BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029455
(193 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3NWJ|A Chain A, Crystal Structure Of Shikimate Kinase From Arabidopsis
Thaliana (Atsk2)
pdb|3NWJ|B Chain B, Crystal Structure Of Shikimate Kinase From Arabidopsis
Thaliana (Atsk2)
Length = 250
Score = 292 bits (748), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 140/190 (73%), Positives = 162/190 (85%), Gaps = 1/190 (0%)
Query: 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFREKETEVLQKL 60
MMGSGKTTVGKI++ LGY+FFDCDTLIEQ++ GTSVAEIF+ +GE FREKETE L+KL
Sbjct: 56 MMGSGKTTVGKIMARSLGYTFFDCDTLIEQAMKGTSVAEIFEHFGESVFREKETEALKKL 115
Query: 61 SLM-RQLVVSTGGGAVTRPINWRYMQKGISVWLDVPLEALAQRIAAVGTDSRPLLHQCES 119
SLM Q+VVSTGGGAV RPINW+YM KGIS+WLDVPLEALA RIAAVGT SRPLLH ES
Sbjct: 116 SLMYHQVVVSTGGGAVIRPINWKYMHKGISIWLDVPLEALAHRIAAVGTGSRPLLHDDES 175
Query: 120 GDAYTEALNRLSTLWEERGEAYANANARVSLENIAVKLGHKDVSSLTPVTIAIEALEQIE 179
GD YT ALNRLST+W+ RGEAY A+ARVSLENI +KLG++ VS LTP IAIEA EQ++
Sbjct: 176 GDTYTAALNRLSTIWDARGEAYTKASARVSLENITLKLGYRSVSDLTPAEIAIEAFEQVQ 235
Query: 180 GFLKEEDDMA 189
+L++ED MA
Sbjct: 236 SYLEKEDGMA 245
>pdb|2PT5|A Chain A, Crystal Structure Of Shikimate Kinase (Aq_2177) From
Aquifex Aeolicus Vf5
pdb|2PT5|B Chain B, Crystal Structure Of Shikimate Kinase (Aq_2177) From
Aquifex Aeolicus Vf5
pdb|2PT5|C Chain C, Crystal Structure Of Shikimate Kinase (Aq_2177) From
Aquifex Aeolicus Vf5
pdb|2PT5|D Chain D, Crystal Structure Of Shikimate Kinase (Aq_2177) From
Aquifex Aeolicus Vf5
Length = 168
Score = 87.4 bits (215), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 54/151 (35%), Positives = 84/151 (55%), Gaps = 15/151 (9%)
Query: 4 SGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFREKETEVLQKLSLM 63
SGK+TVG +LS L F+D D + Q +G S+ +IF+ GE +FR+ E EVL+ LS
Sbjct: 11 SGKSTVGSLLSRSLNIPFYDVDEEV-QKREGLSIPQIFEKKGEAYFRKLEFEVLKDLSEK 69
Query: 64 RQLVVSTGG--GAVTRPINWRYMQKGISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGD 121
+V+STGG GA +N+ +G +V++D+P E +R + RPLL +
Sbjct: 70 ENVVISTGGGLGANEEALNF-XKSRGTTVFIDIPFEVFLERCK--DSKERPLLKR----- 121
Query: 122 AYTEALNRLSTLWEERGEAYANANARVSLEN 152
L+ + L+EER + Y+ A+ +V E
Sbjct: 122 ----PLDEIKNLFEERRKIYSKADIKVKGEK 148
>pdb|1KAG|A Chain A, Crystal Structure Of The Escherichia Coli Shikimate Kinase
I (Arok)
pdb|1KAG|B Chain B, Crystal Structure Of The Escherichia Coli Shikimate Kinase
I (Arok)
Length = 173
Score = 76.3 bits (186), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 50/138 (36%), Positives = 80/138 (57%), Gaps = 7/138 (5%)
Query: 2 MGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFREKETEVLQKLS 61
MG+GK+T+G+ L+ L F+D D IE+ G V +F L GE FR++E +V+ +L+
Sbjct: 13 MGAGKSTIGRQLAQQLNMEFYDSDQEIEKRT-GADVGWVFDLEGEEGFRDREEKVINELT 71
Query: 62 LMRQLVVSTGGGAV-TRPINWRYMQKGISVWLDVPLEALAQRIAAVGTD-SRPLLHQCES 119
+ +V++TGGG+V +R R +G+ V+L+ +E +++A D RPLLH
Sbjct: 72 EKQGIVLATGGGSVKSRETRNRLSARGVVVYLETTIE---KQLARTQRDKKRPLLHVETP 128
Query: 120 GDAYTEAL-NRLSTLWEE 136
EAL N + L+EE
Sbjct: 129 PREVLEALANERNPLYEE 146
>pdb|3VAA|A Chain A, 1.7 Angstrom Resolution Crystal Structure Of Shikimate
Kinase From Bacteroides Thetaiotaomicron
pdb|3VAA|B Chain B, 1.7 Angstrom Resolution Crystal Structure Of Shikimate
Kinase From Bacteroides Thetaiotaomicron
pdb|3VAA|C Chain C, 1.7 Angstrom Resolution Crystal Structure Of Shikimate
Kinase From Bacteroides Thetaiotaomicron
Length = 199
Score = 70.5 bits (171), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 74/144 (51%), Gaps = 7/144 (4%)
Query: 2 MGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFREKETEVLQKLS 61
MG+GKTT+GK + L F D D IE+ T V E+F GE FRE E +L +++
Sbjct: 34 MGAGKTTLGKAFARKLNVPFIDLDWYIEERFHKT-VGELFTERGEAGFRELERNMLHEVA 92
Query: 62 LMRQLVVSTGGGAVTRPINWRYMQK-GISVWLDVPLEALAQRIAAVGTDSRPLLHQCESG 120
+V+STGGGA N +M + G +V+L+V + L +R+ + RP+L G
Sbjct: 93 EFENVVISTGGGAPCFYDNMEFMNRTGKTVFLNVHPDVLFRRL-RIAKQQRPILQ----G 147
Query: 121 DAYTEALNRLSTLWEERGEAYANA 144
E ++ + E+R Y A
Sbjct: 148 KEDDELMDFIIQALEKRAPFYTQA 171
>pdb|1SHK|A Chain A, The Three-dimensional Structure Of Shikimate Kinase From
Erwinia Chrysanthemi
pdb|2SHK|A Chain A, The Three-Dimensional Structure Of Shikimate Kinase From
Erwinia Chrysanthemi Complexed With Adp
pdb|1SHK|B Chain B, The Three-dimensional Structure Of Shikimate Kinase From
Erwinia Chrysanthemi
pdb|2SHK|B Chain B, The Three-Dimensional Structure Of Shikimate Kinase From
Erwinia Chrysanthemi Complexed With Adp
Length = 173
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/114 (40%), Positives = 64/114 (56%), Gaps = 4/114 (3%)
Query: 3 GSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFREKETEVLQKLSL 62
G GKTTVG+ L+ LGY F D D + Q G +VA++ G FR +E+E LQ ++
Sbjct: 12 GCGKTTVGRELARALGYEFVDTDIFM-QHTSGMTVADVVAAEGWPGFRRRESEALQAVAT 70
Query: 63 MRQLVVSTGGGAVTRPINWRYMQ-KGISVWLDVPLEALAQRI-AAVGTDSRPLL 114
+ VV+TGGG V N ++M+ G V+L P E LA R+ A+ RP L
Sbjct: 71 PNR-VVATGGGMVLLEQNRQFMRAHGTVVYLFAPAEELALRLQASPQAHQRPTL 123
>pdb|1E6C|A Chain A, K15m Mutant Of Shikimate Kinase From Erwinia Chrysanthemi
pdb|1E6C|B Chain B, K15m Mutant Of Shikimate Kinase From Erwinia Chrysanthemi
Length = 173
Score = 67.8 bits (164), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 45/114 (39%), Positives = 64/114 (56%), Gaps = 4/114 (3%)
Query: 3 GSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFREKETEVLQKLSL 62
G G TTVG+ L+ LGY F D D + Q G +VA++ G FR +E+E LQ ++
Sbjct: 12 GCGMTTVGRELARALGYEFVDTDIFM-QHTSGMTVADVVAAEGWPGFRRRESEALQAVAT 70
Query: 63 MRQLVVSTGGGAVTRPINWRYMQ-KGISVWLDVPLEALAQRI-AAVGTDSRPLL 114
+ VV+TGGG V N ++M+ G V+L P E LA R+ A++ RP L
Sbjct: 71 PNR-VVATGGGMVLLEQNRQFMRAHGTVVYLFAPAEELALRLQASLQAHQRPTL 123
>pdb|3TRF|A Chain A, Structure Of A Shikimate Kinase (Arok) From Coxiella
Burnetii
pdb|3TRF|B Chain B, Structure Of A Shikimate Kinase (Arok) From Coxiella
Burnetii
Length = 185
Score = 67.8 bits (164), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 78/144 (54%), Gaps = 6/144 (4%)
Query: 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFREKETEVLQKL 60
+MG+GKT+VG L+ + +D D IE+ G +A IF++ GE FR +E E+++ L
Sbjct: 13 LMGAGKTSVGSQLAKLTKRILYDSDKEIEKRT-GADIAWIFEMEGEAGFRRREREMIEAL 71
Query: 61 SLMRQLVVSTGGGAVTRPINWRYM-QKGISVWLDVPLEALAQRIAAVGTDSRPLLHQCES 119
+ ++++TGGG V N + + + G+ ++L ++ +RI G RPL + S
Sbjct: 72 CKLDNIILATGGGVVLDEKNRQQISETGVVIYLTASIDTQLKRIGQKGEMRRPLFIKNNS 131
Query: 120 GDAYTEALNRLSTLWEERGEAYAN 143
E L +L+ + + +A A+
Sbjct: 132 ----KEKLQQLNEIRKPLYQAMAD 151
>pdb|1VIA|A Chain A, Crystal Structure Of Shikimate Kinase
pdb|1VIA|B Chain B, Crystal Structure Of Shikimate Kinase
Length = 175
Score = 67.0 bits (162), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 78/154 (50%), Gaps = 17/154 (11%)
Query: 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFREKETEVLQKL 60
GSGK+T+ + L+ L F D D LIEQ + V+EIF+ E FFRE+E +
Sbjct: 12 FXGSGKSTLARALAKDLDLVFLDSDFLIEQKFN-QKVSEIFEQKRENFFREQEQKXADFF 70
Query: 61 SLMRQLVVSTGGGAVTRPINWRYMQK-GISVWLDVPLEALAQRIAAVGTDSRPLLH-QCE 118
S + ++TGGG V N ++K G ++L E L +R+ RPL + + +
Sbjct: 71 SSCEKACIATGGGFV----NVSNLEKAGFCIYLKADFEYLKKRLDKDEISKRPLFYDEIK 126
Query: 119 SGDAYTEALNRLSTLWEERGEAYANANARVSLEN 152
+ Y E L++ +E++ AN +++EN
Sbjct: 127 AKKLYNERLSK----YEQK------ANFILNIEN 150
>pdb|2IYQ|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Shikimate And Adp
pdb|2IYR|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Shikimate
pdb|2IYR|B Chain B, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Shikimate
pdb|2IYS|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Shikimate, Open Lid (Conf. A)
pdb|2IYT|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Unliganded State, Open Lid (conf. A)
pdb|2IYU|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Adp, Open Lid (Conf. A)
pdb|2IYV|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Adp, Open Lid (Conf. B)
pdb|2IYW|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Mgatp, Open Lid (Conf. B)
pdb|2IYX|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Shikimate And So4
pdb|2IYY|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Shikimate-3-Phosphate And So4
pdb|2IYZ|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Shikimate-3-Phosphate And Adp
Length = 184
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 69/147 (46%), Gaps = 3/147 (2%)
Query: 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFREKETEVLQKL 60
+ GSGK+T+G+ L+ LG D D IEQ G S+A+IF GE FR E +V++
Sbjct: 10 LPGSGKSTIGRRLAKALGVGLLDTDVAIEQRT-GRSIADIFATDGEQEFRRIEEDVVRAA 68
Query: 61 SLMRQLVVSTGGGAVTRPINWRYMQKGISVWLDVPLEALAQRIAAVGTDSRPLLHQCESG 120
V+S GGGAVT P + V+L++ +R G RPLL +
Sbjct: 69 LADHDGVLSLGGGAVTSPGVRAALAGHTVVYLEISAAEGVRRTG--GNTVRPLLAGPDRA 126
Query: 121 DAYTEALNRLSTLWEERGEAYANANAR 147
+ Y + + + L+ + N R
Sbjct: 127 EKYRALMAKRAPLYRRVATMRVDTNRR 153
>pdb|1L4U|A Chain A, Crystal Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis In Complex With Mgadp And Pt(Ii) At 1.8
Angstrom Resolution
pdb|1L4Y|A Chain A, Crystal Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis In Complex With Mgadp At 2.0 Angstrom
Resolution
pdb|1U8A|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Shikimate
Kinase In Complex With Shikimate And Adp At 2.15
Angstrom Resolution
pdb|1WE2|A Chain A, Crystal Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis In Complex With Mgadp And Shikimic Acid
pdb|1ZYU|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Shikimate
Kinase In Complex With Shikimate And Amppcp At 2.85
Angstrom Resolution
pdb|2G1J|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Shikimate
Kinase At 2.0 Angstrom Resolution
pdb|2G1J|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Shikimate
Kinase At 2.0 Angstrom Resolution
pdb|2G1K|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Shikimate
Kinase In Complex With Shikimate At 1.75 Angstrom
Resolution
pdb|2DFN|A Chain A, Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis Complexed With Adp And Shikimate At 1.9
Angstrons Of Resolution
pdb|2DFT|A Chain A, Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis Complexed With Adp And Mg At 2.8 Angstrons
Of Resolution
pdb|2DFT|B Chain B, Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis Complexed With Adp And Mg At 2.8 Angstrons
Of Resolution
pdb|2DFT|C Chain C, Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis Complexed With Adp And Mg At 2.8 Angstrons
Of Resolution
pdb|2DFT|D Chain D, Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis Complexed With Adp And Mg At 2.8 Angstrons
Of Resolution
pdb|3BAF|A Chain A, Crystal Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis In Complex With Amp-Pnp
Length = 176
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 69/147 (46%), Gaps = 3/147 (2%)
Query: 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFREKETEVLQKL 60
+ GSGK+T+G+ L+ LG D D IEQ G S+A+IF GE FR E +V++
Sbjct: 10 LPGSGKSTIGRRLAKALGVGLLDTDVAIEQRT-GRSIADIFATDGEQEFRRIEEDVVRAA 68
Query: 61 SLMRQLVVSTGGGAVTRPINWRYMQKGISVWLDVPLEALAQRIAAVGTDSRPLLHQCESG 120
V+S GGGAVT P + V+L++ +R G RPLL +
Sbjct: 69 LADHDGVLSLGGGAVTSPGVRAALAGHTVVYLEISAAEGVRRTG--GNTVRPLLAGPDRA 126
Query: 121 DAYTEALNRLSTLWEERGEAYANANAR 147
+ Y + + + L+ + N R
Sbjct: 127 EKYRALMAKRAPLYRRVATMRVDTNRR 153
>pdb|1ZUH|A Chain A, Structural Basis For Shikimate-Binding Specificity Of
Helicobacter Pylori Shikimate Kinase
pdb|1ZUI|A Chain A, Structural Basis For Shikimate-binding Specificity Of
Helicobacter Pylori Shikimate Kinase
pdb|3HR7|A Chain A, Crystal Structure Of The Shikimate Kinase-Sulfate Complex
From Helicobacter Pylori
pdb|3HR7|B Chain B, Crystal Structure Of The Shikimate Kinase-Sulfate Complex
From Helicobacter Pylori
pdb|3MUF|A Chain A, Shikimate Kinase From Helicobacter Pylori In Complex With
Shikimate-3- Phosphate And Adp
Length = 168
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 77/157 (49%), Gaps = 20/157 (12%)
Query: 2 MGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFREKETEVLQKLS 61
MGSGK+++ + L L D D +I + V G SV EIF+ GE FR E ++ +L
Sbjct: 16 MGSGKSSLAQELGLALKLEVLDTDMIISERV-GLSVREIFEELGEDNFRMFEKNLIDELK 74
Query: 62 LMRQ-LVVSTGGGAVTRPINWRYMQKGISVWLDVPLEALAQRIAAVGTDSRPLLHQCESG 120
++ V+STGGG V N + + G + +L + E L +R+ + RPLL+
Sbjct: 75 TLKTPHVISTGGGIVMHE-NLKGL--GTTFYLKMDFETLIKRLNQKEREKRPLLNN---- 127
Query: 121 DAYTEALNRLSTLWEERGEAY-ANA----NARVSLEN 152
L + L+E+R Y NA +AR L N
Sbjct: 128 ------LTQAKELFEKRQALYEKNASFIIDARGGLNN 158
>pdb|3N2E|A Chain A, Crystal Structure Of Helicobactor Pylori Shikimate Kinase
In Complex With Nsc162535
pdb|3N2E|B Chain B, Crystal Structure Of Helicobactor Pylori Shikimate Kinase
In Complex With Nsc162535
pdb|3N2E|C Chain C, Crystal Structure Of Helicobactor Pylori Shikimate Kinase
In Complex With Nsc162535
Length = 168
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 76/157 (48%), Gaps = 20/157 (12%)
Query: 2 MGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFREKETEVLQKLS 61
MGSGK+++ + L L D D +I + V G SV EIF+ GE FR E ++ +L
Sbjct: 10 MGSGKSSLAQELGLALKLEVLDTDMIISERV-GLSVREIFEELGEDNFRMFEKNLIDELK 68
Query: 62 LMRQ-LVVSTGGGAVTRPINWRYMQKGISVWLDVPLEALAQRIAAVGTDSRPLLHQCESG 120
++ V+STGGG V N + + G + +L + E L +R+ RPLL+
Sbjct: 69 TLKTPHVISTGGGIVMHE-NLKGL--GTTFYLKMDFETLIKRLNQKERAKRPLLNN---- 121
Query: 121 DAYTEALNRLSTLWEERGEAY-ANA----NARVSLEN 152
L + L+E+R Y NA +AR L N
Sbjct: 122 ------LTQAKELFEKRQALYEKNASFIIDARGGLNN 152
>pdb|3MRS|A Chain A, Crystal Structure Of Shikimate Kinase Mutant (R57a) From
Helicobacter Pylori
Length = 168
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 76/157 (48%), Gaps = 20/157 (12%)
Query: 2 MGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFREKETEVLQKLS 61
MGSGK+++ + L L D D +I + V G SV EIF+ GE F E ++ +L
Sbjct: 16 MGSGKSSLAQELGLALKLEVLDTDMIISERV-GLSVREIFEELGEDNFAMFEKNLIDELK 74
Query: 62 LMRQ-LVVSTGGGAVTRPINWRYMQKGISVWLDVPLEALAQRIAAVGTDSRPLLHQCESG 120
++ V+STGGG V N + + G + +L + E L +R+ + RPLL+
Sbjct: 75 TLKTPHVISTGGGIVMHE-NLKGL--GTTFYLKMDFETLIKRLNQKEREKRPLLNN---- 127
Query: 121 DAYTEALNRLSTLWEERGEAY-ANA----NARVSLEN 152
L + L+E+R Y NA +AR L N
Sbjct: 128 ------LTQAKELFEKRQALYEKNASFIIDARGGLNN 158
>pdb|1JJI|A Chain A, The Crystal Structure Of A Hyper-Thermophilic
Carboxylesterase From The Archaeon Archaeoglobus
Fulgidus
pdb|1JJI|B Chain B, The Crystal Structure Of A Hyper-Thermophilic
Carboxylesterase From The Archaeon Archaeoglobus
Fulgidus
pdb|1JJI|C Chain C, The Crystal Structure Of A Hyper-Thermophilic
Carboxylesterase From The Archaeon Archaeoglobus
Fulgidus
pdb|1JJI|D Chain D, The Crystal Structure Of A Hyper-Thermophilic
Carboxylesterase From The Archaeon Archaeoglobus
Fulgidus
Length = 311
Score = 30.0 bits (66), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Query: 92 LDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVSLE 151
LD+P++ + ++A DS P Q S Y EA+NR ++EER + +E
Sbjct: 2 LDMPIDPVYYQLAEY-FDSLPKFDQFSSAREYREAINR---IYEERNRQLSQHERVERVE 57
Query: 152 NIAVKLGHKDV 162
+ +K + D+
Sbjct: 58 DRTIKGRNGDI 68
>pdb|2Z6J|A Chain A, Crystal Structure Of S. Pneumoniae Enoyl-acyl Carrier
Protein Reductase (fabk) In Complex With An Inhibitor
pdb|2Z6J|B Chain B, Crystal Structure Of S. Pneumoniae Enoyl-acyl Carrier
Protein Reductase (fabk) In Complex With An Inhibitor
Length = 332
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 67 VVSTGGGAVTRPINWRYMQKGISVWLDVPLEALAQRIAAVGTDS 110
VV+TG G ++ + R+ + GI V VP ALA+R+ +G D+
Sbjct: 91 VVTTGAGNPSKYME-RFHEAGIIVIPVVPSVALAKRMEKIGADA 133
>pdb|2PEY|A Chain A, Crystal Strucutre Of Deletion Mutant Of Aps-Kinase Domain
Of Human Paps-Synthetase 1
pdb|2PEY|B Chain B, Crystal Strucutre Of Deletion Mutant Of Aps-Kinase Domain
Of Human Paps-Synthetase 1
pdb|2PEZ|A Chain A, Crystal Structrue Of Deletion Mutant Of Aps-Kinase Domain
Of Human Paps-Synthetase 1 In Complex With Cyclic Paps
And Dadp
pdb|2PEZ|B Chain B, Crystal Structrue Of Deletion Mutant Of Aps-Kinase Domain
Of Human Paps-Synthetase 1 In Complex With Cyclic Paps
And Dadp
Length = 179
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 48/115 (41%), Gaps = 19/115 (16%)
Query: 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFREKETEVLQKL 60
+ G+GKTTV L L C TL DG ++ + GF E E ++++
Sbjct: 13 LSGAGKTTVSMALEEYLVCHGIPCYTL-----DGDNIRQGLN-KNLGFSPEDREENVRRI 66
Query: 61 SLMRQLVVSTGGGAVTRPI--------NWRYMQKGIS-----VWLDVPLEALAQR 102
+ + +L G +T I N R + +G S V++D PL QR
Sbjct: 67 AEVAKLFADAGLVCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQR 121
>pdb|2OFW|A Chain A, Crystal Structure Of The Apsk Domain Of Human Papss1
Complexed With 2 Aps Molecules
pdb|2OFW|B Chain B, Crystal Structure Of The Apsk Domain Of Human Papss1
Complexed With 2 Aps Molecules
pdb|2OFW|C Chain C, Crystal Structure Of The Apsk Domain Of Human Papss1
Complexed With 2 Aps Molecules
pdb|2OFW|D Chain D, Crystal Structure Of The Apsk Domain Of Human Papss1
Complexed With 2 Aps Molecules
pdb|2OFW|E Chain E, Crystal Structure Of The Apsk Domain Of Human Papss1
Complexed With 2 Aps Molecules
pdb|2OFW|F Chain F, Crystal Structure Of The Apsk Domain Of Human Papss1
Complexed With 2 Aps Molecules
pdb|2OFW|G Chain G, Crystal Structure Of The Apsk Domain Of Human Papss1
Complexed With 2 Aps Molecules
pdb|2OFW|H Chain H, Crystal Structure Of The Apsk Domain Of Human Papss1
Complexed With 2 Aps Molecules
Length = 208
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 48/115 (41%), Gaps = 19/115 (16%)
Query: 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFREKETEVLQKL 60
+ G+GKTTV L L C TL DG ++ + GF E E ++++
Sbjct: 41 LSGAGKTTVSMALEEYLVCHGIPCYTL-----DGDNIRQGLN-KNLGFSPEDREENVRRI 94
Query: 61 SLMRQLVVSTGGGAVTRPI--------NWRYMQKGIS-----VWLDVPLEALAQR 102
+ + +L G +T I N R + +G S V++D PL QR
Sbjct: 95 AEVAKLFADAGLVCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQR 149
>pdb|2OFX|A Chain A, Crystal Structure Of The Apsk Domain Of Human Papss1 In
Complex With Adpmg And Paps
pdb|2OFX|B Chain B, Crystal Structure Of The Apsk Domain Of Human Papss1 In
Complex With Adpmg And Paps
Length = 207
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 48/115 (41%), Gaps = 19/115 (16%)
Query: 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFREKETEVLQKL 60
+ G+GKTTV L L C TL DG ++ + GF E E ++++
Sbjct: 40 LSGAGKTTVSMALEEYLVCHGIPCYTL-----DGDNIRQGLN-KNLGFSPEDREENVRRI 93
Query: 61 SLMRQLVVSTGGGAVTRPI--------NWRYMQKGIS-----VWLDVPLEALAQR 102
+ + +L G +T I N R + +G S V++D PL QR
Sbjct: 94 AEVAKLFADAGLVCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQR 148
>pdb|2YVU|A Chain A, Crystal Structure Of Ape1195
pdb|2YVU|B Chain B, Crystal Structure Of Ape1195
Length = 186
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 14/75 (18%)
Query: 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDG----TSVAEIFKLYGEGFFREKETEV 56
+ GSGKTT+ L+ +L + + L DG T+V+E G GF RE+
Sbjct: 21 LPGSGKTTIATRLADLLQKEGYRVEVL-----DGDWARTTVSE-----GAGFTREERLRH 70
Query: 57 LQKLSLMRQLVVSTG 71
L++++ + +L+ G
Sbjct: 71 LKRIAWIARLLARNG 85
>pdb|1X6V|B Chain B, The Crystal Structure Of Human 3'-Phosphoadenosine-5'-
Phosphosulfate Synthetase 1
pdb|1X6V|A Chain A, The Crystal Structure Of Human 3'-Phosphoadenosine-5'-
Phosphosulfate Synthetase 1
pdb|1XJQ|B Chain B, Adp Complex Of Human Paps Synthetase 1
pdb|1XJQ|A Chain A, Adp Complex Of Human Paps Synthetase 1
pdb|1XNJ|B Chain B, Aps Complex Of Human Paps Synthetase 1
pdb|1XNJ|A Chain A, Aps Complex Of Human Paps Synthetase 1
Length = 630
Score = 28.1 bits (61), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 48/115 (41%), Gaps = 19/115 (16%)
Query: 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFREKETEVLQKL 60
+ G+GKTTV L L C TL DG ++ + GF E E ++++
Sbjct: 60 LSGAGKTTVSMALEEYLVCHGIPCYTL-----DGDNIRQGLN-KNLGFSPEDREENVRRI 113
Query: 61 SLMRQLVVSTGGGAVTRPI--------NWRYMQKGIS-----VWLDVPLEALAQR 102
+ + +L G +T I N R + +G S V++D PL QR
Sbjct: 114 AEVAKLFADAGLVCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQR 168
>pdb|2Z6I|A Chain A, Crystal Structure Of S. Pneumoniae Enoyl-acyl Carrier
Protein Reductase (fabk)
pdb|2Z6I|B Chain B, Crystal Structure Of S. Pneumoniae Enoyl-acyl Carrier
Protein Reductase (fabk)
Length = 332
Score = 27.7 bits (60), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 67 VVSTGGGAVTRPINWRYMQKGISVWLDVPLEALAQRIAAVGTDS 110
VV+TG G ++ R+ + GI V VP ALA+R +G D+
Sbjct: 91 VVTTGAGNPSK-YXERFHEAGIIVIPVVPSVALAKRXEKIGADA 133
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 27.3 bits (59), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 63/154 (40%), Gaps = 31/154 (20%)
Query: 3 GSGKTTVGKILSGVLGYS---FFD-------------CDTLIEQSVDGTSVAEIFKLYGE 46
GSGKTT+ + +SG+L YS F + L E G +V +I LY E
Sbjct: 40 GSGKTTLLRAISGLLPYSGNIFINGMEVRKIRNYIRYSTNLPEAYEIGVTVNDIVYLYEE 99
Query: 47 --GFFREKETEVLQKLS-----LMRQLVVSTGGGAVTRPINWRYMQKGISVWLDVPLE-- 97
G R+ E+L+ L L R+L + G +V + + V LD P E
Sbjct: 100 LKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENV 159
Query: 98 ------ALAQRIAAVGTDSRPLLHQCESGDAYTE 125
+++ I G + + H+ + + Y E
Sbjct: 160 DAARRHVISRYIKEYGKEGILVTHELDMLNLYKE 193
>pdb|3HDT|A Chain A, Crystal Structure Of Putative Kinase From Clostridium
Symbiosum Atcc 14940
pdb|3HDT|B Chain B, Crystal Structure Of Putative Kinase From Clostridium
Symbiosum Atcc 14940
Length = 223
Score = 27.3 bits (59), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 8/48 (16%)
Query: 3 GSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFR 50
GSG VGK L+ LG F+D D +++ + + ++V GE FFR
Sbjct: 24 GSGGRIVGKKLAEELGIHFYD-DDILKLASEKSAV-------GEQFFR 63
>pdb|3U7G|A Chain A, Crystal Structure Of Mpnkp Catalytic Fragment (D170a)
Bound To Single- Stranded Dna (Tcctap)
Length = 379
Score = 26.6 bits (57), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Query: 49 FREKETEVLQKLSLMRQLVVSTGGGAVTRPIN--WRYMQK 86
F+ K VL+KL + Q++V+T G +P++ W ++Q+
Sbjct: 88 FKGKVEAVLEKLGVPFQVLVATHAGLNRKPVSGXWDHLQE 127
>pdb|3U7E|B Chain B, Crystal Structure Of Mpnkp Catalytic Fragment (D170a)
pdb|3U7F|B Chain B, Crystal Structure Of Mpnkp Catalytic Fragment (D170a)
Bound To Single- Stranded Dna (Tcctcp)
pdb|3U7H|B Chain B, Crystal Structure Of Mpnkp Catalytic Fragment (D170a)
Bound To Single- Stranded Dna (Tccttp)
Length = 381
Score = 26.6 bits (57), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Query: 49 FREKETEVLQKLSLMRQLVVSTGGGAVTRPIN--WRYMQK 86
F+ K VL+KL + Q++V+T G +P++ W ++Q+
Sbjct: 90 FKGKVEAVLEKLGVPFQVLVATHAGLNRKPVSGXWDHLQE 129
>pdb|4FE7|A Chain A, Structure Of Xylose-binding Transcription Activator Xylr
Length = 412
Score = 26.6 bits (57), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 73 GAVTRPINWRYMQKGISVWLDVPLEALAQRIAAVGTDSRPLLHQCE 118
G T P NW++ Q ++ WL L IA +R +L CE
Sbjct: 179 GLETAPENWQHAQNRLADWLQT-LPPQTGIIAVTDARARHILQVCE 223
>pdb|4FE4|A Chain A, Crystal Structure Of Apo E. Coli Xylr
pdb|4FE4|B Chain B, Crystal Structure Of Apo E. Coli Xylr
pdb|4FE4|C Chain C, Crystal Structure Of Apo E. Coli Xylr
Length = 392
Score = 26.6 bits (57), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 73 GAVTRPINWRYMQKGISVWLDVPLEALAQRIAAVGTDSRPLLHQCE 118
G T P NW++ Q ++ WL L IA +R +L CE
Sbjct: 159 GLETAPENWQHAQNRLADWLQT-LPPQTGIIAVTDARARHILQVCE 203
>pdb|1YJ5|A Chain A, Molecular Architecture Of Mammalian Polynucleotide Kinase,
A Dna Repair Enzyme
pdb|1YJ5|B Chain B, Molecular Architecture Of Mammalian Polynucleotide Kinase,
A Dna Repair Enzyme
Length = 383
Score = 26.6 bits (57), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Query: 49 FREKETEVLQKLSLMRQLVVSTGGGAVTRPIN--WRYMQK 86
F+ K VL+KL + Q++V+T G +P++ W ++Q+
Sbjct: 92 FKGKVEAVLEKLGVPFQVLVATHAGLNRKPVSGXWDHLQE 131
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,565,980
Number of Sequences: 62578
Number of extensions: 210307
Number of successful extensions: 617
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 582
Number of HSP's gapped (non-prelim): 37
length of query: 193
length of database: 14,973,337
effective HSP length: 93
effective length of query: 100
effective length of database: 9,153,583
effective search space: 915358300
effective search space used: 915358300
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)