Query 029453
Match_columns 193
No_of_seqs 123 out of 1785
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 21:41:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029453.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029453hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1f6b_A SAR1; gtpases, N-termin 100.0 8.3E-36 2.8E-40 212.5 19.9 192 2-193 3-198 (198)
2 1m2o_B GTP-binding protein SAR 100.0 1E-34 3.4E-39 205.6 19.0 186 2-192 5-190 (190)
3 1r8s_A ADP-ribosylation factor 100.0 1.4E-32 4.7E-37 189.7 19.1 160 21-192 1-160 (164)
4 1fzq_A ADP-ribosylation factor 100.0 1.6E-32 5.6E-37 192.8 19.2 164 17-192 13-176 (181)
5 1ksh_A ARF-like protein 2; sma 100.0 1.4E-32 4.7E-37 193.7 18.8 163 18-192 16-178 (186)
6 1zj6_A ADP-ribosylation factor 100.0 2E-32 6.8E-37 193.1 18.4 164 17-192 13-176 (187)
7 2b6h_A ADP-ribosylation factor 100.0 1.8E-32 6E-37 194.4 17.5 165 16-192 25-189 (192)
8 1upt_A ARL1, ADP-ribosylation 100.0 3.7E-32 1.3E-36 188.7 18.6 164 17-192 4-167 (171)
9 2x77_A ADP-ribosylation factor 100.0 4.9E-33 1.7E-37 196.5 14.0 163 18-192 20-182 (189)
10 1moz_A ARL1, ADP-ribosylation 100.0 2.1E-32 7.1E-37 192.1 16.9 175 6-192 4-178 (183)
11 1zd9_A ADP-ribosylation factor 100.0 1.1E-31 3.9E-36 189.5 19.9 165 16-192 18-183 (188)
12 2h17_A ADP-ribosylation factor 100.0 5.3E-32 1.8E-36 190.1 16.8 166 15-192 16-181 (181)
13 2h57_A ADP-ribosylation factor 100.0 3E-31 1E-35 187.5 18.1 165 16-192 17-185 (190)
14 4dkx_A RAS-related protein RAB 100.0 8E-32 2.7E-36 193.9 14.6 159 16-192 9-174 (216)
15 4bas_A ADP-ribosylation factor 100.0 2.1E-31 7.2E-36 189.4 16.2 166 16-192 13-187 (199)
16 3o47_A ADP-ribosylation factor 100.0 1.7E-30 5.8E-35 198.1 15.5 163 18-192 163-325 (329)
17 3lvq_E ARF-GAP with SH3 domain 100.0 1.4E-29 4.7E-34 203.1 18.7 165 17-193 319-483 (497)
18 3q72_A GTP-binding protein RAD 100.0 2E-29 6.7E-34 174.2 16.9 156 20-192 2-162 (166)
19 2nzj_A GTP-binding protein REM 100.0 3E-29 1E-33 174.6 17.1 158 18-192 2-167 (175)
20 2fh5_B SR-beta, signal recogni 100.0 8.5E-29 2.9E-33 178.0 19.1 176 17-192 4-214 (214)
21 1c1y_A RAS-related protein RAP 100.0 4.1E-29 1.4E-33 172.6 15.4 158 19-192 2-165 (167)
22 1r2q_A RAS-related protein RAB 100.0 5.9E-29 2E-33 172.2 16.1 158 17-192 3-167 (170)
23 1u8z_A RAS-related protein RAL 100.0 4.8E-29 1.6E-33 172.2 15.5 158 18-192 2-165 (168)
24 4dsu_A GTPase KRAS, isoform 2B 100.0 5.1E-29 1.7E-33 175.5 15.6 158 18-192 2-164 (189)
25 3ihw_A Centg3; RAS, centaurin, 100.0 1E-28 3.5E-33 173.8 17.1 156 16-192 16-178 (184)
26 2hup_A RAS-related protein RAB 100.0 7.7E-29 2.6E-33 176.8 16.4 158 17-192 26-191 (201)
27 1kao_A RAP2A; GTP-binding prot 100.0 3.4E-29 1.2E-33 172.8 14.1 157 19-192 2-164 (167)
28 1wms_A RAB-9, RAB9, RAS-relate 100.0 6.8E-29 2.3E-33 173.2 15.2 161 16-192 3-172 (177)
29 2bov_A RAla, RAS-related prote 100.0 1.6E-28 5.6E-33 175.3 17.1 159 17-192 11-175 (206)
30 1z06_A RAS-related protein RAB 100.0 2E-28 6.9E-33 172.8 17.3 159 17-192 17-186 (189)
31 3bc1_A RAS-related protein RAB 100.0 1.2E-28 4.2E-33 174.1 16.2 159 17-192 8-183 (195)
32 2efe_B Small GTP-binding prote 100.0 2.8E-28 9.6E-33 170.6 17.8 159 16-192 8-173 (181)
33 2fg5_A RAB-22B, RAS-related pr 100.0 1.9E-28 6.6E-33 173.4 17.1 159 16-192 19-184 (192)
34 2a9k_A RAS-related protein RAL 100.0 1.1E-28 3.8E-33 173.4 15.7 160 16-192 14-179 (187)
35 1ek0_A Protein (GTP-binding pr 100.0 2.3E-28 7.8E-33 169.2 16.7 156 19-192 2-167 (170)
36 3t5g_A GTP-binding protein RHE 100.0 5.1E-29 1.7E-33 174.6 13.5 158 18-192 4-167 (181)
37 2bme_A RAB4A, RAS-related prot 100.0 1.7E-28 5.9E-33 172.5 16.2 158 17-192 7-171 (186)
38 2fn4_A P23, RAS-related protei 100.0 1.2E-28 4.2E-33 172.3 15.4 159 17-192 6-170 (181)
39 3tw8_B RAS-related protein RAB 100.0 6.2E-29 2.1E-33 173.8 13.8 157 17-192 6-169 (181)
40 1x3s_A RAS-related protein RAB 100.0 1.7E-28 5.7E-33 173.7 16.2 158 18-192 13-176 (195)
41 3t1o_A Gliding protein MGLA; G 100.0 4.2E-29 1.4E-33 177.1 13.0 158 17-192 11-190 (198)
42 3kkq_A RAS-related protein M-R 100.0 1.4E-28 4.7E-33 172.6 15.6 160 16-192 14-180 (183)
43 3clv_A RAB5 protein, putative; 100.0 3.7E-28 1.3E-32 173.0 17.7 155 18-192 5-202 (208)
44 2hxs_A RAB-26, RAS-related pro 100.0 7.4E-29 2.5E-33 173.1 13.8 159 17-192 3-171 (178)
45 2g6b_A RAS-related protein RAB 100.0 6.3E-29 2.2E-33 173.8 13.5 161 14-192 4-172 (180)
46 3tkl_A RAS-related protein RAB 100.0 2.3E-28 8E-33 173.2 16.5 160 15-192 11-177 (196)
47 1z0j_A RAB-22, RAS-related pro 100.0 2.9E-28 1E-32 168.7 16.6 158 17-192 3-167 (170)
48 3oes_A GTPase rhebl1; small GT 100.0 2.7E-29 9.2E-34 179.1 11.7 158 18-192 22-185 (201)
49 3q85_A GTP-binding protein REM 100.0 1.4E-28 4.9E-33 170.3 14.8 156 20-192 2-165 (169)
50 3reg_A RHO-like small GTPase; 100.0 7.2E-29 2.5E-33 175.8 13.0 166 9-192 12-186 (194)
51 2y8e_A RAB-protein 6, GH09086P 100.0 2.1E-28 7.2E-33 170.8 15.0 159 16-192 10-175 (179)
52 1z2a_A RAS-related protein RAB 100.0 8.9E-29 3E-33 171.0 12.9 156 18-192 3-165 (168)
53 1z0f_A RAB14, member RAS oncog 100.0 6.8E-28 2.3E-32 168.2 17.3 158 17-192 12-176 (179)
54 2f7s_A C25KG, RAS-related prot 100.0 1.3E-28 4.6E-33 177.3 13.6 160 16-192 21-197 (217)
55 2oil_A CATX-8, RAS-related pro 100.0 3.9E-28 1.3E-32 171.9 15.7 158 17-192 22-186 (193)
56 1zbd_A Rabphilin-3A; G protein 100.0 7.1E-28 2.4E-32 171.8 17.1 158 17-192 5-169 (203)
57 2o52_A RAS-related protein RAB 100.0 2.2E-28 7.5E-33 174.3 14.3 158 17-192 22-186 (200)
58 1z08_A RAS-related protein RAB 100.0 1.5E-28 5E-33 170.3 13.1 158 17-192 3-167 (170)
59 3dz8_A RAS-related protein RAB 100.0 7.6E-29 2.6E-33 175.3 11.8 158 17-192 20-184 (191)
60 2ew1_A RAS-related protein RAB 100.0 3.4E-28 1.2E-32 173.5 15.3 158 17-192 23-187 (201)
61 2a5j_A RAS-related protein RAB 100.0 3.7E-28 1.3E-32 171.8 15.3 158 17-192 18-182 (191)
62 2iwr_A Centaurin gamma 1; ANK 100.0 6.7E-28 2.3E-32 168.4 16.2 154 18-192 5-167 (178)
63 3cbq_A GTP-binding protein REM 100.0 6.3E-28 2.1E-32 171.3 16.1 161 15-192 18-186 (195)
64 1ky3_A GTP-binding protein YPT 100.0 5.3E-28 1.8E-32 169.2 15.3 160 17-192 5-176 (182)
65 2fu5_C RAS-related protein RAB 100.0 9E-29 3.1E-33 173.6 11.2 158 17-192 5-169 (183)
66 2il1_A RAB12; G-protein, GDP, 100.0 2.8E-28 9.5E-33 172.7 13.5 160 16-192 22-188 (192)
67 2atv_A RERG, RAS-like estrogen 100.0 3.8E-28 1.3E-32 172.4 14.1 158 17-192 25-189 (196)
68 1g16_A RAS-related protein SEC 100.0 2.2E-28 7.6E-33 169.3 12.5 156 19-192 2-163 (170)
69 2erx_A GTP-binding protein DI- 100.0 4.9E-28 1.7E-32 167.8 14.1 157 19-192 2-165 (172)
70 2yc2_C IFT27, small RAB-relate 100.0 1.7E-28 5.9E-33 175.3 12.0 158 18-192 18-190 (208)
71 2p5s_A RAS and EF-hand domain 100.0 3.5E-28 1.2E-32 173.1 13.5 159 16-192 24-195 (199)
72 2gf9_A RAS-related protein RAB 100.0 5E-28 1.7E-32 170.8 14.0 158 17-192 19-183 (189)
73 2ce2_X GTPase HRAS; signaling 100.0 8.6E-28 3E-32 165.5 14.9 157 19-192 2-163 (166)
74 1vg8_A RAS-related protein RAB 100.0 2.6E-28 8.8E-33 174.5 12.6 160 17-192 5-173 (207)
75 2gf0_A GTP-binding protein DI- 100.0 7E-28 2.4E-32 171.1 14.7 161 15-192 3-169 (199)
76 2bcg_Y Protein YP2, GTP-bindin 100.0 9.4E-28 3.2E-32 171.6 15.4 158 17-192 5-169 (206)
77 3con_A GTPase NRAS; structural 100.0 1.1E-27 3.8E-32 169.1 15.2 159 17-192 18-181 (190)
78 4djt_A GTP-binding nuclear pro 100.0 3.6E-28 1.2E-32 175.2 12.7 160 15-192 6-173 (218)
79 3q3j_B RHO-related GTP-binding 100.0 2.7E-28 9.1E-33 175.6 11.8 158 16-192 23-201 (214)
80 3cpj_B GTP-binding protein YPT 100.0 9.4E-28 3.2E-32 173.8 14.2 158 17-192 10-174 (223)
81 3cph_A RAS-related protein SEC 100.0 1.5E-27 5.2E-32 171.2 14.9 158 17-192 17-180 (213)
82 2gco_A H9, RHO-related GTP-bin 100.0 1.9E-27 6.6E-32 169.5 14.8 172 17-192 22-198 (201)
83 2atx_A Small GTP binding prote 100.0 9.2E-28 3.2E-32 170.0 12.9 170 19-192 17-191 (194)
84 4gzl_A RAS-related C3 botulinu 100.0 2.4E-28 8.2E-33 174.6 9.8 174 15-192 25-203 (204)
85 3c5c_A RAS-like protein 12; GD 100.0 3.2E-28 1.1E-32 171.7 10.3 159 16-192 17-184 (187)
86 3gj0_A GTP-binding nuclear pro 100.0 1.7E-28 5.6E-33 177.4 8.9 158 16-192 11-173 (221)
87 2g3y_A GTP-binding protein GEM 100.0 7.3E-27 2.5E-31 167.6 16.9 158 18-192 35-201 (211)
88 2j1l_A RHO-related GTP-binding 99.9 1.7E-27 5.8E-32 171.4 12.7 173 16-192 30-207 (214)
89 2q3h_A RAS homolog gene family 99.9 1.6E-27 5.3E-32 169.8 12.1 159 16-192 16-193 (201)
90 1mh1_A RAC1; GTP-binding, GTPa 99.9 2E-27 6.9E-32 166.9 12.4 171 18-192 3-178 (186)
91 1m7b_A RND3/RHOE small GTP-bin 99.9 6.5E-28 2.2E-32 169.6 9.7 158 17-192 4-181 (184)
92 2lkc_A Translation initiation 99.9 4.1E-27 1.4E-31 164.3 13.4 163 16-192 4-169 (178)
93 2fv8_A H6, RHO-related GTP-bin 99.9 4.3E-27 1.5E-31 168.4 13.4 172 17-192 22-198 (207)
94 3bwd_D RAC-like GTP-binding pr 99.9 2.6E-28 9E-33 170.9 6.8 154 18-192 6-179 (182)
95 2j0v_A RAC-like GTP-binding pr 99.9 5.9E-28 2E-32 173.4 7.8 157 18-192 7-178 (212)
96 3l0i_B RAS-related protein RAB 99.9 3.8E-28 1.3E-32 172.8 6.3 154 18-192 31-194 (199)
97 1gwn_A RHO-related GTP-binding 99.9 4.6E-27 1.6E-31 168.1 11.3 158 17-192 25-202 (205)
98 2wji_A Ferrous iron transport 99.9 1E-25 3.5E-30 155.7 16.2 148 19-193 2-164 (165)
99 2cjw_A GTP-binding protein GEM 99.9 5.9E-26 2E-30 160.8 15.3 158 18-192 4-170 (192)
100 2dyk_A GTP-binding protein; GT 99.9 1.7E-26 5.8E-31 158.6 11.5 148 21-192 2-160 (161)
101 3llu_A RAS-related GTP-binding 99.9 1.3E-26 4.5E-31 164.5 11.0 167 15-192 15-195 (196)
102 2zej_A Dardarin, leucine-rich 99.9 4.5E-26 1.6E-30 160.2 10.6 159 20-192 2-176 (184)
103 3th5_A RAS-related C3 botulinu 99.9 5E-28 1.7E-32 172.8 0.0 173 16-192 26-203 (204)
104 2qu8_A Putative nucleolar GTP- 99.9 3.1E-25 1.1E-29 161.0 14.2 160 17-192 26-203 (228)
105 2gj8_A MNME, tRNA modification 99.9 6.8E-26 2.3E-30 157.8 9.5 150 19-192 3-164 (172)
106 3iev_A GTP-binding protein ERA 99.9 5.5E-25 1.9E-29 166.4 14.9 158 17-192 7-180 (308)
107 1wf3_A GTP-binding protein; GT 99.9 5.6E-25 1.9E-29 165.6 14.1 154 18-192 5-171 (301)
108 3pqc_A Probable GTP-binding pr 99.9 1.6E-25 5.4E-30 158.3 10.4 159 18-193 21-193 (195)
109 1svi_A GTP-binding protein YSX 99.9 2.8E-25 9.6E-30 157.2 11.5 154 18-193 21-194 (195)
110 2cxx_A Probable GTP-binding pr 99.9 7.6E-26 2.6E-30 159.4 8.3 157 21-192 2-182 (190)
111 3r7w_A Gtpase1, GTP-binding pr 99.9 5.6E-25 1.9E-29 166.3 12.9 156 19-192 2-179 (307)
112 3iby_A Ferrous iron transport 99.9 2.9E-25 9.8E-30 163.7 11.0 144 21-191 2-164 (256)
113 3i8s_A Ferrous iron transport 99.9 3.7E-25 1.3E-29 164.7 11.1 147 19-192 2-167 (274)
114 3a1s_A Iron(II) transport prot 99.9 1E-24 3.5E-29 160.9 12.7 147 18-191 3-164 (258)
115 2wjg_A FEOB, ferrous iron tran 99.9 2.8E-24 9.7E-29 151.2 14.1 148 18-192 5-167 (188)
116 4dhe_A Probable GTP-binding pr 99.9 4.9E-25 1.7E-29 159.2 10.4 160 18-192 27-209 (223)
117 2wkq_A NPH1-1, RAS-related C3 99.9 7.7E-25 2.6E-29 166.9 12.0 172 17-192 152-328 (332)
118 2f9l_A RAB11B, member RAS onco 99.9 6.2E-24 2.1E-28 151.0 15.5 157 18-192 3-166 (199)
119 3b1v_A Ferrous iron uptake tra 99.9 3.5E-24 1.2E-28 159.0 12.6 146 19-192 2-162 (272)
120 3dpu_A RAB family protein; roc 99.9 2.8E-24 9.4E-29 173.7 12.6 168 3-192 19-206 (535)
121 3k53_A Ferrous iron transport 99.9 1.6E-23 5.4E-28 155.8 13.6 147 19-191 2-163 (271)
122 3c5h_A Glucocorticoid receptor 99.9 9.1E-25 3.1E-29 161.1 6.8 162 15-192 14-253 (255)
123 1xzp_A Probable tRNA modificat 99.9 9.7E-24 3.3E-28 167.5 12.9 149 19-192 242-403 (482)
124 3r7w_B Gtpase2, GTP-binding pr 99.9 1.3E-23 4.4E-28 158.1 12.1 159 22-192 1-172 (331)
125 1lnz_A SPO0B-associated GTP-bi 99.9 5E-24 1.7E-28 162.6 9.7 154 21-192 159-328 (342)
126 3gee_A MNME, tRNA modification 99.9 2.3E-23 7.9E-28 165.2 12.8 150 17-192 230-396 (476)
127 1oix_A RAS-related protein RAB 99.9 6.7E-23 2.3E-27 144.9 13.9 157 18-192 27-190 (191)
128 2hjg_A GTP-binding protein ENG 99.9 1.1E-23 3.8E-28 166.3 10.6 156 19-191 174-346 (436)
129 1mky_A Probable GTP-binding pr 99.9 1.2E-23 4E-28 166.2 10.6 149 21-192 2-164 (439)
130 3sjy_A Translation initiation 99.9 1.7E-23 5.8E-28 163.7 11.0 165 15-192 3-190 (403)
131 2hjg_A GTP-binding protein ENG 99.9 9.1E-24 3.1E-28 166.7 8.0 149 20-192 3-163 (436)
132 1ega_A Protein (GTP-binding pr 99.9 5.5E-23 1.9E-27 154.9 11.1 154 18-192 6-173 (301)
133 2e87_A Hypothetical protein PH 99.9 1.5E-22 5.2E-27 156.0 13.7 156 18-192 165-334 (357)
134 4dcu_A GTP-binding protein ENG 99.9 3.1E-23 1.1E-27 164.5 9.8 158 18-192 193-367 (456)
135 1nrj_B SR-beta, signal recogni 99.9 6.2E-23 2.1E-27 147.7 9.8 122 17-139 9-138 (218)
136 1wb1_A Translation elongation 99.9 8.2E-23 2.8E-27 162.8 11.4 162 17-192 16-187 (482)
137 3geh_A MNME, tRNA modification 99.9 6.3E-23 2.1E-27 162.2 9.9 149 18-192 222-382 (462)
138 3qq5_A Small GTP-binding prote 99.9 3.9E-23 1.3E-27 161.5 8.1 151 18-192 32-194 (423)
139 1s0u_A EIF-2-gamma, translatio 99.9 3.2E-21 1.1E-25 151.0 18.0 158 18-192 6-196 (408)
140 3izy_P Translation initiation 99.9 6.1E-24 2.1E-28 170.1 2.4 157 18-191 2-165 (537)
141 4dcu_A GTP-binding protein ENG 99.9 1.1E-22 3.9E-27 161.3 9.0 152 17-192 20-183 (456)
142 2xtp_A GTPase IMAP family memb 99.9 6.6E-22 2.3E-26 146.2 12.3 158 17-192 19-206 (260)
143 3tr5_A RF-3, peptide chain rel 99.9 2.8E-21 9.5E-26 155.1 16.1 125 19-148 12-164 (528)
144 2qtf_A Protein HFLX, GTP-bindi 99.9 3.2E-21 1.1E-25 148.5 15.8 153 20-192 178-352 (364)
145 2ged_A SR-beta, signal recogni 99.9 1.7E-22 5.8E-27 142.7 7.2 130 17-147 45-182 (193)
146 1cip_A Protein (guanine nucleo 99.9 4.8E-22 1.6E-26 152.2 10.0 134 53-192 182-342 (353)
147 1kk1_A EIF2gamma; initiation o 99.9 2.9E-21 1E-25 151.3 14.4 159 17-192 7-198 (410)
148 3cb4_D GTP-binding protein LEP 99.9 1.4E-21 5E-26 158.4 12.8 152 19-192 3-180 (599)
149 2ywe_A GTP-binding protein LEP 99.9 2.2E-21 7.5E-26 157.2 13.8 155 19-192 5-182 (600)
150 1zo1_I IF2, translation initia 99.9 4.7E-23 1.6E-27 163.7 3.8 159 18-190 2-163 (501)
151 1mky_A Probable GTP-binding pr 99.9 9.9E-22 3.4E-26 155.2 10.9 156 19-191 179-352 (439)
152 3p26_A Elongation factor 1 alp 99.9 9.2E-22 3.1E-26 157.1 10.1 158 17-184 30-228 (483)
153 2aka_B Dynamin-1; fusion prote 99.9 5.8E-21 2E-25 143.7 13.3 171 2-190 3-249 (299)
154 3j2k_7 ERF3, eukaryotic polype 99.9 9.5E-21 3.3E-25 149.4 14.9 160 17-186 14-217 (439)
155 3izq_1 HBS1P, elongation facto 99.9 6.7E-22 2.3E-26 161.3 8.2 158 17-184 164-362 (611)
156 2c78_A Elongation factor TU-A; 99.9 4.9E-21 1.7E-25 149.8 12.7 160 16-192 7-210 (405)
157 3ohm_A Guanine nucleotide-bind 99.9 5E-21 1.7E-25 144.7 12.0 134 51-191 154-315 (327)
158 1zcb_A G alpha I/13; GTP-bindi 99.9 2.8E-21 9.5E-26 148.5 10.4 130 56-192 193-351 (362)
159 1d2e_A Elongation factor TU (E 99.9 3.5E-21 1.2E-25 150.2 11.0 157 19-192 2-193 (397)
160 1jny_A EF-1-alpha, elongation 99.8 5.1E-21 1.8E-25 150.9 10.8 157 18-185 4-204 (435)
161 3lxw_A GTPase IMAP family memb 99.8 1.2E-20 4.1E-25 138.4 11.6 168 17-192 18-206 (247)
162 1zun_B Sulfate adenylate trans 99.8 2.1E-20 7E-25 147.5 13.6 157 18-186 22-216 (434)
163 2elf_A Protein translation elo 99.8 4.7E-21 1.6E-25 147.9 9.3 145 22-192 23-178 (370)
164 1g7s_A Translation initiation 99.8 3.6E-21 1.2E-25 156.2 9.1 164 18-191 3-215 (594)
165 1f60_A Elongation factor EEF1A 99.8 4.3E-20 1.5E-24 146.4 13.2 156 17-184 4-202 (458)
166 3lxx_A GTPase IMAP family memb 99.8 6.2E-20 2.1E-24 134.0 12.7 120 16-137 25-161 (239)
167 4fid_A G protein alpha subunit 99.8 4.6E-20 1.6E-24 140.0 12.2 141 52-192 149-326 (340)
168 3t5d_A Septin-7; GTP-binding p 99.8 1.2E-20 4.2E-25 140.4 7.6 157 18-192 6-202 (274)
169 1r5b_A Eukaryotic peptide chai 99.8 4.3E-20 1.5E-24 146.7 11.1 154 17-185 40-243 (467)
170 2xtz_A Guanine nucleotide-bind 99.8 8.8E-21 3E-25 145.2 5.2 128 63-192 182-343 (354)
171 3mca_A HBS1, elongation factor 99.8 1.5E-21 5.1E-26 158.8 0.3 160 17-191 174-394 (592)
172 1jwy_B Dynamin A GTPase domain 99.8 2.7E-19 9.1E-24 135.6 11.9 158 18-192 22-260 (315)
173 1dar_A EF-G, elongation factor 99.8 9.9E-19 3.4E-23 144.6 16.1 115 17-136 9-144 (691)
174 1pui_A ENGB, probable GTP-bind 99.8 1.4E-19 4.9E-24 129.3 9.6 155 17-192 23-197 (210)
175 3avx_A Elongation factor TS, e 99.8 4E-19 1.4E-23 151.1 13.5 159 17-192 293-484 (1289)
176 2h5e_A Peptide chain release f 99.8 2.7E-19 9.1E-24 143.8 11.9 151 18-188 11-189 (529)
177 3def_A T7I23.11 protein; chlor 99.8 5.3E-19 1.8E-23 130.7 12.3 126 16-142 32-174 (262)
178 2dy1_A Elongation factor G; tr 99.8 1.4E-18 4.8E-23 143.3 14.0 112 18-134 7-139 (665)
179 1azs_C GS-alpha; complex (lyas 99.8 5.9E-19 2E-23 136.7 10.5 77 58-134 211-297 (402)
180 2j69_A Bacterial dynamin-like 99.8 1.4E-18 4.8E-23 143.8 12.5 164 17-192 66-323 (695)
181 1udx_A The GTP-binding protein 99.8 1.5E-18 5.2E-23 135.3 10.3 154 21-192 158-323 (416)
182 2xex_A Elongation factor G; GT 99.8 1.1E-17 3.8E-22 138.4 16.0 115 17-136 7-142 (693)
183 2rdo_7 EF-G, elongation factor 99.8 1.6E-17 5.5E-22 137.6 16.7 115 17-136 7-149 (704)
184 2x2e_A Dynamin-1; nitration, h 99.7 1.8E-17 6.2E-22 127.4 13.0 155 19-190 30-254 (353)
185 1wxq_A GTP-binding protein; st 99.7 5.8E-19 2E-23 137.3 4.3 80 21-100 1-114 (397)
186 1h65_A Chloroplast outer envel 99.7 4.2E-17 1.4E-21 121.0 14.2 118 17-135 36-168 (270)
187 2qag_A Septin-2, protein NEDD5 99.7 3.4E-19 1.2E-23 137.3 1.5 156 17-191 34-230 (361)
188 3t34_A Dynamin-related protein 99.7 1.4E-17 4.8E-22 128.4 9.6 149 19-187 33-254 (360)
189 3vqt_A RF-3, peptide chain rel 99.7 1.9E-16 6.4E-21 127.8 15.1 122 21-147 32-181 (548)
190 3p32_A Probable GTPase RV1496/ 99.7 1.9E-17 6.5E-22 127.4 6.6 155 16-192 75-282 (355)
191 3l82_B F-box only protein 4; T 99.7 1.7E-16 5.7E-21 111.4 8.4 109 71-193 109-222 (227)
192 2qpt_A EH domain-containing pr 99.7 1.1E-16 3.7E-21 129.3 8.5 115 18-136 63-233 (550)
193 2www_A Methylmalonic aciduria 99.7 1.4E-16 4.9E-21 122.1 7.8 153 18-192 72-277 (349)
194 1jal_A YCHF protein; nucleotid 99.7 4.5E-15 1.5E-19 113.6 14.8 79 21-99 3-108 (363)
195 1n0u_A EF-2, elongation factor 99.6 5.1E-16 1.8E-20 130.9 10.3 114 16-134 15-163 (842)
196 3j25_A Tetracycline resistance 99.6 1.1E-16 3.7E-21 131.5 4.1 166 22-192 4-237 (638)
197 3zvr_A Dynamin-1; hydrolase, D 99.6 3.7E-15 1.3E-19 123.3 13.1 156 18-190 49-274 (772)
198 2p67_A LAO/AO transport system 99.6 2.3E-16 8E-21 120.7 5.2 153 17-191 53-258 (341)
199 2wsm_A Hydrogenase expression/ 99.6 1.3E-16 4.6E-21 114.7 3.2 147 19-192 29-212 (221)
200 2qnr_A Septin-2, protein NEDD5 99.6 4.7E-16 1.6E-20 117.0 4.6 152 17-192 15-212 (301)
201 1yrb_A ATP(GTP)binding protein 99.6 1.8E-16 6.1E-21 117.0 2.2 125 64-192 109-255 (262)
202 4a9a_A Ribosome-interacting GT 99.6 2.1E-14 7.1E-19 110.5 11.4 111 21-133 73-194 (376)
203 3l2o_B F-box only protein 4; s 99.6 2.5E-15 8.6E-20 110.3 5.4 109 71-193 194-307 (312)
204 4fn5_A EF-G 1, elongation fact 99.6 7.2E-14 2.4E-18 116.2 14.2 109 22-135 15-151 (709)
205 1u0l_A Probable GTPase ENGC; p 99.5 1.3E-15 4.3E-20 114.7 1.6 131 35-190 32-169 (301)
206 2dby_A GTP-binding protein; GD 99.5 1.4E-13 4.7E-18 105.9 12.7 79 21-99 2-111 (368)
207 2qm8_A GTPase/ATPase; G protei 99.5 1.8E-14 6E-19 110.0 6.9 153 17-191 52-258 (337)
208 2qag_C Septin-7; cell cycle, c 99.5 4.4E-15 1.5E-19 115.9 3.4 154 18-190 29-223 (418)
209 2hf9_A Probable hydrogenase ni 99.5 2.2E-14 7.4E-19 103.5 3.9 57 121-192 164-222 (226)
210 2ohf_A Protein OLA1, GTP-bindi 99.3 2.8E-12 9.5E-17 99.1 8.5 86 15-100 17-129 (396)
211 2j37_W Signal recognition part 99.2 3.1E-10 1.1E-14 90.5 12.7 162 18-191 99-310 (504)
212 1ni3_A YCHF GTPase, YCHF GTP-b 99.1 5.5E-10 1.9E-14 86.5 10.1 84 16-99 16-127 (392)
213 2yv5_A YJEQ protein; hydrolase 99.1 3.4E-11 1.2E-15 90.5 2.9 96 74-190 66-165 (302)
214 2qag_B Septin-6, protein NEDD5 99.0 1.3E-09 4.4E-14 85.0 7.8 110 21-136 43-191 (427)
215 3sop_A Neuronal-specific septi 98.9 3.3E-09 1.1E-13 78.4 8.8 109 20-135 2-154 (270)
216 1puj_A YLQF, conserved hypothe 98.9 9E-10 3.1E-14 81.9 5.0 100 68-191 3-103 (282)
217 1tq4_A IIGP1, interferon-induc 98.9 5.8E-09 2E-13 81.3 9.6 160 19-192 68-251 (413)
218 3ec1_A YQEH GTPase; atnos1, at 98.9 1.7E-10 5.9E-15 89.0 0.8 123 20-148 162-305 (369)
219 3h2y_A GTPase family protein; 98.9 6.3E-09 2.2E-13 80.2 7.9 101 73-190 55-156 (368)
220 3h2y_A GTPase family protein; 98.8 8.7E-10 3E-14 85.0 2.5 111 20-136 160-288 (368)
221 2v3c_C SRP54, signal recogniti 98.8 3.8E-09 1.3E-13 83.0 3.8 160 20-191 99-308 (432)
222 3ec1_A YQEH GTPase; atnos1, at 98.8 1E-08 3.4E-13 79.1 5.9 102 73-191 57-159 (369)
223 1puj_A YLQF, conserved hypothe 98.6 5E-08 1.7E-12 72.5 6.2 56 17-75 117-176 (282)
224 3cnl_A YLQF, putative uncharac 98.6 1E-08 3.4E-13 75.5 2.0 54 21-75 100-155 (262)
225 3szr_A Interferon-induced GTP- 98.6 5.8E-08 2E-12 79.5 6.1 25 20-44 45-69 (608)
226 3dm5_A SRP54, signal recogniti 98.5 9.6E-07 3.3E-11 69.3 11.5 109 19-134 99-252 (443)
227 3cnl_A YLQF, putative uncharac 98.5 1.1E-08 3.7E-13 75.3 -0.5 94 71-191 4-98 (262)
228 1f5n_A Interferon-induced guan 98.5 3.5E-07 1.2E-11 74.3 7.5 60 16-75 34-102 (592)
229 1t9h_A YLOQ, probable GTPase E 98.2 4.4E-07 1.5E-11 68.0 3.0 87 83-189 82-172 (307)
230 3kl4_A SRP54, signal recogniti 98.2 3.4E-06 1.2E-10 66.1 6.3 109 19-134 96-251 (433)
231 1j8m_F SRP54, signal recogniti 98.0 4.8E-05 1.6E-09 56.9 9.3 65 62-134 179-252 (297)
232 3q5d_A Atlastin-1; G protein, 97.9 0.00021 7.2E-09 56.2 11.4 27 17-43 64-90 (447)
233 2rcn_A Probable GTPase ENGC; Y 97.8 3.5E-05 1.2E-09 58.9 5.6 83 85-189 128-214 (358)
234 1ye8_A Protein THEP1, hypothet 97.7 1.6E-05 5.6E-10 54.9 3.2 22 22-43 2-23 (178)
235 2xxa_A Signal recognition part 97.7 7E-05 2.4E-09 58.9 7.0 122 19-148 99-268 (433)
236 1bif_A 6-phosphofructo-2-kinas 97.7 4.7E-06 1.6E-10 66.3 0.3 85 17-101 36-134 (469)
237 3tif_A Uncharacterized ABC tra 97.7 6.3E-05 2.2E-09 54.3 5.2 25 20-44 31-55 (235)
238 1kgd_A CASK, peripheral plasma 97.6 3.2E-05 1.1E-09 53.4 2.9 23 21-43 6-28 (180)
239 1lvg_A Guanylate kinase, GMP k 97.6 3.2E-05 1.1E-09 54.3 2.9 22 21-42 5-26 (198)
240 3c8u_A Fructokinase; YP_612366 97.6 9.6E-05 3.3E-09 52.1 5.4 27 17-43 19-45 (208)
241 2pcj_A ABC transporter, lipopr 97.6 8.8E-05 3E-09 53.1 5.2 24 21-44 31-54 (224)
242 2onk_A Molybdate/tungstate ABC 97.6 0.00011 3.6E-09 53.2 5.3 24 21-44 25-48 (240)
243 3gfo_A Cobalt import ATP-bindi 97.6 0.0001 3.5E-09 54.4 5.2 24 21-44 35-58 (275)
244 1b0u_A Histidine permease; ABC 97.5 0.00011 3.8E-09 53.9 5.2 24 21-44 33-56 (262)
245 1znw_A Guanylate kinase, GMP k 97.5 4.1E-05 1.4E-09 54.0 2.8 27 18-44 18-44 (207)
246 3tr0_A Guanylate kinase, GMP k 97.5 4.2E-05 1.4E-09 53.6 2.9 24 20-43 7-30 (205)
247 3a00_A Guanylate kinase, GMP k 97.5 4.2E-05 1.5E-09 53.0 2.8 22 22-43 3-24 (186)
248 4gp7_A Metallophosphoesterase; 97.5 4.5E-05 1.5E-09 52.2 2.7 21 21-41 10-30 (171)
249 1g6h_A High-affinity branched- 97.5 0.00013 4.3E-09 53.4 5.2 25 20-44 33-57 (257)
250 1zp6_A Hypothetical protein AT 97.5 6.9E-05 2.4E-09 51.9 3.5 26 18-43 7-32 (191)
251 1ji0_A ABC transporter; ATP bi 97.5 0.00013 4.6E-09 52.7 5.2 24 21-44 33-56 (240)
252 1sgw_A Putative ABC transporte 97.5 0.00018 6.1E-09 51.1 5.5 23 22-44 37-59 (214)
253 1z6g_A Guanylate kinase; struc 97.5 5.3E-05 1.8E-09 54.0 2.8 25 19-43 22-46 (218)
254 2ff7_A Alpha-hemolysin translo 97.5 0.00019 6.4E-09 52.2 5.7 24 21-44 36-59 (247)
255 2olj_A Amino acid ABC transpor 97.5 0.00013 4.6E-09 53.4 5.0 25 20-44 50-74 (263)
256 1s96_A Guanylate kinase, GMP k 97.5 6.3E-05 2.1E-09 53.7 2.9 25 20-44 16-40 (219)
257 4g1u_C Hemin import ATP-bindin 97.5 0.00015 5.1E-09 53.3 5.0 24 21-44 38-61 (266)
258 3fvq_A Fe(3+) IONS import ATP- 97.5 0.0002 7E-09 54.7 5.8 24 21-44 31-54 (359)
259 3asz_A Uridine kinase; cytidin 97.4 7.4E-05 2.5E-09 52.7 3.2 25 18-42 4-28 (211)
260 1vpl_A ABC transporter, ATP-bi 97.4 0.00021 7.1E-09 52.2 5.5 25 20-44 41-65 (256)
261 1htw_A HI0065; nucleotide-bind 97.4 7.5E-05 2.6E-09 50.5 2.8 27 18-44 31-57 (158)
262 2ixe_A Antigen peptide transpo 97.4 0.00026 8.7E-09 52.2 5.7 24 21-44 46-69 (271)
263 2yz2_A Putative ABC transporte 97.4 0.00021 7.1E-09 52.5 5.2 24 21-44 34-57 (266)
264 4eun_A Thermoresistant glucoki 97.4 0.00011 3.7E-09 51.5 3.2 24 19-42 28-51 (200)
265 2cbz_A Multidrug resistance-as 97.4 0.00011 3.6E-09 53.1 3.2 25 20-44 31-55 (237)
266 3ec2_A DNA replication protein 97.4 0.00014 4.8E-09 49.9 3.7 38 5-43 24-61 (180)
267 3nh6_A ATP-binding cassette SU 97.4 0.00014 4.7E-09 54.5 3.8 25 20-44 80-104 (306)
268 1g29_1 MALK, maltose transport 97.4 0.00035 1.2E-08 53.8 6.1 23 22-44 31-53 (372)
269 3ney_A 55 kDa erythrocyte memb 97.4 0.0001 3.5E-09 51.6 2.9 25 19-43 18-42 (197)
270 2bbw_A Adenylate kinase 4, AK4 97.4 0.00013 4.4E-09 52.9 3.5 23 19-41 26-48 (246)
271 3tui_C Methionine import ATP-b 97.3 0.00026 9E-09 54.2 5.3 24 21-44 55-78 (366)
272 1mv5_A LMRA, multidrug resista 97.3 0.00012 4E-09 53.1 3.2 25 20-44 28-52 (243)
273 1kag_A SKI, shikimate kinase I 97.3 0.00011 3.6E-09 50.1 2.9 22 21-42 5-26 (173)
274 3tau_A Guanylate kinase, GMP k 97.3 0.0001 3.5E-09 52.0 2.9 26 19-44 7-32 (208)
275 2pze_A Cystic fibrosis transme 97.3 0.00012 4.2E-09 52.5 3.2 24 21-44 35-58 (229)
276 2j41_A Guanylate kinase; GMP, 97.3 0.00013 4.5E-09 51.1 3.3 26 19-44 5-30 (207)
277 3b85_A Phosphate starvation-in 97.3 0.0001 3.4E-09 52.2 2.6 24 20-43 22-45 (208)
278 3rlf_A Maltose/maltodextrin im 97.3 0.00029 1E-08 54.3 5.3 24 21-44 30-53 (381)
279 1z47_A CYSA, putative ABC-tran 97.3 0.0003 1E-08 53.8 5.3 24 21-44 42-65 (355)
280 2yyz_A Sugar ABC transporter, 97.3 0.0003 1E-08 53.8 5.3 24 21-44 30-53 (359)
281 2d2e_A SUFC protein; ABC-ATPas 97.3 0.00013 4.4E-09 53.1 3.1 23 21-43 30-52 (250)
282 2it1_A 362AA long hypothetical 97.3 0.00032 1.1E-08 53.8 5.3 24 21-44 30-53 (362)
283 2i3b_A HCR-ntpase, human cance 97.3 0.00011 3.9E-09 51.1 2.7 22 22-43 3-24 (189)
284 2qi9_C Vitamin B12 import ATP- 97.3 0.00014 4.8E-09 52.9 3.2 24 21-44 27-50 (249)
285 2bdt_A BH3686; alpha-beta prot 97.3 0.00012 4.3E-09 50.6 2.8 21 22-42 4-24 (189)
286 2ihy_A ABC transporter, ATP-bi 97.3 0.00014 4.8E-09 53.8 3.2 24 21-44 48-71 (279)
287 2ghi_A Transport protein; mult 97.3 0.00014 4.8E-09 53.2 3.2 25 20-44 46-70 (260)
288 2zu0_C Probable ATP-dependent 97.3 0.00015 5.3E-09 53.2 3.3 24 20-43 46-69 (267)
289 3lw7_A Adenylate kinase relate 97.3 0.00016 5.5E-09 49.1 3.2 20 21-40 2-21 (179)
290 1cke_A CK, MSSA, protein (cyti 97.3 0.00017 5.8E-09 51.3 3.4 23 20-42 5-27 (227)
291 2rcn_A Probable GTPase ENGC; Y 97.3 0.00016 5.5E-09 55.3 3.4 25 21-45 216-240 (358)
292 1v43_A Sugar-binding transport 97.3 0.00037 1.3E-08 53.7 5.3 24 21-44 38-61 (372)
293 2nq2_C Hypothetical ABC transp 97.3 0.00017 5.7E-09 52.6 3.2 23 22-44 33-55 (253)
294 2qt1_A Nicotinamide riboside k 97.3 0.00023 8E-09 50.0 3.9 27 17-43 18-44 (207)
295 3aez_A Pantothenate kinase; tr 97.3 0.00018 6.3E-09 54.0 3.5 26 17-42 87-112 (312)
296 1odf_A YGR205W, hypothetical 3 97.2 0.00045 1.5E-08 51.4 5.5 25 17-41 28-52 (290)
297 2v9p_A Replication protein E1; 97.2 0.00016 5.3E-09 54.2 3.0 25 18-42 124-148 (305)
298 2if2_A Dephospho-COA kinase; a 97.2 0.00018 6.1E-09 50.4 3.1 22 21-42 2-23 (204)
299 2jeo_A Uridine-cytidine kinase 97.2 0.00019 6.5E-09 52.0 3.3 24 19-42 24-47 (245)
300 1tue_A Replication protein E1; 97.2 0.00032 1.1E-08 49.3 4.3 22 21-42 59-80 (212)
301 2ffh_A Protein (FFH); SRP54, s 97.2 0.00055 1.9E-08 53.6 6.0 66 62-134 179-250 (425)
302 1oxx_K GLCV, glucose, ABC tran 97.2 0.00028 9.6E-09 53.9 4.2 24 21-44 32-55 (353)
303 2pjz_A Hypothetical protein ST 97.2 0.0002 6.7E-09 52.6 3.2 24 21-44 31-54 (263)
304 2cdn_A Adenylate kinase; phosp 97.2 0.00025 8.5E-09 49.6 3.7 27 16-42 16-42 (201)
305 1knq_A Gluconate kinase; ALFA/ 97.2 0.00022 7.4E-09 48.7 3.3 24 19-42 7-30 (175)
306 4dzz_A Plasmid partitioning pr 97.2 0.0024 8.1E-08 44.5 8.8 68 63-134 75-143 (206)
307 1jjv_A Dephospho-COA kinase; P 97.2 0.00021 7.2E-09 50.2 3.3 22 21-42 3-24 (206)
308 3d31_A Sulfate/molybdate ABC t 97.2 0.00029 9.9E-09 53.7 4.2 24 21-44 27-50 (348)
309 2eyu_A Twitching motility prot 97.2 0.00018 6E-09 52.8 2.9 26 17-42 22-47 (261)
310 2qor_A Guanylate kinase; phosp 97.2 0.0002 6.7E-09 50.3 3.0 24 19-42 11-34 (204)
311 3kb2_A SPBC2 prophage-derived 97.2 0.00021 7.1E-09 48.5 3.1 21 22-42 3-23 (173)
312 1ex7_A Guanylate kinase; subst 97.2 0.00021 7.1E-09 49.6 3.1 21 23-43 4-24 (186)
313 4a74_A DNA repair and recombin 97.2 0.00019 6.6E-09 51.0 2.8 26 17-42 22-47 (231)
314 3lnc_A Guanylate kinase, GMP k 97.2 0.00012 4.2E-09 52.4 1.8 25 19-43 26-51 (231)
315 2ehv_A Hypothetical protein PH 97.2 0.00022 7.4E-09 51.5 3.1 24 18-41 28-51 (251)
316 3uie_A Adenylyl-sulfate kinase 97.2 0.00026 8.7E-09 49.6 3.3 25 18-42 23-47 (200)
317 3tqc_A Pantothenate kinase; bi 97.2 0.00026 8.9E-09 53.4 3.5 26 17-42 89-114 (321)
318 2bbs_A Cystic fibrosis transme 97.1 0.00025 8.4E-09 52.8 3.2 24 21-44 65-88 (290)
319 1ly1_A Polynucleotide kinase; 97.1 0.00029 9.8E-09 48.2 3.3 22 21-42 3-24 (181)
320 3vaa_A Shikimate kinase, SK; s 97.1 0.00029 1E-08 49.2 3.4 23 19-41 24-46 (199)
321 3cm0_A Adenylate kinase; ATP-b 97.1 0.0003 1E-08 48.4 3.4 22 20-41 4-25 (186)
322 3fb4_A Adenylate kinase; psych 97.1 0.00027 9.2E-09 49.9 3.2 20 22-41 2-21 (216)
323 1u0l_A Probable GTPase ENGC; p 97.1 0.00029 9.8E-09 52.7 3.4 26 20-45 169-194 (301)
324 1kht_A Adenylate kinase; phosp 97.1 0.0003 1E-08 48.5 3.2 23 20-42 3-25 (192)
325 1lw7_A Transcriptional regulat 97.1 0.00021 7.3E-09 54.8 2.6 25 20-44 170-194 (365)
326 1gvn_B Zeta; postsegregational 97.1 0.00044 1.5E-08 51.3 4.2 26 17-42 30-55 (287)
327 1t9h_A YLOQ, probable GTPase E 97.1 8.9E-05 3E-09 55.6 0.4 26 19-44 172-197 (307)
328 3dl0_A Adenylate kinase; phosp 97.1 0.0003 1E-08 49.7 3.2 21 22-42 2-22 (216)
329 1y63_A LMAJ004144AAA protein; 97.1 0.00036 1.2E-08 48.1 3.4 25 19-43 9-33 (184)
330 2p5t_B PEZT; postsegregational 97.1 0.00031 1.1E-08 51.1 3.2 28 15-42 27-54 (253)
331 1aky_A Adenylate kinase; ATP:A 97.1 0.00036 1.2E-08 49.5 3.4 24 19-42 3-26 (220)
332 3t61_A Gluconokinase; PSI-biol 97.1 0.0003 1E-08 49.2 3.0 23 20-42 18-40 (202)
333 2f1r_A Molybdopterin-guanine d 97.1 0.00014 4.8E-09 49.8 1.2 52 21-77 3-54 (171)
334 1sq5_A Pantothenate kinase; P- 97.1 0.00035 1.2E-08 52.4 3.5 25 18-42 78-102 (308)
335 1tev_A UMP-CMP kinase; ploop, 97.1 0.00037 1.3E-08 48.2 3.3 23 20-42 3-25 (196)
336 3tlx_A Adenylate kinase 2; str 97.1 0.00039 1.3E-08 50.3 3.6 24 18-41 27-50 (243)
337 3end_A Light-independent proto 97.1 0.007 2.4E-07 45.1 10.5 84 63-150 156-240 (307)
338 2rhm_A Putative kinase; P-loop 97.1 0.00038 1.3E-08 48.1 3.4 24 19-42 4-27 (193)
339 1np6_A Molybdopterin-guanine d 97.1 0.00032 1.1E-08 48.1 2.9 24 20-43 6-29 (174)
340 4e22_A Cytidylate kinase; P-lo 97.1 0.0004 1.4E-08 50.5 3.5 24 18-41 25-48 (252)
341 1qhx_A CPT, protein (chloramph 97.1 0.00033 1.1E-08 47.8 2.9 22 21-42 4-25 (178)
342 1zd8_A GTP:AMP phosphotransfer 97.1 0.00038 1.3E-08 49.7 3.3 24 18-41 5-28 (227)
343 2yvu_A Probable adenylyl-sulfa 97.0 0.00049 1.7E-08 47.4 3.8 27 16-42 9-35 (186)
344 2jaq_A Deoxyguanosine kinase; 97.0 0.00039 1.3E-08 48.5 3.3 21 22-42 2-22 (205)
345 1rz3_A Hypothetical protein rb 97.0 0.00043 1.5E-08 48.5 3.5 26 17-42 19-44 (201)
346 1uf9_A TT1252 protein; P-loop, 97.0 0.00041 1.4E-08 48.3 3.4 27 17-43 5-31 (203)
347 2yv5_A YJEQ protein; hydrolase 97.0 0.00033 1.1E-08 52.4 3.0 24 20-44 165-188 (302)
348 2plr_A DTMP kinase, probable t 97.0 0.00044 1.5E-08 48.5 3.4 24 19-42 3-26 (213)
349 3trf_A Shikimate kinase, SK; a 97.0 0.00045 1.5E-08 47.5 3.3 22 20-41 5-26 (185)
350 1nks_A Adenylate kinase; therm 97.0 0.00043 1.5E-08 47.8 3.2 21 22-42 3-23 (194)
351 2c95_A Adenylate kinase 1; tra 97.0 0.00049 1.7E-08 47.7 3.5 23 19-41 8-30 (196)
352 2v54_A DTMP kinase, thymidylat 97.0 0.00049 1.7E-08 48.0 3.4 25 19-43 3-27 (204)
353 3gd7_A Fusion complex of cysti 97.0 0.00038 1.3E-08 53.9 3.0 24 21-44 48-71 (390)
354 2kjq_A DNAA-related protein; s 97.0 0.0003 1E-08 47.0 2.1 25 19-43 35-59 (149)
355 3sr0_A Adenylate kinase; phosp 97.0 0.0005 1.7E-08 48.5 3.3 21 22-42 2-22 (206)
356 3be4_A Adenylate kinase; malar 97.0 0.00051 1.7E-08 48.7 3.4 24 19-42 4-27 (217)
357 1e4v_A Adenylate kinase; trans 97.0 0.00052 1.8E-08 48.5 3.2 21 22-42 2-22 (214)
358 1nn5_A Similar to deoxythymidy 96.9 0.00056 1.9E-08 48.1 3.4 24 19-42 8-31 (215)
359 1via_A Shikimate kinase; struc 96.9 0.00047 1.6E-08 47.1 2.8 21 22-42 6-26 (175)
360 2wwf_A Thymidilate kinase, put 96.9 0.00055 1.9E-08 48.1 3.3 24 19-42 9-32 (212)
361 2x8a_A Nuclear valosin-contain 96.9 0.00043 1.5E-08 51.0 2.8 21 23-43 47-67 (274)
362 2w58_A DNAI, primosome compone 96.9 0.0015 5.1E-08 45.6 5.4 22 21-42 55-76 (202)
363 3iij_A Coilin-interacting nucl 96.9 0.00059 2E-08 46.7 3.3 23 19-41 10-32 (180)
364 3jvv_A Twitching mobility prot 96.9 0.00043 1.5E-08 53.0 2.8 21 22-42 125-145 (356)
365 3b60_A Lipid A export ATP-bind 96.9 0.0013 4.3E-08 53.7 5.7 25 20-44 369-393 (582)
366 1rj9_A FTSY, signal recognitio 96.9 0.00066 2.3E-08 50.8 3.7 23 19-41 101-123 (304)
367 1zak_A Adenylate kinase; ATP:A 96.9 0.00055 1.9E-08 48.6 3.0 23 19-41 4-26 (222)
368 1vht_A Dephospho-COA kinase; s 96.9 0.00065 2.2E-08 48.1 3.4 24 19-42 3-26 (218)
369 3b9q_A Chloroplast SRP recepto 96.9 0.0005 1.7E-08 51.4 2.9 23 19-41 99-121 (302)
370 2pt5_A Shikimate kinase, SK; a 96.9 0.00064 2.2E-08 45.9 3.2 21 22-42 2-22 (168)
371 2pt7_A CAG-ALFA; ATPase, prote 96.9 0.00051 1.7E-08 52.1 2.9 26 19-44 170-195 (330)
372 1ukz_A Uridylate kinase; trans 96.9 0.00074 2.5E-08 47.2 3.6 23 19-41 14-36 (203)
373 1ak2_A Adenylate kinase isoenz 96.9 0.00074 2.5E-08 48.4 3.6 26 17-42 13-38 (233)
374 2gza_A Type IV secretion syste 96.9 0.00055 1.9E-08 52.5 3.0 26 19-44 174-199 (361)
375 3b5x_A Lipid A export ATP-bind 96.9 0.0011 3.7E-08 54.2 4.8 26 19-44 368-393 (582)
376 1xjc_A MOBB protein homolog; s 96.9 0.00076 2.6E-08 46.0 3.3 23 20-42 4-26 (169)
377 3r20_A Cytidylate kinase; stru 96.9 0.0007 2.4E-08 48.7 3.2 24 18-41 7-30 (233)
378 2bwj_A Adenylate kinase 5; pho 96.8 0.00068 2.3E-08 47.1 3.1 23 20-42 12-34 (199)
379 2yl4_A ATP-binding cassette SU 96.8 0.0013 4.4E-08 53.9 5.1 25 20-44 370-394 (595)
380 1uj2_A Uridine-cytidine kinase 96.8 0.00072 2.4E-08 49.1 3.3 24 19-42 21-44 (252)
381 1ixz_A ATP-dependent metallopr 96.8 0.00062 2.1E-08 49.4 2.9 22 22-43 51-72 (254)
382 3qf4_B Uncharacterized ABC tra 96.8 0.0015 5E-08 53.5 5.2 26 19-44 380-405 (598)
383 3e70_C DPA, signal recognition 96.8 0.00084 2.9E-08 50.8 3.5 25 18-42 127-151 (328)
384 2pez_A Bifunctional 3'-phospho 96.8 0.00086 2.9E-08 45.9 3.3 24 19-42 4-27 (179)
385 2ewv_A Twitching motility prot 96.8 0.00069 2.4E-08 52.2 3.0 25 18-42 134-158 (372)
386 2w0m_A SSO2452; RECA, SSPF, un 96.8 0.00071 2.4E-08 48.1 2.8 23 19-41 22-44 (235)
387 2xb4_A Adenylate kinase; ATP-b 96.8 0.00088 3E-08 47.7 3.3 21 22-42 2-22 (223)
388 2pbr_A DTMP kinase, thymidylat 96.8 0.00085 2.9E-08 46.3 3.1 21 22-42 2-22 (195)
389 4a82_A Cystic fibrosis transme 96.8 0.0012 4E-08 53.9 4.4 25 20-44 367-391 (578)
390 2ze6_A Isopentenyl transferase 96.8 0.00079 2.7E-08 49.0 3.1 20 22-41 3-22 (253)
391 2iyv_A Shikimate kinase, SK; t 96.8 0.00069 2.3E-08 46.6 2.6 21 22-42 4-24 (184)
392 2npi_A Protein CLP1; CLP1-PCF1 96.8 0.00061 2.1E-08 53.9 2.6 26 18-43 136-161 (460)
393 2z0h_A DTMP kinase, thymidylat 96.8 0.00078 2.7E-08 46.7 2.9 21 22-42 2-22 (197)
394 2vp4_A Deoxynucleoside kinase; 96.8 0.0007 2.4E-08 48.5 2.7 26 18-43 18-43 (230)
395 2vli_A Antibiotic resistance p 96.8 0.0006 2.1E-08 46.7 2.2 24 19-42 4-27 (183)
396 2f6r_A COA synthase, bifunctio 96.8 0.00098 3.3E-08 49.3 3.5 24 18-41 73-96 (281)
397 2obl_A ESCN; ATPase, hydrolase 96.8 0.0008 2.8E-08 51.3 3.1 27 18-44 69-95 (347)
398 1in4_A RUVB, holliday junction 96.8 0.00073 2.5E-08 51.2 2.8 23 21-43 52-74 (334)
399 2grj_A Dephospho-COA kinase; T 96.7 0.00099 3.4E-08 46.4 3.2 24 19-42 11-34 (192)
400 1qf9_A UMP/CMP kinase, protein 96.7 0.0011 3.9E-08 45.6 3.5 22 21-42 7-28 (194)
401 3a4m_A L-seryl-tRNA(SEC) kinas 96.7 0.001 3.4E-08 48.6 3.3 23 20-42 4-26 (260)
402 1e6c_A Shikimate kinase; phosp 96.7 0.00092 3.2E-08 45.3 2.9 21 22-42 4-24 (173)
403 3kta_A Chromosome segregation 96.7 0.001 3.4E-08 45.6 3.0 21 22-42 28-48 (182)
404 1p9r_A General secretion pathw 96.7 0.00081 2.8E-08 52.6 2.8 25 18-42 165-189 (418)
405 1cr0_A DNA primase/helicase; R 96.7 0.00085 2.9E-08 49.9 2.8 26 17-42 32-57 (296)
406 1yqt_A RNAse L inhibitor; ATP- 96.7 0.00099 3.4E-08 53.8 3.3 26 19-44 46-71 (538)
407 2oap_1 GSPE-2, type II secreti 96.7 0.0009 3.1E-08 53.7 3.1 25 20-44 260-284 (511)
408 3umf_A Adenylate kinase; rossm 96.7 0.0015 5.2E-08 46.4 3.9 21 22-42 31-51 (217)
409 1gtv_A TMK, thymidylate kinase 96.7 0.00038 1.3E-08 49.0 0.8 21 22-42 2-22 (214)
410 1zuh_A Shikimate kinase; alpha 96.7 0.0012 4E-08 44.7 3.2 22 21-42 8-29 (168)
411 1iy2_A ATP-dependent metallopr 96.7 0.00094 3.2E-08 49.2 2.9 22 22-43 75-96 (278)
412 3ozx_A RNAse L inhibitor; ATP 96.7 0.001 3.6E-08 53.7 3.3 30 15-44 20-49 (538)
413 1nij_A Hypothetical protein YJ 96.6 0.0008 2.7E-08 50.7 2.4 24 21-44 5-28 (318)
414 3nwj_A ATSK2; P loop, shikimat 96.6 0.00097 3.3E-08 48.5 2.6 23 20-42 48-70 (250)
415 3euj_A Chromosome partition pr 96.6 0.001 3.5E-08 52.9 2.9 22 21-42 30-51 (483)
416 2yhs_A FTSY, cell division pro 96.6 0.001 3.5E-08 52.9 2.9 23 19-41 292-314 (503)
417 2og2_A Putative signal recogni 96.6 0.0013 4.4E-08 50.4 3.4 23 19-41 156-178 (359)
418 1jbk_A CLPB protein; beta barr 96.6 0.0016 5.4E-08 44.5 3.6 25 19-43 42-66 (195)
419 3gmt_A Adenylate kinase; ssgci 96.6 0.0014 4.8E-08 46.9 3.3 23 19-41 7-29 (230)
420 2dpy_A FLII, flagellum-specifi 96.6 0.0012 4E-08 52.0 3.1 28 17-44 154-181 (438)
421 3j16_B RLI1P; ribosome recycli 96.6 0.0011 3.9E-08 54.2 3.1 26 19-44 102-127 (608)
422 2cvh_A DNA repair and recombin 96.6 0.0012 4E-08 46.6 2.8 26 17-42 17-42 (220)
423 1n0w_A DNA repair protein RAD5 96.6 0.0012 4E-08 47.3 2.9 26 17-42 21-46 (243)
424 1q3t_A Cytidylate kinase; nucl 96.6 0.0016 5.3E-08 46.8 3.5 26 17-42 13-38 (236)
425 4b4t_L 26S protease subunit RP 96.6 0.035 1.2E-06 43.6 11.3 26 17-42 212-237 (437)
426 4eaq_A DTMP kinase, thymidylat 96.5 0.002 6.8E-08 46.1 3.7 25 18-42 24-48 (229)
427 3qf4_A ABC transporter, ATP-bi 96.5 0.0018 6.3E-08 52.9 3.9 25 20-44 369-393 (587)
428 1lv7_A FTSH; alpha/beta domain 96.5 0.0014 4.8E-08 47.6 2.9 23 20-42 45-67 (257)
429 1m7g_A Adenylylsulfate kinase; 96.5 0.0018 6.3E-08 45.5 3.4 26 17-42 22-47 (211)
430 3bk7_A ABC transporter ATP-bin 96.5 0.0015 5.3E-08 53.5 3.2 26 19-44 116-141 (607)
431 1yqt_A RNAse L inhibitor; ATP- 96.5 0.0017 5.8E-08 52.5 3.3 26 20-45 312-337 (538)
432 3ozx_A RNAse L inhibitor; ATP 96.5 0.0017 5.8E-08 52.5 3.2 23 22-44 296-318 (538)
433 3bos_A Putative DNA replicatio 96.5 0.0027 9.4E-08 45.1 4.1 24 19-42 51-74 (242)
434 1svm_A Large T antigen; AAA+ f 96.4 0.0016 5.4E-08 50.2 2.8 25 18-42 167-191 (377)
435 1u0j_A DNA replication protein 96.4 0.0063 2.2E-07 44.5 5.8 37 4-42 90-126 (267)
436 1a7j_A Phosphoribulokinase; tr 96.4 0.0011 3.8E-08 49.3 1.8 24 19-42 4-27 (290)
437 4f4c_A Multidrug resistance pr 96.4 0.0016 5.5E-08 58.0 3.1 26 19-44 1104-1129(1321)
438 3bk7_A ABC transporter ATP-bin 96.4 0.002 6.9E-08 52.8 3.3 25 21-45 383-407 (607)
439 2p65_A Hypothetical protein PF 96.4 0.0018 6.3E-08 44.1 2.6 25 18-42 41-65 (187)
440 1f2t_A RAD50 ABC-ATPase; DNA d 96.4 0.0023 8E-08 42.6 3.1 20 22-41 25-44 (149)
441 4b4t_K 26S protease regulatory 96.3 0.033 1.1E-06 43.7 9.8 25 18-42 204-228 (428)
442 1nlf_A Regulatory protein REPA 96.3 0.002 6.7E-08 47.5 2.8 24 19-42 29-52 (279)
443 1ltq_A Polynucleotide kinase; 96.3 0.0023 7.8E-08 47.6 3.1 22 21-42 3-24 (301)
444 3t15_A Ribulose bisphosphate c 96.3 0.0028 9.7E-08 47.1 3.5 25 18-42 34-58 (293)
445 3j16_B RLI1P; ribosome recycli 96.3 0.0022 7.6E-08 52.5 3.1 24 22-45 380-403 (608)
446 3ake_A Cytidylate kinase; CMP 96.3 0.0026 9.1E-08 44.3 3.1 21 22-42 4-24 (208)
447 4ido_A Atlastin-1; GTPase, GTP 96.3 0.0099 3.4E-07 46.8 6.6 25 17-41 64-88 (457)
448 3n70_A Transport activator; si 96.3 0.0027 9.2E-08 41.9 3.0 26 18-43 22-47 (145)
449 1xwi_A SKD1 protein; VPS4B, AA 96.2 0.13 4.5E-06 38.6 12.4 24 19-42 44-67 (322)
450 2ga8_A Hypothetical 39.9 kDa p 96.2 0.0078 2.7E-07 45.9 5.6 23 19-41 23-45 (359)
451 4fcw_A Chaperone protein CLPB; 96.2 0.0064 2.2E-07 45.2 5.1 22 21-42 48-69 (311)
452 1fnn_A CDC6P, cell division co 96.2 0.0049 1.7E-07 47.2 4.5 21 22-42 46-66 (389)
453 3qf7_A RAD50; ABC-ATPase, ATPa 96.2 0.0028 9.5E-08 48.7 3.1 20 22-41 25-44 (365)
454 3b9p_A CG5977-PA, isoform A; A 96.2 0.0031 1E-07 46.7 3.1 24 19-42 53-76 (297)
455 4b4t_M 26S protease regulatory 96.2 0.045 1.5E-06 42.9 9.7 26 17-42 212-237 (434)
456 4f4c_A Multidrug resistance pr 96.2 0.0057 2E-07 54.6 5.2 26 19-44 443-468 (1321)
457 3h4m_A Proteasome-activating n 96.1 0.0035 1.2E-07 46.1 3.3 26 18-43 49-74 (285)
458 4b4t_J 26S protease regulatory 96.1 0.056 1.9E-06 41.9 10.0 26 17-42 179-204 (405)
459 2qgz_A Helicase loader, putati 96.1 0.0089 3.1E-07 44.7 5.5 23 20-42 152-174 (308)
460 2qz4_A Paraplegin; AAA+, SPG7, 96.1 0.0038 1.3E-07 45.2 3.4 24 19-42 38-61 (262)
461 2chg_A Replication factor C sm 96.1 0.0034 1.2E-07 43.9 3.0 21 22-42 40-60 (226)
462 2dr3_A UPF0273 protein PH0284; 96.1 0.0034 1.2E-07 44.9 3.0 24 18-41 21-44 (247)
463 3g5u_A MCG1178, multidrug resi 96.1 0.0067 2.3E-07 54.0 5.4 25 20-44 416-440 (1284)
464 1pzn_A RAD51, DNA repair and r 96.1 0.003 1E-07 48.2 2.8 27 17-43 128-154 (349)
465 1njg_A DNA polymerase III subu 96.1 0.0054 1.8E-07 43.4 4.1 21 22-42 47-67 (250)
466 3cf0_A Transitional endoplasmi 96.1 0.003 1E-07 47.1 2.8 25 18-42 47-71 (301)
467 4b4t_I 26S protease regulatory 96.1 0.071 2.4E-06 41.7 10.4 26 17-42 213-238 (437)
468 3vfd_A Spastin; ATPase, microt 96.1 0.033 1.1E-06 42.9 8.7 25 19-43 147-171 (389)
469 2iw3_A Elongation factor 3A; a 96.1 0.0034 1.2E-07 54.0 3.3 25 21-45 462-486 (986)
470 2h92_A Cytidylate kinase; ross 96.1 0.0033 1.1E-07 44.4 2.8 23 20-42 3-25 (219)
471 2px0_A Flagellar biosynthesis 96.1 0.0039 1.3E-07 46.4 3.3 23 19-41 104-126 (296)
472 3syl_A Protein CBBX; photosynt 96.1 0.0048 1.6E-07 45.9 3.8 24 18-41 65-88 (309)
473 1l8q_A Chromosomal replication 96.0 0.0033 1.1E-07 47.2 2.8 23 20-42 37-59 (324)
474 3te6_A Regulatory protein SIR3 96.0 0.0046 1.6E-07 46.5 3.5 27 16-42 41-67 (318)
475 2qby_B CDC6 homolog 3, cell di 96.0 0.0089 3E-07 45.7 5.2 25 18-42 43-67 (384)
476 1qhl_A Protein (cell division 96.0 0.00043 1.5E-08 49.6 -2.2 21 23-43 30-50 (227)
477 3exa_A TRNA delta(2)-isopenten 96.0 0.0049 1.7E-07 46.2 3.4 24 20-43 3-26 (322)
478 3d3q_A TRNA delta(2)-isopenten 96.0 0.0041 1.4E-07 47.2 3.0 22 21-42 8-29 (340)
479 2qmh_A HPR kinase/phosphorylas 96.0 0.0047 1.6E-07 43.2 3.0 24 20-43 34-57 (205)
480 1vma_A Cell division protein F 96.0 0.005 1.7E-07 46.1 3.4 23 19-41 103-125 (306)
481 3zvl_A Bifunctional polynucleo 96.0 0.004 1.4E-07 48.7 2.9 24 19-42 257-280 (416)
482 1sxj_E Activator 1 40 kDa subu 95.9 0.0032 1.1E-07 47.8 2.3 21 22-42 38-58 (354)
483 4b4t_H 26S protease regulatory 95.9 0.056 1.9E-06 42.7 9.3 26 17-42 240-265 (467)
484 3cr8_A Sulfate adenylyltranfer 95.9 0.0027 9.2E-08 51.4 1.9 27 17-43 366-392 (552)
485 2iw3_A Elongation factor 3A; a 95.9 0.0023 7.7E-08 55.1 1.5 24 21-44 700-723 (986)
486 1d2n_A N-ethylmaleimide-sensit 95.9 0.0062 2.1E-07 44.5 3.8 26 17-42 61-86 (272)
487 2qby_A CDC6 homolog 1, cell di 95.9 0.0042 1.4E-07 47.4 2.9 25 18-42 43-67 (386)
488 1sxj_C Activator 1 40 kDa subu 95.9 0.0042 1.4E-07 47.0 2.8 22 22-43 48-69 (340)
489 1p5z_B DCK, deoxycytidine kina 95.9 0.0032 1.1E-07 45.9 1.9 26 18-43 22-47 (263)
490 3crm_A TRNA delta(2)-isopenten 95.8 0.0058 2E-07 46.0 3.3 22 21-42 6-27 (323)
491 3co5_A Putative two-component 95.8 0.003 1E-07 41.6 1.5 25 19-43 26-50 (143)
492 2v1u_A Cell division control p 95.8 0.0052 1.8E-07 47.0 3.1 25 18-42 42-66 (387)
493 1tf7_A KAIC; homohexamer, hexa 95.8 0.0045 1.5E-07 49.9 2.8 20 23-42 42-63 (525)
494 2ocp_A DGK, deoxyguanosine kin 95.8 0.0065 2.2E-07 43.6 3.4 24 20-43 2-25 (241)
495 1ofh_A ATP-dependent HSL prote 95.8 0.0053 1.8E-07 45.5 2.9 24 19-42 49-72 (310)
496 1c9k_A COBU, adenosylcobinamid 95.8 0.0062 2.1E-07 41.9 3.0 21 23-43 2-22 (180)
497 3m6a_A ATP-dependent protease 95.8 0.011 3.7E-07 47.9 4.8 24 19-42 107-130 (543)
498 3qks_A DNA double-strand break 95.8 0.0064 2.2E-07 42.6 3.1 20 22-41 25-44 (203)
499 3lda_A DNA repair protein RAD5 95.7 0.006 2E-07 47.4 3.0 25 17-41 175-199 (400)
500 3eie_A Vacuolar protein sortin 95.7 0.008 2.7E-07 45.2 3.6 24 19-42 50-73 (322)
No 1
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=100.00 E-value=8.3e-36 Score=212.51 Aligned_cols=192 Identities=60% Similarity=1.052 Sum_probs=147.1
Q ss_pred cHHHH----HHHHHHHhCCCCcccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCeEEEEEEcCChhhh
Q 029453 2 FLVDW----FYGILVSLGLWQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMA 77 (193)
Q Consensus 2 ~~~~~----~~~~~~~~~~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~ 77 (193)
+|+.| ++..+.......+.++|+++|++|||||||++++.++.+..+.+|.+.....+.+++..+.+|||||++.+
T Consensus 3 ~~~~~~~~~~~~~l~~~~~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~ 82 (198)
T 1f6b_A 3 FIFDWIYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQA 82 (198)
T ss_dssp ----------CHHHHHHTCTTCCEEEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTEEEEEEEECC----
T ss_pred HHHHHHHHHHHHHHHHhhccCCCcEEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECCEEEEEEECCCcHhh
Confidence 56777 66677777788899999999999999999999999988777777888888888899999999999999998
Q ss_pred HHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCc
Q 029453 78 RRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGN 157 (193)
Q Consensus 78 ~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 157 (193)
...+..++..+|++++|+|+++++++.....++..++......+.|+++|+||+|+.+....+++.+.++.......+..
T Consensus 83 ~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 162 (198)
T 1f6b_A 83 RRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGS 162 (198)
T ss_dssp CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSC
T ss_pred HHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccccCCHHHHHHHhCcccccccccc
Confidence 88888899999999999999999999999999998876544468999999999999877777777777765543333333
Q ss_pred ccCCCCCCccEEEEEEeeecCCChhHHHHhhhhhcC
Q 029453 158 VNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYIK 193 (193)
Q Consensus 158 ~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l~ 193 (193)
..+.......+++++|||++|.|++++|++|.+.++
T Consensus 163 ~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~l~ 198 (198)
T 1f6b_A 163 VSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYID 198 (198)
T ss_dssp CCTTTCCSCCEEEEECBTTTTBSHHHHHHHHHTTCC
T ss_pred cccccccCceEEEEEEECCCCCCHHHHHHHHHHhcC
Confidence 223322235679999999999999999999998764
No 2
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=100.00 E-value=1e-34 Score=205.63 Aligned_cols=186 Identities=62% Similarity=1.051 Sum_probs=140.3
Q ss_pred cHHHHHHHHHHHhCCCCcccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCeEEEEEEcCChhhhHHhH
Q 029453 2 FLVDWFYGILVSLGLWQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMARRVW 81 (193)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~ 81 (193)
||+.+++......+...+.++|+++|++|||||||++++.++.+..+.+|.+.....+.+++..+.+|||||++.+...+
T Consensus 5 ~~~~~~~~~l~~~~~~~~~~ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 84 (190)
T 1m2o_B 5 DIFGWFRDVLASLGLWNKHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLW 84 (190)
T ss_dssp -------------------CEEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETTEEEEEEECCCSGGGTTSG
T ss_pred HHHHHHHHHHHHhhccCCccEEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECCEEEEEEECCCCHHHHHHH
Confidence 67788888877777888999999999999999999999999888777788888888888999999999999999998888
Q ss_pred HhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCC
Q 029453 82 KDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLD 161 (193)
Q Consensus 82 ~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (193)
..+++.+|++++|+|+++++++.....++..++......+.|+++|+||+|+......+++.+.++... ...+.. +
T Consensus 85 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~-~~~~~~--~- 160 (190)
T 1m2o_B 85 KDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLN-TTGSQR--I- 160 (190)
T ss_dssp GGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTCSS-CCC-----C-
T ss_pred HHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCCCHHHHHHHhCCcc-cccccc--c-
Confidence 888999999999999999999999999999887654446899999999999987677777777766543 111110 0
Q ss_pred CCCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 162 NTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 162 ~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
.....++++++||++|.|++++|++|.+++
T Consensus 161 -~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~l 190 (190)
T 1m2o_B 161 -EGQRPVEVFMCSVVMRNGYLEAFQWLSQYI 190 (190)
T ss_dssp -CSSCCEEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred -cccceEEEEEeECCcCCCHHHHHHHHHhhC
Confidence 112457899999999999999999998764
No 3
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=100.00 E-value=1.4e-32 Score=189.74 Aligned_cols=160 Identities=31% Similarity=0.586 Sum_probs=137.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCCh
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDK 100 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~ 100 (193)
+||+++|++|||||||++++.++.+....||.+.....+...+..+.+|||||++.+...+..++..+|++++|+|++++
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 80 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 80 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCCEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCG
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCcccCcCceeEEEEEECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEECCCH
Confidence 58999999999999999999988887777888877778888889999999999999999888999999999999999999
Q ss_pred hhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeeecCCC
Q 029453 101 ERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMG 180 (193)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 180 (193)
+++.....++..+.......+.|+++|+||+|+......+++...++..... ...++++++||++|.|
T Consensus 81 ~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~Sa~~~~g 148 (164)
T 1r8s_A 81 ERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR------------HRNWYIQATCATSGDG 148 (164)
T ss_dssp GGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCS------------SCCEEEEECBTTTTBT
T ss_pred HHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCHHHHHHHhCccccc------------CccEEEEEcccCCCcC
Confidence 9999999999888765444689999999999998766666777666544311 1236899999999999
Q ss_pred hhHHHHhhhhhc
Q 029453 181 YGEGFKWLSQYI 192 (193)
Q Consensus 181 i~~~~~~i~~~l 192 (193)
+++++++|.+.+
T Consensus 149 i~~l~~~l~~~i 160 (164)
T 1r8s_A 149 LYEGLDWLSNQL 160 (164)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHH
Confidence 999999998765
No 4
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=100.00 E-value=1.6e-32 Score=192.78 Aligned_cols=164 Identities=35% Similarity=0.622 Sum_probs=139.0
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEe
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLID 96 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 96 (193)
..+.++|+++|++|||||||++++.+..+..+.+|.+.....+.+++..+.+|||||++.+...+..++..+|++++|+|
T Consensus 13 ~~~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d 92 (181)
T 1fzq_A 13 PDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVID 92 (181)
T ss_dssp CSSCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEEEEEEETTEEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCeEEEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEE
Confidence 36889999999999999999999998877666677777777788889999999999999999988999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeee
Q 029453 97 AYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIV 176 (193)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 176 (193)
+++++++.....++..++......+.|+++|+||+|+......+++.+.++..... ...++++++||+
T Consensus 93 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~Sa~ 160 (181)
T 1fzq_A 93 SADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIR------------DRVWQIQSCSAL 160 (181)
T ss_dssp TTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCC------------SSCEEEEECCTT
T ss_pred CcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCHHHHHHHhCchhcc------------CCceEEEEccCC
Confidence 99999999998888888655444689999999999998766666776666543210 134689999999
Q ss_pred cCCChhHHHHhhhhhc
Q 029453 177 RKMGYGEGFKWLSQYI 192 (193)
Q Consensus 177 ~~~gi~~~~~~i~~~l 192 (193)
+|.|++++|++|.+.+
T Consensus 161 ~g~gi~~l~~~l~~~~ 176 (181)
T 1fzq_A 161 TGEGVQDGMNWVCKNV 176 (181)
T ss_dssp TCTTHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999998765
No 5
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=100.00 E-value=1.4e-32 Score=193.70 Aligned_cols=163 Identities=31% Similarity=0.568 Sum_probs=138.4
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeC
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDA 97 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 97 (193)
.+.++|+++|++|||||||++++.++......+|.+.....+.+++..+.+|||||++++...+..+++.+|++++|+|+
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~ 95 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDS 95 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEET
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCCCCcccccCccceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEEC
Confidence 68899999999999999999999988855667788877778888899999999999999998888899999999999999
Q ss_pred CChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeeec
Q 029453 98 YDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVR 177 (193)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 177 (193)
++++++.....++..++......+.|+++|+||+|+......+++.+.+...... ...++++++||++
T Consensus 96 ~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~Sa~~ 163 (186)
T 1ksh_A 96 ADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIR------------SHHWRIQGCSAVT 163 (186)
T ss_dssp TCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCC------------SSCEEEEECCTTT
T ss_pred cCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCHHHHHHHhChhhcc------------CCceEEEEeeCCC
Confidence 9999999999999888765444679999999999998766666776666543210 1346899999999
Q ss_pred CCChhHHHHhhhhhc
Q 029453 178 KMGYGEGFKWLSQYI 192 (193)
Q Consensus 178 ~~gi~~~~~~i~~~l 192 (193)
|.|+++++++|.+.+
T Consensus 164 ~~gi~~l~~~l~~~i 178 (186)
T 1ksh_A 164 GEDLLPGIDWLLDDI 178 (186)
T ss_dssp CTTHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999999998754
No 6
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2e-32 Score=193.12 Aligned_cols=164 Identities=29% Similarity=0.556 Sum_probs=136.6
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEe
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLID 96 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 96 (193)
..+.++|+++|.+|||||||++++.++.+..+.+|.+.....+.+++..+.+|||||++++...+..+++.+|++++|+|
T Consensus 13 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d 92 (187)
T 1zj6_A 13 NHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVD 92 (187)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSCEEEEETTEEEEEEECCC----CGGGHHHHTTCCEEEEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCCcCcCCCccceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEe
Confidence 47889999999999999999999998887777778877778888899999999999999998888889999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeee
Q 029453 97 AYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIV 176 (193)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 176 (193)
+++++++.....++..+.......+.|+++|+||+|+......+++.+.+....+. ...++++++||+
T Consensus 93 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~------------~~~~~~~~~Sa~ 160 (187)
T 1zj6_A 93 STDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIK------------DHQWHIQACCAL 160 (187)
T ss_dssp TTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCC------------SSCEEEEECBTT
T ss_pred CCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHHHHHHhChhhhc------------CCCcEEEEccCC
Confidence 99999999999999988765334689999999999998766677776666543210 134689999999
Q ss_pred cCCChhHHHHhhhhhc
Q 029453 177 RKMGYGEGFKWLSQYI 192 (193)
Q Consensus 177 ~~~gi~~~~~~i~~~l 192 (193)
+|.|+++++++|.+.+
T Consensus 161 ~g~gi~~l~~~l~~~~ 176 (187)
T 1zj6_A 161 TGEGLCQGLEWMMSRL 176 (187)
T ss_dssp TTBTHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHH
Confidence 9999999999998764
No 7
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=100.00 E-value=1.8e-32 Score=194.37 Aligned_cols=165 Identities=32% Similarity=0.581 Sum_probs=136.8
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEE
Q 029453 16 LWQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLI 95 (193)
Q Consensus 16 ~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 95 (193)
...+.+||+++|++|||||||++++.++.+....||.+.....+.+.+..+.+|||||++.+...+..++..+|++++|+
T Consensus 25 ~~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilv~ 104 (192)
T 2b6h_A 25 FGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 104 (192)
T ss_dssp TTTSCEEEEEEESTTSSHHHHHHHHCSSCCEEEEEETTEEEEEEEETTEEEEEEECC-----CTTHHHHHHTCCEEEEEE
T ss_pred ccCCccEEEEECCCCCCHHHHHHHHHhCCccccCCcCceeEEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEE
Confidence 35678999999999999999999999888877777777777778888999999999999999888888999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEee
Q 029453 96 DAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSI 175 (193)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 175 (193)
|+++++++.....++..++......+.|+++|+||+|+.+....+++...++..... ...++++++||
T Consensus 105 D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~------------~~~~~~~~~SA 172 (192)
T 2b6h_A 105 DSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLR------------SRTWYVQATCA 172 (192)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCS------------SCCEEEEECBT
T ss_pred ECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCHHHHHHHhCccccc------------CCceEEEECcC
Confidence 999999999999999988765444689999999999998766667777776654311 13468999999
Q ss_pred ecCCChhHHHHhhhhhc
Q 029453 176 VRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 176 ~~~~gi~~~~~~i~~~l 192 (193)
++|.|+++++++|.+.+
T Consensus 173 ~~g~gi~~l~~~l~~~i 189 (192)
T 2b6h_A 173 TQGTGLYDGLDWLSHEL 189 (192)
T ss_dssp TTTBTHHHHHHHHHHHT
T ss_pred CCcCCHHHHHHHHHHHH
Confidence 99999999999998865
No 8
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=100.00 E-value=3.7e-32 Score=188.72 Aligned_cols=164 Identities=34% Similarity=0.604 Sum_probs=140.6
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEe
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLID 96 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 96 (193)
..+.++|+++|++|||||||++++.++.+....+|.+.....+.+.+..+.+|||||++.+...+..+++.+|++++|+|
T Consensus 4 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d 83 (171)
T 1upt_A 4 MTREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVD 83 (171)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEEEEEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCCCcCCcCccceEEEEECCEEEEEEECCCChhhhHHHHHHhccCCEEEEEEE
Confidence 45679999999999999999999999888777788887778888889999999999999998888889999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeee
Q 029453 97 AYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIV 176 (193)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 176 (193)
+++++++.....++..++......+.|+++|+||+|+......+++...+...... ...++++++||+
T Consensus 84 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~Sa~ 151 (171)
T 1upt_A 84 SCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALK------------DRKWQIFKTSAT 151 (171)
T ss_dssp TTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCT------------TSCEEEEECCTT
T ss_pred CCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCchhcc------------CCceEEEECcCC
Confidence 99999999999999888765444689999999999998766667777666544311 134689999999
Q ss_pred cCCChhHHHHhhhhhc
Q 029453 177 RKMGYGEGFKWLSQYI 192 (193)
Q Consensus 177 ~~~gi~~~~~~i~~~l 192 (193)
+|.|+++++++|.+.+
T Consensus 152 ~~~gi~~l~~~l~~~i 167 (171)
T 1upt_A 152 KGTGLDEAMEWLVETL 167 (171)
T ss_dssp TCTTHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHH
Confidence 9999999999998764
No 9
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=100.00 E-value=4.9e-33 Score=196.50 Aligned_cols=163 Identities=36% Similarity=0.609 Sum_probs=140.4
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeC
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDA 97 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 97 (193)
++.+||+++|++|||||||++++.++.+....+|.+.....+.+++..+.+|||||++.+...+..+++.+|++++|+|+
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~ 99 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVNLETLQYKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDS 99 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEEECSSTTCCEEEEEETTEEEEEEEECCSSSSCCCCSSSSTTCCEEEEEEET
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCCcCCCCceEEEEEEECCEEEEEEECCCCHhHHHHHHHHhhcCCEEEEEEeC
Confidence 68999999999999999999999988887777888887888888999999999999998888888888999999999999
Q ss_pred CChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeeec
Q 029453 98 YDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVR 177 (193)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 177 (193)
++++++.....++..++......+.|+++|+||+|+......+++...+...... ...++++++||++
T Consensus 100 ~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~Sa~~ 167 (189)
T 2x77_A 100 TDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIM------------NRTWTIVKSSSKT 167 (189)
T ss_dssp TCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCC------------SSCEEEEECCTTT
T ss_pred CCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHhChhhcc------------CCceEEEEccCCC
Confidence 9999999999999888776555689999999999998766667777666543311 1346899999999
Q ss_pred CCChhHHHHhhhhhc
Q 029453 178 KMGYGEGFKWLSQYI 192 (193)
Q Consensus 178 ~~gi~~~~~~i~~~l 192 (193)
|.|+++++++|.+.+
T Consensus 168 ~~gi~~l~~~l~~~i 182 (189)
T 2x77_A 168 GDGLVEGMDWLVERL 182 (189)
T ss_dssp CTTHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHH
Confidence 999999999998754
No 10
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=2.1e-32 Score=192.14 Aligned_cols=175 Identities=35% Similarity=0.572 Sum_probs=141.2
Q ss_pred HHHHHHHHhCCCCcccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCeEEEEEEcCChhhhHHhHHhhh
Q 029453 6 WFYGILVSLGLWQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMARRVWKDYY 85 (193)
Q Consensus 6 ~~~~~~~~~~~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~ 85 (193)
+++..+.......+.++|+++|++|||||||++++.++.+....+|.+.....+.+++..+.+|||||++.+...+..++
T Consensus 4 ~~~~~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~ 83 (183)
T 1moz_A 4 IFSSMFDKLWGSNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRCYY 83 (183)
T ss_dssp HHHHHHGGGTTCSSCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCCEEEEEETTEEEEEEEEC----CCTTGGGTT
T ss_pred HHHHHHHHhcCCCCccEEEEECCCCCCHHHHHHHHhcCCcCccCCcCccceEEEEECCEEEEEEECCCCHhHHHHHHHHh
Confidence 44444444322278999999999999999999999988887677788877788888889999999999998888888889
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCC
Q 029453 86 AKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNV 165 (193)
Q Consensus 86 ~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (193)
..+|++++|+|+++++++.....++..+.......+.|+++|+||+|+......+++.+.++..... .
T Consensus 84 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~------------~ 151 (183)
T 1moz_A 84 ADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELK------------D 151 (183)
T ss_dssp TTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCC------------S
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHHhCccccc------------C
Confidence 9999999999999999999999999888765445789999999999998766777777766544310 1
Q ss_pred ccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 166 RPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 166 ~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
..++++++||++|.|+++++++|.+.+
T Consensus 152 ~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 178 (183)
T 1moz_A 152 RSWSIVASSAIKGEGITEGLDWLIDVI 178 (183)
T ss_dssp SCEEEEEEBGGGTBTHHHHHHHHHHHH
T ss_pred CceEEEEccCCCCcCHHHHHHHHHHHH
Confidence 346899999999999999999998764
No 11
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=100.00 E-value=1.1e-31 Score=189.51 Aligned_cols=165 Identities=32% Similarity=0.521 Sum_probs=139.5
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHHhcCCcc-ccCCCCCcceeEEEeCCeEEEEEEcCChhhhHHhHHhhhccCCEEEEE
Q 029453 16 LWQKEAKILFLGLDNSGKTTLLHMLKDERLV-QHQPTQYPTSEELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYL 94 (193)
Q Consensus 16 ~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 94 (193)
..++.+||+++|++|||||||++++.++.+. ...+|.+.....+...+..+.+|||||++++...+..++..+|++++|
T Consensus 18 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v 97 (188)
T 1zd9_A 18 GSKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYM 97 (188)
T ss_dssp -CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEE
T ss_pred CCCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHccCCEEEEE
Confidence 4567899999999999999999999988876 456677777777888899999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEe
Q 029453 95 IDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCS 174 (193)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 174 (193)
+|+++++++.....++..++......+.|+++|+||+|+......+++...++..... ...+.++++|
T Consensus 98 ~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~S 165 (188)
T 1zd9_A 98 VDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQ------------DREICCYSIS 165 (188)
T ss_dssp EETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCC------------SSCEEEEECC
T ss_pred EECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCHHHHHHHhChhhhc------------cCCeeEEEEE
Confidence 9999999999999999888765444689999999999998766666776666543311 1346899999
Q ss_pred eecCCChhHHHHhhhhhc
Q 029453 175 IVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 175 a~~~~gi~~~~~~i~~~l 192 (193)
|++|.|+++++++|.+.+
T Consensus 166 A~~g~gv~~l~~~l~~~~ 183 (188)
T 1zd9_A 166 CKEKDNIDITLQWLIQHS 183 (188)
T ss_dssp TTTCTTHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 999999999999998865
No 12
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=100.00 E-value=5.3e-32 Score=190.07 Aligned_cols=166 Identities=29% Similarity=0.539 Sum_probs=137.6
Q ss_pred CCCCcccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCeEEEEEEcCChhhhHHhHHhhhccCCEEEEE
Q 029453 15 GLWQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYL 94 (193)
Q Consensus 15 ~~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 94 (193)
+...+.+||+++|.+|||||||++++.+..+....+|.+.....+.+++..+.+|||||++++...+..++..+|++++|
T Consensus 16 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v 95 (181)
T 2h17_A 16 PRGSQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVV 95 (181)
T ss_dssp -----CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCSSSSCEEEEETTEEEEEEEESSSGGGTCGGGGGGTTCCEEEEE
T ss_pred CCCCceeEEEEECCCCCCHHHHHHHHhcCCCCccCCcCceeeEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEE
Confidence 34567899999999999999999999999886666777777788888899999999999999988888999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEe
Q 029453 95 IDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCS 174 (193)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 174 (193)
+|+++++++.....++..+.......+.|+++|+||+|+......+++.+.+...... ...+.++++|
T Consensus 96 ~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~------------~~~~~~~~~S 163 (181)
T 2h17_A 96 VDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIK------------DHQWHIQACC 163 (181)
T ss_dssp EETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCC------------SSCEEEEECB
T ss_pred EECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCHHHHHHHhCccccc------------CCceEEEEcc
Confidence 9999999999999999888764334689999999999998766677777666543310 1346899999
Q ss_pred eecCCChhHHHHhhhhhc
Q 029453 175 IVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 175 a~~~~gi~~~~~~i~~~l 192 (193)
|++|.|+++++++|.+.+
T Consensus 164 a~~g~gi~~l~~~l~~~l 181 (181)
T 2h17_A 164 ALTGEGLCQGLEWMMSRL 181 (181)
T ss_dssp TTTTBTHHHHHHHHHTC-
T ss_pred CCCCcCHHHHHHHHHhhC
Confidence 999999999999998754
No 13
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=100.00 E-value=3e-31 Score=187.50 Aligned_cols=165 Identities=32% Similarity=0.558 Sum_probs=136.3
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHHhcCC-cc-ccCCCCCcceeEEEeCCeEEEEEEcCChhhhHHhHHhhhccCCEEEE
Q 029453 16 LWQKEAKILFLGLDNSGKTTLLHMLKDER-LV-QHQPTQYPTSEELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVY 93 (193)
Q Consensus 16 ~~~~~~~i~i~G~~~~GKssl~~~l~~~~-~~-~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 93 (193)
...+.++|+++|.+|||||||++++.+.. +. ...+|.+.....+.+++..+.+|||||++.+...+..++..+|++++
T Consensus 17 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 96 (190)
T 2h57_A 17 RGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIF 96 (190)
T ss_dssp ----CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEEEEEEECSSCEEEEEEECCSTTTGGGGGGGGGGCSEEEE
T ss_pred CCCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccceeEEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEE
Confidence 45678999999999999999999999887 23 45567777777888888999999999999999888899999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhCCCC--CCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEE
Q 029453 94 LIDAYDKERFSESKRELDALLSDEAL--ADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVF 171 (193)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~--~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (193)
|+|+++++++.....++..+...... .+.|+++|+||+|+.+....+++.+.+....+. ...+.++
T Consensus 97 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~------------~~~~~~~ 164 (190)
T 2h57_A 97 VIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIK------------DKPWHIC 164 (190)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHTGGGCC------------SSCEEEE
T ss_pred EEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhChhhcc------------CCceEEE
Confidence 99999999999999999988876544 589999999999998766777776665432210 1346899
Q ss_pred EEeeecCCChhHHHHhhhhhc
Q 029453 172 MCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 172 ~~Sa~~~~gi~~~~~~i~~~l 192 (193)
++||++|.|+++++++|.+.+
T Consensus 165 ~~Sa~~~~gi~~l~~~l~~~i 185 (190)
T 2h57_A 165 ASDAIKGEGLQEGVDWLQDQI 185 (190)
T ss_dssp ECBTTTTBTHHHHHHHHHHHC
T ss_pred EccCCCCcCHHHHHHHHHHHH
Confidence 999999999999999998865
No 14
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.98 E-value=8e-32 Score=193.94 Aligned_cols=159 Identities=19% Similarity=0.241 Sum_probs=120.2
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce--eEEEeC--CeEEEEEEcCChhhhHHhHHhhhccCCE
Q 029453 16 LWQKEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPTS--EELSIG--KIKFKAFDLGGHQMARRVWKDYYAKVDA 90 (193)
Q Consensus 16 ~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 90 (193)
...+++||+++|.+|||||||++++..+.+.. +.+|.+... ..+..+ ...+.+|||+|++++..+...++..+++
T Consensus 9 ~P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~ 88 (216)
T 4dkx_A 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAA 88 (216)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSE
T ss_pred CCCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccE
Confidence 34578999999999999999999999988874 456665443 333443 3678999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC--CCCCHHHHHHhhCCCccccCCCcccCCCCCCccE
Q 029453 91 VVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIP--YAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPL 168 (193)
Q Consensus 91 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (193)
+++|+|++++++|..+..|+..+.... ..+.|+++|+||+|+. +..+.++....... ..+
T Consensus 89 ~ilv~di~~~~Sf~~i~~~~~~i~~~~-~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~-----------------~~~ 150 (216)
T 4dkx_A 89 AVVVYDITNVNSFQQTTKWIDDVRTER-GSDVIIMLVGNKTDLADKRQVSIEEGERKAKE-----------------LNV 150 (216)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHH-TTSSEEEEEEECTTCGGGCCSCHHHHHHHHHH-----------------HTC
T ss_pred EEEEeecchhHHHHHHHHHHHHHHHhc-CCCCeEEEEeeccchHhcCcccHHHHhhHHHH-----------------hCC
Confidence 999999999999999999999886543 3579999999999996 34455443222111 124
Q ss_pred EEEEEeeecCCChhHHHHhhhhhc
Q 029453 169 EVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 169 ~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
.++++||++|.||+++|+.|.+.+
T Consensus 151 ~~~e~SAktg~nV~e~F~~i~~~i 174 (216)
T 4dkx_A 151 MFIETSAKAGYNVKQLFRRVAAAL 174 (216)
T ss_dssp EEEEEBTTTTBSHHHHHHHHHHHC
T ss_pred eeEEEeCCCCcCHHHHHHHHHHHH
Confidence 679999999999999999998765
No 15
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.98 E-value=2.1e-31 Score=189.35 Aligned_cols=166 Identities=32% Similarity=0.587 Sum_probs=136.2
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHHhcCCcccc--CCCCCcceeEEEeCCeEEEEEEcCChhhhHHhHHhhhccCCEEEE
Q 029453 16 LWQKEAKILFLGLDNSGKTTLLHMLKDERLVQH--QPTQYPTSEELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVY 93 (193)
Q Consensus 16 ~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 93 (193)
-..+.++|+++|.+|||||||++++.+..+... .+|.+.....+...+..+.+|||||++.+...+..++..+|++++
T Consensus 13 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 92 (199)
T 4bas_A 13 QSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVETFEKGRVAFTVFDMGGAKKFRGLWETYYDNIDAVIF 92 (199)
T ss_dssp ---CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEE
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHhcCCEEEE
Confidence 355788999999999999999999999887753 678887777888889999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhCCCC-------CCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCc
Q 029453 94 LIDAYDKERFSESKRELDALLSDEAL-------ADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVR 166 (193)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~-------~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (193)
|+|+++++++.....++..++..... .+.|+++|+||+|+......+++...++...+.. ..
T Consensus 93 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~-----------~~ 161 (199)
T 4bas_A 93 VVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMG-----------DH 161 (199)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHT-----------TS
T ss_pred EEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhcc-----------CC
Confidence 99999999999999999888754211 2789999999999987777777777776443100 03
Q ss_pred cEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 167 PLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 167 ~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
.+.++++||++|.|++++|++|.+.+
T Consensus 162 ~~~~~~~Sa~~g~gv~~l~~~l~~~~ 187 (199)
T 4bas_A 162 PFVIFASNGLKGTGVHEGFSWLQETA 187 (199)
T ss_dssp CEEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred eeEEEEeeCCCccCHHHHHHHHHHHH
Confidence 46899999999999999999998754
No 16
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.97 E-value=1.7e-30 Score=198.12 Aligned_cols=163 Identities=32% Similarity=0.593 Sum_probs=138.8
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeC
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDA 97 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 97 (193)
.+.+||+++|.+|||||||++++.+..+....+|.+.....+...+..+.+|||||++.+...+..++..+|++|+|+|+
T Consensus 163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~pT~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D~ 242 (329)
T 3o47_A 163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS 242 (329)
T ss_dssp CCSEEEEEEESTTSSHHHHHHHTCSSCCEEEEEETTEEEEEEEETTEEEEEEECC-----CCSHHHHHTTEEEEEEEEET
T ss_pred cCcceEEEECCCCccHHHHHHHHhCCCCCCcccccceEEEEEecCcEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEEC
Confidence 46679999999999999999999998887777888888888889999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeeec
Q 029453 98 YDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVR 177 (193)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 177 (193)
++++++.....++..++......++|+++|+||+|+......+++...++..... ...++++++||++
T Consensus 243 ~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~~~~------------~~~~~~~~vSAk~ 310 (329)
T 3o47_A 243 NDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR------------HRNWYIQATCATS 310 (329)
T ss_dssp TCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTCTTCC------------SSCEEEEECBTTT
T ss_pred CchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHHHHHHHhchhhhh------------cCCCEEEEEECCC
Confidence 9999999999999888776555689999999999998777777888877765521 1457899999999
Q ss_pred CCChhHHHHhhhhhc
Q 029453 178 KMGYGEGFKWLSQYI 192 (193)
Q Consensus 178 ~~gi~~~~~~i~~~l 192 (193)
|.|++++|++|.+.+
T Consensus 311 g~gi~el~~~l~~~l 325 (329)
T 3o47_A 311 GDGLYEGLDWLSNQL 325 (329)
T ss_dssp TBTHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHH
Confidence 999999999998865
No 17
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.97 E-value=1.4e-29 Score=203.15 Aligned_cols=165 Identities=33% Similarity=0.580 Sum_probs=145.0
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEe
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLID 96 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 96 (193)
..+.+||+++|.+|||||||++++.+..+....+|.+.....+.+.+..+.+|||||++.+...+..+++.+|++|+|+|
T Consensus 319 ~~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~~~~T~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~V~D 398 (497)
T 3lvq_E 319 SNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVD 398 (497)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEEEEEESSSCEEEEEEECCCGGGSGGGGGGGTTCCEEEEEEE
T ss_pred cccceeEEEEcCCCCCHHHHHHHHhcCCCCCcCCccceeEEEEEeCCEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEE
Confidence 45679999999999999999999999998888889999988999999999999999999999988999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeee
Q 029453 97 AYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIV 176 (193)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 176 (193)
+++++++.....++..++......++|+++|+||+|+......+++...++..... ...++++++||+
T Consensus 399 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~SA~ 466 (497)
T 3lvq_E 399 CADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIR------------DRNWYVQPSCAT 466 (497)
T ss_dssp TTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCCCHHHHHHHTTCTTCC------------SSCEEEEECBTT
T ss_pred CcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCCCHHHHHHHhchhhhh------------cCCeEEEEEECC
Confidence 99999999999999999776555689999999999998777777787777655421 145789999999
Q ss_pred cCCChhHHHHhhhhhcC
Q 029453 177 RKMGYGEGFKWLSQYIK 193 (193)
Q Consensus 177 ~~~gi~~~~~~i~~~l~ 193 (193)
+|.|++++|++|.+.++
T Consensus 467 ~g~gi~~l~~~l~~~~~ 483 (497)
T 3lvq_E 467 SGDGLYEGLTWLTSNYK 483 (497)
T ss_dssp TTBTHHHHHHHHHHHCC
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999999988653
No 18
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.97 E-value=2e-29 Score=174.20 Aligned_cols=156 Identities=21% Similarity=0.191 Sum_probs=101.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcce-eEEEeC--CeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEe
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTS-EELSIG--KIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLID 96 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~-~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 96 (193)
.+||+++|++|||||||++++.+.......++.+... ..+... ...+.+||+||++.+...+..++..+|++++|+|
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 81 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYS 81 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC----------CEEEEEEEETTEEEEEEEEECC---------------CCEEEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccceEEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEEE
Confidence 5799999999999999999998777654444433332 233343 3578899999999999888899999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC--CCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEe
Q 029453 97 AYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYA--ASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCS 174 (193)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 174 (193)
+++++++.....|+..+.......+.|+++|+||+|+.+. ...++....... ..++++++|
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~~~S 144 (166)
T 3q72_A 82 VTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVV-----------------FDCKFIETS 144 (166)
T ss_dssp TTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHH-----------------TTCEEEECB
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHH-----------------hCCcEEEec
Confidence 9999999999999999887655678999999999999732 233322221111 124789999
Q ss_pred eecCCChhHHHHhhhhhc
Q 029453 175 IVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 175 a~~~~gi~~~~~~i~~~l 192 (193)
|++|.|++++|++|.+.+
T Consensus 145 a~~~~gi~~l~~~l~~~~ 162 (166)
T 3q72_A 145 AALHHNVQALFEGVVRQI 162 (166)
T ss_dssp GGGTBSHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHH
Confidence 999999999999998765
No 19
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.97 E-value=3e-29 Score=174.63 Aligned_cols=158 Identities=16% Similarity=0.143 Sum_probs=111.9
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcc--eeEEEeCC--eEEEEEEcCChhh--hHHhHHhhhccCCEE
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPT--SEELSIGK--IKFKAFDLGGHQM--ARRVWKDYYAKVDAV 91 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~--~~~~~~~~~~~~d~i 91 (193)
++.+||+++|++|||||||++++.+..+....++.+.+ ...+.+++ ..+.+|||||++. +......++..+|++
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~ 81 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAY 81 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEE
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEE
Confidence 46789999999999999999999998876555544443 34455555 4788999999987 455566778889999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC--CCHHHHHHhhCCCccccCCCcccCCCCCCccEE
Q 029453 92 VYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYA--ASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLE 169 (193)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (193)
++|+|++++.++.....|+..+.......+.|+++|+||+|+... ...++...... . ..++
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~-~----------------~~~~ 144 (175)
T 2nzj_A 82 VIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAV-V----------------FDCK 144 (175)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHH-H----------------HTSE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHH-H----------------cCCe
Confidence 999999999999998888888876544468999999999999743 33333221110 0 1247
Q ss_pred EEEEeeecCCChhHHHHhhhhhc
Q 029453 170 VFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 170 ~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
++++||++|.|++++|++|.+.+
T Consensus 145 ~~~~Sa~~g~gi~~l~~~l~~~~ 167 (175)
T 2nzj_A 145 FIETSATLQHNVAELFEGVVRQL 167 (175)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHHHH
Confidence 89999999999999999998754
No 20
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.97 E-value=8.5e-29 Score=178.02 Aligned_cols=176 Identities=22% Similarity=0.250 Sum_probs=120.4
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeC---CeEEEEEEcCChhhhHH-hHHhhhccCCEEE
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIG---KIKFKAFDLGGHQMARR-VWKDYYAKVDAVV 92 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~---~~~~~~~D~~g~~~~~~-~~~~~~~~~d~ii 92 (193)
..+.+||+++|++|||||||++++.++.+....++.......+.++ +..+.+|||||++.+.. .+..++..+|+++
T Consensus 4 ~~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i 83 (214)
T 2fh5_B 4 KSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVV 83 (214)
T ss_dssp ----CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcceeeEEEEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEEE
Confidence 4578999999999999999999999988776666655555566666 57899999999999887 7788899999999
Q ss_pred EEEeCCChh-hHHHHHHHHHHHHhC--CCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCc---------cccCCCcccC
Q 029453 93 YLIDAYDKE-RFSESKRELDALLSD--EALADVPFLILGNKIDIPYAASEDELRYHMGLTN---------FTTGKGNVNL 160 (193)
Q Consensus 93 ~v~d~~~~~-~~~~~~~~~~~~~~~--~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~---------~~~~~~~~~~ 160 (193)
+|+|+++.. ++.....++..++.. ....+.|+++|+||+|+......++..+.+.... .........+
T Consensus 84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~~~ 163 (214)
T 2fh5_B 84 FVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSST 163 (214)
T ss_dssp EEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC-----------
T ss_pred EEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCCcc
Confidence 999999853 355555555555432 2235789999999999986655544333322100 0000000000
Q ss_pred CC--------CCC-----ccEEEEEEeeecC------CChhHHHHhhhhhc
Q 029453 161 DN--------TNV-----RPLEVFMCSIVRK------MGYGEGFKWLSQYI 192 (193)
Q Consensus 161 ~~--------~~~-----~~~~~~~~Sa~~~------~gi~~~~~~i~~~l 192 (193)
.. .+. ..+.+++|||++| .|++++|++|.+.+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~~ 214 (214)
T 2fh5_B 164 APAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKIA 214 (214)
T ss_dssp -CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHHC
T ss_pred ccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHhC
Confidence 00 011 1678999999999 99999999998753
No 21
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.96 E-value=4.1e-29 Score=172.57 Aligned_cols=158 Identities=18% Similarity=0.241 Sum_probs=122.0
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce-eEEEeC--CeEEEEEEcCChhhhHHhHHhhhccCCEEEEE
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPTS-EELSIG--KIKFKAFDLGGHQMARRVWKDYYAKVDAVVYL 94 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 94 (193)
+.+||+++|++|||||||++++.++.+.. ..+|.+... ..+..+ ...+.+||+||++.+...+..++..+|++++|
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 81 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV 81 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence 57899999999999999999999887653 334443322 223333 46789999999999988888999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEE
Q 029453 95 IDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY--AASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFM 172 (193)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (193)
+|++++.++.....++..+.......+.|+++|+||+|+.. ....++........ ...++++
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~----------------~~~~~~~ 145 (167)
T 1c1y_A 82 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQW----------------CNCAFLE 145 (167)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHT----------------TSCEEEE
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHc----------------cCCcEEE
Confidence 99999999988888888776644446899999999999963 23333333221111 1357899
Q ss_pred EeeecCCChhHHHHhhhhhc
Q 029453 173 CSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 173 ~Sa~~~~gi~~~~~~i~~~l 192 (193)
+||++|.|+++++++|.+.+
T Consensus 146 ~Sa~~~~gi~~l~~~l~~~i 165 (167)
T 1c1y_A 146 SSAKSKINVNEIFYDLVRQI 165 (167)
T ss_dssp CBTTTTBSHHHHHHHHHHHH
T ss_pred ecCCCCCCHHHHHHHHHHHH
Confidence 99999999999999998765
No 22
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.96 E-value=5.9e-29 Score=172.17 Aligned_cols=158 Identities=19% Similarity=0.264 Sum_probs=123.3
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce--eEEEeC--CeEEEEEEcCChhhhHHhHHhhhccCCEE
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPTS--EELSIG--KIKFKAFDLGGHQMARRVWKDYYAKVDAV 91 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~i 91 (193)
..+.+||+++|++|||||||++++.++.+.. ..++.+... ..+... ...+.+||+||++.+...+..++..+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1r2q_A 3 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAA 82 (170)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEE
Confidence 3568999999999999999999999887664 334444332 334444 46899999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhCCCccccCCCcccCCCCCCccEE
Q 029453 92 VYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY--AASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLE 169 (193)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (193)
++|+|++++.++.....|+..+.... ..+.|+++|+||+|+.. ....++....... ..++
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~ 144 (170)
T 1r2q_A 83 IVVYDITNEESFARAKNWVKELQRQA-SPNIVIALSGNKADLANKRAVDFQEAQSYADD-----------------NSLL 144 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHH-----------------TTCE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCccccccCHHHHHHHHHH-----------------cCCe
Confidence 99999999999988888888876542 35799999999999863 2333333322111 1247
Q ss_pred EEEEeeecCCChhHHHHhhhhhc
Q 029453 170 VFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 170 ~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
++++||++|.|+++++++|.+.+
T Consensus 145 ~~~~Sa~~g~gi~~l~~~i~~~~ 167 (170)
T 1r2q_A 145 FMETSAKTSMNVNEIFMAIAKKL 167 (170)
T ss_dssp EEECCTTTCTTHHHHHHHHHHTS
T ss_pred EEEEeCCCCCCHHHHHHHHHHHH
Confidence 89999999999999999998865
No 23
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.96 E-value=4.8e-29 Score=172.21 Aligned_cols=158 Identities=18% Similarity=0.289 Sum_probs=121.0
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce-eEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEEE
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPTS-EELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVVY 93 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 93 (193)
.+.+||+++|++|||||||++++.+..+.. ..+|.+... ..+..++ ..+.+||+||++++...+..++..+|++++
T Consensus 2 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (168)
T 1u8z_A 2 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC 81 (168)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEE
Confidence 357899999999999999999999888653 333433322 3344554 578999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEE
Q 029453 94 LIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY--AASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVF 171 (193)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (193)
|+|+++++++.....|+..+.......+.|+++|+||+|+.. ....++....... ..++++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~ 144 (168)
T 1u8z_A 82 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQ-----------------WNVNYV 144 (168)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHH-----------------HTCEEE
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHH-----------------cCCeEE
Confidence 999999999998888888887654446899999999999963 3333343332211 124789
Q ss_pred EEeeecCCChhHHHHhhhhhc
Q 029453 172 MCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 172 ~~Sa~~~~gi~~~~~~i~~~l 192 (193)
++||++|.|+++++++|.+.+
T Consensus 145 ~~Sa~~~~gi~~l~~~l~~~i 165 (168)
T 1u8z_A 145 ETSAKTRANVDKVFFDLMREI 165 (168)
T ss_dssp ECCTTTCTTHHHHHHHHHHHH
T ss_pred EeCCCCCCCHHHHHHHHHHHH
Confidence 999999999999999998764
No 24
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.96 E-value=5.1e-29 Score=175.50 Aligned_cols=158 Identities=18% Similarity=0.304 Sum_probs=120.1
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCccccC-CCCCc-ceeEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEEE
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQHQ-PTQYP-TSEELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVVY 93 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~-~t~~~-~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 93 (193)
++.+||+++|++|||||||++++.+..+.... +|... ....+..++ ..+.+|||||++.+...+..++..+|++++
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 81 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 81 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence 46799999999999999999999988866433 33322 233444555 457789999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCC-CHHHHHHhhCCCccccCCCcccCCCCCCccEEEEE
Q 029453 94 LIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAA-SEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFM 172 (193)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (193)
|+|++++.++.....|+..+.......+.|+++|+||+|+.... ..++... +... ..+++++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~-~~~~----------------~~~~~~~ 144 (189)
T 4dsu_A 82 VFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQD-LARS----------------YGIPFIE 144 (189)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHH-HHHH----------------HTCCEEE
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHH-HHHH----------------cCCeEEE
Confidence 99999999999999998888775555789999999999997433 3332221 1111 1136799
Q ss_pred EeeecCCChhHHHHhhhhhc
Q 029453 173 CSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 173 ~Sa~~~~gi~~~~~~i~~~l 192 (193)
+||++|.|+++++++|.+.+
T Consensus 145 ~Sa~~g~gi~~l~~~l~~~~ 164 (189)
T 4dsu_A 145 TSAKTRQGVDDAFYTLVREI 164 (189)
T ss_dssp CCTTTCTTHHHHHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHHHHHH
Confidence 99999999999999998754
No 25
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.96 E-value=1e-28 Score=173.84 Aligned_cols=156 Identities=21% Similarity=0.221 Sum_probs=120.7
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcceeEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEE
Q 029453 16 LWQKEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPTSEELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVV 92 (193)
Q Consensus 16 ~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 92 (193)
...+.+||+++|++|||||||++++.++.+.. ..+|.+.....+.+++ ..+.+|||+|++.+. ++..+|+++
T Consensus 16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~i 90 (184)
T 3ihw_A 16 FQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAVV 90 (184)
T ss_dssp CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSEEE
T ss_pred CCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEEEEEEEEECCCChhhh-----eecCCCEEE
Confidence 45688999999999999999999999888764 4445443344566666 567789999998776 567799999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC----CCCCHHHHHHhhCCCccccCCCcccCCCCCCccE
Q 029453 93 YLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIP----YAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPL 168 (193)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (193)
+|+|++++.+++....|+..+.......+.|+++|+||+|+. +....++........ ..+
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~----------------~~~ 154 (184)
T 3ihw_A 91 FVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDL----------------KRC 154 (184)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHT----------------TTC
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHc----------------CCC
Confidence 999999999999999999988765444679999999999984 333333332222111 125
Q ss_pred EEEEEeeecCCChhHHHHhhhhhc
Q 029453 169 EVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 169 ~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
.++++||++|.|++++|++|.+.+
T Consensus 155 ~~~e~Sa~~~~gv~~lf~~l~~~i 178 (184)
T 3ihw_A 155 TYYETCATYGLNVERVFQDVAQKV 178 (184)
T ss_dssp EEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred eEEEecCCCCCCHHHHHHHHHHHH
Confidence 789999999999999999998754
No 26
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.96 E-value=7.7e-29 Score=176.80 Aligned_cols=158 Identities=18% Similarity=0.240 Sum_probs=120.7
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCc--ceeEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEE
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYP--TSEELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAV 91 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~i 91 (193)
..+.+||+++|.+|||||||++++.+..+.. ..+|.+. ....+.+++ ..+.+|||||++++...+..+++.+|++
T Consensus 26 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i 105 (201)
T 2hup_A 26 YDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGA 105 (201)
T ss_dssp CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEE
T ss_pred cccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEE
Confidence 4567999999999999999999999888653 3445443 344556665 6899999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhCCCccccCCCcccCCCCCCccE-
Q 029453 92 VYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY--AASEDELRYHMGLTNFTTGKGNVNLDNTNVRPL- 168 (193)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 168 (193)
++|+|+++++++.....|+..+.... ..+.|+++|+||+|+.. ....++........ .+
T Consensus 106 ilv~D~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~-----------------~~~ 167 (201)
T 2hup_A 106 ILAYDITKRSSFLSVPHWIEDVRKYA-GSNIVQLLIGNKSDLSELREVSLAEAQSLAEHY-----------------DIL 167 (201)
T ss_dssp EEEEETTBHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHT-----------------TCS
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCccccccccCHHHHHHHHHHc-----------------CCC
Confidence 99999999999988888888876532 35799999999999973 33444433322111 13
Q ss_pred EEEEEeeecCCChhHHHHhhhhhc
Q 029453 169 EVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 169 ~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
.++++||++|.|++++|++|.+.+
T Consensus 168 ~~~~~SA~~g~gi~~l~~~l~~~i 191 (201)
T 2hup_A 168 CAIETSAKDSSNVEEAFLRVATEL 191 (201)
T ss_dssp EEEECBTTTTBSHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHH
Confidence 789999999999999999998754
No 27
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.96 E-value=3.4e-29 Score=172.78 Aligned_cols=157 Identities=18% Similarity=0.255 Sum_probs=121.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCc-ceeEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEEEE
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYP-TSEELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVVYL 94 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~-~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 94 (193)
++++|+++|++|||||||++++.++.+.. ..++... ....+..++ ..+.+||+||++.+...+..++..+|++++|
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV 81 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence 57899999999999999999999887664 3334332 234445554 4589999999999998888999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEE
Q 029453 95 IDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY--AASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFM 172 (193)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (193)
+|++++.++.....++..+.......+.|+++|+||+|+.. ....++....... ..+++++
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~~ 144 (167)
T 1kao_A 82 YSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEE-----------------WGCPFME 144 (167)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHH-----------------HTSCEEE
T ss_pred EeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHH-----------------hCCCEEE
Confidence 99999999988888888887655556899999999999863 2233322221110 1136899
Q ss_pred EeeecCCChhHHHHhhhhhc
Q 029453 173 CSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 173 ~Sa~~~~gi~~~~~~i~~~l 192 (193)
+||++|.|+++++++|.+.+
T Consensus 145 ~Sa~~~~gi~~l~~~l~~~~ 164 (167)
T 1kao_A 145 TSAKSKTMVDELFAEIVRQM 164 (167)
T ss_dssp ECTTCHHHHHHHHHHHHHHH
T ss_pred ecCCCCcCHHHHHHHHHHHH
Confidence 99999999999999998764
No 28
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.96 E-value=6.8e-29 Score=173.18 Aligned_cols=161 Identities=19% Similarity=0.258 Sum_probs=122.8
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHHhcCCcc-ccCCCCCcc--eeEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCE
Q 029453 16 LWQKEAKILFLGLDNSGKTTLLHMLKDERLV-QHQPTQYPT--SEELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDA 90 (193)
Q Consensus 16 ~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ 90 (193)
...+.++|+++|++|||||||++++.+..+. ...++.+.. ...+..++ ..+.+||+||++.+...+..+++.+|+
T Consensus 3 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 82 (177)
T 1wms_A 3 GKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDC 82 (177)
T ss_dssp CCEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSE
T ss_pred CccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCE
Confidence 3457899999999999999999999988765 344455443 34455555 589999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhCC---CCCCCcEEEEeeCCCCC-CCCCHHHHHHhhCCCccccCCCcccCCCCCCc
Q 029453 91 VVYLIDAYDKERFSESKRELDALLSDE---ALADVPFLILGNKIDIP-YAASEDELRYHMGLTNFTTGKGNVNLDNTNVR 166 (193)
Q Consensus 91 ii~v~d~~~~~~~~~~~~~~~~~~~~~---~~~~~pviiv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (193)
+++|+|++++.++.....|+..+.... ...+.|+++|+||+|+. +....++........ .
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~----------------~ 146 (177)
T 1wms_A 83 CLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRDN----------------G 146 (177)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHHT----------------T
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHHhc----------------C
Confidence 999999999988888877777765432 22578999999999996 333444433332211 2
Q ss_pred cEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 167 PLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 167 ~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
..+++++||++|.|+++++++|.+.+
T Consensus 147 ~~~~~~~Sa~~~~gi~~l~~~l~~~~ 172 (177)
T 1wms_A 147 DYPYFETSAKDATNVAAAFEEAVRRV 172 (177)
T ss_dssp CCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CceEEEEeCCCCCCHHHHHHHHHHHH
Confidence 24789999999999999999998754
No 29
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.96 E-value=1.6e-28 Score=175.28 Aligned_cols=159 Identities=18% Similarity=0.282 Sum_probs=125.5
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc-eeEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEE
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPT-SEELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVV 92 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~-~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 92 (193)
..+.++|+++|++|||||||++++.+..+.. ..+|.+.. ...+..++ ..+.+|||||++.+...+..++..+|+++
T Consensus 11 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i 90 (206)
T 2bov_A 11 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL 90 (206)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEEE
Confidence 4577999999999999999999999888654 33444332 23445555 47899999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhCCCccccCCCcccCCCCCCccEEE
Q 029453 93 YLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY--AASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEV 170 (193)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (193)
+|+|+++++++.....|+..+.......+.|+++|+||+|+.. ....++....... ..+++
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~ 153 (206)
T 2bov_A 91 CVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQ-----------------WNVNY 153 (206)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHH-----------------HTCEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHH-----------------hCCeE
Confidence 9999999999999988888887655456899999999999963 3334443332211 12478
Q ss_pred EEEeeecCCChhHHHHhhhhhc
Q 029453 171 FMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 171 ~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
+++||++|.|++++|++|.+.+
T Consensus 154 ~~~Sa~~g~gi~~l~~~l~~~i 175 (206)
T 2bov_A 154 VETSAKTRANVDKVFFDLMREI 175 (206)
T ss_dssp EEECTTTCTTHHHHHHHHHHHH
T ss_pred EEEeCCCCCCHHHHHHHHHHHH
Confidence 9999999999999999998754
No 30
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.96 E-value=2e-28 Score=172.83 Aligned_cols=159 Identities=22% Similarity=0.285 Sum_probs=121.7
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCc--ceeEEEeCC--eEEEEEEcCChhhhH-HhHHhhhccCCE
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYP--TSEELSIGK--IKFKAFDLGGHQMAR-RVWKDYYAKVDA 90 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~~~--~~~~~~D~~g~~~~~-~~~~~~~~~~d~ 90 (193)
.++.+||+++|.+|||||||++++.++.+.. ..++.+. ....+..++ ..+.+|||||++.+. ..+..+++.+|+
T Consensus 17 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~ 96 (189)
T 1z06_A 17 RSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHA 96 (189)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCE
Confidence 4578999999999999999999999887763 4444443 334555555 689999999999988 788889999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhCCCccccCCCcccCCCCCCccE
Q 029453 91 VVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY--AASEDELRYHMGLTNFTTGKGNVNLDNTNVRPL 168 (193)
Q Consensus 91 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (193)
+++|+|++++.++.....|+..+.......+.|+++|+||+|+.. ....++....... ..+
T Consensus 97 iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~-----------------~~~ 159 (189)
T 1z06_A 97 VVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADT-----------------HSM 159 (189)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHH-----------------TTC
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHH-----------------cCC
Confidence 999999999999988888888887655456899999999999963 2333332221110 113
Q ss_pred EEEEEeeecC---CChhHHHHhhhhhc
Q 029453 169 EVFMCSIVRK---MGYGEGFKWLSQYI 192 (193)
Q Consensus 169 ~~~~~Sa~~~---~gi~~~~~~i~~~l 192 (193)
+++++||+++ .|++++|++|.+.+
T Consensus 160 ~~~~~Sa~~~~~~~~i~~l~~~l~~~i 186 (189)
T 1z06_A 160 PLFETSAKNPNDNDHVEAIFMTLAHKL 186 (189)
T ss_dssp CEEECCSSSGGGGSCHHHHHHHHC---
T ss_pred EEEEEeCCcCCcccCHHHHHHHHHHHH
Confidence 6899999999 99999999998765
No 31
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.96 E-value=1.2e-28 Score=174.14 Aligned_cols=159 Identities=19% Similarity=0.229 Sum_probs=124.1
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCcc-ccCCCCCccee---EEEeC-----------CeEEEEEEcCChhhhHHhH
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLV-QHQPTQYPTSE---ELSIG-----------KIKFKAFDLGGHQMARRVW 81 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~~---~~~~~-----------~~~~~~~D~~g~~~~~~~~ 81 (193)
..+.+||+++|++|||||||++++.++.+. ...+|.+.... .+... ...+.+|||||++.+...+
T Consensus 8 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~ 87 (195)
T 3bc1_A 8 YDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLT 87 (195)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHH
T ss_pred cceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHH
Confidence 457799999999999999999999988765 33455554332 33443 3589999999999999999
Q ss_pred HhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhCCCccccCCCccc
Q 029453 82 KDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY--AASEDELRYHMGLTNFTTGKGNVN 159 (193)
Q Consensus 82 ~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~ 159 (193)
..+++.+|++++|+|++++.++.....|+..+.......+.|+++|+||+|+.. ....++.......
T Consensus 88 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~----------- 156 (195)
T 3bc1_A 88 TAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEK----------- 156 (195)
T ss_dssp HHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHH-----------
T ss_pred HHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHH-----------
Confidence 999999999999999999999988888888887654446899999999999963 3333333222111
Q ss_pred CCCCCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 160 LDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 160 ~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
..++++++||++|.|+++++++|.+.+
T Consensus 157 ------~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 183 (195)
T 3bc1_A 157 ------YGIPYFETSAANGTNISHAIEMLLDLI 183 (195)
T ss_dssp ------HTCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ------cCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 113679999999999999999998754
No 32
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.96 E-value=2.8e-28 Score=170.64 Aligned_cols=159 Identities=19% Similarity=0.274 Sum_probs=123.5
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHHhcCCcccc-CCCCCcc--eeEEEeC--CeEEEEEEcCChhhhHHhHHhhhccCCE
Q 029453 16 LWQKEAKILFLGLDNSGKTTLLHMLKDERLVQH-QPTQYPT--SEELSIG--KIKFKAFDLGGHQMARRVWKDYYAKVDA 90 (193)
Q Consensus 16 ~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~-~~t~~~~--~~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 90 (193)
...+.+||+++|++|||||||++++.+..+... .++.+.. ...+.+. ...+.+||+||++.+...+..+++.+|+
T Consensus 8 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 87 (181)
T 2efe_B 8 NKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 87 (181)
T ss_dssp --CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSE
T ss_pred CCccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCE
Confidence 356789999999999999999999998887643 3444433 3344444 3589999999999999888999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhCCCccccCCCcccCCCCCCccE
Q 029453 91 VVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY--AASEDELRYHMGLTNFTTGKGNVNLDNTNVRPL 168 (193)
Q Consensus 91 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (193)
+++|+|++++.++.....|+..+.... ..+.|+++|+||+|+.. ....++....... ..+
T Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~ 149 (181)
T 2efe_B 88 AIIVFDVTNQASFERAKKWVQELQAQG-NPNMVMALAGNKSDLLDARKVTAEDAQTYAQE-----------------NGL 149 (181)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHHHHH-----------------TTC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCcccccccCCHHHHHHHHHH-----------------cCC
Confidence 999999999999988888888876542 35799999999999963 2333333332211 124
Q ss_pred EEEEEeeecCCChhHHHHhhhhhc
Q 029453 169 EVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 169 ~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
+++++||++|.|+++++++|.+.+
T Consensus 150 ~~~~~Sa~~g~gi~~l~~~l~~~~ 173 (181)
T 2efe_B 150 FFMETSAKTATNVKEIFYEIARRL 173 (181)
T ss_dssp EEEECCSSSCTTHHHHHHHHHHTC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 789999999999999999998765
No 33
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=1.9e-28 Score=173.42 Aligned_cols=159 Identities=19% Similarity=0.205 Sum_probs=124.2
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHHhcCCcc-ccCCCCCccee--EEEe--CCeEEEEEEcCChhhhHHhHHhhhccCCE
Q 029453 16 LWQKEAKILFLGLDNSGKTTLLHMLKDERLV-QHQPTQYPTSE--ELSI--GKIKFKAFDLGGHQMARRVWKDYYAKVDA 90 (193)
Q Consensus 16 ~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~~--~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 90 (193)
...+.+||+++|++|||||||++++.+..+. ...++.+.... .+.. ....+.+|||||++.+...+..++..+|+
T Consensus 19 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 98 (192)
T 2fg5_A 19 SAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAA 98 (192)
T ss_dssp --CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSE
T ss_pred ccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCE
Confidence 3567899999999999999999999988865 44555554332 2333 34689999999999999988899999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhCCCccccCCCcccCCCCCCccE
Q 029453 91 VVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY--AASEDELRYHMGLTNFTTGKGNVNLDNTNVRPL 168 (193)
Q Consensus 91 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (193)
+++|+|++++.++.....|+..+... ...+.|+++|+||+|+.. ....++....... ..+
T Consensus 99 iilV~d~~~~~s~~~~~~~~~~i~~~-~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~-----------------~~~ 160 (192)
T 2fg5_A 99 AVIVYDITKQDSFYTLKKWVKELKEH-GPENIVMAIAGNKCDLSDIREVPLKDAKEYAES-----------------IGA 160 (192)
T ss_dssp EEEEEETTCTHHHHHHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHT-----------------TTC
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEECcccccccccCHHHHHHHHHH-----------------cCC
Confidence 99999999999998888888877543 235799999999999963 3344443333211 125
Q ss_pred EEEEEeeecCCChhHHHHhhhhhc
Q 029453 169 EVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 169 ~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
+++++||++|.|+++++++|.+.+
T Consensus 161 ~~~~~Sa~~~~gi~~l~~~l~~~i 184 (192)
T 2fg5_A 161 IVVETSAKNAINIEELFQGISRQI 184 (192)
T ss_dssp EEEECBTTTTBSHHHHHHHHHHTC
T ss_pred EEEEEeCCCCcCHHHHHHHHHHHH
Confidence 789999999999999999998765
No 34
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.96 E-value=1.1e-28 Score=173.38 Aligned_cols=160 Identities=18% Similarity=0.280 Sum_probs=124.0
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHHhcCCcccc-CCCCCcc-eeEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEE
Q 029453 16 LWQKEAKILFLGLDNSGKTTLLHMLKDERLVQH-QPTQYPT-SEELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAV 91 (193)
Q Consensus 16 ~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~-~~t~~~~-~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~i 91 (193)
...+.+||+++|++|||||||++++.+..+... .+|.... ...+...+ ..+.+||+||++.+...+..++..+|++
T Consensus 14 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 93 (187)
T 2a9k_A 14 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGF 93 (187)
T ss_dssp ---CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEE
Confidence 345779999999999999999999998886543 3343332 23345554 5789999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhCCCccccCCCcccCCCCCCccEE
Q 029453 92 VYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY--AASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLE 169 (193)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (193)
++|+|+++++++.....|+..+.......+.|+++|+||+|+.. ....++....... ..++
T Consensus 94 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~ 156 (187)
T 2a9k_A 94 LCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQ-----------------WNVN 156 (187)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHH-----------------TTCE
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHH-----------------cCCe
Confidence 99999999999988888888887655445899999999999963 3344443333211 1247
Q ss_pred EEEEeeecCCChhHHHHhhhhhc
Q 029453 170 VFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 170 ~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
++++||++|.|+++++++|.+.+
T Consensus 157 ~~~~Sa~~~~gi~~l~~~l~~~i 179 (187)
T 2a9k_A 157 YVETSAKTRANVDKVFFDLMREI 179 (187)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHHHHH
Confidence 89999999999999999998754
No 35
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.96 E-value=2.3e-28 Score=169.21 Aligned_cols=156 Identities=19% Similarity=0.319 Sum_probs=121.7
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc--eeEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEEE
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPT--SEELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVVY 93 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 93 (193)
+.++|+++|++|||||||++++.+..+.. ..++.+.. ...+..++ ..+.+||+||++.+...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV 81 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence 46899999999999999999999888663 44555533 33444544 589999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC-----CCHHHHHHhhCCCccccCCCcccCCCCCCccE
Q 029453 94 LIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYA-----ASEDELRYHMGLTNFTTGKGNVNLDNTNVRPL 168 (193)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (193)
|+|++++.++.....|+..+.... ..+.|+++|+||+|+... ...++...... . ..+
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~-~----------------~~~ 143 (170)
T 1ek0_A 82 VYDVTKPQSFIKARHWVKELHEQA-SKDIIIALVGNKIDXLQEGGERKVAREEGEKLAE-E----------------KGL 143 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHH-H----------------HTC
T ss_pred EEecCChHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCCccccccccCCCHHHHHHHHH-H----------------cCC
Confidence 999999999988888888876543 357999999999999632 22222211110 0 124
Q ss_pred EEEEEeeecCCChhHHHHhhhhhc
Q 029453 169 EVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 169 ~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
+++++||++|.|++++|++|.+.+
T Consensus 144 ~~~~~Sa~~~~gi~~l~~~l~~~i 167 (170)
T 1ek0_A 144 LFFETSAKTGENVNDVFLGIGEKI 167 (170)
T ss_dssp EEEECCTTTCTTHHHHHHHHHTTS
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHH
Confidence 789999999999999999998765
No 36
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.96 E-value=5.1e-29 Score=174.59 Aligned_cols=158 Identities=18% Similarity=0.210 Sum_probs=121.9
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc-eeEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEEE
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPT-SEELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVVY 93 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~-~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 93 (193)
.+.++|+++|++|||||||++++.++.+.. ..+|.+.. ...+..++ ..+.+|||||++.+...+..++..+|++++
T Consensus 4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~ 83 (181)
T 3t5g_A 4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYIL 83 (181)
T ss_dssp EEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEEE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEEE
Confidence 467899999999999999999999777653 34454433 33445555 567899999999988888888999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEE
Q 029453 94 LIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY--AASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVF 171 (193)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (193)
|+|+++++++.....|+..+.......+.|+++|+||+|+.. ....++........ .++++
T Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~-----------------~~~~~ 146 (181)
T 3t5g_A 84 VYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESW-----------------NAAFL 146 (181)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHT-----------------TCEEE
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHh-----------------CCcEE
Confidence 999999999999999988887766556899999999999963 33333333222111 24789
Q ss_pred EEeeecCCChhHHHHhhhhhc
Q 029453 172 MCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 172 ~~Sa~~~~gi~~~~~~i~~~l 192 (193)
++||++|.|++++|++|.+.+
T Consensus 147 ~~Sa~~~~~v~~l~~~l~~~~ 167 (181)
T 3t5g_A 147 ESSAKENQTAVDVFRRIILEA 167 (181)
T ss_dssp ECCTTSHHHHHHHHHHHHHHH
T ss_pred EEecCCCCCHHHHHHHHHHHH
Confidence 999999999999999998754
No 37
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.96 E-value=1.7e-28 Score=172.50 Aligned_cols=158 Identities=20% Similarity=0.259 Sum_probs=123.1
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCc--ceeEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEE
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYP--TSEELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAV 91 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~i 91 (193)
..+.+||+++|++|||||||++++.+..+.. ..++.+. ....+..++ ..+.+|||||++.+...+..++..+|++
T Consensus 7 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 86 (186)
T 2bme_A 7 YDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGA 86 (186)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEE
Confidence 4577999999999999999999999887663 3444443 234455555 6899999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhCCCccccCCCcccCCCCCCccEE
Q 029453 92 VYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY--AASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLE 169 (193)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (193)
++|+|++++.++.....|+..+.... ..+.|+++|+||+|+.. .....+....... ..++
T Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~ 148 (186)
T 2bme_A 87 LLVYDITSRETYNALTNWLTDARMLA-SQNIVIILCGNKKDLDADREVTFLEASRFAQE-----------------NELM 148 (186)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHH-----------------TTCE
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECcccccccccCHHHHHHHHHH-----------------cCCE
Confidence 99999999999988888887765432 25799999999999963 3333333222111 1257
Q ss_pred EEEEeeecCCChhHHHHhhhhhc
Q 029453 170 VFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 170 ~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
++++||++|.|++++|++|.+.+
T Consensus 149 ~~~~Sa~~~~gi~~l~~~l~~~~ 171 (186)
T 2bme_A 149 FLETSALTGENVEEAFVQCARKI 171 (186)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEecCCCCCCHHHHHHHHHHHH
Confidence 89999999999999999997754
No 38
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.96 E-value=1.2e-28 Score=172.29 Aligned_cols=159 Identities=18% Similarity=0.268 Sum_probs=124.3
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce-eEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEE
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPTS-EELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVV 92 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 92 (193)
..+.++|+++|.+|||||||++++.+..+.. ..+|.+... ..+..++ ..+.+|||||++++...+..++..+|+++
T Consensus 6 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i 85 (181)
T 2fn4_A 6 PSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFL 85 (181)
T ss_dssp SSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEEE
Confidence 4578999999999999999999999887664 334444332 3455554 57889999999999888888999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhCCCccccCCCcccCCCCCCccEEE
Q 029453 93 YLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY--AASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEV 170 (193)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (193)
+|+|+++++++.....|+..++......+.|+++|+||+|+.. ....++....... ..+.+
T Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~-----------------~~~~~ 148 (181)
T 2fn4_A 86 LVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGAS-----------------HHVAY 148 (181)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHH-----------------TTCEE
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHH-----------------cCCeE
Confidence 9999999999999988888886654456899999999999963 2333332221111 12478
Q ss_pred EEEeeecCCChhHHHHhhhhhc
Q 029453 171 FMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 171 ~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
+++||++|.|+++++++|.+.+
T Consensus 149 ~~~Sa~~~~gv~~l~~~l~~~~ 170 (181)
T 2fn4_A 149 FEASAKLRLNVDEAFEQLVRAV 170 (181)
T ss_dssp EECBTTTTBSHHHHHHHHHHHH
T ss_pred EEecCCCCCCHHHHHHHHHHHH
Confidence 9999999999999999998754
No 39
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.96 E-value=6.2e-29 Score=173.80 Aligned_cols=157 Identities=22% Similarity=0.333 Sum_probs=121.7
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCcc-ccCCCCC--cceeEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEE
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLV-QHQPTQY--PTSEELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAV 91 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~-~~~~t~~--~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~i 91 (193)
..+.+||+++|++|||||||++++.+..+. ...++.+ .....+..++ ..+.+|||||++.+...+..++..+|++
T Consensus 6 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 85 (181)
T 3tw8_B 6 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGV 85 (181)
T ss_dssp CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEE
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEE
Confidence 567899999999999999999999988766 3344444 3345556666 6899999999999988888899999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC--CCHHHHHHhhCCCccccCCCcccCCCCCCccEE
Q 029453 92 VYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYA--ASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLE 169 (193)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (193)
++|+|++++.++.....|+..+.... .+.|+++|+||+|+... ....+....... ..++
T Consensus 86 i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~ 146 (181)
T 3tw8_B 86 IVVYDVTSAESFVNVKRWLHEINQNC--DDVCRILVGNKNDDPERKVVETEDAYKFAGQ-----------------MGIQ 146 (181)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHC--TTSEEEEEEECTTCGGGCCSCHHHHHHHHHH-----------------HTCC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECCCCchhcccCHHHHHHHHHH-----------------cCCe
Confidence 99999999999999888888876532 57999999999998732 232222221111 1136
Q ss_pred EEEEeeecCCChhHHHHhhhhhc
Q 029453 170 VFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 170 ~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
++++||++|.|+++++++|.+.+
T Consensus 147 ~~~~Sa~~~~gi~~l~~~l~~~~ 169 (181)
T 3tw8_B 147 LFETSAKENVNVEEMFNCITELV 169 (181)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 79999999999999999998754
No 40
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=1.7e-28 Score=173.74 Aligned_cols=158 Identities=22% Similarity=0.265 Sum_probs=123.4
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCcc-ccCCCCCcc--eeEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEE
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLV-QHQPTQYPT--SEELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVV 92 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 92 (193)
.+.++|+++|++|||||||++++.+..+. ...++.+.. ...+.+.+ ..+.+|||||++.+...+..+++.+|+++
T Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 92 (195)
T 1x3s_A 13 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVI 92 (195)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEE
Confidence 36789999999999999999999988866 344454433 33444443 67999999999999888899999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC-CCHHHHHHhhCCCccccCCCcccCCCCCCccEEEE
Q 029453 93 YLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYA-ASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVF 171 (193)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (193)
+|+|++++.++.....|+..+.......+.|+++|+||+|+... ...++....... ..+.++
T Consensus 93 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~-----------------~~~~~~ 155 (195)
T 1x3s_A 93 LVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARK-----------------HSMLFI 155 (195)
T ss_dssp EEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHHH-----------------TTCEEE
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHHHHH-----------------cCCEEE
Confidence 99999999999888888888865544468999999999999632 333333222211 124789
Q ss_pred EEeeecCCChhHHHHhhhhhc
Q 029453 172 MCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 172 ~~Sa~~~~gi~~~~~~i~~~l 192 (193)
++||++|.|+++++++|.+.+
T Consensus 156 ~~Sa~~~~gi~~l~~~l~~~~ 176 (195)
T 1x3s_A 156 EASAKTCDGVQCAFEELVEKI 176 (195)
T ss_dssp ECCTTTCTTHHHHHHHHHHHH
T ss_pred EecCCCCCCHHHHHHHHHHHH
Confidence 999999999999999998754
No 41
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.96 E-value=4.2e-29 Score=177.06 Aligned_cols=158 Identities=23% Similarity=0.265 Sum_probs=118.8
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccccCC-----------CCCccee-----EEEeCCeEEEEEEcCChhhhHHh
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQP-----------TQYPTSE-----ELSIGKIKFKAFDLGGHQMARRV 80 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~-----------t~~~~~~-----~~~~~~~~~~~~D~~g~~~~~~~ 80 (193)
..+.+||+++|++|||||||++.+.+.....+.+ |.+.... .+......+.+|||||++.+...
T Consensus 11 ~~~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~ 90 (198)
T 3t1o_A 11 REINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNAS 90 (198)
T ss_dssp TEEEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSHH
T ss_pred cccccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHHH
Confidence 4578999999999999999997776544333221 2111111 11123467999999999999999
Q ss_pred HHhhhccCCEEEEEEeCC------ChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccC
Q 029453 81 WKDYYAKVDAVVYLIDAY------DKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTG 154 (193)
Q Consensus 81 ~~~~~~~~d~ii~v~d~~------~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 154 (193)
+..+++.+|++++|+|++ +.+++..+..|+..+ .....+.|+++|+||+|+.+....++..+......
T Consensus 91 ~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~--~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~---- 164 (198)
T 3t1o_A 91 RKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEY--GLTLDDVPIVIQVNKRDLPDALPVEMVRAVVDPEG---- 164 (198)
T ss_dssp HHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHT--TCCTTSSCEEEEEECTTSTTCCCHHHHHHHHCTTC----
T ss_pred HHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhh--ccccCCCCEEEEEEchhcccccCHHHHHHHHHhcC----
Confidence 999999999999999999 455666666666666 23346899999999999987777777666554322
Q ss_pred CCcccCCCCCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 155 KGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
..+++++||++|.|++++|++|.+.+
T Consensus 165 ------------~~~~~~~Sa~~~~gv~~l~~~l~~~i 190 (198)
T 3t1o_A 165 ------------KFPVLEAVATEGKGVFETLKEVSRLV 190 (198)
T ss_dssp ------------CSCEEECBGGGTBTHHHHHHHHHHHH
T ss_pred ------------CceEEEEecCCCcCHHHHHHHHHHHH
Confidence 12789999999999999999998754
No 42
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.96 E-value=1.4e-28 Score=172.65 Aligned_cols=160 Identities=17% Similarity=0.207 Sum_probs=123.9
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc-eeEEEeCCe--EEEEEEcCChhhhHHhHHhhhccCCEE
Q 029453 16 LWQKEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPT-SEELSIGKI--KFKAFDLGGHQMARRVWKDYYAKVDAV 91 (193)
Q Consensus 16 ~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~-~~~~~~~~~--~~~~~D~~g~~~~~~~~~~~~~~~d~i 91 (193)
...+.+||+++|++|||||||++++.+..+.. ..++.+.. ......++. .+.+||+||++.+...+..+++.+|++
T Consensus 14 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 93 (183)
T 3kkq_A 14 ENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGF 93 (183)
T ss_dssp CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEE
T ss_pred cCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEE
Confidence 34578999999999999999999999887663 33444332 334445554 566799999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhCCCccccCCCcccCCCCCCccEE
Q 029453 92 VYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY--AASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLE 169 (193)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (193)
++|+|+++++++.....|+..+.......+.|+++|+||+|+.. ....++....... ..++
T Consensus 94 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~-----------------~~~~ 156 (183)
T 3kkq_A 94 LIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATK-----------------YNIP 156 (183)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHH-----------------HTCC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHH-----------------hCCe
Confidence 99999999999998888888887654456899999999999974 3333332221111 1146
Q ss_pred EEEEeee-cCCChhHHHHhhhhhc
Q 029453 170 VFMCSIV-RKMGYGEGFKWLSQYI 192 (193)
Q Consensus 170 ~~~~Sa~-~~~gi~~~~~~i~~~l 192 (193)
++++||+ +|.|++++|++|.+.+
T Consensus 157 ~~~~Sa~~~~~~v~~l~~~l~~~i 180 (183)
T 3kkq_A 157 YIETSAKDPPLNVDKTFHDLVRVI 180 (183)
T ss_dssp EEEEBCSSSCBSHHHHHHHHHHHH
T ss_pred EEEeccCCCCCCHHHHHHHHHHHH
Confidence 8999999 9999999999998765
No 43
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.96 E-value=3.7e-28 Score=173.02 Aligned_cols=155 Identities=17% Similarity=0.239 Sum_probs=121.7
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce--eEEEeCC-------------------------------
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPTS--EELSIGK------------------------------- 63 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~~------------------------------- 63 (193)
.+.+||+++|++|||||||++++.+..+.. ..+|.+... ..+..++
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHN 84 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccc
Confidence 467999999999999999999999887663 344444332 2333332
Q ss_pred --------eEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC-
Q 029453 64 --------IKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIP- 134 (193)
Q Consensus 64 --------~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~- 134 (193)
..+.+|||||++.+...+..+++.+|++++|+|++++.++.....|+..+... .+.|+++|+||+|+.
T Consensus 85 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~---~~~piilv~NK~D~~~ 161 (208)
T 3clv_A 85 NYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKIS---SNYIIILVANKIDKNK 161 (208)
T ss_dssp CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH---SCCEEEEEEECTTCC-
T ss_pred cccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhh---CCCcEEEEEECCCccc
Confidence 78999999999999998899999999999999999999998888888888654 249999999999943
Q ss_pred CCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 135 YAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
+....+++....... .++++++||++|.|+++++++|.+.+
T Consensus 162 ~~~~~~~~~~~~~~~-----------------~~~~~~~Sa~~~~~i~~l~~~l~~~~ 202 (208)
T 3clv_A 162 FQVDILEVQKYAQDN-----------------NLLFIQTSAKTGTNIKNIFYMLAEEI 202 (208)
T ss_dssp CCSCHHHHHHHHHHT-----------------TCEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHc-----------------CCcEEEEecCCCCCHHHHHHHHHHHH
Confidence 334444444333221 24889999999999999999998754
No 44
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.96 E-value=7.4e-29 Score=173.15 Aligned_cols=159 Identities=18% Similarity=0.222 Sum_probs=121.1
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCcc-ccCCCCC--cceeEEEeCC---eEEEEEEcCChhhhHHhHHhhhccCCE
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLV-QHQPTQY--PTSEELSIGK---IKFKAFDLGGHQMARRVWKDYYAKVDA 90 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~-~~~~t~~--~~~~~~~~~~---~~~~~~D~~g~~~~~~~~~~~~~~~d~ 90 (193)
..+.+||+++|++|||||||++++.+..+. ...+|.+ .....+.+++ ..+.+|||||++.+...+..++..+|+
T Consensus 3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 82 (178)
T 2hxs_A 3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG 82 (178)
T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence 457899999999999999999999988765 3344554 3445566655 789999999999998888999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhCCC-CCCCc-EEEEeeCCCCCC--CCCHHHHHHhhCCCccccCCCcccCCCCCCc
Q 029453 91 VVYLIDAYDKERFSESKRELDALLSDEA-LADVP-FLILGNKIDIPY--AASEDELRYHMGLTNFTTGKGNVNLDNTNVR 166 (193)
Q Consensus 91 ii~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~p-viiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (193)
+++|+|+++++++.....|+..+..... ..+.| +++|+||+|+.. ....++....... .
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~ 145 (178)
T 2hxs_A 83 VLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQE-----------------N 145 (178)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHH-----------------H
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHH-----------------c
Confidence 9999999999988888877777654210 01345 899999999963 2333332222110 1
Q ss_pred cEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 167 PLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 167 ~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
.++++++||++|.|++++|++|.+.+
T Consensus 146 ~~~~~~~Sa~~~~gi~~l~~~l~~~~ 171 (178)
T 2hxs_A 146 GFSSHFVSAKTGDSVFLCFQKVAAEI 171 (178)
T ss_dssp TCEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred CCcEEEEeCCCCCCHHHHHHHHHHHH
Confidence 24789999999999999999998754
No 45
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=6.3e-29 Score=173.81 Aligned_cols=161 Identities=21% Similarity=0.301 Sum_probs=116.5
Q ss_pred hCCCCcccEEEEEcCCCCCHHHHHHHHhcCCcc--ccCCCCCccee--EEEeCC--eEEEEEEcCChhhhHHhHHhhhcc
Q 029453 14 LGLWQKEAKILFLGLDNSGKTTLLHMLKDERLV--QHQPTQYPTSE--ELSIGK--IKFKAFDLGGHQMARRVWKDYYAK 87 (193)
Q Consensus 14 ~~~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~--~~~~t~~~~~~--~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~ 87 (193)
....++.++|+++|++|||||||++++.+..+. ...+|.+.... .+..++ ..+.+|||||++.+...+..++..
T Consensus 4 ~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ 83 (180)
T 2g6b_A 4 VDFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRD 83 (180)
T ss_dssp -CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGG
T ss_pred cccCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccC
Confidence 345678899999999999999999999988875 34455554432 334454 478999999999999888899999
Q ss_pred CCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC--CCHHHHHHhhCCCccccCCCcccCCCCCC
Q 029453 88 VDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYA--ASEDELRYHMGLTNFTTGKGNVNLDNTNV 165 (193)
Q Consensus 88 ~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (193)
+|++++|+|++++.++.....|+..+.... ..+.|+++|+||+|+... ...++.......
T Consensus 84 ~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~----------------- 145 (180)
T 2g6b_A 84 AHALLLLYDVTNKASFDNIQAWLTEIHEYA-QHDVALMLLGNKVDSAHERVVKREDGEKLAKE----------------- 145 (180)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECCSTTSCCCSCHHHHHHHHHH-----------------
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECcccCcccccCHHHHHHHHHH-----------------
Confidence 999999999999998888888887776532 257999999999999742 233332221110
Q ss_pred ccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 166 RPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 166 ~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
..++++++||++|.|+++++++|.+.+
T Consensus 146 ~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 172 (180)
T 2g6b_A 146 YGLPFMETSAKTGLNVDLAFTAIAKEL 172 (180)
T ss_dssp HTCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 113689999999999999999998754
No 46
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.96 E-value=2.3e-28 Score=173.20 Aligned_cols=160 Identities=20% Similarity=0.267 Sum_probs=123.8
Q ss_pred CCCCcccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCc--ceeEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCC
Q 029453 15 GLWQKEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYP--TSEELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVD 89 (193)
Q Consensus 15 ~~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d 89 (193)
+...+.+||+++|++|||||||++++.+..+.. ..++.+. ....+..++ ..+.+||+||++.+...+..+++.+|
T Consensus 11 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 90 (196)
T 3tkl_A 11 PEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAH 90 (196)
T ss_dssp CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCS
T ss_pred cccccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCC
Confidence 344567999999999999999999999888663 3444443 334555665 67999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCC--CHHHHHHhhCCCccccCCCcccCCCCCCcc
Q 029453 90 AVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAA--SEDELRYHMGLTNFTTGKGNVNLDNTNVRP 167 (193)
Q Consensus 90 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (193)
++++|+|++++.++.....|+..+... ...+.|+++|+||+|+.... ...+....... ..
T Consensus 91 ~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~ 152 (196)
T 3tkl_A 91 GIIVVYDVTDQESFNNVKQWLQEIDRY-ASENVNKLLVGNKCDLTTKKVVDYTTAKEFADS-----------------LG 152 (196)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHH-----------------TT
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcccccccccCHHHHHHHHHH-----------------cC
Confidence 999999999999998888888777543 23579999999999997432 22222111111 11
Q ss_pred EEEEEEeeecCCChhHHHHhhhhhc
Q 029453 168 LEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 168 ~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
++++++||++|.|++++|++|.+.+
T Consensus 153 ~~~~~~Sa~~g~gv~~l~~~l~~~i 177 (196)
T 3tkl_A 153 IPFLETSAKNATNVEQSFMTMAAEI 177 (196)
T ss_dssp CCEEEECTTTCTTHHHHHHHHHHHH
T ss_pred CcEEEEeCCCCCCHHHHHHHHHHHH
Confidence 3679999999999999999998754
No 47
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.96 E-value=2.9e-28 Score=168.74 Aligned_cols=158 Identities=21% Similarity=0.224 Sum_probs=122.7
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce--eEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEE
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPTS--EELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAV 91 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~i 91 (193)
..+.+||+++|++|||||||++++.+..+.. ..++.+... ......+ ..+.+|||||++.+...+..++..+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~ 82 (170)
T 1z0j_A 3 ALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAA 82 (170)
T ss_dssp SEEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEE
Confidence 4578999999999999999999999888653 445554332 3344443 6789999999999988888899999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhCCCccccCCCcccCCCCCCccEE
Q 029453 92 VYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY--AASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLE 169 (193)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (193)
++|+|++++.++.....|+..+.. ...++.|+++|+||+|+.. ....++....... ...+
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~l~~-~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~-----------------~~~~ 144 (170)
T 1z0j_A 83 IIVYDITKEETFSTLKNWVRELRQ-HGPPSIVVAIAGNKCDLTDVREVMERDAKDYADS-----------------IHAI 144 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHH-HSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHH-----------------TTCE
T ss_pred EEEEECcCHHHHHHHHHHHHHHHH-hCCCCCcEEEEEECCccccccccCHHHHHHHHHH-----------------cCCE
Confidence 999999999988888888777754 3346799999999999963 2223332222111 1247
Q ss_pred EEEEeeecCCChhHHHHhhhhhc
Q 029453 170 VFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 170 ~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
++++||++|.|+++++++|.+.+
T Consensus 145 ~~~~Sa~~~~~i~~l~~~i~~~i 167 (170)
T 1z0j_A 145 FVETSAKNAININELFIEISRRI 167 (170)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHC
T ss_pred EEEEeCCCCcCHHHHHHHHHHHH
Confidence 89999999999999999998765
No 48
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.96 E-value=2.7e-29 Score=179.07 Aligned_cols=158 Identities=18% Similarity=0.180 Sum_probs=118.8
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCcccc-CCCCCcce-eE--EEeCCeEEEEEEcCChhhhHHhHHhhhccCCEEEE
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQH-QPTQYPTS-EE--LSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVY 93 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~-~~t~~~~~-~~--~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 93 (193)
.+.+||+++|.+|||||||++++.+..+... .+|.+... .. .......+.+|||||++.+...+..++..+|++++
T Consensus 22 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 101 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYVL 101 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEEEE
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEEEE
Confidence 4789999999999999999999998887643 34444322 12 22345788999999999988888889999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEE
Q 029453 94 LIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY--AASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVF 171 (193)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (193)
|+|+++++++.....|+..+.......++|+++|+||+|+.. .....+...... . ..++++
T Consensus 102 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-~----------------~~~~~~ 164 (201)
T 3oes_A 102 VYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAE-S----------------WGATFM 164 (201)
T ss_dssp EEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHH-H----------------HTCEEE
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHH-H----------------hCCeEE
Confidence 999999999999999999987665556899999999999863 223222211111 1 124789
Q ss_pred EEeeecCCChhHHHHhhhhhc
Q 029453 172 MCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 172 ~~Sa~~~~gi~~~~~~i~~~l 192 (193)
++||++|.|++++|++|.+.+
T Consensus 165 ~~Sa~~~~~v~~l~~~l~~~i 185 (201)
T 3oes_A 165 ESSARENQLTQGIFTKVIQEI 185 (201)
T ss_dssp ECCTTCHHHHHHHHHHHHHHH
T ss_pred EEeCCCCCCHHHHHHHHHHHH
Confidence 999999999999999998754
No 49
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.96 E-value=1.4e-28 Score=170.34 Aligned_cols=156 Identities=20% Similarity=0.229 Sum_probs=111.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-cCC--CCCcceeEEEeCC--eEEEEEEcCChhhhHH-hHHhhhccCCEEEE
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDERLVQ-HQP--TQYPTSEELSIGK--IKFKAFDLGGHQMARR-VWKDYYAKVDAVVY 93 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~--t~~~~~~~~~~~~--~~~~~~D~~g~~~~~~-~~~~~~~~~d~ii~ 93 (193)
.+||+++|++|||||||++++.+..... ..+ +.......+..++ ..+.+||+||++.+.. ....++..+|++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 4799999999999999999998766542 222 3333344455554 5788999999988765 55566788999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC--CCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEE
Q 029453 94 LIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIP--YAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVF 171 (193)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (193)
|+|+++++++.....|+..+.......+.|+++|+||+|+. +....++....... ..++++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~ 144 (169)
T 3q85_A 82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGT-----------------LSCKHI 144 (169)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHH-----------------TTCEEE
T ss_pred EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHH-----------------cCCcEE
Confidence 99999999999999999998776554589999999999996 33444333222211 124789
Q ss_pred EEeeecCCChhHHHHhhhhhc
Q 029453 172 MCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 172 ~~Sa~~~~gi~~~~~~i~~~l 192 (193)
++||++|.|++++|++|.+.+
T Consensus 145 ~~Sa~~~~~v~~l~~~l~~~i 165 (169)
T 3q85_A 145 ETSAALHHNTRELFEGAVRQI 165 (169)
T ss_dssp ECBTTTTBSHHHHHHHHHHHH
T ss_pred EecCccCCCHHHHHHHHHHHH
Confidence 999999999999999998765
No 50
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.96 E-value=7.2e-29 Score=175.82 Aligned_cols=166 Identities=18% Similarity=0.188 Sum_probs=118.0
Q ss_pred HHHHHhCCCCcccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce-eEEEeCC--eEEEEEEcCChhhhHHhHHhh
Q 029453 9 GILVSLGLWQKEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPTS-EELSIGK--IKFKAFDLGGHQMARRVWKDY 84 (193)
Q Consensus 9 ~~~~~~~~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~ 84 (193)
..........+.+||+++|.+|||||||++++.++.+.. ..+|.+... ..+..++ ..+.+|||||++.+...+..+
T Consensus 12 ~~~~~~~~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~ 91 (194)
T 3reg_A 12 TGAGKIENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLS 91 (194)
T ss_dssp ---------CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGG
T ss_pred cccccccccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHhHhh
Confidence 344444556688999999999999999999999988753 344544433 2344444 457999999999999988899
Q ss_pred hccCCEEEEEEeCCChhhHHHH-HHHHHHHHhCCCCCCCcEEEEeeCCCCCC----CCCHHHHHHhhCCCccccCCCccc
Q 029453 85 YAKVDAVVYLIDAYDKERFSES-KRELDALLSDEALADVPFLILGNKIDIPY----AASEDELRYHMGLTNFTTGKGNVN 159 (193)
Q Consensus 85 ~~~~d~ii~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~pviiv~nK~Dl~~----~~~~~~~~~~~~~~~~~~~~~~~~ 159 (193)
+..+|++++|+|+++++++... ..|+..+... ..+.|+++|+||+|+.. ....++........
T Consensus 92 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~---------- 159 (194)
T 3reg_A 92 YADSDVVLLCFAVNNRTSFDNISTKWEPEIKHY--IDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKL---------- 159 (194)
T ss_dssp CTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH--CTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHH----------
T ss_pred ccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhc----------
Confidence 9999999999999999999886 4555555322 25799999999999963 23333322211111
Q ss_pred CCCCCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 160 LDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 160 ~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
....++++||++|.|++++|++|.+.+
T Consensus 160 ------~~~~~~~~Sa~~~~gi~~l~~~l~~~i 186 (194)
T 3reg_A 160 ------GCVAYIEASSVAKIGLNEVFEKSVDCI 186 (194)
T ss_dssp ------TCSCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ------CCCEEEEeecCCCCCHHHHHHHHHHHH
Confidence 111379999999999999999998754
No 51
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.96 E-value=2.1e-28 Score=170.83 Aligned_cols=159 Identities=18% Similarity=0.256 Sum_probs=122.4
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCc--ceeEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCE
Q 029453 16 LWQKEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYP--TSEELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDA 90 (193)
Q Consensus 16 ~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ 90 (193)
...++++|+++|++|||||||++++.+..+.. ..++.+. ....+..++ ..+.+|||||++.+...+..++..+|+
T Consensus 10 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 89 (179)
T 2y8e_A 10 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTV 89 (179)
T ss_dssp --CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSE
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCE
Confidence 34577999999999999999999999887663 3444443 334455555 579999999999999888899999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhCCCccccCCCcccCCCCCCccE
Q 029453 91 VVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY--AASEDELRYHMGLTNFTTGKGNVNLDNTNVRPL 168 (193)
Q Consensus 91 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (193)
+++|+|++++.++.....|+..+.... ..+.|+++|+||+|+.. ....++....... ..+
T Consensus 90 ~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~ 151 (179)
T 2y8e_A 90 AVVVYDITNTNSFHQTSKWIDDVRTER-GSDVIIMLVGNKTDLSDKRQVSTEEGERKAKE-----------------LNV 151 (179)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHH-TTSSEEEEEEECGGGGGGCCSCHHHHHHHHHH-----------------HTC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCcccccCcCCHHHHHHHHHH-----------------cCC
Confidence 999999999988888888887775432 25799999999999963 2333333222111 124
Q ss_pred EEEEEeeecCCChhHHHHhhhhhc
Q 029453 169 EVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 169 ~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
+++++||++|.|+++++++|.+.+
T Consensus 152 ~~~~~Sa~~~~~i~~l~~~l~~~~ 175 (179)
T 2y8e_A 152 MFIETSAKAGYNVKQLFRRVAAAL 175 (179)
T ss_dssp EEEEEBTTTTBSHHHHHHHHHHTC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHH
Confidence 789999999999999999998765
No 52
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.96 E-value=8.9e-29 Score=171.05 Aligned_cols=156 Identities=18% Similarity=0.309 Sum_probs=121.3
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc--eeEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEE
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPT--SEELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVV 92 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 92 (193)
.+.+||+++|++|||||||++++.+..+.. ..+|.+.. ...+..++ ..+.+|||||++.+...+..++..+|+++
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 82 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV 82 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence 467999999999999999999999887653 34454433 34445544 58999999999998888888999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhCCCccccCCCcccCCCCCCccEEE
Q 029453 93 YLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY--AASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEV 170 (193)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (193)
+|+|++++.++.....|+..+.... .+.|+++|+||+|+.. ....++....... ..+++
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~ 143 (168)
T 1z2a_A 83 LVFSTTDRESFEAISSWREKVVAEV--GDIPTALVQNKIDLLDDSCIKNEEAEGLAKR-----------------LKLRF 143 (168)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHH--CSCCEEEEEECGGGGGGCSSCHHHHHHHHHH-----------------HTCEE
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccCcccccCHHHHHHHHHH-----------------cCCeE
Confidence 9999999998888888887775533 5789999999999963 3333333222211 12478
Q ss_pred EEEeeecCCChhHHHHhhhhhc
Q 029453 171 FMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 171 ~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
+++||++|.|+++++++|.+.+
T Consensus 144 ~~~Sa~~~~~i~~l~~~l~~~~ 165 (168)
T 1z2a_A 144 YRTSVKEDLNVSEVFKYLAEKH 165 (168)
T ss_dssp EECBTTTTBSSHHHHHHHHHHH
T ss_pred EEEecCCCCCHHHHHHHHHHHH
Confidence 9999999999999999998754
No 53
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.96 E-value=6.8e-28 Score=168.23 Aligned_cols=158 Identities=17% Similarity=0.242 Sum_probs=123.2
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc--eeEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEE
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPT--SEELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAV 91 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~i 91 (193)
..+.++|+++|.+|||||||++++.+..+.. ..++.+.. ...+..++ ..+.+|||||++.+...+..+++.+|++
T Consensus 12 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 91 (179)
T 1z0f_A 12 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGA 91 (179)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCEE
Confidence 4578999999999999999999999888664 33444433 33444544 5789999999999998899999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhCCCccccCCCcccCCCCCCccEE
Q 029453 92 VYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY--AASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLE 169 (193)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (193)
++|+|++++.++.....|+..+.... ..+.|+++|+||+|+.. ....++..+.... ..++
T Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~ 153 (179)
T 1z0f_A 92 LMVYDITRRSTYNHLSSWLTDARNLT-NPNTVIILIGNKADLEAQRDVTYEEAKQFAEE-----------------NGLL 153 (179)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHH-----------------TTCE
T ss_pred EEEEeCcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECcccccccccCHHHHHHHHHH-----------------cCCE
Confidence 99999999998888888887775432 35789999999999963 3333333332211 1247
Q ss_pred EEEEeeecCCChhHHHHhhhhhc
Q 029453 170 VFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 170 ~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
++++||++|.|++++|++|.+.+
T Consensus 154 ~~~~Sa~~~~gi~~l~~~l~~~i 176 (179)
T 1z0f_A 154 FLEASAKTGENVEDAFLEAAKKI 176 (179)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHHH
Confidence 89999999999999999998765
No 54
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.96 E-value=1.3e-28 Score=177.34 Aligned_cols=160 Identities=18% Similarity=0.258 Sum_probs=121.2
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc--eeEEEeC------------CeEEEEEEcCChhhhHHh
Q 029453 16 LWQKEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPT--SEELSIG------------KIKFKAFDLGGHQMARRV 80 (193)
Q Consensus 16 ~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~------------~~~~~~~D~~g~~~~~~~ 80 (193)
...+.+||+++|++|||||||++++.+..+.. ..+|.+.. ...+.+. ...+.+|||||++.+...
T Consensus 21 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~ 100 (217)
T 2f7s_A 21 DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSL 100 (217)
T ss_dssp CCSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHH
T ss_pred CcceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhH
Confidence 35678999999999999999999999887653 23333322 2223332 467999999999999999
Q ss_pred HHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhCCCccccCCCcc
Q 029453 81 WKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY--AASEDELRYHMGLTNFTTGKGNV 158 (193)
Q Consensus 81 ~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~ 158 (193)
+..++..+|++++|+|++++.++.....|+..+.......+.|+++|+||+|+.. ....++.......
T Consensus 101 ~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~---------- 170 (217)
T 2f7s_A 101 TTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADK---------- 170 (217)
T ss_dssp HHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHH----------
T ss_pred HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHH----------
Confidence 9999999999999999999998888888877765433336799999999999963 2333332222111
Q ss_pred cCCCCCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 159 NLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 159 ~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
..++++++||++|.|+++++++|.+.+
T Consensus 171 -------~~~~~~~~Sa~~g~gi~~l~~~l~~~i 197 (217)
T 2f7s_A 171 -------YGIPYFETSAATGQNVEKAVETLLDLI 197 (217)
T ss_dssp -------TTCCEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred -------CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 113689999999999999999998754
No 55
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.96 E-value=3.9e-28 Score=171.87 Aligned_cols=158 Identities=20% Similarity=0.283 Sum_probs=122.6
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce--eEEEeC--CeEEEEEEcCChhhhHHhHHhhhccCCEE
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPTS--EELSIG--KIKFKAFDLGGHQMARRVWKDYYAKVDAV 91 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~i 91 (193)
..+.+||+++|++|||||||++++.+..+.. ..++.+... ..+..+ ...+.+|||||++.+...+..++..+|++
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~v 101 (193)
T 2oil_A 22 YNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGA 101 (193)
T ss_dssp CSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEE
Confidence 4577999999999999999999999888763 334444332 333333 46789999999999988889999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhCCCccccCCCcccCCCCCCccEE
Q 029453 92 VYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY--AASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLE 169 (193)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (193)
++|+|++++.++.....|+..+... ...+.|+++|+||+|+.. ....++....... ..+.
T Consensus 102 i~v~D~~~~~s~~~~~~~l~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~ 163 (193)
T 2oil_A 102 LLVFDLTKHQTYAVVERWLKELYDH-AEATIVVMLVGNKSDLSQAREVPTEEARMFAEN-----------------NGLL 163 (193)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHTT-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHH-----------------TTCE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHh-cCCCCeEEEEEECCCcccccccCHHHHHHHHHH-----------------cCCE
Confidence 9999999999888888888887643 345799999999999973 2333333222211 1247
Q ss_pred EEEEeeecCCChhHHHHhhhhhc
Q 029453 170 VFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 170 ~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
++++||++|.|+++++++|.+.+
T Consensus 164 ~~~~Sa~~~~gi~~l~~~l~~~i 186 (193)
T 2oil_A 164 FLETSALDSTNVELAFETVLKEI 186 (193)
T ss_dssp EEEECTTTCTTHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHHH
Confidence 89999999999999999998754
No 56
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.96 E-value=7.1e-28 Score=171.80 Aligned_cols=158 Identities=21% Similarity=0.293 Sum_probs=121.9
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce--eEEEeC--CeEEEEEEcCChhhhHHhHHhhhccCCEE
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPTS--EELSIG--KIKFKAFDLGGHQMARRVWKDYYAKVDAV 91 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~i 91 (193)
....+||+++|++|||||||++++.+..+.. ..++.+... ..+... ...+.+|||||++.+...+..++..+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 84 (203)
T 1zbd_A 5 FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGF 84 (203)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEE
T ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEE
Confidence 4567899999999999999999999988753 344554332 334444 36899999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC--CCHHHHHHhhCCCccccCCCcccCCCCCCccEE
Q 029453 92 VYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYA--ASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLE 169 (193)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (193)
++|+|++++.++.....|+..+... ...+.|+++|+||+|+... ...++...... . ..++
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-~----------------~~~~ 146 (203)
T 1zbd_A 85 ILMYDITNEESFNAVQDWSTQIKTY-SWDNAQVLLVGNKCDMEDERVVSSERGRQLAD-H----------------LGFE 146 (203)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHH-SCSSCEEEEEEECTTCTTSCCSCHHHHHHHHH-H----------------HTCE
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcccCcccccCHHHHHHHHH-H----------------CCCe
Confidence 9999999999998888888777543 2357899999999999742 23322222111 0 1147
Q ss_pred EEEEeeecCCChhHHHHhhhhhc
Q 029453 170 VFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 170 ~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
++++||++|.|++++|++|.+.+
T Consensus 147 ~~~~Sa~~~~gi~~l~~~l~~~i 169 (203)
T 1zbd_A 147 FFEASAKDNINVKQTFERLVDVI 169 (203)
T ss_dssp EEECBTTTTBSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 89999999999999999998754
No 57
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.96 E-value=2.2e-28 Score=174.29 Aligned_cols=158 Identities=20% Similarity=0.246 Sum_probs=117.5
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCc--ceeEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEE
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYP--TSEELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAV 91 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~i 91 (193)
..+.+||+++|++|||||||++++.++.+.. ..++.+. ....+..++ ..+.+|||||++.+...+..+++.+|++
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~ 101 (200)
T 2o52_A 22 SDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGA 101 (200)
T ss_dssp CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEE
Confidence 4578999999999999999999999887653 3344432 334555555 6899999999999888888899999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhCCCccccCCCcccCCCCCCccEE
Q 029453 92 VYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY--AASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLE 169 (193)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (193)
++|+|++++.++.....|+..+.... ..+.|+++|+||+|+.. .....+....... ..+.
T Consensus 102 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~-----------------~~~~ 163 (200)
T 2o52_A 102 LLVYDITSRETYNSLAAWLTDARTLA-SPNIVVILCGNKKDLDPEREVTFLEASRFAQE-----------------NELM 163 (200)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHT-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHH-----------------TTCE
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCCcccccccCHHHHHHHHHH-----------------cCCE
Confidence 99999999999988888888775432 25799999999999963 3333333222111 1257
Q ss_pred EEEEeeecCCChhHHHHhhhhhc
Q 029453 170 VFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 170 ~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
++++||++|.|++++|++|.+.+
T Consensus 164 ~~~~SA~~g~gi~~l~~~l~~~i 186 (200)
T 2o52_A 164 FLETSALTGENVEEAFLKCARTI 186 (200)
T ss_dssp EEEECTTTCTTHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHHH
Confidence 89999999999999999998754
No 58
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.96 E-value=1.5e-28 Score=170.34 Aligned_cols=158 Identities=22% Similarity=0.268 Sum_probs=114.9
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce--eEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEE
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPTS--EELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAV 91 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~i 91 (193)
..+.+||+++|++|||||||++++.+..+.. ..++.+... ..+..++ ..+.+||+||++.+...+..+++.+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1z08_A 3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGA 82 (170)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEE
Confidence 4578999999999999999999999887653 445555433 3444443 5789999999999888888889999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhCCCccccCCCcccCCCCCCccEE
Q 029453 92 VYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY--AASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLE 169 (193)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (193)
++|+|++++.++.....|+..+... ...+.|+++|+||+|+.. ....++....... ..++
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~ 144 (170)
T 1z08_A 83 ILVYDITDEDSFQKVKNWVKELRKM-LGNEICLCIVGNKIDLEKERHVSIQEAESYAES-----------------VGAK 144 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHH-HGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHH-----------------TTCE
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHh-cCCCCeEEEEEECcccccccccCHHHHHHHHHH-----------------cCCe
Confidence 9999999999888888887776432 124789999999999963 3333333322111 1247
Q ss_pred EEEEeeecCCChhHHHHhhhhhc
Q 029453 170 VFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 170 ~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
++++||++|.|+++++++|.+.+
T Consensus 145 ~~~~Sa~~~~gi~~l~~~l~~~~ 167 (170)
T 1z08_A 145 HYHTSAKQNKGIEELFLDLCKRM 167 (170)
T ss_dssp EEEEBTTTTBSHHHHHHHHHHHH
T ss_pred EEEecCCCCCCHHHHHHHHHHHH
Confidence 89999999999999999998764
No 59
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=7.6e-29 Score=175.33 Aligned_cols=158 Identities=17% Similarity=0.284 Sum_probs=121.6
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc--eeEEEe--CCeEEEEEEcCChhhhHHhHHhhhccCCEE
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPT--SEELSI--GKIKFKAFDLGGHQMARRVWKDYYAKVDAV 91 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~i 91 (193)
..+.+||+++|.+|||||||++++.+..+.. ..++.+.. ...+.. ....+.+||+||++.+...+..++..+|++
T Consensus 20 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 99 (191)
T 3dz8_A 20 FDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGF 99 (191)
T ss_dssp EEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEE
T ss_pred cCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEE
Confidence 4477899999999999999999999877653 33333332 233333 457899999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhCCCccccCCCcccCCCCCCccEE
Q 029453 92 VYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY--AASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLE 169 (193)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (193)
++|+|+++++++.....|+..+.. ....+.|+++|+||+|+.. ....++....... ..++
T Consensus 100 i~v~d~~~~~s~~~~~~~~~~i~~-~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~ 161 (191)
T 3dz8_A 100 ILMYDITNEESFNAVQDWATQIKT-YSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQ-----------------LGFD 161 (191)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHH-HSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHH-----------------HTCE
T ss_pred EEEEECcCHHHHHHHHHHHHHHHH-hcCCCCCEEEEEECCCCccccccCHHHHHHHHHH-----------------cCCe
Confidence 999999999999888888877754 3345899999999999863 2333322211111 1247
Q ss_pred EEEEeeecCCChhHHHHhhhhhc
Q 029453 170 VFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 170 ~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
++++||++|.|++++|++|.+.+
T Consensus 162 ~~~~Sa~~~~gi~~l~~~l~~~i 184 (191)
T 3dz8_A 162 FFEASAKENISVRQAFERLVDAI 184 (191)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 89999999999999999998754
No 60
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=3.4e-28 Score=173.50 Aligned_cols=158 Identities=20% Similarity=0.224 Sum_probs=122.6
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc--eeEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEE
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPT--SEELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAV 91 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~i 91 (193)
..+.+||+++|++|||||||++++.++.+.. ..+|.+.. ...+.+++ ..+.+|||||++.+...+..++..+|++
T Consensus 23 ~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~ 102 (201)
T 2ew1_A 23 YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANAL 102 (201)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEE
T ss_pred cccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEE
Confidence 4577999999999999999999999887663 44454433 33455555 5789999999999999888999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhCCCccccCCCcccCCCCCCccEE
Q 029453 92 VYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY--AASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLE 169 (193)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (193)
++|+|++++.++.....|+..+... ...+.|+++|+||+|+.. ....++...... . ..++
T Consensus 103 i~v~D~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~-~----------------~~~~ 164 (201)
T 2ew1_A 103 ILTYDITCEESFRCLPEWLREIEQY-ASNKVITVLVGNKIDLAERREVSQQRAEEFSE-A----------------QDMY 164 (201)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCSSCHHHHHHHHH-H----------------HTCC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECCCCccccccCHHHHHHHHH-H----------------cCCE
Confidence 9999999999998888888777543 235789999999999963 333333322111 0 1246
Q ss_pred EEEEeeecCCChhHHHHhhhhhc
Q 029453 170 VFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 170 ~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
++++||++|.|++++|++|.+.+
T Consensus 165 ~~~~Sa~~g~gv~~l~~~l~~~i 187 (201)
T 2ew1_A 165 YLETSAKESDNVEKLFLDLACRL 187 (201)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHHH
Confidence 89999999999999999997654
No 61
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.96 E-value=3.7e-28 Score=171.79 Aligned_cols=158 Identities=20% Similarity=0.259 Sum_probs=121.4
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCc--ceeEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEE
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYP--TSEELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAV 91 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~i 91 (193)
..+.+||+++|++|||||||++++.+..+.. ..++.+. ....+..++ ..+.+|||||++.+...+..+++.+|++
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 97 (191)
T 2a5j_A 18 GSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGA 97 (191)
T ss_dssp TCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEE
Confidence 4578899999999999999999999888763 3344443 334555555 5899999999999988888899999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhCCCccccCCCcccCCCCCCccEE
Q 029453 92 VYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY--AASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLE 169 (193)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (193)
++|+|+++++++.....|+..+... ...+.|+++|+||+|+.. ....++....... ..+.
T Consensus 98 i~v~d~~~~~s~~~~~~~l~~i~~~-~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~-----------------~~~~ 159 (191)
T 2a5j_A 98 LLVYDITRRETFNHLTSWLEDARQH-SSSNMVIMLIGNKSDLESRRDVKREEGEAFARE-----------------HGLI 159 (191)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHH-----------------HTCE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcccCCccccCHHHHHHHHHH-----------------cCCE
Confidence 9999999999998888888877643 235799999999999963 3333333222111 1247
Q ss_pred EEEEeeecCCChhHHHHhhhhhc
Q 029453 170 VFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 170 ~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
++++||++|.|++++|++|.+.+
T Consensus 160 ~~~~Sa~~~~gi~~l~~~l~~~i 182 (191)
T 2a5j_A 160 FMETSAKTACNVEEAFINTAKEI 182 (191)
T ss_dssp EEEECTTTCTTHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHHH
Confidence 89999999999999999997754
No 62
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.96 E-value=6.7e-28 Score=168.42 Aligned_cols=154 Identities=16% Similarity=0.191 Sum_probs=115.6
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcc-eeEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEEEE
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPT-SEELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVVYL 94 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~-~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 94 (193)
.+.+||+++|++|||||||++++.++.+..+.+|.+.. ...+..++ ..+.+|||||+++ ..+++.+|++++|
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~ilv 79 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVIFV 79 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCCCSSCSSSEEEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEEEE
Confidence 47899999999999999999999998887666665543 23445554 5688999999986 3456789999999
Q ss_pred EeCCChhhHHHHHHHHHHHHh--CCCCCCCcEEEEeeCCCCC----CCCCHHHHHHhhCCCccccCCCcccCCCCCCccE
Q 029453 95 IDAYDKERFSESKRELDALLS--DEALADVPFLILGNKIDIP----YAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPL 168 (193)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~--~~~~~~~pviiv~nK~Dl~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (193)
+|+++++++.....|+..+.. .....+.|+++|+||+|+. +....++....... . ..+
T Consensus 80 ~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~-~---------------~~~ 143 (178)
T 2iwr_A 80 FSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXAD-M---------------KRC 143 (178)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHH-H---------------SSE
T ss_pred EECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHh-h---------------cCC
Confidence 999999999888886544322 2233579999999999994 23333333322111 0 236
Q ss_pred EEEEEeeecCCChhHHHHhhhhhc
Q 029453 169 EVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 169 ~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
+++++||++|.|++++|++|.+.+
T Consensus 144 ~~~~~Sa~~~~~i~~lf~~l~~~~ 167 (178)
T 2iwr_A 144 SYYETXATYGLNVDRVFQEVAQKV 167 (178)
T ss_dssp EEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred eEEEEeccccCCHHHHHHHHHHHH
Confidence 899999999999999999998754
No 63
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.96 E-value=6.3e-28 Score=171.33 Aligned_cols=161 Identities=20% Similarity=0.238 Sum_probs=117.4
Q ss_pred CCCCcccEEEEEcCCCCCHHHHHHHHhcCCcc-ccCCCCC--cceeEEEeCC--eEEEEEEcCChhhhHH-hHHhhhccC
Q 029453 15 GLWQKEAKILFLGLDNSGKTTLLHMLKDERLV-QHQPTQY--PTSEELSIGK--IKFKAFDLGGHQMARR-VWKDYYAKV 88 (193)
Q Consensus 15 ~~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~-~~~~t~~--~~~~~~~~~~--~~~~~~D~~g~~~~~~-~~~~~~~~~ 88 (193)
+.....+||+++|.+|||||||++++.+.... ...++.. .....+.+++ ..+.+|||+|++.+.. +...++..+
T Consensus 18 ~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~ 97 (195)
T 3cbq_A 18 GQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTG 97 (195)
T ss_dssp ----CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHC
T ss_pred CCCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccC
Confidence 34557899999999999999999999754332 2223222 2234445554 5678999999987654 667778899
Q ss_pred CEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhCCCccccCCCcccCCCCCCc
Q 029453 89 DAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY--AASEDELRYHMGLTNFTTGKGNVNLDNTNVR 166 (193)
Q Consensus 89 d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (193)
|++++|+|+++++++..+..|+..+.......+.|+++|+||+|+.. ....++....... .
T Consensus 98 d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~-----------------~ 160 (195)
T 3cbq_A 98 DAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGT-----------------L 160 (195)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHH-----------------T
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHH-----------------h
Confidence 99999999999999999999998886544335799999999999973 2333333221110 1
Q ss_pred cEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 167 PLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 167 ~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
.++++++||++|.|++++|++|.+.+
T Consensus 161 ~~~~~e~Sa~~~~~v~~lf~~l~~~i 186 (195)
T 3cbq_A 161 SCKHIETSAALHHNTRELFEGAVRQI 186 (195)
T ss_dssp TCEEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCCHHHHHHHHHHHH
Confidence 14789999999999999999998754
No 64
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.96 E-value=5.3e-28 Score=169.22 Aligned_cols=160 Identities=22% Similarity=0.330 Sum_probs=110.6
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCc--ceeEEEeC---CeEEEEEEcCChhhhHHhHHhhhccCCE
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYP--TSEELSIG---KIKFKAFDLGGHQMARRVWKDYYAKVDA 90 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~~---~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 90 (193)
..+.++|+++|++|||||||++++.+..+.. ..++.+. ....+..+ ...+.+||+||++.+...+..++..+|+
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 84 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADC 84 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCE
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCE
Confidence 4578999999999999999999999887653 3444433 33344443 3689999999999999888889999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhCC---CCCCCcEEEEeeCCCCCC---CCCHHHHHHhhCCCccccCCCcccCCCCC
Q 029453 91 VVYLIDAYDKERFSESKRELDALLSDE---ALADVPFLILGNKIDIPY---AASEDELRYHMGLTNFTTGKGNVNLDNTN 164 (193)
Q Consensus 91 ii~v~d~~~~~~~~~~~~~~~~~~~~~---~~~~~pviiv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (193)
+++|+|++++.++.....|+..+.... ...+.|+++|+||+|+.. ....++....... .
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~-~-------------- 149 (182)
T 1ky3_A 85 CVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKS-L-------------- 149 (182)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHH-T--------------
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHh-c--------------
Confidence 999999999998888888887775432 225789999999999952 2233333222210 1
Q ss_pred CccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 165 VRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 165 ~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
...+++++||++|.|+++++++|.+.+
T Consensus 150 -~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 176 (182)
T 1ky3_A 150 -GDIPLFLTSAKNAINVDTAFEEIARSA 176 (182)
T ss_dssp -TSCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred -CCCeEEEEecCCCCCHHHHHHHHHHHH
Confidence 224689999999999999999998754
No 65
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.96 E-value=9e-29 Score=173.60 Aligned_cols=158 Identities=20% Similarity=0.267 Sum_probs=95.4
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCc--ceeEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEE
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYP--TSEELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAV 91 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~i 91 (193)
..+.++|+++|++|||||||++++.+..+.. ..+|.+. ....+.+++ ..+.+|||||++.+...+..+++.+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 84 (183)
T 2fu5_C 5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 84 (183)
T ss_dssp CSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEE
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEE
Confidence 4567999999999999999999999877653 3344432 334555665 7899999999999888888889999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhCCCccccCCCcccCCCCCCccEE
Q 029453 92 VYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY--AASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLE 169 (193)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (193)
++|+|++++.++.....|+..+... ...+.|+++|+||+|+.. ....++....... ..++
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~-----------------~~~~ 146 (183)
T 2fu5_C 85 MLVYDITNEKSFDNIRNWIRNIEEH-ASADVEKMILGNKCDVNDKRQVSKERGEKLALD-----------------YGIK 146 (183)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHH-----------------HTCE
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECccCCccCcCCHHHHHHHHHH-----------------cCCe
Confidence 9999999999998888888877643 235799999999999974 2333333222110 1247
Q ss_pred EEEEeeecCCChhHHHHhhhhhc
Q 029453 170 VFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 170 ~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
++++||++|.|++++|++|.+.+
T Consensus 147 ~~~~Sa~~~~~i~~l~~~l~~~i 169 (183)
T 2fu5_C 147 FMETSAKANINVENAFFTLARDI 169 (183)
T ss_dssp EEECCC---CCHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHHH
Confidence 89999999999999999998754
No 66
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.96 E-value=2.8e-28 Score=172.67 Aligned_cols=160 Identities=18% Similarity=0.268 Sum_probs=119.1
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCc--ceeEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCE
Q 029453 16 LWQKEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYP--TSEELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDA 90 (193)
Q Consensus 16 ~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ 90 (193)
.....+||+++|.+|||||||++++.+..+.. ..++.+. ....+.+++ ..+.+|||||++.+...+..++..+|+
T Consensus 22 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ 101 (192)
T 2il1_A 22 PADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKG 101 (192)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSE
T ss_pred ccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCE
Confidence 35578999999999999999999999887653 3444443 334455555 578999999999999989999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhCCCccccCCCcccCCCCCCccE
Q 029453 91 VVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY--AASEDELRYHMGLTNFTTGKGNVNLDNTNVRPL 168 (193)
Q Consensus 91 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (193)
+++|+|++++.++.....|+..+.. ....+.|+++|+||+|+.. ....++...... .. ...
T Consensus 102 iilV~D~~~~~s~~~~~~~~~~i~~-~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~-~~---------------~~~ 164 (192)
T 2il1_A 102 IILVYDITKKETFDDLPKWMKMIDK-YASEDAELLLVGNKLDCETDREITRQQGEKFAQ-QI---------------TGM 164 (192)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHH-HSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHH-TS---------------TTC
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHH-hcCCCCcEEEEEECcccccccccCHHHHHHHHH-hc---------------CCC
Confidence 9999999999988888777766643 2335799999999999963 233333322221 11 235
Q ss_pred EEEEEeeecCCChhHHHHhhhhhc
Q 029453 169 EVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 169 ~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
.++++||++|.|+++++++|.+.+
T Consensus 165 ~~~~~SA~~g~gi~~l~~~l~~~i 188 (192)
T 2il1_A 165 RFCEASAKDNFNVDEIFLKLVDDI 188 (192)
T ss_dssp EEEECBTTTTBSHHHHHHHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHH
Confidence 789999999999999999998754
No 67
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=3.8e-28 Score=172.39 Aligned_cols=158 Identities=20% Similarity=0.224 Sum_probs=119.9
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce-eEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEE
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPTS-EELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVV 92 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 92 (193)
..+.+||+++|.+|||||||++++.++.+.. ..+|.+... ..+..++ ..+.+||+||++. ...+..++..+|+++
T Consensus 25 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~ii 103 (196)
T 2atv_A 25 KSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGFV 103 (196)
T ss_dssp --CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEEE
Confidence 4578999999999999999999999888763 344444332 2344444 6799999999987 667778889999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhCCCccccCCCcccCCCCCCccEEE
Q 029453 93 YLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY--AASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEV 170 (193)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (193)
+|+|+++++++.....|+..+.......+.|+++|+||+|+.. ....++....... ..+++
T Consensus 104 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~-----------------~~~~~ 166 (196)
T 2atv_A 104 LVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATE-----------------LACAF 166 (196)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHH-----------------HTSEE
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHH-----------------hCCeE
Confidence 9999999999988888887776544446899999999999963 3333332221110 12478
Q ss_pred EEEeeecCC-ChhHHHHhhhhhc
Q 029453 171 FMCSIVRKM-GYGEGFKWLSQYI 192 (193)
Q Consensus 171 ~~~Sa~~~~-gi~~~~~~i~~~l 192 (193)
+++||++|. |++++|++|.+.+
T Consensus 167 ~~~Sa~~g~~gi~~l~~~l~~~i 189 (196)
T 2atv_A 167 YECSACTGEGNITEIFYELCREV 189 (196)
T ss_dssp EECCTTTCTTCHHHHHHHHHHHH
T ss_pred EEECCCcCCcCHHHHHHHHHHHH
Confidence 999999999 9999999998754
No 68
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.96 E-value=2.2e-28 Score=169.33 Aligned_cols=156 Identities=20% Similarity=0.276 Sum_probs=116.7
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCcc-ccCCCCCcc--eeEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEEE
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERLV-QHQPTQYPT--SEELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVVY 93 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 93 (193)
..+||+++|++|||||||++++.+..+. ...++.+.. ...+..++ ..+.+||+||++.+...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence 4689999999999999999999988865 334444433 34445443 579999999999988888889999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC-CCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEE
Q 029453 94 LIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY-AASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFM 172 (193)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (193)
|+|++++.++.....|+..+.... ..+.|+++|+||+|+.. ....++...... . ..+++++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-~----------------~~~~~~~ 143 (170)
T 1g16_A 82 VYDITDERTFTNIKQWFKTVNEHA-NDEAQLLLVGNKSDMETRVVTADQGEALAK-E----------------LGIPFIE 143 (170)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCTTCCSCHHHHHHHHH-H----------------HTCCEEE
T ss_pred EEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCCcCccCHHHHHHHHH-H----------------cCCeEEE
Confidence 999999988888888887775432 35789999999999953 233333222111 0 1136899
Q ss_pred EeeecCCChhHHHHhhhhhc
Q 029453 173 CSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 173 ~Sa~~~~gi~~~~~~i~~~l 192 (193)
+||++|.|+++++++|.+.+
T Consensus 144 ~Sa~~~~gv~~l~~~l~~~~ 163 (170)
T 1g16_A 144 SSAKNDDNVNEIFFTLAKLI 163 (170)
T ss_dssp CBTTTTBSHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHH
Confidence 99999999999999998754
No 69
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=4.9e-28 Score=167.81 Aligned_cols=157 Identities=17% Similarity=0.169 Sum_probs=117.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCcc-ccCCCCCcce-eEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEEEE
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERLV-QHQPTQYPTS-EELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVVYL 94 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 94 (193)
+.++|+++|++|||||||++++.++.+. ...++.+... ......+ ..+.+|||||++.+...+..++..+|++++|
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v 81 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV 81 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEE
Confidence 5689999999999999999999988765 3344444332 2233333 5789999999999988888899999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhCC-CCCCCcEEEEeeCCCCCCC--CCHHHHHHhhCCCccccCCCcccCCCCCCccEEEE
Q 029453 95 IDAYDKERFSESKRELDALLSDE-ALADVPFLILGNKIDIPYA--ASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVF 171 (193)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~-~~~~~pviiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (193)
+|++++.++.....++..+.... ...+.|+++|+||+|+... ....+..... .. ..++++
T Consensus 82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~-~~----------------~~~~~~ 144 (172)
T 2erx_A 82 YSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALA-RT----------------WKCAFM 144 (172)
T ss_dssp EETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHH-HH----------------HTCEEE
T ss_pred EECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHH-HH----------------hCCeEE
Confidence 99999988888777776665432 2247899999999998632 2222222111 00 124789
Q ss_pred EEeeecCCChhHHHHhhhhhc
Q 029453 172 MCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 172 ~~Sa~~~~gi~~~~~~i~~~l 192 (193)
++||++|.|+++++++|.+.+
T Consensus 145 ~~Sa~~~~gi~~l~~~l~~~~ 165 (172)
T 2erx_A 145 ETSAKLNHNVKELFQELLNLE 165 (172)
T ss_dssp ECBTTTTBSHHHHHHHHHHTC
T ss_pred EecCCCCcCHHHHHHHHHHHH
Confidence 999999999999999998765
No 70
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.96 E-value=1.7e-28 Score=175.34 Aligned_cols=158 Identities=17% Similarity=0.235 Sum_probs=93.0
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcC--Ccc-ccCCCCC--cceeEEEeC----CeEEEEEEcCChhhhHHhHHhhhccC
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDE--RLV-QHQPTQY--PTSEELSIG----KIKFKAFDLGGHQMARRVWKDYYAKV 88 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~--~~~-~~~~t~~--~~~~~~~~~----~~~~~~~D~~g~~~~~~~~~~~~~~~ 88 (193)
.+.++|+++|++|||||||++++.+. .+. ...+|.+ .....+.++ ...+.+|||||++.+...+..++..+
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 97 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV 97 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence 46689999999999999999999988 555 3444554 344556665 46899999999999999988999999
Q ss_pred CEEEEEEeCCChhhHHHHHHHHHHHHhCCC--CCCCcEEEEeeCCCCCC---CCCHHHHHHhhCCCccccCCCcccCCCC
Q 029453 89 DAVVYLIDAYDKERFSESKRELDALLSDEA--LADVPFLILGNKIDIPY---AASEDELRYHMGLTNFTTGKGNVNLDNT 163 (193)
Q Consensus 89 d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~pviiv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (193)
|++++|+|++++.++.....|+..+..... ..+.|+++|+||+|+.. ....++.......
T Consensus 98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~--------------- 162 (208)
T 2yc2_C 98 YYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATT--------------- 162 (208)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHH---------------
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHH---------------
Confidence 999999999999999998888888865433 25799999999999965 2333333322211
Q ss_pred CCccEEEEEEeeec-CCChhHHHHhhhhhc
Q 029453 164 NVRPLEVFMCSIVR-KMGYGEGFKWLSQYI 192 (193)
Q Consensus 164 ~~~~~~~~~~Sa~~-~~gi~~~~~~i~~~l 192 (193)
..++++++||++ |.|++++|++|.+.+
T Consensus 163 --~~~~~~~~Sa~~~~~gi~~l~~~i~~~~ 190 (208)
T 2yc2_C 163 --NTLDFFDVSANPPGKDADAPFLSIATTF 190 (208)
T ss_dssp --TTCEEEECCC-------CHHHHHHHHHH
T ss_pred --cCCEEEEeccCCCCcCHHHHHHHHHHHH
Confidence 114789999999 999999999998754
No 71
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.96 E-value=3.5e-28 Score=173.06 Aligned_cols=159 Identities=22% Similarity=0.230 Sum_probs=114.1
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHHhcCCcc-ccCCCCCc--ceeEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCE
Q 029453 16 LWQKEAKILFLGLDNSGKTTLLHMLKDERLV-QHQPTQYP--TSEELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDA 90 (193)
Q Consensus 16 ~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~-~~~~t~~~--~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ 90 (193)
...+.+||+++|++|||||||++++.+..+. ...++.+. ....+..++ ..+.+|||||++.+...+..++..+|+
T Consensus 24 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 103 (199)
T 2p5s_A 24 SSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADG 103 (199)
T ss_dssp ----CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSE
T ss_pred CcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCE
Confidence 4567899999999999999999999988865 33444443 234455554 579999999999999988999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--------CCCHHHHHHhhCCCccccCCCcccCCC
Q 029453 91 VVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY--------AASEDELRYHMGLTNFTTGKGNVNLDN 162 (193)
Q Consensus 91 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (193)
+++|+|++++.++.....|+..+... ...+.|+++|+||+|+.. ....++..... ..
T Consensus 104 iilv~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~-~~------------- 168 (199)
T 2p5s_A 104 VLLLYDVTCEKSFLNIREWVDMIEDA-AHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLA-MT------------- 168 (199)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHH-C---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHH-HH-------------
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcccccccccccccccCHHHHHHHH-HH-------------
Confidence 99999999999888888877766432 235789999999999851 12222211111 00
Q ss_pred CCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 163 TNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 163 ~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
..++++++||++|.|++++|++|.+.+
T Consensus 169 ---~~~~~~~~SA~~g~gv~el~~~l~~~i 195 (199)
T 2p5s_A 169 ---YGALFCETSAKDGSNIVEAVLHLAREV 195 (199)
T ss_dssp ---HTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ---cCCeEEEeeCCCCCCHHHHHHHHHHHH
Confidence 124789999999999999999998765
No 72
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.96 E-value=5e-28 Score=170.83 Aligned_cols=158 Identities=19% Similarity=0.266 Sum_probs=120.8
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce--eEEEeC--CeEEEEEEcCChhhhHHhHHhhhccCCEE
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPTS--EELSIG--KIKFKAFDLGGHQMARRVWKDYYAKVDAV 91 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~i 91 (193)
..+.+||+++|++|||||||++++.+..+.. ..++.+... ..+... ...+.+||+||++.+...+..++..+|++
T Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 98 (189)
T 2gf9_A 19 SDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGF 98 (189)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEE
T ss_pred cCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEE
Confidence 3467899999999999999999999888653 344544332 333443 36899999999998888888899999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhCCCccccCCCcccCCCCCCccEE
Q 029453 92 VYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY--AASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLE 169 (193)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (193)
++|+|++++.++.....|+..+... ...+.|+++|+||+|+.. ....++....... ..++
T Consensus 99 i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~ 160 (189)
T 2gf9_A 99 LLMYDIANQESFAAVQDWATQIKTY-SWDNAQVILVGNKCDLEDERVVPAEDGRRLADD-----------------LGFE 160 (189)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHH-----------------HTCE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcccccccCCCHHHHHHHHHH-----------------cCCe
Confidence 9999999999888888888777543 235799999999999963 2233332221110 1147
Q ss_pred EEEEeeecCCChhHHHHhhhhhc
Q 029453 170 VFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 170 ~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
++++||++|.|+++++++|.+.+
T Consensus 161 ~~~~Sa~~g~gi~~l~~~l~~~i 183 (189)
T 2gf9_A 161 FFEASAKENINVKQVFERLVDVI 183 (189)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 89999999999999999998754
No 73
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.96 E-value=8.6e-28 Score=165.46 Aligned_cols=157 Identities=17% Similarity=0.275 Sum_probs=119.7
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCcccc-CCCCCcc-eeEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEEEE
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERLVQH-QPTQYPT-SEELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVVYL 94 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~~~~-~~t~~~~-~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 94 (193)
+.++|+++|++|||||||++++.+..+... .++.... ...+..++ ..+.+||+||++++...+..++..+|++++|
T Consensus 2 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (166)
T 2ce2_X 2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 81 (166)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence 468999999999999999999998876543 3343322 23344444 5688999999998888888899999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC-CCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEE
Q 029453 95 IDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYA-ASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMC 173 (193)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (193)
+|++++.++.....|+..+.......+.|+++|+||+|+.+. ...++...... . ..++++++
T Consensus 82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~-~----------------~~~~~~~~ 144 (166)
T 2ce2_X 82 FAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLAR-S----------------YGIPYIET 144 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHH-H----------------HTCCEEEE
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHHHH-H----------------cCCeEEEe
Confidence 999999988888888877765443457999999999999752 33333222111 1 11368999
Q ss_pred eeecCCChhHHHHhhhhhc
Q 029453 174 SIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 174 Sa~~~~gi~~~~~~i~~~l 192 (193)
||++|.|+++++++|.+.+
T Consensus 145 Sa~~~~gi~~l~~~l~~~~ 163 (166)
T 2ce2_X 145 SAKTRQGVEDAFYTLVREI 163 (166)
T ss_dssp CTTTCTTHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHH
Confidence 9999999999999998764
No 74
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.96 E-value=2.6e-28 Score=174.46 Aligned_cols=160 Identities=18% Similarity=0.311 Sum_probs=120.8
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc--eeEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEE
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPT--SEELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAV 91 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~i 91 (193)
..+.++|+++|++|||||||++++.+..+.. ..++.+.. ...+..++ ..+.+|||||++.+...+..++..+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 84 (207)
T 1vg8_A 5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCC 84 (207)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEE
Confidence 4578999999999999999999999888653 34444433 23344443 6899999999999888888889999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhCCC---CCCCcEEEEeeCCCCCC-CCCHHHHHHhhCCCccccCCCcccCCCCCCcc
Q 029453 92 VYLIDAYDKERFSESKRELDALLSDEA---LADVPFLILGNKIDIPY-AASEDELRYHMGLTNFTTGKGNVNLDNTNVRP 167 (193)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~---~~~~pviiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (193)
++|+|++++.++.....|+..+..... ..+.|+++|+||+|+.. ....++........ ..
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~----------------~~ 148 (207)
T 1vg8_A 85 VLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSK----------------NN 148 (207)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHHT----------------TS
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHHhc----------------CC
Confidence 999999999988888888777754321 24789999999999973 23333333222101 22
Q ss_pred EEEEEEeeecCCChhHHHHhhhhhc
Q 029453 168 LEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 168 ~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
.+++++||++|.|+++++++|.+.+
T Consensus 149 ~~~~~~Sa~~g~gi~~l~~~l~~~~ 173 (207)
T 1vg8_A 149 IPYFETSAKEAINVEQAFQTIARNA 173 (207)
T ss_dssp CCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ceEEEEeCCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998754
No 75
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=7e-28 Score=171.12 Aligned_cols=161 Identities=16% Similarity=0.152 Sum_probs=119.7
Q ss_pred CCCCcccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce-eEEEeC--CeEEEEEEcCChhhhHHhHHhhhccCCE
Q 029453 15 GLWQKEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPTS-EELSIG--KIKFKAFDLGGHQMARRVWKDYYAKVDA 90 (193)
Q Consensus 15 ~~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 90 (193)
+.....++|+++|.+|||||||++++.++.+.. ..++.+... ..+... ...+.+|||||++.+...+..++..+|+
T Consensus 3 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 82 (199)
T 2gf0_A 3 PEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHA 82 (199)
T ss_dssp --CCCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSE
T ss_pred ccCCCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccceeEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCE
Confidence 345678999999999999999999999887653 334444332 223333 3578999999999998888889999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhCCC-CCCCcEEEEeeCCCCCCC-CCHHHHHHhhCCCccccCCCcccCCCCCCccE
Q 029453 91 VVYLIDAYDKERFSESKRELDALLSDEA-LADVPFLILGNKIDIPYA-ASEDELRYHMGLTNFTTGKGNVNLDNTNVRPL 168 (193)
Q Consensus 91 ii~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~pviiv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (193)
+++|+|++++.++.....++..+..... ..+.|+++|+||+|+... ...++...... . ..+
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-~----------------~~~ 145 (199)
T 2gf0_A 83 FILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAVAQ-E----------------WKC 145 (199)
T ss_dssp EEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHHHHH-H----------------HTC
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHHHHH-H----------------hCC
Confidence 9999999999888887777665544221 247899999999999743 23332222111 0 124
Q ss_pred EEEEEeeecCCChhHHHHhhhhhc
Q 029453 169 EVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 169 ~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
+++++||++|.|+++++++|.+.+
T Consensus 146 ~~~~~Sa~~~~gi~~l~~~l~~~~ 169 (199)
T 2gf0_A 146 AFMETSAKMNYNVKELFQELLTLE 169 (199)
T ss_dssp EEEECBTTTTBSHHHHHHHHHHHC
T ss_pred eEEEEecCCCCCHHHHHHHHHHHH
Confidence 789999999999999999998754
No 76
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.96 E-value=9.4e-28 Score=171.59 Aligned_cols=158 Identities=20% Similarity=0.283 Sum_probs=122.9
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc--eeEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEE
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPT--SEELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAV 91 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~i 91 (193)
..+.++|+++|++|||||||++++.+..+.. ..++.+.. ...+.+++ ..+.+|||||++.+...+..++..+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~v 84 (206)
T 2bcg_Y 5 YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGI 84 (206)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEE
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEE
Confidence 4567999999999999999999999888763 34454433 34455555 5899999999999988888899999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC--CCHHHHHHhhCCCccccCCCcccCCCCCCccEE
Q 029453 92 VYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYA--ASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLE 169 (193)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (193)
++|+|++++.++.....|+..+.... ..+.|+++|+||+|+... ...++....... ..++
T Consensus 85 ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~ 146 (206)
T 2bcg_Y 85 IIVYDVTDQESFNGVKMWLQEIDRYA-TSTVLKLLVGNKCDLKDKRVVEYDVAKEFADA-----------------NKMP 146 (206)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHHHHH-----------------TTCC
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHHHH-----------------cCCe
Confidence 99999999999998888887775432 357999999999999742 233332222111 1146
Q ss_pred EEEEeeecCCChhHHHHhhhhhc
Q 029453 170 VFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 170 ~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
++++||++|.|++++|++|.+.+
T Consensus 147 ~~~~Sa~~g~gi~~l~~~l~~~i 169 (206)
T 2bcg_Y 147 FLETSALDSTNVEDAFLTMARQI 169 (206)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHHH
Confidence 89999999999999999998754
No 77
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.96 E-value=1.1e-27 Score=169.06 Aligned_cols=159 Identities=18% Similarity=0.270 Sum_probs=111.0
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCcccc-CCCCCcc-eeEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEE
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQH-QPTQYPT-SEELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVV 92 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~-~~t~~~~-~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 92 (193)
..+.++|+++|.+|||||||++++.+..+... .++.... ...+...+ ..+.+||+||++.+...+..++..+|+++
T Consensus 18 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 97 (190)
T 3con_A 18 GMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL 97 (190)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----------CTTCSEEE
T ss_pred ccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEE
Confidence 34779999999999999999999998876533 3333322 23444554 56899999999999888889999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC-CCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEE
Q 029453 93 YLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY-AASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVF 171 (193)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (193)
+|+|++++.++.....|+..+.......+.|+++|+||+|+.. ....++..+.... ..++++
T Consensus 98 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~-----------------~~~~~~ 160 (190)
T 3con_A 98 CVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAKS-----------------YGIPFI 160 (190)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHH-----------------HTCCEE
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHHHHHH-----------------cCCeEE
Confidence 9999999998888888777775543335799999999999974 3333333222111 113689
Q ss_pred EEeeecCCChhHHHHhhhhhc
Q 029453 172 MCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 172 ~~Sa~~~~gi~~~~~~i~~~l 192 (193)
++||++|.|+++++++|.+.+
T Consensus 161 ~~Sa~~~~gi~~l~~~l~~~~ 181 (190)
T 3con_A 161 ETSAKTRQGVEDAFYTLVREI 181 (190)
T ss_dssp ECCTTTCTTHHHHHHHHHHHH
T ss_pred EEeCCCCCCHHHHHHHHHHHH
Confidence 999999999999999998754
No 78
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.95 E-value=3.6e-28 Score=175.19 Aligned_cols=160 Identities=20% Similarity=0.258 Sum_probs=119.6
Q ss_pred CCCCcccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcceeEEEe--C-C--eEEEEEEcCChhhhHHhHHhhhccC
Q 029453 15 GLWQKEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPTSEELSI--G-K--IKFKAFDLGGHQMARRVWKDYYAKV 88 (193)
Q Consensus 15 ~~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~--~-~--~~~~~~D~~g~~~~~~~~~~~~~~~ 88 (193)
......+||+++|.+|||||||++++.++.+.. ..++.+........ . + ..+.+|||||++.+...+..++..+
T Consensus 6 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 85 (218)
T 4djt_A 6 ERRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGA 85 (218)
T ss_dssp ----CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTC
T ss_pred ccccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcC
Confidence 345678999999999999999999999877653 33455444333332 1 2 6799999999999888888889999
Q ss_pred CEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC--CCHHHHHHhhCCCccccCCCcccCCCCCCc
Q 029453 89 DAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYA--ASEDELRYHMGLTNFTTGKGNVNLDNTNVR 166 (193)
Q Consensus 89 d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (193)
|++++|+|++++.++.....|+..+.... ..+.|+++|+||+|+... ...++....... .
T Consensus 86 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~ 147 (218)
T 4djt_A 86 SGAILFFDVTSRITCQNLARWVKEFQAVV-GNEAPIVVCANKIDIKNRQKISKKLVMEVLKG-----------------K 147 (218)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHH-CSSSCEEEEEECTTCC----CCHHHHHHHTTT-----------------C
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHHHH-----------------c
Confidence 99999999999998888888777775432 246899999999999742 333333222221 2
Q ss_pred cEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 167 PLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 167 ~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
.++++++||++|.|+++++++|.+.+
T Consensus 148 ~~~~~~~Sa~~g~gv~~l~~~l~~~~ 173 (218)
T 4djt_A 148 NYEYFEISAKTAHNFGLPFLHLARIF 173 (218)
T ss_dssp CCEEEEEBTTTTBTTTHHHHHHHHHH
T ss_pred CCcEEEEecCCCCCHHHHHHHHHHHH
Confidence 25799999999999999999998754
No 79
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.95 E-value=2.7e-28 Score=175.63 Aligned_cols=158 Identities=18% Similarity=0.164 Sum_probs=117.9
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHHhcCCcccc-CCCCCccee-EEE--eCCeEEEEEEcCChhhhHHhHHhhhccCCEE
Q 029453 16 LWQKEAKILFLGLDNSGKTTLLHMLKDERLVQH-QPTQYPTSE-ELS--IGKIKFKAFDLGGHQMARRVWKDYYAKVDAV 91 (193)
Q Consensus 16 ~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~-~~t~~~~~~-~~~--~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~i 91 (193)
...+.+||+++|.+|||||||++++.++.+... .+|.+.... .+. .....+.+|||+|++.+...+..++..+|++
T Consensus 23 ~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 102 (214)
T 3q3j_B 23 PVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAV 102 (214)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred CccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEE
Confidence 345789999999999999999999998887643 455544332 222 3347899999999999998888999999999
Q ss_pred EEEEeCCChhhHHH-HHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC--------------CCHHHHHHhhCCCccccCCC
Q 029453 92 VYLIDAYDKERFSE-SKRELDALLSDEALADVPFLILGNKIDIPYA--------------ASEDELRYHMGLTNFTTGKG 156 (193)
Q Consensus 92 i~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~--------------~~~~~~~~~~~~~~~~~~~~ 156 (193)
++|+|+++++++.. ...|+..+.... .+.|+++|+||+|+... ...++.......
T Consensus 103 i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-------- 172 (214)
T 3q3j_B 103 LLCFDISRPETVDSALKKWRTEILDYC--PSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQ-------- 172 (214)
T ss_dssp EEEEETTCTHHHHHHHTHHHHHHHHHC--TTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHH--------
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHH--------
Confidence 99999999999988 567777765432 58999999999999642 222221111100
Q ss_pred cccCCCCCCccE-EEEEEeeecCCC-hhHHHHhhhhhc
Q 029453 157 NVNLDNTNVRPL-EVFMCSIVRKMG-YGEGFKWLSQYI 192 (193)
Q Consensus 157 ~~~~~~~~~~~~-~~~~~Sa~~~~g-i~~~~~~i~~~l 192 (193)
..+ .+++|||++|.| ++++|++|.+.+
T Consensus 173 ---------~~~~~~~e~SA~~g~g~v~~lf~~l~~~~ 201 (214)
T 3q3j_B 173 ---------LGAEIYLEGSAFTSEKSIHSIFRTASMLC 201 (214)
T ss_dssp ---------HTCSEEEECCTTTCHHHHHHHHHHHHHHH
T ss_pred ---------cCCCEEEEeccCCCcccHHHHHHHHHHHH
Confidence 123 789999999998 999999997754
No 80
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.95 E-value=9.4e-28 Score=173.76 Aligned_cols=158 Identities=20% Similarity=0.260 Sum_probs=118.3
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCc--ceeEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEE
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYP--TSEELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAV 91 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~i 91 (193)
..+.++|+++|++|||||||++++.+..+.. ..++.+. ....+.+++ ..+.+|||||++.+...+..++..+|++
T Consensus 10 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~v 89 (223)
T 3cpj_B 10 YDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGA 89 (223)
T ss_dssp CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEE
T ss_pred CCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEE
Confidence 4567999999999999999999999888763 3444443 334556665 6899999999999988888899999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhCCCccccCCCcccCCCCCCccEE
Q 029453 92 VYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY--AASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLE 169 (193)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (193)
++|+|++++.++.....|+..+.... ..+.|+++|+||+|+.. ....++....... ..++
T Consensus 90 ilV~D~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~-----------------~~~~ 151 (223)
T 3cpj_B 90 LIVYDISKSSSYENCNHWLSELRENA-DDNVAVGLIGNKSDLAHLRAVPTEESKTFAQE-----------------NQLL 151 (223)
T ss_dssp EEEEC-CCHHHHHHHHHHHHHHHHHC-C--CEEEEEECCGGGGGGCCSCHHHHHHHHHH-----------------TTCE
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccccccccCHHHHHHHHHH-----------------cCCE
Confidence 99999999999998888888775432 35789999999999963 3333333222111 1247
Q ss_pred EEEEeeecCCChhHHHHhhhhhc
Q 029453 170 VFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 170 ~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
++++||++|.|++++|++|.+.+
T Consensus 152 ~~~~Sa~~~~gi~~l~~~l~~~i 174 (223)
T 3cpj_B 152 FTETSALNSENVDKAFEELINTI 174 (223)
T ss_dssp EEECCCC-CCCHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHHH
Confidence 89999999999999999998754
No 81
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.95 E-value=1.5e-27 Score=171.16 Aligned_cols=158 Identities=20% Similarity=0.283 Sum_probs=120.1
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCcc-ccCCCCCc--ceeEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEE
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLV-QHQPTQYP--TSEELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAV 91 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~-~~~~t~~~--~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~i 91 (193)
..+.++|+++|++|||||||++++.+..+. ...++.+. ....+.+++ ..+.+|||||++.+...+..++..+|++
T Consensus 17 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 96 (213)
T 3cph_A 17 YDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGI 96 (213)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEE
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEE
Confidence 456799999999999999999999988765 34444443 334556666 6899999999999988888899999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC-CCHHHHHHhhCCCccccCCCcccCCCCCCccEEE
Q 029453 92 VYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYA-ASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEV 170 (193)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (193)
++|+|++++.++.....|+..+.... ..+.|+++|+||+|+... ...++...... . ..+++
T Consensus 97 i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-~----------------~~~~~ 158 (213)
T 3cph_A 97 ILVYDVTDERTFTNIKQWFKTVNEHA-NDEAQLLLVGNKSDMETRVVTADQGEALAK-E----------------LGIPF 158 (213)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHT-TTCSEEEEEEECTTCSSCCSCHHHHHHHHH-H----------------HTCCE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCcccccCHHHHHHHHH-H----------------cCCEE
Confidence 99999999988888888887775432 247899999999999532 23332222111 0 11368
Q ss_pred EEEeeecCCChhHHHHhhhhhc
Q 029453 171 FMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 171 ~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
+++||++|.|+++++++|.+.+
T Consensus 159 ~~~Sa~~~~gi~~l~~~l~~~~ 180 (213)
T 3cph_A 159 IESSAKNDDNVNEIFFTLAKLI 180 (213)
T ss_dssp EECBTTTTBSSHHHHHHHHHHH
T ss_pred EEEeCCCCCCHHHHHHHHHHHH
Confidence 9999999999999999998754
No 82
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.95 E-value=1.9e-27 Score=169.47 Aligned_cols=172 Identities=17% Similarity=0.278 Sum_probs=119.5
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce-eEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEE
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPTS-EELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVV 92 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 92 (193)
....+||+++|.+|||||||++++.++.+.. +.+|.+... ..+..++ ..+.+|||||++.+...+..++..+|+++
T Consensus 22 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (201)
T 2gco_A 22 AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (201)
T ss_dssp CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEEEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEE
Confidence 4578999999999999999999999888763 334444332 3455554 57899999999999888888899999999
Q ss_pred EEEeCCChhhHHHHH-HHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEE
Q 029453 93 YLIDAYDKERFSESK-RELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVF 171 (193)
Q Consensus 93 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (193)
+|+|+++++++.... .|+..+... ..+.|+++|+||+|+.......+....+.......... ..... ......++
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~-~~~~~-~~~~~~~~ 177 (201)
T 2gco_A 102 MCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEG-RDMAN-RISAFGYL 177 (201)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHH--STTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHH-HHHHH-HTTCSEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHH-HHHHH-hCCCcEEE
Confidence 999999999898884 555554332 14799999999999975422222111111111000000 00000 00123789
Q ss_pred EEeeecCCChhHHHHhhhhhc
Q 029453 172 MCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 172 ~~Sa~~~~gi~~~~~~i~~~l 192 (193)
++||++|.|+++++++|.+.+
T Consensus 178 ~~SA~~g~gi~~l~~~i~~~~ 198 (201)
T 2gco_A 178 ECSAKTKEGVREVFEMATRAG 198 (201)
T ss_dssp ECCTTTCTTHHHHHHHHHHHH
T ss_pred EeeCCCCCCHHHHHHHHHHHH
Confidence 999999999999999998753
No 83
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=9.2e-28 Score=170.05 Aligned_cols=170 Identities=19% Similarity=0.244 Sum_probs=118.1
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce-eEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEEEE
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPTS-EELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVVYL 94 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 94 (193)
+.++|+++|++|||||||++++.++.+.. ..+|.+... ..+..++ ..+.+||+||++++...+..++..+|++++|
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 96 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLIC 96 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEEEE
Confidence 67899999999999999999999887653 344544332 3445544 6889999999999888888899999999999
Q ss_pred EeCCChhhHHHHH-HHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEE
Q 029453 95 IDAYDKERFSESK-RELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMC 173 (193)
Q Consensus 95 ~d~~~~~~~~~~~-~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (193)
+|+++++++.... .|+..+... ..+.|+++|+||+|+.......+.............. ...... .....+++++
T Consensus 97 ~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~-~~~~~~-~~~~~~~~~~ 172 (194)
T 2atx_A 97 FSVVNPASFQNVKEEWVPELKEY--APNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQ-GQKLAK-EIGACCYVEC 172 (194)
T ss_dssp EETTCHHHHHHHHHTHHHHHHHH--STTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHH-HHHHHH-HHTCSCEEEC
T ss_pred EECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhcccccchhhcccccCcccCHHH-HHHHHH-HcCCcEEEEe
Confidence 9999999998887 566666543 2479999999999997432111111000000000000 000000 0011368999
Q ss_pred eeecCCChhHHHHhhhhhc
Q 029453 174 SIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 174 Sa~~~~gi~~~~~~i~~~l 192 (193)
||++|.|++++|++|.+.+
T Consensus 173 Sa~~g~gi~~l~~~l~~~i 191 (194)
T 2atx_A 173 SALTQKGLKTVFDEAIIAI 191 (194)
T ss_dssp CTTTCTTHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHH
Confidence 9999999999999998754
No 84
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.95 E-value=2.4e-28 Score=174.61 Aligned_cols=174 Identities=17% Similarity=0.240 Sum_probs=118.0
Q ss_pred CCCCcccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc-eeEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCE
Q 029453 15 GLWQKEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPT-SEELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDA 90 (193)
Q Consensus 15 ~~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~-~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ 90 (193)
....+.+||+++|.+|||||||++++.++.+.. ..+|.... ...+..++ ..+.+|||||++.+...+..++..+|+
T Consensus 25 ~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 104 (204)
T 4gzl_A 25 YFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDV 104 (204)
T ss_dssp -----CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred hhcCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCE
Confidence 345678999999999999999999999887763 33444322 22334444 566699999999998888889999999
Q ss_pred EEEEEeCCChhhHHHHH-HHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEE
Q 029453 91 VVYLIDAYDKERFSESK-RELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLE 169 (193)
Q Consensus 91 ii~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (193)
+++|+|++++.++.... .|+..+.... .+.|+++|+||+|+.......+................ ... ......+
T Consensus 105 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~-~~~-~~~~~~~ 180 (204)
T 4gzl_A 105 FLICFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGL-AMA-KEIGAVK 180 (204)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHC--SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHH-HHH-HHTTCSE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEechhhccchhhhhhhhccccccccHHHHH-HHH-HhcCCcE
Confidence 99999999999998886 5555554332 57999999999999754332222222211110000000 000 0002246
Q ss_pred EEEEeeecCCChhHHHHhhhhhc
Q 029453 170 VFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 170 ~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
++++||++|.|++++|++|.+.+
T Consensus 181 ~~~~SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 181 YLECSALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp EEECCTTTCTTHHHHHHHHHHTT
T ss_pred EEEeeCCCCCCHHHHHHHHHHHh
Confidence 99999999999999999998764
No 85
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.95 E-value=3.2e-28 Score=171.69 Aligned_cols=159 Identities=19% Similarity=0.229 Sum_probs=115.8
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce-eEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEE
Q 029453 16 LWQKEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPTS-EELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAV 91 (193)
Q Consensus 16 ~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~i 91 (193)
...+.+||+++|.+|||||||++++.++.+.. +.+|.+... .....++ ..+.+|||||++.+... ..++..+|++
T Consensus 17 ~~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~ 95 (187)
T 3c5c_A 17 QGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAF 95 (187)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEE
T ss_pred CCCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEE
Confidence 34578999999999999999999999888663 344554332 2334443 57889999999887764 5688999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhCCC--CCCCcEEEEeeCCCCCC--CCCHHHHHHhhCCCccccCCCcccCCCCCCcc
Q 029453 92 VYLIDAYDKERFSESKRELDALLSDEA--LADVPFLILGNKIDIPY--AASEDELRYHMGLTNFTTGKGNVNLDNTNVRP 167 (193)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~pviiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (193)
++|+|+++++++.....|+..+..... ..+.|+++|+||+|+.. ....++....... ..
T Consensus 96 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~-----------------~~ 158 (187)
T 3c5c_A 96 LVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGR-----------------FG 158 (187)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHH-----------------HT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHH-----------------cC
Confidence 999999999999998888887764311 14789999999999962 3333333222111 12
Q ss_pred EEEEEEee-ecCCChhHHHHhhhhhc
Q 029453 168 LEVFMCSI-VRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 168 ~~~~~~Sa-~~~~gi~~~~~~i~~~l 192 (193)
+.++++|| ++|.|++++|++|.+.+
T Consensus 159 ~~~~e~Sa~~~g~gv~~lf~~l~~~i 184 (187)
T 3c5c_A 159 CLFFEVSACLDFEHVQHVFHEAVREA 184 (187)
T ss_dssp CEEEECCSSSCSHHHHHHHHHHHHHH
T ss_pred CcEEEEeecCccccHHHHHHHHHHHH
Confidence 47899999 89999999999998764
No 86
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.95 E-value=1.7e-28 Score=177.42 Aligned_cols=158 Identities=18% Similarity=0.301 Sum_probs=120.6
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHHhcCCcc-ccCCCCCcceeE--EEe--CCeEEEEEEcCChhhhHHhHHhhhccCCE
Q 029453 16 LWQKEAKILFLGLDNSGKTTLLHMLKDERLV-QHQPTQYPTSEE--LSI--GKIKFKAFDLGGHQMARRVWKDYYAKVDA 90 (193)
Q Consensus 16 ~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~~~--~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 90 (193)
...+.+||+++|.+|||||||++++..+.+. .+.++.+.+... ... ....+.+|||||++.+...+..++..+|+
T Consensus 11 ~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 90 (221)
T 3gj0_A 11 EPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQC 90 (221)
T ss_dssp CCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCE
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCE
Confidence 3457899999999999999999997665544 334555444332 233 34689999999999998888889999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEE
Q 029453 91 VVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEV 170 (193)
Q Consensus 91 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (193)
+++|+|++++.++.....|+..+.... .+.|+++|+||+|+.......+.. .... ...+.+
T Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~-----~~~~------------~~~~~~ 151 (221)
T 3gj0_A 91 AIIMFDVTSRVTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKDRKVKAKSI-----VFHR------------KKNLQY 151 (221)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHS--TTCCEEEEEECTTSSSCSSCGGGC-----CHHH------------HHTCEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECCccccccccHHHH-----HHHH------------HcCCEE
Confidence 999999999999988888888886543 478999999999997433221110 0000 023578
Q ss_pred EEEeeecCCChhHHHHhhhhhc
Q 029453 171 FMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 171 ~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
+++||++|.|++++|++|.+.+
T Consensus 152 ~~~Sa~~~~gi~~l~~~l~~~l 173 (221)
T 3gj0_A 152 YDISAKSNYNFEKPFLWLARKL 173 (221)
T ss_dssp EECBGGGTBTTTHHHHHHHHHH
T ss_pred EEEeCCCCCCHHHHHHHHHHHH
Confidence 9999999999999999998754
No 87
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=7.3e-27 Score=167.57 Aligned_cols=158 Identities=15% Similarity=0.164 Sum_probs=114.0
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCc--cccCCCCCcc--eeEEEeCC--eEEEEEEcCChhh-hHHhHHhhhccCCE
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERL--VQHQPTQYPT--SEELSIGK--IKFKAFDLGGHQM-ARRVWKDYYAKVDA 90 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~--~~~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~-~~~~~~~~~~~~d~ 90 (193)
.+.+||+++|.+|||||||++++.+... ....++.+.. ...+.+++ ..+.+|||+|++. +......++..+++
T Consensus 35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~ 114 (211)
T 2g3y_A 35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA 114 (211)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCCE
Confidence 4668999999999999999999986543 3333333333 34455555 4567899999876 44455566778999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhCCCccccCCCcccCCCCCCccE
Q 029453 91 VVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY--AASEDELRYHMGLTNFTTGKGNVNLDNTNVRPL 168 (193)
Q Consensus 91 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (193)
+++|+|++++++|.....|+..+.......++|+++|+||+|+.. ....++... +... ..+
T Consensus 115 ~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~-~a~~----------------~~~ 177 (211)
T 2g3y_A 115 YLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRA-CAVV----------------FDC 177 (211)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHH-HHHH----------------HTC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHH-HHHH----------------cCC
Confidence 999999999999999888887775433335799999999999963 333332111 1000 124
Q ss_pred EEEEEeeecCCChhHHHHhhhhhc
Q 029453 169 EVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 169 ~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
+++++||++|.|++++|++|.+.+
T Consensus 178 ~~~e~SAk~g~~v~elf~~l~~~i 201 (211)
T 2g3y_A 178 KFIETSAAVQHNVKELFEGIVRQV 201 (211)
T ss_dssp EEEECBTTTTBSHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHH
Confidence 789999999999999999998754
No 88
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.95 E-value=1.7e-27 Score=171.40 Aligned_cols=173 Identities=18% Similarity=0.261 Sum_probs=102.1
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc-eeEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEE
Q 029453 16 LWQKEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPT-SEELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAV 91 (193)
Q Consensus 16 ~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~-~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~i 91 (193)
...+.+||+++|.+|||||||++++.++.+.. ..+|.... ...+..++ ..+.+|||||++.+...+..++..+|++
T Consensus 30 ~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~ 109 (214)
T 2j1l_A 30 PGVRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVL 109 (214)
T ss_dssp --CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEEEEEEEETTEEEEEEEEEC---------------CEEEE
T ss_pred CCcceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEE
Confidence 34578999999999999999999999887653 33444322 23344444 4789999999999998888899999999
Q ss_pred EEEEeCCChhhHHHHH-HHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEE
Q 029453 92 VYLIDAYDKERFSESK-RELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEV 170 (193)
Q Consensus 92 i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (193)
++|+|++++.++.... .|+..+.... .+.|+++|+||+|+.......+............... ..... ......+
T Consensus 110 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~-~~~~~-~~~~~~~ 185 (214)
T 2j1l_A 110 LLCFDVTSPNSFDNIFNRWYPEVNHFC--KKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRG-QEMAR-SVGAVAY 185 (214)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC--SSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHH-HHHHH-HTTCSEE
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhhhccchhhhhhcccccCcccHHHH-HHHHH-hcCCCEE
Confidence 9999999999998876 5666654322 5789999999999975432222221111111000000 00000 0012389
Q ss_pred EEEeeecCCChhHHHHhhhhhc
Q 029453 171 FMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 171 ~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
+++||++|.|++++|++|.+.+
T Consensus 186 ~~~SA~~g~gi~el~~~l~~~~ 207 (214)
T 2j1l_A 186 LECSARLHDNVHAVFQEAAEVA 207 (214)
T ss_dssp EECBTTTTBSHHHHHHHHHHHH
T ss_pred EEecCCCCCCHHHHHHHHHHHH
Confidence 9999999999999999998753
No 89
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.95 E-value=1.6e-27 Score=169.76 Aligned_cols=159 Identities=14% Similarity=0.205 Sum_probs=112.4
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce-eEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEE
Q 029453 16 LWQKEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPTS-EELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAV 91 (193)
Q Consensus 16 ~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~i 91 (193)
...+.++|+++|++|||||||++++.++.+.. ..+|.+... ..+..++ ..+.+|||||++.+...+..++.++|++
T Consensus 16 ~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 95 (201)
T 2q3h_A 16 AEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIF 95 (201)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEE
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEE
Confidence 35678999999999999999999999887653 334444322 3445555 4677999999999888888889999999
Q ss_pred EEEEeCCChhhHHHHH-HHHHHHHhCCCCCCCcEEEEeeCCCCCCCC--------------CHHHHHHhhCCCccccCCC
Q 029453 92 VYLIDAYDKERFSESK-RELDALLSDEALADVPFLILGNKIDIPYAA--------------SEDELRYHMGLTNFTTGKG 156 (193)
Q Consensus 92 i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~--------------~~~~~~~~~~~~~~~~~~~ 156 (193)
++|+|+++++++.... .|+..+.... .+.|+++|+||+|+.... ..++..... ...
T Consensus 96 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~------ 166 (201)
T 2q3h_A 96 LLCFSVVSPSSFQNVSEKWVPEIRCHC--PKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLA-EEI------ 166 (201)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC--SSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHH-HHH------
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHH-Hhc------
Confidence 9999999999998886 5666665432 479999999999996421 111111100 000
Q ss_pred cccCCCCCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 157 NVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 157 ~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
...+++++||++|.|++++|++|.+.+
T Consensus 167 ---------~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 193 (201)
T 2q3h_A 167 ---------KAASYIECSALTQKNLKEVFDAAIVAG 193 (201)
T ss_dssp ---------TCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ---------CCcEEEEEecCCCCCHHHHHHHHHHHH
Confidence 123789999999999999999997753
No 90
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.95 E-value=2e-27 Score=166.87 Aligned_cols=171 Identities=16% Similarity=0.261 Sum_probs=118.1
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce-eEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEEE
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPTS-EELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVVY 93 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 93 (193)
.+.++|+++|++|||||||++++.++.+.. ..+|..... ..+..++ ..+.+|||||++.+...+..++..+|++++
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 82 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI 82 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEE
Confidence 467899999999999999999999887653 334443322 3344444 567799999999998888888999999999
Q ss_pred EEeCCChhhHHHHH-HHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEE
Q 029453 94 LIDAYDKERFSESK-RELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFM 172 (193)
Q Consensus 94 v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (193)
|+|++++.++.... .|+..+.... .+.|+++|+||+|+.......+............... ..... .....++++
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~-~~~~~-~~~~~~~~~ 158 (186)
T 1mh1_A 83 CFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQG-LAMAK-EIGAVKYLE 158 (186)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHS--TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHH-HHHHH-HTTCSEEEE
T ss_pred EEECCChhhHHHHHHHHHHHHHHhC--CCCCEEEEeEcccccccchhhhhhcccccccCCHHHH-HHHHH-hcCCcEEEE
Confidence 99999999898877 5666554322 3799999999999964322211111111111000000 00000 001138999
Q ss_pred EeeecCCChhHHHHhhhhhc
Q 029453 173 CSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 173 ~Sa~~~~gi~~~~~~i~~~l 192 (193)
+||++|.|+++++++|.+.+
T Consensus 159 ~Sa~~g~gi~~l~~~l~~~~ 178 (186)
T 1mh1_A 159 CSALTQRGLKTVFDEAIRAV 178 (186)
T ss_dssp CCTTTCTTHHHHHHHHHHHH
T ss_pred ecCCCccCHHHHHHHHHHHH
Confidence 99999999999999998764
No 91
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.95 E-value=6.5e-28 Score=169.59 Aligned_cols=158 Identities=20% Similarity=0.251 Sum_probs=116.0
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce-eEEEeC--CeEEEEEEcCChhhhHHhHHhhhccCCEEE
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPTS-EELSIG--KIKFKAFDLGGHQMARRVWKDYYAKVDAVV 92 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 92 (193)
..+.+||+++|++|||||||++++.+..+.. +.+|.+... ..+..+ ...+.+|||||++.+...+..++..+|+++
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 83 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 83 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEE
Confidence 4578999999999999999999999887753 344544332 233333 367899999999998888888899999999
Q ss_pred EEEeCCChhhHHHH-HHHHHHHHhCCCCCCCcEEEEeeCCCCCCC--------------CCHHHHHHhhCCCccccCCCc
Q 029453 93 YLIDAYDKERFSES-KRELDALLSDEALADVPFLILGNKIDIPYA--------------ASEDELRYHMGLTNFTTGKGN 157 (193)
Q Consensus 93 ~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~--------------~~~~~~~~~~~~~~~~~~~~~ 157 (193)
+|+|+++++++... ..|+..+... ..+.|+++|+||+|+... ...++...... ..
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~------- 153 (184)
T 1m7b_A 84 ICFDISRPETLDSVLKKWKGEIQEF--CPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAK-QI------- 153 (184)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHH--CTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHH-HH-------
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHH--CCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHH-Hc-------
Confidence 99999999999887 5666555432 247999999999999632 11111111100 00
Q ss_pred ccCCCCCCccEEEEEEeee-cCCChhHHHHhhhhhc
Q 029453 158 VNLDNTNVRPLEVFMCSIV-RKMGYGEGFKWLSQYI 192 (193)
Q Consensus 158 ~~~~~~~~~~~~~~~~Sa~-~~~gi~~~~~~i~~~l 192 (193)
...+++++||+ ++.|++++|++|.+.+
T Consensus 154 --------~~~~~~e~Sa~~~~~gi~~l~~~i~~~~ 181 (184)
T 1m7b_A 154 --------GAATYIECSALQSENSVRDIFHVATLAC 181 (184)
T ss_dssp --------TCSEEEECBTTTBHHHHHHHHHHHHHHH
T ss_pred --------CCcEEEEeeecCCCcCHHHHHHHHHHHH
Confidence 12478999999 6899999999998753
No 92
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.95 E-value=4.1e-27 Score=164.28 Aligned_cols=163 Identities=18% Similarity=0.204 Sum_probs=118.1
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHHhcCCcccc-CC--CCCcceeEEEeCCeEEEEEEcCChhhhHHhHHhhhccCCEEE
Q 029453 16 LWQKEAKILFLGLDNSGKTTLLHMLKDERLVQH-QP--TQYPTSEELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVV 92 (193)
Q Consensus 16 ~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~-~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 92 (193)
...+.++|+++|++|||||||++++.+..+... .+ +.......+.+++..+.+|||||++.+...+..++..+|+++
T Consensus 4 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 83 (178)
T 2lkc_A 4 MVERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTTMRARGAQVTDIVI 83 (178)
T ss_dssp TCCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSCSCCSSCCCCCEEE
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHHHHHHHHhhCCEEE
Confidence 456889999999999999999999998877632 23 334445667788899999999999988887778888999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEE
Q 029453 93 YLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFM 172 (193)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (193)
+|+|++++..... ...+..+.. .+.|+++|+||+|+... ..+++...+..... .........++++
T Consensus 84 ~v~d~~~~~~~~~-~~~l~~~~~----~~~p~ilv~nK~Dl~~~-~~~~~~~~~~~~~~--------~~~~~~~~~~~~~ 149 (178)
T 2lkc_A 84 LVVAADDGVMPQT-VEAINHAKA----ANVPIIVAINKMDKPEA-NPDRVMQELMEYNL--------VPEEWGGDTIFCK 149 (178)
T ss_dssp EEEETTCCCCHHH-HHHHHHHGG----GSCCEEEEEETTTSSCS-CHHHHHHHHTTTTC--------CBTTTTSSEEEEE
T ss_pred EEEECCCCCcHHH-HHHHHHHHh----CCCCEEEEEECccCCcC-CHHHHHHHHHhcCc--------ChhHcCCcccEEE
Confidence 9999988432222 222333321 47899999999999753 33444443322110 0011112378999
Q ss_pred EeeecCCChhHHHHhhhhhc
Q 029453 173 CSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 173 ~Sa~~~~gi~~~~~~i~~~l 192 (193)
+||++|.|+++++++|.+.+
T Consensus 150 ~Sa~~~~gv~~l~~~l~~~~ 169 (178)
T 2lkc_A 150 LSAKTKEGLDHLLEMILLVS 169 (178)
T ss_dssp CCSSSSHHHHHHHHHHHHHH
T ss_pred EecCCCCCHHHHHHHHHHhh
Confidence 99999999999999998754
No 93
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=4.3e-27 Score=168.42 Aligned_cols=172 Identities=16% Similarity=0.262 Sum_probs=116.7
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce-eEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEE
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPTS-EELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVV 92 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 92 (193)
...++||+++|.+|||||||++++.++.+.. ..+|.+... ..+..++ ..+.+|||||++.+...+..++..+|+++
T Consensus 22 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (207)
T 2fv8_A 22 SMIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (207)
T ss_dssp GSEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEE
T ss_pred cccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEE
Confidence 3567899999999999999999999888763 334443332 3345554 57899999999998888888899999999
Q ss_pred EEEeCCChhhHHHH-HHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEE
Q 029453 93 YLIDAYDKERFSES-KRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVF 171 (193)
Q Consensus 93 ~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (193)
+|+|+++++++... ..|+..+... ..+.|+++|+||+|+.......+....+.......... ...+. ......++
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~-~~~~~-~~~~~~~~ 177 (207)
T 2fv8_A 102 MCFSVDSPDSLENIPEKWVPEVKHF--CPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDG-RAMAV-RIQAYDYL 177 (207)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHH--STTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHH-HHHHH-HTTCSEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHH-HHHHH-hcCCCEEE
Confidence 99999999888887 4555555332 14799999999999974322222222221111000000 00000 00123789
Q ss_pred EEeeecCCChhHHHHhhhhhc
Q 029453 172 MCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 172 ~~Sa~~~~gi~~~~~~i~~~l 192 (193)
++||++|.|+++++++|.+.+
T Consensus 178 ~~SA~~g~gi~el~~~l~~~i 198 (207)
T 2fv8_A 178 ECSAKTKEGVREVFETATRAA 198 (207)
T ss_dssp ECCTTTCTTHHHHHHHHHHHH
T ss_pred EeeCCCCCCHHHHHHHHHHHH
Confidence 999999999999999998753
No 94
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.95 E-value=2.6e-28 Score=170.93 Aligned_cols=154 Identities=16% Similarity=0.218 Sum_probs=107.8
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce---eEEEeCCeEEEEEEcCChhhhHHhHHhhhccCCEEEE
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPTS---EELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVY 93 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~---~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 93 (193)
.+.+||+++|++|||||||++++.++.+.. ..+|.+... ..+......+.+|||||++.+...+..++..+|++++
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 85 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 85 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CBCCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEEE
Confidence 467999999999999999999999887653 333333211 1122234567799999999998888889999999999
Q ss_pred EEeCCChhhHHHHH-HHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC------------HHH---HHHhhCCCccccCCCc
Q 029453 94 LIDAYDKERFSESK-RELDALLSDEALADVPFLILGNKIDIPYAAS------------EDE---LRYHMGLTNFTTGKGN 157 (193)
Q Consensus 94 v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~------------~~~---~~~~~~~~~~~~~~~~ 157 (193)
|+|++++.++.... .|+..+.... .+.|+++|+||+|+.+... .++ +...+
T Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~----------- 152 (182)
T 3bwd_D 86 AFSLISKASYENVSKKWIPELKHYA--PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLI----------- 152 (182)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHC--TTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHH-----------
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHc-----------
Confidence 99999999998887 5666554322 4799999999999864321 111 11111
Q ss_pred ccCCCCCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 158 VNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 158 ~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
...+++++||++|.|++++|++|.+.+
T Consensus 153 --------~~~~~~~~Sa~~~~gi~~l~~~l~~~i 179 (182)
T 3bwd_D 153 --------GAPAYIECSSKSQENVKGVFDAAIRVV 179 (182)
T ss_dssp --------TCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred --------CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 113789999999999999999998754
No 95
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.95 E-value=5.9e-28 Score=173.39 Aligned_cols=157 Identities=16% Similarity=0.210 Sum_probs=116.6
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce-eEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEEE
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPTS-EELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVVY 93 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 93 (193)
.+.+||+++|++|||||||++++.++.+.. +.+|.+... ..+..++ ..+.+|||||++.+...+..++..+|++++
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~il 86 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL 86 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEEE
Confidence 467999999999999999999999888653 344554333 2344443 689999999999998888889999999999
Q ss_pred EEeCCChhhHHHHH-HHHHHHHhCCCCCCCcEEEEeeCCCCCCCC----------CHHHHHHhhCCCccccCCCcccCCC
Q 029453 94 LIDAYDKERFSESK-RELDALLSDEALADVPFLILGNKIDIPYAA----------SEDELRYHMGLTNFTTGKGNVNLDN 162 (193)
Q Consensus 94 v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (193)
|+|+++++++.... .|+..+.... .+.|+++|+||+|+.... ..++...... ..
T Consensus 87 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~-~~------------ 151 (212)
T 2j0v_A 87 AFSLISKASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRK-QI------------ 151 (212)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHC--TTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHH-HH------------
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHH-Hc------------
Confidence 99999999998876 5666664332 479999999999986431 1222111110 00
Q ss_pred CCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 163 TNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 163 ~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
...+++++||++|.|++++|++|.+.+
T Consensus 152 ---~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 178 (212)
T 2j0v_A 152 ---GAAAYIECSSKTQQNVKAVFDTAIKVV 178 (212)
T ss_dssp ---TCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ---CCceEEEccCCCCCCHHHHHHHHHHHH
Confidence 113789999999999999999998753
No 96
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.95 E-value=3.8e-28 Score=172.83 Aligned_cols=154 Identities=21% Similarity=0.324 Sum_probs=113.2
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCcccc-CC--CCCcceeEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEE
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQH-QP--TQYPTSEELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVV 92 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~-~~--t~~~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 92 (193)
.+.+||+++|.+|||||||++++.+..+... .+ +.......+..++ ..+.+|||||++.+...+..++..+|+++
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 110 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 110 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEE
Confidence 4679999999999999999999998876532 23 3334455566665 67999999999998888888899999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCC-----CHHHHHHhhCCCccccCCCcccCCCCCCcc
Q 029453 93 YLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAA-----SEDELRYHMGLTNFTTGKGNVNLDNTNVRP 167 (193)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (193)
+|+|++++.++.....|+..+.. ....+.|+++|+||+|+.... ...++...++
T Consensus 111 ~v~d~~~~~s~~~~~~~~~~i~~-~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~-------------------- 169 (199)
T 3l0i_B 111 VVYDVTDQESFNNVKQWLQEIDR-YASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLG-------------------- 169 (199)
T ss_dssp ECC-CCCSHHHHHHHHHHHHHHS-CC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTT--------------------
T ss_pred EEEECCCHHHHHHHHHHHHHHHH-hccCCCCEEEEEECccCCccccCCHHHHHHHHHHcC--------------------
Confidence 99999999999999888888753 334579999999999996321 1112222222
Q ss_pred EEEEEEeeecCCChhHHHHhhhhhc
Q 029453 168 LEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 168 ~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
++++++||++|.|++++|++|.+.+
T Consensus 170 ~~~~~vSA~~g~gv~~l~~~l~~~l 194 (199)
T 3l0i_B 170 IPFLETSAKNATNVEQSFMTMAAEI 194 (199)
T ss_dssp CCBCCCCC---HHHHHHHHHHTTTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3568999999999999999998865
No 97
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.94 E-value=4.6e-27 Score=168.12 Aligned_cols=158 Identities=20% Similarity=0.248 Sum_probs=116.2
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce-eEEEeC--CeEEEEEEcCChhhhHHhHHhhhccCCEEE
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPTS-EELSIG--KIKFKAFDLGGHQMARRVWKDYYAKVDAVV 92 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 92 (193)
..+.+||+++|++|||||||++++.+..+.. +.+|.+... ..+..+ ...+.+|||||++.+...+..++..+|+++
T Consensus 25 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 104 (205)
T 1gwn_A 25 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 104 (205)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEE
Confidence 4578999999999999999999999988764 344544332 233333 368999999999998888888899999999
Q ss_pred EEEeCCChhhHHHH-HHHHHHHHhCCCCCCCcEEEEeeCCCCCCC--------------CCHHHHHHhhCCCccccCCCc
Q 029453 93 YLIDAYDKERFSES-KRELDALLSDEALADVPFLILGNKIDIPYA--------------ASEDELRYHMGLTNFTTGKGN 157 (193)
Q Consensus 93 ~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~--------------~~~~~~~~~~~~~~~~~~~~~ 157 (193)
+|+|+++++++... ..|+..+.... .+.|+++|+||+|+... ...++...... ..
T Consensus 105 lv~D~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~------- 174 (205)
T 1gwn_A 105 ICFDISRPETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAK-QI------- 174 (205)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC--TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHH-HH-------
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHC--CCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHH-Hc-------
Confidence 99999999999887 56666654322 47999999999999632 11111111000 00
Q ss_pred ccCCCCCCccEEEEEEeee-cCCChhHHHHhhhhhc
Q 029453 158 VNLDNTNVRPLEVFMCSIV-RKMGYGEGFKWLSQYI 192 (193)
Q Consensus 158 ~~~~~~~~~~~~~~~~Sa~-~~~gi~~~~~~i~~~l 192 (193)
....++++||+ ++.|++++|++|.+.+
T Consensus 175 --------~~~~~~e~SAk~~~~gv~~lf~~l~~~~ 202 (205)
T 1gwn_A 175 --------GAATYIECSALQSENSVRDIFHVATLAC 202 (205)
T ss_dssp --------TCSEEEECCTTTCHHHHHHHHHHHHHHH
T ss_pred --------CCCEEEEeeeccCCcCHHHHHHHHHHHH
Confidence 12478999999 6899999999998753
No 98
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.94 E-value=1e-25 Score=155.73 Aligned_cols=148 Identities=30% Similarity=0.350 Sum_probs=107.7
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCcc-ccCC--CCCcceeEEEeCCeEEEEEEcCChhhhH------HhHHhhhc--c
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERLV-QHQP--TQYPTSEELSIGKIKFKAFDLGGHQMAR------RVWKDYYA--K 87 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~------~~~~~~~~--~ 87 (193)
+.++|+++|++|||||||++++.+..+. ...+ |.......+.+++..+.+|||||++.+. .....++. .
T Consensus 2 ~~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T 2wji_A 2 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEK 81 (165)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETTEEEEEEECCCCSCSSSSSHHHHHHHHHHHHHC
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcchhHHHHHHHHhcCC
Confidence 4689999999999999999999987643 2333 3444556677788999999999987653 33344554 7
Q ss_pred CCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CC--CHHHHHHhhCCCccccCCCcccCCCC
Q 029453 88 VDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY--AA--SEDELRYHMGLTNFTTGKGNVNLDNT 163 (193)
Q Consensus 88 ~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (193)
++++++|+|+++.+. ...|+..+.. .+.|+++|+||+|+.. .. ..+++...++
T Consensus 82 ~~~~i~v~D~~~~~~---~~~~~~~~~~----~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~---------------- 138 (165)
T 2wji_A 82 PDLVVNIVDATALER---NLYLTLQLME----MGANLLLALNKMDLAKSLGIEIDVDKLEKILG---------------- 138 (165)
T ss_dssp CSEEEEEEETTCHHH---HHHHHHHHHH----TTCCEEEEEECHHHHHHTTCCCCHHHHHHHHT----------------
T ss_pred CCEEEEEecCCchhH---hHHHHHHHHh----cCCCEEEEEEchHhccccChhhHHHHHHHHhC----------------
Confidence 999999999988643 3445555543 3789999999999852 11 2233433332
Q ss_pred CCccEEEEEEeeecCCChhHHHHhhhhhcC
Q 029453 164 NVRPLEVFMCSIVRKMGYGEGFKWLSQYIK 193 (193)
Q Consensus 164 ~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l~ 193 (193)
++++++||++|.|++++|++|.+.++
T Consensus 139 ----~~~~~~SA~~~~~v~~l~~~l~~~~~ 164 (165)
T 2wji_A 139 ----VKVVPLSAAKKMGIEELKKAISIAVK 164 (165)
T ss_dssp ----SCEEECBGGGTBSHHHHHHHHHHHTT
T ss_pred ----CCEEEEEcCCCCCHHHHHHHHHHHhh
Confidence 35799999999999999999988763
No 99
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.94 E-value=5.9e-26 Score=160.75 Aligned_cols=158 Identities=15% Similarity=0.175 Sum_probs=110.0
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCC--ccccCCCCCcc--eeEEEeCCe--EEEEEEcCChhh-hHHhHHhhhccCCE
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDER--LVQHQPTQYPT--SEELSIGKI--KFKAFDLGGHQM-ARRVWKDYYAKVDA 90 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~--~~~~~~t~~~~--~~~~~~~~~--~~~~~D~~g~~~-~~~~~~~~~~~~d~ 90 (193)
.+.+||+++|.+|||||||++++.+.. +....++.+.. ...+.+++. .+.+|||+|.+. +......++..+|+
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~ 83 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA 83 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCE
Confidence 567899999999999999999998643 23332333222 344555554 567899999765 33344556778999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhCCCccccCCCcccCCCCCCccE
Q 029453 91 VVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY--AASEDELRYHMGLTNFTTGKGNVNLDNTNVRPL 168 (193)
Q Consensus 91 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (193)
+++|+|+++.+++.....|+..+.......+.|+++|+||+|+.. ....++... +... ..+
T Consensus 84 ~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~-~a~~----------------~~~ 146 (192)
T 2cjw_A 84 YLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRA-XAVV----------------FDX 146 (192)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHH-HHHH----------------TTC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHH-HHHH----------------hCC
Confidence 999999999999998888877765433335799999999999863 223222111 1000 124
Q ss_pred EEEEEeeecCCChhHHHHhhhhhc
Q 029453 169 EVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 169 ~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
+++++||++|.|++++|++|.+.+
T Consensus 147 ~~~e~SA~~g~~v~~lf~~l~~~~ 170 (192)
T 2cjw_A 147 KFIETSAAVQHNVKELFEGIVRQV 170 (192)
T ss_dssp EEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ceEEeccccCCCHHHHHHHHHHHH
Confidence 789999999999999999998754
No 100
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.94 E-value=1.7e-26 Score=158.56 Aligned_cols=148 Identities=18% Similarity=0.198 Sum_probs=105.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc--cCC--CCCcceeEEEeCCeEEEEEEcCChhh-------hHHhHHhhhccCC
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLVQ--HQP--TQYPTSEELSIGKIKFKAFDLGGHQM-------ARRVWKDYYAKVD 89 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~~--~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~-------~~~~~~~~~~~~d 89 (193)
+||+++|++|||||||++++.+..... ..+ +.......+...+..+.+|||||+.. +...+..+++.+|
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 81 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDAE 81 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTCS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCceEEEEECCCCCCccchHHHHHHHHHHHHHhCC
Confidence 589999999999999999999887432 222 33445566777888999999999876 4555667788999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEE
Q 029453 90 AVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLE 169 (193)
Q Consensus 90 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (193)
++++|+|++++.+. ...++..++.. .+.|+++|+||+|+... .++..+.. .. ...+
T Consensus 82 ~~i~v~d~~~~~~~--~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~--~~~~~~~~--~~---------------~~~~ 137 (161)
T 2dyk_A 82 VVLFAVDGRAELTQ--ADYEVAEYLRR---KGKPVILVATKVDDPKH--ELYLGPLY--GL---------------GFGD 137 (161)
T ss_dssp EEEEEEESSSCCCH--HHHHHHHHHHH---HTCCEEEEEECCCSGGG--GGGCGGGG--GG---------------SSCS
T ss_pred EEEEEEECCCcccH--hHHHHHHHHHh---cCCCEEEEEECcccccc--hHhHHHHH--hC---------------CCCC
Confidence 99999999985322 22333334333 47899999999999643 11111110 00 1125
Q ss_pred EEEEeeecCCChhHHHHhhhhhc
Q 029453 170 VFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 170 ~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
++++||++|.|+++++++|.+.+
T Consensus 138 ~~~~Sa~~~~gv~~l~~~l~~~l 160 (161)
T 2dyk_A 138 PIPTSSEHARGLEELLEAIWERL 160 (161)
T ss_dssp CEECBTTTTBSHHHHHHHHHHHC
T ss_pred eEEEecccCCChHHHHHHHHHhC
Confidence 79999999999999999998876
No 101
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.94 E-value=1.3e-26 Score=164.55 Aligned_cols=167 Identities=17% Similarity=0.185 Sum_probs=112.0
Q ss_pred CCCCcccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCc--ceeEEE---eCCeEEEEEEcCChhhhHHhH---Hhhhc
Q 029453 15 GLWQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYP--TSEELS---IGKIKFKAFDLGGHQMARRVW---KDYYA 86 (193)
Q Consensus 15 ~~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~--~~~~~~---~~~~~~~~~D~~g~~~~~~~~---~~~~~ 86 (193)
...++.+||+++|.+|||||||++++.+........+... ...... .....+.+|||||++.+.... ..+++
T Consensus 15 ~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~ 94 (196)
T 3llu_A 15 YFQGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFR 94 (196)
T ss_dssp -----CCEEEEEESTTSSHHHHHHHHHSCCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHHH
T ss_pred cccCcceEEEEECCCCCCHHHHHHHHHhcCCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccccc
Confidence 4466889999999999999999998887543332222222 222222 345789999999999887665 78899
Q ss_pred cCCEEEEEEeCCCh--hhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCH----HHHHHhhCCCccccCCCcccC
Q 029453 87 KVDAVVYLIDAYDK--ERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASE----DELRYHMGLTNFTTGKGNVNL 160 (193)
Q Consensus 87 ~~d~ii~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 160 (193)
.+|++++|+|++++ +++..+..|+..+... ..+.|+++|+||+|+.+.... .++.............
T Consensus 95 ~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~----- 167 (196)
T 3llu_A 95 GTGALIYVIDAQDDYMEALTRLHITVSKAYKV--NPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGL----- 167 (196)
T ss_dssp TCSEEEEEEETTSCCHHHHHHHHHHHHHHHHH--CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTC-----
T ss_pred cCCEEEEEEECCCchHHHHHHHHHHHHHHHhc--CCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhh-----
Confidence 99999999999997 5666677777766322 258999999999998642211 1111111111100000
Q ss_pred CCCCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 161 DNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 161 ~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
....+.++++||++ .|++++|+.|.+.+
T Consensus 168 ---~~~~~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 168 ---EKLHLSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp ---TTSCEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred ---hcCCcceEEEEech-hhHHHHHHHHHHHh
Confidence 01346899999999 99999999998765
No 102
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.93 E-value=4.5e-26 Score=160.21 Aligned_cols=159 Identities=13% Similarity=0.159 Sum_probs=110.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC--Ccc-ccCCCCCcceeEEEe-------CCeEEEEEEcCChhhhHHhHHhhhccCC
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDE--RLV-QHQPTQYPTSEELSI-------GKIKFKAFDLGGHQMARRVWKDYYAKVD 89 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~--~~~-~~~~t~~~~~~~~~~-------~~~~~~~~D~~g~~~~~~~~~~~~~~~d 89 (193)
++||+++|++|||||||++++.+. .+. .+.+|.+........ ....+.+|||+|++++...+..++..++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 589999999999999999999985 333 234555544333221 3568999999999999888888889999
Q ss_pred EEEEEEeCCCh-hhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHH----HHHHhhCCCccccCCCcccCCCCC
Q 029453 90 AVVYLIDAYDK-ERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASED----ELRYHMGLTNFTTGKGNVNLDNTN 164 (193)
Q Consensus 90 ~ii~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 164 (193)
++++|+|++++ .++.....|+..+.... .+.|+++|+||+|+....... +....+.... ..
T Consensus 82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~------------~~ 147 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAMKPWLFNIKARA--SSSPVILVGTHLDVSDEKQRKACMSKITKELLNKR------------GF 147 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHHHHHHHHHHHC--TTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCT------------TS
T ss_pred EEEEEEeCCcchhHHHHHHHHHHHHHhhC--CCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhc------------CC
Confidence 99999999987 57888888888775432 478999999999996422211 1112221111 00
Q ss_pred CccEEEEEEeeecCC-ChhHHHHhhhhhc
Q 029453 165 VRPLEVFMCSIVRKM-GYGEGFKWLSQYI 192 (193)
Q Consensus 165 ~~~~~~~~~Sa~~~~-gi~~~~~~i~~~l 192 (193)
....+++++||+++. |++++++.|.+.+
T Consensus 148 ~~~~~~~~~Sa~~~~~~~~~l~~~i~~~~ 176 (184)
T 2zej_A 148 PAIRDYHFVNATEESDALAKLRKTIINES 176 (184)
T ss_dssp CEEEEEEECCTTSCCHHHHHHHHHHHHHH
T ss_pred cchhheEEEecccCchhHHHHHHHHHHHH
Confidence 012358999999996 9999999987643
No 103
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.88 E-value=5e-28 Score=172.81 Aligned_cols=173 Identities=16% Similarity=0.255 Sum_probs=117.0
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHHhcCCcccc-CCCCCcc-eeEEEe--CCeEEEEEEcCChhhhHHhHHhhhccCCEE
Q 029453 16 LWQKEAKILFLGLDNSGKTTLLHMLKDERLVQH-QPTQYPT-SEELSI--GKIKFKAFDLGGHQMARRVWKDYYAKVDAV 91 (193)
Q Consensus 16 ~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~-~~t~~~~-~~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~i 91 (193)
...+.+||+++|.+|||||||++++.++.+... .+|.... ...+.. ....+.+|||||++++...+..++..+|++
T Consensus 26 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i 105 (204)
T 3th5_A 26 FQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVF 105 (204)
Confidence 346789999999999999999999998776532 3333222 122222 345677999999999998888899999999
Q ss_pred EEEEeCCChhhHHHHH-HHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEE
Q 029453 92 VYLIDAYDKERFSESK-RELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEV 170 (193)
Q Consensus 92 i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (193)
++|+|++++.++.... .|+..+.. . ..+.|+++|+||+|+.......+............. ....... .....++
T Consensus 106 ilv~D~~~~~s~~~~~~~~~~~l~~-~-~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~-~~~~~~~-~~~~~~~ 181 (204)
T 3th5_A 106 LICFSLVSPASFENVRAKWYPEVRH-H-CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYP-QGLAMAK-EIGAVKY 181 (204)
Confidence 9999999998888876 55555432 2 137999999999999743222211111110010000 0000000 0122378
Q ss_pred EEEeeecCCChhHHHHhhhhhc
Q 029453 171 FMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 171 ~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
+++||++|.|+++++++|.+.+
T Consensus 182 ~~vSA~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 182 LECSALTQRGLKTVFDEAIRAV 203 (204)
Confidence 9999999999999999998754
No 104
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.93 E-value=3.1e-25 Score=161.03 Aligned_cols=160 Identities=15% Similarity=0.140 Sum_probs=109.1
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccc-cCC--CCCcceeEEEeCCeEEEEEEcCCh------hhh---HHhHHhh
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQP--TQYPTSEELSIGKIKFKAFDLGGH------QMA---RRVWKDY 84 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~--t~~~~~~~~~~~~~~~~~~D~~g~------~~~---~~~~~~~ 84 (193)
..+.++|+++|.+|||||||++++.+..+.. ..+ |...........+..+.+|||||+ +.. ...+..+
T Consensus 26 ~~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 105 (228)
T 2qu8_A 26 NPHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTTITAL 105 (228)
T ss_dssp CTTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHHHHHHh
Confidence 3578999999999999999999999887652 111 334445556667889999999998 331 1223445
Q ss_pred hccCCEEEEEEeCCChhhHH--HHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC--HHH--HHHhhCCCccccCCCcc
Q 029453 85 YAKVDAVVYLIDAYDKERFS--ESKRELDALLSDEALADVPFLILGNKIDIPYAAS--EDE--LRYHMGLTNFTTGKGNV 158 (193)
Q Consensus 85 ~~~~d~ii~v~d~~~~~~~~--~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~--~~~--~~~~~~~~~~~~~~~~~ 158 (193)
...+|++++|+|++++.++. ....++..+... ..+.|+++|+||+|+..... .+. ....+....
T Consensus 106 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-------- 175 (228)
T 2qu8_A 106 AHINGVILFIIDISEQCGLTIKEQINLFYSIKSV--FSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNV-------- 175 (228)
T ss_dssp HTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTC--C-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHC--------
T ss_pred hccccEEEEEEecccccCcchHHHHHHHHHHHHh--hcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhc--------
Confidence 67889999999999986654 233455555332 24799999999999974322 211 111110000
Q ss_pred cCCCCCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 159 NLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 159 ~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
...++++++||++|.|++++|++|.+.+
T Consensus 176 ------~~~~~~~~~SA~~g~gi~~l~~~l~~~i 203 (228)
T 2qu8_A 176 ------KNPIKFSSFSTLTGVGVEQAKITACELL 203 (228)
T ss_dssp ------CSCEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ------CCCceEEEEecccCCCHHHHHHHHHHHH
Confidence 0126899999999999999999998754
No 105
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.93 E-value=6.8e-26 Score=157.75 Aligned_cols=150 Identities=19% Similarity=0.225 Sum_probs=107.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCcc--ccCC--CCCcceeEEEeCCeEEEEEEcCChhhh----HH----hHHhhhc
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERLV--QHQP--TQYPTSEELSIGKIKFKAFDLGGHQMA----RR----VWKDYYA 86 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~----~~----~~~~~~~ 86 (193)
+..+|+++|++|||||||++++.+.... ...+ |.......+.+++..+.+|||||++.+ .. ....++.
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 82 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIE 82 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEEEEEECCCcccchhHHHHHHHHHHHHHHH
Confidence 5679999999999999999999987643 2222 334455677788888999999997542 11 1123578
Q ss_pred cCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCc
Q 029453 87 KVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVR 166 (193)
Q Consensus 87 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (193)
.+|++++|+|++++.++. ...|+..+... ...++|+++|+||+|+..... .... ..
T Consensus 83 ~ad~~i~v~D~~~~~s~~-~~~~~~~~~~~-~~~~~p~ilv~NK~Dl~~~~~----------~~~~------------~~ 138 (172)
T 2gj8_A 83 QADRVLFMVDGTTTDAVD-PAEIWPEFIAR-LPAKLPITVVRNKADITGETL----------GMSE------------VN 138 (172)
T ss_dssp TCSEEEEEEETTTCCCCS-HHHHCHHHHHH-SCTTCCEEEEEECHHHHCCCC----------EEEE------------ET
T ss_pred hCCEEEEEEECCCCCCHH-HHHHHHHHHHh-cccCCCEEEEEECccCCcchh----------hhhh------------cc
Confidence 899999999999876654 33455555432 234799999999999853210 0000 02
Q ss_pred cEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 167 PLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 167 ~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
..+++++||++|.|++++|++|.+.+
T Consensus 139 ~~~~~~~SA~~g~gv~~l~~~l~~~~ 164 (172)
T 2gj8_A 139 GHALIRLSARTGEGVDVLRNHLKQSM 164 (172)
T ss_dssp TEEEEECCTTTCTTHHHHHHHHHHHC
T ss_pred CCceEEEeCCCCCCHHHHHHHHHHHh
Confidence 36899999999999999999998764
No 106
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.93 E-value=5.5e-25 Score=166.35 Aligned_cols=158 Identities=20% Similarity=0.200 Sum_probs=116.5
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccccCC----CCCcceeEEEeC-CeEEEEEEcCChhh----------hHHhH
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQP----TQYPTSEELSIG-KIKFKAFDLGGHQM----------ARRVW 81 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~----t~~~~~~~~~~~-~~~~~~~D~~g~~~----------~~~~~ 81 (193)
..+.-.|+++|.+|||||||+|++.+.+.....+ |..........+ +..+.+|||||+.. +....
T Consensus 7 ~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~ 86 (308)
T 3iev_A 7 HMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIA 86 (308)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHHH
Confidence 4566799999999999999999999988653322 444455566777 89999999999843 33555
Q ss_pred HhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC-CCCCHHHHHHhhCCCccccCCCcccC
Q 029453 82 KDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIP-YAASEDELRYHMGLTNFTTGKGNVNL 160 (193)
Q Consensus 82 ~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (193)
..++..+|++++|+|++++.+......|+..+.. .+.|+++|+||+|+. ......+....+....
T Consensus 87 ~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~----~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~---------- 152 (308)
T 3iev_A 87 KQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP----LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKH---------- 152 (308)
T ss_dssp HHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG----GCCCEEEEEECGGGSSSGGGGHHHHHHHHHHC----------
T ss_pred HHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh----cCCCEEEEEECccCCCCHHHHHHHHHHHHHhc----------
Confidence 6678899999999999988766665555555533 478999999999997 3333333333222111
Q ss_pred CCCCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 161 DNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 161 ~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
....+++++||++|.|+++++++|.+.+
T Consensus 153 ----~~~~~i~~vSA~~g~gv~~L~~~l~~~l 180 (308)
T 3iev_A 153 ----PELTEIVPISALKGANLDELVKTILKYL 180 (308)
T ss_dssp ----TTCCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred ----cCCCeEEEEeCCCCCCHHHHHHHHHHhC
Confidence 0124789999999999999999998765
No 107
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.93 E-value=5.6e-25 Score=165.59 Aligned_cols=154 Identities=21% Similarity=0.201 Sum_probs=111.0
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCcccc--CC--CCCcceeEEEeCCeEEEEEEcCChhh--------hHHhHHhhh
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQH--QP--TQYPTSEELSIGKIKFKAFDLGGHQM--------ARRVWKDYY 85 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~--~~--t~~~~~~~~~~~~~~~~~~D~~g~~~--------~~~~~~~~~ 85 (193)
.+..+|+++|.+|||||||+|++.+.+.... .+ |..........++..+.+|||||+.. +......++
T Consensus 5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l 84 (301)
T 1wf3_A 5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEAL 84 (301)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHHHH
Confidence 4567899999999999999999999886532 22 33334445567789999999999765 445556778
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC-HHHHHHhhCCCccccCCCcccCCCCC
Q 029453 86 AKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAAS-EDELRYHMGLTNFTTGKGNVNLDNTN 164 (193)
Q Consensus 86 ~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (193)
..+|++++|+|++++.+. ...++...+.... .+.|+++|+||+|+..... ..+....+ .
T Consensus 85 ~~ad~il~VvD~~~~~~~--~~~~i~~~l~~~~-~~~p~ilV~NK~Dl~~~~~~~~~~~~~~---~-------------- 144 (301)
T 1wf3_A 85 ADVNAVVWVVDLRHPPTP--EDELVARALKPLV-GKVPILLVGNKLDAAKYPEEAMKAYHEL---L-------------- 144 (301)
T ss_dssp SSCSEEEEEEETTSCCCH--HHHHHHHHHGGGT-TTSCEEEEEECGGGCSSHHHHHHHHHHT---S--------------
T ss_pred hcCCEEEEEEECCCCCCh--HHHHHHHHHHhhc-CCCCEEEEEECcccCCchHHHHHHHHHh---c--------------
Confidence 899999999999886332 2344444433321 4799999999999974322 22222222 1
Q ss_pred CccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 165 VRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 165 ~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
...+++++||++|.|+++++++|.+.+
T Consensus 145 -~~~~~~~iSA~~g~gv~~l~~~l~~~l 171 (301)
T 1wf3_A 145 -PEAEPRMLSALDERQVAELKADLLALM 171 (301)
T ss_dssp -TTSEEEECCTTCHHHHHHHHHHHHTTC
T ss_pred -CcCcEEEEeCCCCCCHHHHHHHHHHhc
Confidence 224689999999999999999998754
No 108
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.93 E-value=1.6e-25 Score=158.31 Aligned_cols=159 Identities=20% Similarity=0.264 Sum_probs=107.6
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccee-EEEeCCeEEEEEEcCC----------hhhhHHhHHhhhc
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSE-ELSIGKIKFKAFDLGG----------HQMARRVWKDYYA 86 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~D~~g----------~~~~~~~~~~~~~ 86 (193)
...++|+++|++|||||||++++.+.......++.+.+.. .....+..+.+||||| ++.+...+..++.
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 100 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLVNSKYYFVDLPGYGYAKVSKKERMLWKRLVEDYFK 100 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEEETTTEEEEECCCBSSSCCCHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEEECCcEEEEECCCCccccCChhhHHHHHHHHHHHHh
Confidence 4678999999999999999999999885554444433221 1222244688999999 6667777776666
Q ss_pred cC---CEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCC
Q 029453 87 KV---DAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNT 163 (193)
Q Consensus 87 ~~---d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (193)
.+ +++++|+|+++..+.... .+...+.. .+.|+++|+||+|+..........+...... .
T Consensus 101 ~~~~~~~vi~v~d~~~~~~~~~~--~~~~~~~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~-~----------- 163 (195)
T 3pqc_A 101 NRWSLQMVFLLVDGRIPPQDSDL--MMVEWMKS---LNIPFTIVLTKMDKVKMSERAKKLEEHRKVF-S----------- 163 (195)
T ss_dssp HCTTEEEEEEEEETTSCCCHHHH--HHHHHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHH-H-----------
T ss_pred cCcCceEEEEEecCCCCCCHHHH--HHHHHHHH---cCCCEEEEEEChhcCChHHHHHHHHHHHHHH-h-----------
Confidence 55 999999999875332221 12222222 2789999999999975443333322221111 0
Q ss_pred CCccEEEEEEeeecCCChhHHHHhhhhhcC
Q 029453 164 NVRPLEVFMCSIVRKMGYGEGFKWLSQYIK 193 (193)
Q Consensus 164 ~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l~ 193 (193)
....++++++||++|.|++++|++|.+.+.
T Consensus 164 ~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~ 193 (195)
T 3pqc_A 164 KYGEYTIIPTSSVTGEGISELLDLISTLLK 193 (195)
T ss_dssp SSCCSCEEECCTTTCTTHHHHHHHHHHHHC
T ss_pred hcCCCceEEEecCCCCCHHHHHHHHHHHhh
Confidence 002257899999999999999999988753
No 109
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.93 E-value=2.8e-25 Score=157.22 Aligned_cols=154 Identities=18% Similarity=0.250 Sum_probs=105.2
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCcc-ccCCCCCcc--eeEEEeCCeEEEEEEcCC----------hhhhHHhHHhh
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLV-QHQPTQYPT--SEELSIGKIKFKAFDLGG----------HQMARRVWKDY 84 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~--~~~~~~~~~~~~~~D~~g----------~~~~~~~~~~~ 84 (193)
.+.++|+++|++|||||||++++.+..+. ...++.+.+ ......+ ..+.+||||| ++.+...+..+
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 99 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIN-DELHFVDVPGYGFAKVSKSEREAWGRMIETY 99 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEET-TTEEEEECCCBCCCSSCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEEC-CcEEEEECCCCCccccCHHHHHHHHHHHHHH
Confidence 46799999999999999999999988743 333333222 2223333 3689999999 77777777777
Q ss_pred hccC---CEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHH----HHHhhCCCccccCCCc
Q 029453 85 YAKV---DAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDE----LRYHMGLTNFTTGKGN 157 (193)
Q Consensus 85 ~~~~---d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~----~~~~~~~~~~~~~~~~ 157 (193)
+..+ |++++|+|++++.+..... +...+.. .+.|+++|+||+|+.......+ +.+.+...
T Consensus 100 ~~~~~~~~~~i~v~d~~~~~~~~~~~--~~~~~~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~-------- 166 (195)
T 1svi_A 100 ITTREELKAVVQIVDLRHAPSNDDVQ--MYEFLKY---YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNID-------- 166 (195)
T ss_dssp HHHCTTEEEEEEEEETTSCCCHHHHH--HHHHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCC--------
T ss_pred HhhhhcCCEEEEEEECCCCCCHHHHH--HHHHHHH---cCCCEEEEEECcccCChHHHHHHHHHHHHHHccc--------
Confidence 7766 9999999999875554422 2222222 4789999999999975433322 33223211
Q ss_pred ccCCCCCCccEEEEEEeeecCCChhHHHHhhhhhcC
Q 029453 158 VNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYIK 193 (193)
Q Consensus 158 ~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l~ 193 (193)
...+++++||++|.|+++++++|.+.++
T Consensus 167 --------~~~~~~~~Sa~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 167 --------PEDELILFSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp --------TTSEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred --------CCCceEEEEccCCCCHHHHHHHHHHHhc
Confidence 2358999999999999999999988753
No 110
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.93 E-value=7.6e-26 Score=159.38 Aligned_cols=157 Identities=17% Similarity=0.118 Sum_probs=104.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcceeEEEeCCeEEEEEEcCC-----------hhhhHHhHHhhhcc-
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPTSEELSIGKIKFKAFDLGG-----------HQMARRVWKDYYAK- 87 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~D~~g-----------~~~~~~~~~~~~~~- 87 (193)
+||+++|++|||||||++++.+..+.. ..++........... .+.+||||| ++.+...+..++..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWK--NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDN 79 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEEEET--TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeEEEecC--CEEEEECCCccccccCCHHHHHHHHHHHHHHHHhh
Confidence 689999999999999999999887653 334444444445554 688999999 67777776666665
Q ss_pred CCEEEEEEeCCChhhHHHH-HHHHHH--------HHhCCCCCCCcEEEEeeCCCCCCCC--CHHHHHHhhCCCccccCCC
Q 029453 88 VDAVVYLIDAYDKERFSES-KRELDA--------LLSDEALADVPFLILGNKIDIPYAA--SEDELRYHMGLTNFTTGKG 156 (193)
Q Consensus 88 ~d~ii~v~d~~~~~~~~~~-~~~~~~--------~~~~~~~~~~pviiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~ 156 (193)
++++++|+++.+..++... ..|... +.......+.|+++|+||+|+.... ..+++...++..+.
T Consensus 80 ~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~----- 154 (190)
T 2cxx_A 80 AKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNVQEVINFLAEKFEVPLS----- 154 (190)
T ss_dssp GGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCHHHHHHHHHHHHTCCGG-----
T ss_pred hccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcHHHHHHHHHHHhhhhhh-----
Confidence 5544444454444455444 233221 1111111479999999999997543 23335555555330
Q ss_pred cccCCCCCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 157 NVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 157 ~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
.....++++||++|.|++++|++|.+.+
T Consensus 155 --------~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 182 (190)
T 2cxx_A 155 --------EIDKVFIPISAKFGDNIERLKNRIFEVI 182 (190)
T ss_dssp --------GHHHHEEECCTTTCTTHHHHHHHHHHHH
T ss_pred --------ccCCcEEEEecCCCCCHHHHHHHHHHhc
Confidence 0124689999999999999999998754
No 111
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.92 E-value=5.6e-25 Score=166.29 Aligned_cols=156 Identities=17% Similarity=0.233 Sum_probs=115.1
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCcc----ccCCCCCcceeEEEe-CCeEEEEEEcCChhhh-----HHhHHhhhccC
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERLV----QHQPTQYPTSEELSI-GKIKFKAFDLGGHQMA-----RRVWKDYYAKV 88 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~~----~~~~t~~~~~~~~~~-~~~~~~~~D~~g~~~~-----~~~~~~~~~~~ 88 (193)
..+||+++|++|||||||++++.++... ...+|.+.....+.+ ++..+.+|||||++.+ ...+..+++.+
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~a 81 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFMENYFTKQKDHIFQMV 81 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHHHHHHHTTTHHHHHTTC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcHHHhhhhhhhHHHHHhccC
Confidence 4689999999999999999999887432 244577777776665 5789999999999988 56777788999
Q ss_pred CEEEEEEeCCChhhHHHHHHHHHHHHhC-CCCCCCcEEEEeeCCCCCCCCCHH--------H---HHHhhCCCccccCCC
Q 029453 89 DAVVYLIDAYDKERFSESKRELDALLSD-EALADVPFLILGNKIDIPYAASED--------E---LRYHMGLTNFTTGKG 156 (193)
Q Consensus 89 d~ii~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~~pviiv~nK~Dl~~~~~~~--------~---~~~~~~~~~~~~~~~ 156 (193)
|++++|+|+++++++..+..|...+... ...++.|+++|+||+|+....... + +...++.
T Consensus 82 d~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~-------- 153 (307)
T 3r7w_A 82 QVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGF-------- 153 (307)
T ss_dssp SEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTC--------
T ss_pred CEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCC--------
Confidence 9999999999998888776553333221 112579999999999997421221 1 1111111
Q ss_pred cccCCCCCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 157 NVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 157 ~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
..++++++||++ .|+.++|..+.+.+
T Consensus 154 ---------~~~~~~~tSa~~-~~i~e~~~~iv~~l 179 (307)
T 3r7w_A 154 ---------PNLIGFPTSIWD-ESLYKAWSQIVCSL 179 (307)
T ss_dssp ---------CSCEEEECCTTS-SHHHHHHHHHHHTT
T ss_pred ---------CCeEEEEeeecC-ChHHHHHHHHHHHH
Confidence 136899999999 89999998887643
No 112
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.92 E-value=2.9e-25 Score=163.68 Aligned_cols=144 Identities=22% Similarity=0.265 Sum_probs=106.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcc-ccCC--CCCcceeEEEeCCeEEEEEEcCChhhhHH----------hHHhhh--
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLV-QHQP--TQYPTSEELSIGKIKFKAFDLGGHQMARR----------VWKDYY-- 85 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~~----------~~~~~~-- 85 (193)
.+|+++|++|||||||+|++.+.... ...+ |.......+.+++..+.+|||||+..+.. ....++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~ 81 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVID 81 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHHhh
Confidence 58999999999999999999988644 2333 44456677788889999999999865542 444556
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC----CCHHHHHHhhCCCccccCCCcccCC
Q 029453 86 AKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYA----ASEDELRYHMGLTNFTTGKGNVNLD 161 (193)
Q Consensus 86 ~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (193)
..+|++++|+|+++.++...+. ..+. . .+.|+++|+||+|+... ...+++...++
T Consensus 82 ~~~d~vi~VvDas~~~~~~~l~---~~l~-~---~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~lg-------------- 140 (256)
T 3iby_A 82 LEYDCIINVIDACHLERHLYLT---SQLF-E---LGKPVVVALNMMDIAEHRGISIDTEKLESLLG-------------- 140 (256)
T ss_dssp SCCSEEEEEEEGGGHHHHHHHH---HHHT-T---SCSCEEEEEECHHHHHHTTCEECHHHHHHHHC--------------
T ss_pred CCCCEEEEEeeCCCchhHHHHH---HHHH-H---cCCCEEEEEEChhcCCcCCcHHHHHHHHHHcC--------------
Confidence 7899999999999865443332 2332 2 37999999999998622 22233444443
Q ss_pred CCCCccEEEEEEeeecCCChhHHHHhhhhh
Q 029453 162 NTNVRPLEVFMCSIVRKMGYGEGFKWLSQY 191 (193)
Q Consensus 162 ~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~ 191 (193)
++++++||++|.|+++++++|.+.
T Consensus 141 ------~~vi~~SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 141 ------CSVIPIQAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp ------SCEEECBGGGTBSHHHHHHHHHTC
T ss_pred ------CCEEEEECCCCCCHHHHHHHHHhh
Confidence 367999999999999999999763
No 113
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.92 E-value=3.7e-25 Score=164.74 Aligned_cols=147 Identities=24% Similarity=0.251 Sum_probs=108.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCcc-ccCC--CCCcceeEEEeCCeEEEEEEcCChhhhH----------HhHHhhh
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERLV-QHQP--TQYPTSEELSIGKIKFKAFDLGGHQMAR----------RVWKDYY 85 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~----------~~~~~~~ 85 (193)
++++|+++|++|||||||+|++.+.... ...+ |.......+...+..+.+|||||+..+. .....++
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~ 81 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI 81 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHHH
Confidence 5789999999999999999999988754 2233 4445566777778899999999976544 1222333
Q ss_pred --ccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC----CCHHHHHHhhCCCccccCCCccc
Q 029453 86 --AKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYA----ASEDELRYHMGLTNFTTGKGNVN 159 (193)
Q Consensus 86 --~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~~ 159 (193)
+.+|++++|+|+++.++......++... +.|+++|+||+|+... ...+++...++
T Consensus 82 ~~~~~d~ii~VvD~~~~~~~~~~~~~l~~~-------~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~lg------------ 142 (274)
T 3i8s_A 82 LSGDADLLINVVDASNLERNLYLTLQLLEL-------GIPCIVALNMLDIAEKQNIRIEIDALSARLG------------ 142 (274)
T ss_dssp HHTCCSEEEEEEEGGGHHHHHHHHHHHHHH-------TCCEEEEEECHHHHHHTTEEECHHHHHHHHT------------
T ss_pred hhcCCCEEEEEecCCChHHHHHHHHHHHhc-------CCCEEEEEECccchhhhhHHHHHHHHHHhcC------------
Confidence 6899999999999875544444444433 7899999999998632 12233444443
Q ss_pred CCCCCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 160 LDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 160 ~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
++++++||++|.|+++++++|.+.+
T Consensus 143 --------~~~i~~SA~~g~gi~el~~~i~~~~ 167 (274)
T 3i8s_A 143 --------CPVIPLVSTRGRGIEALKLAIDRYK 167 (274)
T ss_dssp --------SCEEECCCGGGHHHHHHHHHHHTCC
T ss_pred --------CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3579999999999999999998754
No 114
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.92 E-value=1e-24 Score=160.91 Aligned_cols=147 Identities=22% Similarity=0.280 Sum_probs=109.0
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCcc-ccCC--CCCcceeEEEeCCeEEEEEEcCChhhhHH------hHHhhh--c
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLV-QHQP--TQYPTSEELSIGKIKFKAFDLGGHQMARR------VWKDYY--A 86 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~~------~~~~~~--~ 86 (193)
.+.++|+++|++|||||||+|++.+..+. ...+ |.......+...+..+.+|||||+..+.. ....++ .
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~ 82 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLKG 82 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHhhc
Confidence 46789999999999999999999987754 3333 44455566777789999999999875532 223444 5
Q ss_pred cCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--C--CCHHHHHHhhCCCccccCCCcccCCC
Q 029453 87 KVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY--A--ASEDELRYHMGLTNFTTGKGNVNLDN 162 (193)
Q Consensus 87 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (193)
.+|++++|+|+++.++. ..++..+.. .+.|+++|+||+|+.. . ....++...++
T Consensus 83 ~~d~ii~V~D~t~~~~~---~~~~~~l~~----~~~pvilv~NK~Dl~~~~~i~~~~~~l~~~lg--------------- 140 (258)
T 3a1s_A 83 DADLVILVADSVNPEQS---LYLLLEILE----MEKKVILAMTAIDEAKKTGMKIDRYELQKHLG--------------- 140 (258)
T ss_dssp CCSEEEEEEETTSCHHH---HHHHHHHHT----TTCCEEEEEECHHHHHHTTCCBCHHHHHHHHC---------------
T ss_pred CCCEEEEEeCCCchhhH---HHHHHHHHh----cCCCEEEEEECcCCCCccchHHHHHHHHHHcC---------------
Confidence 89999999999987543 334455543 3799999999999852 1 22334444443
Q ss_pred CCCccEEEEEEeeecCCChhHHHHhhhhh
Q 029453 163 TNVRPLEVFMCSIVRKMGYGEGFKWLSQY 191 (193)
Q Consensus 163 ~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~ 191 (193)
++++++||++|.|+++++++|.+.
T Consensus 141 -----~~vi~~SA~~g~gi~el~~~i~~~ 164 (258)
T 3a1s_A 141 -----IPVVFTSSVTGEGLEELKEKIVEY 164 (258)
T ss_dssp -----SCEEECCTTTCTTHHHHHHHHHHH
T ss_pred -----CCEEEEEeeCCcCHHHHHHHHHHH
Confidence 357999999999999999998764
No 115
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.92 E-value=2.8e-24 Score=151.20 Aligned_cols=148 Identities=28% Similarity=0.325 Sum_probs=109.6
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCcc-ccCC--CCCcceeEEEeCCeEEEEEEcCChhhhH------HhHHhhhc--
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLV-QHQP--TQYPTSEELSIGKIKFKAFDLGGHQMAR------RVWKDYYA-- 86 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~------~~~~~~~~-- 86 (193)
.+.++|+++|++|||||||++++.+..+. ...+ +.......+.+++..+.+|||||++.+. .....++.
T Consensus 5 ~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 84 (188)
T 2wjg_A 5 MKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINE 84 (188)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSSHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCCcEEEEEECCCcCccccccHHHHHHHHHHhcc
Confidence 46789999999999999999999987643 3333 3334556677888999999999987653 33445553
Q ss_pred cCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC----CCHHHHHHhhCCCccccCCCcccCCC
Q 029453 87 KVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYA----ASEDELRYHMGLTNFTTGKGNVNLDN 162 (193)
Q Consensus 87 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (193)
.++++++|+|.++. .....++..+.. .+.|+++|+||+|+... ...+++.+.++
T Consensus 85 ~~~~~i~v~d~~~~---~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~--------------- 142 (188)
T 2wjg_A 85 KPDLVVNIVDATAL---ERNLYLTLQLME----MGANLLLALNKMDLAKSLGIEIDVDKLEKILG--------------- 142 (188)
T ss_dssp CCSEEEEEEEGGGH---HHHHHHHHHHHT----TTCCEEEEEECHHHHHHTTCCCCHHHHHHHHT---------------
T ss_pred CCCEEEEEecchhH---HHHHHHHHHHHh----cCCCEEEEEEhhhccccccchHHHHHHHHHhC---------------
Confidence 59999999999764 445556666643 47899999999998521 22333443332
Q ss_pred CCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 163 TNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 163 ~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
++++++||+++.|+++++++|.+.+
T Consensus 143 -----~~~~~~Sa~~~~~v~~l~~~i~~~~ 167 (188)
T 2wjg_A 143 -----VKVVPLSAAKKMGIEELKKAISIAV 167 (188)
T ss_dssp -----SCEEECBGGGTBSHHHHHHHHHHHH
T ss_pred -----CCeEEEEecCCCCHHHHHHHHHHHH
Confidence 3579999999999999999998754
No 116
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.92 E-value=4.9e-25 Score=159.21 Aligned_cols=160 Identities=18% Similarity=0.242 Sum_probs=105.4
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCc-ccc--CC--CCCcceeEEE-eCCeEEEEEEcCC----------hhhhHHhH
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERL-VQH--QP--TQYPTSEELS-IGKIKFKAFDLGG----------HQMARRVW 81 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~-~~~--~~--t~~~~~~~~~-~~~~~~~~~D~~g----------~~~~~~~~ 81 (193)
...++|+++|.+|||||||++++.+... ... .+ |......... ..+..+.+||||| ++.+....
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 106 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLL 106 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHH
Confidence 4678999999999999999999998873 222 22 2222222232 3457899999999 34555556
Q ss_pred Hhhhcc---CCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHH----HHHhhCCCccccC
Q 029453 82 KDYYAK---VDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDE----LRYHMGLTNFTTG 154 (193)
Q Consensus 82 ~~~~~~---~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~----~~~~~~~~~~~~~ 154 (193)
..++.. +|++++|+|++++.+ .....+...+.. .+.|+++|+||+|+.......+ +...+.... ...
T Consensus 107 ~~~~~~~~~~d~vi~v~d~~~~~~--~~~~~~~~~l~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~-~~~ 180 (223)
T 4dhe_A 107 SSYLQTRPQLCGMILMMDARRPLT--ELDRRMIEWFAP---TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYR-DAG 180 (223)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCC--HHHHHHHHHHGG---GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHH-HHT
T ss_pred HHHHhcCcCcCEEEEEEeCCCCCC--HHHHHHHHHHHh---cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhh-hcc
Confidence 666655 788999999987532 222333333333 4789999999999975333222 222221110 000
Q ss_pred CCcccCCCCCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 155 KGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
.....+++++||++|.|+++++++|.+.+
T Consensus 181 ---------~~~~~~~~~~SA~~g~gv~~l~~~l~~~~ 209 (223)
T 4dhe_A 181 ---------YAGKLTVQLFSALKRTGLDDAHALIESWL 209 (223)
T ss_dssp ---------CCSCEEEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred ---------cCCCCeEEEeecCCCcCHHHHHHHHHHhc
Confidence 01346899999999999999999998765
No 117
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.92 E-value=7.7e-25 Score=166.95 Aligned_cols=172 Identities=17% Similarity=0.233 Sum_probs=117.5
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc-eeEEEeCCe--EEEEEEcCChhhhHHhHHhhhccCCEEE
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPT-SEELSIGKI--KFKAFDLGGHQMARRVWKDYYAKVDAVV 92 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~-~~~~~~~~~--~~~~~D~~g~~~~~~~~~~~~~~~d~ii 92 (193)
..+.++|+++|.+|+|||||++++.++.+.. ..+|.... ...+..++. .+.+|||||++.+...+..++..+|+++
T Consensus 152 ~~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 231 (332)
T 2wkq_A 152 AKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL 231 (332)
T ss_dssp HTTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEE
T ss_pred ccceeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEE
Confidence 4567999999999999999999999887653 33444332 234455554 5569999999999888888899999999
Q ss_pred EEEeCCChhhHHHHH-HHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEE
Q 029453 93 YLIDAYDKERFSESK-RELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVF 171 (193)
Q Consensus 93 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (193)
+|+|++++.++.... .|+..+.... .++|+++|+||+|+.......+................ .... .....+++
T Consensus 232 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~-~~~~-~~~~~~~~ 307 (332)
T 2wkq_A 232 ICFSLVSPASFHHVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGL-AMAK-EIGAVKYL 307 (332)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC--TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHH-HHHH-HTTCSEEE
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhhC--CCCcEEEEEEchhcccccchhhhccccccccccHHHHH-HHHH-HcCCcEEE
Confidence 999999999888876 4555554322 38999999999998643211111111111110000000 0000 00113799
Q ss_pred EEeeecCCChhHHHHhhhhhc
Q 029453 172 MCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 172 ~~Sa~~~~gi~~~~~~i~~~l 192 (193)
++||++|.|++++|++|.+.+
T Consensus 308 ~~Sa~~~~gi~~l~~~l~~~~ 328 (332)
T 2wkq_A 308 ECSALTQRGLKTVFDEAIRAV 328 (332)
T ss_dssp ECCTTTCTTHHHHHHHHHHHH
T ss_pred EecCCCCcCHHHHHHHHHHHH
Confidence 999999999999999998754
No 118
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.92 E-value=6.2e-24 Score=151.03 Aligned_cols=157 Identities=22% Similarity=0.296 Sum_probs=117.0
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCC--cceeEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEE
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQY--PTSEELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVV 92 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 92 (193)
...++|+++|++|||||||++++.+..+.. +.+|.+ .....+.+++ ..+.+||++|++.+......+++.+++++
T Consensus 3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 82 (199)
T 2f9l_A 3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL 82 (199)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEE
Confidence 457899999999999999999999987653 334443 3345566666 46778999999988877777888999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhCCCccccCCCcccCCCCCCccEEE
Q 029453 93 YLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY--AASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEV 170 (193)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (193)
+|+|+++..++.....|+..+... ...+.|+++++||+|+.. ....++....... ..+.+
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~-----------------~~~~~ 144 (199)
T 2f9l_A 83 LVYDIAKHLTYENVERWLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEK-----------------NNLSF 144 (199)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHH-----------------TTCEE
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-cCCCCeEEEEEECcccccccCcCHHHHHHHHHH-----------------cCCeE
Confidence 999999988887777777665432 234789999999999962 2333332221111 12467
Q ss_pred EEEeeecCCChhHHHHhhhhhc
Q 029453 171 FMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 171 ~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
+.+||+++.|+++++++|.+.+
T Consensus 145 ~d~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 145 IETSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp EECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEeCCCCCCHHHHHHHHHHHH
Confidence 8899999999999999997754
No 119
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.91 E-value=3.5e-24 Score=159.02 Aligned_cols=146 Identities=26% Similarity=0.362 Sum_probs=104.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCc-cccCC--CCCcceeEEEeCCeEEEEEEcCChhhhH------HhHHhhhc--c
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERL-VQHQP--TQYPTSEELSIGKIKFKAFDLGGHQMAR------RVWKDYYA--K 87 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~-~~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~------~~~~~~~~--~ 87 (193)
..++|+++|++|||||||+|++.+... ....+ |.......+.. +..+.+|||||+..+. .....++. .
T Consensus 2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~ 80 (272)
T 3b1v_A 2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQR 80 (272)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTC
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcCC
Confidence 357999999999999999999998763 33334 33333344444 6789999999987653 34445554 6
Q ss_pred CCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--C--CCHHHHHHhhCCCccccCCCcccCCCC
Q 029453 88 VDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY--A--ASEDELRYHMGLTNFTTGKGNVNLDNT 163 (193)
Q Consensus 88 ~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (193)
+|++++|+|+++.++. ..+...+.. .+.|+++|+||+|+.. . ....++...++
T Consensus 81 ~d~vi~V~D~t~~e~~---~~~~~~l~~----~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg---------------- 137 (272)
T 3b1v_A 81 ADSILNVVDATNLERN---LYLTTQLIE----TGIPVTIALNMIDVLDGQGKKINVDKLSYHLG---------------- 137 (272)
T ss_dssp CSEEEEEEEGGGHHHH---HHHHHHHHH----TCSCEEEEEECHHHHHHTTCCCCHHHHHHHHT----------------
T ss_pred CCEEEEEecCCchHhH---HHHHHHHHh----cCCCEEEEEEChhhCCcCCcHHHHHHHHHHcC----------------
Confidence 9999999999886543 334444433 4799999999999852 1 22334444443
Q ss_pred CCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 164 NVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 164 ~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
++++++||++|.|+++++++|.+.+
T Consensus 138 ----~~vi~~SA~~g~gi~el~~~i~~~~ 162 (272)
T 3b1v_A 138 ----VPVVATSALKQTGVDQVVKKAAHTT 162 (272)
T ss_dssp ----SCEEECBTTTTBSHHHHHHHHHHSC
T ss_pred ----CCEEEEEccCCCCHHHHHHHHHHHH
Confidence 3579999999999999999997643
No 120
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.91 E-value=2.8e-24 Score=173.67 Aligned_cols=168 Identities=17% Similarity=0.201 Sum_probs=112.0
Q ss_pred HHHHHHHHHHHhC-----CCCcccEEEEEcCCCCCHHHHHHHHhcCCcc-ccCCCCCcceeEEE------------eCCe
Q 029453 3 LVDWFYGILVSLG-----LWQKEAKILFLGLDNSGKTTLLHMLKDERLV-QHQPTQYPTSEELS------------IGKI 64 (193)
Q Consensus 3 ~~~~~~~~~~~~~-----~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~~~~~------------~~~~ 64 (193)
+..|++.+..... ...+.+||+++|.+|||||||++++.+..+. ...+|.+....... ..+.
T Consensus 19 i~~yl~~l~~~~~~g~~~~~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~ 98 (535)
T 3dpu_A 19 VRQYFQSIEEARSKGEALVHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKEC 98 (535)
T ss_dssp HHHHHHHHHHHHHTTCCCBCCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTC
T ss_pred HHHHHHHHHHhhccCcccccccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceE
Confidence 5677777665221 3567899999999999999999999988865 33445554443221 1257
Q ss_pred EEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC--CCHHHH
Q 029453 65 KFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYA--ASEDEL 142 (193)
Q Consensus 65 ~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~--~~~~~~ 142 (193)
.+.+||+||++.+......++..+|++++|+|+++.+.. ..|+..+.... .+.|+++|+||+|+... ...+++
T Consensus 99 ~~~i~Dt~G~e~~~~~~~~~l~~~d~ii~V~D~s~~~~~---~~~~~~l~~~~--~~~pvilV~NK~Dl~~~~~v~~~~~ 173 (535)
T 3dpu_A 99 LFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTDSNK---HYWLRHIEKYG--GKSPVIVVMNKIDENPSYNIEQKKI 173 (535)
T ss_dssp EEEEECCCSCCTTTTTCHHHHHSSEEEEEEECGGGGGGH---HHHHHHHHHHS--SSCCEEEEECCTTTCTTCCCCHHHH
T ss_pred EEEEEECCcHHHHHHHHHHHccCCcEEEEEEeCCCchhH---HHHHHHHHHhC--CCCCEEEEEECCCcccccccCHHHH
Confidence 899999999999888888888999999999999876544 44444443321 36899999999999743 233334
Q ss_pred HHhhCCCccccCCCcccCCCCCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 143 RYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
....... ..+++++||++|.|+++++++|.+.+
T Consensus 174 ~~~~~~~-----------------~~~~~~vSA~~g~gi~eL~~~l~~~~ 206 (535)
T 3dpu_A 174 NERFPAI-----------------ENRFHRISCKNGDGVESIAKSLKSAV 206 (535)
T ss_dssp HHHCGGG-----------------TTCEEECCC-----CTTHHHHHHHHH
T ss_pred HHHHHhc-----------------CCceEEEecCcccCHHHHHHHHHHHH
Confidence 3333221 13689999999999999999998754
No 121
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.91 E-value=1.6e-23 Score=155.78 Aligned_cols=147 Identities=18% Similarity=0.189 Sum_probs=108.6
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCcc-ccCC--CCCcceeEEEeCCeEEEEEEcCChhhhHH------hHHhhh--cc
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERLV-QHQP--TQYPTSEELSIGKIKFKAFDLGGHQMARR------VWKDYY--AK 87 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~~------~~~~~~--~~ 87 (193)
+.++|+++|++|||||||+|++.+..+. ...+ |.......+.+.+..+.+|||||+..+.. ....++ .+
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 81 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSIDELIARNFILDGN 81 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTC
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHHHHHHHHhhhccC
Confidence 4679999999999999999999988763 2233 44445566778888999999999776543 344444 67
Q ss_pred CCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC----CCCHHHHHHhhCCCccccCCCcccCCCC
Q 029453 88 VDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY----AASEDELRYHMGLTNFTTGKGNVNLDNT 163 (193)
Q Consensus 88 ~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (193)
+|++++|+|+++.+ ....++..+... ...|+++|+||+|+.. .....++.+.++.
T Consensus 82 ~d~vi~v~D~~~~~---~~~~~~~~~~~~---~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~--------------- 140 (271)
T 3k53_A 82 ADVIVDIVDSTCLM---RNLFLTLELFEM---EVKNIILVLNKFDLLKKKGAKIDIKKMRKELGV--------------- 140 (271)
T ss_dssp CSEEEEEEEGGGHH---HHHHHHHHHHHT---TCCSEEEEEECHHHHHHHTCCCCHHHHHHHHSS---------------
T ss_pred CcEEEEEecCCcch---hhHHHHHHHHhc---CCCCEEEEEEChhcCcccccHHHHHHHHHHcCC---------------
Confidence 99999999998863 334444444433 2399999999999751 2234445555542
Q ss_pred CCccEEEEEEeeecCCChhHHHHhhhhh
Q 029453 164 NVRPLEVFMCSIVRKMGYGEGFKWLSQY 191 (193)
Q Consensus 164 ~~~~~~~~~~Sa~~~~gi~~~~~~i~~~ 191 (193)
+++++||++|.|+++++++|.+.
T Consensus 141 -----~~~~~Sa~~g~gi~~l~~~i~~~ 163 (271)
T 3k53_A 141 -----PVIPTNAKKGEGVEELKRMIALM 163 (271)
T ss_dssp -----CEEECBGGGTBTHHHHHHHHHHH
T ss_pred -----cEEEEEeCCCCCHHHHHHHHHHH
Confidence 56899999999999999999764
No 122
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.91 E-value=9.1e-25 Score=161.12 Aligned_cols=162 Identities=17% Similarity=0.140 Sum_probs=106.0
Q ss_pred CCCCcccEEEEEcCC---------CCCHHHHHHHHhcC---Ccc-ccCCCC-Ccc--ee----------------EEEeC
Q 029453 15 GLWQKEAKILFLGLD---------NSGKTTLLHMLKDE---RLV-QHQPTQ-YPT--SE----------------ELSIG 62 (193)
Q Consensus 15 ~~~~~~~~i~i~G~~---------~~GKssl~~~l~~~---~~~-~~~~t~-~~~--~~----------------~~~~~ 62 (193)
+...+.+||+++|.+ |||||||++++.+. .+. ...+|. +.. .. .+...
T Consensus 14 ~~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 93 (255)
T 3c5h_A 14 LYFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCV 93 (255)
T ss_dssp SSCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC-------
T ss_pred CCCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCc
Confidence 345678999999999 99999999999984 443 222221 110 00 02234
Q ss_pred CeEEEEEE-----------------------cCChhhhHHhHHhhhc---------------------cCCEEEEEEeCC
Q 029453 63 KIKFKAFD-----------------------LGGHQMARRVWKDYYA---------------------KVDAVVYLIDAY 98 (193)
Q Consensus 63 ~~~~~~~D-----------------------~~g~~~~~~~~~~~~~---------------------~~d~ii~v~d~~ 98 (193)
...+.+|| ++|++++...+..++. ++|++++|+|++
T Consensus 94 ~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t 173 (255)
T 3c5h_A 94 ECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVS 173 (255)
T ss_dssp --CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECB
T ss_pred EEEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECC
Confidence 56789999 4444444444444444 699999999999
Q ss_pred Ch--hhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeee
Q 029453 99 DK--ERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIV 176 (193)
Q Consensus 99 ~~--~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 176 (193)
++ +++..+..|+..+.......+.|+++|+||+|+......++....... . ..+.++++||+
T Consensus 174 ~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~-~---------------~~~~~~e~SAk 237 (255)
T 3c5h_A 174 RGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHTFALS-K---------------KNLQVVETSAR 237 (255)
T ss_dssp C----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHHHHHHHHHHT-S---------------SSCCEEECBTT
T ss_pred CCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHHHHHHHHHHh-c---------------CCCeEEEEECC
Confidence 98 899998888888764322357999999999999532112222111110 0 12478999999
Q ss_pred cCCChhHHHHhhhhhc
Q 029453 177 RKMGYGEGFKWLSQYI 192 (193)
Q Consensus 177 ~~~gi~~~~~~i~~~l 192 (193)
+|.|++++|++|.+.+
T Consensus 238 ~g~gv~elf~~l~~~l 253 (255)
T 3c5h_A 238 SNVNVDLAFSTLVQLI 253 (255)
T ss_dssp TTBSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999998765
No 123
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.91 E-value=9.7e-24 Score=167.54 Aligned_cols=149 Identities=23% Similarity=0.312 Sum_probs=111.9
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCcc--ccCC--CCCcceeEEEeCCeEEEEEEcCChh-hhH--------HhHHhhh
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERLV--QHQP--TQYPTSEELSIGKIKFKAFDLGGHQ-MAR--------RVWKDYY 85 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~-~~~--------~~~~~~~ 85 (193)
..++|+++|.+|||||||+|++.+.... ...+ |.......+.+++..+.+|||||+. +.. .....++
T Consensus 242 ~~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~ 321 (482)
T 1xzp_A 242 RGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEI 321 (482)
T ss_dssp HCEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHH
T ss_pred CCCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHHHh
Confidence 4489999999999999999999987642 3333 5566778888899999999999987 432 2234567
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCC
Q 029453 86 AKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNV 165 (193)
Q Consensus 86 ~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (193)
+.+|++++|+|++++.++... ..+ ..+ .++|+++|+||+|+......+++....+.
T Consensus 322 ~~aD~vl~VvD~s~~~s~~~~-~il-~~l-----~~~piivV~NK~DL~~~~~~~~~~~~~~~----------------- 377 (482)
T 1xzp_A 322 EKADIVLFVLDASSPLDEEDR-KIL-ERI-----KNKRYLVVINKVDVVEKINEEEIKNKLGT----------------- 377 (482)
T ss_dssp HHCSEEEEEEETTSCCCHHHH-HHH-HHH-----TTSSEEEEEEECSSCCCCCHHHHHHHHTC-----------------
T ss_pred hcccEEEEEecCCCCCCHHHH-HHH-HHh-----cCCCEEEEEECcccccccCHHHHHHHhcC-----------------
Confidence 899999999999987665443 223 222 37899999999999765444444433221
Q ss_pred ccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 166 RPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 166 ~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
..+++++||++|.|+++++++|.+.+
T Consensus 378 -~~~~i~iSAktg~Gi~eL~~~l~~~~ 403 (482)
T 1xzp_A 378 -DRHMVKISALKGEGLEKLEESIYRET 403 (482)
T ss_dssp -STTEEEEEGGGTCCHHHHHHHHHHHT
T ss_pred -CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 13579999999999999999998753
No 124
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.90 E-value=1.3e-23 Score=158.13 Aligned_cols=159 Identities=18% Similarity=0.244 Sum_probs=109.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccc----cCCCCCcceeEEEeCCeEEEEEEcCChhhhHH---hHHhhhccCCEEEEE
Q 029453 22 KILFLGLDNSGKTTLLHMLKDERLVQ----HQPTQYPTSEELSIGKIKFKAFDLGGHQMARR---VWKDYYAKVDAVVYL 94 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~---~~~~~~~~~d~ii~v 94 (193)
||+++|.+||||||+++++.++.... ..+|.+.....+. ....+.+|||+||+++.. ....++++++++|+|
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~IlV 79 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGALVYV 79 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEEC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEEc-cEEEEEEEECCCchhccchhhhhhhhccCCCEEEEE
Confidence 68999999999999999988665443 3456666655542 347899999999999864 357889999999999
Q ss_pred EeCCCh--hhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCH----HHHHHhhCCCccccCCCcccCCCCCCccE
Q 029453 95 IDAYDK--ERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASE----DELRYHMGLTNFTTGKGNVNLDNTNVRPL 168 (193)
Q Consensus 95 ~d~~~~--~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (193)
+|++++ +.......++..+... .++.|+++++||+|+...... .++..+......+... ....+
T Consensus 80 ~Ditd~~~~~~~~l~~~l~~~~~~--~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~--------~~~~i 149 (331)
T 3r7w_B 80 IDSQDEYINAITNLAMIIEYAYKV--NPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGL--------DGVQV 149 (331)
T ss_dssp CCCSSCTTHHHHHHHHHHHHHHHH--CTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSC--------SCCCE
T ss_pred EECCchHHHHHHHHHHHHHHHhhc--CCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcc--------cccCc
Confidence 999987 2233333333333221 257999999999999753322 2222222222211000 00247
Q ss_pred EEEEEeeecCCChhHHHHhhhhhc
Q 029453 169 EVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 169 ~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
.++++||++ .++.++|..|.+.+
T Consensus 150 ~f~eTSAkd-~nV~eAFs~iv~~l 172 (331)
T 3r7w_B 150 SFYLTSIFD-HSIYEAFSRIVQKL 172 (331)
T ss_dssp EEECCCSSS-SHHHHHHHHHHTTS
T ss_pred eEEEeccCC-CcHHHHHHHHHHHH
Confidence 899999998 59999999988754
No 125
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.90 E-value=5e-24 Score=162.62 Aligned_cols=154 Identities=21% Similarity=0.274 Sum_probs=113.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcc-cc--CCCCCcceeEEEeCC-eEEEEEEcCChhhh-------HHhHHhhhccCC
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLV-QH--QPTQYPTSEELSIGK-IKFKAFDLGGHQMA-------RRVWKDYYAKVD 89 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~-~~--~~t~~~~~~~~~~~~-~~~~~~D~~g~~~~-------~~~~~~~~~~~d 89 (193)
.+|+++|.+|||||||++++.+.... .. ..|..++...+.+.+ ..+.+|||||+.+. ...+...++.++
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d 238 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTR 238 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCC
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHHHHhcc
Confidence 37999999999999999999877643 22 236667777788775 88999999997541 122233456699
Q ss_pred EEEEEEeCCC---hhhHHHHHHHHHHHHhCC-CCCCCcEEEEeeCCCCCCCC-CHHHHHHhhCCCccccCCCcccCCCCC
Q 029453 90 AVVYLIDAYD---KERFSESKRELDALLSDE-ALADVPFLILGNKIDIPYAA-SEDELRYHMGLTNFTTGKGNVNLDNTN 164 (193)
Q Consensus 90 ~ii~v~d~~~---~~~~~~~~~~~~~~~~~~-~~~~~pviiv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (193)
++++|+|+++ ++++.....++..+.... ...++|+++|+||+|+.... ..+++.+.+...
T Consensus 239 ~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~e~~~~l~~~l~~~--------------- 303 (342)
T 1lnz_A 239 VIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEKLTDD--------------- 303 (342)
T ss_dssp EEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHHHHHHHHCCSC---------------
T ss_pred EEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCHHHHHHHHHHhhcC---------------
Confidence 9999999988 677888877777776532 13579999999999996421 112233333211
Q ss_pred CccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 165 VRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 165 ~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
.+++++||+++.|+++++++|.+.+
T Consensus 304 ---~~v~~iSA~tg~gi~eL~~~l~~~l 328 (342)
T 1lnz_A 304 ---YPVFPISAVTREGLRELLFEVANQL 328 (342)
T ss_dssp ---CCBCCCSSCCSSTTHHHHHHHHHHH
T ss_pred ---CCEEEEECCCCcCHHHHHHHHHHHH
Confidence 3678999999999999999998765
No 126
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.90 E-value=2.3e-23 Score=165.25 Aligned_cols=150 Identities=23% Similarity=0.218 Sum_probs=96.1
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCcc--ccCC--CCCcceeEEEeCCeEEEEEEcCChhhhHHhH--------Hhh
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLV--QHQP--TQYPTSEELSIGKIKFKAFDLGGHQMARRVW--------KDY 84 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~--------~~~ 84 (193)
....++|+++|.+|||||||+|++.+.... ...+ |.......+.+++..+.+|||||+..+.... ..+
T Consensus 230 ~r~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~ 309 (476)
T 3gee_A 230 VSEGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMK 309 (476)
T ss_dssp HHHCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETTEEEEEEC--------------------CC
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchhHHHHHHHHHHHhh
Confidence 346789999999999999999999987633 2222 4455667788899999999999987655333 235
Q ss_pred hccCCEEEEEEeCCChhhHHH---HHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHH--HHHhhCCCccccCCCccc
Q 029453 85 YAKVDAVVYLIDAYDKERFSE---SKRELDALLSDEALADVPFLILGNKIDIPYAASEDE--LRYHMGLTNFTTGKGNVN 159 (193)
Q Consensus 85 ~~~~d~ii~v~d~~~~~~~~~---~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~--~~~~~~~~~~~~~~~~~~ 159 (193)
+..+|++++|+|++++.++.. ...++..+ .+.|+++|+||+|+.+....+. +... .
T Consensus 310 ~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l------~~~piIvV~NK~Dl~~~~~~~~~~l~~~----~--------- 370 (476)
T 3gee_A 310 MAEADLILYLLDLGTERLDDELTEIRELKAAH------PAAKFLTVANKLDRAANADALIRAIADG----T--------- 370 (476)
T ss_dssp CSSCSEEEEEEETTTCSSGGGHHHHHHHHHHC------TTSEEEEEEECTTSCTTTHHHHHHHHHH----H---------
T ss_pred cccCCEEEEEEECCCCcchhhhHHHHHHHHhc------CCCCEEEEEECcCCCCccchhHHHHHhc----C---------
Confidence 788999999999998766542 23333322 2799999999999975433321 1111 0
Q ss_pred CCCCCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 160 LDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 160 ~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
..+++++||++|.|+++++++|.+.+
T Consensus 371 -------~~~~i~vSAktg~GI~eL~~~i~~~~ 396 (476)
T 3gee_A 371 -------GTEVIGISALNGDGIDTLKQHMGDLV 396 (476)
T ss_dssp -------TSCEEECBTTTTBSHHHHHHHHTHHH
T ss_pred -------CCceEEEEECCCCCHHHHHHHHHHHH
Confidence 13689999999999999999998754
No 127
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.90 E-value=6.7e-23 Score=144.86 Aligned_cols=157 Identities=19% Similarity=0.264 Sum_probs=116.8
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCcc-ccCCCCCc--ceeEEEeCCe--EEEEEEcCChhhhHHhHHhhhccCCEEE
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLV-QHQPTQYP--TSEELSIGKI--KFKAFDLGGHQMARRVWKDYYAKVDAVV 92 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~-~~~~t~~~--~~~~~~~~~~--~~~~~D~~g~~~~~~~~~~~~~~~d~ii 92 (193)
...++|+++|++|||||||++++.+..+. .+.+|.+. ....+.+++. .+.+||++|++++...+..+++.+++++
T Consensus 27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 106 (191)
T 1oix_A 27 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGAL 106 (191)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEE
Confidence 45689999999999999999999988765 34445443 3456666664 4567999999888777778888899999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhCCCccccCCCcccCCCCCCccEEE
Q 029453 93 YLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY--AASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEV 170 (193)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (193)
+|+|.++..++.....|+..+... ...+.|+++++||+|+.. .....+....... ..+.+
T Consensus 107 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~-----------------~~~~~ 168 (191)
T 1oix_A 107 LVYDIAKHLTYENVERWLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEK-----------------NGLSF 168 (191)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHH-----------------TTCEE
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccCHHHHHHHHHH-----------------cCCEE
Confidence 999999988887777776655332 224789999999999863 2233322221111 12467
Q ss_pred EEEeeecCCChhHHHHhhhhhc
Q 029453 171 FMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 171 ~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
+.+||+++.|+++++++|.+.+
T Consensus 169 ld~Sald~~~v~~l~~~l~~~i 190 (191)
T 1oix_A 169 IETSALDSTNVEAAFQTILTEI 190 (191)
T ss_dssp EECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEeCCCCCCHHHHHHHHHHHh
Confidence 8899999999999999998765
No 128
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.90 E-value=1.1e-23 Score=166.26 Aligned_cols=156 Identities=14% Similarity=0.115 Sum_probs=110.1
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCcc--ccCC--CCCcceeEEEeCCeEEEEEEcCCh----------hhhHHhHH-h
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERLV--QHQP--TQYPTSEELSIGKIKFKAFDLGGH----------QMARRVWK-D 83 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~~~D~~g~----------~~~~~~~~-~ 83 (193)
..++|+++|.+|||||||+|++.+.... ...+ |.......+..++..+.+|||||+ +.+..... .
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~ 253 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALK 253 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHHH
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHHHH
Confidence 5689999999999999999999988754 2222 444555677888889999999998 44444332 4
Q ss_pred hhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC--HHHHHHhhCCCccccCCCcccCC
Q 029453 84 YYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAAS--EDELRYHMGLTNFTTGKGNVNLD 161 (193)
Q Consensus 84 ~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 161 (193)
+++.+|++++|+|++++.+.+.. .++..+.. .++|+++|+||+|+..... .+++.+.+.....
T Consensus 254 ~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~---------- 318 (436)
T 2hjg_A 254 AIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE----AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQ---------- 318 (436)
T ss_dssp HHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH----TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCG----------
T ss_pred HHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH----cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcc----------
Confidence 67889999999999998766554 34444432 4799999999999975433 2333332221110
Q ss_pred CCCCccEEEEEEeeecCCChhHHHHhhhhh
Q 029453 162 NTNVRPLEVFMCSIVRKMGYGEGFKWLSQY 191 (193)
Q Consensus 162 ~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~ 191 (193)
.....+++++||++|.|++++++.+.+.
T Consensus 319 --~~~~~~~~~~SA~tg~~v~~l~~~i~~~ 346 (436)
T 2hjg_A 319 --FLDYAPILFMSALTKKRIHTLMPAIIKA 346 (436)
T ss_dssp --GGTTSCEEECCTTTCTTGGGHHHHHHHH
T ss_pred --cCCCCCEEEEecccCCCHHHHHHHHHHH
Confidence 0023578999999999999999998764
No 129
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.90 E-value=1.2e-23 Score=166.24 Aligned_cols=149 Identities=19% Similarity=0.223 Sum_probs=102.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcc--ccCC--CCCcceeEEEeCCeEEEEEEcCChhh---------hHHhHHhhhcc
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLV--QHQP--TQYPTSEELSIGKIKFKAFDLGGHQM---------ARRVWKDYYAK 87 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~---------~~~~~~~~~~~ 87 (193)
.+|+++|.+|||||||+|++.+.... ...+ |.+.....+.+++..+.+|||||++. +......+++.
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ 81 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIRE 81 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHHHh
Confidence 48999999999999999999988743 2222 55666778888999999999999653 34556678899
Q ss_pred CCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHH-HHhhCCCccccCCCcccCCCCCCc
Q 029453 88 VDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDEL-RYHMGLTNFTTGKGNVNLDNTNVR 166 (193)
Q Consensus 88 ~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 166 (193)
+|++++|+|+.++.+. ...++..+++. .++|+++|+||+|+.... ..+. .+.... .
T Consensus 82 ad~il~V~D~~~~~~~--~d~~i~~~l~~---~~~p~ilv~NK~D~~~~~-~~~~~~~~~~l-----------------g 138 (439)
T 1mky_A 82 ADLVLFVVDGKRGITK--EDESLADFLRK---STVDTILVANKAENLREF-EREVKPELYSL-----------------G 138 (439)
T ss_dssp CSEEEEEEETTTCCCH--HHHHHHHHHHH---HTCCEEEEEESCCSHHHH-HHHTHHHHGGG-----------------S
T ss_pred CCEEEEEEECCCCCCH--HHHHHHHHHHH---cCCCEEEEEeCCCCcccc-HHHHHHHHHhc-----------------C
Confidence 9999999999875332 22333344332 378999999999985210 1111 111111 1
Q ss_pred cEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 167 PLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 167 ~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
..+++++||++|.|+++++++|.+.+
T Consensus 139 ~~~~~~iSA~~g~gv~~L~~~i~~~l 164 (439)
T 1mky_A 139 FGEPIPVSAEHNINLDTMLETIIKKL 164 (439)
T ss_dssp SCSCEECBTTTTBSHHHHHHHHHHHH
T ss_pred CCCEEEEeccCCCCHHHHHHHHHHhc
Confidence 11468999999999999999997653
No 130
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.90 E-value=1.7e-23 Score=163.66 Aligned_cols=165 Identities=17% Similarity=0.143 Sum_probs=110.7
Q ss_pred CCCCcccEEEEEcCCCCCHHHHHHHHhcCCccccCC----CC--------------Cc-----ceeEEEeCCeEEEEEEc
Q 029453 15 GLWQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQP----TQ--------------YP-----TSEELSIGKIKFKAFDL 71 (193)
Q Consensus 15 ~~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~----t~--------------~~-----~~~~~~~~~~~~~~~D~ 71 (193)
+..++.++|+++|++|+|||||+++|.+........ +. .. ...........+.+|||
T Consensus 3 ~~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDt 82 (403)
T 3sjy_A 3 PKVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDA 82 (403)
T ss_dssp CCCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEEC
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEEC
Confidence 346688999999999999999999998743221100 00 00 00000112268999999
Q ss_pred CChhhhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCcc
Q 029453 72 GGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNF 151 (193)
Q Consensus 72 ~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~ 151 (193)
|||+.+...+..++..+|++++|+|++++.++.....++..+... ...|+++|+||+|+.......+..+.+....
T Consensus 83 PGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~---~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l- 158 (403)
T 3sjy_A 83 PGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII---GVKNLIIVQNKVDVVSKEEALSQYRQIKQFT- 158 (403)
T ss_dssp CCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCHHHHHHHHHHHHHHH-
T ss_pred CCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc---CCCCEEEEEECccccchHHHHHHHHHHHHHH-
Confidence 999999999999999999999999999875444444444433222 2358999999999974322222222211100
Q ss_pred ccCCCcccCCCCCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 152 TTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
. .......+++++||++|.|+++++++|.+.+
T Consensus 159 ~---------~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l 190 (403)
T 3sjy_A 159 K---------GTWAENVPIIPVSALHKINIDSLIEGIEEYI 190 (403)
T ss_dssp T---------TSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred H---------hhCCCCCEEEEEECCCCcChHHHHHHHHHhC
Confidence 0 0011346899999999999999999998754
No 131
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.89 E-value=9.1e-24 Score=166.73 Aligned_cols=149 Identities=16% Similarity=0.255 Sum_probs=100.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccccCC----CCCcceeEEEeCCeEEEEEEcCChh--------hhHHhHHhhhcc
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDERLVQHQP----TQYPTSEELSIGKIKFKAFDLGGHQ--------MARRVWKDYYAK 87 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~D~~g~~--------~~~~~~~~~~~~ 87 (193)
.++|+++|.+|||||||+|++.+.......+ |.+.......+.+..+.+|||||++ .+......+++.
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ 82 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDE 82 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHh
Confidence 4699999999999999999999876543322 3344445556677889999999985 566666778899
Q ss_pred CCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCcc
Q 029453 88 VDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRP 167 (193)
Q Consensus 88 ~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (193)
+|++++|+|+.++.+. ...++..+++. .++|+++|+||+|+..... +. ..++. ...
T Consensus 83 ad~il~vvD~~~~~~~--~d~~~~~~l~~---~~~pvilv~NK~D~~~~~~--~~-----~~~~~------------lg~ 138 (436)
T 2hjg_A 83 ADVIIFMVNGREGVTA--ADEEVAKILYR---TKKPVVLAVNKLDNTEMRA--NI-----YDFYS------------LGF 138 (436)
T ss_dssp CSEEEEEEETTTCSCH--HHHHHHHHHTT---CCSCEEEEEECCCC-------CC-----CSSGG------------GSS
T ss_pred CCEEEEEEeCCCCCCH--HHHHHHHHHHH---cCCCEEEEEECccCccchh--hH-----HHHHH------------cCC
Confidence 9999999999886443 33455555543 5789999999999864211 00 01100 011
Q ss_pred EEEEEEeeecCCChhHHHHhhhhhc
Q 029453 168 LEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 168 ~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
.+++++||++|.|+++++++|.+.+
T Consensus 139 ~~~~~iSA~~g~gv~~L~~~i~~~l 163 (436)
T 2hjg_A 139 GEPYPISGTHGLGLGDLLDAVAEHF 163 (436)
T ss_dssp CCCEECBTTTTBTHHHHHHHHHHTG
T ss_pred CCeEEEeCcCCCChHHHHHHHHHhc
Confidence 2579999999999999999997754
No 132
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.89 E-value=5.5e-23 Score=154.86 Aligned_cols=154 Identities=16% Similarity=0.151 Sum_probs=106.0
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCcccc--CC--CCCcceeEEEeCCeEEEEEEcCChh-hhHHh--------HHhh
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQH--QP--TQYPTSEELSIGKIKFKAFDLGGHQ-MARRV--------WKDY 84 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~--~~--t~~~~~~~~~~~~~~~~~~D~~g~~-~~~~~--------~~~~ 84 (193)
.+..+|+++|++|||||||+|++.+...... .+ |.......+..++..+.+|||||+. ..... ...+
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~ 85 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSS 85 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSC
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccchhhHHHHHHHHHHHH
Confidence 3566899999999999999999998875422 22 3334445566778899999999986 33221 2344
Q ss_pred hccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC-CCHHHHHHhhCCCccccCCCcccCCCC
Q 029453 85 YAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYA-ASEDELRYHMGLTNFTTGKGNVNLDNT 163 (193)
Q Consensus 85 ~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (193)
++.+|++++|+|+++ +.....++...+.. .+.|+++++||+|+... ....+....+....
T Consensus 86 l~~~D~vl~Vvd~~~---~~~~~~~i~~~l~~---~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~------------- 146 (301)
T 1ega_A 86 IGDVELVIFVVEGTR---WTPDDEMVLNKLRE---GKAPVILAVNKVDNVQEKADLLPHLQFLASQM------------- 146 (301)
T ss_dssp CCCEEEEEEEEETTC---CCHHHHHHHHHHHS---SSSCEEEEEESTTTCCCHHHHHHHHHHHHTTS-------------
T ss_pred HhcCCEEEEEEeCCC---CCHHHHHHHHHHHh---cCCCEEEEEECcccCccHHHHHHHHHHHHHhc-------------
Confidence 678999999999976 23333444444433 47899999999998641 11112222221111
Q ss_pred CCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 164 NVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 164 ~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
....++++||++|.|+++++++|.+.+
T Consensus 147 --~~~~~i~iSA~~g~~v~~l~~~i~~~l 173 (301)
T 1ega_A 147 --NFLDIVPISAETGLNVDTIAAIVRKHL 173 (301)
T ss_dssp --CCSEEEECCTTTTTTHHHHHHHHHTTC
T ss_pred --CcCceEEEECCCCCCHHHHHHHHHHhC
Confidence 113689999999999999999998653
No 133
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.89 E-value=1.5e-22 Score=155.97 Aligned_cols=156 Identities=17% Similarity=0.221 Sum_probs=112.4
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCccc-c--CCCCCcceeEEEeCCeEEEEEEcCChhhh---------HHhHHhhh
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQ-H--QPTQYPTSEELSIGKIKFKAFDLGGHQMA---------RRVWKDYY 85 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~--~~t~~~~~~~~~~~~~~~~~~D~~g~~~~---------~~~~~~~~ 85 (193)
...++|+++|++|||||||++++.+..... . ..|.......+...+..+.+|||||+... ........
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 244 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILALR 244 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHHGGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHHHHHHHH
Confidence 567899999999999999999999877432 1 22555556666677889999999997432 12222344
Q ss_pred ccCCEEEEEEeCCChh--hHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCC
Q 029453 86 AKVDAVVYLIDAYDKE--RFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNT 163 (193)
Q Consensus 86 ~~~d~ii~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (193)
..+|++++|+|++++. ++.....++..+.... .+.|+++|+||+|+......++.......
T Consensus 245 ~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~--~~~piilV~NK~Dl~~~~~~~~~~~~~~~--------------- 307 (357)
T 2e87_A 245 YLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEF--KDLPFLVVINKIDVADEENIKRLEKFVKE--------------- 307 (357)
T ss_dssp GTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHT--TTSCEEEEECCTTTCCHHHHHHHHHHHHH---------------
T ss_pred hcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhc--CCCCEEEEEECcccCChHHHHHHHHHHHh---------------
Confidence 5699999999998876 5666677777765432 27999999999999643222222222110
Q ss_pred CCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 164 NVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 164 ~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
...+++++||++|+|+++++++|.+.+
T Consensus 308 --~~~~~~~iSA~~g~gi~~l~~~i~~~l 334 (357)
T 2e87_A 308 --KGLNPIKISALKGTGIDLVKEEIIKTL 334 (357)
T ss_dssp --TTCCCEECBTTTTBTHHHHHHHHHHHH
T ss_pred --cCCCeEEEeCCCCcCHHHHHHHHHHHH
Confidence 124679999999999999999998754
No 134
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.89 E-value=3.1e-23 Score=164.53 Aligned_cols=158 Identities=14% Similarity=0.159 Sum_probs=111.2
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCcc--ccCC--CCCcceeEEEeCCeEEEEEEcCC----------hhhhHHhHH-
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLV--QHQP--TQYPTSEELSIGKIKFKAFDLGG----------HQMARRVWK- 82 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~~~D~~g----------~~~~~~~~~- 82 (193)
...++|+++|.+|+|||||++++.+.... ...+ |.......+..++..+.+||||| ++.+.....
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~ 272 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRAL 272 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHH
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHHH
Confidence 46789999999999999999999977632 2222 44555667888889999999999 566655443
Q ss_pred hhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCC--CHHHHHHhhCCCccccCCCcccC
Q 029453 83 DYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAA--SEDELRYHMGLTNFTTGKGNVNL 160 (193)
Q Consensus 83 ~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 160 (193)
.+++.+|++++|+|++++.. ....++...+.. .++|+++|+||+|+.... ..+++.+...... .
T Consensus 273 ~~~~~ad~~llviD~~~~~~--~~~~~~~~~~~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~-~-------- 338 (456)
T 4dcu_A 273 KAIDRSEVVAVVLDGEEGII--EQDKRIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHF-Q-------- 338 (456)
T ss_dssp HHHHHCSEEEEEEETTTCCC--HHHHHHHHHHHH---TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHC-G--------
T ss_pred HHHhhCCEEEEEEeCCCCcC--HHHHHHHHHHHH---cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhc-c--------
Confidence 46789999999999988532 333333333333 479999999999997432 2333333332211 0
Q ss_pred CCCCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 161 DNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 161 ~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
.....+++++||++|.|++++|++|.+.+
T Consensus 339 ---~~~~~~~~~~SA~~g~gv~~l~~~i~~~~ 367 (456)
T 4dcu_A 339 ---FLDYAPILFMSALTKKRIHTLMPAIIKAS 367 (456)
T ss_dssp ---GGTTSCEEECCTTTCTTGGGHHHHHHHHH
T ss_pred ---cCCCCCEEEEcCCCCcCHHHHHHHHHHHH
Confidence 01235799999999999999999987653
No 135
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.89 E-value=6.2e-23 Score=147.72 Aligned_cols=122 Identities=25% Similarity=0.338 Sum_probs=93.2
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCeEEEEEEcCChhhhHHhHHhhhcc----CCEEE
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMARRVWKDYYAK----VDAVV 92 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~----~d~ii 92 (193)
..+.++|+++|++|||||||++++.+..+....++..++. ...+....+.+|||||++.+...+..++.. +|+++
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i 87 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLS-AADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLI 87 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEE-ETTGGGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEE
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceE-EEEeeCceEEEEECCCcHHHHHHHHHHHHhccccCCEEE
Confidence 4578999999999999999999999887653222222211 111255688999999999988877777776 89999
Q ss_pred EEEeCC-ChhhHHHHHHHHHHHHhCC---CCCCCcEEEEeeCCCCCCCCCH
Q 029453 93 YLIDAY-DKERFSESKRELDALLSDE---ALADVPFLILGNKIDIPYAASE 139 (193)
Q Consensus 93 ~v~d~~-~~~~~~~~~~~~~~~~~~~---~~~~~pviiv~nK~Dl~~~~~~ 139 (193)
+|+|++ +++++.....++..++... ...+.|+++|+||+|+......
T Consensus 88 ~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~ 138 (218)
T 1nrj_B 88 FMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPP 138 (218)
T ss_dssp EEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCH
T ss_pred EEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCH
Confidence 999999 7788888888888776532 2257999999999999865553
No 136
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.89 E-value=8.2e-23 Score=162.75 Aligned_cols=162 Identities=15% Similarity=0.133 Sum_probs=109.2
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCC----cc---c-c--CCCCCcceeEEEeCCeEEEEEEcCChhhhHHhHHhhhc
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDER----LV---Q-H--QPTQYPTSEELSIGKIKFKAFDLGGHQMARRVWKDYYA 86 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~----~~---~-~--~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~ 86 (193)
..+.++|+++|++++|||||+++|.+.. .. . . ..|.......+.+++..+.+||||||+.+...+..++.
T Consensus 16 ~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~~~~~~~~~~~~ 95 (482)
T 1wb1_A 16 DFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAAD 95 (482)
T ss_dssp CCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHHTT
T ss_pred cCCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChHHHHHHHHHHHh
Confidence 4568999999999999999999998766 21 1 1 12444455567778899999999999999888888999
Q ss_pred cCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCc
Q 029453 87 KVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVR 166 (193)
Q Consensus 87 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (193)
.+|++++|+|++++..-+.. ..+. ++.. .++|+++++||+|+......++..+++.... .... ...
T Consensus 96 ~aD~~ilVvda~~g~~~qt~-e~l~-~~~~---~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l-~~~~--------~~~ 161 (482)
T 1wb1_A 96 IIDLALIVVDAKEGPKTQTG-EHML-ILDH---FNIPIIVVITKSDNAGTEEIKRTEMIMKSIL-QSTH--------NLK 161 (482)
T ss_dssp SCCEEEEEEETTTCSCHHHH-HHHH-HHHH---TTCCBCEEEECTTSSCHHHHHHHHHHHHHHH-HHSS--------SGG
T ss_pred hCCEEEEEEecCCCccHHHH-HHHH-HHHH---cCCCEEEEEECCCcccchhHHHHHHHHHHHH-hhhc--------ccc
Confidence 99999999999874211111 1111 2222 3688899999999974222222222221110 0000 012
Q ss_pred cEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 167 PLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 167 ~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
..+++++||++|.|+++++++|.+.+
T Consensus 162 ~~~ii~vSA~~g~gI~~L~~~L~~~i 187 (482)
T 1wb1_A 162 NSSIIPISAKTGFGVDELKNLIITTL 187 (482)
T ss_dssp GCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHHhh
Confidence 46899999999999999999998753
No 137
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.88 E-value=6.3e-23 Score=162.22 Aligned_cols=149 Identities=18% Similarity=0.224 Sum_probs=99.6
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCcc--ccCC--CCCcceeEEEeCCeEEEEEEcCChhhhHHhHH--------hhh
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLV--QHQP--TQYPTSEELSIGKIKFKAFDLGGHQMARRVWK--------DYY 85 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~--------~~~ 85 (193)
...++|+++|++|||||||+|++.+.... ...+ |.......+..++..+.+|||||+........ .++
T Consensus 222 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~ 301 (462)
T 3geh_A 222 RTGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSDQVEKIGVERSRQAA 301 (462)
T ss_dssp HHCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEEEECC--------------------CCC
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEEEEEECCccccchhHHHHHHHHHHhhhh
Confidence 35689999999999999999999876543 2222 33344567788899999999999865433222 356
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCC
Q 029453 86 AKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNV 165 (193)
Q Consensus 86 ~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (193)
..+|++++|+|++++.+... ..++..+ ...|+++|+||+|+.+..... .... ..
T Consensus 302 ~~aD~vl~VvD~s~~~~~~~-~~i~~~l------~~~piivV~NK~Dl~~~~~~~------~~~~-------------~~ 355 (462)
T 3geh_A 302 NTADLVLLTIDAATGWTTGD-QEIYEQV------KHRPLILVMNKIDLVEKQLIT------SLEY-------------PE 355 (462)
T ss_dssp CSCSEEEEEEETTTCSCHHH-HHHHHHH------TTSCEEEEEECTTSSCGGGST------TCCC-------------CT
T ss_pred hcCCEEEEEeccCCCCCHHH-HHHHHhc------cCCcEEEEEECCCCCcchhhH------HHHH-------------hc
Confidence 78999999999998754433 3344443 247999999999996432211 0000 01
Q ss_pred ccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 166 RPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 166 ~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
...+++++||++|.|+++++++|.+.+
T Consensus 356 ~~~~~i~iSAktg~Gi~eL~~~i~~~~ 382 (462)
T 3geh_A 356 NITQIVHTAAAQKQGIDSLETAILEIV 382 (462)
T ss_dssp TCCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 235789999999999999999998764
No 138
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.88 E-value=3.9e-23 Score=161.53 Aligned_cols=151 Identities=19% Similarity=0.269 Sum_probs=106.6
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCcccc----CCCCCcceeEEEeCCe-EEEEEEcCChhhhHHh-------HHhhh
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQH----QPTQYPTSEELSIGKI-KFKAFDLGGHQMARRV-------WKDYY 85 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~----~~t~~~~~~~~~~~~~-~~~~~D~~g~~~~~~~-------~~~~~ 85 (193)
...++|+++|.+|+|||||++++.+..+... ..|.......+.+.+. .+.+|||||+..+... ...++
T Consensus 32 ~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~~~~l 111 (423)
T 3qq5_A 32 GFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKARRVF 111 (423)
T ss_dssp CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHHHHHH
Confidence 3578999999999999999999998876421 2255566667777664 8999999998765322 45577
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCC
Q 029453 86 AKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNV 165 (193)
Q Consensus 86 ~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (193)
..+|++++|+|++.. .....++..+.. .++|+++|+||+|+...... +..+.+....
T Consensus 112 ~~aD~vllVvD~~~~---~~~~~~l~~l~~----~~~piIvV~NK~Dl~~~~~~-~~~~~l~~~~--------------- 168 (423)
T 3qq5_A 112 YRADCGILVTDSAPT---PYEDDVVNLFKE----MEIPFVVVVNKIDVLGEKAE-ELKGLYESRY--------------- 168 (423)
T ss_dssp TSCSEEEEECSSSCC---HHHHHHHHHHHH----TTCCEEEECCCCTTTTCCCT-HHHHHSSCCT---------------
T ss_pred hcCCEEEEEEeCCCh---HHHHHHHHHHHh----cCCCEEEEEeCcCCCCccHH-HHHHHHHHHc---------------
Confidence 889999999999433 233444444433 27999999999999855443 3333332221
Q ss_pred ccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 166 RPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 166 ~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
.++++++||++|.|+++++++|.+.+
T Consensus 169 -g~~v~~vSAktg~gI~eL~~~L~~~l 194 (423)
T 3qq5_A 169 -EAKVLLVSALQKKGFDDIGKTISEIL 194 (423)
T ss_dssp -TCCCCCCSSCCTTSTTTHHHHHHHHS
T ss_pred -CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 24789999999999999999998865
No 139
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.88 E-value=3.2e-21 Score=151.03 Aligned_cols=158 Identities=18% Similarity=0.133 Sum_probs=99.0
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCccc----cCC--CCCcceeEEEe---------------C--------CeEEEE
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQ----HQP--TQYPTSEELSI---------------G--------KIKFKA 68 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~~----~~~--t~~~~~~~~~~---------------~--------~~~~~~ 68 (193)
+..++|+++|++++|||||+++|.+..... ..+ |.......... + ...+.+
T Consensus 6 ~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i 85 (408)
T 1s0u_A 6 QAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSF 85 (408)
T ss_dssp CCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEE
T ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEE
Confidence 467899999999999999999998543221 112 33222221111 1 268999
Q ss_pred EEcCChhhhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC----HHHHHH
Q 029453 69 FDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAAS----EDELRY 144 (193)
Q Consensus 69 ~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~----~~~~~~ 144 (193)
||||||+.+...+......+|++++|+|++++.........+..+... ...|+++++||+|+..... .+++.+
T Consensus 86 iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l---~~~~iivv~NK~Dl~~~~~~~~~~~~i~~ 162 (408)
T 1s0u_A 86 VDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEIL---GIDKIIIVQNKIDLVDEKQAEENYEQIKE 162 (408)
T ss_dssp EECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHT---TCCCEEEEEECTTSSCTTTTTTHHHHHHH
T ss_pred EECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHc---CCCeEEEEEEccCCCCHHHHHHHHHHHHH
Confidence 999999999888888888899999999998642111111122222111 2358999999999975332 223333
Q ss_pred hhCCCccccCCCcccCCCCCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 145 HMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
.+.... ....+++++||++|.|+++++++|.+.+
T Consensus 163 ~l~~~~--------------~~~~~~i~vSA~~g~gi~~L~~~l~~~i 196 (408)
T 1s0u_A 163 FVKGTI--------------AENAPIIPISAHHEANIDVLLKAIQDFI 196 (408)
T ss_dssp HHTTST--------------TTTCCEEEC------CHHHHHHHHHHHS
T ss_pred HHhhcC--------------CCCCeEEEeeCCCCCCHHHHHHHHHHhC
Confidence 332211 1346899999999999999999998754
No 140
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.88 E-value=6.1e-24 Score=170.07 Aligned_cols=157 Identities=19% Similarity=0.151 Sum_probs=110.8
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCccc-cCC--CCCcceeEEEe-CCeEEEEEEcCChhhhHHhHHhhhccCCEEEE
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQP--TQYPTSEELSI-GKIKFKAFDLGGHQMARRVWKDYYAKVDAVVY 93 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~--t~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 93 (193)
.+.++|+++|++|+|||||+++|.+..+.. ..+ |.......+.. .+..+.+||||||+.|...+..++..+|++++
T Consensus 2 ~r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vIL 81 (537)
T 3izy_P 2 PRSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMRARGTQVTDIVIL 81 (537)
T ss_dssp CCCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTSBBSSSBSBSSCEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHHHHHHHccCCEEEE
Confidence 367899999999999999999998766542 222 33333334444 45678999999999999888888899999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC---HHHHHHhhCCCccccCCCcccCCCCCCccEEE
Q 029453 94 LIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAAS---EDELRYHMGLTNFTTGKGNVNLDNTNVRPLEV 170 (193)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (193)
|+|++++...+... .+..+. . .++|+++++||+|+..... ..++. .+.... ..+....++
T Consensus 82 VVDa~dg~~~qt~e-~l~~~~-~---~~vPiIVViNKiDl~~~~~~~v~~~l~-~~~~~~-----------e~~~~~~~i 144 (537)
T 3izy_P 82 VVAADDGVMKQTVE-SIQHAK-D---AHVPIVLAINKCDKAEADPEKVKKELL-AYDVVC-----------EDYGGDVQA 144 (537)
T ss_dssp ECBSSSCCCHHHHH-HHHHHH-T---TTCCEEECCBSGGGTTTSCCSSSSHHH-HTTSCC-----------CCSSSSEEE
T ss_pred EEECCCCccHHHHH-HHHHHH-H---cCCcEEEEEecccccccchHHHHHHHH-hhhhhH-----------HhcCCCceE
Confidence 99999865433333 222232 2 4789999999999973221 11222 111111 112245789
Q ss_pred EEEeeecCCChhHHHHhhhhh
Q 029453 171 FMCSIVRKMGYGEGFKWLSQY 191 (193)
Q Consensus 171 ~~~Sa~~~~gi~~~~~~i~~~ 191 (193)
+++||++|.|+++++++|...
T Consensus 145 v~vSAktG~GI~eLle~I~~l 165 (537)
T 3izy_P 145 VHVSALTGENMMALAEATIAL 165 (537)
T ss_dssp CCCCSSSSCSSHHHHHHHHHH
T ss_pred EEEECCCCCCchhHHHHHHHh
Confidence 999999999999999998764
No 141
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.88 E-value=1.1e-22 Score=161.28 Aligned_cols=152 Identities=16% Similarity=0.239 Sum_probs=104.2
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccccCC----CCCcceeEEEeCCeEEEEEEcCC--------hhhhHHhHHhh
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQP----TQYPTSEELSIGKIKFKAFDLGG--------HQMARRVWKDY 84 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~D~~g--------~~~~~~~~~~~ 84 (193)
.++.++|+++|.+|||||||+|++.+........ |.........+.+..+.+||||| ++.+......+
T Consensus 20 ~m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~ 99 (456)
T 4dcu_A 20 HMGKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIA 99 (456)
T ss_dssp ---CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHH
T ss_pred hcCCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhh
Confidence 3457899999999999999999999877653322 33344445556678999999999 77778888888
Q ss_pred hccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCC
Q 029453 85 YAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTN 164 (193)
Q Consensus 85 ~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (193)
+..+|++++|+|..++ +.....++..++.. .++|+++|+||+|+.... .+..+.+..
T Consensus 100 ~~~ad~il~VvD~~~~--~~~~d~~l~~~l~~---~~~pvilV~NK~D~~~~~--~~~~e~~~l---------------- 156 (456)
T 4dcu_A 100 MDEADVIIFMVNGREG--VTAADEEVAKILYR---TKKPVVLAVNKLDNTEMR--ANIYDFYSL---------------- 156 (456)
T ss_dssp HHHCSEEEEEEESSSC--SCHHHHHHHHHHTT---CCSCEEEEEECC-----------CCSGGG----------------
T ss_pred HhhCCEEEEEEeCCCC--CChHHHHHHHHHHH---cCCCEEEEEECccchhhh--hhHHHHHHc----------------
Confidence 9999999999998775 34445566666654 589999999999986321 111111111
Q ss_pred CccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 165 VRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 165 ~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
.....+++||++|.|+.++++++.+.+
T Consensus 157 -g~~~~~~iSA~~g~gv~~L~~~i~~~l 183 (456)
T 4dcu_A 157 -GFGEPYPISGTHGLGLGDLLDAVAEHF 183 (456)
T ss_dssp -SSSSEEECCTTTCTTHHHHHHHHHTTG
T ss_pred -CCCceEEeecccccchHHHHHHHHhhc
Confidence 112357999999999999999987654
No 142
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.87 E-value=6.6e-22 Score=146.16 Aligned_cols=158 Identities=11% Similarity=0.034 Sum_probs=103.4
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccc--cC---CCCCcceeEEEeCCeEEEEEEcCChhhh-----------HHh
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQ--HQ---PTQYPTSEELSIGKIKFKAFDLGGHQMA-----------RRV 80 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~--~~---~t~~~~~~~~~~~~~~~~~~D~~g~~~~-----------~~~ 80 (193)
..+.++|+++|++|||||||++++.+..... .. .|.........+.+..+.+|||||+..+ ...
T Consensus 19 ~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~ 98 (260)
T 2xtp_A 19 SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRC 98 (260)
T ss_dssp --CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHHHH
Confidence 4467899999999999999999999877332 22 2444555677788899999999997643 222
Q ss_pred HHhhhccCCEEEEEEeCCChhhH-HHHHHHHHHHHhCCCCCCCcEEEEee-CCCCCCCCCHHH------------HHHhh
Q 029453 81 WKDYYAKVDAVVYLIDAYDKERF-SESKRELDALLSDEALADVPFLILGN-KIDIPYAASEDE------------LRYHM 146 (193)
Q Consensus 81 ~~~~~~~~d~ii~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~pviiv~n-K~Dl~~~~~~~~------------~~~~~ 146 (193)
...++..+|++++|+|+++.... .....++..++.. ....|+++++| |+|+... ...+ +...+
T Consensus 99 ~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~--~~~~~~i~vv~nK~Dl~~~-~~~~~i~~~~~~~~~~~~~~~ 175 (260)
T 2xtp_A 99 YLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGE--DAMGHTIVLFTHKEDLNGG-SLMDYMHDSDNKALSKLVAAC 175 (260)
T ss_dssp HHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCG--GGGGGEEEEEECGGGGTTC-CHHHHHHHCCCHHHHHHHHHT
T ss_pred HHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCc--hhhccEEEEEEcccccCCc-cHHHHHHhcchHHHHHHHHHh
Confidence 23456789999999999863221 2233444444321 11457777776 9999743 3333 22222
Q ss_pred CCCccccCCCcccCCCCCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 147 GLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
+... ..+..+++||+++.|++++|++|.+.+
T Consensus 176 ~~~~---------------~~~~~~~~SA~~~~gv~~l~~~i~~~~ 206 (260)
T 2xtp_A 176 GGRI---------------CAFNNRAEGSNQDDQVKELMDCIEDLL 206 (260)
T ss_dssp TTCE---------------EECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCeE---------------EEecCcccccccHHHHHHHHHHHHHHH
Confidence 2111 001117899999999999999997754
No 143
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.87 E-value=2.8e-21 Score=155.12 Aligned_cols=125 Identities=18% Similarity=0.127 Sum_probs=92.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcC------------------Cccc-------cCCCCCcceeEEEeCCeEEEEEEcCC
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDE------------------RLVQ-------HQPTQYPTSEELSIGKIKFKAFDLGG 73 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~------------------~~~~-------~~~t~~~~~~~~~~~~~~~~~~D~~g 73 (193)
+..+|+|+|++|||||||+++|... .... ...|.......+.+.+..+.+|||||
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG 91 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPG 91 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCC
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCC
Confidence 5679999999999999999999611 1111 12255566677888999999999999
Q ss_pred hhhhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC---HHHHHHhhCC
Q 029453 74 HQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAAS---EDELRYHMGL 148 (193)
Q Consensus 74 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~---~~~~~~~~~~ 148 (193)
+.++......++..+|++++|+|++++...+... .+..+. . .++|+++|+||+|+..... .+++.+.++.
T Consensus 92 ~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~-~~~~~~-~---~~iPiivviNK~Dl~~~~~~~~l~ei~~~l~~ 164 (528)
T 3tr5_A 92 HADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIK-LMEVCR-L---RHTPIMTFINKMDRDTRPSIELLDEIESILRI 164 (528)
T ss_dssp STTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHH-HHHHHH-T---TTCCEEEEEECTTSCCSCHHHHHHHHHHHHCC
T ss_pred chhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH-HHHHHH-H---cCCCEEEEEeCCCCccccHHHHHHHHHHhhCC
Confidence 9999888889999999999999999865444433 333332 2 4789999999999964432 2335555543
No 144
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.87 E-value=3.2e-21 Score=148.48 Aligned_cols=153 Identities=20% Similarity=0.140 Sum_probs=104.7
Q ss_pred ccE-EEEEcCCCCCHHHHHHHHhcCCccc---cCCCCCcceeEEEeCCeEEEEEEcCCh---------hhhHHhHHhhhc
Q 029453 20 EAK-ILFLGLDNSGKTTLLHMLKDERLVQ---HQPTQYPTSEELSIGKIKFKAFDLGGH---------QMARRVWKDYYA 86 (193)
Q Consensus 20 ~~~-i~i~G~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~D~~g~---------~~~~~~~~~~~~ 86 (193)
.++ |+++|++|||||||+|++.+..... ..+|.++....+.+++..+.+|||+|. +.+...+ ..+.
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lve~f~~tl-~~~~ 256 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDAFFVTL-SEAK 256 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEEEECCCBCSSCCGGGHHHHHHHH-HGGG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHHHHHHHHHHH-HHHH
Confidence 455 9999999999999999999877531 234666777888898899999999996 2333333 3568
Q ss_pred cCCEEEEEEeCCChh--hHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHH---HH----HhhCCCccccCCCc
Q 029453 87 KVDAVVYLIDAYDKE--RFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDE---LR----YHMGLTNFTTGKGN 157 (193)
Q Consensus 87 ~~d~ii~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~---~~----~~~~~~~~~~~~~~ 157 (193)
.+|++++|+|++++. .......+ ..++......+.|+++|+||+|+.... ..+ .. ..+..
T Consensus 257 ~aD~il~VvD~s~~~~~~~~~~~~~-~~~L~~l~~~~~p~ilV~NK~Dl~~~~-~~~~~~~~~~l~~~l~~--------- 325 (364)
T 2qtf_A 257 YSDALILVIDSTFSENLLIETLQSS-FEILREIGVSGKPILVTLNKIDKINGD-LYKKLDLVEKLSKELYS--------- 325 (364)
T ss_dssp GSSEEEEEEETTSCHHHHHHHHHHH-HHHHHHHTCCSCCEEEEEECGGGCCSC-HHHHHHHHHHHHHHHCS---------
T ss_pred hCCEEEEEEECCCCcchHHHHHHHH-HHHHHHhCcCCCCEEEEEECCCCCCch-HHHHHHHHHHHHHHhcC---------
Confidence 899999999998875 33333222 233333233578999999999997543 222 11 11100
Q ss_pred ccCCCCCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 158 VNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 158 ~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
...+++++||+++.|+++++++|.+.+
T Consensus 326 --------~~~~~~~~SA~~g~gi~~L~~~I~~~l 352 (364)
T 2qtf_A 326 --------PIFDVIPISALKRTNLELLRDKIYQLA 352 (364)
T ss_dssp --------CEEEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred --------CCCcEEEEECCCCcCHHHHHHHHHHHh
Confidence 124679999999999999999997754
No 145
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.87 E-value=1.7e-22 Score=142.71 Aligned_cols=130 Identities=23% Similarity=0.330 Sum_probs=94.0
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCeEEEEEEcCChhhhHHhHHhhhcc----CCEEE
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMARRVWKDYYAK----VDAVV 92 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~----~d~ii 92 (193)
..+.++|+++|++|||||||++++.+..+.....+..+.. ...+....+.+|||||++.+...+..++.. +|+++
T Consensus 45 ~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i 123 (193)
T 2ged_A 45 GSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLS-AADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLI 123 (193)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHHHHSSCC-------------CCCCTTCSEEEETTCCBSSCCHHHHHHHHGGGEEEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCce-eeeecCCeEEEEECCCCchHHHHHHHHHHhhcccCCEEE
Confidence 3577899999999999999999999887543221111111 112256778999999998876666666654 89999
Q ss_pred EEEeCC-ChhhHHHHHHHHHHHHhCC---CCCCCcEEEEeeCCCCCCCCCHHHHHHhhC
Q 029453 93 YLIDAY-DKERFSESKRELDALLSDE---ALADVPFLILGNKIDIPYAASEDELRYHMG 147 (193)
Q Consensus 93 ~v~d~~-~~~~~~~~~~~~~~~~~~~---~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~ 147 (193)
+|+|++ +.+++.....++..++... ...+.|+++|+||+|+......+++...+.
T Consensus 124 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~ 182 (193)
T 2ged_A 124 FMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALE 182 (193)
T ss_dssp EEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHH
T ss_pred EEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHHHHHHHHH
Confidence 999999 8888888888887776432 225799999999999987767666555543
No 146
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.87 E-value=4.8e-22 Score=152.20 Aligned_cols=134 Identities=17% Similarity=0.297 Sum_probs=99.8
Q ss_pred CcceeEEEeCCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCC----------hhhHHHHHHHHHHHHhCCCCCCC
Q 029453 53 YPTSEELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYD----------KERFSESKRELDALLSDEALADV 122 (193)
Q Consensus 53 ~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~ 122 (193)
+.....+.+++..+.+||++|++.++..|..++++++++|+|+|+++ ..++.+...++..+.+.....+.
T Consensus 182 Gi~~~~~~~~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~ 261 (353)
T 1cip_A 182 GIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDT 261 (353)
T ss_dssp SEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTS
T ss_pred ceEEEEEeeCCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCC
Confidence 44445667788999999999999999999999999999999999998 56799999999999875555689
Q ss_pred cEEEEeeCCCCCC-----------------CCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeeecCCChhHHH
Q 029453 123 PFLILGNKIDIPY-----------------AASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGF 185 (193)
Q Consensus 123 pviiv~nK~Dl~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~ 185 (193)
|+++++||+|+.. ..+.++........+..-.. ......+.+++|||+++.|++++|
T Consensus 262 piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~------~~~~~~~~~~etSA~~~~nV~~vF 335 (353)
T 1cip_A 262 SIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNK------RKDTKEIYTHFTCATDTKNVQFVF 335 (353)
T ss_dssp EEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCS------CTTTCCEEEEECCTTCHHHHHHHH
T ss_pred cEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhc------ccCCCceEEEEEECcCchhHHHHH
Confidence 9999999999851 12333333222211100000 000145789999999999999999
Q ss_pred Hhhhhhc
Q 029453 186 KWLSQYI 192 (193)
Q Consensus 186 ~~i~~~l 192 (193)
+++.+.+
T Consensus 336 ~~v~~~i 342 (353)
T 1cip_A 336 DAVTDVI 342 (353)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9987653
No 147
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.87 E-value=2.9e-21 Score=151.34 Aligned_cols=159 Identities=19% Similarity=0.152 Sum_probs=105.1
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccc----cCC--CCCcceeEEEe------------------C-----CeEEE
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQ----HQP--TQYPTSEELSI------------------G-----KIKFK 67 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~----~~~--t~~~~~~~~~~------------------~-----~~~~~ 67 (193)
.+..++|+++|++++|||||+++|.+..... ..+ |.........+ + ...+.
T Consensus 7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 86 (410)
T 1kk1_A 7 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS 86 (410)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEE
Confidence 4567899999999999999999998543221 112 33332222222 0 26899
Q ss_pred EEEcCChhhhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCH----HHHH
Q 029453 68 AFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASE----DELR 143 (193)
Q Consensus 68 ~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~----~~~~ 143 (193)
+||||||+.+...+......+|++++|+|++++.........+..+... ...|+++++||+|+...... +++.
T Consensus 87 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~---~~~~iivviNK~Dl~~~~~~~~~~~~i~ 163 (410)
T 1kk1_A 87 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII---GQKNIIIAQNKIELVDKEKALENYRQIK 163 (410)
T ss_dssp EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCHHHHHHHHHHHH
T ss_pred EEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHc---CCCcEEEEEECccCCCHHHHHHHHHHHH
Confidence 9999999999888888888999999999998642111111111111111 23689999999999743211 1233
Q ss_pred HhhCCCccccCCCcccCCCCCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 144 YHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
+.+... .....+++++||++|.|+++++++|.+.+
T Consensus 164 ~~l~~~--------------~~~~~~~i~vSA~~g~gi~~L~~~l~~~~ 198 (410)
T 1kk1_A 164 EFIEGT--------------VAENAPIIPISALHGANIDVLVKAIEDFI 198 (410)
T ss_dssp HHHTTS--------------TTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred HHHHhc--------------CcCCCeEEEeeCCCCCCHHHHHHHHHHhC
Confidence 222211 11346899999999999999999998754
No 148
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.87 E-value=1.4e-21 Score=158.45 Aligned_cols=152 Identities=20% Similarity=0.210 Sum_probs=104.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC--ccc---------c---CC----CCCcceeEEEeC-----CeEEEEEEcCChh
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDER--LVQ---------H---QP----TQYPTSEELSIG-----KIKFKAFDLGGHQ 75 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~--~~~---------~---~~----t~~~~~~~~~~~-----~~~~~~~D~~g~~ 75 (193)
+-.+|+++|++++|||||++++.... ... . +. |.......+.+. +..+.+||||||.
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 34689999999999999999997522 110 0 01 222223344443 3789999999999
Q ss_pred hhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCH---HHHHHhhCCCccc
Q 029453 76 MARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASE---DELRYHMGLTNFT 152 (193)
Q Consensus 76 ~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~---~~~~~~~~~~~~~ 152 (193)
+|...+...+..+|++++|+|++++...+....|..... .++|+++++||+|+...... +++.+.++...
T Consensus 83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~-----~~ipiIvViNKiDl~~a~~~~v~~ei~~~lg~~~-- 155 (599)
T 3cb4_D 83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME-----MDLEVVPVLNKIDLPAADPERVAEEIEDIVGIDA-- 155 (599)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH-----TTCEEEEEEECTTSTTCCHHHHHHHHHHHTCCCC--
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH-----CCCCEEEeeeccCcccccHHHHHHHHHHHhCCCc--
Confidence 999988899999999999999998765666555554442 47899999999999754322 22333333221
Q ss_pred cCCCcccCCCCCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 153 TGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
.+++++||++|.|+++++++|.+.+
T Consensus 156 ---------------~~vi~vSAktg~GI~~Ll~~I~~~l 180 (599)
T 3cb4_D 156 ---------------TDAVRCSAKTGVGVQDVLERLVRDI 180 (599)
T ss_dssp ---------------TTCEEECTTTCTTHHHHHHHHHHHS
T ss_pred ---------------ceEEEeecccCCCchhHHHHHhhcC
Confidence 2479999999999999999998764
No 149
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.87 E-value=2.2e-21 Score=157.18 Aligned_cols=155 Identities=20% Similarity=0.200 Sum_probs=107.0
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC--ccc---------c---C----CCCCcceeEEEeC-----CeEEEEEEcCChh
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDER--LVQ---------H---Q----PTQYPTSEELSIG-----KIKFKAFDLGGHQ 75 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~--~~~---------~---~----~t~~~~~~~~~~~-----~~~~~~~D~~g~~ 75 (193)
+-.+|+++|++++|||||++++.... ... . + .|.......+.+. ...+.+||||||.
T Consensus 5 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~ 84 (600)
T 2ywe_A 5 NVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHV 84 (600)
T ss_dssp GEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcH
Confidence 45699999999999999999996521 110 0 0 1222223344442 3688999999999
Q ss_pred hhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCC
Q 029453 76 MARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGK 155 (193)
Q Consensus 76 ~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 155 (193)
+|.......+..+|++++|+|++++...+....|..... .++|+++++||+|+.... .++..+.+.... .
T Consensus 85 dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~-----~~ipiIvviNKiDl~~a~-~~~v~~el~~~l---g- 154 (600)
T 2ywe_A 85 DFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE-----QDLVIIPVINKIDLPSAD-VDRVKKQIEEVL---G- 154 (600)
T ss_dssp GGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH-----TTCEEEEEEECTTSTTCC-HHHHHHHHHHTS---C-
T ss_pred hHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH-----CCCCEEEEEeccCccccC-HHHHHHHHHHhh---C-
Confidence 999888888999999999999999866666655555442 478999999999997543 333222222111 0
Q ss_pred CcccCCCCCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 156 GNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
....+++++||++|.|+++++++|.+.+
T Consensus 155 ---------~~~~~vi~vSAktg~GI~~Lle~I~~~l 182 (600)
T 2ywe_A 155 ---------LDPEEAILASAKEGIGIEEILEAIVNRI 182 (600)
T ss_dssp ---------CCGGGCEECBTTTTBSHHHHHHHHHHHS
T ss_pred ---------CCcccEEEEEeecCCCchHHHHHHHHhc
Confidence 0112479999999999999999998764
No 150
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.86 E-value=4.7e-23 Score=163.72 Aligned_cols=159 Identities=19% Similarity=0.180 Sum_probs=107.4
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCccccC---CCCCcceeEEEeCCeEEEEEEcCChhhhHHhHHhhhccCCEEEEE
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQHQ---PTQYPTSEELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYL 94 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~---~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 94 (193)
.+.++|+++|++++|||||++++.+....... .|.......+.+++..+.+||||||+.|...+...+..+|++++|
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aILV 81 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETENGMITFLDTPGHAAFTSMRARGAQATDIVVLV 81 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTTSBCSSSBSCSSEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECCEEEEEEECCCcHHHHHHHHHHHhhCCEEEEE
Confidence 46789999999999999999999865443221 133333334455667899999999999988887888899999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEe
Q 029453 95 IDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCS 174 (193)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 174 (193)
+|++++...+... .+..+. . .+.|+++++||+|+..... +++...+.... ..+..+....+++++|
T Consensus 82 Vda~~g~~~qT~e-~l~~~~-~---~~vPiIVviNKiDl~~~~~-~~v~~~l~~~~--------~~~~~~~~~~~~v~vS 147 (501)
T 1zo1_I 82 VAADDGVMPQTIE-AIQHAK-A---AQVPVVVAVNKIDKPEADP-DRVKNELSQYG--------ILPEEWGGESQFVHVS 147 (501)
T ss_dssp EETTTBSCTTTHH-HHHHHH-H---TTCCEEEEEECSSSSTTCC-CCTTCCCCCCC--------CCTTCCSSSCEEEECC
T ss_pred eecccCccHHHHH-HHHHHH-h---cCceEEEEEEeccccccCH-HHHHHHHHHhh--------hhHHHhCCCccEEEEe
Confidence 9998742111111 122221 1 4789999999999964221 11111111100 0111122347899999
Q ss_pred eecCCChhHHHHhhhh
Q 029453 175 IVRKMGYGEGFKWLSQ 190 (193)
Q Consensus 175 a~~~~gi~~~~~~i~~ 190 (193)
|++|.|+++++++|..
T Consensus 148 AktG~gI~eLle~I~~ 163 (501)
T 1zo1_I 148 AKAGTGIDELLDAILL 163 (501)
T ss_dssp TTTCTTCTTHHHHTTT
T ss_pred eeeccCcchhhhhhhh
Confidence 9999999999999865
No 151
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.86 E-value=9.9e-22 Score=155.22 Aligned_cols=156 Identities=20% Similarity=0.230 Sum_probs=104.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCcc--ccCC--CCCcceeEEEeCCeEEEEEEcCChhhhHHh------------HH
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERLV--QHQP--TQYPTSEELSIGKIKFKAFDLGGHQMARRV------------WK 82 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~------------~~ 82 (193)
..++|+++|++|||||||+|++.+.... ...+ |..+....+.+++..+.+|||||..+.... ..
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~ 258 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVV 258 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHH
Confidence 4589999999999999999999988653 2222 445566778888999999999997543221 12
Q ss_pred hhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCC--CHHHHHHhhCCCccccCCCcccC
Q 029453 83 DYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAA--SEDELRYHMGLTNFTTGKGNVNL 160 (193)
Q Consensus 83 ~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 160 (193)
.++..+|++++|+|++++.+.+. ..+...+.. .++|+++|+||+|+.... ..+++...+.....
T Consensus 259 ~~i~~ad~vllv~d~~~~~~~~~--~~i~~~l~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~--------- 324 (439)
T 1mky_A 259 DSIEKADVVVIVLDATQGITRQD--QRMAGLMER---RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLY--------- 324 (439)
T ss_dssp HHHHHCSEEEEEEETTTCCCHHH--HHHHHHHHH---TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCG---------
T ss_pred HHHhhCCEEEEEEeCCCCCCHHH--HHHHHHHHH---cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhc---------
Confidence 35678999999999987654433 223333332 479999999999997432 23333322211110
Q ss_pred CCCCCccEEEEEEeeecCCChhHHHHhhhhh
Q 029453 161 DNTNVRPLEVFMCSIVRKMGYGEGFKWLSQY 191 (193)
Q Consensus 161 ~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~ 191 (193)
.....+++++||++|.|++++++.|.+.
T Consensus 325 ---~~~~~~~~~~SA~~g~gv~~l~~~i~~~ 352 (439)
T 1mky_A 325 ---FIDYSPLIFTSADKGWNIDRMIDAMNLA 352 (439)
T ss_dssp ---GGTTSCEEECBTTTTBSHHHHHHHHHHH
T ss_pred ---cCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 0123578999999999999999998764
No 152
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.86 E-value=9.2e-22 Score=157.06 Aligned_cols=158 Identities=17% Similarity=0.050 Sum_probs=103.8
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCcc------------------------------c----cCCCCCcceeEEEeC
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLV------------------------------Q----HQPTQYPTSEELSIG 62 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~------------------------------~----~~~t~~~~~~~~~~~ 62 (193)
.+..+||+++|.+|+|||||+++|.+.... . ...|.......+...
T Consensus 30 ~k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 109 (483)
T 3p26_A 30 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH 109 (483)
T ss_dssp SCCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecC
Confidence 567899999999999999999999754110 0 011444455667778
Q ss_pred CeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCChhhHH-----HHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCC
Q 029453 63 KIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFS-----ESKRELDALLSDEALADVPFLILGNKIDIPYAA 137 (193)
Q Consensus 63 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~-----~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~ 137 (193)
+..+.+|||||++++...+..++..+|++++|+|++++.... ........+.... ...|+++|+||+|+....
T Consensus 110 ~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~--~~~~iIvviNK~Dl~~~~ 187 (483)
T 3p26_A 110 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL--GIHNLIIAMNKMDNVDWS 187 (483)
T ss_dssp SCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT--TCCCEEEEEECGGGGTTC
T ss_pred CceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc--CCCcEEEEEECcCcccch
Confidence 899999999999999999999999999999999999864322 1222232332221 235799999999997421
Q ss_pred --CHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeeecCCChhHH
Q 029453 138 --SEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEG 184 (193)
Q Consensus 138 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~ 184 (193)
..++....+....-.... ....++++++||++|.|++++
T Consensus 188 ~~~~~~i~~~~~~~l~~~g~--------~~~~~~~i~iSA~~g~gi~el 228 (483)
T 3p26_A 188 QQRFEEIKSKLLPYLVDIGF--------FEDNINWVPISGFSGEGVYKI 228 (483)
T ss_dssp HHHHHHHHHHHHHHHHHHTC--------CGGGEEEEECCSSSCTTSSSS
T ss_pred HHHHHHHHHHHHHHHHHcCC--------CcccceEEEEeeecCCCcccc
Confidence 112222222111000000 013578999999999999864
No 153
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.86 E-value=5.8e-21 Score=143.66 Aligned_cols=171 Identities=13% Similarity=0.096 Sum_probs=107.4
Q ss_pred cHHHHHHHHHHHhCC-----CCcccEEEEEcCCCCCHHHHHHHHhcCCccccC---CCCCcce-----------------
Q 029453 2 FLVDWFYGILVSLGL-----WQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQ---PTQYPTS----------------- 56 (193)
Q Consensus 2 ~~~~~~~~~~~~~~~-----~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~---~t~~~~~----------------- 56 (193)
.++..+..+...+.. ....++|+++|.+|||||||+|++.+..+.... .+..+..
T Consensus 3 ~~~~~~~~l~~~l~~~~~~~~~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~ 82 (299)
T 2aka_B 3 DLIPLVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCK 82 (299)
T ss_dssp THHHHHHHHHHHHTTSCCCTTCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTST
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcC
Confidence 355555555444332 236679999999999999999999988764111 0111110
Q ss_pred ----------------------------------eEEEeC-CeEEEEEEcCChh-------------hhHHhHHhhhccC
Q 029453 57 ----------------------------------EELSIG-KIKFKAFDLGGHQ-------------MARRVWKDYYAKV 88 (193)
Q Consensus 57 ----------------------------------~~~~~~-~~~~~~~D~~g~~-------------~~~~~~~~~~~~~ 88 (193)
..+... ...+.+|||||.. .+......++..+
T Consensus 83 g~~~tt~~~~~~~~~~~~~~i~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (299)
T 2aka_B 83 GKKFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKE 162 (299)
T ss_dssp TCCBCCHHHHHHHHHHHHHHHCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTST
T ss_pred CcccCCHHHHHHHHHHHHHHhcccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCC
Confidence 001111 3689999999953 3455667788888
Q ss_pred CEEE-EEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC--HHHHHHhhCCCccccCCCcccCCCCCC
Q 029453 89 DAVV-YLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAAS--EDELRYHMGLTNFTTGKGNVNLDNTNV 165 (193)
Q Consensus 89 d~ii-~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (193)
+.++ +|+|+++.........++..+ .. .+.|+++|+||+|+..... .+.+...+ .. ...
T Consensus 163 ~~~il~v~d~~~~~~~~~~~~~~~~~-~~---~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~--~~------------~~~ 224 (299)
T 2aka_B 163 NCLILAVSPANSDLANSDALKIAKEV-DP---QGQRTIGVITKLDLMDEGTDARDVLENKL--LP------------LRR 224 (299)
T ss_dssp TEEEEEEEESSSCGGGCHHHHHHHHH-CT---TCSSEEEEEECGGGSCTTCCCHHHHTTCS--SC------------CTT
T ss_pred CeEEEEEecCCcchhhhHHHHHHHHh-CC---CCCeEEEEEEccccCCCCchHHHHHhCCc--Cc------------CCC
Confidence 8776 799998753333322333333 22 4789999999999974322 22221110 00 001
Q ss_pred ccEEEEEEeeecCCChhHHHHhhhh
Q 029453 166 RPLEVFMCSIVRKMGYGEGFKWLSQ 190 (193)
Q Consensus 166 ~~~~~~~~Sa~~~~gi~~~~~~i~~ 190 (193)
...+++++||++|.|+++++++|.+
T Consensus 225 ~~~~v~~~SA~~~~gi~~l~~~l~~ 249 (299)
T 2aka_B 225 GYIGVVNRSQKDIDGKKDITAALAA 249 (299)
T ss_dssp CEEECCCCCCBCTTSCBCHHHHHHH
T ss_pred CcEEEECCChhhccccccHHHHHHH
Confidence 2357899999999999999999764
No 154
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.86 E-value=9.5e-21 Score=149.41 Aligned_cols=160 Identities=20% Similarity=0.183 Sum_probs=102.4
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCcc--c--------------------------------cCCCCCcceeEEEeC
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLV--Q--------------------------------HQPTQYPTSEELSIG 62 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~--~--------------------------------~~~t~~~~~~~~~~~ 62 (193)
.+..++|+++|.+++|||||+++|.+..-. . ...|.......+...
T Consensus 14 ~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~ 93 (439)
T 3j2k_7 14 KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETE 93 (439)
T ss_pred CCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecC
Confidence 346789999999999999999999543211 0 001223334456677
Q ss_pred CeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCChhh---HH--HHHHHHHHHHhCCCCCCCc-EEEEeeCCCCCCC
Q 029453 63 KIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKER---FS--ESKRELDALLSDEALADVP-FLILGNKIDIPYA 136 (193)
Q Consensus 63 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~---~~--~~~~~~~~~~~~~~~~~~p-viiv~nK~Dl~~~ 136 (193)
+..+.+||||||+++...+..++..+|++++|+|++++.. +. ........++.. .+.| +++++||+|+...
T Consensus 94 ~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~---~~v~~iIvviNK~Dl~~~ 170 (439)
T 3j2k_7 94 KKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT---AGVKHLIVLINKMDDPTV 170 (439)
T ss_pred CeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH---cCCCeEEEEeecCCCccc
Confidence 8899999999999999988899999999999999988631 11 111111122222 3566 9999999999632
Q ss_pred CC----HHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeeecCCChhHHHH
Q 029453 137 AS----EDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFK 186 (193)
Q Consensus 137 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~ 186 (193)
.. .++...++....-..... ....++++++||++|.|++++.+
T Consensus 171 ~~~~~~~~~i~~~~~~~l~~~g~~-------~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 171 NWSNERYEECKEKLVPFLKKVGFN-------PKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred chHHHHHHHHHHHHHHHHHHhccc-------ccCCeeEEEeeccCCcccccccc
Confidence 11 112222221100000000 00246899999999999998544
No 155
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.86 E-value=6.7e-22 Score=161.25 Aligned_cols=158 Identities=17% Similarity=0.065 Sum_probs=105.2
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccc----------------------------------cCCCCCcceeEEEeC
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQ----------------------------------HQPTQYPTSEELSIG 62 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~----------------------------------~~~t~~~~~~~~~~~ 62 (193)
.+..++|+++|++|+|||||+++|.+..... ...|.......+...
T Consensus 164 ~k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~ 243 (611)
T 3izq_1 164 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH 243 (611)
T ss_dssp CCCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECS
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecC
Confidence 4568999999999999999999998663221 112445556677788
Q ss_pred CeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCChhh---H--HHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCC
Q 029453 63 KIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKER---F--SESKRELDALLSDEALADVPFLILGNKIDIPYAA 137 (193)
Q Consensus 63 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~---~--~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~ 137 (193)
+..+.+||||||+++...+..++..+|++|+|+|++++.. + .........+.... ...|+++|+||+|+....
T Consensus 244 ~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~l--gi~~iIVVvNKiDl~~~~ 321 (611)
T 3izq_1 244 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL--GIHNLIIAMNKMDNVDWS 321 (611)
T ss_dssp SCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTT--TCCEEEEEEECTTTTTTC
T ss_pred CceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHc--CCCeEEEEEecccccchh
Confidence 8999999999999999888888999999999999987421 0 11222222222221 234599999999997521
Q ss_pred --CHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeeecCCChhHH
Q 029453 138 --SEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEG 184 (193)
Q Consensus 138 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~ 184 (193)
..++....+......... ....++++++||++|.|+.++
T Consensus 322 ~~~~~ei~~~l~~~l~~~g~--------~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 322 QQRFEEIKSKLLPYLVDIGF--------FEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp HHHHHHHHHHHHHHHHHHTC--------CGGGCEEEECCTTTCTTTSSC
T ss_pred HHHHHHHHHHHHHHHHhhcc--------cccCccEEeeecccCCCcccc
Confidence 112222222111000000 003468999999999999876
No 156
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.85 E-value=4.9e-21 Score=149.84 Aligned_cols=160 Identities=19% Similarity=0.190 Sum_probs=107.8
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHHhcC--------Cccc------------cCCCCCcceeEEEeCCeEEEEEEcCChh
Q 029453 16 LWQKEAKILFLGLDNSGKTTLLHMLKDE--------RLVQ------------HQPTQYPTSEELSIGKIKFKAFDLGGHQ 75 (193)
Q Consensus 16 ~~~~~~~i~i~G~~~~GKssl~~~l~~~--------~~~~------------~~~t~~~~~~~~~~~~~~~~~~D~~g~~ 75 (193)
..+..++|+++|++|+|||||+++|.+. .+.. ...|.......+...+..+.+||||||+
T Consensus 7 ~~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~ 86 (405)
T 2c78_A 7 RTKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHA 86 (405)
T ss_dssp --CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSG
T ss_pred CCCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChH
Confidence 3457799999999999999999999863 1111 0113333344556667899999999999
Q ss_pred hhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCc-EEEEeeCCCCCCCCC-HH----HHHHhhCCC
Q 029453 76 MARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVP-FLILGNKIDIPYAAS-ED----ELRYHMGLT 149 (193)
Q Consensus 76 ~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-viiv~nK~Dl~~~~~-~~----~~~~~~~~~ 149 (193)
++...+..++..+|++++|+|++++... ....++..+. . .++| +++++||+|+..... .+ ++...+...
T Consensus 87 ~f~~~~~~~~~~aD~~ilVvda~~g~~~-qt~~~l~~~~-~---~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~ 161 (405)
T 2c78_A 87 DYIKNMITGAAQMDGAILVVSAADGPMP-QTREHILLAR-Q---VGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQY 161 (405)
T ss_dssp GGHHHHHHHHTTCSSEEEEEETTTCCCH-HHHHHHHHHH-H---TTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCcH-HHHHHHHHHH-H---cCCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHh
Confidence 9988888889999999999999886432 2233333332 2 3677 899999999974211 11 111111111
Q ss_pred ccccCCCcccCCCCCCccEEEEEEeeecCCC------------------hhHHHHhhhhhc
Q 029453 150 NFTTGKGNVNLDNTNVRPLEVFMCSIVRKMG------------------YGEGFKWLSQYI 192 (193)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g------------------i~~~~~~i~~~l 192 (193)
.+ .....+++++||++|.| +.++++.|.+.+
T Consensus 162 ~~------------~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 210 (405)
T 2c78_A 162 EF------------PGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYI 210 (405)
T ss_dssp TS------------CTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHS
T ss_pred cc------------cccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhc
Confidence 00 00235799999999987 788888887643
No 157
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.85 E-value=5e-21 Score=144.71 Aligned_cols=134 Identities=14% Similarity=0.223 Sum_probs=98.9
Q ss_pred CCCcceeEEEeCCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCC----------ChhhHHHHHHHHHHHHhCCCCC
Q 029453 51 TQYPTSEELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAY----------DKERFSESKRELDALLSDEALA 120 (193)
Q Consensus 51 t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~~~~~~~~~~~~~~~~~~~~ 120 (193)
|.+.....+..++..+.+||++|++.++..|..++++++++|+|+|++ +..++.+...++..+.+.....
T Consensus 154 TiGi~~~~~~~~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~ 233 (327)
T 3ohm_A 154 TTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQ 233 (327)
T ss_dssp CCSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGT
T ss_pred eeeEEEEEEEeeceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccC
Confidence 334455667788899999999999999999999999999999999654 6778899999999998766567
Q ss_pred CCcEEEEeeCCCCCC------------------CCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeeecCCChh
Q 029453 121 DVPFLILGNKIDIPY------------------AASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYG 182 (193)
Q Consensus 121 ~~pviiv~nK~Dl~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 182 (193)
+.|+++++||+|+.. ..+.++........+... .......+.++.+||+++.||+
T Consensus 234 ~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~-------~~~~~~~i~~~~TsA~d~~nV~ 306 (327)
T 3ohm_A 234 NSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDL-------NPDSDKIIYSHFTCATDTENIR 306 (327)
T ss_dssp TCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSS-------CTTTTSCEEEEECCTTCHHHHH
T ss_pred CceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhh-------cccccCCcEEEEEEeecCHHHH
Confidence 899999999999852 122222222211111000 0011145788999999999999
Q ss_pred HHHHhhhhh
Q 029453 183 EGFKWLSQY 191 (193)
Q Consensus 183 ~~~~~i~~~ 191 (193)
++|+.+.+.
T Consensus 307 ~vF~~v~~~ 315 (327)
T 3ohm_A 307 FVFAAVKDT 315 (327)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998764
No 158
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.85 E-value=2.8e-21 Score=148.46 Aligned_cols=130 Identities=17% Similarity=0.357 Sum_probs=90.0
Q ss_pred eeEEEeCCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCC----------hhhHHHHHHHHHHHHhCCCCCCCcEE
Q 029453 56 SEELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYD----------KERFSESKRELDALLSDEALADVPFL 125 (193)
Q Consensus 56 ~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~pvi 125 (193)
...+.+++..+.+|||+|++.++..|..++++++++|+|+|+++ ..++.+...++..+.+.....+.|++
T Consensus 193 ~~~~~~~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piI 272 (362)
T 1zcb_A 193 EYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSII 272 (362)
T ss_dssp EEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEE
T ss_pred EEEeeeCCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEE
Confidence 34566778999999999999999999999999999999999998 77899999999999876445689999
Q ss_pred EEeeCCCCCC------------------CCCHHHHHHhhCCCccccCCCcccCCCCC-CccEEEEEEeeecCCChhHHHH
Q 029453 126 ILGNKIDIPY------------------AASEDELRYHMGLTNFTTGKGNVNLDNTN-VRPLEVFMCSIVRKMGYGEGFK 186 (193)
Q Consensus 126 iv~nK~Dl~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~gi~~~~~ 186 (193)
+++||+|+.. ..+.++........+ .. +.... ...+.++++||+++.|++++|+
T Consensus 273 Lv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f-~~------l~~~~~~~~~~~~~tSA~d~~nV~~vF~ 345 (362)
T 1zcb_A 273 LFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECF-RG------KRRDQQQRPLYHHFTTAINTENIRLVFR 345 (362)
T ss_dssp EEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHH-HT------TCSSCC--CCEEEECCTTCHHHHHHHHH
T ss_pred EEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHH-HH------hhcccCCCceEEEEEecCCchhHHHHHH
Confidence 9999999851 123333322210000 00 00000 1346889999999999999999
Q ss_pred hhhhhc
Q 029453 187 WLSQYI 192 (193)
Q Consensus 187 ~i~~~l 192 (193)
++.+.+
T Consensus 346 ~v~~~i 351 (362)
T 1zcb_A 346 DVKDTI 351 (362)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 987643
No 159
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.85 E-value=3.5e-21 Score=150.25 Aligned_cols=157 Identities=17% Similarity=0.131 Sum_probs=103.9
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC-------cccc------------CCCCCcceeEEEeCCeEEEEEEcCChhhhHH
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDER-------LVQH------------QPTQYPTSEELSIGKIKFKAFDLGGHQMARR 79 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~-------~~~~------------~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~ 79 (193)
+.++|+++|++++|||||+++|.+.. +... ..|.......+...+..+.+||||||++|..
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~ 81 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK 81 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence 56899999999999999999998631 1100 0022222223445678999999999999988
Q ss_pred hHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCc-EEEEeeCCCCCCCCC-HH----HHHHhhCCCcccc
Q 029453 80 VWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVP-FLILGNKIDIPYAAS-ED----ELRYHMGLTNFTT 153 (193)
Q Consensus 80 ~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-viiv~nK~Dl~~~~~-~~----~~~~~~~~~~~~~ 153 (193)
.+..++..+|++++|+|++++...+.. ..+..+ .. .++| +++++||+|+..... .+ ++.+.+....+
T Consensus 82 ~~~~~~~~aD~~ilVvda~~g~~~qt~-e~l~~~-~~---~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~-- 154 (397)
T 1d2e_A 82 NMITGTAPLDGCILVVAANDGPMPQTR-EHLLLA-RQ---IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGY-- 154 (397)
T ss_dssp HHHHTSSCCSEEEEEEETTTCSCHHHH-HHHHHH-HH---TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTS--
T ss_pred HHHhhHhhCCEEEEEEECCCCCCHHHH-HHHHHH-HH---cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCC--
Confidence 888889999999999999985432222 222222 22 3678 789999999974211 11 12222111100
Q ss_pred CCCcccCCCCCCccEEEEEEeeecCCC----------hhHHHHhhhhhc
Q 029453 154 GKGNVNLDNTNVRPLEVFMCSIVRKMG----------YGEGFKWLSQYI 192 (193)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~Sa~~~~g----------i~~~~~~i~~~l 192 (193)
.....+++++||++|.| +.++++.|.+.+
T Consensus 155 ----------~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~ 193 (397)
T 1d2e_A 155 ----------KGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYI 193 (397)
T ss_dssp ----------CTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHS
T ss_pred ----------CcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhC
Confidence 00235899999999875 889999987654
No 160
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.85 E-value=5.1e-21 Score=150.91 Aligned_cols=157 Identities=17% Similarity=0.129 Sum_probs=99.5
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcC--Cccc--------------------------------cCCCCCcceeEEEeCC
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDE--RLVQ--------------------------------HQPTQYPTSEELSIGK 63 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~--~~~~--------------------------------~~~t~~~~~~~~~~~~ 63 (193)
++.++|+++|++|+|||||+++|.+. .+.. ...|.......+...+
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~ 83 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK 83 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC
Confidence 46789999999999999999999754 2210 1123334445567778
Q ss_pred eEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCChhhHHHHH------HHHHHHHhCCCCCCCcEEEEeeCCCCCCCC
Q 029453 64 IKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESK------RELDALLSDEALADVPFLILGNKIDIPYAA 137 (193)
Q Consensus 64 ~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~------~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~ 137 (193)
..+.+||||||+++...+..++..+|++++|+|+++. +++... .....+.... ...|+++++||+|+....
T Consensus 84 ~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~g-sfe~~~~~~~qt~~~~~~~~~~--~~~~iivviNK~Dl~~~~ 160 (435)
T 1jny_A 84 YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKG-EYEAGMSVEGQTREHIILAKTM--GLDQLIVAVNKMDLTEPP 160 (435)
T ss_dssp CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTT-HHHHHHSTTCHHHHHHHHHHHT--TCTTCEEEEECGGGSSST
T ss_pred eEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCCC-ccccccccchHHHHHHHHHHHc--CCCeEEEEEEcccCCCcc
Confidence 8999999999999998888999999999999999983 444221 1122222221 224699999999997521
Q ss_pred -CH---HHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeeecCCChhHHH
Q 029453 138 -SE---DELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGF 185 (193)
Q Consensus 138 -~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~ 185 (193)
.. ++...++....-.... ....++++++||++|.|+.+++
T Consensus 161 ~~~~~~~~~~~~i~~~~~~~~~--------~~~~~~~i~iSA~~g~~v~e~~ 204 (435)
T 1jny_A 161 YDEKRYKEIVDQVSKFMRSYGF--------NTNKVRFVPVVAPSGDNITHKS 204 (435)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTC--------CCTTCEEEECBTTTTBTTTBCC
T ss_pred ccHHHHHHHHHHHHHHHHHcCC--------CcCCceEEEeecccCccccccc
Confidence 11 1111211111000000 0023689999999999998554
No 161
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.84 E-value=1.2e-20 Score=138.37 Aligned_cols=168 Identities=9% Similarity=0.050 Sum_probs=100.9
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCcccc-----CCCCCcceeEEEeCCeEEEEEEcCCh--------hhhHHhHHh
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQH-----QPTQYPTSEELSIGKIKFKAFDLGGH--------QMARRVWKD 83 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~-----~~t~~~~~~~~~~~~~~~~~~D~~g~--------~~~~~~~~~ 83 (193)
..+.++|+++|.+|||||||+|++.+...... ..|..........++..+.+|||||. +.+......
T Consensus 18 ~~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~~i~~ 97 (247)
T 3lxw_A 18 GESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFSSQVSKTDPGCEERGH 97 (247)
T ss_dssp --CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETTEEEEEEECCSCSSTTHHHHSTTSHHHHH
T ss_pred CCCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECCcEEEEEECCCCCCCCCCcHHHHHHHHHH
Confidence 35789999999999999999999998876532 13555666778888999999999995 333232333
Q ss_pred hh----ccCCEEEEEEeCCChhhH-HHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcc
Q 029453 84 YY----AKVDAVVYLIDAYDKERF-SESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNV 158 (193)
Q Consensus 84 ~~----~~~d~ii~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (193)
++ ..+|++++|+|+++.... .....++...+.. ...+.|+++++||+|+... ..++.........+....
T Consensus 98 ~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~-~~~~~~iilv~nK~Dl~~~-~~~~~l~~~~~~~l~~l~--- 172 (247)
T 3lxw_A 98 CYLLSAPGPHALLLVTQLGRFTAQDQQAVRQVRDMFGE-DVLKWMVIVFTRKEDLAGG-SLHDYVSNTENRALRELV--- 172 (247)
T ss_dssp HHHHHTTCCSEEEEEEETTBCCHHHHHHHHHHHHHHCG-GGGGGEEEEEECGGGGTTC-CHHHHHHHCCCHHHHHHH---
T ss_pred HHHhcCCCCCEEEEEEeCCCCCHHHHHHHHHHHHHhCh-hhhccEEEEEEchHhcCCC-CHHHHHhhcccHHHHHHH---
Confidence 33 889999999999853211 1233444444321 1136899999999999643 332222111000000000
Q ss_pred cCCCCCCccEEEEEEee---ecCCChhHHHHhhhhhc
Q 029453 159 NLDNTNVRPLEVFMCSI---VRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 159 ~~~~~~~~~~~~~~~Sa---~~~~gi~~~~~~i~~~l 192 (193)
........++..++ .++.|++++++.|.+.+
T Consensus 173 ---~~~g~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~ 206 (247)
T 3lxw_A 173 ---AECGGRVCAFDNRATGREQEAQVEQLLGMVEGLV 206 (247)
T ss_dssp ---HHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred ---HHcCCeEEEEeCCCCccccHHHHHHHHHHHHHHH
Confidence 00001122333333 23789999999987654
No 162
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.84 E-value=2.1e-20 Score=147.48 Aligned_cols=157 Identities=17% Similarity=0.092 Sum_probs=100.4
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCcc---cc----------CC-----------------------CCCcceeEEEe
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLV---QH----------QP-----------------------TQYPTSEELSI 61 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~---~~----------~~-----------------------t~~~~~~~~~~ 61 (193)
+..++|+++|.+++|||||+++|.+.... .. .. |.......+..
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~ 101 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST 101 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence 45689999999999999999999755311 00 00 11222334556
Q ss_pred CCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC--H
Q 029453 62 GKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAAS--E 139 (193)
Q Consensus 62 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~--~ 139 (193)
.+..+.+||||||+++...+..++..+|++++|+|++++...+ ...++..+ ... ...|+++|+||+|+..... .
T Consensus 102 ~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~q-t~~~l~~~-~~~--~~~~iIvviNK~Dl~~~~~~~~ 177 (434)
T 1zun_B 102 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQ-TRRHSYIA-SLL--GIKHIVVAINKMDLNGFDERVF 177 (434)
T ss_dssp SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHH-HHHHHHHH-HHT--TCCEEEEEEECTTTTTSCHHHH
T ss_pred CCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHH-HHc--CCCeEEEEEEcCcCCcccHHHH
Confidence 7789999999999999888888899999999999999864222 22222222 221 2246999999999974221 1
Q ss_pred HHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeeecCCChhHHHH
Q 029453 140 DELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFK 186 (193)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~ 186 (193)
++...++.... .. .. ......+++++||++|.|++++++
T Consensus 178 ~~i~~~~~~~~-~~-~g------~~~~~~~~i~vSA~~g~gi~~~~~ 216 (434)
T 1zun_B 178 ESIKADYLKFA-EG-IA------FKPTTMAFVPMSALKGDNVVNKSE 216 (434)
T ss_dssp HHHHHHHHHHH-HT-TT------CCCSEEEEEECCTTTCTTTSSCCT
T ss_pred HHHHHHHHHHH-HH-hC------CCccCceEEEEeccCCCCcccccc
Confidence 11222111100 00 00 001347899999999999998543
No 163
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.84 E-value=4.7e-21 Score=147.91 Aligned_cols=145 Identities=14% Similarity=0.005 Sum_probs=104.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCChh
Q 029453 22 KILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKE 101 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~ 101 (193)
+|+++|.+++|||||+++|. ....|.......+..++..+.+||||||++|.......+..+|++++|+| ++..
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~-----~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~~g~ 96 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG-----KKGTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-PQGL 96 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS-----EEEEESSSEEEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-TTCC
T ss_pred EEEEECCCCCCHHHHHHHHH-----hCCEEEEeeEEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-CCCC
Confidence 99999999999999999998 22234455555666778899999999999998877888899999999999 5432
Q ss_pred hHHHHHHHHHHHHhCCCCCCCcE-EEEee-CCCCCCCCCHH----HHHHhhCCCccccCCCcccCCCCCCccEEEEE--E
Q 029453 102 RFSESKRELDALLSDEALADVPF-LILGN-KIDIPYAASED----ELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFM--C 173 (193)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~pv-iiv~n-K~Dl~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 173 (193)
......++..+. . .+.|. ++++| |+|+ .....+ ++.+.+.... ...+++++ +
T Consensus 97 -~~qt~e~~~~~~-~---~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~--------------~~~~~ii~~~~ 156 (370)
T 2elf_A 97 -DAHTGECIIALD-L---LGFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTV--------------LQDWECISLNT 156 (370)
T ss_dssp -CHHHHHHHHHHH-H---TTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTST--------------TTTCEEEECCC
T ss_pred -cHHHHHHHHHHH-H---cCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcC--------------CCceEEEeccc
Confidence 223333333332 2 35677 88999 9999 422212 2222222111 13468999 9
Q ss_pred eeec---CCChhHHHHhhhhhc
Q 029453 174 SIVR---KMGYGEGFKWLSQYI 192 (193)
Q Consensus 174 Sa~~---~~gi~~~~~~i~~~l 192 (193)
||++ +.|+++++++|.+.+
T Consensus 157 SA~~~~~g~gi~~L~~~l~~~~ 178 (370)
T 2elf_A 157 NKSAKNPFEGVDELKARINEVA 178 (370)
T ss_dssp CTTSSSTTTTHHHHHHHHHHHH
T ss_pred ccccCcCCCCHHHHHHHHHhhc
Confidence 9999 999999999987653
No 164
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.84 E-value=3.6e-21 Score=156.21 Aligned_cols=164 Identities=20% Similarity=0.188 Sum_probs=105.0
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCccccCC---CCCcceeEEEe------------------CCeEEEEEEcCChhh
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQHQP---TQYPTSEELSI------------------GKIKFKAFDLGGHQM 76 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~---t~~~~~~~~~~------------------~~~~~~~~D~~g~~~ 76 (193)
.+.++|+++|++++|||||++++.+.......+ |.......... ....+.+||||||+.
T Consensus 3 ~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~ 82 (594)
T 1g7s_A 3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA 82 (594)
T ss_dssp ECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred CCCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHH
Confidence 367899999999999999999998765433222 11111222211 112589999999999
Q ss_pred hHHhHHhhhccCCEEEEEEeCCC---hhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCH--------------
Q 029453 77 ARRVWKDYYAKVDAVVYLIDAYD---KERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASE-------------- 139 (193)
Q Consensus 77 ~~~~~~~~~~~~d~ii~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~-------------- 139 (193)
|...+..++..+|++|+|+|+++ ++++..+. .+ .. .++|+++++||+|+.+....
T Consensus 83 F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~----~l-~~---~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~ 154 (594)
T 1g7s_A 83 FTTLRKRGGALADLAILIVDINEGFKPQTQEALN----IL-RM---YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQD 154 (594)
T ss_dssp CTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHH----HH-HH---TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSC
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHH----HH-HH---cCCeEEEEecccccccccccccCCchHHHHHHhH
Confidence 98887778888999999999998 44433222 22 22 47899999999999642210
Q ss_pred H-----------HHHHhhCCCccccCCCcccCCCCCCccEEEEEEeeecCCChhHHHHhhhhh
Q 029453 140 D-----------ELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQY 191 (193)
Q Consensus 140 ~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~ 191 (193)
+ ++...+....+..... ..+ .......+++++||++|.|+++++++|...
T Consensus 155 ~~v~~~~~e~i~ei~~~L~e~gl~~e~~-~~l-~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~ 215 (594)
T 1g7s_A 155 IQVQQKLDTKVYELVGKLHEEGFESERF-DRV-TDFASQVSIIPISAITGEGIPELLTMLMGL 215 (594)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEEEEG-GGC-SCTTTEEEEEECCTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCcchHHH-HHH-HhccCcceEEEEeccCCCCchhHHHHHHhh
Confidence 1 1111111111100000 000 011256799999999999999999999764
No 165
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.83 E-value=4.3e-20 Score=146.39 Aligned_cols=156 Identities=16% Similarity=0.061 Sum_probs=102.3
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcC--Cccc--------------------------------cCCCCCcceeEEEeC
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDE--RLVQ--------------------------------HQPTQYPTSEELSIG 62 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~--~~~~--------------------------------~~~t~~~~~~~~~~~ 62 (193)
.+..++|+++|.+++|||||+++|.+. .+.. ...|.......+...
T Consensus 4 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~ 83 (458)
T 1f60_A 4 EKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETP 83 (458)
T ss_dssp CCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECS
T ss_pred CCceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecC
Confidence 456789999999999999999999753 1110 122445555667778
Q ss_pred CeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCChh---hHH---HHHHHHHHHHhCCCCCCCc-EEEEeeCCCCCC
Q 029453 63 KIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKE---RFS---ESKRELDALLSDEALADVP-FLILGNKIDIPY 135 (193)
Q Consensus 63 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~---~~~---~~~~~~~~~~~~~~~~~~p-viiv~nK~Dl~~ 135 (193)
+..+.+||||||+++...+..++..+|++++|+|++++. +|+ .....+. +... .+.| +++++||+|+..
T Consensus 84 ~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~-~~~~---~~v~~iivviNK~Dl~~ 159 (458)
T 1f60_A 84 KYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHAL-LAFT---LGVRQLIVAVNKMDSVK 159 (458)
T ss_dssp SEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHH-HHHH---TTCCEEEEEEECGGGGT
T ss_pred CceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHH-HHHH---cCCCeEEEEEEcccccc
Confidence 899999999999999988888999999999999998753 110 1112222 2222 2555 999999999973
Q ss_pred CCC--HHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeeecCCChhHH
Q 029453 136 AAS--EDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEG 184 (193)
Q Consensus 136 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~ 184 (193)
... .++...++....-.... .....+++++||++|.|+.++
T Consensus 160 ~~~~~~~~i~~~~~~~l~~~g~--------~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 160 WDESRFQEIVKETSNFIKKVGY--------NPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTC--------CGGGCCEEECCTTTCBTTTBC
T ss_pred CCHHHHHHHHHHHHHHHHHcCC--------CccCceEEEeecccCcCcccc
Confidence 111 11222221110000000 002367999999999999754
No 166
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.83 E-value=6.2e-20 Score=133.98 Aligned_cols=120 Identities=10% Similarity=0.075 Sum_probs=81.0
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHHhcCCcccc-----CCCCCcceeEEEeCCeEEEEEEcCCh-----------hhhHH
Q 029453 16 LWQKEAKILFLGLDNSGKTTLLHMLKDERLVQH-----QPTQYPTSEELSIGKIKFKAFDLGGH-----------QMARR 79 (193)
Q Consensus 16 ~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~-----~~t~~~~~~~~~~~~~~~~~~D~~g~-----------~~~~~ 79 (193)
.....++|+++|++|||||||+|++.+...... ..|.........+.+..+.+|||||. ..+..
T Consensus 25 ~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~ 104 (239)
T 3lxx_A 25 PRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEIIR 104 (239)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHHHH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHHHH
Confidence 345779999999999999999999998876532 22445556677888899999999993 34455
Q ss_pred hHHhhhccCCEEEEEEeCCChhhHH-HHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCC
Q 029453 80 VWKDYYAKVDAVVYLIDAYDKERFS-ESKRELDALLSDEALADVPFLILGNKIDIPYAA 137 (193)
Q Consensus 80 ~~~~~~~~~d~ii~v~d~~~~~~~~-~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~ 137 (193)
.+..+...+|++++|+|+++..... ....++...+... ...|+++|+||+|+....
T Consensus 105 ~~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~--~~~~~iiv~nK~D~~~~~ 161 (239)
T 3lxx_A 105 CILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGER--ARSFMILIFTRKDDLGDT 161 (239)
T ss_dssp HHHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHH--HGGGEEEEEECGGGC---
T ss_pred HHHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhh--ccceEEEEEeCCccCCcc
Confidence 5555667889999999997643311 1222222222110 246999999999987443
No 167
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.83 E-value=4.6e-20 Score=139.95 Aligned_cols=141 Identities=16% Similarity=0.217 Sum_probs=98.9
Q ss_pred CCcceeEEEeCCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCC----------ChhhHHHHHHHHHHHHhCCCCCC
Q 029453 52 QYPTSEELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAY----------DKERFSESKRELDALLSDEALAD 121 (193)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~~~~~~~~~~~~~~~~~~~~~ 121 (193)
.+.....+..++..+.+||++|++.++..|..++++++++|+|+|++ +..++.+...++..+.+.....+
T Consensus 149 iGi~~~~~~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~ 228 (340)
T 4fid_A 149 TGIHEYDFVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKG 228 (340)
T ss_dssp CSCEEEEEESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTT
T ss_pred eeeEEEEEEeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCC
Confidence 34445566778899999999999999999999999999999999998 67889999999999987766678
Q ss_pred CcEEEEeeCCCCCCC-----------------CCHHHHHHhhCCCc------cccCCCcc----cCCCCCCccEEEEEEe
Q 029453 122 VPFLILGNKIDIPYA-----------------ASEDELRYHMGLTN------FTTGKGNV----NLDNTNVRPLEVFMCS 174 (193)
Q Consensus 122 ~pviiv~nK~Dl~~~-----------------~~~~~~~~~~~~~~------~~~~~~~~----~~~~~~~~~~~~~~~S 174 (193)
.|+++++||+|+... ...++..+.+...+ ........ ++.....+.+.++.+|
T Consensus 229 ~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~Ts 308 (340)
T 4fid_A 229 AVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTN 308 (340)
T ss_dssp SEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEEC
T ss_pred CeEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEE
Confidence 999999999998520 11222111111111 00000000 0000001357889999
Q ss_pred eecCCChhHHHHhhhhhc
Q 029453 175 IVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 175 a~~~~gi~~~~~~i~~~l 192 (193)
|++..|++.+|+.+.+.+
T Consensus 309 A~dt~nv~~vF~~v~~~I 326 (340)
T 4fid_A 309 ATDGSNIKRVFMLAVDVI 326 (340)
T ss_dssp TTCHHHHHHHHHHHHHHH
T ss_pred eeCcHHHHHHHHHHHHHH
Confidence 999999999999887643
No 168
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.82 E-value=1.2e-20 Score=140.40 Aligned_cols=157 Identities=16% Similarity=0.170 Sum_probs=84.4
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCcc-cc--------CCCCCcceeEEEe--CC--eEEEEEEcCChh-------hh
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLV-QH--------QPTQYPTSEELSI--GK--IKFKAFDLGGHQ-------MA 77 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~-~~--------~~t~~~~~~~~~~--~~--~~~~~~D~~g~~-------~~ 77 (193)
...++|+++|.+|+|||||+|++++.... .. .+|.+........ ++ ..+.+|||||+. .+
T Consensus 6 g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~ 85 (274)
T 3t5d_A 6 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW 85 (274)
T ss_dssp -CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTT
T ss_pred ccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhH
Confidence 35789999999999999999998766543 22 3344444444333 33 489999999972 22
Q ss_pred HHhH-------Hhhhc-------------cCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCC
Q 029453 78 RRVW-------KDYYA-------------KVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAA 137 (193)
Q Consensus 78 ~~~~-------~~~~~-------------~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~ 137 (193)
.... ..++. .+|+++++++.+..........++..+ .. ++|+++|+||+|+....
T Consensus 86 ~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l-~~----~~pvi~V~nK~D~~~~~ 160 (274)
T 3t5d_A 86 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRL-HE----KVNIIPLIAKADTLTPE 160 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHH-TT----TSCEEEEESSGGGSCHH
T ss_pred HHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHH-hc----cCCEEEEEeccCCCCHH
Confidence 2222 33333 378999999876532112223333333 22 78999999999986433
Q ss_pred CHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 138 SEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
........+.... . ...++++++||+++.|+++++++|.+.+
T Consensus 161 e~~~~~~~i~~~l-~------------~~~i~v~~~sa~~~~~~~~l~~~l~~~~ 202 (274)
T 3t5d_A 161 ECQQFKKQIMKEI-Q------------EHKIKIYEFPETDDEEENKLVKKIKDRL 202 (274)
T ss_dssp HHHHHHHHHHHHH-H------------HTTCCCCCC-----------CHHHHHTC
T ss_pred HHHHHHHHHHHHH-H------------HcCCeEEcCCCCCChhHHHHHHHHhcCC
Confidence 3222222211111 0 0124578889999999999999987653
No 169
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.82 E-value=4.3e-20 Score=146.73 Aligned_cols=154 Identities=18% Similarity=0.199 Sum_probs=89.6
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCC--cc--------------------------------ccCCCCCcceeEEEeC
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDER--LV--------------------------------QHQPTQYPTSEELSIG 62 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~--~~--------------------------------~~~~t~~~~~~~~~~~ 62 (193)
.+..++|+++|++++|||||+++|.... +. ....|.......+..+
T Consensus 40 ~k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~ 119 (467)
T 1r5b_A 40 GKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETE 119 (467)
T ss_dssp CCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECS
T ss_pred CCCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecC
Confidence 3567899999999999999999986421 10 0011333334456677
Q ss_pred CeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCChh---hHH---HHHHHHHHHHhCCCCCCCc-EEEEeeCCCCCC
Q 029453 63 KIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKE---RFS---ESKRELDALLSDEALADVP-FLILGNKIDIPY 135 (193)
Q Consensus 63 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~---~~~---~~~~~~~~~~~~~~~~~~p-viiv~nK~Dl~~ 135 (193)
+..+.+||||||++|...+..++..+|++|+|+|++++. +|. .....+. +... .++| +++++||+|+..
T Consensus 120 ~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~-~~~~---~~vp~iivviNK~Dl~~ 195 (467)
T 1r5b_A 120 HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAV-LART---QGINHLVVVINKMDEPS 195 (467)
T ss_dssp SEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHH-HHHH---TTCSSEEEEEECTTSTT
T ss_pred CeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHH-HHHH---cCCCEEEEEEECccCCC
Confidence 889999999999999888888889999999999999862 111 1111111 1112 3676 999999999964
Q ss_pred CC-CHH-------HHHHhhCCC-ccccCCCcccCCCCCCccEEEEEEeeecCCChhHHH
Q 029453 136 AA-SED-------ELRYHMGLT-NFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGF 185 (193)
Q Consensus 136 ~~-~~~-------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~ 185 (193)
.. +.+ ++...+... -+. ....++++++||++|.|+.+++
T Consensus 196 ~~~~~~~~~~i~~e~~~~l~~~~g~~-----------~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 196 VQWSEERYKECVDKLSMFLRRVAGYN-----------SKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHHHCCC-----------HHHHEEEEECBTTTTBTTSSCC
T ss_pred ccccHHHHHHHHHHHHHHHHHhcCCC-----------ccCCceEEeccccccccccccc
Confidence 22 221 122211110 000 0024789999999999998765
No 170
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.81 E-value=8.8e-21 Score=145.18 Aligned_cols=128 Identities=20% Similarity=0.301 Sum_probs=88.4
Q ss_pred CeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCC----------ChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCC
Q 029453 63 KIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAY----------DKERFSESKRELDALLSDEALADVPFLILGNKID 132 (193)
Q Consensus 63 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D 132 (193)
...+.+|||+|++.++..+..++++++++|+|+|++ +..++.+...++..+.......+.|+++++||+|
T Consensus 182 ~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~D 261 (354)
T 2xtz_A 182 GEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFD 261 (354)
T ss_dssp --EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHH
T ss_pred ceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECcc
Confidence 468999999999999999999999999999999998 7788999999999987654446899999999999
Q ss_pred CCCC----CC-------------------HHHHHHhhCCCccccCCCcccC-CCCCCccEEEEEEeeecCCChhHHHHhh
Q 029453 133 IPYA----AS-------------------EDELRYHMGLTNFTTGKGNVNL-DNTNVRPLEVFMCSIVRKMGYGEGFKWL 188 (193)
Q Consensus 133 l~~~----~~-------------------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~Sa~~~~gi~~~~~~i 188 (193)
+... .. .++........+ .... ..+. .......+.+++|||+++.||+++|+++
T Consensus 262 L~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f-~~l~-~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v 339 (354)
T 2xtz_A 262 IFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKF-EELY-YQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLV 339 (354)
T ss_dssp HHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHH-HHHH-HHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHH
T ss_pred hhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHH-HHhh-hccccccccCcceEEEEEEeecchhHHHHHHHH
Confidence 8411 10 111111100000 0000 0000 0000123567899999999999999998
Q ss_pred hhhc
Q 029453 189 SQYI 192 (193)
Q Consensus 189 ~~~l 192 (193)
.+.+
T Consensus 340 ~~~I 343 (354)
T 2xtz_A 340 DETL 343 (354)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7653
No 171
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.81 E-value=1.5e-21 Score=158.81 Aligned_cols=160 Identities=17% Similarity=0.103 Sum_probs=86.6
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccc----------------------------------cCCCCCcceeEEEeC
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQ----------------------------------HQPTQYPTSEELSIG 62 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~----------------------------------~~~t~~~~~~~~~~~ 62 (193)
.+..++|+++|++++|||||+++|.+..... ...|.......+..+
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~ 253 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD 253 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC
Confidence 4567899999999999999999995321000 011333334445556
Q ss_pred CeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCChh---hH--HHHHHHHHHHHhCCCCCCCc-EEEEeeCCCCCCC
Q 029453 63 KIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKE---RF--SESKRELDALLSDEALADVP-FLILGNKIDIPYA 136 (193)
Q Consensus 63 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~---~~--~~~~~~~~~~~~~~~~~~~p-viiv~nK~Dl~~~ 136 (193)
+..+.+||||||+.|...+..++..+|++|+|+|++++. .+ .........++.. .++| +++|+||+|+...
T Consensus 254 ~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~---lgip~iIvviNKiDl~~~ 330 (592)
T 3mca_A 254 KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA---LGISEIVVSVNKLDLMSW 330 (592)
T ss_dssp -----CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH---SSCCCEEEEEECGGGGTT
T ss_pred CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH---cCCCeEEEEEeccccccc
Confidence 788999999999998877777788999999999998642 11 1111112222222 2555 9999999999642
Q ss_pred CC--HH----HHHHhh-CCCccccCCCcccCCCCCCccEEEEEEeeecCCChh--------------HHHHhhhhh
Q 029453 137 AS--ED----ELRYHM-GLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYG--------------EGFKWLSQY 191 (193)
Q Consensus 137 ~~--~~----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~--------------~~~~~i~~~ 191 (193)
.. .+ ++...+ ...- .....++++++||++|.|+. .+++.|...
T Consensus 331 ~~~~~~~i~~el~~~l~~~~g------------~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~ 394 (592)
T 3mca_A 331 SEDRFQEIKNIVSDFLIKMVG------------FKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQL 394 (592)
T ss_dssp CHHHHHHHHHHHHHHHTTTSC------------CCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTS
T ss_pred cHHHHHHHHHHHHHHHHHhhC------------CCccceEEEEEecccCcccccccccccccccchHHHHHHHHhh
Confidence 11 11 222222 1111 01135789999999999998 677777553
No 172
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.81 E-value=2.7e-19 Score=135.59 Aligned_cols=158 Identities=17% Similarity=0.174 Sum_probs=97.0
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCccccC---CCCCcc---ee----------------------------------
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQHQ---PTQYPT---SE---------------------------------- 57 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~---~t~~~~---~~---------------------------------- 57 (193)
...++|+|+|.+|||||||+|++.+..+.... .|..+. ..
T Consensus 22 ~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (315)
T 1jwy_B 22 LDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREE 101 (315)
T ss_dssp TCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHH
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHH
Confidence 46789999999999999999999988752111 011110 00
Q ss_pred --------------------E---EEeCCeEEEEEEcCChhh-------------hHHhHHhhhccCCEEEEEEeCCChh
Q 029453 58 --------------------E---LSIGKIKFKAFDLGGHQM-------------ARRVWKDYYAKVDAVVYLIDAYDKE 101 (193)
Q Consensus 58 --------------------~---~~~~~~~~~~~D~~g~~~-------------~~~~~~~~~~~~d~ii~v~d~~~~~ 101 (193)
. .......+.+|||||... +......++..+|++++|+|.++..
T Consensus 102 i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~ 181 (315)
T 1jwy_B 102 IIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTD 181 (315)
T ss_dssp HHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSC
T ss_pred HHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcc
Confidence 0 111335799999999643 4555667788999999999975432
Q ss_pred hHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC--HHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeeec--
Q 029453 102 RFSESKRELDALLSDEALADVPFLILGNKIDIPYAAS--EDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVR-- 177 (193)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~-- 177 (193)
........+...+.. .+.|+++|+||+|+..... .+.+...+. . ......++..+|+.+
T Consensus 182 ~~~~~~~~i~~~~~~---~~~~~i~v~NK~Dl~~~~~~~~~~~~~~~~--~------------~~~~~~~v~~~sa~~~~ 244 (315)
T 1jwy_B 182 LANSDALQLAKEVDP---EGKRTIGVITKLDLMDKGTDAMEVLTGRVI--P------------LTLGFIGVINRSQEDII 244 (315)
T ss_dssp STTCSHHHHHHHHCS---SCSSEEEEEECTTSSCSSCCCHHHHTTSSS--C------------CTTCEEECCCCCHHHHS
T ss_pred hhhhHHHHHHHHhCC---CCCcEEEEEcCcccCCcchHHHHHHhCCCc--c------------CCCCeEEEecCChhhhc
Confidence 111111122233322 4789999999999974332 222221100 0 001335667777777
Q ss_pred -CCChhHHHHhhhhhc
Q 029453 178 -KMGYGEGFKWLSQYI 192 (193)
Q Consensus 178 -~~gi~~~~~~i~~~l 192 (193)
+.|+.++++.+.+.+
T Consensus 245 ~~~gv~~l~~~~~~~~ 260 (315)
T 1jwy_B 245 AKKSIRESLKSEILYF 260 (315)
T ss_dssp SSCCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHH
Confidence 899999999876543
No 173
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.81 E-value=9.9e-19 Score=144.62 Aligned_cols=115 Identities=16% Similarity=0.059 Sum_probs=86.0
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcC--Ccc-------------------ccCCCCCcceeEEEeCCeEEEEEEcCChh
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDE--RLV-------------------QHQPTQYPTSEELSIGKIKFKAFDLGGHQ 75 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~--~~~-------------------~~~~t~~~~~~~~~~~~~~~~~~D~~g~~ 75 (193)
.++..+|+++|++|+|||||++++... ... ....|.......+.+.+..+.+|||||+.
T Consensus 9 ~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 88 (691)
T 1dar_A 9 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHV 88 (691)
T ss_dssp GGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSST
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCcc
Confidence 356789999999999999999999731 110 11224445556677788999999999999
Q ss_pred hhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC
Q 029453 76 MARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYA 136 (193)
Q Consensus 76 ~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~ 136 (193)
.+......++..+|++++|+|+++....+....|. .+.. .++|+++++||+|+...
T Consensus 89 df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~-~~~~----~~~p~ivviNKiD~~~~ 144 (691)
T 1dar_A 89 DFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWR-QAEK----YKVPRIAFANKMDKTGA 144 (691)
T ss_dssp TCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHH-HHHH----TTCCEEEEEECTTSTTC
T ss_pred chHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHH-HHHH----cCCCEEEEEECCCcccC
Confidence 99888888999999999999999876555544433 3322 37999999999999754
No 174
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.80 E-value=1.4e-19 Score=129.27 Aligned_cols=155 Identities=19% Similarity=0.243 Sum_probs=95.6
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCcc-ccCCCCCcce--eEEEeCCeEEEEEEcCChh----------hhHHhHHh
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLV-QHQPTQYPTS--EELSIGKIKFKAFDLGGHQ----------MARRVWKD 83 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~--~~~~~~~~~~~~~D~~g~~----------~~~~~~~~ 83 (193)
..+..+|+++|++|||||||++++.+..+. .+.++.+... ..+.+++ .+.+|||||+. .+......
T Consensus 23 ~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 101 (210)
T 1pui_A 23 SDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD-GKRLVDLPGYGYAEVPEEMKRKWQRALGE 101 (210)
T ss_dssp CSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET-TEEEEECCCCC------CCHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC-CEEEEECcCCcccccCHHHHHHHHHHHHH
Confidence 346789999999999999999999987632 2233333222 2333333 57899999973 23333333
Q ss_pred hh---ccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCH----HHHHHhhCCCccccCCC
Q 029453 84 YY---AKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASE----DELRYHMGLTNFTTGKG 156 (193)
Q Consensus 84 ~~---~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~----~~~~~~~~~~~~~~~~~ 156 (193)
++ ..++++++++|++++.+... ..+..++.. .+.|+++++||+|+...... ..++..+....
T Consensus 102 ~~~~~~~~~~~~~v~d~~~~~~~~~--~~~~~~~~~---~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~------ 170 (210)
T 1pui_A 102 YLEKRQSLQGLVVLMDIRHPLKDLD--QQMIEWAVD---SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFN------ 170 (210)
T ss_dssp HHHHCTTEEEEEEEEETTSCCCHHH--HHHHHHHHH---TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGC------
T ss_pred HHHhhhcccEEEEEEECCCCCchhH--HHHHHHHHH---cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcC------
Confidence 44 46889999999987644322 112222222 47899999999998643221 12222221111
Q ss_pred cccCCCCCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 157 NVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 157 ~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
.....+++||+++.|+++++++|.+.+
T Consensus 171 ---------~~~~~~~~Sal~~~~~~~l~~~l~~~~ 197 (210)
T 1pui_A 171 ---------GDVQVETFSSLKKQGVDKLRQKLDTWF 197 (210)
T ss_dssp ---------SCEEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ---------CCCceEEEeecCCCCHHHHHHHHHHHH
Confidence 236789999999999999999997754
No 175
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.80 E-value=4e-19 Score=151.06 Aligned_cols=159 Identities=18% Similarity=0.147 Sum_probs=105.2
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCC-------cc--------ccCC----CCCcceeEEEeCCeEEEEEEcCChhhh
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDER-------LV--------QHQP----TQYPTSEELSIGKIKFKAFDLGGHQMA 77 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~-------~~--------~~~~----t~~~~~~~~~~~~~~~~~~D~~g~~~~ 77 (193)
.+..++|+++|++++|||||+++|.+.. +. ..+. |.......+...+..+.+||||||++|
T Consensus 293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF 372 (1289)
T 3avx_A 293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADY 372 (1289)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHH
T ss_pred cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHH
Confidence 4567899999999999999999997631 00 0111 222223345556789999999999999
Q ss_pred HHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCc-EEEEeeCCCCCCCCC-H----HHHHHhhCCCcc
Q 029453 78 RRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVP-FLILGNKIDIPYAAS-E----DELRYHMGLTNF 151 (193)
Q Consensus 78 ~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-viiv~nK~Dl~~~~~-~----~~~~~~~~~~~~ 151 (193)
...+..++..+|++|+|+|++++...+ ...++..+. . .++| +++++||+|+..... . +++...+....+
T Consensus 373 ~~~mi~gas~AD~aILVVDAtdGv~~Q-TrEhL~ll~-~---lgIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~ 447 (1289)
T 3avx_A 373 VKNMITGAAQMDGAILVVAATDGPMPQ-TREHILLGR-Q---VGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDF 447 (1289)
T ss_dssp HHHHHHTSCCCSEEEEEEETTTCSCTT-HHHHHHHHH-H---HTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhhCCEEEEEEcCCccCcHH-HHHHHHHHH-H---cCCCeEEEEEeecccccchhhHHHHHHHHHHHHHhccc
Confidence 888888899999999999998853222 222222222 2 3677 789999999974211 1 112221111100
Q ss_pred ccCCCcccCCCCCCccEEEEEEeeecC--------CChhHHHHhhhhhc
Q 029453 152 TTGKGNVNLDNTNVRPLEVFMCSIVRK--------MGYGEGFKWLSQYI 192 (193)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~--------~gi~~~~~~i~~~l 192 (193)
....++++++||++| .|+++++++|.+.+
T Consensus 448 ------------~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~I 484 (1289)
T 3avx_A 448 ------------PGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYI 484 (1289)
T ss_dssp ------------CTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTS
T ss_pred ------------cccceeEEEEEeccCCCCCccccccchhhHhHHhhhc
Confidence 002468999999999 57999999987643
No 176
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.80 E-value=2.7e-19 Score=143.78 Aligned_cols=151 Identities=17% Similarity=0.120 Sum_probs=102.3
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCC--cc----------------c---c----CCCCCcceeEEEeCCeEEEEEEcC
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDER--LV----------------Q---H----QPTQYPTSEELSIGKIKFKAFDLG 72 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~--~~----------------~---~----~~t~~~~~~~~~~~~~~~~~~D~~ 72 (193)
.+..+|+++|++|+|||||++++.... .. . . ..|.......+.+.+..+.+||||
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTP 90 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTP 90 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCC
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECC
Confidence 457899999999999999999998531 10 0 0 012233445677888999999999
Q ss_pred ChhhhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC---HHHHHHhhCCC
Q 029453 73 GHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAAS---EDELRYHMGLT 149 (193)
Q Consensus 73 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~---~~~~~~~~~~~ 149 (193)
|+..+......++..+|++|+|+|++++.. .....+...... .++|+++++||+|+..... .+++...++..
T Consensus 91 G~~df~~~~~~~l~~aD~~IlVvDa~~g~~--~~t~~~~~~~~~---~~ipiivviNK~Dl~~~~~~~~~~~i~~~l~~~ 165 (529)
T 2h5e_A 91 GHEDFSEDTYRTLTAVDCCLMVIDAAKGVE--DRTRKLMEVTRL---RDTPILTFMNKLDRDIRDPMELLDEVENELKIG 165 (529)
T ss_dssp CSTTCCHHHHHGGGGCSEEEEEEETTTCSC--HHHHHHHHHHTT---TTCCEEEEEECTTSCCSCHHHHHHHHHHHHCCE
T ss_pred CChhHHHHHHHHHHHCCEEEEEEeCCccch--HHHHHHHHHHHH---cCCCEEEEEcCcCCccccHHHHHHHHHHHhCCC
Confidence 999988878888999999999999988632 222222222222 4789999999999975433 33455555544
Q ss_pred ccccCCCcccCCCCCCccEEEEEEeeecCCChhHHHHhh
Q 029453 150 NFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWL 188 (193)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i 188 (193)
.. ...+-.+|++++.|+.++++..
T Consensus 166 ~~---------------~~~~pi~sa~~~~Gv~dl~~~~ 189 (529)
T 2h5e_A 166 CA---------------PITWPIGCGKLFKGVYHLYKDE 189 (529)
T ss_dssp EE---------------ESEEEESCGGGCCEEEETTTTE
T ss_pred cc---------------ceecceecccCcceeeehhhhh
Confidence 31 1122336777777777776543
No 177
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.80 E-value=5.3e-19 Score=130.74 Aligned_cols=126 Identities=17% Similarity=0.159 Sum_probs=84.4
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHHhcCCccccCC----CCCcceeEEEeCCeEEEEEEcCChhhhHHhHHhhh------
Q 029453 16 LWQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQP----TQYPTSEELSIGKIKFKAFDLGGHQMARRVWKDYY------ 85 (193)
Q Consensus 16 ~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~------ 85 (193)
...+.++|+++|.+|+|||||+|++.+.......+ |.......+.+++..+.+|||||+..+......++
T Consensus 32 ~~~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~ 111 (262)
T 3def_A 32 KDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGF 111 (262)
T ss_dssp TTCCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcccchHHHHHHHHHH
Confidence 34578999999999999999999999887532222 44555667788899999999999875533222222
Q ss_pred ---ccCCEEEEEEeCCChhhHHHH-HHHHHHHHhCCCC-CCCcEEEEeeCCCCC--CCCCHHHH
Q 029453 86 ---AKVDAVVYLIDAYDKERFSES-KRELDALLSDEAL-ADVPFLILGNKIDIP--YAASEDEL 142 (193)
Q Consensus 86 ---~~~d~ii~v~d~~~~~~~~~~-~~~~~~~~~~~~~-~~~pviiv~nK~Dl~--~~~~~~~~ 142 (193)
..+|++++|++++... +... ..++..+...... ...|+++|+||+|+. +....+++
T Consensus 112 l~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~e~~ 174 (262)
T 3def_A 112 LVNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELSYETF 174 (262)
T ss_dssp TTTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCSTTCCHHHH
T ss_pred HhcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCCCCccHHHH
Confidence 2689999999887643 3222 2333333222111 125999999999995 33444443
No 178
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.79 E-value=1.4e-18 Score=143.26 Aligned_cols=112 Identities=18% Similarity=0.142 Sum_probs=84.3
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCcc--------------c-------cCCCCCcceeEEEeCCeEEEEEEcCChhh
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLV--------------Q-------HQPTQYPTSEELSIGKIKFKAFDLGGHQM 76 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~--------------~-------~~~t~~~~~~~~~~~~~~~~~~D~~g~~~ 76 (193)
.+..+|+++|++|+|||||++++.+.... . ...+.......+...+..+.+|||||+..
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~ 86 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGD 86 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGG
T ss_pred CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccc
Confidence 46679999999999999999999743221 0 01133445556677889999999999999
Q ss_pred hHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC
Q 029453 77 ARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIP 134 (193)
Q Consensus 77 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~ 134 (193)
+......++..+|++++|+|+++.-..+ ...++..+.. .++|+++++||+|+.
T Consensus 87 f~~~~~~~l~~ad~~ilVvD~~~g~~~q-t~~~~~~~~~----~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 87 FVGEIRGALEAADAALVAVSAEAGVQVG-TERAWTVAER----LGLPRMVVVTKLDKG 139 (665)
T ss_dssp GHHHHHHHHHHCSEEEEEEETTTCSCHH-HHHHHHHHHH----TTCCEEEEEECGGGC
T ss_pred hHHHHHHHHhhcCcEEEEEcCCcccchh-HHHHHHHHHH----ccCCEEEEecCCchh
Confidence 9888888999999999999998753322 2233333332 378999999999997
No 179
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.79 E-value=5.9e-19 Score=136.68 Aligned_cols=77 Identities=22% Similarity=0.555 Sum_probs=69.4
Q ss_pred EEEeCCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCC----------hhhHHHHHHHHHHHHhCCCCCCCcEEEE
Q 029453 58 ELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYD----------KERFSESKRELDALLSDEALADVPFLIL 127 (193)
Q Consensus 58 ~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~pviiv 127 (193)
.+.+++..+.+|||+|++.++..|..++++++++|+|+|+++ ..++.....|+..+.+.....+.|++++
T Consensus 211 ~~~~~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~piiLv 290 (402)
T 1azs_C 211 KFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILF 290 (402)
T ss_dssp EEEETTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEEEE
T ss_pred EeecCCccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEEEE
Confidence 345667899999999999999999999999999999999998 8899999999999987655578999999
Q ss_pred eeCCCCC
Q 029453 128 GNKIDIP 134 (193)
Q Consensus 128 ~nK~Dl~ 134 (193)
+||+|+.
T Consensus 291 gNK~DL~ 297 (402)
T 1azs_C 291 LNKQDLL 297 (402)
T ss_dssp EECHHHH
T ss_pred EEChhhh
Confidence 9999984
No 180
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.78 E-value=1.4e-18 Score=143.82 Aligned_cols=164 Identities=20% Similarity=0.248 Sum_probs=102.8
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCcccc--CCCC-Ccce--------eEEEe------------------------
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQH--QPTQ-YPTS--------EELSI------------------------ 61 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~--~~t~-~~~~--------~~~~~------------------------ 61 (193)
....++|+|+|.+|+|||||+|++.+...... .|+. .++. .+..+
T Consensus 66 ~~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~ 145 (695)
T 2j69_A 66 QQGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAE 145 (695)
T ss_dssp HHCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHH
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHH
Confidence 44688999999999999999999998775432 2222 1100 01110
Q ss_pred ----------------------CC----eEEEEEEcCChhhh---HHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHH
Q 029453 62 ----------------------GK----IKFKAFDLGGHQMA---RRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDA 112 (193)
Q Consensus 62 ----------------------~~----~~~~~~D~~g~~~~---~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~ 112 (193)
+. ..+.+|||||.... ......+++.+|++++|+|++++.+......+. .
T Consensus 146 ~~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~-~ 224 (695)
T 2j69_A 146 AKKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLE-N 224 (695)
T ss_dssp HHHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHH-H
T ss_pred HHHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHH-H
Confidence 00 35899999997653 344556788999999999998876555443332 2
Q ss_pred HHhCCCCCCCcEEEEeeCCCCCCCC-----CHHH-------HHH----hhCCCccccCCCcccCCCCCCccEEEEEEeee
Q 029453 113 LLSDEALADVPFLILGNKIDIPYAA-----SEDE-------LRY----HMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIV 176 (193)
Q Consensus 113 ~~~~~~~~~~pviiv~nK~Dl~~~~-----~~~~-------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 176 (193)
.+.. .+.|+++|+||+|+.... ..++ +.. .+.... . .........+++++||+
T Consensus 225 ~l~~---~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~-~-------~~g~~~~~~~v~~vSAk 293 (695)
T 2j69_A 225 YIKG---RGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYC-T-------VEGQNIYDERVFELSSI 293 (695)
T ss_dssp HTTT---SCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGG-B-------SSSCBCGGGTEEECCHH
T ss_pred HHHh---hCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhh-c-------ccccccCCCcEEEEeCh
Confidence 3222 367899999999986321 1111 111 111000 0 00000122468999999
Q ss_pred --------------cCCChhHHHHhhhhhc
Q 029453 177 --------------RKMGYGEGFKWLSQYI 192 (193)
Q Consensus 177 --------------~~~gi~~~~~~i~~~l 192 (193)
++.|+++++++|.+.+
T Consensus 294 ~al~~~~~~~~~~~~~~Gi~~L~~~L~~~l 323 (695)
T 2j69_A 294 QALRRRLKNPQADLDGTGFPKFMDSLNTFL 323 (695)
T ss_dssp HHHHHHHHCTTCCCTTSSHHHHHHHHHHHH
T ss_pred HHHHhhccCchhhhhccCHHHHHHHHHHHH
Confidence 9999999999987643
No 181
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.77 E-value=1.5e-18 Score=135.33 Aligned_cols=154 Identities=19% Similarity=0.217 Sum_probs=104.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcc-ccC--CCCCcceeEEEeCC-eEEEEEEcCChhhh-------HHhHHhhhccCC
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLV-QHQ--PTQYPTSEELSIGK-IKFKAFDLGGHQMA-------RRVWKDYYAKVD 89 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~-~~~--~t~~~~~~~~~~~~-~~~~~~D~~g~~~~-------~~~~~~~~~~~d 89 (193)
..|+++|++|||||||++.+.+.... ... .|..++...+...+ ..+.+||+||.... ...+....+.++
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~ 237 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTR 237 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhHHHHHHHHHHH
Confidence 46899999999999999999887532 222 24456666677765 78999999996321 112223456799
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhCC-CCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccE
Q 029453 90 AVVYLIDAYDKERFSESKRELDALLSDE-ALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPL 168 (193)
Q Consensus 90 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (193)
.+++++|++ .+.+..+..+...+.... .....|.++++||+|+......+++...+.. ...
T Consensus 238 ~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~~~~~~l~~~l~~-----------------~g~ 299 (416)
T 1udx_A 238 VLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADALAR-----------------EGL 299 (416)
T ss_dssp EEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHHHHHHHHHHT-----------------TTS
T ss_pred hhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhHHHHHHHHHHHHh-----------------cCC
Confidence 999999997 444555555554443321 1236899999999998643212223222211 114
Q ss_pred EEEEEeeecCCChhHHHHhhhhhc
Q 029453 169 EVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 169 ~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
.++.+||+++.|+++++++|.+.+
T Consensus 300 ~vi~iSA~~g~gi~eL~~~i~~~l 323 (416)
T 1udx_A 300 AVLPVSALTGAGLPALKEALHALV 323 (416)
T ss_dssp CEEECCTTTCTTHHHHHHHHHHHH
T ss_pred eEEEEECCCccCHHHHHHHHHHHH
Confidence 689999999999999999998754
No 182
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.77 E-value=1.1e-17 Score=138.41 Aligned_cols=115 Identities=18% Similarity=0.109 Sum_probs=85.9
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhc--CCcc------------c-------cCCCCCcceeEEEeCCeEEEEEEcCChh
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKD--ERLV------------Q-------HQPTQYPTSEELSIGKIKFKAFDLGGHQ 75 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~--~~~~------------~-------~~~t~~~~~~~~~~~~~~~~~~D~~g~~ 75 (193)
.++..+|+++|.+|+|||||++++.. +... . ...|.......+.+.+..+.+|||||+.
T Consensus 7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 86 (693)
T 2xex_A 7 LEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHV 86 (693)
T ss_dssp STTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCS
T ss_pred cccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCc
Confidence 35678999999999999999999974 2211 0 1123444455677888999999999999
Q ss_pred hhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC
Q 029453 76 MARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYA 136 (193)
Q Consensus 76 ~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~ 136 (193)
.+......++..+|++++|+|++++.+.+....| ..+.. .+.|+++|+||+|+...
T Consensus 87 df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~-~~~~~----~~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 87 DFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVW-RQATT----YGVPRIVFVNKMDKLGA 142 (693)
T ss_dssp SCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHH-HHHHH----TTCCEEEEEECTTSTTC
T ss_pred chHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHH-HHHHH----cCCCEEEEEECCCcccc
Confidence 8888888889999999999999987555444333 33332 37899999999999754
No 183
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.77 E-value=1.6e-17 Score=137.63 Aligned_cols=115 Identities=16% Similarity=-0.001 Sum_probs=83.2
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCC--ccc-------------------cCCCCCcceeEEEeCC-------eEEEE
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDER--LVQ-------------------HQPTQYPTSEELSIGK-------IKFKA 68 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~--~~~-------------------~~~t~~~~~~~~~~~~-------~~~~~ 68 (193)
.++..+|+++|+.|+|||||++++.... +.. ...|.......+.+.+ ..+.+
T Consensus 7 ~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~l 86 (704)
T 2rdo_7 7 IARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINI 86 (704)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEE
Confidence 4567899999999999999999996421 110 0012222333455555 88999
Q ss_pred EEcCChhhhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC
Q 029453 69 FDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYA 136 (193)
Q Consensus 69 ~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~ 136 (193)
||||||..|......++..+|++|+|+|+++....+... .+.... . .++|+++++||+|+...
T Consensus 87 iDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~-~~~~~~-~---~~ip~ilviNKiD~~~~ 149 (704)
T 2rdo_7 87 IDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSET-VWRQAN-K---YKVPRIAFVNKMDRMGA 149 (704)
T ss_pred EeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHH-HHHHHH-H---cCCCEEEEEeCCCcccc
Confidence 999999999888888999999999999999864433332 233332 2 47899999999998743
No 184
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.75 E-value=1.8e-17 Score=127.44 Aligned_cols=155 Identities=13% Similarity=0.089 Sum_probs=94.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCccccC---CCCCcce---------------------------------------
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERLVQHQ---PTQYPTS--------------------------------------- 56 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~---~t~~~~~--------------------------------------- 56 (193)
..++|+++|.+|||||||+|+|.+..+.+.. .|..+..
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~ 109 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 109 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhc
Confidence 5679999999999999999999988763111 1111110
Q ss_pred ------------eEEEe-CCeEEEEEEcCChh-------------hhHHhHHhhhccCC-EEEEEEeCCChhhHHHHHHH
Q 029453 57 ------------EELSI-GKIKFKAFDLGGHQ-------------MARRVWKDYYAKVD-AVVYLIDAYDKERFSESKRE 109 (193)
Q Consensus 57 ------------~~~~~-~~~~~~~~D~~g~~-------------~~~~~~~~~~~~~d-~ii~v~d~~~~~~~~~~~~~ 109 (193)
..+.. ....+.+|||||.. .+..+...++..++ ++++|+|++....-.....+
T Consensus 110 g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i 189 (353)
T 2x2e_A 110 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKV 189 (353)
T ss_dssp TTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHH
T ss_pred ccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHH
Confidence 01111 13679999999952 34556666776655 55556666543111122223
Q ss_pred HHHHHhCCCCCCCcEEEEeeCCCCCCCCC-HHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeeecCCChhHHHHhh
Q 029453 110 LDALLSDEALADVPFLILGNKIDIPYAAS-EDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWL 188 (193)
Q Consensus 110 ~~~~~~~~~~~~~pviiv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i 188 (193)
+..+ . ..+.|+++|+||+|+..... ..++.. ...+ ........++++||+++.|++++++++
T Consensus 190 ~~~~-~---~~~~~~i~V~NK~Dl~~~~~~~~~~~~---~~~~----------~l~~~~~~v~~~SA~~~~~i~~l~~~l 252 (353)
T 2x2e_A 190 AKEV-D---PQGQRTIGVITKLDLMDEGTDARDVLE---NKLL----------PLRRGYIGVVNRSQKDIDGKKDITAAL 252 (353)
T ss_dssp HHHH-C---TTCTTEEEEEECGGGSCTTCCCHHHHT---TCSS----------CCTTCEEECCCCCHHHHHTTCCHHHHH
T ss_pred HHHh-C---cCCCceEEEeccccccCcchhHHHHHh---CCcc----------cccCCceEEEeCCcccccccccHHHHH
Confidence 3333 2 24789999999999974322 112211 1110 000133578999999999999999988
Q ss_pred hh
Q 029453 189 SQ 190 (193)
Q Consensus 189 ~~ 190 (193)
.+
T Consensus 253 ~~ 254 (353)
T 2x2e_A 253 AA 254 (353)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 185
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.74 E-value=5.8e-19 Score=137.29 Aligned_cols=80 Identities=23% Similarity=0.203 Sum_probs=47.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcc-ccCC--CCCcceeEEE---------------------eC---CeEEEEEEcCC
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLV-QHQP--TQYPTSEELS---------------------IG---KIKFKAFDLGG 73 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~-~~~~--t~~~~~~~~~---------------------~~---~~~~~~~D~~g 73 (193)
++|+++|.+|||||||+|++.+.... ...| |..++..... +. ...+.+|||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 58999999999999999999987732 2222 4444444321 12 25799999999
Q ss_pred hhhh----HHhHH---hhhccCCEEEEEEeCCCh
Q 029453 74 HQMA----RRVWK---DYYAKVDAVVYLIDAYDK 100 (193)
Q Consensus 74 ~~~~----~~~~~---~~~~~~d~ii~v~d~~~~ 100 (193)
+... ..... .+++.+|++++|+|+++.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 8542 22222 345789999999999874
No 186
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.74 E-value=4.2e-17 Score=121.04 Aligned_cols=118 Identities=16% Similarity=0.156 Sum_probs=79.3
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccccCC----CCCcceeEEEeCCeEEEEEEcCChhhhH-------HhHHhh-
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQP----TQYPTSEELSIGKIKFKAFDLGGHQMAR-------RVWKDY- 84 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~D~~g~~~~~-------~~~~~~- 84 (193)
..+.++|+++|.+|+|||||+|++++.......+ |.......+...+..+.+|||||+..+. .....+
T Consensus 36 ~~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~ 115 (270)
T 1h65_A 36 DVNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFL 115 (270)
T ss_dssp TCCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHh
Confidence 3468999999999999999999999887542222 3334445667788899999999986542 112222
Q ss_pred -hccCCEEEEEEeCCChhhHHHH-HHHHHHHHhCCCC-CCCcEEEEeeCCCCCC
Q 029453 85 -YAKVDAVVYLIDAYDKERFSES-KRELDALLSDEAL-ADVPFLILGNKIDIPY 135 (193)
Q Consensus 85 -~~~~d~ii~v~d~~~~~~~~~~-~~~~~~~~~~~~~-~~~pviiv~nK~Dl~~ 135 (193)
...+|++++|+|++.. ++... ..++..+...... ...|+++|+||+|+.+
T Consensus 116 ~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~ 168 (270)
T 1h65_A 116 LDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSP 168 (270)
T ss_dssp TTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCC
T ss_pred hcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCC
Confidence 2368999999988653 23322 2344444322110 1269999999999864
No 187
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.73 E-value=3.4e-19 Score=137.29 Aligned_cols=156 Identities=14% Similarity=0.165 Sum_probs=74.1
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCcc-ccC---------CCCCcceeEE--EeCC--eEEEEEEcCCh-------h
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLV-QHQ---------PTQYPTSEEL--SIGK--IKFKAFDLGGH-------Q 75 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~-~~~---------~t~~~~~~~~--~~~~--~~~~~~D~~g~-------~ 75 (193)
....++|+++|++|+|||||++++++.... ... +|........ ...+ ..+.+|||||+ +
T Consensus 34 ~~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e 113 (361)
T 2qag_A 34 KGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRD 113 (361)
T ss_dssp HCCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC------------
T ss_pred CCCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHH
Confidence 345789999999999999999998765432 111 2222221111 2223 37899999998 4
Q ss_pred hhHHhHH-------hhhcc-------------CCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC
Q 029453 76 MARRVWK-------DYYAK-------------VDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY 135 (193)
Q Consensus 76 ~~~~~~~-------~~~~~-------------~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~ 135 (193)
.+..... .++.. +|+++|+++.+. .++......+...+. .++|+++|+||+|+..
T Consensus 114 ~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~-~~l~~~d~~~~~~l~----~~~piIlV~NK~Dl~~ 188 (361)
T 2qag_A 114 CFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDVAFMKAIH----NKVNIVPVIAKADTLT 188 (361)
T ss_dssp --CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSS-SSCCHHHHHHHHHTC----S-SCEEEEEECCSSSC
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCC-CCcchhHHHHHHHhc----cCCCEEEEEECCCCCC
Confidence 4444433 44432 346777776522 223444332322222 5789999999999964
Q ss_pred CCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeeecCCChhHHHHhhhhh
Q 029453 136 AASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQY 191 (193)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~ 191 (193)
......+........ . ...++++++||+++.| ++.|.++.+.
T Consensus 189 ~~ev~~~k~~i~~~~----~---------~~~i~~~~~Sa~~~~~-~e~~~~l~~~ 230 (361)
T 2qag_A 189 LKERERLKKRILDEI----E---------EHNIKIYHLPDAESDE-DEDFKEQTRL 230 (361)
T ss_dssp HHHHHHHHHHHHHHT----T---------CC-CCSCCCC----------CHHHHHH
T ss_pred HHHHHHHHHHHHHHH----H---------HCCCCEEeCCCcCCCc-chhHHHHHHH
Confidence 322211111111000 0 0235789999999998 7777666543
No 188
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.73 E-value=1.4e-17 Score=128.41 Aligned_cols=149 Identities=13% Similarity=0.136 Sum_probs=93.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCccccCC---CCCcce---------------------------------------
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERLVQHQP---TQYPTS--------------------------------------- 56 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~---t~~~~~--------------------------------------- 56 (193)
.-++|+++|++|||||||+|++.+..+..... |..+..
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD 112 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence 44599999999999999999999977532111 111100
Q ss_pred -------------eEE--E-eCCeEEEEEEcCChhhh-------------HHhHHhhhccCCEEEEEEeCCChhhHH-HH
Q 029453 57 -------------EEL--S-IGKIKFKAFDLGGHQMA-------------RRVWKDYYAKVDAVVYLIDAYDKERFS-ES 106 (193)
Q Consensus 57 -------------~~~--~-~~~~~~~~~D~~g~~~~-------------~~~~~~~~~~~d~ii~v~d~~~~~~~~-~~ 106 (193)
..+ . .....+.+|||||...+ ......++.++|++++|+|.++.+... ..
T Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~ 192 (360)
T 3t34_A 113 RETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDA 192 (360)
T ss_dssp HTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHH
T ss_pred HhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHH
Confidence 011 1 12346899999997654 556677889999999999876543222 22
Q ss_pred HHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC-HHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeeecCCChhHHH
Q 029453 107 KRELDALLSDEALADVPFLILGNKIDIPYAAS-EDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGF 185 (193)
Q Consensus 107 ~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~ 185 (193)
..... .....+.|+++|+||+|+..... ..+....+... ....++.+|++++.++++.+
T Consensus 193 ~~l~~----~~~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~----------------~~~~~~~v~~~s~~~i~~~~ 252 (360)
T 3t34_A 193 IKISR----EVDPSGDRTFGVLTKIDLMDKGTDAVEILEGRSFK----------------LKYPWVGVVNRSQADINKNV 252 (360)
T ss_dssp HHHHH----HSCTTCTTEEEEEECGGGCCTTCCSHHHHTTSSSC----------------CSSCCEEECCCCHHHHHTTC
T ss_pred HHHHH----HhcccCCCEEEEEeCCccCCCcccHHHHHcCcccc----------------ccCCeEEEEECChHHhccCC
Confidence 22222 22235789999999999974322 11221111111 22467889999888887765
Q ss_pred Hh
Q 029453 186 KW 187 (193)
Q Consensus 186 ~~ 187 (193)
.+
T Consensus 253 ~~ 254 (360)
T 3t34_A 253 DM 254 (360)
T ss_dssp CH
T ss_pred CH
Confidence 54
No 189
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.72 E-value=1.9e-16 Score=127.81 Aligned_cols=122 Identities=17% Similarity=0.149 Sum_probs=87.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC------------------cccc---C----CCCCcceeEEEeCCeEEEEEEcCChh
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDER------------------LVQH---Q----PTQYPTSEELSIGKIKFKAFDLGGHQ 75 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~------------------~~~~---~----~t~~~~~~~~~~~~~~~~~~D~~g~~ 75 (193)
=+|+|+|+.++|||||..+++... .... + -|.......+.+++..+.++|||||.
T Consensus 32 RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGHv 111 (548)
T 3vqt_A 32 RTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPGHQ 111 (548)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCCGG
T ss_pred ceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCCcH
Confidence 379999999999999999985110 1111 1 14455667788999999999999999
Q ss_pred hhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC---HHHHHHhhC
Q 029453 76 MARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAAS---EDELRYHMG 147 (193)
Q Consensus 76 ~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~---~~~~~~~~~ 147 (193)
.|.......+.-+|++|+|+|+.++-..+.. ..|..... .++|.++++||+|...... .+++.+.++
T Consensus 112 DF~~Ev~raL~~~DgAvlVvda~~GV~~qT~-~v~~~a~~----~~lp~i~fINK~Dr~~ad~~~~~~~i~~~l~ 181 (548)
T 3vqt_A 112 DFSEDTYRVLTAVDSALVVIDAAKGVEAQTR-KLMDVCRM----RATPVMTFVNKMDREALHPLDVMADIEQHLQ 181 (548)
T ss_dssp GCSHHHHHHHHSCSEEEEEEETTTBSCHHHH-HHHHHHHH----TTCCEEEEEECTTSCCCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCceEEEeecCCCcccccH-HHHHHHHH----hCCceEEEEecccchhcchhHhhhhhhhhcC
Confidence 9998888899999999999999986333332 33333333 4899999999999864322 233555544
No 190
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.70 E-value=1.9e-17 Score=127.39 Aligned_cols=155 Identities=17% Similarity=0.150 Sum_probs=94.4
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHHhcC------Ccc--ccCC--CC-----------------Cccee-----------
Q 029453 16 LWQKEAKILFLGLDNSGKTTLLHMLKDE------RLV--QHQP--TQ-----------------YPTSE----------- 57 (193)
Q Consensus 16 ~~~~~~~i~i~G~~~~GKssl~~~l~~~------~~~--~~~~--t~-----------------~~~~~----------- 57 (193)
...+.++|+++|++|||||||++.+... +.. ...+ +. .+...
T Consensus 75 ~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i~~~~~~~~~~ 154 (355)
T 3p32_A 75 DSGNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTLG 154 (355)
T ss_dssp GCCCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------CHHHHTCTTEEEECCC--CCHH
T ss_pred hcCCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhhHHhhccCCCeeEEECCCCcccc
Confidence 3457789999999999999999998532 100 0000 00 00000
Q ss_pred -----------EEEeCCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEE
Q 029453 58 -----------ELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLI 126 (193)
Q Consensus 58 -----------~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pvii 126 (193)
.+...+..+.+|||||..... ......+|++++|+|....+..+... ......|+++
T Consensus 155 ~~~~~t~d~i~~~~~~~~~~iiiDTpGi~~~~---~~~~~~aD~vl~V~d~~~~~~~~~l~---------~~~~~~p~iv 222 (355)
T 3p32_A 155 GVTRATRETVVLLEAAGFDVILIETVGVGQSE---VAVANMVDTFVLLTLARTGDQLQGIK---------KGVLELADIV 222 (355)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEEECSCSSHH---HHHHTTCSEEEEEEESSTTCTTTTCC---------TTSGGGCSEE
T ss_pred chhHHHHHHHHHHhhCCCCEEEEeCCCCCcHH---HHHHHhCCEEEEEECCCCCccHHHHH---------HhHhhcCCEE
Confidence 012246789999999954322 23457899999999987654332111 1113469999
Q ss_pred EeeCCCCCCCCCHHH----HHHhhCCCccccCCCcccCCCCCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 127 LGNKIDIPYAASEDE----LRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 127 v~nK~Dl~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
|+||+|+.+...... +...+.... . ....+..+++++||++|.|+++++++|.+.+
T Consensus 223 VlNK~Dl~~~~~~~~~~~~l~~~l~~~~--~--------~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~ 282 (355)
T 3p32_A 223 VVNKADGEHHKEARLAARELSAAIRLIY--P--------REALWRPPVLTMSAVEGRGLAELWDTVERHR 282 (355)
T ss_dssp EEECCCGGGHHHHHHHHHHHHHHHHHHS--T--------TCCSCCCCEEEEBGGGTBSHHHHHHHHHHHH
T ss_pred EEECCCCcChhHHHHHHHHHHHHHhhcc--c--------cccCCCCceEEEEcCCCCCHHHHHHHHHHHH
Confidence 999999864322222 222211100 0 0001235799999999999999999997753
No 191
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.67 E-value=1.7e-16 Score=111.39 Aligned_cols=109 Identities=17% Similarity=0.172 Sum_probs=82.3
Q ss_pred cCChhhhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHH---HHHHhCCC-CCCCcEEEEeeCC-CCCCCCCHHHHHHh
Q 029453 71 LGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKREL---DALLSDEA-LADVPFLILGNKI-DIPYAASEDELRYH 145 (193)
Q Consensus 71 ~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~---~~~~~~~~-~~~~pviiv~nK~-Dl~~~~~~~~~~~~ 145 (193)
.+||++.+..|..|++++|++|||+|++|.+.+. ....+ ..++.... ..+.|++|.+||. |++..-+..++.+.
T Consensus 109 ~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~~EI~e~ 187 (227)
T 3l82_B 109 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHE 187 (227)
T ss_dssp --------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCHHHHHHH
T ss_pred cCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCCHHHHHHH
Confidence 3488899999999999999999999999876543 44444 34443332 3689999999995 78888899999999
Q ss_pred hCCCccccCCCcccCCCCCCccEEEEEEeeecCCChhHHHHhhhhhcC
Q 029453 146 MGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYIK 193 (193)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l~ 193 (193)
+++... .+.|.++.|||++|+|+.+.++||.+.++
T Consensus 188 L~L~~l-------------~R~W~Iq~csA~TGeGL~EGLdWL~~~l~ 222 (227)
T 3l82_B 188 LHLNLL-------------NHPWLVQDTEAETLTGFLNGIEWILEEVE 222 (227)
T ss_dssp TTGGGG-------------CSCEEEEEEETTTCTTHHHHHHHHTTTTT
T ss_pred cCCcCC-------------CCCEEEEEeECCCCcCHHHHHHHHHHHHH
Confidence 988762 15699999999999999999999988753
No 192
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.67 E-value=1.1e-16 Score=129.34 Aligned_cols=115 Identities=20% Similarity=0.223 Sum_probs=78.5
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCcc----ccCCCCCcceeE-----------------------------------
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLV----QHQPTQYPTSEE----------------------------------- 58 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~----~~~~t~~~~~~~----------------------------------- 58 (193)
...++|+|+|.+|+|||||+|++.+.... ...++.......
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~ 142 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNR 142 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhccccccc
Confidence 35689999999999999999999988753 222222111000
Q ss_pred ---EEeCC---eEEEEEEcCChhh-----------hHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCC
Q 029453 59 ---LSIGK---IKFKAFDLGGHQM-----------ARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALAD 121 (193)
Q Consensus 59 ---~~~~~---~~~~~~D~~g~~~-----------~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (193)
+...+ ..+.+|||||+.. +......++..+|++++|+|+++.........++..+. . .+
T Consensus 143 ~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~-~---~~ 218 (550)
T 2qpt_A 143 FMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALR-G---HE 218 (550)
T ss_dssp EEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTT-T---CG
T ss_pred ceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHH-h---cC
Confidence 00000 2588999999764 44566667889999999999987533344444444442 2 46
Q ss_pred CcEEEEeeCCCCCCC
Q 029453 122 VPFLILGNKIDIPYA 136 (193)
Q Consensus 122 ~pviiv~nK~Dl~~~ 136 (193)
.|+++|+||+|+...
T Consensus 219 ~pvilVlNK~Dl~~~ 233 (550)
T 2qpt_A 219 DKIRVVLNKADMVET 233 (550)
T ss_dssp GGEEEEEECGGGSCH
T ss_pred CCEEEEEECCCccCH
Confidence 899999999999753
No 193
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.66 E-value=1.4e-16 Score=122.11 Aligned_cols=153 Identities=15% Similarity=0.141 Sum_probs=87.9
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcC------Ccc--ccCCCC-------------------Ccce--------eE----
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDE------RLV--QHQPTQ-------------------YPTS--------EE---- 58 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~------~~~--~~~~t~-------------------~~~~--------~~---- 58 (193)
.....|+|+|++|||||||+|.+.+. +.. ...++. .+.. ..
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg~ 151 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGV 151 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------CCSTTCTTEEEECC---------
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcCcchhchHHHHHHhcCCCCEEEEecCCccccccc
Confidence 34789999999999999999999752 110 111100 0000 00
Q ss_pred ----------EEeCCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEe
Q 029453 59 ----------LSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILG 128 (193)
Q Consensus 59 ----------~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~ 128 (193)
+...+..+.++||+|..... ....+.+|++++|+|++++...+.... .+ ...|.++|+
T Consensus 152 tr~~~~~~~~~~~~~~~~iliDT~Gi~~~~---~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i------l~~~~ivVl 219 (349)
T 2www_A 152 TRTTNEAILLCEGAGYDIILIETVGVGQSE---FAVADMVDMFVLLLPPAGGDELQGIKR---GI------IEMADLVAV 219 (349)
T ss_dssp CTTHHHHHHHHHHTTCSEEEEECCCC--CH---HHHHTTCSEEEEEECCC---------------------CCSCSEEEE
T ss_pred hHHHHHHHHhhccCCCCEEEEECCCcchhh---hhHHhhCCEEEEEEcCCcchhHHHhHH---HH------HhcCCEEEE
Confidence 01246788999999964222 334678999999999987532221111 11 246889999
Q ss_pred eCCCCCCCCC----HHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 129 NKIDIPYAAS----EDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 129 nK~Dl~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
||+|+.+... ..++...+.... ..+ ..+..+++++||++|.|+++++++|.+.+
T Consensus 220 NK~Dl~~~~~~~~~~~~l~~~l~~~~-~~a---------~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~ 277 (349)
T 2www_A 220 TKSDGDLIVPARRIQAEYVSALKLLR-KRS---------QVWKPKVIRISARSGEGISEMWDKMKDFQ 277 (349)
T ss_dssp CCCSGGGHHHHHHHHHHHHHHHTTCC---------------CCCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred eeecCCCchhHHHHHHHHHHHHHhcC-ccc---------cCCCceEEEEecCCCCCHHHHHHHHHHHH
Confidence 9999863211 112222222111 000 00234789999999999999999997653
No 194
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.65 E-value=4.5e-15 Score=113.59 Aligned_cols=79 Identities=20% Similarity=0.326 Sum_probs=59.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcc-ccCC--CCCcceeEEEeCC-----------------eEEEEEEcCChhhhHH-
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLV-QHQP--TQYPTSEELSIGK-----------------IKFKAFDLGGHQMARR- 79 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~-~~~~--t~~~~~~~~~~~~-----------------~~~~~~D~~g~~~~~~- 79 (193)
++|+++|.+|||||||+|++.+.... ...| |..++...+.+++ ..+.+|||||+.++..
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~ 82 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK 82 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccc
Confidence 68999999999999999999987743 2222 6666666666654 5799999999875432
Q ss_pred ------hHHhhhccCCEEEEEEeCCC
Q 029453 80 ------VWKDYYAKVDAVVYLIDAYD 99 (193)
Q Consensus 80 ------~~~~~~~~~d~ii~v~d~~~ 99 (193)
.+..+++.+|++++|+|+++
T Consensus 83 ~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 83 GEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred cchHHHHHHHHHHhcCeEEEEEecCC
Confidence 23345788999999999985
No 195
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.65 E-value=5.1e-16 Score=130.91 Aligned_cols=114 Identities=16% Similarity=0.112 Sum_probs=84.6
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHHhcCC------------cccc-------CCCCCcceeEEEeC--------------
Q 029453 16 LWQKEAKILFLGLDNSGKTTLLHMLKDER------------LVQH-------QPTQYPTSEELSIG-------------- 62 (193)
Q Consensus 16 ~~~~~~~i~i~G~~~~GKssl~~~l~~~~------------~~~~-------~~t~~~~~~~~~~~-------------- 62 (193)
...+..+|+|+|++|+|||||++++.... +... ..|.......+.+.
T Consensus 15 ~~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~ 94 (842)
T 1n0u_A 15 KVTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTD 94 (842)
T ss_dssp CGGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCC
T ss_pred CcccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEeccccccccccccccc
Confidence 45567899999999999999999997531 1100 11323333334443
Q ss_pred --CeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC
Q 029453 63 --KIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIP 134 (193)
Q Consensus 63 --~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~ 134 (193)
+..+.+||||||.+|...+..++..+|++|+|+|++++.+.+....|.... . .++|+++++||+|+.
T Consensus 95 ~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~-~----~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 95 GNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQAL-G----ERIKPVVVINKVDRA 163 (842)
T ss_dssp SSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHH-H----TTCEEEEEEECHHHH
T ss_pred CCCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHH-H----cCCCeEEEEECCCcc
Confidence 578999999999999988899999999999999999986666654443332 2 478999999999986
No 196
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.63 E-value=1.1e-16 Score=131.53 Aligned_cols=166 Identities=19% Similarity=0.171 Sum_probs=109.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc--CCcc------------cc-------CCCCCcceeEEEeCCeEEEEEEcCChhhhHHh
Q 029453 22 KILFLGLDNSGKTTLLHMLKD--ERLV------------QH-------QPTQYPTSEELSIGKIKFKAFDLGGHQMARRV 80 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~--~~~~------------~~-------~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~ 80 (193)
+|+|+|+.++|||||..++.. +... .. .-|.......+.+++..+.++|||||..|...
T Consensus 4 Ni~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~E 83 (638)
T 3j25_A 4 NIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLAE 83 (638)
T ss_dssp CCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHHH
Confidence 689999999999999999851 1110 00 01333444566778899999999999999999
Q ss_pred HHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCH---HHHHHhhCCCccccCCC-
Q 029453 81 WKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASE---DELRYHMGLTNFTTGKG- 156 (193)
Q Consensus 81 ~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~---~~~~~~~~~~~~~~~~~- 156 (193)
....+.-+|++|+|+|+.++-..+. ...+..... .++|.++++||+|....... +++.+.++....-....
T Consensus 84 v~raL~~~DgavlVVDa~~GV~~qT-~~v~~~a~~----~~lp~i~~INKmDr~~a~~~~~~~~i~~~l~~~~~~~~~~~ 158 (638)
T 3j25_A 84 VYRSLSVLDGAILLISAKDGVQAQT-RILFHALRK----MGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVE 158 (638)
T ss_dssp HHHHHTTCSEEECCEESSCTTCSHH-HHHHHHHHH----HTCSCEECCEECCSSSCCSHHHHHHHHHTTCCCCCCCCCCC
T ss_pred HHHHHHHhCEEEEEEeCCCCCcHHH-HHHHHHHHH----cCCCeEEEEeccccccCCHHHHHHHHHHHhCCCccccceeE
Confidence 9999999999999999987622222 223333322 37899999999998743332 33544444221100000
Q ss_pred --c-c-----------------------------cCCC-----------CCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 157 --N-V-----------------------------NLDN-----------TNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 157 --~-~-----------------------------~~~~-----------~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
. . .... ......+++..||+++.|++.+++.|.+++
T Consensus 159 ~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~i~~~~ 237 (638)
T 3j25_A 159 LYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSNIGIDNLIEVITNKF 237 (638)
T ss_dssp SCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCCCSTTCCSHHHHHHHHHHSC
T ss_pred eeccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhcccccccccccccccCCCchhHhhhhhccc
Confidence 0 0 0000 000225788899999999999999997754
No 197
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.63 E-value=3.7e-15 Score=123.27 Aligned_cols=156 Identities=13% Similarity=0.083 Sum_probs=97.4
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCccccC---CCCCcc---------------------------------------
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQHQ---PTQYPT--------------------------------------- 55 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~---~t~~~~--------------------------------------- 55 (193)
-.-++|+|+|.+++|||||+|.+.+..+.+.. .|..+.
T Consensus 49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~ 128 (772)
T 3zvr_A 49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 128 (772)
T ss_dssp GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence 36689999999999999999999987752111 121110
Q ss_pred ------------eeEEEeC-CeEEEEEEcCChhh-------------hHHhHHhhh-ccCCEEEEEEeCCChhhHHHHHH
Q 029453 56 ------------SEELSIG-KIKFKAFDLGGHQM-------------ARRVWKDYY-AKVDAVVYLIDAYDKERFSESKR 108 (193)
Q Consensus 56 ------------~~~~~~~-~~~~~~~D~~g~~~-------------~~~~~~~~~-~~~d~ii~v~d~~~~~~~~~~~~ 108 (193)
...+... ...+.++||||... .......++ ..+|++++|+|+++.........
T Consensus 129 ~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ 208 (772)
T 3zvr_A 129 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 208 (772)
T ss_dssp HCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHH
T ss_pred cCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHH
Confidence 0111111 23588999999432 333444455 46899999999987522222222
Q ss_pred HHHHHHhCCCCCCCcEEEEeeCCCCCCCCCH-HHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeeecCCChhHHHHh
Q 029453 109 ELDALLSDEALADVPFLILGNKIDIPYAASE-DELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKW 187 (193)
Q Consensus 109 ~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~ 187 (193)
.+..+ .. .+.|+++|+||+|+...... ..+.. -.... ......+++++||++|.|++++++.
T Consensus 209 ll~~L-~~---~g~pvIlVlNKiDlv~~~~~~~~il~-~~~~~------------l~lg~~~VV~iSA~~G~GvdeL~ea 271 (772)
T 3zvr_A 209 IAKEV-DP---QGQRTIGVITKLDLMDEGTDARDVLE-NKLLP------------LRRGYIGVVNRSQKDIDGKKDITAA 271 (772)
T ss_dssp HHHHH-CT---TCSSEEEEEECTTSSCTTCCSHHHHT-TCSSC------------CSSCEEECCCCCCEESSSSEEHHHH
T ss_pred HHHHH-Hh---cCCCEEEEEeCcccCCcchhhHHHHH-HHhhh------------hhccCCceEEecccccccchhHHHH
Confidence 33333 22 47899999999999743322 12211 00000 0013467899999999999999998
Q ss_pred hhh
Q 029453 188 LSQ 190 (193)
Q Consensus 188 i~~ 190 (193)
|.+
T Consensus 272 I~~ 274 (772)
T 3zvr_A 272 LAA 274 (772)
T ss_dssp HHH
T ss_pred HHH
Confidence 865
No 198
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.62 E-value=2.3e-16 Score=120.68 Aligned_cols=153 Identities=17% Similarity=0.143 Sum_probs=89.8
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhc------CCcc--ccCC--CC-----------------CcceeE-----------
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKD------ERLV--QHQP--TQ-----------------YPTSEE----------- 58 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~------~~~~--~~~~--t~-----------------~~~~~~----------- 58 (193)
..+...|+++|++|+||||+++.+.+ .+.. ...+ +. .+....
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~~~~~~~~i~~~~~~~~l~g 132 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGG 132 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----C
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhhccCCCceeecCccccccch
Confidence 45678999999999999999999852 1110 0000 00 000000
Q ss_pred -----------EEeCCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEE
Q 029453 59 -----------LSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLIL 127 (193)
Q Consensus 59 -----------~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv 127 (193)
+...+.++.++||||....... ....+|++++|+|++..+.++.... .. .+.|.++|
T Consensus 133 ~~~~~~~~~~~~~~~~~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~~~l~~---~~------~~~p~ivv 200 (341)
T 2p67_A 133 ASQRARELMLLCEAAGYDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDDLQGIKK---GL------MEVADLIV 200 (341)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEEEECCTTHHHH---HHTTCSEEEEEECC------CCCCH---HH------HHHCSEEE
T ss_pred hHHHHHHHHHHhhccCCCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHHHHHHHH---hh------hcccCEEE
Confidence 0134678999999997654332 3578999999999976532211100 11 14688999
Q ss_pred eeCCCCCCCCCHH----HHHHhhCCCccccCCCcccCCCCCCccEEEEEEeeecCCChhHHHHhhhhh
Q 029453 128 GNKIDIPYAASED----ELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQY 191 (193)
Q Consensus 128 ~nK~Dl~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~ 191 (193)
+||+|+....... ++...+.... . . ...+..+++++||++|.|+++++++|.+.
T Consensus 201 ~NK~Dl~~~~~~~~~~~~l~~~l~~~~--~-~-------~~~~~~~vi~iSA~~g~gi~~L~~~l~~~ 258 (341)
T 2p67_A 201 INKDDGDNHTNVAIARHMYESALHILR--R-K-------YDEWQPRVLTCSALEKRGIDEIWHAIIDF 258 (341)
T ss_dssp ECCCCTTCHHHHHHHHHHHHHHHHHSC--C-S-------BTTBCCEEEECBGGGTBSHHHHHHHHHHH
T ss_pred EECCCCCChHHHHHHHHHHHHHHHhcc--c-c-------ccCCCCcEEEeeCCCCCCHHHHHHHHHHH
Confidence 9999986432222 2222111100 0 0 00023478999999999999999999764
No 199
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.62 E-value=1.3e-16 Score=114.73 Aligned_cols=147 Identities=15% Similarity=0.184 Sum_probs=89.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCccc-------cCCCC----------CcceeEE------------------EeCC
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERLVQ-------HQPTQ----------YPTSEEL------------------SIGK 63 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~~~-------~~~t~----------~~~~~~~------------------~~~~ 63 (193)
+..+|+++|.+|||||||++++.+..... ..+.. +.....+ ...+
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD 108 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence 55799999999999999999997542110 01100 0000111 1134
Q ss_pred eEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC--CCHHH
Q 029453 64 IKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYA--ASEDE 141 (193)
Q Consensus 64 ~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~--~~~~~ 141 (193)
.++.+|||+|+..... .+-...+.+++|+|+.+.... ... +... .+.|+++|+||+|+... ...++
T Consensus 109 ~d~iiidt~G~~~~~~---~~~~~~~~~i~vvd~~~~~~~--~~~-~~~~------~~~~~iiv~NK~Dl~~~~~~~~~~ 176 (221)
T 2wsm_A 109 CDLLLIENVGNLICPV---DFDLGENYRVVMVSVTEGDDV--VEK-HPEI------FRVADLIVINKVALAEAVGADVEK 176 (221)
T ss_dssp CSEEEEEEEEBSSGGG---GCCCSCSEEEEEEEGGGCTTH--HHH-CHHH------HHTCSEEEEECGGGHHHHTCCHHH
T ss_pred CCEEEEeCCCCCCCCc---hhccccCcEEEEEeCCCcchh--hhh-hhhh------hhcCCEEEEecccCCcchhhHHHH
Confidence 5788999999511100 111246889999999765321 111 1111 25789999999998632 34444
Q ss_pred HHHhhCCCccccCCCcccCCCCCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 142 LRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
+...+.... ...+++++||++|.|+++++++|.+.+
T Consensus 177 ~~~~~~~~~---------------~~~~i~~~Sa~~g~gi~~l~~~l~~~~ 212 (221)
T 2wsm_A 177 MKADAKLIN---------------PRAKIIEMDLKTGKGFEEWIDFLRGIL 212 (221)
T ss_dssp HHHHHHHHC---------------TTSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred HHHHHHHhC---------------CCCeEEEeecCCCCCHHHHHHHHHHHH
Confidence 444332111 225789999999999999999998754
No 200
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.60 E-value=4.7e-16 Score=117.00 Aligned_cols=152 Identities=15% Similarity=0.203 Sum_probs=71.9
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcC-CccccC---------CCCCcceeEEEe----CCeEEEEEEcCCh-------h
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDE-RLVQHQ---------PTQYPTSEELSI----GKIKFKAFDLGGH-------Q 75 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~-~~~~~~---------~t~~~~~~~~~~----~~~~~~~~D~~g~-------~ 75 (193)
..-+++|+++|++|||||||++++++. .+.... ++.......+.. ....+.+||++|+ +
T Consensus 15 ~~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e 94 (301)
T 2qnr_A 15 KGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRD 94 (301)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC----------
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHH
Confidence 446789999999999999999998875 332211 121111111111 1357899999997 4
Q ss_pred hhHHhHH-------hhhc-------------cCCEEEEEEeCCChhhHHHHH-HHHHHHHhCCCCCCCcEEEEeeCCCCC
Q 029453 76 MARRVWK-------DYYA-------------KVDAVVYLIDAYDKERFSESK-RELDALLSDEALADVPFLILGNKIDIP 134 (193)
Q Consensus 76 ~~~~~~~-------~~~~-------------~~d~ii~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~pviiv~nK~Dl~ 134 (193)
.+..... .++. .+++++|+.+.+.. ++.... ..+..+ . ...|+++|+||+|+.
T Consensus 95 ~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~-~Ld~~~~~~l~~l-~----~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 95 CFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGH-GLKPLDVAFMKAI-H----NKVNIVPVIAKADTL 168 (301)
T ss_dssp -CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSS-SCCHHHHHHHHHH-T----TTSCEEEEECCGGGS
T ss_pred HHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCccc-CCCHHHHHHHHHH-H----hcCCEEEEEEeCCCC
Confidence 4333332 3322 23456666664321 122222 233333 1 367999999999986
Q ss_pred CCCCHH----HHHHhhCCCccccCCCcccCCCCCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 135 YAASED----ELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 135 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
...... +..+.... ..++++++||+++ |++++|+++.+.+
T Consensus 169 ~~~e~~~~~~~~~~~~~~-----------------~~~~~~e~Sa~~~-~v~e~f~~l~~~i 212 (301)
T 2qnr_A 169 TLKERERLKKRILDEIEE-----------------HNIKIYHLPDAES-DEDEDFKEQTRLL 212 (301)
T ss_dssp CHHHHHHHHHHHHHHHHH-----------------TTCCCCCCC----------CHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH-----------------cCCeEEecCCccc-cccHHHHHHHHHh
Confidence 421111 11111110 1246789999999 9999999887654
No 201
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.60 E-value=1.8e-16 Score=116.96 Aligned_cols=125 Identities=12% Similarity=0.028 Sum_probs=67.6
Q ss_pred eEEEEEEcCChhhhHHh------HHhhhccCCEEEEEEeCCChhhHHHHHHH---HHHHHhCCCCCCCcEEEEeeCCCCC
Q 029453 64 IKFKAFDLGGHQMARRV------WKDYYAKVDAVVYLIDAYDKERFSESKRE---LDALLSDEALADVPFLILGNKIDIP 134 (193)
Q Consensus 64 ~~~~~~D~~g~~~~~~~------~~~~~~~~d~ii~v~d~~~~~~~~~~~~~---~~~~~~~~~~~~~pviiv~nK~Dl~ 134 (193)
.++.+|||||+...... ....+.. +++++++|+............ ....... .+.|+++|+||+|+.
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~---~~~p~~iv~NK~D~~ 184 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLR---LGATTIPALNKVDLL 184 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHH---HTSCEEEEECCGGGC
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcc---cCCCeEEEEeccccc
Confidence 47999999998765332 1124456 899999998643222222211 1111111 368999999999986
Q ss_pred CCCCHHHHHHhhCC-CccccCC----Cccc--------CCCCCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 135 YAASEDELRYHMGL-TNFTTGK----GNVN--------LDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 135 ~~~~~~~~~~~~~~-~~~~~~~----~~~~--------~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
.....+++...+.. ..+.... .... .........+++++||++|.|+++++++|.+.+
T Consensus 185 ~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~ 255 (262)
T 1yrb_A 185 SEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHY 255 (262)
T ss_dssp CHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHh
Confidence 43222222222110 0000000 0000 000000113679999999999999999998754
No 202
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.57 E-value=2.1e-14 Score=110.46 Aligned_cols=111 Identities=19% Similarity=0.142 Sum_probs=80.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcc-ccCC--CCCcceeEEEeCCeEEEEEEcCChhhh-------HHhHHhhhccCCE
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLV-QHQP--TQYPTSEELSIGKIKFKAFDLGGHQMA-------RRVWKDYYAKVDA 90 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~-------~~~~~~~~~~~d~ 90 (193)
.+|+++|.||||||||+|++.+.... ..+| |..+....+.+.+..+.++||||.... .......++.+|+
T Consensus 73 a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad~ 152 (376)
T 4a9a_A 73 ASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVARTCNL 152 (376)
T ss_dssp EEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHHHHCSE
T ss_pred CeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHHhcCc
Confidence 48999999999999999999987643 3333 778888999999999999999995321 1223345678999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhC-CCCCCCcEEEEeeCCCC
Q 029453 91 VVYLIDAYDKERFSESKRELDALLSD-EALADVPFLILGNKIDI 133 (193)
Q Consensus 91 ii~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~~pviiv~nK~Dl 133 (193)
+++|+|++++. ........++... ......|.++++||+|.
T Consensus 153 il~vvD~~~p~--~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~ 194 (376)
T 4a9a_A 153 LFIILDVNKPL--HHKQIIEKELEGVGIRLNKTPPDILIKKKEK 194 (376)
T ss_dssp EEEEEETTSHH--HHHHHHHHHHHHTTEEETCCCCCEEEEECSS
T ss_pred cccccccCccH--HHHHHHHHHHHHhhHhhccCChhhhhhHhhh
Confidence 99999999873 2222222222111 12246788999999996
No 203
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=99.56 E-value=2.5e-15 Score=110.32 Aligned_cols=109 Identities=17% Similarity=0.191 Sum_probs=85.1
Q ss_pred cCChhhhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHH---HHHhCC-CCCCCcEEEEeeC-CCCCCCCCHHHHHHh
Q 029453 71 LGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELD---ALLSDE-ALADVPFLILGNK-IDIPYAASEDELRYH 145 (193)
Q Consensus 71 ~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~---~~~~~~-~~~~~pviiv~nK-~Dl~~~~~~~~~~~~ 145 (193)
.+||++.+..|..|++++|++|||+|++|.+++. ....+. .++... ...+.|++|.+|| -|++...+..++.+.
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~ 272 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHE 272 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHHH
Confidence 4578899999999999999999999999986644 333222 333221 1358999999997 589888899999999
Q ss_pred hCCCccccCCCcccCCCCCCccEEEEEEeeecCCChhHHHHhhhhhcC
Q 029453 146 MGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYIK 193 (193)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l~ 193 (193)
+++... .+.|.++.|||.+|+|+.+.++||.+.++
T Consensus 273 L~L~~l-------------~r~W~Iq~csA~tGeGL~EGldWL~~~l~ 307 (312)
T 3l2o_B 273 LHLNLL-------------NHPWLVQDTEAETLTGFLNGIEWILEEVE 307 (312)
T ss_dssp TTGGGG-------------CSCEEEEEEETTTCTTHHHHHHHHHHHSC
T ss_pred cCCccC-------------CCcEEEEecccCCCcCHHHHHHHHHHHHH
Confidence 988762 15699999999999999999999988763
No 204
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.55 E-value=7.2e-14 Score=116.19 Aligned_cols=109 Identities=15% Similarity=0.024 Sum_probs=76.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC--------------cccc---CC----CCCcceeEEEeC-------CeEEEEEEcCC
Q 029453 22 KILFLGLDNSGKTTLLHMLKDER--------------LVQH---QP----TQYPTSEELSIG-------KIKFKAFDLGG 73 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~~--------------~~~~---~~----t~~~~~~~~~~~-------~~~~~~~D~~g 73 (193)
+|+|+|+.++|||||..+|.... +... +. |.......+.+. ++.+.++||||
T Consensus 15 Ni~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDTPG 94 (709)
T 4fn5_A 15 NIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVIDTPG 94 (709)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEECCCS
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEeCCC
Confidence 79999999999999999985111 0000 11 222333344443 57899999999
Q ss_pred hhhhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC
Q 029453 74 HQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY 135 (193)
Q Consensus 74 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~ 135 (193)
|..|.......+.-+|++|+|+|+.++-..+.- ..++.... .++|.++++||+|...
T Consensus 95 HvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~-~v~~~a~~----~~lp~i~~iNKiDr~~ 151 (709)
T 4fn5_A 95 HVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSE-TVWRQANK----YGVPRIVYVNKMDRQG 151 (709)
T ss_dssp CTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHH-HHHHHHHH----HTCCEEEEEECSSSTT
T ss_pred CcccHHHHHHHHHHhCeEEEEEECCCCCchhHH-HHHHHHHH----cCCCeEEEEccccccC
Confidence 999999888999999999999999876322222 23333333 3899999999999863
No 205
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.53 E-value=1.3e-15 Score=114.69 Aligned_cols=131 Identities=14% Similarity=-0.013 Sum_probs=95.5
Q ss_pred HHHHHHhcCCcc--ccCCCCCcceeEEEe-CCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCChh-hHHHHHHHH
Q 029453 35 TLLHMLKDERLV--QHQPTQYPTSEELSI-GKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKE-RFSESKREL 110 (193)
Q Consensus 35 sl~~~l~~~~~~--~~~~t~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~-~~~~~~~~~ 110 (193)
+++.++..+.+. .+.||.+... .... .+..+.+||+ ++++..++..++.++|++++|+|++++. ++..+..|+
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~-~~~~~~~~~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l 108 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRV-EYTPDETGSGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFL 108 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEE-EEECCCSSSEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHH
T ss_pred cEEEEEEcccccccCCCCCCccEE-EEEEcCCCeEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHH
Confidence 567777777664 3456777433 2332 2237899999 8888888889999999999999999986 677778887
Q ss_pred HHHHhCCCCCCCcEEEEeeCCCCCCCCCH---HHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeeecCCChhHHHHh
Q 029453 111 DALLSDEALADVPFLILGNKIDIPYAASE---DELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKW 187 (193)
Q Consensus 111 ~~~~~~~~~~~~pviiv~nK~Dl~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~ 187 (193)
..+.. .++|+++|+||+|+.+.... .++...++. . .+++++||++|.|++++|++
T Consensus 109 ~~~~~----~~~piilv~NK~DL~~~~~v~~~~~~~~~~~~-----------------~-~~~~~~SAktg~gv~~lf~~ 166 (301)
T 1u0l_A 109 VLAEK----NELETVMVINKMDLYDEDDLRKVRELEEIYSG-----------------L-YPIVKTSAKTGMGIEELKEY 166 (301)
T ss_dssp HHHHH----TTCEEEEEECCGGGCCHHHHHHHHHHHHHHTT-----------------T-SCEEECCTTTCTTHHHHHHH
T ss_pred HHHHH----CCCCEEEEEeHHHcCCchhHHHHHHHHHHHhh-----------------h-CcEEEEECCCCcCHHHHHHH
Confidence 76643 47999999999999643221 122222211 1 46899999999999999998
Q ss_pred hhh
Q 029453 188 LSQ 190 (193)
Q Consensus 188 i~~ 190 (193)
+..
T Consensus 167 l~g 169 (301)
T 1u0l_A 167 LKG 169 (301)
T ss_dssp HSS
T ss_pred hcC
Confidence 864
No 206
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.53 E-value=1.4e-13 Score=105.90 Aligned_cols=79 Identities=18% Similarity=0.271 Sum_probs=57.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcc-ccCC--CCCcceeEEEeC---------------------CeEEEEEEcCChhh
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLV-QHQP--TQYPTSEELSIG---------------------KIKFKAFDLGGHQM 76 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~-~~~~--t~~~~~~~~~~~---------------------~~~~~~~D~~g~~~ 76 (193)
++|+++|.+|||||||+|++.+.... ...+ |..++....... ...+.+|||||..+
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 58999999999999999999876421 2222 555665555432 35799999999764
Q ss_pred h-------HHhHHhhhccCCEEEEEEeCCC
Q 029453 77 A-------RRVWKDYYAKVDAVVYLIDAYD 99 (193)
Q Consensus 77 ~-------~~~~~~~~~~~d~ii~v~d~~~ 99 (193)
. ...+...++.+|++++|+|+++
T Consensus 82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred cccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 3 2233445789999999999975
No 207
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.52 E-value=1.8e-14 Score=109.98 Aligned_cols=153 Identities=12% Similarity=0.096 Sum_probs=88.5
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhc------CCcc--ccCCC--C-----------------CcceeE-----------
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKD------ERLV--QHQPT--Q-----------------YPTSEE----------- 58 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~------~~~~--~~~~t--~-----------------~~~~~~----------- 58 (193)
..+...++++|++|||||||++.+.+ ++.. ...++ . .+....
T Consensus 52 ~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G 131 (337)
T 2qm8_A 52 TGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGG 131 (337)
T ss_dssp CCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccccccCcccccccc
Confidence 45677999999999999999999972 3321 10110 0 000000
Q ss_pred -----------EEeCCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEE
Q 029453 59 -----------LSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLIL 127 (193)
Q Consensus 59 -----------~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv 127 (193)
+...+.++.++||||...... ...+.+|.+++|+|...++..+...... ...|.+++
T Consensus 132 ~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~---~v~~~~d~vl~v~d~~~~~~~~~i~~~i---------~~~~~ivv 199 (337)
T 2qm8_A 132 VAAKTRETMLLCEAAGFDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDELQGIKKGI---------FELADMIA 199 (337)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC------CCTTH---------HHHCSEEE
T ss_pred hHHHHHHHHHHHhcCCCCEEEEECCCCCcchh---hHHhhCCEEEEEEcCCCcccHHHHHHHH---------hccccEEE
Confidence 112577899999999754322 2346899999999986543211111100 13466888
Q ss_pred eeCCCCCCCCC-----HHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeeecCCChhHHHHhhhhh
Q 029453 128 GNKIDIPYAAS-----EDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQY 191 (193)
Q Consensus 128 ~nK~Dl~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~ 191 (193)
+||+|+.+... .+++...+..... .. ..+..+++.+||+++.|++++++.|.+.
T Consensus 200 lNK~Dl~~~~~~s~~~~~~l~~a~~l~~~-~~---------~~~~~~vl~~Sal~g~gi~~L~~~I~~~ 258 (337)
T 2qm8_A 200 VNKADDGDGERRASAAASEYRAALHILTP-PS---------ATWTPPVVTISGLHGKGLDSLWSRIEDH 258 (337)
T ss_dssp EECCSTTCCHHHHHHHHHHHHHHHTTBCC-SB---------TTBCCCEEEEBTTTTBSHHHHHHHHHHH
T ss_pred EEchhccCchhHHHHHHHHHHHHHHhccc-cc---------cCCCCCEEEEeCCCCCCHHHHHHHHHHH
Confidence 89999753211 1122222211110 00 0012467889999999999999998764
No 208
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.51 E-value=4.4e-15 Score=115.92 Aligned_cols=154 Identities=16% Similarity=0.166 Sum_probs=67.7
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCcc-ccC--------CCCCcceeEE--EeC--CeEEEEEEcCChhhhH------
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLV-QHQ--------PTQYPTSEEL--SIG--KIKFKAFDLGGHQMAR------ 78 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~-~~~--------~t~~~~~~~~--~~~--~~~~~~~D~~g~~~~~------ 78 (193)
.-+++|+++|++|||||||++.+++.... ... ++........ ... ...+.+||++|.....
T Consensus 29 ~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~ 108 (418)
T 2qag_C 29 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW 108 (418)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------C
T ss_pred CCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhH
Confidence 35678999999999999999999987653 111 1111111111 111 2368999999976431
Q ss_pred -Hh-------HHh-----------hhcc--CCEEEEEEeCCChhhHHHHH-HHHHHHHhCCCCCCCcEEEEeeCCCCCCC
Q 029453 79 -RV-------WKD-----------YYAK--VDAVVYLIDAYDKERFSESK-RELDALLSDEALADVPFLILGNKIDIPYA 136 (193)
Q Consensus 79 -~~-------~~~-----------~~~~--~d~ii~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~pviiv~nK~Dl~~~ 136 (193)
.. ... ++.+ +++++|+.+.+. .++.... .++..+ . .+.|+++|+||+|+...
T Consensus 109 ~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~-~~L~~~d~~~lk~L-~----~~v~iIlVinK~Dll~~ 182 (418)
T 2qag_C 109 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSG-HGLKPLDIEFMKRL-H----EKVNIIPLIAKADTLTP 182 (418)
T ss_dssp HHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-C-CSCCHHHHHHHHHH-T----TTSEEEEEEESTTSSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcc-cCCCHHHHHHHHHH-h----ccCcEEEEEEcccCccH
Confidence 11 111 1223 345666655431 1233333 444444 2 37899999999998632
Q ss_pred CCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeeecCCChhHHHHhhhh
Q 029453 137 ASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQ 190 (193)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~ 190 (193)
.....+........ .. ..++++.+|++++.++++++..|.+
T Consensus 183 ~ev~~~k~~i~~~~-~~------------~~i~~~~~sa~~~~~v~~~~~~l~~ 223 (418)
T 2qag_C 183 EECQQFKKQIMKEI-QE------------HKIKIYEFPETDDEEENKLVKKIKD 223 (418)
T ss_dssp HHHHHHHHHHHHHH-HH------------HTCCCCCCC----------------
T ss_pred HHHHHHHHHHHHHH-HH------------cCCeEEeCCCCCCcCHHHHHHHHHh
Confidence 21211111111000 00 1134566777777777776665544
No 209
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.47 E-value=2.2e-14 Score=103.48 Aligned_cols=57 Identities=23% Similarity=0.299 Sum_probs=40.2
Q ss_pred CCcEEEEeeCCCCCCC--CCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 121 DVPFLILGNKIDIPYA--ASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 121 ~~pviiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
..|.++|+||+|+... ...+++...+.... ...+++++||++|.|++++|++|.+.+
T Consensus 164 ~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~Sa~~g~gv~~l~~~l~~~~ 222 (226)
T 2hf9_A 164 KTADLIVINKIDLADAVGADIKKMENDAKRIN---------------PDAEVVLLSLKTMEGFDKVLEFIEKSV 222 (226)
T ss_dssp TTCSEEEEECGGGHHHHTCCHHHHHHHHHHHC---------------TTSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred hcCCEEEEeccccCchhHHHHHHHHHHHHHhC---------------CCCeEEEEEecCCCCHHHHHHHHHHHH
Confidence 4678999999998632 34444433332111 224789999999999999999997654
No 210
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.34 E-value=2.8e-12 Score=99.13 Aligned_cols=86 Identities=20% Similarity=0.342 Sum_probs=55.5
Q ss_pred CCCCcccEEEEEcCCCCCHHHHHHHHhcCCcc-ccC--CCCCcceeEEEeCC-----------------eEEEEEEcCCh
Q 029453 15 GLWQKEAKILFLGLDNSGKTTLLHMLKDERLV-QHQ--PTQYPTSEELSIGK-----------------IKFKAFDLGGH 74 (193)
Q Consensus 15 ~~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~-~~~--~t~~~~~~~~~~~~-----------------~~~~~~D~~g~ 74 (193)
.......+|+++|.+|||||||+|++.+.... ... .|..++...+.+.+ ..+.+||+||.
T Consensus 17 g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl 96 (396)
T 2ohf_A 17 GRFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGL 96 (396)
T ss_dssp CCSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-
T ss_pred hhccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCc
Confidence 34567889999999999999999999987643 222 25566666666543 35899999998
Q ss_pred hhhHH-------hHHhhhccCCEEEEEEeCCCh
Q 029453 75 QMARR-------VWKDYYAKVDAVVYLIDAYDK 100 (193)
Q Consensus 75 ~~~~~-------~~~~~~~~~d~ii~v~d~~~~ 100 (193)
..... .+..+++.+|++++|+|+++.
T Consensus 97 ~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~~ 129 (396)
T 2ohf_A 97 VKGAHNGQGLGNAFLSHISACDGIFHLTRAFED 129 (396)
T ss_dssp ----------CCHHHHHHHTSSSEEEEEEC---
T ss_pred ccccchhhHHHHHHHHHHHhcCeEEEEEecCCC
Confidence 76443 455678899999999999753
No 211
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=99.19 E-value=3.1e-10 Score=90.52 Aligned_cols=162 Identities=18% Similarity=0.106 Sum_probs=90.1
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHh------cCCccccCC-CCC---------------cceeE-----------------
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLK------DERLVQHQP-TQY---------------PTSEE----------------- 58 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~------~~~~~~~~~-t~~---------------~~~~~----------------- 58 (193)
.+...|+++|++||||||+++.+. +.+..-... +.. .....
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~ 178 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK 178 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence 345689999999999999999997 433210000 000 00000
Q ss_pred EEeCCeEEEEEEcCChhhh----HHhHHhh--hccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcE-EEEeeCC
Q 029453 59 LSIGKIKFKAFDLGGHQMA----RRVWKDY--YAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPF-LILGNKI 131 (193)
Q Consensus 59 ~~~~~~~~~~~D~~g~~~~----~~~~~~~--~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pv-iiv~nK~ 131 (193)
....+.++.++||||.... ....... .-.+|.+++|+|+..... .......+ .. ..|+ .+|+||+
T Consensus 179 ~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~---~~~~a~~~-~~----~~~i~gvVlNK~ 250 (504)
T 2j37_W 179 FKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQA---CEAQAKAF-KD----KVDVASVIVTKL 250 (504)
T ss_dssp HHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTT---HHHHHHHH-HH----HHCCCCEEEECT
T ss_pred HHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEecccccc---HHHHHHHH-Hh----hcCceEEEEeCC
Confidence 0115678999999996422 1111111 126899999999987532 11222222 11 2565 8999999
Q ss_pred CCCCCCC-HHHHHHhhCCCc--cccCCCcccCCCCCCccEEEEEEeeecCCC-hhHHHHhhhhh
Q 029453 132 DIPYAAS-EDELRYHMGLTN--FTTGKGNVNLDNTNVRPLEVFMCSIVRKMG-YGEGFKWLSQY 191 (193)
Q Consensus 132 Dl~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g-i~~~~~~i~~~ 191 (193)
|...... .-.+...++.+. +........+ ....+...+|+..|.| +.++++++.+.
T Consensus 251 D~~~~~g~~l~~~~~~g~PI~fig~ge~~~dl----~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 251 DGHAKGGGALSAVAATKSPIIFIGTGEHIDDF----EPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp TSCCCCTHHHHHHHHHCCCEEEEECSSSTTCE----ECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred ccccchHHHHHHHHHhCCCeEEeccccchhhh----hccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 9874332 223444444432 1111111100 0112345689999999 99999998754
No 212
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.10 E-value=5.5e-10 Score=86.46 Aligned_cols=84 Identities=21% Similarity=0.336 Sum_probs=63.8
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHHhcCCc-c-ccCC--CCCcceeEEEeCC-----------------eEEEEEEcCCh
Q 029453 16 LWQKEAKILFLGLDNSGKTTLLHMLKDERL-V-QHQP--TQYPTSEELSIGK-----------------IKFKAFDLGGH 74 (193)
Q Consensus 16 ~~~~~~~i~i~G~~~~GKssl~~~l~~~~~-~-~~~~--t~~~~~~~~~~~~-----------------~~~~~~D~~g~ 74 (193)
...+..+++++|++|||||||+|.+.+... . ...| |..++...+.+.+ ..+.+||+||.
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 455678999999999999999999998764 2 3333 6677777777764 46899999994
Q ss_pred hh-------hHHhHHhhhccCCEEEEEEeCCC
Q 029453 75 QM-------ARRVWKDYYAKVDAVVYLIDAYD 99 (193)
Q Consensus 75 ~~-------~~~~~~~~~~~~d~ii~v~d~~~ 99 (193)
.. ....+...+..+|++++|+|+.+
T Consensus 96 ~~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 96 TKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred ccCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 32 22344556788999999999863
No 213
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.09 E-value=3.4e-11 Score=90.50 Aligned_cols=96 Identities=18% Similarity=0.042 Sum_probs=69.7
Q ss_pred hhhhHHhHHhhhccCCEEEEEEeCCChh-hHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC---HHHHHHhhCCC
Q 029453 74 HQMARRVWKDYYAKVDAVVYLIDAYDKE-RFSESKRELDALLSDEALADVPFLILGNKIDIPYAAS---EDELRYHMGLT 149 (193)
Q Consensus 74 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~---~~~~~~~~~~~ 149 (193)
++++..+...++.++|++++|+|++++. ++..+..|+..+.. .++|+++|+||+|+.+... .+++...+..
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~----~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~- 140 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY----FKVEPVIVFNKIDLLNEEEKKELERWISIYRD- 140 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH----TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHH-
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh----CCCCEEEEEEcccCCCccccHHHHHHHHHHHH-
Confidence 5555555566889999999999999885 77777777775543 4799999999999964321 1222222211
Q ss_pred ccccCCCcccCCCCCCccEEEEEEeeecCCChhHHHHhhhh
Q 029453 150 NFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQ 190 (193)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~ 190 (193)
...+++++||++|.|++++++.+..
T Consensus 141 ----------------~g~~~~~~SA~~g~gi~~L~~~l~G 165 (302)
T 2yv5_A 141 ----------------AGYDVLKVSAKTGEGIDELVDYLEG 165 (302)
T ss_dssp ----------------TTCEEEECCTTTCTTHHHHHHHTTT
T ss_pred ----------------CCCeEEEEECCCCCCHHHHHhhccC
Confidence 1137899999999999999998865
No 214
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.98 E-value=1.3e-09 Score=85.05 Aligned_cols=110 Identities=14% Similarity=0.166 Sum_probs=58.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccccCC---CCCcce--eEEEe--CC--eEEEEEEcCChhhh--------------
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLVQHQP---TQYPTS--EELSI--GK--IKFKAFDLGGHQMA-------------- 77 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~---t~~~~~--~~~~~--~~--~~~~~~D~~g~~~~-------------- 77 (193)
++++|+|++|||||||+|.+++........ +..... ..+.. .+ ..+.++|++|....
T Consensus 43 ~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i 122 (427)
T 2qag_B 43 FNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFI 122 (427)
T ss_dssp EEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHHH
Confidence 469999999999999999998875331111 111111 11111 12 26789999874311
Q ss_pred HHhHHhhh-------------cc--CCE-EEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC
Q 029453 78 RRVWKDYY-------------AK--VDA-VVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYA 136 (193)
Q Consensus 78 ~~~~~~~~-------------~~--~d~-ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~ 136 (193)
...+..++ .. +|+ +.++.|...+ +......+...+. .+.|+++|+||+|....
T Consensus 123 ~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~--l~~~Dieilk~L~----~~~~vI~Vi~KtD~Lt~ 191 (427)
T 2qag_B 123 DAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHS--LKSLDLVTMKKLD----SKVNIIPIIAKADAISK 191 (427)
T ss_dssp HHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC-----CHHHHHHHHHTC----SCSEEEEEESCGGGSCH
T ss_pred HHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCC--CCHHHHHHHHHHh----hCCCEEEEEcchhccch
Confidence 11111111 11 233 5556666544 3333333333332 47899999999998643
No 215
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.95 E-value=3.3e-09 Score=78.37 Aligned_cols=109 Identities=20% Similarity=0.236 Sum_probs=60.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccccC----------CCCCcceeEEEeC----CeEEEEEEcCChhh---------
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDERLVQHQ----------PTQYPTSEELSIG----KIKFKAFDLGGHQM--------- 76 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~~~~~~~----------~t~~~~~~~~~~~----~~~~~~~D~~g~~~--------- 76 (193)
.++++++|++|||||||+|.+++....... .+........-.. ...+.++|++|...
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence 478999999999999999999864432110 0111111111111 13678999997321
Q ss_pred -hH--------HhHHhh----------hccCCEEEEEEeCC-ChhhHHHH-HHHHHHHHhCCCCCCCcEEEEeeCCCCCC
Q 029453 77 -AR--------RVWKDY----------YAKVDAVVYLIDAY-DKERFSES-KRELDALLSDEALADVPFLILGNKIDIPY 135 (193)
Q Consensus 77 -~~--------~~~~~~----------~~~~d~ii~v~d~~-~~~~~~~~-~~~~~~~~~~~~~~~~pviiv~nK~Dl~~ 135 (193)
.. ...... +..+++.++++|.. .+ +... ...+..+ .. ..++++|+||+|...
T Consensus 82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~g--L~~lD~~~l~~L-~~----~~~vI~Vi~K~D~lt 154 (270)
T 3sop_A 82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHS--LRPLDLEFMKHL-SK----VVNIIPVIAKADTMT 154 (270)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSS--CCHHHHHHHHHH-HT----TSEEEEEETTGGGSC
T ss_pred HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCc--CCHHHHHHHHHH-Hh----cCcEEEEEeccccCC
Confidence 00 001111 11368889999965 22 2222 2333333 32 289999999999864
No 216
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.93 E-value=9e-10 Score=81.93 Aligned_cols=100 Identities=21% Similarity=0.175 Sum_probs=66.1
Q ss_pred EEEcCChh-hhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhh
Q 029453 68 AFDLGGHQ-MARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHM 146 (193)
Q Consensus 68 ~~D~~g~~-~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~ 146 (193)
+-..|||. +........+..+|+++.|+|+.++.+... ..+..++ .++|+++|+||+|+.+....+.+.+.+
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~--~~l~~~l-----~~kp~ilVlNK~DL~~~~~~~~~~~~~ 75 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRN--PMIEDIL-----KNKPRIMLLNKADKADAAVTQQWKEHF 75 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSC--HHHHHHC-----SSSCEEEEEECGGGSCHHHHHHHHHHH
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCC--HHHHHHH-----CCCCEEEEEECcccCCHHHHHHHHHHH
Confidence 34578986 455666778899999999999998754431 1233332 479999999999997532223344443
Q ss_pred CCCccccCCCcccCCCCCCccEEEEEEeeecCCChhHHHHhhhhh
Q 029453 147 GLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQY 191 (193)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~ 191 (193)
... ..+++.+||+++.|++++++.+.+.
T Consensus 76 ~~~-----------------g~~~i~iSA~~~~gi~~L~~~i~~~ 103 (282)
T 1puj_A 76 ENQ-----------------GIRSLSINSVNGQGLNQIVPASKEI 103 (282)
T ss_dssp HTT-----------------TCCEEECCTTTCTTGGGHHHHHHHH
T ss_pred Hhc-----------------CCcEEEEECCCcccHHHHHHHHHHH
Confidence 211 1367899999999999999987654
No 217
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.92 E-value=5.8e-09 Score=81.29 Aligned_cols=160 Identities=13% Similarity=0.126 Sum_probs=85.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCccccCC-CC-C----cceeEEEeCC-eEEEEEEcCChhhh----HHhHH-hhhc
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERLVQHQP-TQ-Y----PTSEELSIGK-IKFKAFDLGGHQMA----RRVWK-DYYA 86 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~-t~-~----~~~~~~~~~~-~~~~~~D~~g~~~~----~~~~~-~~~~ 86 (193)
....++++|++|||||||+|.+.+-....... +. + .......... ..+.++|++|.... ..... ..+.
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~ 147 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFY 147 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGG
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHHHHHHHHHcCCC
Confidence 45589999999999999999998744321110 00 0 0111112222 25789999985421 11111 1233
Q ss_pred cCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC---------CCCCHHHHHHhhCCCcccc-CCC
Q 029453 87 KVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIP---------YAASEDELRYHMGLTNFTT-GKG 156 (193)
Q Consensus 87 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~---------~~~~~~~~~~~~~~~~~~~-~~~ 156 (193)
..+..++ ++...+. ..-......+.. .+.|+++|.||.|+. ......++.+.+....... ...
T Consensus 148 ~~~~~~~-lS~G~~~--kqrv~la~aL~~----~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~ 220 (413)
T 1tq4_A 148 EYDFFII-ISATRFK--KNDIDIAKAISM----MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFREN 220 (413)
T ss_dssp GCSEEEE-EESSCCC--HHHHHHHHHHHH----TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHT
T ss_pred ccCCeEE-eCCCCcc--HHHHHHHHHHHh----cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 4465555 7776321 111222233332 368999999999963 2223333333322211000 000
Q ss_pred cccCCCCCCccEEEEEEee--ecCCChhHHHHhhhhhc
Q 029453 157 NVNLDNTNVRPLEVFMCSI--VRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 157 ~~~~~~~~~~~~~~~~~Sa--~~~~gi~~~~~~i~~~l 192 (193)
......++.+|+ .++.|++++.+.|.+.+
T Consensus 221 -------g~~~~~iiliSsh~l~~~~~e~L~d~I~~~L 251 (413)
T 1tq4_A 221 -------GIAEPPIFLLSNKNVCHYDFPVLMDKLISDL 251 (413)
T ss_dssp -------TCSSCCEEECCTTCTTSTTHHHHHHHHHHHS
T ss_pred -------CCCCCcEEEEecCcCCccCHHHHHHHHHHhC
Confidence 001236788999 66677999999887654
No 218
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.91 E-value=1.7e-10 Score=88.97 Aligned_cols=123 Identities=15% Similarity=0.153 Sum_probs=70.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC-----Ccc--ccCCCCCcceeEEEeCCeEEEEEEcCChhhhH--------HhHHhh
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDE-----RLV--QHQPTQYPTSEELSIGKIKFKAFDLGGHQMAR--------RVWKDY 84 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~-----~~~--~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~--------~~~~~~ 84 (193)
..+++++|.+|+|||||+|.+.+. ... ...+...........+. .+.++||||..... .....+
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~-~~~liDtPG~~~~~~~~~~l~~~~l~~~ 240 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLES-GATLYDTPGIINHHQMAHFVDARDLKII 240 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECST-TCEEEECCSCCCCSSGGGGSCTTTHHHH
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeCC-CeEEEeCCCcCcHHHHHHHHhHHHHHHH
Confidence 458999999999999999999875 222 22222222222333332 37899999943211 112222
Q ss_pred h--ccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC----HHHHHHhhCC
Q 029453 85 Y--AKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAAS----EDELRYHMGL 148 (193)
Q Consensus 85 ~--~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~----~~~~~~~~~~ 148 (193)
+ +..+.++++++....-.+.++.. +......+.|+++++||.|...... .+.+.+.++.
T Consensus 241 ~~~~~i~~~~~~l~~~~~~~~g~l~~-----l~~l~~~~~~~~~v~~k~d~~~~~~~~~~~~~~~~~~g~ 305 (369)
T 3ec1_A 241 TPKREIHPRVYQLNEGQTLFFGGLAR-----LDYIKGGRRSFVCYMANELTVHRTKLEKADSLYANQLGE 305 (369)
T ss_dssp SCSSCCCCEEEEECTTEEEEETTTEE-----EEEEESSSEEEEEEECTTSCEEEEEGGGHHHHHHHHBTT
T ss_pred hcccccCceEEEEcCCceEEECCEEE-----EEEccCCCceEEEEecCCcccccccHHHHHHHHHHhcCC
Confidence 2 56899999999842210111111 1111224689999999999863222 2235555554
No 219
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.86 E-value=6.3e-09 Score=80.22 Aligned_cols=101 Identities=19% Similarity=0.257 Sum_probs=66.3
Q ss_pred ChhhhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCC-CHHHHHHhhCCCcc
Q 029453 73 GHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAA-SEDELRYHMGLTNF 151 (193)
Q Consensus 73 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~-~~~~~~~~~~~~~~ 151 (193)
.++.|.+.+..+.+.++++++|+|++++. ......+..++ .++|+++|+||+|+.+.. ..+++.+.+....
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~--~~~~~~l~~~~-----~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~- 126 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN--GSWLPGLHRFV-----GNNKVLLVGNKADLIPKSVKHDKVKHWMRYSA- 126 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH--HHCCTTHHHHS-----SSSCEEEEEECGGGSCTTSCHHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc--ccHHHHHHHHh-----CCCcEEEEEEChhcCCcccCHHHHHHHHHHHH-
Confidence 45788888888888999999999999863 22222233332 378999999999997543 2222222111100
Q ss_pred ccCCCcccCCCCCCccEEEEEEeeecCCChhHHHHhhhh
Q 029453 152 TTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQ 190 (193)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~ 190 (193)
.. ......+++.+||++|.|+++++++|.+
T Consensus 127 ~~---------~g~~~~~v~~iSA~~g~gi~~L~~~l~~ 156 (368)
T 3h2y_A 127 KQ---------LGLKPEDVFLISAAKGQGIAELADAIEY 156 (368)
T ss_dssp HH---------TTCCCSEEEECCTTTCTTHHHHHHHHHH
T ss_pred HH---------cCCCcccEEEEeCCCCcCHHHHHhhhhh
Confidence 00 0001237899999999999999999865
No 220
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.84 E-value=8.7e-10 Score=85.01 Aligned_cols=111 Identities=14% Similarity=0.151 Sum_probs=63.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC------cc--ccCCCCCcceeEEEeCCeEEEEEEcCChhhhH--------HhHHh
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDER------LV--QHQPTQYPTSEELSIGKIKFKAFDLGGHQMAR--------RVWKD 83 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~~------~~--~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~--------~~~~~ 83 (193)
..+++++|.+|+|||||+|.+.+.. .. ...+........+.... .+.++||||..... .....
T Consensus 160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~-~~~liDtPG~~~~~~~~~~l~~~~l~~ 238 (368)
T 3h2y_A 160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDE-ESSLYDTPGIINHHQMAHYVGKQSLKL 238 (368)
T ss_dssp TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSS-SCEEEECCCBCCTTSGGGGSCHHHHHH
T ss_pred cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecC-CeEEEeCCCcCcHHHHHHHhhHHHHHH
Confidence 4689999999999999999998752 11 11221112222333332 37899999953211 11122
Q ss_pred h--hccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC
Q 029453 84 Y--YAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYA 136 (193)
Q Consensus 84 ~--~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~ 136 (193)
+ .+..+..+++++....-.+.++.. +......+.|+++++||+|....
T Consensus 239 ~~~~~~i~~~~~~l~~~~~~~~g~l~~-----~d~l~~~~~~~~~v~nk~d~~~~ 288 (368)
T 3h2y_A 239 ITPTKEIKPMVFQLNEEQTLFFSGLAR-----FDYVSGGRRAFTCHFSNRLTIHR 288 (368)
T ss_dssp HSCSSCCCCEEEEECTTEEEEETTTEE-----EEEEESSSEEEEEEECTTSCEEE
T ss_pred hccccccCceEEEEcCCCEEEEcceEE-----EEEecCCCceEEEEecCcccccc
Confidence 2 246788999998842210111110 11111246899999999998743
No 221
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.77 E-value=3.8e-09 Score=82.97 Aligned_cols=160 Identities=18% Similarity=0.136 Sum_probs=87.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC------Ccc--c---c----------------------C-CCCCcc-e--eEE-Ee
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDE------RLV--Q---H----------------------Q-PTQYPT-S--EEL-SI 61 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~------~~~--~---~----------------------~-~t~~~~-~--~~~-~~ 61 (193)
...|+++|++||||||+++.+... +.. . . . .+..+. . ..+ ..
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~ 178 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKF 178 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHh
Confidence 357999999999999999998642 110 0 0 0 111110 0 000 01
Q ss_pred CCeEEEEEEcCChhhhHH----hHHhh--hccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCC-c-EEEEeeCCCC
Q 029453 62 GKIKFKAFDLGGHQMARR----VWKDY--YAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADV-P-FLILGNKIDI 133 (193)
Q Consensus 62 ~~~~~~~~D~~g~~~~~~----~~~~~--~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-p-viiv~nK~Dl 133 (193)
.+.++.++||||...... ..... ...+|.+++|+|+.... ........+ . ... | ..+|+||+|.
T Consensus 179 ~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~---~~~~~~~~~-~----~~~~~i~gvVlnK~D~ 250 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQ---QAGIQAKAF-K----EAVGEIGSIIVTKLDG 250 (432)
T ss_dssp SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGG---GHHHHHHHH-H----TTSCSCEEEEEECSSS
T ss_pred hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccH---HHHHHHHHH-h----hcccCCeEEEEeCCCC
Confidence 567899999999543211 11111 12589999999997653 222222222 2 134 5 8899999998
Q ss_pred CCCCC-HHHHHHhhCCCcc--ccCCCcccCCCCCCccEEEEEEeeecCCC-hhHHHHhhhhh
Q 029453 134 PYAAS-EDELRYHMGLTNF--TTGKGNVNLDNTNVRPLEVFMCSIVRKMG-YGEGFKWLSQY 191 (193)
Q Consensus 134 ~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g-i~~~~~~i~~~ 191 (193)
..... .-.+....+.+.. ..+..... .....+...+|+..|.| +..+++.+.+.
T Consensus 251 ~~~~g~~l~~~~~~~~pi~~ig~Ge~~~d----l~~f~~~~~~s~l~g~gdi~~L~e~~~~~ 308 (432)
T 2v3c_C 251 SAKGGGALSAVAETKAPIKFIGIGEGIDD----LEPFDPKKFISRLLGMGDLESLLEKAEDM 308 (432)
T ss_dssp CSTTHHHHHHHHHSSCCEEEECCSSSSSS----CCBCCHHHHHHHHTCSSCSSTTSSTTTSC
T ss_pred ccchHHHHHHHHHHCCCEEEeecCccccc----cccCCHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 63221 2234444443321 11111111 11223445788999999 88888877654
No 222
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.76 E-value=1e-08 Score=79.13 Aligned_cols=102 Identities=20% Similarity=0.257 Sum_probs=66.6
Q ss_pred ChhhhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC-HHHHHHhhCCCcc
Q 029453 73 GHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAAS-EDELRYHMGLTNF 151 (193)
Q Consensus 73 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~-~~~~~~~~~~~~~ 151 (193)
.++.|.+...++.+.++++++|+|++++.+ .....+...+ .+.|+++|+||+|+.+... .+.+.+.+....
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~--s~~~~l~~~l-----~~~piilV~NK~DLl~~~~~~~~~~~~l~~~~- 128 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG--SFIPGLPRFA-----ADNPILLVGNKADLLPRSVKYPKLLRWMRRMA- 128 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG--GCCSSHHHHC-----TTSCEEEEEECGGGSCTTCCHHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC--chhhHHHHHh-----CCCCEEEEEEChhcCCCccCHHHHHHHHHHHH-
Confidence 477888888888899999999999998752 2222222332 3789999999999975432 222222211100
Q ss_pred ccCCCcccCCCCCCccEEEEEEeeecCCChhHHHHhhhhh
Q 029453 152 TTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQY 191 (193)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~ 191 (193)
+. ......+++.+||++|.|++++++.|.+.
T Consensus 129 ~~---------~g~~~~~v~~iSA~~g~gi~~L~~~I~~~ 159 (369)
T 3ec1_A 129 EE---------LGLCPVDVCLVSAAKGIGMAKVMEAINRY 159 (369)
T ss_dssp HT---------TTCCCSEEEECBTTTTBTHHHHHHHHHHH
T ss_pred HH---------cCCCcccEEEEECCCCCCHHHHHHHHHhh
Confidence 00 00112478999999999999999998653
No 223
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.63 E-value=5e-08 Score=72.54 Aligned_cols=56 Identities=20% Similarity=0.330 Sum_probs=37.6
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccccCC----CCCcceeEEEeCCeEEEEEEcCChh
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQP----TQYPTSEELSIGKIKFKAFDLGGHQ 75 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~D~~g~~ 75 (193)
....++++++|.+|+|||||+|++.+.....+.+ |...+ .+.. +..+.++||||..
T Consensus 117 ~~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~--~~~~-~~~~~l~DtpG~~ 176 (282)
T 1puj_A 117 KPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQ--WVKV-GKELELLDTPGIL 176 (282)
T ss_dssp CCCCEEEEEEESTTSSHHHHHHHHHTSCCC------------C--CEEE-TTTEEEEECCCCC
T ss_pred CCCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeE--EEEe-CCCEEEEECcCcC
Confidence 4567899999999999999999999877543322 22222 2333 3368899999953
No 224
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.61 E-value=1e-08 Score=75.47 Aligned_cols=54 Identities=28% Similarity=0.374 Sum_probs=34.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcc--eeEEEeCCeEEEEEEcCChh
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPT--SEELSIGKIKFKAFDLGGHQ 75 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~--~~~~~~~~~~~~~~D~~g~~ 75 (193)
++++++|.+|+|||||+|++.+.......++.+.+ ...+.. +..+.+|||||..
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~-~~~~~l~DtpG~~ 155 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFSL-ENGVKILDTPGIL 155 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----------CCSCEEEC-TTSCEEESSCEEC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceEEEEe-CCCEEEEECCCcc
Confidence 69999999999999999999987764433322211 122232 3467899999954
No 225
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.59 E-value=5.8e-08 Score=79.52 Aligned_cols=25 Identities=28% Similarity=0.393 Sum_probs=22.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
-..++|+|++|||||||++.+.+-.
T Consensus 45 lp~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 45 LPAIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CCCEECCCCTTSCHHHHHHHHHSCC
T ss_pred CCeEEEECCCCChHHHHHHHHhCCC
Confidence 3469999999999999999998764
No 226
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.54 E-value=9.6e-07 Score=69.29 Aligned_cols=109 Identities=20% Similarity=0.167 Sum_probs=62.1
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc------CCcc-ccCCCCCc-------------ceeEE-------------------
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKD------ERLV-QHQPTQYP-------------TSEEL------------------- 59 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~------~~~~-~~~~t~~~-------------~~~~~------------------- 59 (193)
+...|+++|++||||||++..+.. .+.. ....+..+ ....+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 467899999999999999998852 2211 00000000 00000
Q ss_pred EeCCeEEEEEEcCChhhh----HHhHH--hhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCC
Q 029453 60 SIGKIKFKAFDLGGHQMA----RRVWK--DYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDI 133 (193)
Q Consensus 60 ~~~~~~~~~~D~~g~~~~----~~~~~--~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl 133 (193)
...+.++.++||+|.... ..... .....+|.+++|+|+...... ......+... -.+..+|+||.|.
T Consensus 179 ~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a---~~~a~~f~~~----~~i~gVIlTKlD~ 251 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQA---YNQALAFKEA----TPIGSIIVTKLDG 251 (443)
T ss_dssp HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGH---HHHHHHHHHS----CTTEEEEEECCSS
T ss_pred HhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhH---HHHHHHHHhh----CCCeEEEEECCCC
Confidence 013478999999993211 11111 112357999999999875322 2223333221 2456789999998
Q ss_pred C
Q 029453 134 P 134 (193)
Q Consensus 134 ~ 134 (193)
.
T Consensus 252 ~ 252 (443)
T 3dm5_A 252 S 252 (443)
T ss_dssp C
T ss_pred c
Confidence 6
No 227
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.50 E-value=1.1e-08 Score=75.30 Aligned_cols=94 Identities=21% Similarity=0.074 Sum_probs=59.6
Q ss_pred cCChhhh-HHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCC
Q 029453 71 LGGHQMA-RRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLT 149 (193)
Q Consensus 71 ~~g~~~~-~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~ 149 (193)
.|||... .......+.++|+++.|+|+.++.+.... .+. ++ ++|.++|+||+|+.+....+++.+.+...
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~--~l~-ll------~k~~iivlNK~DL~~~~~~~~~~~~~~~~ 74 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAY--GVD-FS------RKETIILLNKVDIADEKTTKKWVEFFKKQ 74 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCT--TSC-CT------TSEEEEEEECGGGSCHHHHHHHHHHHHHT
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcCh--HHH-hc------CCCcEEEEECccCCCHHHHHHHHHHHHHc
Confidence 5777632 33556678999999999999987543221 111 11 78999999999997532223333333211
Q ss_pred ccccCCCcccCCCCCCccEEEEEEeeecCCChhHHHHhhhhh
Q 029453 150 NFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQY 191 (193)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~ 191 (193)
..++ .+||+++.|+++++++|.+.
T Consensus 75 -----------------g~~v-~iSa~~~~gi~~L~~~l~~~ 98 (262)
T 3cnl_A 75 -----------------GKRV-ITTHKGEPRKVLLKKLSFDR 98 (262)
T ss_dssp -----------------TCCE-EECCTTSCHHHHHHHHCCCT
T ss_pred -----------------CCeE-EEECCCCcCHHHHHHHHHHh
Confidence 1245 89999999999999988664
No 228
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.47 E-value=3.5e-07 Score=74.25 Aligned_cols=60 Identities=20% Similarity=0.144 Sum_probs=42.1
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHHhcCCcc-ccCCC-CCcceeEEE-------eCCeEEEEEEcCChh
Q 029453 16 LWQKEAKILFLGLDNSGKTTLLHMLKDERLV-QHQPT-QYPTSEELS-------IGKIKFKAFDLGGHQ 75 (193)
Q Consensus 16 ~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~-~~~~t-~~~~~~~~~-------~~~~~~~~~D~~g~~ 75 (193)
...+..+|+|+|.+|+|||||+|++.+.... ....| ...+..... ..+..+.++||||..
T Consensus 34 i~~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~ 102 (592)
T 1f5n_A 34 ITQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLG 102 (592)
T ss_dssp CCSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBC
T ss_pred ccCCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcC
Confidence 3567789999999999999999999987643 22222 233333322 245789999999954
No 229
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.25 E-value=4.4e-07 Score=68.03 Aligned_cols=87 Identities=13% Similarity=0.084 Sum_probs=56.4
Q ss_pred hhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC----HHHHHHhhCCCccccCCCcc
Q 029453 83 DYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAAS----EDELRYHMGLTNFTTGKGNV 158 (193)
Q Consensus 83 ~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~----~~~~~~~~~~~~~~~~~~~~ 158 (193)
....++|.+++|+|+.++..-......+...... .++|.++|+||+||.+... .+++.+.+...
T Consensus 82 ~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~---~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~--------- 149 (307)
T 1t9h_A 82 PPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA---NDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNI--------- 149 (307)
T ss_dssp TTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT---TTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHH---------
T ss_pred HHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECCccCchhhhHHHHHHHHHHHHhC---------
Confidence 3578899999999998764333222222222222 4789999999999975432 23344433211
Q ss_pred cCCCCCCccEEEEEEeeecCCChhHHHHhhh
Q 029453 159 NLDNTNVRPLEVFMCSIVRKMGYGEGFKWLS 189 (193)
Q Consensus 159 ~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~ 189 (193)
..+++.+||.++.|++++++.+.
T Consensus 150 --------g~~v~~~sa~~~~g~~~L~~~~~ 172 (307)
T 1t9h_A 150 --------GYDVYLTSSKDQDSLADIIPHFQ 172 (307)
T ss_dssp --------TCCEEECCHHHHTTCTTTGGGGT
T ss_pred --------CCeEEEEecCCCCCHHHHHhhcC
Confidence 13678899999999988887654
No 230
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.16 E-value=3.4e-06 Score=66.14 Aligned_cols=109 Identities=18% Similarity=0.114 Sum_probs=61.2
Q ss_pred cccEEEEEcCCCCCHHHHHHHHh------cCCccc-cCCCC---------------Cccee-----------------EE
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLK------DERLVQ-HQPTQ---------------YPTSE-----------------EL 59 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~------~~~~~~-~~~t~---------------~~~~~-----------------~~ 59 (193)
+...|+++|++||||||++..+. +.+..- ...+. +.... ..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 35688999999999999999885 221100 00000 00000 00
Q ss_pred EeCCeEEEEEEcCChhh------hHHhHHhh--hccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCC
Q 029453 60 SIGKIKFKAFDLGGHQM------ARRVWKDY--YAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKI 131 (193)
Q Consensus 60 ~~~~~~~~~~D~~g~~~------~~~~~~~~--~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~ 131 (193)
...+.++.++||||... ........ .-.++.+++|+|+............+... -.+..+++||.
T Consensus 176 ~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~~f~~~-------~~~~gVIlTKl 248 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLASRFHQA-------SPIGSVIITKM 248 (433)
T ss_dssp TTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHHHHHHH-------CSSEEEEEECG
T ss_pred HhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHHHHHhcc-------cCCcEEEEecc
Confidence 01257888999999432 11111111 12468999999998753322222222222 24578899999
Q ss_pred CCC
Q 029453 132 DIP 134 (193)
Q Consensus 132 Dl~ 134 (193)
|..
T Consensus 249 D~~ 251 (433)
T 3kl4_A 249 DGT 251 (433)
T ss_dssp GGC
T ss_pred ccc
Confidence 985
No 231
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.98 E-value=4.8e-05 Score=56.85 Aligned_cols=65 Identities=18% Similarity=0.106 Sum_probs=40.2
Q ss_pred CCeEEEEEEcCChhh--hHH-hHH-----hhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCc-EEEEeeCCC
Q 029453 62 GKIKFKAFDLGGHQM--ARR-VWK-----DYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVP-FLILGNKID 132 (193)
Q Consensus 62 ~~~~~~~~D~~g~~~--~~~-~~~-----~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-viiv~nK~D 132 (193)
.+.++.++||||... ... ... .....+|.+++|+|+.... ........+. . ..| ..+|+||+|
T Consensus 179 ~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~---~~~~~~~~~~-~----~~~i~gvVlnk~D 250 (297)
T 1j8m_F 179 EKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQ---KAYDLASKFN-Q----ASKIGTIIITKMD 250 (297)
T ss_dssp TTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGG---GHHHHHHHHH-H----TCTTEEEEEECGG
T ss_pred CCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchH---HHHHHHHHHH-h----hCCCCEEEEeCCC
Confidence 457899999999655 221 111 1234689999999987542 2222233332 1 345 678899999
Q ss_pred CC
Q 029453 133 IP 134 (193)
Q Consensus 133 l~ 134 (193)
..
T Consensus 251 ~~ 252 (297)
T 1j8m_F 251 GT 252 (297)
T ss_dssp GC
T ss_pred CC
Confidence 75
No 232
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.86 E-value=0.00021 Score=56.24 Aligned_cols=27 Identities=15% Similarity=0.151 Sum_probs=23.4
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcC
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDE 43 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~ 43 (193)
..+-.-|+|+|++++|||+|+|.+++.
T Consensus 64 ~~~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 64 DKEVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp TSBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCceEEEEEECCCCCcHHHHHHHHhhh
Confidence 456678999999999999999999863
No 233
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.77 E-value=3.5e-05 Score=58.91 Aligned_cols=83 Identities=23% Similarity=0.077 Sum_probs=50.8
Q ss_pred hccCCEEEEEEeCCChhhH-HHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC---HHHHHHhhCCCccccCCCcccC
Q 029453 85 YAKVDAVVYLIDAYDKERF-SESKRELDALLSDEALADVPFLILGNKIDIPYAAS---EDELRYHMGLTNFTTGKGNVNL 160 (193)
Q Consensus 85 ~~~~d~ii~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 160 (193)
..++|.+++|... +|..- ..+..++...-. .++|.++|+||+||.+... .+++...+...
T Consensus 128 ~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~~----~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~----------- 191 (358)
T 2rcn_A 128 AANIDQIVIVSAI-LPELSLNIIDRYLVGCET----LQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNI----------- 191 (358)
T ss_dssp EECCCEEEEEEES-TTTCCHHHHHHHHHHHHH----HTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTT-----------
T ss_pred HhcCCEEEEEEeC-CCCCCHHHHHHHHHHHHh----cCCCEEEEEECccCCCchhHHHHHHHHHHHHhC-----------
Confidence 5689999987554 45322 223333322211 3788899999999975432 11233332211
Q ss_pred CCCCCccEEEEEEeeecCCChhHHHHhhh
Q 029453 161 DNTNVRPLEVFMCSIVRKMGYGEGFKWLS 189 (193)
Q Consensus 161 ~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~ 189 (193)
..+++.+||.++.|++++...+.
T Consensus 192 ------G~~v~~~Sa~~~~gl~~L~~~~~ 214 (358)
T 2rcn_A 192 ------GYRVLMVSSHTQDGLKPLEEALT 214 (358)
T ss_dssp ------TCCEEECBTTTTBTHHHHHHHHT
T ss_pred ------CCcEEEEecCCCcCHHHHHHhcC
Confidence 13588999999999999887653
No 234
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.75 E-value=1.6e-05 Score=54.87 Aligned_cols=22 Identities=36% Similarity=0.549 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 029453 22 KILFLGLDNSGKTTLLHMLKDE 43 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~ 43 (193)
+++++|++|||||||++.+.+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7899999999999999998654
No 235
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.74 E-value=7e-05 Score=58.87 Aligned_cols=122 Identities=17% Similarity=0.191 Sum_probs=66.1
Q ss_pred cccEEEEEcCCCCCHHHHHHHHh-------cCCcc-----ccCCCC-----------C---------ccee--------E
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLK-------DERLV-----QHQPTQ-----------Y---------PTSE--------E 58 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~-------~~~~~-----~~~~t~-----------~---------~~~~--------~ 58 (193)
+...|+++|.+|+||||++..+. +.+.. ...+.. + .... .
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~ 178 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKE 178 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHH
Confidence 34578899999999999998885 22211 000000 0 0000 0
Q ss_pred EEeCCeEEEEEEcCChhhhH-HhHH-----hhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCc-EEEEeeCC
Q 029453 59 LSIGKIKFKAFDLGGHQMAR-RVWK-----DYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVP-FLILGNKI 131 (193)
Q Consensus 59 ~~~~~~~~~~~D~~g~~~~~-~~~~-----~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-viiv~nK~ 131 (193)
....++++.++||||..... .... ...-.++.+++|+|+...... ......+-. ..+ .-+|+||+
T Consensus 179 ~~~~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~---~~~~~~f~~-----~l~i~gvVlnK~ 250 (433)
T 2xxa_A 179 AKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDA---ANTAKAFNE-----ALPLTGVVLTKV 250 (433)
T ss_dssp HHHTTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTH---HHHHHHHHH-----HSCCCCEEEECT
T ss_pred HHhCCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHH---HHHHHHHhc-----cCCCeEEEEecC
Confidence 11146789999999954321 1111 123468999999999755322 222222211 233 34689999
Q ss_pred CCCCCC-CHHHHHHhhCC
Q 029453 132 DIPYAA-SEDELRYHMGL 148 (193)
Q Consensus 132 Dl~~~~-~~~~~~~~~~~ 148 (193)
|..... ....+....+.
T Consensus 251 D~~~~~g~~l~i~~~~~~ 268 (433)
T 2xxa_A 251 DGDARGGAALSIRHITGK 268 (433)
T ss_dssp TSSSCCTHHHHHHHHHCC
T ss_pred CCCccHHHHHHHHHHHCC
Confidence 986332 22234444443
No 236
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=97.73 E-value=4.7e-06 Score=66.26 Aligned_cols=85 Identities=18% Similarity=0.171 Sum_probs=48.3
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcce----eEEEeCCeEEEEEEcCChhh--hHHhH--------H
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTS----EELSIGKIKFKAFDLGGHQM--ARRVW--------K 82 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~----~~~~~~~~~~~~~D~~g~~~--~~~~~--------~ 82 (193)
...+..|+++|.+||||||+.+++.........++..... ...........+||..|.+. ....+ .
T Consensus 36 ~~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~ 115 (469)
T 1bif_A 36 TNCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVR 115 (469)
T ss_dssp --CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3466799999999999999999986432111111111000 00000112335788888732 22222 3
Q ss_pred hhhccCCEEEEEEeCCChh
Q 029453 83 DYYAKVDAVVYLIDAYDKE 101 (193)
Q Consensus 83 ~~~~~~d~ii~v~d~~~~~ 101 (193)
.++....+.++|+|.++..
T Consensus 116 ~~l~~~~G~~vV~D~tn~~ 134 (469)
T 1bif_A 116 KFLSEEGGHVAVFDATNTT 134 (469)
T ss_dssp HHHHTTCCSEEEEESCCCS
T ss_pred HHHHhCCCCEEEEeCCCCC
Confidence 4455567888999999873
No 237
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.65 E-value=6.3e-05 Score=54.26 Aligned_cols=25 Identities=24% Similarity=0.372 Sum_probs=21.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
.=.++++|++|||||||++.+.+-.
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3368999999999999999998754
No 238
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.60 E-value=3.2e-05 Score=53.36 Aligned_cols=23 Identities=17% Similarity=0.417 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDE 43 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~ 43 (193)
-.++++|++|||||||++.+.+.
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 47899999999999999999764
No 239
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.60 E-value=3.2e-05 Score=54.29 Aligned_cols=22 Identities=32% Similarity=0.493 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 029453 21 AKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~ 42 (193)
-.++|+|++|||||||++.+.+
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4689999999999999999875
No 240
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.60 E-value=9.6e-05 Score=52.15 Aligned_cols=27 Identities=26% Similarity=0.261 Sum_probs=23.3
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcC
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDE 43 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~ 43 (193)
..+...|+|+|++|||||||++.+.+-
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 356779999999999999999998653
No 241
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.59 E-value=8.8e-05 Score=53.10 Aligned_cols=24 Identities=33% Similarity=0.389 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
-.++++|++|||||||++.+.+-.
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999998754
No 242
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.56 E-value=0.00011 Score=53.25 Aligned_cols=24 Identities=21% Similarity=0.396 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
=.++++|++|||||||++.+.+-.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999998754
No 243
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.56 E-value=0.0001 Score=54.44 Aligned_cols=24 Identities=25% Similarity=0.308 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
=.++++|++|||||||++.+.+-.
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHHcCC
Confidence 368999999999999999998754
No 244
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.54 E-value=0.00011 Score=53.86 Aligned_cols=24 Identities=29% Similarity=0.383 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
=.++++|++|||||||++.+.+-.
T Consensus 33 e~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999998754
No 245
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.54 E-value=4.1e-05 Score=54.00 Aligned_cols=27 Identities=19% Similarity=0.345 Sum_probs=21.9
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
.+.--++++|++|||||||++.+.+-.
T Consensus 18 ~~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 344578999999999999999987643
No 246
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.54 E-value=4.2e-05 Score=53.61 Aligned_cols=24 Identities=21% Similarity=0.318 Sum_probs=20.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDE 43 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~ 43 (193)
.--++++|++||||||+++.+.+.
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 346899999999999999998764
No 247
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.53 E-value=4.2e-05 Score=53.01 Aligned_cols=22 Identities=41% Similarity=0.543 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 029453 22 KILFLGLDNSGKTTLLHMLKDE 43 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~ 43 (193)
-++++|++||||||+++.+.+.
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 3789999999999999999754
No 248
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.51 E-value=4.5e-05 Score=52.18 Aligned_cols=21 Identities=24% Similarity=0.396 Sum_probs=18.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHh
Q 029453 21 AKILFLGLDNSGKTTLLHMLK 41 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~ 41 (193)
--++++|++|||||||++.+.
T Consensus 10 ei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEEECCTTSCHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHc
Confidence 368999999999999999754
No 249
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.51 E-value=0.00013 Score=53.39 Aligned_cols=25 Identities=28% Similarity=0.452 Sum_probs=21.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
.-.++++|++|||||||++.+.+-.
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3468999999999999999998754
No 250
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.50 E-value=6.9e-05 Score=51.92 Aligned_cols=26 Identities=27% Similarity=0.328 Sum_probs=22.4
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcC
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDE 43 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~ 43 (193)
.+.-.++++|++||||||+++.+.+.
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhc
Confidence 34557999999999999999999875
No 251
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.50 E-value=0.00013 Score=52.71 Aligned_cols=24 Identities=25% Similarity=0.386 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
=.++++|++|||||||++.+.+-.
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999998754
No 252
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.49 E-value=0.00018 Score=51.14 Aligned_cols=23 Identities=35% Similarity=0.427 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 029453 22 KILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
.++++|++|||||||++.+.+-.
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999998754
No 253
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.49 E-value=5.3e-05 Score=53.98 Aligned_cols=25 Identities=28% Similarity=0.381 Sum_probs=21.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcC
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDE 43 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~ 43 (193)
+.-.++|+|++|||||||++.+.+.
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4457899999999999999998764
No 254
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.48 E-value=0.00019 Score=52.19 Aligned_cols=24 Identities=29% Similarity=0.368 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
=.++++|++|||||||++.+.+-.
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999998754
No 255
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.48 E-value=0.00013 Score=53.44 Aligned_cols=25 Identities=28% Similarity=0.409 Sum_probs=21.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
.=.++++|++|||||||++.+.+-.
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 3468999999999999999998754
No 256
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.46 E-value=6.3e-05 Score=53.69 Aligned_cols=25 Identities=16% Similarity=0.294 Sum_probs=21.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
.--++|+||+|||||||++.+.+..
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHhccC
Confidence 3478999999999999999987643
No 257
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.46 E-value=0.00015 Score=53.29 Aligned_cols=24 Identities=29% Similarity=0.512 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
=.++++|++|||||||++.+.+-.
T Consensus 38 e~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 368999999999999999998754
No 258
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=97.45 E-value=0.0002 Score=54.73 Aligned_cols=24 Identities=33% Similarity=0.495 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
=-++++|++|||||||++.+.+-.
T Consensus 31 e~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCchHHHHHHHHhcCC
Confidence 368999999999999999998754
No 259
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.45 E-value=7.4e-05 Score=52.70 Aligned_cols=25 Identities=40% Similarity=0.313 Sum_probs=21.4
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhc
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
.+...|+++|++||||||+++.+.+
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3556899999999999999999865
No 260
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.44 E-value=0.00021 Score=52.22 Aligned_cols=25 Identities=24% Similarity=0.332 Sum_probs=21.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
.=.++++|++|||||||++.+.+-.
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3368999999999999999998754
No 261
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.43 E-value=7.5e-05 Score=50.47 Aligned_cols=27 Identities=26% Similarity=0.223 Sum_probs=22.8
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
.+.-.++++|+.|||||||++.+.+..
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 344479999999999999999998755
No 262
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.41 E-value=0.00026 Score=52.19 Aligned_cols=24 Identities=25% Similarity=0.397 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
-.++|+|++|||||||++.+.+-.
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999998754
No 263
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=97.40 E-value=0.00021 Score=52.51 Aligned_cols=24 Identities=33% Similarity=0.430 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
=.++++|++|||||||++.+.+-.
T Consensus 34 e~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 368999999999999999998754
No 264
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.38 E-value=0.00011 Score=51.54 Aligned_cols=24 Identities=33% Similarity=0.606 Sum_probs=21.1
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
+...|+++|++||||||+++.+.+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999864
No 265
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.37 E-value=0.00011 Score=53.15 Aligned_cols=25 Identities=32% Similarity=0.392 Sum_probs=21.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
.-.++++|++|||||||++.+.+-.
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3478999999999999999998754
No 266
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.36 E-value=0.00014 Score=49.94 Aligned_cols=38 Identities=16% Similarity=0.121 Sum_probs=26.5
Q ss_pred HHHHHHHHHhCCCCcccEEEEEcCCCCCHHHHHHHHhcC
Q 029453 5 DWFYGILVSLGLWQKEAKILFLGLDNSGKTTLLHMLKDE 43 (193)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~i~i~G~~~~GKssl~~~l~~~ 43 (193)
..+..+..+... .+.-.+++.|++|+|||||++.+.+.
T Consensus 24 ~~~~~~~~~~~~-~~g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 24 LTIRVFVHNFNP-EEGKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp HHHHHHHHSCCG-GGCCEEEECCSSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHhccc-cCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 344444443322 23567999999999999999998653
No 267
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=97.36 E-value=0.00014 Score=54.53 Aligned_cols=25 Identities=24% Similarity=0.394 Sum_probs=21.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
.-.++|+|++|||||||++.+.+-.
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred CCEEEEECCCCchHHHHHHHHHcCC
Confidence 3479999999999999999988643
No 268
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=97.36 E-value=0.00035 Score=53.82 Aligned_cols=23 Identities=35% Similarity=0.520 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 029453 22 KILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
.++++|++|||||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCcHHHHHHHHHHcCC
Confidence 58999999999999999998754
No 269
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.35 E-value=0.0001 Score=51.60 Aligned_cols=25 Identities=12% Similarity=0.395 Sum_probs=21.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcC
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDE 43 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~ 43 (193)
+.--|+|+||+|||||||++.+...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhh
Confidence 4457899999999999999999754
No 270
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.35 E-value=0.00013 Score=52.86 Aligned_cols=23 Identities=30% Similarity=0.400 Sum_probs=21.0
Q ss_pred cccEEEEEcCCCCCHHHHHHHHh
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLK 41 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~ 41 (193)
+...|+|+|++||||||+++.+.
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 35689999999999999999998
No 271
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=97.35 E-value=0.00026 Score=54.24 Aligned_cols=24 Identities=21% Similarity=0.271 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
=-++++|++|||||||++.+.+-.
T Consensus 55 ei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 55 QIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEEcCCCchHHHHHHHHhcCC
Confidence 368999999999999999998754
No 272
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.35 E-value=0.00012 Score=53.11 Aligned_cols=25 Identities=28% Similarity=0.461 Sum_probs=21.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
.-.++++|++|||||||++.+.+-.
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3478999999999999999997654
No 273
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.35 E-value=0.00011 Score=50.12 Aligned_cols=22 Identities=27% Similarity=0.442 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 029453 21 AKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~ 42 (193)
..|+++|++||||||+++.+.+
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999875
No 274
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.34 E-value=0.0001 Score=52.01 Aligned_cols=26 Identities=19% Similarity=0.256 Sum_probs=22.0
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
+.--|+++||+||||||+++.+....
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 44569999999999999999997653
No 275
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.34 E-value=0.00012 Score=52.55 Aligned_cols=24 Identities=33% Similarity=0.444 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
-.++++|++|||||||++.+.+-.
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999998754
No 276
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.33 E-value=0.00013 Score=51.07 Aligned_cols=26 Identities=23% Similarity=0.293 Sum_probs=22.1
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
+...++++|++||||||+++.+.+..
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 34579999999999999999987644
No 277
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.32 E-value=0.0001 Score=52.20 Aligned_cols=24 Identities=29% Similarity=0.243 Sum_probs=21.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDE 43 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~ 43 (193)
.-.++++|++|||||||++.+.+-
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 346899999999999999999875
No 278
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=97.32 E-value=0.00029 Score=54.28 Aligned_cols=24 Identities=33% Similarity=0.591 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
=-++++|++|||||||++.+.+-.
T Consensus 30 e~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 30 EFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEEcCCCchHHHHHHHHHcCC
Confidence 368999999999999999998754
No 279
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=97.31 E-value=0.0003 Score=53.78 Aligned_cols=24 Identities=33% Similarity=0.498 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
=.++++|++|||||||++.+.+-.
T Consensus 42 e~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 42 EMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 368999999999999999998754
No 280
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=97.31 E-value=0.0003 Score=53.85 Aligned_cols=24 Identities=38% Similarity=0.404 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
=.++++|++|||||||++.+.+-.
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 30 EFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEEcCCCchHHHHHHHHHCCC
Confidence 368999999999999999998754
No 281
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.31 E-value=0.00013 Score=53.15 Aligned_cols=23 Identities=26% Similarity=0.445 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDE 43 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~ 43 (193)
=.++++|++|||||||++.+.+-
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999985
No 282
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=97.30 E-value=0.00032 Score=53.80 Aligned_cols=24 Identities=33% Similarity=0.396 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
=.++++|++|||||||++.+.+-.
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 30 EFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCchHHHHHHHHhcCC
Confidence 368999999999999999998754
No 283
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.30 E-value=0.00011 Score=51.09 Aligned_cols=22 Identities=32% Similarity=0.536 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 029453 22 KILFLGLDNSGKTTLLHMLKDE 43 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~ 43 (193)
+++++|++|||||||++.+.+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 5899999999999999998753
No 284
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.30 E-value=0.00014 Score=52.88 Aligned_cols=24 Identities=25% Similarity=0.421 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
-.++++|++|||||||++.+.+-.
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 368999999999999999998754
No 285
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.30 E-value=0.00012 Score=50.61 Aligned_cols=21 Identities=24% Similarity=0.260 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 029453 22 KILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~ 42 (193)
.++++|++||||||+++.+.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 578999999999999999975
No 286
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=97.30 E-value=0.00014 Score=53.81 Aligned_cols=24 Identities=42% Similarity=0.679 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
=.++++|++|||||||++.+.+-.
T Consensus 48 e~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 368999999999999999998654
No 287
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.29 E-value=0.00014 Score=53.24 Aligned_cols=25 Identities=24% Similarity=0.313 Sum_probs=21.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
.-.++++|++|||||||++.+.+-.
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhccC
Confidence 3478999999999999999998753
No 288
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.29 E-value=0.00015 Score=53.24 Aligned_cols=24 Identities=29% Similarity=0.354 Sum_probs=21.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDE 43 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~ 43 (193)
.=.++++|++|||||||++.+.+-
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 346899999999999999999985
No 289
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.28 E-value=0.00016 Score=49.06 Aligned_cols=20 Identities=35% Similarity=0.605 Sum_probs=18.6
Q ss_pred cEEEEEcCCCCCHHHHHHHH
Q 029453 21 AKILFLGLDNSGKTTLLHML 40 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l 40 (193)
..|++.|++||||||+.+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999998
No 290
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.27 E-value=0.00017 Score=51.35 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=20.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
...|+++|++||||||+++.+.+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999864
No 291
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.27 E-value=0.00016 Score=55.31 Aligned_cols=25 Identities=28% Similarity=0.375 Sum_probs=22.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCc
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERL 45 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~ 45 (193)
-.++++|++|||||||+|.+.+...
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CEEEEECCCCccHHHHHHHHhcccc
Confidence 4799999999999999999997654
No 292
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=97.27 E-value=0.00037 Score=53.65 Aligned_cols=24 Identities=33% Similarity=0.488 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
=.++++|++|||||||++.+.+-.
T Consensus 38 e~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 38 EFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCChHHHHHHHHHcCC
Confidence 368999999999999999998754
No 293
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=97.26 E-value=0.00017 Score=52.64 Aligned_cols=23 Identities=35% Similarity=0.525 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 029453 22 KILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
.++++|++|||||||++.+.+-.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998754
No 294
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.25 E-value=0.00023 Score=49.98 Aligned_cols=27 Identities=41% Similarity=0.374 Sum_probs=23.4
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcC
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDE 43 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~ 43 (193)
..+...|+++|++||||||+++.+.+.
T Consensus 18 ~~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 18 GSKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp SCCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 445678999999999999999999764
No 295
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.25 E-value=0.00018 Score=54.04 Aligned_cols=26 Identities=23% Similarity=0.119 Sum_probs=23.1
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhc
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
..+..-|+|+|++|||||||++.+.+
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHh
Confidence 45677999999999999999999865
No 296
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.25 E-value=0.00045 Score=51.39 Aligned_cols=25 Identities=24% Similarity=0.162 Sum_probs=22.1
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHh
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLK 41 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~ 41 (193)
..+...|+|+|++|||||||++.+.
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~ 52 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIY 52 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHH
Confidence 4567899999999999999999875
No 297
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.25 E-value=0.00016 Score=54.19 Aligned_cols=25 Identities=32% Similarity=0.490 Sum_probs=21.6
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhc
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
.+.-.++|+|++|||||||++.+.+
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhh
Confidence 3556899999999999999999864
No 298
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.24 E-value=0.00018 Score=50.41 Aligned_cols=22 Identities=27% Similarity=0.459 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 029453 21 AKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~ 42 (193)
.+|+|+|++||||||+++.+.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999876
No 299
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.23 E-value=0.00019 Score=51.95 Aligned_cols=24 Identities=25% Similarity=0.234 Sum_probs=21.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
+...|+|+|++||||||+++.+.+
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 556899999999999999999865
No 300
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=97.23 E-value=0.00032 Score=49.30 Aligned_cols=22 Identities=23% Similarity=0.318 Sum_probs=18.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 029453 21 AKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~ 42 (193)
-.+++.||||+|||+++..+..
T Consensus 59 n~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3599999999999999888754
No 301
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.23 E-value=0.00055 Score=53.59 Aligned_cols=66 Identities=15% Similarity=0.036 Sum_probs=37.0
Q ss_pred CCeEEEEEEcCChhhhH-HhHH-----hhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC
Q 029453 62 GKIKFKAFDLGGHQMAR-RVWK-----DYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIP 134 (193)
Q Consensus 62 ~~~~~~~~D~~g~~~~~-~~~~-----~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~ 134 (193)
.++++.++||||..... .... ...-.++.+++|+|+... +........+... -...-+|+||.|..
T Consensus 179 ~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tg---q~av~~a~~f~~~----l~i~GVIlTKlD~~ 250 (425)
T 2ffh_A 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG---QEALSVARAFDEK----VGVTGLVLTKLDGD 250 (425)
T ss_dssp TTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT---THHHHHHHHHHHH----TCCCEEEEESGGGC
T ss_pred CCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccch---HHHHHHHHHHHhc----CCceEEEEeCcCCc
Confidence 45689999999853221 1111 112258899999998644 2222233333211 11256788999975
No 302
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=97.22 E-value=0.00028 Score=53.94 Aligned_cols=24 Identities=25% Similarity=0.455 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
=.++++|++|||||||++.+.+-.
T Consensus 32 e~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 32 ERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 368999999999999999998754
No 303
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=97.22 E-value=0.0002 Score=52.57 Aligned_cols=24 Identities=42% Similarity=0.610 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
-.++++|++|||||||++.+.+-.
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999998754
No 304
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.22 E-value=0.00025 Score=49.60 Aligned_cols=27 Identities=26% Similarity=0.336 Sum_probs=22.8
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHHhc
Q 029453 16 LWQKEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 16 ~~~~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
.......|++.|++||||||+.+.+..
T Consensus 16 ~~~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 16 PRGSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CCCSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 345667899999999999999999853
No 305
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.22 E-value=0.00022 Score=48.71 Aligned_cols=24 Identities=17% Similarity=0.383 Sum_probs=20.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
+...|+++|++||||||+++.+.+
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 345799999999999999998864
No 306
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=97.21 E-value=0.0024 Score=44.50 Aligned_cols=68 Identities=13% Similarity=0.027 Sum_probs=45.0
Q ss_pred CeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCC-CCCCcEEEEeeCCCCC
Q 029453 63 KIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEA-LADVPFLILGNKIDIP 134 (193)
Q Consensus 63 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~pviiv~nK~Dl~ 134 (193)
.+++.++|+|+... ......+..+|.+++++..+... ......+..+..... ..+.++.+|+|++|..
T Consensus 75 ~yD~viiD~~~~~~--~~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~ 143 (206)
T 4dzz_A 75 DYDFAIVDGAGSLS--VITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAYSRKVEARFLITRKIEM 143 (206)
T ss_dssp TSSEEEEECCSSSS--HHHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTT
T ss_pred CCCEEEEECCCCCC--HHHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCC
Confidence 47889999998652 23344566799999999886554 445454444432211 2356789999999964
No 307
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.21 E-value=0.00021 Score=50.15 Aligned_cols=22 Identities=32% Similarity=0.354 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 029453 21 AKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~ 42 (193)
+.|+++|++||||||+.+.+.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999975
No 308
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=97.21 E-value=0.00029 Score=53.74 Aligned_cols=24 Identities=25% Similarity=0.430 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
=.++++|++|||||||++.+.+-.
T Consensus 27 e~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHHTSS
T ss_pred CEEEEECCCCccHHHHHHHHHcCC
Confidence 368999999999999999998754
No 309
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.21 E-value=0.00018 Score=52.77 Aligned_cols=26 Identities=35% Similarity=0.418 Sum_probs=22.1
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhc
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
..+.-.++++|++||||||+++.+.+
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHH
Confidence 34555799999999999999999865
No 310
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.20 E-value=0.0002 Score=50.34 Aligned_cols=24 Identities=21% Similarity=0.342 Sum_probs=20.7
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
+..-|+++|++||||||+++.+..
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHH
Confidence 345689999999999999999864
No 311
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.20 E-value=0.00021 Score=48.48 Aligned_cols=21 Identities=29% Similarity=0.259 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 029453 22 KILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~ 42 (193)
.|++.|++||||||+++.+..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999864
No 312
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.20 E-value=0.00021 Score=49.63 Aligned_cols=21 Identities=43% Similarity=0.578 Sum_probs=18.9
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 029453 23 ILFLGLDNSGKTTLLHMLKDE 43 (193)
Q Consensus 23 i~i~G~~~~GKssl~~~l~~~ 43 (193)
|+|+||+|||||||++.+...
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999998643
No 313
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.18 E-value=0.00019 Score=51.04 Aligned_cols=26 Identities=35% Similarity=0.307 Sum_probs=22.4
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhc
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
..+.--++|+|++|||||||++.+.+
T Consensus 22 i~~G~~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 22 IETQAITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 34556799999999999999999976
No 314
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.18 E-value=0.00012 Score=52.41 Aligned_cols=25 Identities=20% Similarity=0.247 Sum_probs=16.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHHh-cC
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLK-DE 43 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~-~~ 43 (193)
+.--++|+|++||||||+++.+. +.
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHHC--
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 34478999999999999999998 54
No 315
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.17 E-value=0.00022 Score=51.47 Aligned_cols=24 Identities=25% Similarity=0.369 Sum_probs=20.8
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHh
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLK 41 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~ 41 (193)
.+.--++++|++|||||||++.+.
T Consensus 28 ~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 28 PEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHH
Confidence 345578999999999999999876
No 316
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.17 E-value=0.00026 Score=49.59 Aligned_cols=25 Identities=44% Similarity=0.534 Sum_probs=21.6
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhc
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
.+...|+++|++||||||+++.+.+
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4566899999999999999998864
No 317
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.16 E-value=0.00026 Score=53.37 Aligned_cols=26 Identities=27% Similarity=0.120 Sum_probs=22.1
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhc
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
..+.+-|+|+|++|||||||++.+.+
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34667899999999999999998753
No 318
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=97.15 E-value=0.00025 Score=52.80 Aligned_cols=24 Identities=33% Similarity=0.444 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
-.++++|+.|||||||++.+.+-.
T Consensus 65 e~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 65 QLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp CEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 368999999999999999998754
No 319
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.15 E-value=0.00029 Score=48.15 Aligned_cols=22 Identities=32% Similarity=0.353 Sum_probs=19.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 029453 21 AKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~ 42 (193)
..|++.|++||||||+.+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3589999999999999999986
No 320
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.14 E-value=0.00029 Score=49.23 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=20.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHHh
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLK 41 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~ 41 (193)
+...|+++|++||||||+.+.+.
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La 46 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFA 46 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHH
Confidence 34589999999999999999986
No 321
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.13 E-value=0.0003 Score=48.38 Aligned_cols=22 Identities=32% Similarity=0.466 Sum_probs=20.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHh
Q 029453 20 EAKILFLGLDNSGKTTLLHMLK 41 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~ 41 (193)
...|+++|++||||||+.+.+.
T Consensus 4 g~~I~l~G~~GsGKST~~~~La 25 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLA 25 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999986
No 322
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.13 E-value=0.00027 Score=49.95 Aligned_cols=20 Identities=30% Similarity=0.522 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 029453 22 KILFLGLDNSGKTTLLHMLK 41 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~ 41 (193)
+|+|.|++||||||+++.|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQII 21 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 79999999999999999984
No 323
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.13 E-value=0.00029 Score=52.71 Aligned_cols=26 Identities=23% Similarity=0.304 Sum_probs=22.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCc
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDERL 45 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~~~ 45 (193)
.-.++++|++|||||||+|.+.+...
T Consensus 169 geiv~l~G~sG~GKSTll~~l~g~~~ 194 (301)
T 1u0l_A 169 GKISTMAGLSGVGKSSLLNAINPGLK 194 (301)
T ss_dssp SSEEEEECSTTSSHHHHHHHHSTTCC
T ss_pred CCeEEEECCCCCcHHHHHHHhccccc
Confidence 34789999999999999999987654
No 324
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.12 E-value=0.0003 Score=48.54 Aligned_cols=23 Identities=22% Similarity=0.338 Sum_probs=20.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
...|+|.|++||||||+++.+..
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999854
No 325
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.11 E-value=0.00021 Score=54.85 Aligned_cols=25 Identities=28% Similarity=0.397 Sum_probs=21.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
.-+++|+|++|||||||++.+.+-.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999987643
No 326
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.11 E-value=0.00044 Score=51.34 Aligned_cols=26 Identities=27% Similarity=0.326 Sum_probs=22.2
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhc
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
..+..-|.+.|++||||||+++.+..
T Consensus 30 ~~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 30 VESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp CSSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34567899999999999999999864
No 327
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.10 E-value=8.9e-05 Score=55.57 Aligned_cols=26 Identities=27% Similarity=0.523 Sum_probs=21.6
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
+.-.++++|++|||||||+|.+.+..
T Consensus 172 ~G~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 172 QDKTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC--
T ss_pred CCCEEEEECCCCCCHHHHHHHhcccc
Confidence 34589999999999999999998754
No 328
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.10 E-value=0.0003 Score=49.74 Aligned_cols=21 Identities=24% Similarity=0.466 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 029453 22 KILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~ 42 (193)
+|+|+|++||||||+++.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999853
No 329
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.09 E-value=0.00036 Score=48.15 Aligned_cols=25 Identities=36% Similarity=0.566 Sum_probs=21.7
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcC
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDE 43 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~ 43 (193)
+...|+++|++||||||+.+.+...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4568999999999999999998654
No 330
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.09 E-value=0.00031 Score=51.08 Aligned_cols=28 Identities=25% Similarity=0.312 Sum_probs=23.3
Q ss_pred CCCCcccEEEEEcCCCCCHHHHHHHHhc
Q 029453 15 GLWQKEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 15 ~~~~~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
....+...|+++|++||||||+.+.+..
T Consensus 27 ~~~~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 27 KSSKQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp CCCSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred CcccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3445667899999999999999999854
No 331
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.08 E-value=0.00036 Score=49.54 Aligned_cols=24 Identities=21% Similarity=0.429 Sum_probs=20.9
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
+...|+|.|++||||||+.+.|..
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999998853
No 332
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.08 E-value=0.0003 Score=49.21 Aligned_cols=23 Identities=22% Similarity=0.512 Sum_probs=20.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
...|+++|++||||||+++.|..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999864
No 333
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.08 E-value=0.00014 Score=49.80 Aligned_cols=52 Identities=17% Similarity=0.043 Sum_probs=27.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCeEEEEEEcCChhhh
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMA 77 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~ 77 (193)
..++|+|++|||||||++.+.+-... .+.....+.+++..+.-+|.++...+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~-----~g~~~G~I~~dg~~i~~~~~~~~d~~ 54 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRE-----RGLRVAVVKRHAHGDFEIDKEGKDSW 54 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHH-----TTCCEEEEEC------------CHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhh-----cCCceEEEEEcCcccccCCccchhHH
Confidence 36899999999999999998763211 11124566666655444454454443
No 334
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.08 E-value=0.00035 Score=52.41 Aligned_cols=25 Identities=24% Similarity=0.206 Sum_probs=22.3
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhc
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
.+...|+|+|++|||||||++.+.+
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 5567899999999999999999875
No 335
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.07 E-value=0.00037 Score=48.21 Aligned_cols=23 Identities=22% Similarity=0.265 Sum_probs=20.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
...|++.|++||||||+.+.+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999998753
No 336
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.07 E-value=0.00039 Score=50.29 Aligned_cols=24 Identities=38% Similarity=0.526 Sum_probs=21.7
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHh
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLK 41 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~ 41 (193)
.+..+|++.|++||||||+++.|.
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~ 50 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLK 50 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHH
Confidence 467799999999999999999986
No 337
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=97.07 E-value=0.007 Score=45.10 Aligned_cols=84 Identities=12% Similarity=0.123 Sum_probs=51.4
Q ss_pred CeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEE-EEeeCCCCCCCCCHHH
Q 029453 63 KIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFL-ILGNKIDIPYAASEDE 141 (193)
Q Consensus 63 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pvi-iv~nK~Dl~~~~~~~~ 141 (193)
.+++.++|+|+...... ....+..+|.+++++..+ ..++......+..+.......+.+++ +|+|+++.. ...++
T Consensus 156 ~yD~ViiD~p~~~~~~~-~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~~--~~~~~ 231 (307)
T 3end_A 156 DTDVVIFDVLGDVVCGG-FAAPLQHADQAVVVTAND-FDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRAT--DEVDR 231 (307)
T ss_dssp SCSEEEEEECCSSCCGG-GGGGGGTCSEEEEEECSS-HHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSCC--HHHHH
T ss_pred cCCEEEEeCCCccchHH-HHHHHHHCCEEEEEecCc-HHHHHHHHHHHHHHHHhhhcCCCceEEEEEecCCcH--HHHHH
Confidence 46889999987533211 123457799999998774 43455665555555432223456655 899999842 33445
Q ss_pred HHHhhCCCc
Q 029453 142 LRYHMGLTN 150 (193)
Q Consensus 142 ~~~~~~~~~ 150 (193)
+.+.++...
T Consensus 232 ~~~~~g~~v 240 (307)
T 3end_A 232 FCKETNFRR 240 (307)
T ss_dssp HHHHHTCCE
T ss_pred HHHHcCCCc
Confidence 666666554
No 338
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.07 E-value=0.00038 Score=48.11 Aligned_cols=24 Identities=38% Similarity=0.439 Sum_probs=20.6
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
+...|++.|++||||||+.+.+..
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999864
No 339
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.06 E-value=0.00032 Score=48.13 Aligned_cols=24 Identities=33% Similarity=0.394 Sum_probs=20.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDE 43 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~ 43 (193)
...++++|++|||||||++.+...
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Confidence 357899999999999999998753
No 340
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.06 E-value=0.0004 Score=50.52 Aligned_cols=24 Identities=29% Similarity=0.260 Sum_probs=21.5
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHh
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLK 41 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~ 41 (193)
.+...|+|+|++||||||+++.+.
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHH
Confidence 355689999999999999999997
No 341
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.06 E-value=0.00033 Score=47.83 Aligned_cols=22 Identities=23% Similarity=0.440 Sum_probs=19.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 029453 21 AKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~ 42 (193)
..|.+.|++||||||+.+.+..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999864
No 342
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.05 E-value=0.00038 Score=49.67 Aligned_cols=24 Identities=21% Similarity=0.351 Sum_probs=20.3
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHh
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLK 41 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~ 41 (193)
.+...|+|.|++||||||+++.|.
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La 28 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRIT 28 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHH
T ss_pred ccCcEEEEECCCCCCHHHHHHHHH
Confidence 345689999999999999999986
No 343
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.05 E-value=0.00049 Score=47.44 Aligned_cols=27 Identities=37% Similarity=0.453 Sum_probs=22.9
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHHhc
Q 029453 16 LWQKEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 16 ~~~~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
...+...|++.|++||||||+++.+..
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 345667899999999999999999854
No 344
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.05 E-value=0.00039 Score=48.45 Aligned_cols=21 Identities=29% Similarity=0.446 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 029453 22 KILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~ 42 (193)
.|+|.|++||||||+++.+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999999864
No 345
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.04 E-value=0.00043 Score=48.51 Aligned_cols=26 Identities=35% Similarity=0.316 Sum_probs=22.3
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhc
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
..+...|+++|++||||||+++.+.+
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34567899999999999999998864
No 346
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.04 E-value=0.00041 Score=48.34 Aligned_cols=27 Identities=26% Similarity=0.201 Sum_probs=22.9
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcC
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDE 43 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~ 43 (193)
.++...|+|+|++||||||+.+.|...
T Consensus 5 ~~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 5 AKHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp -CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHC
Confidence 456678999999999999999998763
No 347
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.04 E-value=0.00033 Score=52.41 Aligned_cols=24 Identities=21% Similarity=0.320 Sum_probs=21.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
.-.++++|++|||||||+|.+. ..
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred CcEEEEECCCCCCHHHHHHHHH-Hh
Confidence 3478999999999999999998 54
No 348
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.03 E-value=0.00044 Score=48.52 Aligned_cols=24 Identities=46% Similarity=0.674 Sum_probs=20.9
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
+...|+|.|++||||||+++.+..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 346799999999999999999864
No 349
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.01 E-value=0.00045 Score=47.53 Aligned_cols=22 Identities=32% Similarity=0.457 Sum_probs=19.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHh
Q 029453 20 EAKILFLGLDNSGKTTLLHMLK 41 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~ 41 (193)
...|+++|++||||||+.+.+.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La 26 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLA 26 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999985
No 350
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.01 E-value=0.00043 Score=47.75 Aligned_cols=21 Identities=29% Similarity=0.449 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 029453 22 KILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~ 42 (193)
.|+|.|++||||||+++.+..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999864
No 351
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.01 E-value=0.00049 Score=47.68 Aligned_cols=23 Identities=30% Similarity=0.304 Sum_probs=20.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHHh
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLK 41 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~ 41 (193)
+...|++.|++||||||+.+.+.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La 30 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIV 30 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 44689999999999999999885
No 352
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.00 E-value=0.00049 Score=48.03 Aligned_cols=25 Identities=44% Similarity=0.574 Sum_probs=21.7
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcC
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDE 43 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~ 43 (193)
+...|+|.|++||||||+++.+...
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 3467999999999999999998764
No 353
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.99 E-value=0.00038 Score=53.90 Aligned_cols=24 Identities=33% Similarity=0.414 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
=.++++|++|||||||++.+.+-.
T Consensus 48 e~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 48 QRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTCS
T ss_pred CEEEEECCCCChHHHHHHHHhCCC
Confidence 368999999999999999998643
No 354
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.98 E-value=0.0003 Score=47.01 Aligned_cols=25 Identities=24% Similarity=0.351 Sum_probs=21.6
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcC
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDE 43 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~ 43 (193)
+.-.++++|++|+|||||++.+.+.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4557999999999999999998763
No 355
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.97 E-value=0.0005 Score=48.52 Aligned_cols=21 Identities=33% Similarity=0.477 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 029453 22 KILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~ 42 (193)
+|+++|+|||||+|...++..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999863
No 356
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.97 E-value=0.00051 Score=48.71 Aligned_cols=24 Identities=29% Similarity=0.538 Sum_probs=20.9
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
+...|+|.|++||||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999853
No 357
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.95 E-value=0.00052 Score=48.50 Aligned_cols=21 Identities=29% Similarity=0.547 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 029453 22 KILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~ 42 (193)
+|+|.|++||||||+++.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999853
No 358
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.94 E-value=0.00056 Score=48.10 Aligned_cols=24 Identities=33% Similarity=0.501 Sum_probs=21.2
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
+...|+|.|++||||||+++.+..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999863
No 359
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.94 E-value=0.00047 Score=47.07 Aligned_cols=21 Identities=43% Similarity=0.718 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 029453 22 KILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~ 42 (193)
+|+++|++||||||+.+.+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 699999999999999999864
No 360
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.94 E-value=0.00055 Score=48.07 Aligned_cols=24 Identities=46% Similarity=0.625 Sum_probs=21.2
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
+...|++.|++||||||+++.|..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHH
Confidence 456899999999999999999863
No 361
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.94 E-value=0.00043 Score=51.04 Aligned_cols=21 Identities=33% Similarity=0.523 Sum_probs=19.5
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 029453 23 ILFLGLDNSGKTTLLHMLKDE 43 (193)
Q Consensus 23 i~i~G~~~~GKssl~~~l~~~ 43 (193)
+++.|++|||||||++.+.+.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 999999999999999999763
No 362
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.93 E-value=0.0015 Score=45.56 Aligned_cols=22 Identities=27% Similarity=0.339 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 029453 21 AKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~ 42 (193)
..+.+.|++|+|||+|+..+..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~ 76 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIAN 76 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999998864
No 363
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.93 E-value=0.00059 Score=46.73 Aligned_cols=23 Identities=39% Similarity=0.371 Sum_probs=20.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHHh
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLK 41 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~ 41 (193)
+...|++.|++||||||+++.+.
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHH
Confidence 45679999999999999999986
No 364
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.93 E-value=0.00043 Score=52.99 Aligned_cols=21 Identities=38% Similarity=0.495 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 029453 22 KILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~ 42 (193)
.++|+|++||||||+++.+.+
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 899999999999999999864
No 365
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=96.92 E-value=0.0013 Score=53.75 Aligned_cols=25 Identities=20% Similarity=0.361 Sum_probs=21.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
.-.++++|++|||||||++.+.+-.
T Consensus 369 G~~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 369 GKTVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp TCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhhcc
Confidence 3479999999999999999998754
No 366
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.91 E-value=0.00066 Score=50.82 Aligned_cols=23 Identities=35% Similarity=0.524 Sum_probs=20.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHHh
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLK 41 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~ 41 (193)
+.-.++++|++||||||+++.+.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~La 123 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLG 123 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHH
Confidence 34589999999999999999986
No 367
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.90 E-value=0.00055 Score=48.63 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=20.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHHh
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLK 41 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~ 41 (193)
+...|+|.|++||||||+.+.+.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La 26 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIK 26 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 34679999999999999999985
No 368
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.90 E-value=0.00065 Score=48.07 Aligned_cols=24 Identities=25% Similarity=0.263 Sum_probs=21.2
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
+...|+|.|++||||||+++.+..
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999865
No 369
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.89 E-value=0.0005 Score=51.43 Aligned_cols=23 Identities=43% Similarity=0.608 Sum_probs=20.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHHh
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLK 41 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~ 41 (193)
+.-.++++|++||||||+++.+.
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~La 121 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLA 121 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHH
Confidence 44579999999999999999985
No 370
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.89 E-value=0.00064 Score=45.90 Aligned_cols=21 Identities=33% Similarity=0.558 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 029453 22 KILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~ 42 (193)
+|++.|.+||||||+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999864
No 371
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.89 E-value=0.00051 Score=52.06 Aligned_cols=26 Identities=23% Similarity=0.276 Sum_probs=22.1
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
+.-.++++|++|||||||++.+.+-.
T Consensus 170 ~g~~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp HTCCEEEEESTTSCHHHHHHHGGGGS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34479999999999999999998653
No 372
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.89 E-value=0.00074 Score=47.16 Aligned_cols=23 Identities=30% Similarity=0.313 Sum_probs=20.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHHh
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLK 41 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~ 41 (193)
+...|+|.|++||||||+.+.+.
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~ 36 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLV 36 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 45579999999999999999886
No 373
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.87 E-value=0.00074 Score=48.41 Aligned_cols=26 Identities=27% Similarity=0.307 Sum_probs=21.6
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhc
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
..+...|+|.|++||||||+.+.|..
T Consensus 13 ~~~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 13 SPKGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34557899999999999999999853
No 374
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.87 E-value=0.00055 Score=52.54 Aligned_cols=26 Identities=42% Similarity=0.469 Sum_probs=22.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
+.-.++|+|++|||||||++.+.+-.
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTTS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 44589999999999999999998643
No 375
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=96.86 E-value=0.0011 Score=54.17 Aligned_cols=26 Identities=19% Similarity=0.374 Sum_probs=22.2
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
+.-.++++|++|||||||++.+.+-.
T Consensus 368 ~G~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 368 QGKTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34479999999999999999998654
No 376
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.86 E-value=0.00076 Score=45.97 Aligned_cols=23 Identities=30% Similarity=0.333 Sum_probs=20.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
...++++|++||||||++.++..
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999875
No 377
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.85 E-value=0.0007 Score=48.66 Aligned_cols=24 Identities=17% Similarity=0.189 Sum_probs=20.5
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHh
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLK 41 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~ 41 (193)
.+.+.|+|.|++||||||+.+.+.
T Consensus 7 ~~~~~i~i~G~~GsGKsTla~~la 30 (233)
T 3r20_A 7 SGSLVVAVDGPAGTGKSSVSRGLA 30 (233)
T ss_dssp --CCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 356789999999999999999986
No 378
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.84 E-value=0.00068 Score=47.06 Aligned_cols=23 Identities=30% Similarity=0.299 Sum_probs=20.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
...|++.|++||||||+.+.+..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998854
No 379
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=96.84 E-value=0.0013 Score=53.86 Aligned_cols=25 Identities=28% Similarity=0.364 Sum_probs=21.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
.-.++++|++|||||||++.+.+-.
T Consensus 370 G~~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 370 GSVTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp TCEEEEECCTTSSSTHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCc
Confidence 3479999999999999999998754
No 380
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.83 E-value=0.00072 Score=49.10 Aligned_cols=24 Identities=21% Similarity=0.153 Sum_probs=21.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
+.+.|+|.|++||||||+.+.|..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 557899999999999999998854
No 381
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.83 E-value=0.00062 Score=49.37 Aligned_cols=22 Identities=32% Similarity=0.495 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 029453 22 KILFLGLDNSGKTTLLHMLKDE 43 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~ 43 (193)
-+++.|++|+|||||++.+.+.
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3999999999999999998763
No 382
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.81 E-value=0.0015 Score=53.54 Aligned_cols=26 Identities=31% Similarity=0.439 Sum_probs=22.2
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
+.-.++++|++|||||||++.+.+-.
T Consensus 380 ~G~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 380 PGQKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp TTCEEEEECCTTSSTTHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCc
Confidence 34489999999999999999998644
No 383
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.80 E-value=0.00084 Score=50.80 Aligned_cols=25 Identities=40% Similarity=0.659 Sum_probs=21.6
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhc
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
.+.--++++|++||||||+++.+.+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3566899999999999999999863
No 384
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.80 E-value=0.00086 Score=45.89 Aligned_cols=24 Identities=29% Similarity=0.537 Sum_probs=21.0
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
+...|+++|++||||||+++.+..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999999865
No 385
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.79 E-value=0.00069 Score=52.18 Aligned_cols=25 Identities=36% Similarity=0.445 Sum_probs=21.4
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhc
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
.+.-.++|+|++||||||+++.+.+
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHh
Confidence 3445799999999999999999865
No 386
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.78 E-value=0.00071 Score=48.07 Aligned_cols=23 Identities=22% Similarity=0.174 Sum_probs=20.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHHh
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLK 41 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~ 41 (193)
+.--++++|++|||||||++.+.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~ 44 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFI 44 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHH
Confidence 44578999999999999999986
No 387
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.78 E-value=0.00088 Score=47.70 Aligned_cols=21 Identities=43% Similarity=0.632 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 029453 22 KILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~ 42 (193)
.|+|.|++||||||+++.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999853
No 388
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.77 E-value=0.00085 Score=46.31 Aligned_cols=21 Identities=48% Similarity=0.594 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 029453 22 KILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~ 42 (193)
.|++.|.+||||||+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999864
No 389
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=96.77 E-value=0.0012 Score=53.91 Aligned_cols=25 Identities=24% Similarity=0.554 Sum_probs=21.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
.-.++++|++|||||||++.+.+-.
T Consensus 367 G~~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 367 GETVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp TCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred CCEEEEECCCCChHHHHHHHHhcCC
Confidence 3479999999999999999987643
No 390
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.77 E-value=0.00079 Score=49.00 Aligned_cols=20 Identities=30% Similarity=0.310 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 029453 22 KILFLGLDNSGKTTLLHMLK 41 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~ 41 (193)
-|+|+|++||||||+.+.+.
T Consensus 3 li~I~G~~GSGKSTla~~La 22 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIA 22 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 57899999999999999985
No 391
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.77 E-value=0.00069 Score=46.56 Aligned_cols=21 Identities=38% Similarity=0.567 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 029453 22 KILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~ 42 (193)
.|+++|++||||||+.+.+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999998853
No 392
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.77 E-value=0.00061 Score=53.95 Aligned_cols=26 Identities=23% Similarity=0.362 Sum_probs=22.5
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcC
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDE 43 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~ 43 (193)
.+.-.++|+|++|||||||++.+.+-
T Consensus 136 ~~Ge~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 136 FEGPRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp SSCCCEEEEESTTSSHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCc
Confidence 35668999999999999999998654
No 393
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.77 E-value=0.00078 Score=46.68 Aligned_cols=21 Identities=43% Similarity=0.695 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 029453 22 KILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~ 42 (193)
-|++.|++||||||+++.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999864
No 394
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.76 E-value=0.0007 Score=48.45 Aligned_cols=26 Identities=31% Similarity=0.337 Sum_probs=22.5
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcC
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDE 43 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~ 43 (193)
.+..-|+|.|+.||||||+++.+.+.
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 35568999999999999999998764
No 395
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.76 E-value=0.0006 Score=46.69 Aligned_cols=24 Identities=29% Similarity=0.332 Sum_probs=16.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
+...|++.|.+||||||+.+.+..
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999863
No 396
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.75 E-value=0.00098 Score=49.30 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=21.3
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHh
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLK 41 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~ 41 (193)
.+.+.|+|.|++||||||+.+.|.
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 346789999999999999999986
No 397
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.75 E-value=0.0008 Score=51.31 Aligned_cols=27 Identities=26% Similarity=0.282 Sum_probs=23.2
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
.+.=+++++|++|||||||++.+.+..
T Consensus 69 ~~Gq~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 69 GIGQRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 355589999999999999999998754
No 398
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.75 E-value=0.00073 Score=51.23 Aligned_cols=23 Identities=39% Similarity=0.619 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDE 43 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~ 43 (193)
-.+++.|++|+|||||++.+.+.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 45899999999999999998763
No 399
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.74 E-value=0.00099 Score=46.42 Aligned_cols=24 Identities=29% Similarity=0.362 Sum_probs=21.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
..+.|+++|.+||||||+.+.+..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHH
Confidence 567899999999999999999864
No 400
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.72 E-value=0.0011 Score=45.60 Aligned_cols=22 Identities=27% Similarity=0.262 Sum_probs=19.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 029453 21 AKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~ 42 (193)
..|++.|++||||||+.+.+..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998853
No 401
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.72 E-value=0.001 Score=48.61 Aligned_cols=23 Identities=30% Similarity=0.400 Sum_probs=20.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
...|++.|++||||||+.+.+..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 45799999999999999999864
No 402
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.72 E-value=0.00092 Score=45.31 Aligned_cols=21 Identities=29% Similarity=0.381 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 029453 22 KILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~ 42 (193)
.|++.|++||||||+.+.+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998853
No 403
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.70 E-value=0.001 Score=45.63 Aligned_cols=21 Identities=19% Similarity=0.224 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 029453 22 KILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~ 42 (193)
-.+|+|+.||||||+++.+..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999853
No 404
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.70 E-value=0.00081 Score=52.57 Aligned_cols=25 Identities=32% Similarity=0.287 Sum_probs=21.2
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhc
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
.+.=-++|+|++||||||+++.+.+
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg 189 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQ 189 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHH
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHh
Confidence 3444799999999999999999875
No 405
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.70 E-value=0.00085 Score=49.85 Aligned_cols=26 Identities=15% Similarity=0.087 Sum_probs=21.4
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhc
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
..+.--++|+|++|+|||||+..+.+
T Consensus 32 l~~G~~~~i~G~~G~GKTTl~~~ia~ 57 (296)
T 1cr0_A 32 ARGGEVIMVTSGSGMGKSTFVRQQAL 57 (296)
T ss_dssp BCTTCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 34455789999999999999998753
No 406
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.69 E-value=0.00099 Score=53.84 Aligned_cols=26 Identities=19% Similarity=0.368 Sum_probs=22.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
+.=.++++|++|||||||++.+.+-.
T Consensus 46 ~Ge~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 46 EGMVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44479999999999999999998754
No 407
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.69 E-value=0.0009 Score=53.70 Aligned_cols=25 Identities=28% Similarity=0.251 Sum_probs=21.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
.-.++|+|++||||||+++.+.+--
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3459999999999999999987643
No 408
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.69 E-value=0.0015 Score=46.40 Aligned_cols=21 Identities=38% Similarity=0.363 Sum_probs=17.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 029453 22 KILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~ 42 (193)
-|.++|+|||||+|.+..|..
T Consensus 31 iI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 31 VIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp EEEEECCTTCCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 466789999999999998863
No 409
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.68 E-value=0.00038 Score=49.00 Aligned_cols=21 Identities=38% Similarity=0.550 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 029453 22 KILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~ 42 (193)
-|+|.|++||||||+++.+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999999864
No 410
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.67 E-value=0.0012 Score=44.69 Aligned_cols=22 Identities=27% Similarity=0.481 Sum_probs=19.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 029453 21 AKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~ 42 (193)
-.|++.|.+||||||+.+.|..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999999998853
No 411
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.67 E-value=0.00094 Score=49.16 Aligned_cols=22 Identities=32% Similarity=0.495 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 029453 22 KILFLGLDNSGKTTLLHMLKDE 43 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~ 43 (193)
-++++|++|+|||||++.+.+.
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcChHHHHHHHHHHH
Confidence 3999999999999999998763
No 412
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.67 E-value=0.001 Score=53.69 Aligned_cols=30 Identities=30% Similarity=0.346 Sum_probs=24.4
Q ss_pred CCCCcccEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 15 GLWQKEAKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 15 ~~~~~~~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
+...+.=-++++|+.|||||||++.+.+-.
T Consensus 20 ~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 20 PTPKNNTILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp CCCCTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCCCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 344455578999999999999999998754
No 413
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.64 E-value=0.0008 Score=50.68 Aligned_cols=24 Identities=42% Similarity=0.570 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
.-++|+|+.|||||||++.+.+..
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cEEEEEecCCCCHHHHHHHHHhhc
Confidence 467899999999999999998653
No 414
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.62 E-value=0.00097 Score=48.48 Aligned_cols=23 Identities=26% Similarity=0.456 Sum_probs=20.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
.-.|+++|++||||||+.+.+..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999854
No 415
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.62 E-value=0.001 Score=52.88 Aligned_cols=22 Identities=18% Similarity=0.188 Sum_probs=19.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 029453 21 AKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~ 42 (193)
-.++|+|++|||||||++.+.+
T Consensus 30 e~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhc
Confidence 5689999999999999999863
No 416
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.62 E-value=0.001 Score=52.93 Aligned_cols=23 Identities=35% Similarity=0.488 Sum_probs=20.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHHh
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLK 41 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~ 41 (193)
+.-.++|+|++||||||+++.+.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LA 314 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLA 314 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHH
Confidence 45579999999999999999985
No 417
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.62 E-value=0.0013 Score=50.37 Aligned_cols=23 Identities=43% Similarity=0.608 Sum_probs=20.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHHh
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLK 41 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~ 41 (193)
+.-.++++|++||||||+++.+.
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~La 178 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLA 178 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHH
Confidence 44579999999999999999985
No 418
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.61 E-value=0.0016 Score=44.49 Aligned_cols=25 Identities=20% Similarity=0.369 Sum_probs=21.0
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcC
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDE 43 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~ 43 (193)
..-.+.+.|++|+|||++++.+...
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHH
Confidence 3456899999999999999988643
No 419
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.61 E-value=0.0014 Score=46.92 Aligned_cols=23 Identities=26% Similarity=0.551 Sum_probs=19.7
Q ss_pred cccEEEEEcCCCCCHHHHHHHHh
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLK 41 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~ 41 (193)
...+++++|++||||||+...+.
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~ 29 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIK 29 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHH
T ss_pred cccceeeECCCCCCHHHHHHHHH
Confidence 46799999999999999999885
No 420
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=96.60 E-value=0.0012 Score=52.02 Aligned_cols=28 Identities=18% Similarity=0.243 Sum_probs=23.6
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
..+.=+++|+|++|||||||++.+.+..
T Consensus 154 i~~Gq~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 154 VGRGQRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp CBTTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 3455689999999999999999998754
No 421
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.59 E-value=0.0011 Score=54.20 Aligned_cols=26 Identities=23% Similarity=0.400 Sum_probs=22.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
+.=.++++|++|||||||++.+.+-.
T Consensus 102 ~Gei~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 102 PGQVLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCC
Confidence 34479999999999999999998754
No 422
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.59 E-value=0.0012 Score=46.57 Aligned_cols=26 Identities=27% Similarity=0.125 Sum_probs=22.5
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhc
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
..+.--++++|++|+|||||+..+..
T Consensus 17 i~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 17 FAPGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp BCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 44556799999999999999999976
No 423
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.59 E-value=0.0012 Score=47.31 Aligned_cols=26 Identities=23% Similarity=0.248 Sum_probs=22.4
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhc
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
..+.--++++|++|||||||+..+.+
T Consensus 21 i~~G~~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 21 IETGSITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CcCCeEEEEECCCCCcHHHHHHHHHH
Confidence 34556789999999999999999886
No 424
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.59 E-value=0.0016 Score=46.79 Aligned_cols=26 Identities=27% Similarity=0.342 Sum_probs=21.9
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhc
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
+.+...|+++|++||||||+.+.+..
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 34567899999999999999998864
No 425
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.58 E-value=0.035 Score=43.59 Aligned_cols=26 Identities=23% Similarity=0.341 Sum_probs=22.5
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhc
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
....--|.+.||||+|||++++.+.+
T Consensus 212 ~~~prGvLL~GPPGtGKTllAkAiA~ 237 (437)
T 4b4t_L 212 IKPPKGVLLYGPPGTGKTLLAKAVAA 237 (437)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHH
Confidence 34566899999999999999999875
No 426
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.53 E-value=0.002 Score=46.15 Aligned_cols=25 Identities=36% Similarity=0.440 Sum_probs=21.8
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhc
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
.+..-|+|.|++||||||+++.+..
T Consensus 24 ~~g~~i~i~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 24 AMSAFITFEGPEGSGKTTVINEVYH 48 (229)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 3567899999999999999999864
No 427
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.53 E-value=0.0018 Score=52.86 Aligned_cols=25 Identities=28% Similarity=0.426 Sum_probs=21.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
.-.++++|++|||||||++.+.+-.
T Consensus 369 Ge~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 369 GSLVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp TCEEEEECSSSSSHHHHHHTTTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCc
Confidence 3479999999999999999987644
No 428
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.51 E-value=0.0014 Score=47.56 Aligned_cols=23 Identities=26% Similarity=0.439 Sum_probs=20.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
...+++.|++|+|||++++.+.+
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHH
Confidence 44699999999999999999865
No 429
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.51 E-value=0.0018 Score=45.54 Aligned_cols=26 Identities=38% Similarity=0.451 Sum_probs=21.7
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhc
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
..+...|++.|++||||||+++.+..
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 34556799999999999999998854
No 430
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.49 E-value=0.0015 Score=53.46 Aligned_cols=26 Identities=23% Similarity=0.372 Sum_probs=22.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
+.=.++++|++|||||||++.+.+-.
T Consensus 116 ~Ge~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 116 DGMVVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHhCCC
Confidence 44579999999999999999998754
No 431
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.47 E-value=0.0017 Score=52.50 Aligned_cols=26 Identities=31% Similarity=0.359 Sum_probs=22.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCc
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDERL 45 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~~~ 45 (193)
.=.++|+|+.|||||||++.+.+-..
T Consensus 312 Ge~~~i~G~NGsGKSTLlk~l~Gl~~ 337 (538)
T 1yqt_A 312 GEVIGIVGPNGIGKTTFVKMLAGVEE 337 (538)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 34789999999999999999987543
No 432
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.45 E-value=0.0017 Score=52.47 Aligned_cols=23 Identities=39% Similarity=0.434 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 029453 22 KILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
.++++|++|||||||++.+.+-.
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998754
No 433
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.45 E-value=0.0027 Score=45.12 Aligned_cols=24 Identities=29% Similarity=0.354 Sum_probs=21.2
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
..-.+++.|++|+|||++++.+..
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999998864
No 434
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.43 E-value=0.0016 Score=50.24 Aligned_cols=25 Identities=44% Similarity=0.457 Sum_probs=21.7
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhc
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
.+.-.++++|++|+|||||++.+.+
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHh
Confidence 3455899999999999999999875
No 435
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=96.41 E-value=0.0063 Score=44.51 Aligned_cols=37 Identities=22% Similarity=0.387 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhCCCCcccEEEEEcCCCCCHHHHHHHHhc
Q 029453 4 VDWFYGILVSLGLWQKEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
..|+..|+... ..+.-.+++.||||+|||.|+..+..
T Consensus 90 ~~~l~~~l~~~--~~~~n~~~l~GppgtGKt~~a~ala~ 126 (267)
T 1u0j_A 90 ASVFLGWATKK--FGKRNTIWLFGPATTGKTNIAEAIAH 126 (267)
T ss_dssp HHHHHHHHTTC--STTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHhCC--CCCCcEEEEECCCCCCHHHHHHHHHh
Confidence 45666665432 12334599999999999999999875
No 436
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.40 E-value=0.0011 Score=49.27 Aligned_cols=24 Identities=25% Similarity=0.393 Sum_probs=17.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
+.+.|+|.|++||||||+.+.|..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 556799999999999999998753
No 437
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=96.40 E-value=0.0016 Score=58.01 Aligned_cols=26 Identities=19% Similarity=0.358 Sum_probs=22.1
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
+.=+|+|+|++|||||||++.+.+-.
T Consensus 1104 ~Ge~vaIVG~SGsGKSTL~~lL~rl~ 1129 (1321)
T 4f4c_A 1104 PGQTLALVGPSGCGKSTVVALLERFY 1129 (1321)
T ss_dssp TTCEEEEECSTTSSTTSHHHHHTTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCc
Confidence 34589999999999999999997643
No 438
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.39 E-value=0.002 Score=52.79 Aligned_cols=25 Identities=32% Similarity=0.384 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCc
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERL 45 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~ 45 (193)
=.++++|+.|||||||++.+.+-..
T Consensus 383 ei~~i~G~NGsGKSTLlk~l~Gl~~ 407 (607)
T 3bk7_A 383 EVIGIVGPNGIGKTTFVKMLAGVEE 407 (607)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3689999999999999999987543
No 439
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.37 E-value=0.0018 Score=44.05 Aligned_cols=25 Identities=24% Similarity=0.335 Sum_probs=21.0
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhc
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
.....+.+.|++|+|||++++.+..
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHH
Confidence 3455789999999999999998864
No 440
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.36 E-value=0.0023 Score=42.56 Aligned_cols=20 Identities=35% Similarity=0.566 Sum_probs=17.6
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 029453 22 KILFLGLDNSGKTTLLHMLK 41 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~ 41 (193)
-.+|+|+.|+||||++..+.
T Consensus 25 ~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 45799999999999999974
No 441
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.34 E-value=0.033 Score=43.66 Aligned_cols=25 Identities=24% Similarity=0.450 Sum_probs=21.5
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhc
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
...--+++.||||+|||++++.+.+
T Consensus 204 ~~prGiLL~GPPGtGKT~lakAiA~ 228 (428)
T 4b4t_K 204 DPPRGVLLYGPPGTGKTMLVKAVAN 228 (428)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHH
Confidence 3445699999999999999999875
No 442
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.34 E-value=0.002 Score=47.48 Aligned_cols=24 Identities=17% Similarity=0.133 Sum_probs=20.6
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
+.--++|+|++|||||||+..+.+
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH
Confidence 444789999999999999999864
No 443
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.31 E-value=0.0023 Score=47.55 Aligned_cols=22 Identities=32% Similarity=0.353 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 029453 21 AKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~ 42 (193)
..|.+.|++||||||+.+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999875
No 444
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.31 E-value=0.0028 Score=47.05 Aligned_cols=25 Identities=12% Similarity=0.074 Sum_probs=20.4
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhc
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
....-+++.|+||+|||++++.+..
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3445677789999999999999864
No 445
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.29 E-value=0.0022 Score=52.51 Aligned_cols=24 Identities=29% Similarity=0.545 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCc
Q 029453 22 KILFLGLDNSGKTTLLHMLKDERL 45 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~~~ 45 (193)
.++++|++|||||||++.+.+-..
T Consensus 380 iv~iiG~NGsGKSTLlk~l~Gl~~ 403 (608)
T 3j16_B 380 ILVMMGENGTGKTTLIKLLAGALK 403 (608)
T ss_dssp EEEEESCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Confidence 379999999999999999987553
No 446
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.28 E-value=0.0026 Score=44.33 Aligned_cols=21 Identities=19% Similarity=0.268 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 029453 22 KILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~ 42 (193)
.|+|.|++||||||+.+.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999854
No 447
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=96.28 E-value=0.0099 Score=46.78 Aligned_cols=25 Identities=16% Similarity=0.203 Sum_probs=21.1
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHh
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLK 41 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~ 41 (193)
..+-.-|+|+|+.++|||+|+|.++
T Consensus 64 ~~~v~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 64 DKEVVAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp TSBEEEEEEEEBTTSSHHHHHHHHH
T ss_pred CCceEEEEEECCCCCchhHHHHHHH
Confidence 4566788899999999999999654
No 448
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.28 E-value=0.0027 Score=41.94 Aligned_cols=26 Identities=15% Similarity=0.282 Sum_probs=22.1
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcC
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDE 43 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~ 43 (193)
.....|.+.|++|+|||++++.+...
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHS
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHh
Confidence 45567999999999999999998653
No 449
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.24 E-value=0.13 Score=38.57 Aligned_cols=24 Identities=25% Similarity=0.340 Sum_probs=21.1
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
..-.+.+.|++|+|||++++.+..
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~ 67 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVAT 67 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHH
T ss_pred CCceEEEECCCCccHHHHHHHHHH
Confidence 345799999999999999999875
No 450
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.23 E-value=0.0078 Score=45.90 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=20.0
Q ss_pred cccEEEEEcCCCCCHHHHHHHHh
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLK 41 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~ 41 (193)
...+|+++|++||||||+.+.+.
T Consensus 23 ~~~~i~l~G~~G~GKTTl~~~la 45 (359)
T 2ga8_A 23 YRVCVILVGSPGSGKSTIAEELC 45 (359)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHH
Confidence 45689999999999999998764
No 451
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.22 E-value=0.0064 Score=45.20 Aligned_cols=22 Identities=41% Similarity=0.585 Sum_probs=19.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 029453 21 AKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~ 42 (193)
-.+++.|++|+|||++++.+..
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~ 69 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAA 69 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3799999999999999998864
No 452
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.20 E-value=0.0049 Score=47.23 Aligned_cols=21 Identities=33% Similarity=0.471 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 029453 22 KILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~ 42 (193)
.++|.|++|+||||+++.+.+
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~ 66 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWE 66 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999875
No 453
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=96.20 E-value=0.0028 Score=48.69 Aligned_cols=20 Identities=20% Similarity=0.431 Sum_probs=17.7
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 029453 22 KILFLGLDNSGKTTLLHMLK 41 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~ 41 (193)
-.+|+|+.||||||+++.+.
T Consensus 25 ~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 35699999999999999975
No 454
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.17 E-value=0.0031 Score=46.72 Aligned_cols=24 Identities=25% Similarity=0.400 Sum_probs=21.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
....+++.|++|+|||++++.+..
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHH
Confidence 456899999999999999999875
No 455
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.17 E-value=0.045 Score=42.94 Aligned_cols=26 Identities=23% Similarity=0.247 Sum_probs=22.4
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhc
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
....--|.+.||||+|||++++.+.+
T Consensus 212 ~~~prGvLLyGPPGTGKTllAkAiA~ 237 (434)
T 4b4t_M 212 IRAPKGALMYGPPGTGKTLLARACAA 237 (434)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCCCCeeEEECcCCCCHHHHHHHHHH
Confidence 34556899999999999999999875
No 456
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=96.16 E-value=0.0057 Score=54.58 Aligned_cols=26 Identities=19% Similarity=0.373 Sum_probs=22.2
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
+.-.++++|++|||||||++.+.+-.
T Consensus 443 ~G~~vaivG~sGsGKSTll~ll~~~~ 468 (1321)
T 4f4c_A 443 AGQTVALVGSSGCGKSTIISLLLRYY 468 (1321)
T ss_dssp TTCEEEEEECSSSCHHHHHHHHTTSS
T ss_pred CCcEEEEEecCCCcHHHHHHHhcccc
Confidence 34489999999999999999988643
No 457
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.14 E-value=0.0035 Score=46.11 Aligned_cols=26 Identities=31% Similarity=0.428 Sum_probs=22.0
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcC
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDE 43 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~ 43 (193)
.....+.+.|++|+|||++++.+...
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 44557999999999999999998753
No 458
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.14 E-value=0.056 Score=41.94 Aligned_cols=26 Identities=19% Similarity=0.340 Sum_probs=22.2
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhc
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
....--|.+.||||+|||++++.+.+
T Consensus 179 i~~prGvLL~GPPGTGKTllAkAiA~ 204 (405)
T 4b4t_J 179 IAQPKGVILYGPPGTGKTLLARAVAH 204 (405)
T ss_dssp CCCCCCEEEESCSSSSHHHHHHHHHH
T ss_pred CCCCCceEEeCCCCCCHHHHHHHHHH
Confidence 34456799999999999999999975
No 459
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.14 E-value=0.0089 Score=44.73 Aligned_cols=23 Identities=22% Similarity=0.319 Sum_probs=20.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
...+.+.|++|+|||+|+..+..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~ 174 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAH 174 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999998764
No 460
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.13 E-value=0.0038 Score=45.19 Aligned_cols=24 Identities=29% Similarity=0.344 Sum_probs=20.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
....+.+.|++|+|||++++.+..
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 445699999999999999999865
No 461
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.12 E-value=0.0034 Score=43.88 Aligned_cols=21 Identities=33% Similarity=0.455 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 029453 22 KILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~ 42 (193)
.+.+.|++|+|||++++.+..
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 499999999999999998864
No 462
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.11 E-value=0.0034 Score=44.94 Aligned_cols=24 Identities=21% Similarity=0.300 Sum_probs=19.8
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHh
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLK 41 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~ 41 (193)
.+.--+++.|++|+|||||+.++.
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~~~ 44 (247)
T 2dr3_A 21 PERNVVLLSGGPGTGKTIFSQQFL 44 (247)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHH
Confidence 344578999999999999988774
No 463
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=96.11 E-value=0.0067 Score=53.98 Aligned_cols=25 Identities=16% Similarity=0.363 Sum_probs=21.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
.-+++++|++|||||||++.+.+-.
T Consensus 416 G~~~~ivG~sGsGKSTl~~ll~g~~ 440 (1284)
T 3g5u_A 416 GQTVALVGNSGCGKSTTVQLMQRLY 440 (1284)
T ss_dssp TCEEEEECCSSSSHHHHHHHTTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3479999999999999999987643
No 464
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.11 E-value=0.003 Score=48.22 Aligned_cols=27 Identities=33% Similarity=0.271 Sum_probs=22.5
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcC
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDE 43 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~ 43 (193)
..+.--+.|+|++|||||||+..+.+.
T Consensus 128 i~~G~i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 128 IETQAITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 345567899999999999999998754
No 465
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.11 E-value=0.0054 Score=43.39 Aligned_cols=21 Identities=33% Similarity=0.558 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 029453 22 KILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~ 42 (193)
.++|.|++|+|||++++.+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998854
No 466
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.10 E-value=0.003 Score=47.07 Aligned_cols=25 Identities=28% Similarity=0.462 Sum_probs=21.6
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhc
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
...-.+++.|++|+|||++++.+.+
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~ 71 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIAN 71 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCCceEEEECCCCcCHHHHHHHHHH
Confidence 3455799999999999999999875
No 467
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.10 E-value=0.071 Score=41.73 Aligned_cols=26 Identities=19% Similarity=0.372 Sum_probs=22.3
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhc
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
....--|.+.||||+|||++++.+.+
T Consensus 213 i~~prGvLLyGPPGTGKTlLAkAiA~ 238 (437)
T 4b4t_I 213 IKPPKGVILYGAPGTGKTLLAKAVAN 238 (437)
T ss_dssp CCCCSEEEEESSTTTTHHHHHHHHHH
T ss_pred CCCCCCCceECCCCchHHHHHHHHHH
Confidence 34456799999999999999999975
No 468
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=96.10 E-value=0.033 Score=42.92 Aligned_cols=25 Identities=28% Similarity=0.434 Sum_probs=21.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcC
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDE 43 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~ 43 (193)
....++|.|++|+|||++++.+...
T Consensus 147 ~~~~vLL~GppGtGKT~la~aia~~ 171 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAVAAE 171 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHh
Confidence 3468999999999999999998653
No 469
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.09 E-value=0.0034 Score=53.99 Aligned_cols=25 Identities=20% Similarity=0.416 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCc
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERL 45 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~ 45 (193)
=.++++|+.|||||||++.+.++..
T Consensus 462 e~v~LiGpNGsGKSTLLk~LagG~i 486 (986)
T 2iw3_A 462 RRYGICGPNGCGKSTLMRAIANGQV 486 (986)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHTCS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCc
Confidence 3689999999999999999986543
No 470
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.09 E-value=0.0033 Score=44.35 Aligned_cols=23 Identities=22% Similarity=0.317 Sum_probs=20.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
...|++.|++||||||+.+.+..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998854
No 471
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.09 E-value=0.0039 Score=46.45 Aligned_cols=23 Identities=35% Similarity=0.479 Sum_probs=20.2
Q ss_pred cccEEEEEcCCCCCHHHHHHHHh
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLK 41 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~ 41 (193)
+.-.++++|++||||||++..+.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA 126 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLA 126 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 45589999999999999999874
No 472
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.08 E-value=0.0048 Score=45.88 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=20.2
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHh
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLK 41 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~ 41 (193)
.....+.|.|++|+|||++++.+.
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la 88 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMA 88 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHH
Confidence 345579999999999999998664
No 473
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.04 E-value=0.0033 Score=47.23 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=20.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
.-.+.+.|++|+|||++++.+.+
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~ 59 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGN 59 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHH
Confidence 35699999999999999999875
No 474
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.04 E-value=0.0046 Score=46.51 Aligned_cols=27 Identities=19% Similarity=0.219 Sum_probs=23.2
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHHhc
Q 029453 16 LWQKEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 16 ~~~~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
...+...+.+.|+||+|||++++.+..
T Consensus 41 ~~~~~~~lli~GpPGTGKT~~v~~v~~ 67 (318)
T 3te6_A 41 MSSQNKLFYITNADDSTKFQLVNDVMD 67 (318)
T ss_dssp HTTCCCEEEEECCCSHHHHHHHHHHHH
T ss_pred cCCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 355777999999999999999999864
No 475
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.03 E-value=0.0089 Score=45.74 Aligned_cols=25 Identities=32% Similarity=0.476 Sum_probs=21.4
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhc
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
...-.+.|.|++|+|||++++.+..
T Consensus 43 ~~~~~vll~G~~G~GKT~la~~l~~ 67 (384)
T 2qby_B 43 EVKFSNLFLGLTGTGKTFVSKYIFN 67 (384)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHH
Confidence 3445899999999999999999865
No 476
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=96.00 E-value=0.00043 Score=49.58 Aligned_cols=21 Identities=19% Similarity=0.287 Sum_probs=18.3
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 029453 23 ILFLGLDNSGKTTLLHMLKDE 43 (193)
Q Consensus 23 i~i~G~~~~GKssl~~~l~~~ 43 (193)
++|+|++|||||||++.+.+-
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~ 50 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTA 50 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 478899999999999998753
No 477
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.99 E-value=0.0049 Score=46.22 Aligned_cols=24 Identities=29% Similarity=0.343 Sum_probs=20.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDE 43 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~ 43 (193)
..-|+|+||+|||||+|...+...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHh
Confidence 446899999999999999998643
No 478
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.98 E-value=0.0041 Score=47.17 Aligned_cols=22 Identities=32% Similarity=0.338 Sum_probs=19.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 029453 21 AKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~ 42 (193)
..|+|.|++|||||||...+..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 4799999999999999998753
No 479
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.97 E-value=0.0047 Score=43.17 Aligned_cols=24 Identities=21% Similarity=0.205 Sum_probs=20.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDE 43 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~ 43 (193)
...|+|+|++|+|||+++..+...
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 346899999999999999998753
No 480
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.96 E-value=0.005 Score=46.10 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=19.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHHh
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLK 41 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~ 41 (193)
+.-.++++|++||||||++..+.
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA 125 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLA 125 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHH
Confidence 34468999999999999999875
No 481
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.95 E-value=0.004 Score=48.67 Aligned_cols=24 Identities=17% Similarity=0.325 Sum_probs=20.7
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
...-|+++|++||||||+.+++..
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 345688999999999999999875
No 482
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.95 E-value=0.0032 Score=47.81 Aligned_cols=21 Identities=29% Similarity=0.463 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 029453 22 KILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~ 42 (193)
.++|.|++|+||||+++.+.+
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 399999999999999998866
No 483
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.95 E-value=0.056 Score=42.69 Aligned_cols=26 Identities=23% Similarity=0.307 Sum_probs=22.6
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhc
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
....--|++.||||+|||+|++.+.+
T Consensus 240 i~pprGILLyGPPGTGKTlLAkAiA~ 265 (467)
T 4b4t_H 240 IDPPKGILLYGPPGTGKTLCARAVAN 265 (467)
T ss_dssp CCCCSEEEECSCTTSSHHHHHHHHHH
T ss_pred CCCCCceEeeCCCCCcHHHHHHHHHh
Confidence 44666899999999999999999875
No 484
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=95.93 E-value=0.0027 Score=51.42 Aligned_cols=27 Identities=30% Similarity=0.486 Sum_probs=23.0
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcC
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDE 43 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~ 43 (193)
..+...++++|++||||||+++.+.+.
T Consensus 366 ~~~G~iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 366 ERQGFTVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp GGSCEEEEEEESSCHHHHHHHHHHHHH
T ss_pred cccceEEEEECCCCChHHHHHHHHHHh
Confidence 446678999999999999999998753
No 485
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=95.93 E-value=0.0023 Score=55.08 Aligned_cols=24 Identities=33% Similarity=0.646 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
=.++|+|+.|||||||++.+.+-.
T Consensus 700 eivaIiGpNGSGKSTLLklLaGll 723 (986)
T 2iw3_A 700 SRIAVIGPNGAGKSTLINVLTGEL 723 (986)
T ss_dssp CEEEECSCCCHHHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 379999999999999999998653
No 486
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.93 E-value=0.0062 Score=44.51 Aligned_cols=26 Identities=27% Similarity=0.349 Sum_probs=22.4
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhc
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
......+.+.|++|+|||++++.+..
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~ 86 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAE 86 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHH
Confidence 34566899999999999999999875
No 487
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.91 E-value=0.0042 Score=47.43 Aligned_cols=25 Identities=28% Similarity=0.578 Sum_probs=21.4
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhc
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
...-.++|.|++|+||||+++.+..
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~ 67 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLS 67 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHH
Confidence 3455799999999999999999875
No 488
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.89 E-value=0.0042 Score=47.02 Aligned_cols=22 Identities=36% Similarity=0.597 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 029453 22 KILFLGLDNSGKTTLLHMLKDE 43 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~ 43 (193)
.++|.|++|+||||+++.+.+.
T Consensus 48 ~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp CEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999998653
No 489
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=95.86 E-value=0.0032 Score=45.94 Aligned_cols=26 Identities=31% Similarity=0.387 Sum_probs=21.9
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcC
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDE 43 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~ 43 (193)
++...|+|.|..||||||+++.|...
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHh
Confidence 45678999999999999999988643
No 490
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.84 E-value=0.0058 Score=46.02 Aligned_cols=22 Identities=36% Similarity=0.564 Sum_probs=19.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 029453 21 AKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~ 42 (193)
..|+|+|++||||||+...+..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999998864
No 491
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.83 E-value=0.003 Score=41.64 Aligned_cols=25 Identities=12% Similarity=0.235 Sum_probs=21.0
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcC
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDE 43 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~ 43 (193)
....|.+.|++|+|||++++.+...
T Consensus 26 ~~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 26 RTSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp CSSCEEEEEETTCCHHHHHGGGCCT
T ss_pred CCCcEEEECCCCccHHHHHHHHHHh
Confidence 3457999999999999999987653
No 492
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.83 E-value=0.0052 Score=46.96 Aligned_cols=25 Identities=28% Similarity=0.538 Sum_probs=21.6
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhc
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
...-.+.|.|++|+|||++++.+..
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~ 66 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLR 66 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHH
Confidence 4556899999999999999999864
No 493
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.82 E-value=0.0045 Score=49.85 Aligned_cols=20 Identities=25% Similarity=0.297 Sum_probs=0.0
Q ss_pred EEEEcCCCCCHHHHHHH--Hhc
Q 029453 23 ILFLGLDNSGKTTLLHM--LKD 42 (193)
Q Consensus 23 i~i~G~~~~GKssl~~~--l~~ 42 (193)
++++|++|||||||++. +.+
T Consensus 42 ~~l~G~nGsGKSTL~~~~ll~G 63 (525)
T 1tf7_A 42 TLVSGTSGTGKTLFSIQFLYNG 63 (525)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHH
No 494
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.82 E-value=0.0065 Score=43.63 Aligned_cols=24 Identities=21% Similarity=0.342 Sum_probs=20.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDE 43 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~ 43 (193)
...|++-|..||||||+++.+...
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 356899999999999999998643
No 495
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.80 E-value=0.0053 Score=45.51 Aligned_cols=24 Identities=29% Similarity=0.458 Sum_probs=20.7
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
....+.+.|++|+|||++++.+..
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999864
No 496
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=95.79 E-value=0.0062 Score=41.86 Aligned_cols=21 Identities=33% Similarity=0.376 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 029453 23 ILFLGLDNSGKTTLLHMLKDE 43 (193)
Q Consensus 23 i~i~G~~~~GKssl~~~l~~~ 43 (193)
+.|+|.++||||++..++...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 689999999999999999854
No 497
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=95.76 E-value=0.011 Score=47.86 Aligned_cols=24 Identities=25% Similarity=0.340 Sum_probs=21.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
+...++++|++|+||||+++.+.+
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~ 130 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAK 130 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 566899999999999999999864
No 498
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=95.75 E-value=0.0064 Score=42.61 Aligned_cols=20 Identities=35% Similarity=0.566 Sum_probs=17.5
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 029453 22 KILFLGLDNSGKTTLLHMLK 41 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~ 41 (193)
-.+|+|+.|+||||++..+.
T Consensus 25 ~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 25 INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHH
Confidence 45789999999999999873
No 499
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.71 E-value=0.006 Score=47.42 Aligned_cols=25 Identities=24% Similarity=0.293 Sum_probs=21.0
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHh
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLK 41 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~ 41 (193)
..+.--++|+|++|||||||+..+.
T Consensus 175 I~~Gei~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 175 VETGSITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCChHHHHHHHH
Confidence 3455579999999999999999774
No 500
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.69 E-value=0.008 Score=45.17 Aligned_cols=24 Identities=25% Similarity=0.394 Sum_probs=21.0
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
....+.+.|++|+|||++++.+..
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~ 73 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVAT 73 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHH
Confidence 345799999999999999999865
Done!