensus 26 ~G~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 26 KGEFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 44478999999999999999998754
No 492
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=97.29 E-value=0.0038 Score=49.88 Aligned_cols=22 Identities=32% Similarity=0.456 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHHHHhcCC
Q 029453 23 ILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 23 i~i~G~~~~GKssl~~~l~~~~ 44 (193)
-+++|..|+|||||++.+++-.
T Consensus 33 HaLLGENGAGKSTLm~iL~G~~ 54 (501)
T COG3845 33 HALLGENGAGKSTLMKILFGLY 54 (501)
T ss_pred EEEeccCCCCHHHHHHHHhCcc
Confidence 3789999999999999998644
No 493
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.28 E-value=0.00024 Score=51.01 Aligned_cols=26 Identities=31% Similarity=0.355 Sum_probs=22.6
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
+.-.++++|++|||||||++.+.+-.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 25 AGEIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44579999999999999999998754
No 494
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.27 E-value=0.00024 Score=51.23 Aligned_cols=25 Identities=32% Similarity=0.420 Sum_probs=22.1
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
+. .++++|++|||||||++.+.+-.
T Consensus 25 ~g-~~~i~G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 25 PG-MYGLLGPNGAGKTTLMRILATLT 49 (211)
T ss_pred CC-cEEEECCCCCCHHHHHHHHhCCC
Confidence 35 89999999999999999998754
No 495
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=97.27 E-value=0.0002 Score=52.07 Aligned_cols=20 Identities=30% Similarity=0.308 Sum_probs=18.3
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 029453 23 ILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 23 i~i~G~~~~GKssl~~~l~~ 42 (193)
|+|.|++|||||||++.+.+
T Consensus 2 igI~G~sGSGKTTla~~L~~ 21 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQA 21 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHH
Confidence 78999999999999999864
No 496
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=97.27 E-value=0.00026 Score=50.21 Aligned_cols=26 Identities=31% Similarity=0.455 Sum_probs=22.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
+.-.++++|++|||||||++.+.+-.
T Consensus 17 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 17 RGEVLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34479999999999999999998754
No 497
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.27 E-value=0.00023 Score=49.98 Aligned_cols=22 Identities=32% Similarity=0.489 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 029453 22 KILFLGLDNSGKTTLLHMLKDE 43 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~ 43 (193)
.++|+|++||||||+++.+...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5799999999999999998653
No 498
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=97.26 E-value=0.00026 Score=51.16 Aligned_cols=26 Identities=35% Similarity=0.474 Sum_probs=22.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
+.-.++++|++|||||||++.+.+-.
T Consensus 27 ~G~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 27 KGEFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44579999999999999999998754
No 499
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.26 E-value=0.00025 Score=46.62 Aligned_cols=21 Identities=38% Similarity=0.501 Sum_probs=18.7
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 029453 23 ILFLGLDNSGKTTLLHMLKDE 43 (193)
Q Consensus 23 i~i~G~~~~GKssl~~~l~~~ 43 (193)
|+|.|.+||||||+++.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998653
No 500
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.26 E-value=0.00028 Score=49.13 Aligned_cols=21 Identities=38% Similarity=0.536 Sum_probs=18.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 029453 22 KILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~ 42 (193)
+|++.|++|+||||+++++..
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~ 21 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIE 21 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHH
Confidence 689999999999999999763
Done!