Query 029455
Match_columns 193
No_of_seqs 149 out of 1686
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 13:12:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029455.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029455hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02199 shikimate kinase 100.0 5.1E-32 1.1E-36 217.1 21.1 190 1-191 110-299 (303)
2 COG0703 AroK Shikimate kinase 100.0 4.2E-32 9.2E-37 201.9 18.9 159 1-182 10-170 (172)
3 PRK13948 shikimate kinase; Pro 100.0 8.1E-29 1.8E-33 188.4 19.9 159 1-182 18-177 (182)
4 PF01202 SKI: Shikimate kinase 100.0 1.5E-28 3.2E-33 183.5 16.0 156 2-179 1-158 (158)
5 PRK13949 shikimate kinase; Pro 100.0 1.9E-27 4.1E-32 179.3 18.8 159 1-177 9-168 (169)
6 PRK13946 shikimate kinase; Pro 100.0 2.7E-26 5.9E-31 175.3 20.0 164 1-186 18-182 (184)
7 PRK14021 bifunctional shikimat 99.9 2.9E-26 6.2E-31 200.4 19.0 157 1-180 14-176 (542)
8 PRK05057 aroK shikimate kinase 99.9 9.7E-26 2.1E-30 170.5 19.2 158 1-180 12-171 (172)
9 PRK13947 shikimate kinase; Pro 99.9 2.1E-25 4.5E-30 168.1 19.3 156 1-178 9-165 (171)
10 PRK00625 shikimate kinase; Pro 99.9 5.3E-25 1.2E-29 166.3 19.3 158 1-178 8-171 (173)
11 PRK00131 aroK shikimate kinase 99.9 6.3E-24 1.4E-28 159.9 20.3 161 1-183 12-174 (175)
12 PRK03731 aroL shikimate kinase 99.9 2E-22 4.4E-27 151.9 19.2 158 1-180 10-170 (171)
13 PRK08154 anaerobic benzoate ca 99.9 3.7E-22 7.9E-27 163.8 19.8 161 1-182 141-303 (309)
14 PRK13951 bifunctional shikimat 99.9 3.1E-22 6.7E-27 172.8 18.3 149 1-175 8-156 (488)
15 cd00464 SK Shikimate kinase (S 99.9 4.4E-22 9.5E-27 147.2 15.5 145 1-168 7-153 (154)
16 COG1102 Cmk Cytidylate kinase 99.9 7.5E-20 1.6E-24 133.7 16.6 165 1-185 8-177 (179)
17 PRK04182 cytidylate kinase; Pr 99.7 3E-16 6.4E-21 118.7 16.3 163 1-185 8-178 (180)
18 TIGR02173 cyt_kin_arch cytidyl 99.7 4.1E-16 8.9E-21 117.0 16.2 157 1-178 8-170 (171)
19 PRK14532 adenylate kinase; Pro 99.7 7.1E-15 1.5E-19 112.3 17.3 157 1-179 8-186 (188)
20 COG3265 GntK Gluconate kinase 99.7 8E-16 1.7E-20 111.1 11.2 144 2-180 4-159 (161)
21 PRK03839 putative kinase; Prov 99.7 2.8E-15 6E-20 113.9 13.6 151 1-185 8-158 (180)
22 KOG3354 Gluconate kinase [Carb 99.6 3.7E-15 8E-20 108.4 10.2 147 1-181 20-189 (191)
23 PRK13808 adenylate kinase; Pro 99.6 1.5E-13 3.3E-18 113.0 18.4 171 1-188 8-201 (333)
24 COG0283 Cmk Cytidylate kinase 99.6 1.3E-13 2.7E-18 105.8 15.5 31 1-31 12-42 (222)
25 PRK13477 bifunctional pantoate 99.6 4.6E-14 1E-18 122.1 14.1 154 1-182 292-505 (512)
26 TIGR01359 UMP_CMP_kin_fam UMP- 99.6 5.1E-13 1.1E-17 101.5 18.0 103 1-106 7-124 (183)
27 PRK14530 adenylate kinase; Pro 99.6 4.6E-13 9.9E-18 104.6 17.4 102 1-106 11-126 (215)
28 TIGR01313 therm_gnt_kin carboh 99.5 1.9E-13 4.2E-18 102.1 13.6 147 1-179 6-162 (163)
29 PRK09169 hypothetical protein; 99.5 1.5E-13 3.2E-18 131.5 15.6 139 1-148 2118-2261(2316)
30 PRK05541 adenylylsulfate kinas 99.5 1.3E-14 2.9E-19 109.8 6.5 149 1-181 15-173 (176)
31 TIGR01360 aden_kin_iso1 adenyl 99.5 8.2E-13 1.8E-17 100.5 15.9 159 1-180 11-187 (188)
32 PRK14531 adenylate kinase; Pro 99.5 5.6E-13 1.2E-17 101.6 13.8 153 1-178 10-182 (183)
33 COG1936 Predicted nucleotide k 99.5 1.4E-13 3.1E-18 102.1 9.3 146 1-180 8-156 (180)
34 PRK10078 ribose 1,5-bisphospho 99.5 1.4E-13 3E-18 105.2 9.4 152 1-183 10-179 (186)
35 PLN02674 adenylate kinase 99.5 3.9E-12 8.6E-17 100.8 16.8 102 1-106 39-158 (244)
36 PLN02200 adenylate kinase fami 99.5 6.5E-12 1.4E-16 99.4 18.0 160 1-183 51-227 (234)
37 TIGR01351 adk adenylate kinase 99.5 5.6E-12 1.2E-16 98.1 17.0 102 1-106 7-124 (210)
38 PRK06762 hypothetical protein; 99.5 1.2E-12 2.5E-17 98.1 12.8 144 1-179 10-163 (166)
39 PRK01184 hypothetical protein; 99.5 5.8E-12 1.3E-16 95.9 16.6 152 1-183 9-181 (184)
40 KOG3079 Uridylate kinase/adeny 99.5 4.3E-12 9.3E-17 95.0 14.8 163 1-180 16-193 (195)
41 PRK05537 bifunctional sulfate 99.5 8.6E-14 1.9E-18 122.5 6.7 149 1-180 400-562 (568)
42 PRK00023 cmk cytidylate kinase 99.5 3.2E-12 6.8E-17 100.6 14.6 162 1-182 12-223 (225)
43 PRK13975 thymidylate kinase; P 99.5 5.7E-13 1.2E-17 102.3 10.1 155 1-182 10-192 (196)
44 PRK00279 adk adenylate kinase; 99.4 7.1E-12 1.5E-16 97.9 16.0 102 1-106 8-127 (215)
45 PRK14528 adenylate kinase; Pro 99.4 1.6E-11 3.5E-16 93.9 17.4 158 1-177 9-185 (186)
46 PRK14733 coaE dephospho-CoA ki 99.4 5.2E-12 1.1E-16 97.7 14.4 153 1-181 14-199 (204)
47 PRK11545 gntK gluconate kinase 99.4 3.1E-12 6.7E-17 95.9 12.7 149 1-180 3-160 (163)
48 PRK02496 adk adenylate kinase; 99.4 2.3E-11 4.9E-16 92.7 17.4 102 1-106 9-128 (184)
49 PRK06217 hypothetical protein; 99.4 7.5E-12 1.6E-16 95.4 13.9 96 1-107 9-105 (183)
50 cd02020 CMPK Cytidine monophos 99.4 1.7E-12 3.7E-17 94.8 9.8 95 1-106 7-103 (147)
51 TIGR00017 cmk cytidylate kinas 99.4 5.7E-12 1.2E-16 98.6 13.3 31 1-31 10-40 (217)
52 PRK14527 adenylate kinase; Pro 99.4 3.9E-11 8.4E-16 92.0 17.2 157 1-178 14-190 (191)
53 PRK14526 adenylate kinase; Pro 99.4 3.7E-11 8E-16 93.6 16.8 102 1-106 8-122 (211)
54 PRK00081 coaE dephospho-CoA ki 99.4 1.3E-11 2.9E-16 95.0 14.0 31 1-32 10-40 (194)
55 PRK14734 coaE dephospho-CoA ki 99.4 2E-11 4.3E-16 94.4 15.0 153 1-183 9-197 (200)
56 PRK11860 bifunctional 3-phosph 99.4 1.2E-11 2.7E-16 111.0 14.6 158 1-181 450-656 (661)
57 PRK04040 adenylate kinase; Pro 99.4 1.1E-10 2.3E-15 89.5 17.2 114 1-115 10-140 (188)
58 PRK08356 hypothetical protein; 99.4 2.5E-11 5.5E-16 93.4 13.8 152 1-181 13-193 (195)
59 PLN02422 dephospho-CoA kinase 99.3 4E-11 8.6E-16 94.4 14.2 151 1-182 9-196 (232)
60 PRK00889 adenylylsulfate kinas 99.3 2.6E-12 5.5E-17 97.1 7.0 148 1-180 12-170 (175)
61 PRK03846 adenylylsulfate kinas 99.3 3.5E-12 7.7E-17 98.4 7.7 145 1-180 32-192 (198)
62 PLN02459 probable adenylate ki 99.3 1.3E-10 2.8E-15 92.7 16.4 102 1-106 37-153 (261)
63 KOG3347 Predicted nucleotide k 99.3 1.5E-11 3.3E-16 89.1 10.0 127 2-149 16-147 (176)
64 PTZ00088 adenylate kinase 1; P 99.3 1.3E-10 2.9E-15 91.6 16.0 102 1-106 14-130 (229)
65 COG0529 CysC Adenylylsulfate k 99.3 2.8E-12 6.1E-17 95.5 6.0 150 1-180 31-191 (197)
66 PRK03333 coaE dephospho-CoA ki 99.3 5.3E-11 1.2E-15 100.9 14.6 153 1-182 9-194 (395)
67 PLN02842 nucleotide kinase 99.3 1.8E-10 3.9E-15 99.4 16.9 172 1-188 5-210 (505)
68 PRK08233 hypothetical protein; 99.3 7.7E-11 1.7E-15 89.2 13.1 158 1-180 11-177 (182)
69 PRK14730 coaE dephospho-CoA ki 99.3 5.3E-11 1.1E-15 91.7 12.3 32 1-32 9-40 (195)
70 TIGR00152 dephospho-CoA kinase 99.3 7.3E-11 1.6E-15 90.3 13.0 32 1-32 7-38 (188)
71 COG0237 CoaE Dephospho-CoA kin 99.3 1.2E-10 2.6E-15 89.9 13.8 152 1-183 10-195 (201)
72 cd01428 ADK Adenylate kinase ( 99.3 1E-10 2.2E-15 89.4 13.4 103 1-107 7-126 (194)
73 PTZ00451 dephospho-CoA kinase; 99.3 1.7E-10 3.8E-15 91.5 14.9 32 1-32 9-40 (244)
74 PRK14732 coaE dephospho-CoA ki 99.3 1.7E-10 3.8E-15 88.9 14.3 151 1-183 7-193 (196)
75 cd00227 CPT Chloramphenicol (C 99.3 8.6E-11 1.9E-15 88.9 12.1 144 1-178 10-174 (175)
76 cd02021 GntK Gluconate kinase 99.3 3.8E-11 8.2E-16 88.4 9.4 100 1-106 7-118 (150)
77 KOG3220 Similar to bacterial d 99.3 2.2E-10 4.9E-15 86.9 13.3 148 2-180 10-194 (225)
78 PRK09518 bifunctional cytidyla 99.3 1.4E-10 3.1E-15 105.1 14.5 82 87-186 156-237 (712)
79 PRK14529 adenylate kinase; Pro 99.2 4.4E-10 9.5E-15 88.1 15.0 102 1-106 8-126 (223)
80 PRK06547 hypothetical protein; 99.2 7.1E-12 1.5E-16 94.7 4.2 104 1-106 23-138 (172)
81 PRK14731 coaE dephospho-CoA ki 99.2 1.2E-09 2.6E-14 85.0 16.2 31 1-32 13-43 (208)
82 PRK09825 idnK D-gluconate kina 99.2 5.9E-10 1.3E-14 84.5 13.9 152 1-184 11-172 (176)
83 PRK05416 glmZ(sRNA)-inactivati 99.2 3.7E-10 8.1E-15 91.8 12.5 73 88-180 88-160 (288)
84 PRK08118 topology modulation p 99.2 1.1E-10 2.3E-15 87.9 8.5 89 1-106 9-99 (167)
85 COG2019 AdkA Archaeal adenylat 99.2 5.2E-09 1.1E-13 77.5 16.5 159 1-180 12-188 (189)
86 cd02022 DPCK Dephospho-coenzym 99.2 5.8E-10 1.3E-14 84.7 11.6 31 1-32 7-37 (179)
87 TIGR03574 selen_PSTK L-seryl-t 99.2 9.8E-10 2.1E-14 87.7 13.4 148 1-182 7-171 (249)
88 TIGR02322 phosphon_PhnN phosph 99.2 4.7E-10 1E-14 84.9 11.0 89 62-180 88-178 (179)
89 TIGR00455 apsK adenylylsulfate 99.2 1E-10 2.2E-15 89.1 7.3 146 1-178 26-184 (184)
90 PF13189 Cytidylate_kin2: Cyti 99.2 2.3E-10 4.9E-15 87.0 8.9 140 2-163 8-178 (179)
91 COG0563 Adk Adenylate kinase a 99.1 4.1E-09 8.9E-14 80.0 15.6 154 1-178 8-177 (178)
92 COG1428 Deoxynucleoside kinase 99.1 9.6E-10 2.1E-14 84.4 12.1 58 87-149 128-186 (216)
93 PF01121 CoaE: Dephospho-CoA k 99.1 2.7E-10 5.8E-15 86.6 8.7 31 1-32 8-38 (180)
94 PF00406 ADK: Adenylate kinase 99.1 2.9E-10 6.3E-15 83.9 8.3 101 1-105 4-122 (151)
95 PF13671 AAA_33: AAA domain; P 99.1 5E-10 1.1E-14 81.4 8.3 102 1-107 7-119 (143)
96 PHA02530 pseT polynucleotide k 99.1 1.2E-09 2.6E-14 89.2 10.7 105 1-106 10-123 (300)
97 PF07931 CPT: Chloramphenicol 99.1 1.4E-09 3.1E-14 82.1 9.5 146 1-178 9-173 (174)
98 PRK12269 bifunctional cytidyla 99.0 7.2E-09 1.6E-13 95.0 15.3 32 1-32 42-73 (863)
99 PRK05506 bifunctional sulfate 99.0 4.7E-10 1E-14 100.5 7.5 147 1-180 468-628 (632)
100 PRK05480 uridine/cytidine kina 99.0 5.1E-09 1.1E-13 81.3 12.0 29 1-29 14-45 (209)
101 PRK13973 thymidylate kinase; P 99.0 1.1E-07 2.4E-12 74.1 18.8 161 1-183 11-209 (213)
102 cd01672 TMPK Thymidine monopho 99.0 7.5E-08 1.6E-12 73.5 17.2 21 86-106 126-146 (200)
103 PF01583 APS_kinase: Adenylyls 99.0 1.3E-09 2.8E-14 80.7 6.6 98 1-104 10-118 (156)
104 PF03668 ATP_bind_2: P-loop AT 99.0 1.3E-08 2.9E-13 81.8 12.4 74 87-180 83-156 (284)
105 cd02023 UMPK Uridine monophosp 98.9 1E-08 2.2E-13 79.0 10.7 30 1-30 7-39 (198)
106 PRK07261 topology modulation p 98.9 2.6E-09 5.6E-14 80.6 6.2 91 1-106 8-99 (171)
107 cd02030 NDUO42 NADH:Ubiquinone 98.9 9.7E-08 2.1E-12 74.8 15.2 71 86-175 143-216 (219)
108 PRK12339 2-phosphoglycerate ki 98.9 2.1E-07 4.6E-12 71.8 16.6 32 1-32 11-42 (197)
109 TIGR03575 selen_PSTK_euk L-ser 98.9 1.7E-09 3.6E-14 89.7 4.7 102 1-115 7-130 (340)
110 PRK00698 tmk thymidylate kinas 98.9 3.4E-07 7.5E-12 70.4 16.9 75 86-182 128-204 (205)
111 PRK12338 hypothetical protein; 98.8 2.9E-07 6.4E-12 75.6 15.9 32 1-32 12-43 (319)
112 TIGR00041 DTMP_kinase thymidyl 98.8 3.4E-07 7.3E-12 70.1 15.1 21 86-106 128-148 (195)
113 COG0572 Udk Uridine kinase [Nu 98.7 9.6E-08 2.1E-12 74.1 9.6 30 1-30 16-48 (218)
114 PTZ00301 uridine kinase; Provi 98.7 1.4E-07 3E-12 73.5 10.7 29 1-29 11-46 (210)
115 PRK06696 uridine kinase; Valid 98.7 2E-07 4.4E-12 73.2 10.9 29 1-29 30-63 (223)
116 PTZ00322 6-phosphofructo-2-kin 98.7 5.1E-09 1.1E-13 94.3 2.0 139 1-148 223-380 (664)
117 cd02024 NRK1 Nicotinamide ribo 98.7 3.3E-08 7.2E-13 75.6 5.8 30 1-30 7-37 (187)
118 cd01673 dNK Deoxyribonucleosid 98.7 3.6E-07 7.8E-12 69.9 11.4 23 1-23 7-29 (193)
119 PF02223 Thymidylate_kin: Thym 98.7 6.6E-07 1.4E-11 68.1 12.7 22 85-106 118-139 (186)
120 PRK07667 uridine kinase; Provi 98.7 3.9E-07 8.4E-12 70.0 10.8 30 1-30 25-59 (193)
121 COG0645 Predicted kinase [Gene 98.6 1.6E-07 3.5E-12 69.8 8.1 101 1-106 9-124 (170)
122 KOG3877 NADH:ubiquinone oxidor 98.6 1.6E-07 3.6E-12 74.8 8.4 30 1-30 79-111 (393)
123 PF13207 AAA_17: AAA domain; P 98.6 2.7E-08 5.9E-13 70.3 3.5 28 1-28 7-34 (121)
124 PRK13974 thymidylate kinase; P 98.6 4.5E-06 9.7E-11 65.1 16.2 75 86-183 135-209 (212)
125 cd02027 APSK Adenosine 5'-phos 98.6 2.4E-07 5.1E-12 68.3 8.2 99 1-105 7-116 (149)
126 COG1660 Predicted P-loop-conta 98.6 5.3E-07 1.2E-11 71.3 10.4 73 88-180 85-157 (286)
127 PLN02165 adenylate isopentenyl 98.6 2E-07 4.4E-12 76.9 8.3 105 1-106 51-195 (334)
128 TIGR00235 udk uridine kinase. 98.6 1E-06 2.2E-11 68.3 11.6 28 1-28 14-44 (207)
129 PRK07933 thymidylate kinase; V 98.6 5.4E-06 1.2E-10 64.7 14.8 75 86-178 133-211 (213)
130 PRK13976 thymidylate kinase; P 98.6 1.6E-05 3.5E-10 61.9 17.4 75 86-183 125-204 (209)
131 PF00485 PRK: Phosphoribulokin 98.5 5.4E-07 1.2E-11 69.2 8.7 28 1-28 7-43 (194)
132 PLN02924 thymidylate kinase 98.5 4.7E-06 1E-10 65.4 13.7 71 86-183 136-206 (220)
133 PF13238 AAA_18: AAA domain; P 98.5 1.3E-07 2.8E-12 67.0 3.9 17 1-17 6-22 (129)
134 cd02026 PRK Phosphoribulokinas 98.5 4.1E-07 8.9E-12 73.6 6.9 28 1-28 7-37 (273)
135 PRK04220 2-phosphoglycerate ki 98.5 1.3E-05 2.9E-10 65.4 15.4 28 1-28 100-128 (301)
136 COG0125 Tmk Thymidylate kinase 98.5 2.7E-05 5.8E-10 60.5 16.1 79 86-183 128-206 (208)
137 COG2074 2-phosphoglycerate kin 98.4 1.3E-05 2.8E-10 63.4 13.7 30 1-31 97-127 (299)
138 PLN02348 phosphoribulokinase 98.4 5.5E-07 1.2E-11 75.7 6.1 28 1-28 57-104 (395)
139 PRK12337 2-phosphoglycerate ki 98.4 2.1E-05 4.6E-10 67.6 15.8 29 1-29 263-292 (475)
140 PRK09270 nucleoside triphospha 98.4 3.3E-06 7.1E-11 66.6 9.6 42 65-106 138-181 (229)
141 PRK14737 gmk guanylate kinase; 98.4 5.7E-06 1.2E-10 63.2 10.5 65 88-179 118-183 (186)
142 PRK00300 gmk guanylate kinase; 98.4 6.9E-06 1.5E-10 63.3 10.8 68 87-181 117-185 (205)
143 cd02025 PanK Pantothenate kina 98.3 2.7E-06 5.9E-11 66.7 7.1 28 1-28 7-41 (220)
144 TIGR03263 guanyl_kin guanylate 98.3 7.2E-06 1.6E-10 61.9 9.0 21 1-21 9-29 (180)
145 TIGR01663 PNK-3'Pase polynucle 98.3 4.2E-06 9.1E-11 73.3 8.5 84 1-106 377-468 (526)
146 PRK07429 phosphoribulokinase; 98.2 1.3E-05 2.9E-10 66.4 9.6 28 1-28 16-46 (327)
147 KOG0635 Adenosine 5'-phosphosu 98.2 3.5E-06 7.6E-11 61.7 5.0 148 1-180 39-200 (207)
148 COG4088 Predicted nucleotide k 98.2 2.6E-05 5.6E-10 60.1 9.8 19 87-105 103-121 (261)
149 PRK05439 pantothenate kinase; 98.1 7.7E-06 1.7E-10 67.2 7.1 29 1-29 94-129 (311)
150 smart00072 GuKc Guanylate kina 98.1 6E-05 1.3E-09 57.3 11.1 17 1-17 10-26 (184)
151 PRK14738 gmk guanylate kinase; 98.1 4.5E-05 9.7E-10 59.2 10.4 22 160-182 175-196 (206)
152 COG0194 Gmk Guanylate kinase [ 98.1 9.2E-05 2E-09 56.1 11.2 68 86-180 114-182 (191)
153 cd02028 UMPK_like Uridine mono 98.0 9.1E-06 2E-10 61.7 5.2 29 1-29 7-40 (179)
154 PF06414 Zeta_toxin: Zeta toxi 98.0 6.1E-05 1.3E-09 58.0 8.8 100 1-106 23-141 (199)
155 PF08433 KTI12: Chromatin asso 98.0 3.6E-05 7.9E-10 62.2 7.8 100 1-106 9-119 (270)
156 KOG3078 Adenylate kinase [Nucl 97.9 0.00011 2.3E-09 57.9 9.6 103 1-106 23-138 (235)
157 TIGR00554 panK_bact pantothena 97.9 1.1E-05 2.4E-10 65.8 4.1 28 1-28 70-104 (290)
158 cd02029 PRK_like Phosphoribulo 97.9 0.00015 3.3E-09 58.3 9.8 29 1-29 7-40 (277)
159 COG4639 Predicted kinase [Gene 97.8 0.00018 3.8E-09 53.0 8.8 98 1-105 10-116 (168)
160 COG3896 Chloramphenicol 3-O-ph 97.8 0.0003 6.5E-09 52.1 9.6 63 88-179 142-204 (205)
161 PF00625 Guanylate_kin: Guanyl 97.8 7.2E-05 1.6E-09 56.8 6.3 18 1-18 10-27 (183)
162 PRK15453 phosphoribulokinase; 97.7 0.0002 4.4E-09 58.0 8.6 29 1-29 13-46 (290)
163 COG1072 CoaA Panthothenate kin 97.6 8.8E-05 1.9E-09 59.5 5.1 44 64-107 187-232 (283)
164 PF00004 AAA: ATPase family as 97.6 4E-05 8.7E-10 54.3 2.9 25 1-25 6-30 (132)
165 COG3709 Uncharacterized compon 97.6 0.00079 1.7E-08 50.1 9.4 89 63-181 93-183 (192)
166 PHA00729 NTP-binding motif con 97.6 0.0004 8.7E-09 54.5 8.2 22 87-108 120-141 (226)
167 TIGR00390 hslU ATP-dependent p 97.5 0.00015 3.3E-09 61.7 4.8 43 1-44 55-100 (441)
168 PF08303 tRNA_lig_kinase: tRNA 97.5 7E-05 1.5E-09 55.7 2.1 27 1-27 7-34 (168)
169 KOG0733 Nuclear AAA ATPase (VC 97.4 0.001 2.2E-08 58.8 9.4 100 1-105 231-371 (802)
170 PF01712 dNK: Deoxynucleoside 97.4 1.8E-05 3.9E-10 58.1 -1.2 74 87-179 69-143 (146)
171 cd02019 NK Nucleoside/nucleoti 97.4 0.00013 2.9E-09 46.5 2.8 17 1-17 7-23 (69)
172 PF01591 6PF2K: 6-phosphofruct 97.4 0.0024 5.2E-08 50.2 10.2 32 1-32 20-56 (222)
173 PRK00091 miaA tRNA delta(2)-is 97.4 0.00054 1.2E-08 56.4 6.8 27 1-27 12-38 (307)
174 COG5324 Uncharacterized conser 97.4 0.0026 5.6E-08 54.9 10.7 26 2-27 383-408 (758)
175 PHA03132 thymidine kinase; Pro 97.4 0.0061 1.3E-07 54.2 13.5 20 87-106 403-422 (580)
176 KOG4238 Bifunctional ATP sulfu 97.4 0.00017 3.6E-09 59.9 3.4 97 1-105 58-169 (627)
177 PLN02318 phosphoribulokinase/u 97.3 0.0008 1.7E-08 59.7 6.7 28 1-28 73-101 (656)
178 PF02224 Cytidylate_kin: Cytid 97.2 0.0024 5.1E-08 47.3 8.1 97 57-176 56-157 (157)
179 KOG1384 tRNA delta(2)-isopente 97.2 0.0025 5.3E-08 52.4 8.7 105 1-106 15-158 (348)
180 KOG3327 Thymidylate kinase/ade 97.2 0.021 4.5E-07 43.4 13.0 79 84-186 123-201 (208)
181 TIGR00174 miaA tRNA isopenteny 97.2 0.0011 2.3E-08 54.1 6.4 27 1-27 7-33 (287)
182 PLN02840 tRNA dimethylallyltra 97.2 0.00064 1.4E-08 58.1 5.2 27 1-27 29-55 (421)
183 PF05496 RuvB_N: Holliday junc 97.2 0.00032 6.9E-09 55.0 2.9 22 1-22 58-79 (233)
184 PRK11784 tRNA 2-selenouridine 97.1 0.0019 4.1E-08 54.0 7.3 99 1-105 149-255 (345)
185 PRK05201 hslU ATP-dependent pr 97.0 0.0011 2.4E-08 56.7 4.9 26 1-26 58-83 (443)
186 PLN02772 guanylate kinase 96.9 0.019 4.2E-07 48.7 11.7 17 1-17 143-159 (398)
187 COG2256 MGS1 ATPase related to 96.9 0.00081 1.8E-08 56.7 2.9 26 1-26 56-81 (436)
188 PF07728 AAA_5: AAA domain (dy 96.8 0.001 2.2E-08 47.9 2.8 22 1-22 7-28 (139)
189 PLN02748 tRNA dimethylallyltra 96.8 0.0021 4.6E-08 55.8 5.1 26 1-26 30-55 (468)
190 KOG0730 AAA+-type ATPase [Post 96.8 0.0063 1.4E-07 54.2 7.8 34 1-35 476-511 (693)
191 KOG0744 AAA+-type ATPase [Post 96.8 0.00076 1.6E-08 55.5 2.0 22 1-22 185-206 (423)
192 smart00382 AAA ATPases associa 96.7 0.001 2.3E-08 46.6 2.1 20 1-20 10-29 (148)
193 PF13521 AAA_28: AAA domain; P 96.7 0.0013 2.8E-08 48.9 2.4 27 1-30 7-33 (163)
194 TIGR01650 PD_CobS cobaltochela 96.6 0.0014 3.1E-08 54.2 2.7 22 1-22 72-93 (327)
195 PRK06761 hypothetical protein; 96.6 0.0015 3.3E-08 53.1 2.5 20 1-20 11-30 (282)
196 KOG3308 Uncharacterized protei 96.6 0.01 2.2E-07 45.7 6.7 29 2-30 13-42 (225)
197 TIGR03167 tRNA_sel_U_synt tRNA 96.5 0.011 2.4E-07 48.8 7.4 99 1-105 135-242 (311)
198 COG4185 Uncharacterized protei 96.5 0.043 9.4E-07 40.9 9.6 32 1-32 10-43 (187)
199 TIGR02640 gas_vesic_GvpN gas v 96.5 0.002 4.3E-08 51.9 2.9 22 1-22 29-50 (262)
200 PRK05342 clpX ATP-dependent pr 96.5 0.0018 3.8E-08 55.5 2.8 25 1-25 116-140 (412)
201 PHA02575 1 deoxynucleoside mon 96.4 0.004 8.7E-08 48.8 3.9 30 1-31 8-38 (227)
202 CHL00195 ycf46 Ycf46; Provisio 96.4 0.0023 5.1E-08 55.9 2.9 25 1-25 267-291 (489)
203 KOG0739 AAA+-type ATPase [Post 96.4 0.033 7.2E-07 45.7 9.2 32 1-32 174-207 (439)
204 smart00763 AAA_PrkA PrkA AAA d 96.4 0.0022 4.7E-08 53.8 2.5 19 1-19 86-104 (361)
205 TIGR00382 clpX endopeptidase C 96.3 0.0031 6.8E-08 54.0 3.0 25 1-25 124-148 (413)
206 PLN00020 ribulose bisphosphate 96.3 0.0032 7E-08 53.0 2.9 32 1-32 156-189 (413)
207 PF07726 AAA_3: ATPase family 96.3 0.002 4.4E-08 46.1 1.4 22 1-22 7-28 (131)
208 cd00009 AAA The AAA+ (ATPases 96.3 0.0039 8.4E-08 44.1 2.9 22 1-22 27-51 (151)
209 TIGR00150 HI0065_YjeE ATPase, 96.2 0.0036 7.7E-08 45.2 2.6 20 1-20 30-49 (133)
210 KOG2702 Predicted panthothenat 96.2 0.02 4.4E-07 45.2 6.6 41 65-105 236-278 (323)
211 TIGR01241 FtsH_fam ATP-depende 96.2 0.0041 8.9E-08 54.6 3.0 25 1-25 96-120 (495)
212 PRK03992 proteasome-activating 96.2 0.0041 8.8E-08 52.9 2.9 24 1-24 173-196 (389)
213 TIGR02881 spore_V_K stage V sp 96.1 0.0033 7.2E-08 50.4 2.1 17 1-17 50-66 (261)
214 PRK06893 DNA replication initi 96.1 0.039 8.4E-07 43.4 8.1 25 1-25 47-76 (229)
215 PF01745 IPT: Isopentenyl tran 96.1 0.004 8.6E-08 48.5 2.4 27 1-27 9-35 (233)
216 COG1618 Predicted nucleotide k 96.1 0.0038 8.2E-08 46.5 2.0 18 1-18 13-30 (179)
217 PRK09087 hypothetical protein; 96.1 0.0049 1.1E-07 48.5 2.8 28 1-28 52-79 (226)
218 PHA02244 ATPase-like protein 96.1 0.005 1.1E-07 51.9 2.9 27 1-27 127-153 (383)
219 PF13173 AAA_14: AAA domain 96.0 0.0054 1.2E-07 43.7 2.7 28 1-28 10-41 (128)
220 PRK05800 cobU adenosylcobinami 96.0 0.0055 1.2E-07 46.1 2.8 20 1-20 9-28 (170)
221 TIGR01242 26Sp45 26S proteasom 96.0 0.0059 1.3E-07 51.4 3.1 24 1-24 164-187 (364)
222 PTZ00454 26S protease regulato 96.0 0.0061 1.3E-07 52.0 3.1 24 1-24 187-210 (398)
223 PRK04195 replication factor C 96.0 0.0058 1.3E-07 53.4 3.0 24 1-24 47-70 (482)
224 CHL00181 cbbX CbbX; Provisiona 95.9 0.0083 1.8E-07 49.0 3.5 17 1-17 67-83 (287)
225 PRK14729 miaA tRNA delta(2)-is 95.9 0.019 4E-07 47.2 5.4 26 1-27 12-37 (300)
226 KOG0743 AAA+-type ATPase [Post 95.9 0.0063 1.4E-07 52.1 2.8 25 1-25 243-267 (457)
227 cd00820 PEPCK_HprK Phosphoenol 95.9 0.0067 1.5E-07 42.1 2.5 26 1-28 23-48 (107)
228 PF03029 ATP_bind_1: Conserved 95.9 0.0056 1.2E-07 48.6 2.3 18 1-18 4-21 (238)
229 PF03215 Rad17: Rad17 cell cyc 95.9 0.0068 1.5E-07 53.4 3.0 23 1-23 53-75 (519)
230 cd00071 GMPK Guanosine monopho 95.8 0.0059 1.3E-07 44.2 2.2 18 1-18 7-24 (137)
231 PRK00080 ruvB Holliday junctio 95.8 0.007 1.5E-07 50.2 2.8 22 1-22 59-80 (328)
232 TIGR02880 cbbX_cfxQ probable R 95.8 0.008 1.7E-07 49.0 3.1 17 1-17 66-82 (284)
233 PRK08099 bifunctional DNA-bind 95.8 0.0077 1.7E-07 51.4 3.0 23 1-23 227-249 (399)
234 TIGR00635 ruvB Holliday juncti 95.8 0.0078 1.7E-07 49.2 2.9 21 1-21 38-58 (305)
235 TIGR01526 nadR_NMN_Atrans nico 95.7 0.008 1.7E-07 50.0 2.8 23 1-23 170-192 (325)
236 PF13245 AAA_19: Part of AAA d 95.7 0.0075 1.6E-07 39.2 2.1 17 1-17 18-35 (76)
237 PF07724 AAA_2: AAA domain (Cd 95.7 0.0087 1.9E-07 45.1 2.7 27 1-27 11-43 (171)
238 COG0324 MiaA tRNA delta(2)-iso 95.7 0.028 6.2E-07 46.2 5.8 27 1-27 11-37 (308)
239 PRK13342 recombination factor 95.7 0.0089 1.9E-07 51.2 2.9 25 1-25 44-68 (413)
240 COG1124 DppF ABC-type dipeptid 95.6 0.0067 1.5E-07 48.0 1.9 15 1-15 41-55 (252)
241 PTZ00361 26 proteosome regulat 95.6 0.0095 2.1E-07 51.4 2.9 23 1-23 225-247 (438)
242 PF00910 RNA_helicase: RNA hel 95.6 0.0086 1.9E-07 41.4 2.1 18 1-18 6-23 (107)
243 PRK06620 hypothetical protein; 95.5 0.0097 2.1E-07 46.5 2.5 23 1-23 52-74 (214)
244 COG0714 MoxR-like ATPases [Gen 95.5 0.01 2.2E-07 49.3 2.8 23 1-23 51-73 (329)
245 PF03266 NTPase_1: NTPase; In 95.5 0.0097 2.1E-07 44.7 2.3 17 1-17 7-23 (168)
246 CHL00176 ftsH cell division pr 95.5 0.011 2.5E-07 53.4 3.0 25 1-25 224-248 (638)
247 PRK08903 DnaA regulatory inact 95.4 0.013 2.8E-07 45.9 2.9 29 1-29 50-83 (227)
248 COG2255 RuvB Holliday junction 95.4 0.012 2.6E-07 47.7 2.5 21 1-21 60-80 (332)
249 PF02367 UPF0079: Uncharacteri 95.4 0.013 2.8E-07 41.7 2.4 19 2-20 24-42 (123)
250 PF00308 Bac_DnaA: Bacterial d 95.3 0.35 7.5E-06 37.8 10.7 31 1-31 42-79 (219)
251 TIGR01243 CDC48 AAA family ATP 95.3 0.013 2.9E-07 53.8 3.0 24 1-24 495-518 (733)
252 cd03115 SRP The signal recogni 95.2 0.016 3.4E-07 43.3 2.7 27 1-27 8-39 (173)
253 PLN02796 D-glycerate 3-kinase 95.2 0.013 2.8E-07 49.0 2.3 28 1-28 108-140 (347)
254 COG1116 TauB ABC-type nitrate/ 95.2 0.011 2.5E-07 46.9 1.9 15 1-15 37-51 (248)
255 KOG0733 Nuclear AAA ATPase (VC 95.2 0.056 1.2E-06 48.2 6.3 32 1-32 553-586 (802)
256 TIGR03420 DnaA_homol_Hda DnaA 95.2 0.013 2.8E-07 45.5 2.2 28 1-28 46-78 (226)
257 COG3842 PotA ABC-type spermidi 95.1 0.012 2.6E-07 49.2 1.9 15 1-15 39-53 (352)
258 COG0464 SpoVK ATPases of the A 95.1 0.017 3.6E-07 50.6 2.9 26 1-26 284-309 (494)
259 PRK10646 ADP-binding protein; 95.1 0.016 3.5E-07 42.8 2.3 18 2-19 37-54 (153)
260 PF13401 AAA_22: AAA domain; P 95.1 0.015 3.3E-07 41.0 2.1 17 1-17 12-28 (131)
261 PF05729 NACHT: NACHT domain 95.0 0.015 3.2E-07 42.5 2.0 18 1-18 8-25 (166)
262 PRK14962 DNA polymerase III su 95.0 0.015 3.3E-07 50.7 2.4 19 1-19 44-62 (472)
263 cd01983 Fer4_NifH The Fer4_Nif 95.0 0.024 5.2E-07 37.2 2.9 24 2-25 8-34 (99)
264 TIGR00763 lon ATP-dependent pr 95.0 0.017 3.8E-07 53.4 2.8 23 1-23 355-377 (775)
265 TIGR03015 pepcterm_ATPase puta 95.0 0.017 3.6E-07 46.2 2.4 18 1-18 51-68 (269)
266 cd01918 HprK_C HprK/P, the bif 95.0 0.026 5.5E-07 41.6 3.1 25 1-26 22-46 (149)
267 PRK14961 DNA polymerase III su 95.0 0.017 3.7E-07 48.7 2.5 19 1-19 46-64 (363)
268 PRK11034 clpA ATP-dependent Cl 94.9 0.019 4.1E-07 52.9 2.8 27 1-27 496-524 (758)
269 TIGR01243 CDC48 AAA family ATP 94.9 0.02 4.4E-07 52.6 2.8 24 1-24 220-243 (733)
270 PRK14956 DNA polymerase III su 94.8 0.019 4.1E-07 50.0 2.4 20 1-20 48-67 (484)
271 TIGR03689 pup_AAA proteasome A 94.8 0.019 4.1E-07 50.5 2.3 20 1-20 224-243 (512)
272 KOG1969 DNA replication checkp 94.7 0.023 5E-07 51.5 2.8 24 1-24 334-357 (877)
273 COG3839 MalK ABC-type sugar tr 94.7 0.018 3.9E-07 48.0 1.9 15 1-15 37-51 (338)
274 PRK08084 DNA replication initi 94.7 0.02 4.3E-07 45.3 2.1 26 1-26 53-83 (235)
275 PRK14086 dnaA chromosomal repl 94.7 0.21 4.5E-06 45.0 8.5 31 1-31 322-359 (617)
276 cd01120 RecA-like_NTPases RecA 94.7 0.022 4.8E-07 41.2 2.1 17 1-17 7-23 (165)
277 COG0466 Lon ATP-dependent Lon 94.6 0.023 5E-07 51.3 2.5 27 1-27 358-386 (782)
278 COG1126 GlnQ ABC-type polar am 94.6 0.02 4.4E-07 44.7 1.8 14 1-14 36-49 (240)
279 COG0802 Predicted ATPase or ki 94.6 0.025 5.4E-07 41.5 2.2 18 2-19 34-51 (149)
280 COG1223 Predicted ATPase (AAA+ 94.6 0.12 2.6E-06 41.8 6.2 29 1-29 159-189 (368)
281 PF06068 TIP49: TIP49 C-termin 94.6 0.031 6.6E-07 47.1 3.0 28 1-28 58-89 (398)
282 PRK10733 hflB ATP-dependent me 94.6 0.028 6.1E-07 51.0 3.0 25 1-25 193-217 (644)
283 PHA02544 44 clamp loader, smal 94.6 0.027 5.9E-07 46.2 2.7 22 1-22 51-72 (316)
284 PRK06645 DNA polymerase III su 94.6 0.024 5.2E-07 49.9 2.4 20 1-20 51-70 (507)
285 KOG1970 Checkpoint RAD17-RFC c 94.5 0.024 5.1E-07 49.8 2.3 23 1-23 118-140 (634)
286 PF06309 Torsin: Torsin; Inte 94.5 0.026 5.6E-07 40.3 2.1 17 1-17 61-77 (127)
287 COG1222 RPT1 ATP-dependent 26S 94.5 0.083 1.8E-06 44.3 5.2 32 1-32 193-226 (406)
288 PRK13341 recombination factor 94.4 0.03 6.6E-07 51.4 2.7 26 1-26 60-85 (725)
289 PLN03025 replication factor C 94.3 0.027 5.8E-07 46.6 2.1 17 1-17 42-58 (319)
290 COG1136 SalX ABC-type antimicr 94.3 0.026 5.7E-07 44.4 2.0 15 1-15 39-53 (226)
291 KOG0736 Peroxisome assembly fa 94.3 0.11 2.5E-06 47.5 6.1 32 1-32 713-746 (953)
292 KOG0731 AAA+-type ATPase conta 94.3 0.031 6.8E-07 51.0 2.6 30 1-30 352-383 (774)
293 KOG2004 Mitochondrial ATP-depe 94.3 0.028 6E-07 50.9 2.1 23 1-23 446-468 (906)
294 cd01131 PilT Pilus retraction 94.2 0.031 6.7E-07 43.0 2.2 18 1-18 9-26 (198)
295 COG0378 HypB Ni2+-binding GTPa 94.2 0.039 8.5E-07 42.3 2.7 28 1-28 21-52 (202)
296 TIGR02639 ClpA ATP-dependent C 94.2 0.034 7.4E-07 51.2 2.8 28 1-28 492-521 (731)
297 cd00544 CobU Adenosylcobinamid 94.2 0.043 9.3E-07 41.3 2.9 21 1-21 7-27 (169)
298 PRK00149 dnaA chromosomal repl 94.2 0.77 1.7E-05 39.8 10.9 29 1-29 156-191 (450)
299 PRK14955 DNA polymerase III su 94.2 0.033 7.2E-07 47.5 2.4 20 1-20 46-65 (397)
300 PRK14960 DNA polymerase III su 94.2 0.033 7.2E-07 50.3 2.4 19 1-19 45-63 (702)
301 PRK14958 DNA polymerase III su 94.2 0.033 7.2E-07 49.1 2.4 20 1-20 46-65 (509)
302 PLN03046 D-glycerate 3-kinase; 94.1 0.032 7E-07 47.9 2.2 28 1-28 220-252 (460)
303 KOG0734 AAA+-type ATPase conta 94.1 0.11 2.5E-06 45.7 5.5 24 1-24 345-368 (752)
304 PRK12402 replication factor C 94.1 0.034 7.3E-07 45.9 2.3 18 1-18 44-61 (337)
305 KOG0737 AAA+-type ATPase [Post 94.1 0.037 7.9E-07 46.4 2.4 25 1-25 135-159 (386)
306 PRK10751 molybdopterin-guanine 94.1 0.033 7.2E-07 42.0 2.0 18 1-18 14-31 (173)
307 PRK14957 DNA polymerase III su 94.1 0.035 7.6E-07 49.3 2.4 19 1-19 46-64 (546)
308 PRK09183 transposase/IS protei 94.1 0.054 1.2E-06 43.5 3.3 28 1-28 110-142 (259)
309 PRK14949 DNA polymerase III su 94.0 0.036 7.8E-07 51.7 2.4 20 1-20 46-65 (944)
310 PF13086 AAA_11: AAA domain; P 94.0 0.036 7.9E-07 42.7 2.2 17 1-17 25-41 (236)
311 COG0396 sufC Cysteine desulfur 94.0 0.038 8.2E-07 43.6 2.2 23 1-23 38-60 (251)
312 PRK11331 5-methylcytosine-spec 94.0 0.036 7.9E-07 47.9 2.3 18 1-18 202-219 (459)
313 COG4619 ABC-type uncharacteriz 94.0 0.035 7.6E-07 41.9 1.9 15 1-15 37-51 (223)
314 PRK14964 DNA polymerase III su 93.9 0.037 7.9E-07 48.5 2.3 19 1-19 43-61 (491)
315 PRK12377 putative replication 93.9 0.067 1.4E-06 42.8 3.5 31 1-31 109-144 (248)
316 TIGR00176 mobB molybdopterin-g 93.8 0.042 9.1E-07 40.7 2.1 17 1-17 7-23 (155)
317 cd02034 CooC The accessory pro 93.8 0.063 1.4E-06 37.7 2.9 26 1-26 7-37 (116)
318 KOG0738 AAA+-type ATPase [Post 93.8 0.054 1.2E-06 45.9 2.9 25 1-25 253-277 (491)
319 PRK10787 DNA-binding ATP-depen 93.8 0.048 1E-06 50.5 2.9 23 1-23 357-379 (784)
320 PF13191 AAA_16: AAA ATPase do 93.8 0.041 9E-07 41.0 2.1 18 1-18 32-49 (185)
321 PF01695 IstB_IS21: IstB-like 93.8 0.067 1.4E-06 40.5 3.2 32 1-32 55-91 (178)
322 COG1117 PstB ABC-type phosphat 93.7 0.038 8.2E-07 43.2 1.7 15 1-15 41-55 (253)
323 PRK14969 DNA polymerase III su 93.7 0.045 9.9E-07 48.5 2.4 20 1-20 46-65 (527)
324 PF13555 AAA_29: P-loop contai 93.7 0.053 1.1E-06 33.8 2.0 14 1-14 31-44 (62)
325 cd03292 ABC_FtsE_transporter F 93.6 0.044 9.6E-07 42.3 2.0 17 1-17 35-51 (214)
326 PF01078 Mg_chelatase: Magnesi 93.6 0.046 1E-06 42.4 2.0 18 1-18 30-47 (206)
327 cd03255 ABC_MJ0796_Lo1CDE_FtsE 93.6 0.045 9.7E-07 42.4 2.0 17 1-17 38-54 (218)
328 TIGR00960 3a0501s02 Type II (G 93.6 0.044 9.5E-07 42.4 1.9 17 1-17 37-53 (216)
329 cd01394 radB RadB. The archaea 93.5 0.055 1.2E-06 42.0 2.4 26 1-26 27-57 (218)
330 PRK14963 DNA polymerase III su 93.5 0.045 9.8E-07 48.2 2.1 19 1-19 44-62 (504)
331 COG1855 ATPase (PilT family) [ 93.5 0.046 9.9E-07 47.2 2.0 17 1-17 271-287 (604)
332 PRK15455 PrkA family serine pr 93.5 0.041 8.9E-07 49.0 1.8 18 1-18 111-128 (644)
333 COG1220 HslU ATP-dependent pro 93.5 0.065 1.4E-06 44.7 2.8 23 1-23 58-80 (444)
334 TIGR01166 cbiO cobalt transpor 93.5 0.047 1E-06 41.4 1.9 16 1-16 26-41 (190)
335 COG1219 ClpX ATP-dependent pro 93.5 0.07 1.5E-06 44.2 2.9 25 1-25 105-129 (408)
336 cd03225 ABC_cobalt_CbiO_domain 93.4 0.05 1.1E-06 41.9 2.0 17 1-17 35-51 (211)
337 COG1120 FepC ABC-type cobalami 93.4 0.06 1.3E-06 43.2 2.4 28 1-28 36-67 (258)
338 KOG0651 26S proteasome regulat 93.4 0.13 2.7E-06 42.5 4.3 32 1-32 174-207 (388)
339 TIGR00101 ureG urease accessor 93.4 0.058 1.3E-06 41.6 2.3 18 1-18 9-26 (199)
340 cd03264 ABC_drug_resistance_li 93.4 0.05 1.1E-06 42.0 1.9 16 1-16 33-48 (211)
341 PF03205 MobB: Molybdopterin g 93.4 0.058 1.3E-06 39.2 2.2 17 1-17 8-24 (140)
342 PRK13768 GTPase; Provisional 93.4 0.066 1.4E-06 42.8 2.6 26 1-26 10-40 (253)
343 COG2812 DnaX DNA polymerase II 93.3 0.05 1.1E-06 47.9 2.0 21 1-21 46-66 (515)
344 CHL00206 ycf2 Ycf2; Provisiona 93.3 0.062 1.4E-06 53.7 2.8 28 1-28 1638-1667(2281)
345 cd03269 ABC_putative_ATPase Th 93.3 0.052 1.1E-06 41.8 2.0 17 1-17 34-50 (210)
346 COG4608 AppF ABC-type oligopep 93.3 0.046 1E-06 44.0 1.7 25 2-26 48-76 (268)
347 TIGR02673 FtsE cell division A 93.3 0.053 1.1E-06 41.9 1.9 17 1-17 36-52 (214)
348 PRK13695 putative NTPase; Prov 93.3 0.059 1.3E-06 40.3 2.1 20 1-20 8-30 (174)
349 cd03261 ABC_Org_Solvent_Resist 93.2 0.053 1.2E-06 42.6 1.9 17 1-17 34-50 (235)
350 cd03226 ABC_cobalt_CbiO_domain 93.2 0.053 1.2E-06 41.6 1.9 16 1-16 34-49 (205)
351 PF00005 ABC_tran: ABC transpo 93.2 0.048 1E-06 38.8 1.5 17 1-17 19-35 (137)
352 cd03263 ABC_subfamily_A The AB 93.2 0.055 1.2E-06 42.0 2.0 17 1-17 36-52 (220)
353 cd01130 VirB11-like_ATPase Typ 93.2 0.064 1.4E-06 40.7 2.3 18 1-18 33-50 (186)
354 cd03116 MobB Molybdenum is an 93.2 0.062 1.3E-06 40.0 2.1 17 1-17 9-25 (159)
355 cd03224 ABC_TM1139_LivF_branch 93.2 0.053 1.1E-06 42.1 1.8 17 1-17 34-50 (222)
356 TIGR01618 phage_P_loop phage n 93.2 0.052 1.1E-06 42.6 1.7 28 1-30 20-47 (220)
357 PF10662 PduV-EutP: Ethanolami 93.2 0.056 1.2E-06 39.5 1.8 15 1-15 9-23 (143)
358 PRK07952 DNA replication prote 93.1 0.092 2E-06 41.9 3.1 30 1-30 107-141 (244)
359 cd03219 ABC_Mj1267_LivG_branch 93.1 0.052 1.1E-06 42.6 1.7 17 1-17 34-50 (236)
360 cd03301 ABC_MalK_N The N-termi 93.1 0.059 1.3E-06 41.6 2.0 17 1-17 34-50 (213)
361 KOG0741 AAA+-type ATPase [Post 93.1 0.076 1.7E-06 46.7 2.8 23 1-23 546-568 (744)
362 cd03256 ABC_PhnC_transporter A 93.1 0.058 1.2E-06 42.4 1.9 17 1-17 35-51 (241)
363 cd03258 ABC_MetN_methionine_tr 93.1 0.058 1.3E-06 42.3 2.0 17 1-17 39-55 (233)
364 PRK07994 DNA polymerase III su 93.1 0.058 1.3E-06 48.8 2.1 20 1-20 46-65 (647)
365 cd03262 ABC_HisP_GlnQ_permease 93.1 0.06 1.3E-06 41.5 2.0 17 1-17 34-50 (213)
366 PRK11629 lolD lipoprotein tran 93.1 0.06 1.3E-06 42.3 2.0 17 1-17 43-59 (233)
367 cd03259 ABC_Carb_Solutes_like 93.1 0.06 1.3E-06 41.6 2.0 17 1-17 34-50 (213)
368 cd03293 ABC_NrtD_SsuB_transpor 93.1 0.06 1.3E-06 41.8 1.9 17 1-17 38-54 (220)
369 cd03260 ABC_PstB_phosphate_tra 93.1 0.061 1.3E-06 42.0 2.0 17 1-17 34-50 (227)
370 TIGR02315 ABC_phnC phosphonate 93.0 0.059 1.3E-06 42.5 1.9 17 1-17 36-52 (243)
371 TIGR03608 L_ocin_972_ABC putat 93.0 0.062 1.3E-06 41.2 2.0 17 1-17 32-48 (206)
372 COG1118 CysA ABC-type sulfate/ 93.0 0.058 1.3E-06 44.3 1.8 15 1-15 36-50 (345)
373 cd03235 ABC_Metallic_Cations A 93.0 0.056 1.2E-06 41.8 1.7 16 1-16 33-48 (213)
374 KOG0989 Replication factor C, 93.0 0.073 1.6E-06 43.7 2.3 20 1-20 65-84 (346)
375 cd03230 ABC_DR_subfamily_A Thi 92.9 0.065 1.4E-06 40.1 1.9 17 1-17 34-50 (173)
376 COG4525 TauB ABC-type taurine 92.9 0.063 1.4E-06 41.6 1.8 15 1-15 39-53 (259)
377 cd03223 ABCD_peroxisomal_ALDP 92.9 0.066 1.4E-06 39.9 1.9 17 1-17 35-51 (166)
378 PRK09435 membrane ATPase/prote 92.9 0.067 1.4E-06 44.6 2.1 26 1-26 64-94 (332)
379 cd03229 ABC_Class3 This class 92.9 0.066 1.4E-06 40.2 2.0 16 1-16 34-49 (178)
380 cd03265 ABC_DrrA DrrA is the A 92.9 0.065 1.4E-06 41.6 2.0 17 1-17 34-50 (220)
381 cd03247 ABCC_cytochrome_bd The 92.9 0.066 1.4E-06 40.2 1.9 17 1-17 36-52 (178)
382 TIGR02639 ClpA ATP-dependent C 92.9 0.084 1.8E-06 48.7 2.9 25 1-25 211-245 (731)
383 cd03222 ABC_RNaseL_inhibitor T 92.9 0.063 1.4E-06 40.6 1.8 16 1-16 33-48 (177)
384 cd03296 ABC_CysA_sulfate_impor 92.9 0.065 1.4E-06 42.2 1.9 17 1-17 36-52 (239)
385 TIGR02211 LolD_lipo_ex lipopro 92.9 0.067 1.5E-06 41.5 2.0 17 1-17 39-55 (221)
386 PRK08181 transposase; Validate 92.8 0.12 2.5E-06 41.9 3.3 31 1-31 114-149 (269)
387 PRK10463 hydrogenase nickel in 92.8 0.074 1.6E-06 43.5 2.2 25 1-25 112-140 (290)
388 PF01443 Viral_helicase1: Vira 92.8 0.073 1.6E-06 41.4 2.1 17 1-17 6-22 (234)
389 PRK14493 putative bifunctional 92.8 0.072 1.6E-06 43.2 2.1 17 1-17 9-25 (274)
390 PRK05896 DNA polymerase III su 92.8 0.076 1.6E-06 47.6 2.4 19 1-19 46-64 (605)
391 PRK11124 artP arginine transpo 92.8 0.069 1.5E-06 42.1 2.0 17 1-17 36-52 (242)
392 cd01124 KaiC KaiC is a circadi 92.8 0.079 1.7E-06 39.7 2.2 26 1-26 7-37 (187)
393 TIGR03410 urea_trans_UrtE urea 92.8 0.066 1.4E-06 41.8 1.9 17 1-17 34-50 (230)
394 PRK08116 hypothetical protein; 92.8 0.11 2.4E-06 42.0 3.1 30 1-30 122-156 (268)
395 KOG2028 ATPase related to the 92.8 0.069 1.5E-06 45.0 2.0 24 1-24 170-196 (554)
396 PRK12724 flagellar biosynthesi 92.8 0.066 1.4E-06 46.0 1.9 27 1-27 231-263 (432)
397 cd03215 ABC_Carb_Monos_II This 92.7 0.07 1.5E-06 40.3 1.9 17 1-17 34-50 (182)
398 KOG3062 RNA polymerase II elon 92.7 0.87 1.9E-05 36.0 7.8 18 1-18 9-26 (281)
399 PRK14250 phosphate ABC transpo 92.7 0.07 1.5E-06 42.2 1.9 17 1-17 37-53 (241)
400 PRK15177 Vi polysaccharide exp 92.7 0.071 1.5E-06 41.4 1.9 16 1-16 21-36 (213)
401 PRK14951 DNA polymerase III su 92.7 0.078 1.7E-06 47.8 2.4 19 1-19 46-64 (618)
402 PHA03133 thymidine kinase; Pro 92.7 4.4 9.6E-05 34.2 12.4 26 87-115 195-220 (368)
403 COG3911 Predicted ATPase [Gene 92.7 0.077 1.7E-06 39.2 1.9 21 1-22 17-37 (183)
404 cd03218 ABC_YhbG The ABC trans 92.7 0.072 1.6E-06 41.7 2.0 17 1-17 34-50 (232)
405 cd03246 ABCC_Protease_Secretio 92.7 0.076 1.6E-06 39.7 2.0 17 1-17 36-52 (173)
406 TIGR01978 sufC FeS assembly AT 92.7 0.07 1.5E-06 42.0 1.9 16 1-16 34-49 (243)
407 TIGR03864 PQQ_ABC_ATP ABC tran 92.7 0.073 1.6E-06 41.8 2.0 17 1-17 35-51 (236)
408 PRK13541 cytochrome c biogenes 92.7 0.074 1.6E-06 40.6 2.0 17 1-17 34-50 (195)
409 PRK06526 transposase; Provisio 92.6 0.077 1.7E-06 42.6 2.0 17 1-17 106-122 (254)
410 PRK04296 thymidine kinase; Pro 92.6 0.076 1.6E-06 40.5 1.9 17 1-17 10-26 (190)
411 PRK14954 DNA polymerase III su 92.6 0.083 1.8E-06 47.7 2.4 20 1-20 46-65 (620)
412 cd03257 ABC_NikE_OppD_transpor 92.6 0.073 1.6E-06 41.4 1.9 17 1-17 39-55 (228)
413 cd03297 ABC_ModC_molybdenum_tr 92.6 0.076 1.6E-06 41.1 1.9 17 1-17 31-47 (214)
414 KOG0741 AAA+-type ATPase [Post 92.6 0.42 9.1E-06 42.3 6.5 35 1-36 264-301 (744)
415 TIGR00064 ftsY signal recognit 92.6 0.08 1.7E-06 42.9 2.1 27 1-27 80-111 (272)
416 cd03234 ABCG_White The White s 92.5 0.077 1.7E-06 41.4 1.9 17 1-17 41-57 (226)
417 cd03266 ABC_NatA_sodium_export 92.5 0.078 1.7E-06 41.1 1.9 16 1-16 39-54 (218)
418 PRK11264 putative amino-acid A 92.5 0.078 1.7E-06 42.0 2.0 17 1-17 37-53 (250)
419 cd03238 ABC_UvrA The excision 92.5 0.077 1.7E-06 40.1 1.8 14 1-14 29-42 (176)
420 cd03216 ABC_Carb_Monos_I This 92.5 0.082 1.8E-06 39.2 2.0 16 1-16 34-49 (163)
421 cd03228 ABCC_MRP_Like The MRP 92.5 0.083 1.8E-06 39.4 2.0 17 1-17 36-52 (171)
422 PRK14952 DNA polymerase III su 92.5 0.087 1.9E-06 47.2 2.4 20 1-20 43-62 (584)
423 PRK10744 pstB phosphate transp 92.5 0.078 1.7E-06 42.4 1.9 17 1-17 47-63 (260)
424 COG1123 ATPase components of v 92.5 0.075 1.6E-06 46.9 1.9 17 1-17 325-341 (539)
425 cd03254 ABCC_Glucan_exporter_l 92.5 0.08 1.7E-06 41.3 1.9 17 1-17 37-53 (229)
426 cd03232 ABC_PDR_domain2 The pl 92.5 0.081 1.8E-06 40.3 1.9 15 1-15 41-55 (192)
427 PRK11248 tauB taurine transpor 92.5 0.08 1.7E-06 42.3 1.9 17 1-17 35-51 (255)
428 PRK10247 putative ABC transpor 92.5 0.082 1.8E-06 41.3 2.0 16 1-16 41-56 (225)
429 PRK10416 signal recognition pa 92.5 0.084 1.8E-06 43.8 2.1 26 1-26 122-152 (318)
430 PRK13407 bchI magnesium chelat 92.5 0.095 2.1E-06 43.7 2.5 17 1-17 37-53 (334)
431 PRK06835 DNA replication prote 92.4 0.12 2.6E-06 43.0 3.1 31 1-31 191-226 (329)
432 cd03251 ABCC_MsbA MsbA is an e 92.4 0.082 1.8E-06 41.4 2.0 17 1-17 36-52 (234)
433 cd03268 ABC_BcrA_bacitracin_re 92.4 0.084 1.8E-06 40.6 2.0 16 1-16 34-49 (208)
434 PRK14247 phosphate ABC transpo 92.4 0.081 1.8E-06 41.9 1.9 17 1-17 37-53 (250)
435 PRK14267 phosphate ABC transpo 92.4 0.082 1.8E-06 42.0 1.9 17 1-17 38-54 (253)
436 PRK10584 putative ABC transpor 92.4 0.085 1.8E-06 41.2 2.0 17 1-17 44-60 (228)
437 COG1122 CbiO ABC-type cobalt t 92.4 0.078 1.7E-06 42.1 1.7 15 1-15 38-52 (235)
438 PRK11701 phnK phosphonate C-P 92.4 0.083 1.8E-06 42.1 2.0 17 1-17 40-56 (258)
439 PRK13540 cytochrome c biogenes 92.4 0.086 1.9E-06 40.4 2.0 16 1-16 35-50 (200)
440 cd03221 ABCF_EF-3 ABCF_EF-3 E 92.3 0.081 1.8E-06 38.5 1.7 17 1-17 34-50 (144)
441 PRK14241 phosphate transporter 92.3 0.084 1.8E-06 42.1 2.0 16 1-16 38-53 (258)
442 TIGR02323 CP_lyasePhnK phospho 92.3 0.084 1.8E-06 41.9 1.9 17 1-17 37-53 (253)
443 PRK14242 phosphate transporter 92.3 0.086 1.9E-06 41.9 2.0 16 1-16 40-55 (253)
444 PRK10771 thiQ thiamine transpo 92.3 0.083 1.8E-06 41.4 1.9 17 1-17 33-49 (232)
445 cd03214 ABC_Iron-Siderophores_ 92.3 0.089 1.9E-06 39.6 2.0 17 1-17 33-49 (180)
446 KOG0736 Peroxisome assembly fa 92.3 0.11 2.5E-06 47.5 2.9 26 1-26 439-464 (953)
447 PRK10908 cell division protein 92.3 0.087 1.9E-06 41.0 2.0 17 1-17 36-52 (222)
448 COG1224 TIP49 DNA helicase TIP 92.3 0.12 2.5E-06 43.5 2.7 18 1-18 73-90 (450)
449 PRK08691 DNA polymerase III su 92.3 0.094 2E-06 47.8 2.4 20 1-20 46-65 (709)
450 TIGR02770 nickel_nikD nickel i 92.3 0.084 1.8E-06 41.4 1.9 17 1-17 20-36 (230)
451 TIGR02237 recomb_radB DNA repa 92.3 0.095 2.1E-06 40.3 2.1 26 1-26 20-50 (209)
452 cd03114 ArgK-like The function 92.3 0.097 2.1E-06 38.4 2.1 25 1-25 7-36 (148)
453 PF00448 SRP54: SRP54-type pro 92.3 0.099 2.1E-06 40.2 2.2 27 1-27 9-40 (196)
454 PF01926 MMR_HSR1: 50S ribosom 92.2 0.1 2.2E-06 36.1 2.1 15 1-15 7-21 (116)
455 cd03295 ABC_OpuCA_Osmoprotecti 92.2 0.09 1.9E-06 41.5 2.0 17 1-17 35-51 (242)
456 TIGR03005 ectoine_ehuA ectoine 92.2 0.087 1.9E-06 41.8 1.9 17 1-17 34-50 (252)
457 PRK13531 regulatory ATPase Rav 92.2 0.09 1.9E-06 46.0 2.0 18 1-18 47-64 (498)
458 PF08477 Miro: Miro-like prote 92.2 0.11 2.4E-06 35.8 2.2 16 1-16 7-22 (119)
459 cd03252 ABCC_Hemolysin The ABC 92.2 0.09 2E-06 41.3 1.9 17 1-17 36-52 (237)
460 cd03233 ABC_PDR_domain1 The pl 92.2 0.08 1.7E-06 40.7 1.6 17 1-17 41-57 (202)
461 TIGR03771 anch_rpt_ABC anchore 92.2 0.091 2E-06 41.0 1.9 17 1-17 14-30 (223)
462 cd03244 ABCC_MRP_domain2 Domai 92.2 0.094 2E-06 40.7 2.0 16 1-16 38-53 (221)
463 TIGR01184 ntrCD nitrate transp 92.1 0.093 2E-06 41.2 2.0 17 1-17 19-35 (230)
464 COG4618 ArpD ABC-type protease 92.1 0.081 1.8E-06 46.2 1.7 27 1-27 370-400 (580)
465 TIGR01277 thiQ thiamine ABC tr 92.1 0.093 2E-06 40.6 1.9 17 1-17 32-48 (213)
466 COG3840 ThiQ ABC-type thiamine 92.1 0.094 2E-06 40.2 1.8 15 1-15 33-47 (231)
467 PRK13538 cytochrome c biogenes 92.1 0.094 2E-06 40.3 1.9 17 1-17 35-51 (204)
468 PRK14274 phosphate ABC transpo 92.1 0.094 2E-06 41.9 2.0 17 1-17 46-62 (259)
469 PRK09493 glnQ glutamine ABC tr 92.1 0.093 2E-06 41.3 1.9 17 1-17 35-51 (240)
470 PRK13648 cbiO cobalt transport 92.1 0.093 2E-06 42.2 2.0 17 1-17 43-59 (269)
471 PRK00411 cdc6 cell division co 92.1 0.12 2.6E-06 43.7 2.7 17 1-17 63-79 (394)
472 cd03249 ABC_MTABC3_MDL1_MDL2 M 92.1 0.095 2E-06 41.2 1.9 17 1-17 37-53 (238)
473 cd03298 ABC_ThiQ_thiamine_tran 92.1 0.096 2.1E-06 40.4 1.9 17 1-17 32-48 (211)
474 PRK14255 phosphate ABC transpo 92.1 0.094 2E-06 41.6 1.9 16 1-16 39-54 (252)
475 PRK14256 phosphate ABC transpo 92.0 0.097 2.1E-06 41.6 2.0 17 1-17 38-54 (252)
476 cd03250 ABCC_MRP_domain1 Domai 92.0 0.098 2.1E-06 40.1 1.9 17 1-17 39-55 (204)
477 PRK11300 livG leucine/isoleuci 92.0 0.092 2E-06 41.7 1.8 17 1-17 39-55 (255)
478 cd01128 rho_factor Transcripti 92.0 0.1 2.2E-06 41.8 2.1 19 1-19 24-42 (249)
479 PRK10895 lipopolysaccharide AB 92.0 0.097 2.1E-06 41.2 2.0 17 1-17 37-53 (241)
480 PRK14240 phosphate transporter 92.0 0.096 2.1E-06 41.5 1.9 15 1-15 37-51 (250)
481 cd03245 ABCC_bacteriocin_expor 92.0 0.098 2.1E-06 40.5 2.0 16 1-16 38-53 (220)
482 cd03237 ABC_RNaseL_inhibitor_d 92.0 0.097 2.1E-06 41.7 1.9 17 1-17 33-49 (246)
483 PF07015 VirC1: VirC1 protein; 92.0 0.11 2.4E-06 41.0 2.2 25 2-26 11-40 (231)
484 PRK14248 phosphate ABC transpo 92.0 0.098 2.1E-06 42.0 2.0 16 1-16 55-70 (268)
485 TIGR01189 ccmA heme ABC export 92.0 0.1 2.2E-06 39.9 2.0 17 1-17 34-50 (198)
486 TIGR02324 CP_lyasePhnL phospho 92.0 0.099 2.1E-06 40.7 1.9 17 1-17 42-58 (224)
487 cd03248 ABCC_TAP TAP, the Tran 92.0 0.1 2.2E-06 40.7 2.0 17 1-17 48-64 (226)
488 PRK11247 ssuB aliphatic sulfon 92.0 0.099 2.1E-06 41.9 2.0 17 1-17 46-62 (257)
489 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 92.0 0.097 2.1E-06 40.9 1.9 16 1-16 56-71 (224)
490 cd00880 Era_like Era (E. coli 91.9 0.097 2.1E-06 37.1 1.7 16 1-16 4-19 (163)
491 PRK14261 phosphate ABC transpo 91.9 0.099 2.2E-06 41.5 1.9 15 1-15 40-54 (253)
492 cd03369 ABCC_NFT1 Domain 2 of 91.9 0.1 2.3E-06 40.1 2.0 16 1-16 42-57 (207)
493 PF03308 ArgK: ArgK protein; 91.9 0.11 2.4E-06 41.7 2.1 17 1-17 37-53 (266)
494 TIGR00602 rad24 checkpoint pro 91.9 0.069 1.5E-06 48.3 1.1 21 1-21 118-138 (637)
495 TIGR00972 3a0107s01c2 phosphat 91.9 0.1 2.2E-06 41.3 1.9 17 1-17 35-51 (247)
496 PRK05642 DNA replication initi 91.9 0.15 3.2E-06 40.3 2.8 29 1-29 53-86 (234)
497 PRK13543 cytochrome c biogenes 91.9 0.1 2.2E-06 40.4 1.9 16 1-16 45-60 (214)
498 PRK14088 dnaA chromosomal repl 91.9 0.15 3.2E-06 44.2 3.0 31 1-31 138-175 (440)
499 PRK10575 iron-hydroxamate tran 91.9 0.092 2E-06 42.1 1.7 17 1-17 45-61 (265)
500 PRK14251 phosphate ABC transpo 91.9 0.1 2.3E-06 41.3 2.0 17 1-17 38-54 (251)
No 1
>PLN02199 shikimate kinase
Probab=100.00 E-value=5.1e-32 Score=217.07 Aligned_cols=190 Identities=74% Similarity=1.135 Sum_probs=164.6
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHHHHHhCCCCHHHHHHHhcchhhHHHHHHHHHHHhccCCcEEEeCCceeeCHhh
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFREKETEVLQKLSLMRQLVVSTGGGAVTRPIN 80 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~~~~~~g~~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~vi~~g~~~v~~~~~ 80 (193)
+|||||||+++.||+.+|++++|+|.++++...|.++.++|..+|+..|+..|..++.++....++||++|+|.++.+.+
T Consensus 110 ~~GSGKSTVgr~LA~~Lg~~fIDtD~lIe~~~~G~sI~eIf~~~GE~~FR~~E~e~L~~L~~~~~~VIStGGG~V~~~~n 189 (303)
T PLN02199 110 MMGSGKTTVGKLMSKVLGYTFFDCDTLIEQAMNGTSVAEIFVHHGENFFRGKETDALKKLSSRYQVVVSTGGGAVIRPIN 189 (303)
T ss_pred CCCCCHHHHHHHHHHHhCCCEEehHHHHHHHhcCCCHHHHHHHhCHHHHHHHHHHHHHHHHhcCCEEEECCCcccCCHHH
Confidence 68999999999999999999999999998863389999999999999999999999999876678899999999999999
Q ss_pred HHhccCCeEEEEECCHHHHHHHHhccCCCCCCccccCCCCChhHHHHHHHHHHHHHHHHHHhhccceeechhhhhhcccc
Q 029455 81 WRYMQKGISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVSLENIAVKLGHK 160 (193)
Q Consensus 81 ~~~l~~~~vV~L~~~~~~~~~Rl~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~r~~~y~~~~~~i~~~~~~~~~~~i 160 (193)
|..++.+.+|||++|++++.+|+.......||+... .+.+.|.+..+.+.+++.+|.+.|..|+.+|+.++++.+...=
T Consensus 190 ~~~L~~G~vV~Ldas~E~l~~RL~~~~~~~RPLL~~-~~~d~~~~~~~~L~~L~~~R~plY~~Ad~~V~~~~~~~~~~~~ 268 (303)
T PLN02199 190 WKYMHKGISIWLDVPLEALAHRIAAVGTDSRPLLHD-ESGDAYSVAFKRLSAIWDERGEAYTNANARVSLENIAAKRGYK 268 (303)
T ss_pred HHHHhCCeEEEEECCHHHHHHHHhhcCCCCCCcCCC-CCcchhhhHHHHHHHHHHHHHHHHHhCCEEEeccccccccccc
Confidence 988877899999999999999998532356998753 1123333345788999999999999999999766666666666
Q ss_pred cCCCCCHHHHHHHHHHHHHhhhcccchhhhc
Q 029455 161 DVSSLTPVTIAIEALEQIEGFLKEEDDMAIA 191 (193)
Q Consensus 161 Dt~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 191 (193)
||++++|++++.+|++.+.+++.++++|+++
T Consensus 269 ~td~~s~~ei~~eIl~~l~~~l~~~~~~~~~ 299 (303)
T PLN02199 269 NVSDLTPTEIAIEAFEQVLSFLEKEETMEIP 299 (303)
T ss_pred ccCCCCHHHHHHHHHHHHHHHHhhccccccC
Confidence 7999999999999999999999999999886
No 2
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=100.00 E-value=4.2e-32 Score=201.92 Aligned_cols=159 Identities=42% Similarity=0.616 Sum_probs=141.0
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHHHHHhCCCCHHHHHHHhcchhhHHHHHHHHHHHhccCCcEEEeCCceeeCHhh
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFREKETEVLQKLSLMRQLVVSTGGGAVTRPIN 80 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~~~~~~g~~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~vi~~g~~~v~~~~~ 80 (193)
|||||||||++.||+.|+++|+|+|.++++.. |+++.++|..+|+..||.+|.+++.++...++.||++|+|+++.+++
T Consensus 10 ~mGaGKSTIGr~LAk~L~~~F~D~D~~Ie~~~-g~sI~eIF~~~GE~~FR~~E~~vl~~l~~~~~~ViaTGGG~v~~~en 88 (172)
T COG0703 10 FMGAGKSTIGRALAKALNLPFIDTDQEIEKRT-GMSIAEIFEEEGEEGFRRLETEVLKELLEEDNAVIATGGGAVLSEEN 88 (172)
T ss_pred CCCCCHhHHHHHHHHHcCCCcccchHHHHHHH-CcCHHHHHHHHhHHHHHHHHHHHHHHHhhcCCeEEECCCccccCHHH
Confidence 69999999999999999999999999999999 99999999999999999999999999988778999999999999999
Q ss_pred HHhccC-CeEEEEECCHHHHHHHHhccCCCCCCccccCCCCChhHHHHHHHHHHHHHHHHHHhh-ccceeechhhhhhcc
Q 029455 81 WRYMQK-GISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYAN-ANARVSLENIAVKLG 158 (193)
Q Consensus 81 ~~~l~~-~~vV~L~~~~~~~~~Rl~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~r~~~y~~-~~~~i~~~~~~~~~~ 158 (193)
+..++. +.+|||++|.+++.+|+..+ ..||.... .+ ..+.+.+++.+|.++|+. ++.++
T Consensus 89 r~~l~~~g~vv~L~~~~e~l~~Rl~~~--~~RPll~~---~~----~~~~l~~L~~~R~~~Y~e~a~~~~---------- 149 (172)
T COG0703 89 RNLLKKRGIVVYLDAPFETLYERLQRD--RKRPLLQT---ED----PREELEELLEERQPLYREVADFII---------- 149 (172)
T ss_pred HHHHHhCCeEEEEeCCHHHHHHHhccc--cCCCcccC---CC----hHHHHHHHHHHHHHHHHHhCcEEe----------
Confidence 999984 79999999999999999953 57998776 32 246789999999999998 66665
Q ss_pred cccCCCCCHHHHHHHHHHHHHhhh
Q 029455 159 HKDVSSLTPVTIAIEALEQIEGFL 182 (193)
Q Consensus 159 ~iDt~~~~~~~~~~~i~~~~~~~~ 182 (193)
++.+.+ ++++++|+..+...+
T Consensus 150 --~~~~~~-~~v~~~i~~~l~~~~ 170 (172)
T COG0703 150 --DTDDRS-EEVVEEILEALEGSL 170 (172)
T ss_pred --cCCCCc-HHHHHHHHHHHHHhc
Confidence 665555 999999998887654
No 3
>PRK13948 shikimate kinase; Provisional
Probab=99.97 E-value=8.1e-29 Score=188.36 Aligned_cols=159 Identities=34% Similarity=0.519 Sum_probs=140.2
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHHHHHhCCCCHHHHHHHhcchhhHHHHHHHHHHHhccCCcEEEeCCceeeCHhh
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFREKETEVLQKLSLMRQLVVSTGGGAVTRPIN 80 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~~~~~~g~~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~vi~~g~~~v~~~~~ 80 (193)
+|||||||+++.||+.||++++|+|.++++.+ |.++.++|...|+..|++.|..++..+....++||++|+|+++.+++
T Consensus 18 ~~GsGKSTvg~~La~~lg~~~iD~D~~ie~~~-g~si~~if~~~Ge~~fR~~E~~~l~~l~~~~~~VIa~GgG~v~~~~n 96 (182)
T PRK13948 18 FMGTGKSRIGWELSRALMLHFIDTDRYIERVT-GKSIPEIFRHLGEAYFRRCEAEVVRRLTRLDYAVISLGGGTFMHEEN 96 (182)
T ss_pred CCCCCHHHHHHHHHHHcCCCEEECCHHHHHHH-hCCHHHHHHHhCHHHHHHHHHHHHHHHHhcCCeEEECCCcEEcCHHH
Confidence 69999999999999999999999999999998 99999999999999999999999988876678899999999999999
Q ss_pred HHhccC-CeEEEEECCHHHHHHHHhccCCCCCCccccCCCCChhHHHHHHHHHHHHHHHHHHhhccceeechhhhhhccc
Q 029455 81 WRYMQK-GISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVSLENIAVKLGH 159 (193)
Q Consensus 81 ~~~l~~-~~vV~L~~~~~~~~~Rl~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~r~~~y~~~~~~i~~~~~~~~~~~ 159 (193)
+..++. +.+|||++|++++.+|+.. +.||.... .+ ..+.+.+++.+|.+.|..++.+|
T Consensus 97 ~~~l~~~g~vV~L~~~~e~l~~Rl~~---~~RPll~~---~~----~~~~l~~l~~~R~~~Y~~a~~~i----------- 155 (182)
T PRK13948 97 RRKLLSRGPVVVLWASPETIYERTRP---GDRPLLQV---ED----PLGRIRTLLNEREPVYRQATIHV----------- 155 (182)
T ss_pred HHHHHcCCeEEEEECCHHHHHHHhcC---CCCCCCCC---CC----hHHHHHHHHHHHHHHHHhCCEEE-----------
Confidence 887764 8999999999999999953 46887753 22 24678899999999998788876
Q ss_pred ccCCCCCHHHHHHHHHHHHHhhh
Q 029455 160 KDVSSLTPVTIAIEALEQIEGFL 182 (193)
Q Consensus 160 iDt~~~~~~~~~~~i~~~~~~~~ 182 (193)
||++.+++++++.|.+.+...+
T Consensus 156 -~t~~~~~~ei~~~i~~~l~~~~ 177 (182)
T PRK13948 156 -STDGRRSEEVVEEIVEKLWAWA 177 (182)
T ss_pred -ECCCCCHHHHHHHHHHHHHHHh
Confidence 7889999999999999987644
No 4
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=99.96 E-value=1.5e-28 Score=183.51 Aligned_cols=156 Identities=39% Similarity=0.562 Sum_probs=131.0
Q ss_pred CCCchHHHHHHHHHhcCCcEeechHHHHHHhCCCCHHHHHHHhcchhhHHHHHHHHHHHhccCCcEEEeCCceeeCHhhH
Q 029455 2 MGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFREKETEVLQKLSLMRQLVVSTGGGAVTRPINW 81 (193)
Q Consensus 2 ~GsGKSTia~~La~~lg~~~~d~d~~~~~~~~g~~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~vi~~g~~~v~~~~~~ 81 (193)
|||||||+|+.||+.||++|+|+|.++.+.. |.++.+++...|+..|+..|..++.++....++||+||+|++..++++
T Consensus 1 ~GsGKStvg~~lA~~L~~~fiD~D~~i~~~~-g~si~~i~~~~G~~~fr~~E~~~l~~l~~~~~~VIa~GGG~~~~~~~~ 79 (158)
T PF01202_consen 1 MGSGKSTVGKLLAKRLGRPFIDLDDEIEERT-GMSISEIFAEEGEEAFRELESEALRELLKENNCVIACGGGIVLKEENR 79 (158)
T ss_dssp TTSSHHHHHHHHHHHHTSEEEEHHHHHHHHH-TSHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSEEEEE-TTGGGSHHHH
T ss_pred CCCcHHHHHHHHHHHhCCCccccCHHHHHHh-CCcHHHHHHcCChHHHHHHHHHHHHHHhccCcEEEeCCCCCcCcHHHH
Confidence 7999999999999999999999999999999 999999999999999999999999998877789999999999999999
Q ss_pred Hhcc-CCeEEEEECCHHHHHHHHhccCCCCCCccccCCCCChhHHHHHHHHHHHHHHHHHHhh-ccceeechhhhhhccc
Q 029455 82 RYMQ-KGISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYAN-ANARVSLENIAVKLGH 159 (193)
Q Consensus 82 ~~l~-~~~vV~L~~~~~~~~~Rl~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~r~~~y~~-~~~~i~~~~~~~~~~~ 159 (193)
+.|+ .+.+|||++|++++.+|+..+. .||.... . .....+.+.+.+|.+.|.. ++.+
T Consensus 80 ~~L~~~g~vI~L~~~~~~l~~Rl~~~~--~Rp~l~~---~----~~~~~~~~~~~~R~~~Y~~~a~~~------------ 138 (158)
T PF01202_consen 80 ELLKENGLVIYLDADPEELAERLRARD--NRPLLKG---K----MEHEEILELLFEREPLYEQAADIV------------ 138 (158)
T ss_dssp HHHHHHSEEEEEE--HHHHHHHHHHHC--TSGGTCS---H----HHHHHHHHHHHHHHHHHHHHSSEE------------
T ss_pred HHHHhCCEEEEEeCCHHHHHHHHhCCC--CCCCCCC---C----ChHHHHHHHHHHHHHHHHhcCeEE------------
Confidence 9888 4899999999999999998753 4887765 1 1122344555589999998 5555
Q ss_pred ccCCCCCHHHHHHHHHHHHH
Q 029455 160 KDVSSLTPVTIAIEALEQIE 179 (193)
Q Consensus 160 iDt~~~~~~~~~~~i~~~~~ 179 (193)
+|++..+++++++.|++.++
T Consensus 139 v~~~~~~~~~i~~~i~~~l~ 158 (158)
T PF01202_consen 139 VDTDGSPPEEIAEEILEFLK 158 (158)
T ss_dssp EETSSCHHHHHHHHHHHHH-
T ss_pred EeCCCCCHHHHHHHHHHHhC
Confidence 47887888999999998874
No 5
>PRK13949 shikimate kinase; Provisional
Probab=99.96 E-value=1.9e-27 Score=179.30 Aligned_cols=159 Identities=34% Similarity=0.495 Sum_probs=135.8
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHHHHHhCCCCHHHHHHHhcchhhHHHHHHHHHHHhccCCcEEEeCCceeeCHhh
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFREKETEVLQKLSLMRQLVVSTGGGAVTRPIN 80 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~~~~~~g~~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~vi~~g~~~v~~~~~ 80 (193)
||||||||+++.||+.+|++++|+|.+++... |.++.+++...|+..|++.+..++.++....++||++|+|++..+++
T Consensus 9 ~~GsGKstl~~~La~~l~~~~id~D~~i~~~~-~~~~~~~~~~~g~~~fr~~e~~~l~~l~~~~~~vis~Ggg~~~~~~~ 87 (169)
T PRK13949 9 YMGAGKTTLGKALARELGLSFIDLDFFIENRF-HKTVGDIFAERGEAVFRELERNMLHEVAEFEDVVISTGGGAPCFFDN 87 (169)
T ss_pred CCCCCHHHHHHHHHHHcCCCeecccHHHHHHH-CccHHHHHHHhCHHHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHH
Confidence 69999999999999999999999999998888 88999999999999999999888888765567899999999999988
Q ss_pred HHhccC-CeEEEEECCHHHHHHHHhccCCCCCCccccCCCCChhHHHHHHHHHHHHHHHHHHhhccceeechhhhhhccc
Q 029455 81 WRYMQK-GISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVSLENIAVKLGH 159 (193)
Q Consensus 81 ~~~l~~-~~vV~L~~~~~~~~~Rl~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~r~~~y~~~~~~i~~~~~~~~~~~ 159 (193)
+..++. +++|||++|++++.+|+..+ .+.||.....+ .+ +..+.+.+++.+|.+.|++|+.+|
T Consensus 88 ~~~l~~~~~vi~L~~~~~~~~~Ri~~~-~~~RP~~~~~~-~~---~~~~~i~~l~~~R~~~Y~~ad~~i----------- 151 (169)
T PRK13949 88 MELMNASGTTVYLKVSPEVLFVRLRLA-KQQRPLLKGKS-DE---ELLDFIIEALEKRAPFYRQAKIIF----------- 151 (169)
T ss_pred HHHHHhCCeEEEEECCHHHHHHHHhcC-CCCCCCCCCCC-hH---HHHHHHHHHHHHHHHHHHhCCEEE-----------
Confidence 888874 89999999999999999853 14688764311 11 235578889999999999988765
Q ss_pred ccCCCCCHHHHHHHHHHH
Q 029455 160 KDVSSLTPVTIAIEALEQ 177 (193)
Q Consensus 160 iDt~~~~~~~~~~~i~~~ 177 (193)
|+++++++++++.|++.
T Consensus 152 -d~~~~~~~e~~~~I~~~ 168 (169)
T PRK13949 152 -NADKLEDESQIEQLVQR 168 (169)
T ss_pred -ECCCCCHHHHHHHHHHh
Confidence 88999999999999875
No 6
>PRK13946 shikimate kinase; Provisional
Probab=99.95 E-value=2.7e-26 Score=175.27 Aligned_cols=164 Identities=40% Similarity=0.636 Sum_probs=140.3
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHHHHHhCCCCHHHHHHHhcchhhHHHHHHHHHHHhccCCcEEEeCCceeeCHhh
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFREKETEVLQKLSLMRQLVVSTGGGAVTRPIN 80 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~~~~~~g~~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~vi~~g~~~v~~~~~ 80 (193)
+|||||||+|+.||++||++++|+|.+++... |.++.+++..+|+..|+..+..++..+...+.+||++|++.++.+.+
T Consensus 18 ~~GsGKsti~~~LA~~Lg~~~id~D~~~~~~~-g~~~~e~~~~~ge~~~~~~e~~~l~~l~~~~~~Vi~~ggg~~~~~~~ 96 (184)
T PRK13946 18 LMGAGKSTVGRRLATMLGLPFLDADTEIERAA-RMTIAEIFAAYGEPEFRDLERRVIARLLKGGPLVLATGGGAFMNEET 96 (184)
T ss_pred CCCCCHHHHHHHHHHHcCCCeECcCHHHHHHh-CCCHHHHHHHHCHHHHHHHHHHHHHHHHhcCCeEEECCCCCcCCHHH
Confidence 69999999999999999999999999988887 98988999899999999988888888876667899998888888888
Q ss_pred HHhcc-CCeEEEEECCHHHHHHHHhccCCCCCCccccCCCCChhHHHHHHHHHHHHHHHHHHhhccceeechhhhhhccc
Q 029455 81 WRYMQ-KGISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVSLENIAVKLGH 159 (193)
Q Consensus 81 ~~~l~-~~~vV~L~~~~~~~~~Rl~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~r~~~y~~~~~~i~~~~~~~~~~~ 159 (193)
+..+. .+++|||++|++++.+|+..+ ..||+... .+ ..+.+.+++..|.+.|..+|.++
T Consensus 97 r~~l~~~~~~v~L~a~~e~~~~Rl~~r--~~rp~~~~---~~----~~~~i~~~~~~R~~~y~~~dl~i----------- 156 (184)
T PRK13946 97 RAAIAEKGISVWLKADLDVLWERVSRR--DTRPLLRT---AD----PKETLARLMEERYPVYAEADLTV----------- 156 (184)
T ss_pred HHHHHcCCEEEEEECCHHHHHHHhcCC--CCCCcCCC---CC----hHHHHHHHHHHHHHHHHhCCEEE-----------
Confidence 88876 489999999999999999875 35775542 11 24667888888999888777765
Q ss_pred ccCCCCCHHHHHHHHHHHHHhhhcccc
Q 029455 160 KDVSSLTPVTIAIEALEQIEGFLKEED 186 (193)
Q Consensus 160 iDt~~~~~~~~~~~i~~~~~~~~~~~~ 186 (193)
|++..+++++++.|.+.+...+++++
T Consensus 157 -~~~~~~~~~~~~~i~~~i~~~~~~~~ 182 (184)
T PRK13946 157 -ASRDVPKEVMADEVIEALAAYLEKEE 182 (184)
T ss_pred -ECCCCCHHHHHHHHHHHHHHhhcccc
Confidence 78899999999999999999887765
No 7
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=99.95 E-value=2.9e-26 Score=200.41 Aligned_cols=157 Identities=32% Similarity=0.499 Sum_probs=138.9
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHHHHHhCCCCHHHHHHHhcchhhHHHHHHHHHHHhccCCcEEEeCCceeeCHhh
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFREKETEVLQKLSLMRQLVVSTGGGAVTRPIN 80 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~~~~~~g~~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~vi~~g~~~v~~~~~ 80 (193)
||||||||+++.||++||++|+|+|.++++.. |+++.++|...|+..||+.|.+++.++....++||++|+|+++.+++
T Consensus 14 ~~GaGKttvg~~LA~~L~~~fiD~D~~ie~~~-g~si~eif~~~Ge~~FR~~E~~~l~~~~~~~~~VIs~GGG~v~~~~n 92 (542)
T PRK14021 14 MMGAGKTRVGKEVAQMMRLPFADADVEIEREI-GMSIPSYFEEYGEPAFREVEADVVADMLEDFDGIFSLGGGAPMTPST 92 (542)
T ss_pred CCCCCHHHHHHHHHHHhCCCEEEchHHHHHHH-CcCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEECCCchhCCHHH
Confidence 69999999999999999999999999999998 99999999999999999999999998876567899999999999999
Q ss_pred HHhc----cC-CeEEEEECCHHHHHHHHhccCCCCCCccccCCCCChhHHHHHHHHHHHHHHHHHHhh-ccceeechhhh
Q 029455 81 WRYM----QK-GISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYAN-ANARVSLENIA 154 (193)
Q Consensus 81 ~~~l----~~-~~vV~L~~~~~~~~~Rl~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~r~~~y~~-~~~~i~~~~~~ 154 (193)
+..| +. +.+|||++|++++.+|+..+ ..||.... . ..+.+.+++.+|.+.|++ +|.+|
T Consensus 93 ~~~L~~~~~~~g~vv~L~~~~~~l~~Rl~~~--~~RPll~~---~-----~~~~~~~l~~~R~~~Y~~~Ad~~i------ 156 (542)
T PRK14021 93 QHALASYIAHGGRVVYLDADPKEAMERANRG--GGRPMLNG---D-----ANKRWKKLFKQRDPVFRQVANVHV------ 156 (542)
T ss_pred HHHHHHHHhcCCEEEEEECCHHHHHHHHhCC--CCCCCCCC---C-----cHHHHHHHHHHHHHHHHhhCCEEE------
Confidence 9865 33 69999999999999999763 46898753 1 146788899999999998 88886
Q ss_pred hhcccccCCCCCHHHHHHHHHHHHHh
Q 029455 155 VKLGHKDVSSLTPVTIAIEALEQIEG 180 (193)
Q Consensus 155 ~~~~~iDt~~~~~~~~~~~i~~~~~~ 180 (193)
||+..+++++++.|++.+..
T Consensus 157 ------~~~~~~~~~~~~~i~~~~~~ 176 (542)
T PRK14021 157 ------HTRGLTPQAAAKKLIDMVAE 176 (542)
T ss_pred ------ECCCCCHHHHHHHHHHHHHh
Confidence 78899999999999998864
No 8
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=99.95 E-value=9.7e-26 Score=170.48 Aligned_cols=158 Identities=29% Similarity=0.521 Sum_probs=136.0
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHHHHHhCCCCHHHHHHHhcchhhHHHHHHHHHHHhccCCcEEEeCCceeeCHhh
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFREKETEVLQKLSLMRQLVVSTGGGAVTRPIN 80 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~~~~~~g~~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~vi~~g~~~v~~~~~ 80 (193)
|+||||||+++.|++.+|++++|+|..+.... |.++.+++...|+..|+..+..++..+...+.+|+++|+|++..+.+
T Consensus 12 ~~GaGKStl~~~La~~l~~~~vd~D~~i~~~~-g~~i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~vi~~ggg~v~~~~~ 90 (172)
T PRK05057 12 PMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRT-GADIGWVFDVEGEEGFRDREEKVINELTEKQGIVLATGGGSVKSRET 90 (172)
T ss_pred CCCcCHHHHHHHHHHHcCCcEEECCchHHHHh-CcCHhHHHHHhCHHHHHHHHHHHHHHHHhCCCEEEEcCCchhCCHHH
Confidence 68999999999999999999999999888777 88888988888999999888888888876667888899999999998
Q ss_pred HHhcc-CCeEEEEECCHHHHHHHHhccCCCCCCccccCCCCChhHHHHHHHHHHHHHHHHHHhh-ccceeechhhhhhcc
Q 029455 81 WRYMQ-KGISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYAN-ANARVSLENIAVKLG 158 (193)
Q Consensus 81 ~~~l~-~~~vV~L~~~~~~~~~Rl~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~r~~~y~~-~~~~i~~~~~~~~~~ 158 (193)
+..|+ .+.+|||++|++++.+|+..+ ..||.... .+ ..+.+..++.+|.+.|++ ||.+|
T Consensus 91 ~~~l~~~~~vv~L~~~~e~~~~Ri~~~--~~rP~~~~---~~----~~~~~~~l~~~R~~~Y~~~Ad~~i---------- 151 (172)
T PRK05057 91 RNRLSARGVVVYLETTIEKQLARTQRD--KKRPLLQV---DD----PREVLEALANERNPLYEEIADVTI---------- 151 (172)
T ss_pred HHHHHhCCEEEEEeCCHHHHHHHHhCC--CCCCCCCC---CC----HHHHHHHHHHHHHHHHHhhCCEEE----------
Confidence 98886 489999999999999999863 46887753 21 235578889999999998 88875
Q ss_pred cccCCCCCHHHHHHHHHHHHHh
Q 029455 159 HKDVSSLTPVTIAIEALEQIEG 180 (193)
Q Consensus 159 ~iDt~~~~~~~~~~~i~~~~~~ 180 (193)
||++++++++++.|.+.++.
T Consensus 152 --dt~~~s~~ei~~~i~~~l~~ 171 (172)
T PRK05057 152 --RTDDQSAKVVANQIIHMLES 171 (172)
T ss_pred --ECCCCCHHHHHHHHHHHHhh
Confidence 89999999999999988753
No 9
>PRK13947 shikimate kinase; Provisional
Probab=99.94 E-value=2.1e-25 Score=168.12 Aligned_cols=156 Identities=38% Similarity=0.587 Sum_probs=131.4
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHHHHHhCCCCHHHHHHHhcchhhHHHHHHHHHHHhccCCcEEEeCCceeeCHhh
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFREKETEVLQKLSLMRQLVVSTGGGAVTRPIN 80 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~~~~~~g~~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~vi~~g~~~v~~~~~ 80 (193)
||||||||+|+.||++||++++|.|.+++... |.++.+++...|+..|+..+..+++.+....++||.+|+|+++.+.+
T Consensus 9 ~~GsGKst~a~~La~~lg~~~id~d~~~~~~~-g~~~~~~~~~~ge~~~~~~e~~~~~~l~~~~~~vi~~g~g~vl~~~~ 87 (171)
T PRK13947 9 FMGTGKTTVGKRVATTLSFGFIDTDKEIEKMT-GMTVAEIFEKDGEVRFRSEEKLLVKKLARLKNLVIATGGGVVLNPEN 87 (171)
T ss_pred CCCCCHHHHHHHHHHHhCCCEEECchhhhhhc-CCcHHHHHHHhChHHHHHHHHHHHHHHhhcCCeEEECCCCCcCCHHH
Confidence 69999999999999999999999999998887 99988999888999999988888888876667888888889998887
Q ss_pred HHhccC-CeEEEEECCHHHHHHHHhccCCCCCCccccCCCCChhHHHHHHHHHHHHHHHHHHhhccceeechhhhhhccc
Q 029455 81 WRYMQK-GISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVSLENIAVKLGH 159 (193)
Q Consensus 81 ~~~l~~-~~vV~L~~~~~~~~~Rl~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~r~~~y~~~~~~i~~~~~~~~~~~ 159 (193)
...++. +.+|||++|++++.+|+..+ ..||.... .+ ..+.+.+.+.+|.+.|+.+|.+|
T Consensus 88 ~~~l~~~~~vv~L~~~~~~l~~Rl~~r--~~rp~~~~---~~----~~~~i~~~~~~r~~~y~~ad~~I----------- 147 (171)
T PRK13947 88 VVQLRKNGVVICLKARPEVILRRVGKK--KSRPLLMV---GD----PEERIKELLKEREPFYDFADYTI----------- 147 (171)
T ss_pred HHHHHhCCEEEEEECCHHHHHHHhcCC--CCCCCCCC---CC----hHHHHHHHHHHHHHHHHhcCEEE-----------
Confidence 777764 78999999999999999864 35665432 21 35667788888888887777765
Q ss_pred ccCCCCCHHHHHHHHHHHH
Q 029455 160 KDVSSLTPVTIAIEALEQI 178 (193)
Q Consensus 160 iDt~~~~~~~~~~~i~~~~ 178 (193)
||++.+++++++.|.+.+
T Consensus 148 -dt~~~~~~~i~~~I~~~~ 165 (171)
T PRK13947 148 -DTGDMTIDEVAEEIIKAY 165 (171)
T ss_pred -ECCCCCHHHHHHHHHHHH
Confidence 889999999999999844
No 10
>PRK00625 shikimate kinase; Provisional
Probab=99.94 E-value=5.3e-25 Score=166.29 Aligned_cols=158 Identities=27% Similarity=0.359 Sum_probs=132.4
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHHHHHhCCC----CHHHHHHHhcchhhHHHHHHHHHHHhccCCcEEEeCCceee
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGT----SVAEIFKLYGEGFFREKETEVLQKLSLMRQLVVSTGGGAVT 76 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~~~~~~g~----~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~vi~~g~~~v~ 76 (193)
+|||||||+|+.||+++|++++|+|.+++... |. ++.+++...|+..|+..|..++..+.. .+.||++|+|.+.
T Consensus 8 ~pGsGKTT~~k~La~~l~~~~id~D~~I~~~~-g~~~~~~i~eif~~~Ge~~fr~~E~~~l~~l~~-~~~VIs~GGg~~~ 85 (173)
T PRK00625 8 LPTVGKTSFGKALAKFLSLPFFDTDDLIVSNY-HGALYSSPKEIYQAYGEEGFCREEFLALTSLPV-IPSIVALGGGTLM 85 (173)
T ss_pred CCCCCHHHHHHHHHHHhCCCEEEhhHHHHHHh-CCCCCCCHHHHHHHHCHHHHHHHHHHHHHHhcc-CCeEEECCCCccC
Confidence 69999999999999999999999999998877 66 899999999999999999888887754 5678999999999
Q ss_pred CHhhHHhccC-CeEEEEECCHHHHHHHHhccCCCCCCccccCCCCChhHHHHHHHHHHHHHHHHHHhh-ccceeechhhh
Q 029455 77 RPINWRYMQK-GISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYAN-ANARVSLENIA 154 (193)
Q Consensus 77 ~~~~~~~l~~-~~vV~L~~~~~~~~~Rl~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~r~~~y~~-~~~~i~~~~~~ 154 (193)
.++++..++. +.+|||++|++++.+|+.. ||..... . ..+.+.+++.+|.+.|++ ||.+|+.
T Consensus 86 ~~e~~~~l~~~~~Vv~L~~~~e~l~~Rl~~-----R~~~~~~--~-----~~~~~~~ll~~R~~~Y~~~ad~~i~~---- 149 (173)
T PRK00625 86 IEPSYAHIRNRGLLVLLSLPIATIYQRLQK-----RGLPERL--K-----HAPSLEEILSQRIDRMRSIADYIFSL---- 149 (173)
T ss_pred CHHHHHHHhcCCEEEEEECCHHHHHHHHhc-----CCCCccc--C-----cHHHHHHHHHHHHHHHHHHCCEEEeC----
Confidence 9999988864 8999999999999999986 4432210 0 135678889999999987 8988843
Q ss_pred hhcccccCCCCCHHHHHHHHHHHH
Q 029455 155 VKLGHKDVSSLTPVTIAIEALEQI 178 (193)
Q Consensus 155 ~~~~~iDt~~~~~~~~~~~i~~~~ 178 (193)
+.+++|+..++-++.+.+...+
T Consensus 150 --~~~~~~~~~~~~~~~~~~~~~~ 171 (173)
T PRK00625 150 --DHVAETSSESLMRACQSFCTLL 171 (173)
T ss_pred --CCcccCCCCCHHHHHHHHHHHh
Confidence 3367899999999888887665
No 11
>PRK00131 aroK shikimate kinase; Reviewed
Probab=99.93 E-value=6.3e-24 Score=159.91 Aligned_cols=161 Identities=42% Similarity=0.683 Sum_probs=133.4
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHHHHHhCCCCHHHHHHHhcchhhHHHHHHHHHHHhccCCcEEEeCCceeeCHhh
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFREKETEVLQKLSLMRQLVVSTGGGAVTRPIN 80 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~~~~~~g~~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~vi~~g~~~v~~~~~ 80 (193)
+|||||||+|+.||+++|++++|.|.+++... |.++.+++...|...|++.+..++..+....++|+.+|+++++....
T Consensus 12 ~~GsGKstla~~La~~l~~~~~d~d~~~~~~~-g~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~vi~~g~~~~~~~~~ 90 (175)
T PRK00131 12 FMGAGKSTIGRLLAKRLGYDFIDTDHLIEARA-GKSIPEIFEEEGEAAFRELEEEVLAELLARHNLVISTGGGAVLREEN 90 (175)
T ss_pred CCCCCHHHHHHHHHHHhCCCEEEChHHHHHHc-CCCHHHHHHHHCHHHHHHHHHHHHHHHHhcCCCEEEeCCCEeecHHH
Confidence 69999999999999999999999999998887 88888888888888888888788888776556788888888888888
Q ss_pred HHhcc-CCeEEEEECCHHHHHHHHhccCCCCCCccccCCCCChhHHHHHHHHHHHHHHHHHHhh-ccceeechhhhhhcc
Q 029455 81 WRYMQ-KGISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYAN-ANARVSLENIAVKLG 158 (193)
Q Consensus 81 ~~~l~-~~~vV~L~~~~~~~~~Rl~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~r~~~y~~-~~~~i~~~~~~~~~~ 158 (193)
+..++ ..++|||++|++++.+|+.++. .|+.... .+ ..+.+...+.++.+.|.. +|++|
T Consensus 91 r~~l~~~~~~v~l~~~~~~~~~R~~~~~--~r~~~~~---~~----~~~~~~~~~~~~~~~~~~~~dl~i---------- 151 (175)
T PRK00131 91 RALLRERGTVVYLDASFEELLRRLRRDR--NRPLLQT---ND----PKEKLRDLYEERDPLYEEVADITV---------- 151 (175)
T ss_pred HHHHHhCCEEEEEECCHHHHHHHhcCCC--CCCcCCC---CC----hHHHHHHHHHHHHHHHHhhcCeEE----------
Confidence 87775 4799999999999999998753 3665442 11 246677888888888876 77765
Q ss_pred cccCCCCCHHHHHHHHHHHHHhhhc
Q 029455 159 HKDVSSLTPVTIAIEALEQIEGFLK 183 (193)
Q Consensus 159 ~iDt~~~~~~~~~~~i~~~~~~~~~ 183 (193)
||++.+++++++.|.+.++.+++
T Consensus 152 --dt~~~~~~e~~~~I~~~v~~~~~ 174 (175)
T PRK00131 152 --ETDGRSPEEVVNEILEKLEAAWR 174 (175)
T ss_pred --eCCCCCHHHHHHHHHHHHHhhcc
Confidence 89999999999999999987764
No 12
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=99.91 E-value=2e-22 Score=151.89 Aligned_cols=158 Identities=32% Similarity=0.507 Sum_probs=127.3
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHHHHHhCCCCHHHHHHHhcchhhHHHHHHHHHHHhccCCcEEEeCCceeeCHhh
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFREKETEVLQKLSLMRQLVVSTGGGAVTRPIN 80 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~~~~~~g~~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~vi~~g~~~v~~~~~ 80 (193)
+|||||||+|+.||+++|++++|.|.+++... |.++.+++...|+..|++.+..++..+. ...+||.+|+++++...+
T Consensus 10 ~~GsGKst~~~~la~~lg~~~~d~D~~~~~~~-g~~~~~~~~~~g~~~~~~~e~~~~~~~~-~~~~vi~~ggg~vl~~~~ 87 (171)
T PRK03731 10 ARGCGKTTVGMALAQALGYRFVDTDQWLQSTS-NMTVAEIVEREGWAGFRARESAALEAVT-APSTVIATGGGIILTEEN 87 (171)
T ss_pred CCCCCHHHHHHHHHHHhCCCEEEccHHHHHHh-CCCHHHHHHHHCHHHHHHHHHHHHHHhc-CCCeEEECCCCccCCHHH
Confidence 68999999999999999999999999998888 9999888888899999988888776543 456788899899998888
Q ss_pred HHhcc-CCeEEEEECCHHHHHHHHhccC-CCCCCccccCCCCChhHHHHHHHHHHHHHHHHHHhh-ccceeechhhhhhc
Q 029455 81 WRYMQ-KGISVWLDVPLEALAQRIAAVG-TDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYAN-ANARVSLENIAVKL 157 (193)
Q Consensus 81 ~~~l~-~~~vV~L~~~~~~~~~Rl~~~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~r~~~y~~-~~~~i~~~~~~~~~ 157 (193)
+..++ .+++|||++|++++.+|+..+. ...||.... .+ ..+.+.+.+.+|.+.|.. ++.+
T Consensus 88 ~~~l~~~~~~v~l~~~~~~~~~Rl~~r~~~~~rp~~~~---~~----~~~~~~~~~~~r~~~y~~~a~~~---------- 150 (171)
T PRK03731 88 RHFMRNNGIVIYLCAPVSVLANRLEANPEEDQRPTLTG---KP----ISEEVAEVLAEREALYREVAHHI---------- 150 (171)
T ss_pred HHHHHhCCEEEEEECCHHHHHHHHccccccccCCcCCC---CC----hHHHHHHHHHHHHHHHHHhCCEE----------
Confidence 88776 4899999999999999998642 123554322 11 235677788888888987 5555
Q ss_pred ccccCCCCCHHHHHHHHHHHHHh
Q 029455 158 GHKDVSSLTPVTIAIEALEQIEG 180 (193)
Q Consensus 158 ~~iDt~~~~~~~~~~~i~~~~~~ 180 (193)
||++ .+++++++.|...+.+
T Consensus 151 --Id~~-~~~e~v~~~i~~~l~~ 170 (171)
T PRK03731 151 --IDAT-QPPSQVVSEILSALAQ 170 (171)
T ss_pred --EcCC-CCHHHHHHHHHHHHhc
Confidence 4765 8999999999988764
No 13
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=99.90 E-value=3.7e-22 Score=163.85 Aligned_cols=161 Identities=35% Similarity=0.572 Sum_probs=133.3
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHHHHHhCCCCHHHHHHHhcchhhHHHHHHHHHHHhc-cCCcEEEeCCceeeCHh
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFREKETEVLQKLSL-MRQLVVSTGGGAVTRPI 79 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~~~~~~g~~~~~~~~~~~~~~~~~~e~~~~~~l~~-~~~~vi~~g~~~v~~~~ 79 (193)
+|||||||+|+.||++||++++|+|..+.+.. |.++.+++...|+..|+..+..++..+.. .+.+||.+|++.+..+.
T Consensus 141 ~~GsGKStvg~~La~~Lg~~~id~D~~i~~~~-G~~i~ei~~~~G~~~fr~~e~~~l~~ll~~~~~~VI~~Ggg~v~~~~ 219 (309)
T PRK08154 141 LRGAGKSTLGRMLAARLGVPFVELNREIEREA-GLSVSEIFALYGQEGYRRLERRALERLIAEHEEMVLATGGGIVSEPA 219 (309)
T ss_pred CCCCCHHHHHHHHHHHcCCCEEeHHHHHHHHh-CCCHHHHHHHHCHHHHHHHHHHHHHHHHhhCCCEEEECCCchhCCHH
Confidence 69999999999999999999999999988888 99999998888999999888888877654 34578888888888877
Q ss_pred hHHhcc-CCeEEEEECCHHHHHHHHhccCCCCCCccccCCCCChhHHHHHHHHHHHHHHHHHHhhccceeechhhhhhcc
Q 029455 80 NWRYMQ-KGISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVSLENIAVKLG 158 (193)
Q Consensus 80 ~~~~l~-~~~vV~L~~~~~~~~~Rl~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~r~~~y~~~~~~i~~~~~~~~~~ 158 (193)
++..+. +.++|||++|++++.+|+.++. ..||.... . ...+.+.+++..|.+.|+++|++|
T Consensus 220 ~~~~l~~~~~~V~L~a~~e~~~~Rl~~r~-~~rp~~~~---~----~~~e~i~~~~~~R~~~y~~ad~~I---------- 281 (309)
T PRK08154 220 TFDLLLSHCYTVWLKASPEEHMARVRAQG-DLRPMADN---R----EAMEDLRRILASREPLYARADAVV---------- 281 (309)
T ss_pred HHHHHHhCCEEEEEECCHHHHHHHHhcCC-CCCCCCCC---C----ChHHHHHHHHHHHHHHHHhCCEEE----------
Confidence 776554 5789999999999999998742 34664432 1 135678888999999998888875
Q ss_pred cccCCCCCHHHHHHHHHHHHHhhh
Q 029455 159 HKDVSSLTPVTIAIEALEQIEGFL 182 (193)
Q Consensus 159 ~iDt~~~~~~~~~~~i~~~~~~~~ 182 (193)
||+..+++++++.|...+...+
T Consensus 282 --~t~~~s~ee~~~~I~~~l~~~~ 303 (309)
T PRK08154 282 --DTSGLTVAQSLARLRELVRPAL 303 (309)
T ss_pred --ECCCCCHHHHHHHHHHHHHHHh
Confidence 8899999999999999997665
No 14
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=99.90 E-value=3.1e-22 Score=172.78 Aligned_cols=149 Identities=39% Similarity=0.621 Sum_probs=128.1
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHHHHHhCCCCHHHHHHHhcchhhHHHHHHHHHHHhccCCcEEEeCCceeeCHhh
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFREKETEVLQKLSLMRQLVVSTGGGAVTRPIN 80 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~~~~~~g~~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~vi~~g~~~v~~~~~ 80 (193)
+|||||||+|+.||+.+|++++|+|.++++.. |.++.+++..+|+..|++.+.++++++....++|+++|+|+++++++
T Consensus 8 ~~GsGKSTv~~~La~~lg~~~id~D~~i~~~~-g~~i~~i~~~~Ge~~fr~~E~~~l~~l~~~~~~Vis~Gggvv~~~~~ 86 (488)
T PRK13951 8 MMGSGKSTIGKRVSEVLDLQFIDMDEEIERRE-GRSVRRIFEEDGEEYFRLKEKELLRELVERDNVVVATGGGVVIDPEN 86 (488)
T ss_pred CCCCCHHHHHHHHHHHcCCeEEECcHHHHHHc-CCCHHHHHHHhhhHHHHHHHHHHHHHHhhcCCEEEECCCccccChHH
Confidence 69999999999999999999999999998887 99999999999999999999999988876667899999999999999
Q ss_pred HHhccCCeEEEEECCHHHHHHHHhccCCCCCCccccCCCCChhHHHHHHHHHHHHHHHHHHhhccceeechhhhhhcccc
Q 029455 81 WRYMQKGISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVSLENIAVKLGHK 160 (193)
Q Consensus 81 ~~~l~~~~vV~L~~~~~~~~~Rl~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~r~~~y~~~~~~i~~~~~~~~~~~i 160 (193)
++.++...+|||++|++++.+|+.. ++||.... ..+.+.+++.+|.+.|++. .+ |
T Consensus 87 r~~l~~~~vI~L~as~e~l~~Rl~~---~~RPLl~~---------~~e~l~~L~~~R~~lY~~~-~~------------I 141 (488)
T PRK13951 87 RELLKKEKTLFLYAPPEVLMERVTT---ENRPLLRE---------GKERIREIWERRKQFYTEF-RG------------I 141 (488)
T ss_pred HHHHhcCeEEEEECCHHHHHHHhcc---CCCCCccc---------cHHHHHHHHHHHHHHHhcc-cE------------E
Confidence 9888766799999999999999975 36886543 1356778899999999864 23 5
Q ss_pred cCCCCCHHHHHHHHH
Q 029455 161 DVSSLTPVTIAIEAL 175 (193)
Q Consensus 161 Dt~~~~~~~~~~~i~ 175 (193)
|+++.+++++++.|+
T Consensus 142 Dt~~~s~~e~~~~iv 156 (488)
T PRK13951 142 DTSKLNEWETTALVV 156 (488)
T ss_pred ECCCCCHHHHHHHHH
Confidence 889999988887773
No 15
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=99.89 E-value=4.4e-22 Score=147.18 Aligned_cols=145 Identities=48% Similarity=0.701 Sum_probs=118.7
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHHHHHhCCCCHHHHHHHhcchhhHHHHHHHHHHHhccCCcEEEeCCceeeCHhh
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFREKETEVLQKLSLMRQLVVSTGGGAVTRPIN 80 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~~~~~~g~~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~vi~~g~~~v~~~~~ 80 (193)
+|||||||+|+.||+.+|+++++.|.++.... |.++.+++...|+..|+..+.+++..+....++||.+|+++++...+
T Consensus 7 ~~GsGKstla~~la~~l~~~~~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~vi~~g~~~i~~~~~ 85 (154)
T cd00464 7 MMGAGKTTVGRLLAKALGLPFVDLDELIEQRA-GMSIPEIFAEEGEEGFRELEREVLLLLLTKENAVIATGGGAVLREEN 85 (154)
T ss_pred CCCCCHHHHHHHHHHHhCCCEEEchHHHHHHc-CCCHHHHHHHHCHHHHHHHHHHHHHHHhccCCcEEECCCCccCcHHH
Confidence 69999999999999999999999999998887 87888888888888888887777777776678888888788887766
Q ss_pred HHhcc-CCeEEEEECCHHHHHHHHhccCCCCCCccccCCCCChhHHHHHHHHHHHHHHHHHHhh-ccceeechhhhhhcc
Q 029455 81 WRYMQ-KGISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYAN-ANARVSLENIAVKLG 158 (193)
Q Consensus 81 ~~~l~-~~~vV~L~~~~~~~~~Rl~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~r~~~y~~-~~~~i~~~~~~~~~~ 158 (193)
+..+. ...+|||++|++++.+|+..+. .||.....+ .+.+.+++.+|.+.|.+ +|+++
T Consensus 86 ~~~~~~~~~~i~l~~~~e~~~~R~~~r~--~r~~~~~~~--------~~~~~~~~~~r~~~Y~~~ad~~i---------- 145 (154)
T cd00464 86 RRLLLENGIVVWLDASPEELLERLARDK--TRPLLQDED--------PERLRELLEEREPLYREVADLTI---------- 145 (154)
T ss_pred HHHHHcCCeEEEEeCCHHHHHHHhccCC--CCCCCCCCC--------HHHHHHHHHHHHHHHHHhCcEEE----------
Confidence 54444 4799999999999999998753 577765411 25688888999999998 88886
Q ss_pred cccCCCCCHH
Q 029455 159 HKDVSSLTPV 168 (193)
Q Consensus 159 ~iDt~~~~~~ 168 (193)
||++++++
T Consensus 146 --~~~~~~~~ 153 (154)
T cd00464 146 --DTDELSPE 153 (154)
T ss_pred --ECCCCCCC
Confidence 67777765
No 16
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=99.85 E-value=7.5e-20 Score=133.75 Aligned_cols=165 Identities=25% Similarity=0.341 Sum_probs=108.2
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHHHHHh--CCCCHHHHHHHhcchhhH-HHH-HHHHHHHhccCCcEEEeC-Ccee
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQSV--DGTSVAEIFKLYGEGFFR-EKE-TEVLQKLSLMRQLVVSTG-GGAV 75 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~~~~~--~g~~~~~~~~~~~~~~~~-~~e-~~~~~~l~~~~~~vi~~g-~~~v 75 (193)
+|||||||+|+.||+.||+++++++.+|++++ .|+++.++- ...+..+. ..+ .+....+...+++|+... .+++
T Consensus 8 ~pGsG~TTva~~lAe~~gl~~vsaG~iFR~~A~e~gmsl~ef~-~~AE~~p~iD~~iD~rq~e~a~~~nvVlegrLA~Wi 86 (179)
T COG1102 8 LPGSGKTTVARELAEHLGLKLVSAGTIFREMARERGMSLEEFS-RYAEEDPEIDKEIDRRQKELAKEGNVVLEGRLAGWI 86 (179)
T ss_pred CCCCChhHHHHHHHHHhCCceeeccHHHHHHHHHcCCCHHHHH-HHHhcCchhhHHHHHHHHHHHHcCCeEEhhhhHHHH
Confidence 69999999999999999999999999999887 489988853 33333321 111 112233444556555421 1222
Q ss_pred eCHhhHHhccCCeEEEEECCHHHHHHHHhccCCCCCCccccCCCCChhHHHHHHHHHHHHHHHHHHhhccceeechhhhh
Q 029455 76 TRPINWRYMQKGISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVSLENIAV 155 (193)
Q Consensus 76 ~~~~~~~~l~~~~vV~L~~~~~~~~~Rl~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~r~~~y~~~~~~i~~~~~~~ 155 (193)
... ..++.|||.+|.+++.+|+.+|++ .+ +.+++..+.+.-......|.. =+-||.++++.
T Consensus 87 ~k~------~adlkI~L~Apl~vRa~Ria~REg--i~----------~~~a~~~~~~RE~se~kRY~~-~YgIDidDlSi 147 (179)
T COG1102 87 VRE------YADLKIWLKAPLEVRAERIAKREG--ID----------VDEALAETVEREESEKKRYKK-IYGIDIDDLSI 147 (179)
T ss_pred hcc------ccceEEEEeCcHHHHHHHHHHhcC--CC----------HHHHHHHHHHHHHHHHHHHHH-HhCCCCcccee
Confidence 210 137999999999999999998521 11 112333332221122234444 12245568999
Q ss_pred hcccccCCCCCHHHHHHHHHHHHHhhhccc
Q 029455 156 KLGHKDVSSLTPVTIAIEALEQIEGFLKEE 185 (193)
Q Consensus 156 ~~~~iDt~~~~~~~~~~~i~~~~~~~~~~~ 185 (193)
|+++|||+..+|++++..+..++.....++
T Consensus 148 yDLVinTs~~~~~~v~~il~~aid~~~~~~ 177 (179)
T COG1102 148 YDLVINTSKWDPEEVFLILLDAIDALSIKE 177 (179)
T ss_pred eEEEEecccCCHHHHHHHHHHHHHhhcccc
Confidence 999999999999999999999988766544
No 17
>PRK04182 cytidylate kinase; Provisional
Probab=99.73 E-value=3e-16 Score=118.67 Aligned_cols=163 Identities=24% Similarity=0.316 Sum_probs=98.0
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHHHHHh--CCCCHHHHHHHhcchhh---HHHHHHHHHHHh-ccCCcEEEeC-Cc
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQSV--DGTSVAEIFKLYGEGFF---REKETEVLQKLS-LMRQLVVSTG-GG 73 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~~~~~--~g~~~~~~~~~~~~~~~---~~~e~~~~~~l~-~~~~~vi~~g-~~ 73 (193)
+|||||||+|+.||+++|++++|+|++++... .|.+..++.. .+...+ +..+ ..+..+. ..+.+|+... .+
T Consensus 8 ~~GsGKstia~~la~~lg~~~id~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~Vi~g~~~~ 85 (180)
T PRK04182 8 PPGSGKTTVARLLAEKLGLKHVSAGEIFRELAKERGMSLEEFNK-YAEEDPEIDKEID-RRQLEIAEKEDNVVLEGRLAG 85 (180)
T ss_pred CCCCCHHHHHHHHHHHcCCcEecHHHHHHHHHHHcCCCHHHHHH-HhhcCchHHHHHH-HHHHHHHhcCCCEEEEEeecc
Confidence 58999999999999999999999988776543 2666666542 232222 2222 2223343 3445555421 22
Q ss_pred eeeCHhhHHhccCCeEEEEECCHHHHHHHHhccCCCCCCccccCCCCChhHHHHHHHHHHHHHHHHHHhh-ccceeechh
Q 029455 74 AVTRPINWRYMQKGISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYAN-ANARVSLEN 152 (193)
Q Consensus 74 ~v~~~~~~~~l~~~~vV~L~~~~~~~~~Rl~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~r~~~y~~-~~~~i~~~~ 152 (193)
++..+. .+++|||+||++++++|+..+. .++.. ++...+.+....+...|.. .+... + +
T Consensus 86 ~~~~~~------~~~~V~l~a~~e~~~~Rl~~r~--~~~~~----------~a~~~~~~~d~~~~~~~~~~~~~~~-~-~ 145 (180)
T PRK04182 86 WMAKDY------ADLKIWLKAPLEVRAERIAERE--GISVE----------EALEETIEREESEAKRYKEYYGIDI-D-D 145 (180)
T ss_pred eEecCC------CCEEEEEECCHHHHHHHHHhcc--CCCHH----------HHHHHHHHHHHHHHHHHHHHhCCCc-c-c
Confidence 222210 2689999999999999998742 23321 1223333333233333332 11111 1 1
Q ss_pred hhhhcccccCCCCCHHHHHHHHHHHHHhhhccc
Q 029455 153 IAVKLGHKDVSSLTPVTIAIEALEQIEGFLKEE 185 (193)
Q Consensus 153 ~~~~~~~iDt~~~~~~~~~~~i~~~~~~~~~~~ 185 (193)
...++++|||+..+++++++.|.+.+......+
T Consensus 146 ~~~~d~~idt~~~~~~~~~~~I~~~~~~~~~~~ 178 (180)
T PRK04182 146 LSIYDLVINTSRWDPEGVFDIILTAIDKLLKAK 178 (180)
T ss_pred cccccEEEECCCCCHHHHHHHHHHHHHHHhccc
Confidence 224556789999999999999999998766543
No 18
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=99.73 E-value=4.1e-16 Score=117.03 Aligned_cols=157 Identities=20% Similarity=0.253 Sum_probs=95.8
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHHHHHh--CCCCHHHHHHHh--cchhhHHHHHHHHHHHh-ccCCcEEEeCC-ce
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQSV--DGTSVAEIFKLY--GEGFFREKETEVLQKLS-LMRQLVVSTGG-GA 74 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~~~~~--~g~~~~~~~~~~--~~~~~~~~e~~~~~~l~-~~~~~vi~~g~-~~ 74 (193)
++||||||+|+.|++++|+++++.|++++... .|.+...+.... .......+ ...+..+. ....+|+.... ++
T Consensus 8 ~~GSGKstia~~la~~lg~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~Vi~g~~~~~ 86 (171)
T TIGR02173 8 PPGSGKTTVAKILAEKLSLKLISAGDIFRELAAKMGLDLIEFLNYAEENPEIDKKI-DRRIHEIALKEKNVVLESRLAGW 86 (171)
T ss_pred CCCCCHHHHHHHHHHHcCCceecHHHHHHHHHHHcCCCHHHHHHHHhcCcHHHHHH-HHHHHHHHhcCCCEEEEecccce
Confidence 58999999999999999999999988776654 145544322111 11111111 11223333 33455554221 12
Q ss_pred eeCHhhHHhccCCeEEEEECCHHHHHHHHhccCCCCCCccccCCCCChhHHHHHHHHHHHHHHHHHHhhccceeechhhh
Q 029455 75 VTRPINWRYMQKGISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVSLENIA 154 (193)
Q Consensus 75 v~~~~~~~~l~~~~vV~L~~~~~~~~~Rl~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~r~~~y~~~~~~i~~~~~~ 154 (193)
.+.. ..+++|||+||++++.+|+.+| ..... . ++.+.+.+....+...|....-. +..+..
T Consensus 87 ~~~~------~~d~~v~v~a~~~~r~~R~~~R-----~~~s~---~----~a~~~~~~~d~~~~~~~~~~~~~-~~~~~~ 147 (171)
T TIGR02173 87 IVRE------YADVKIWLKAPLEVRARRIAKR-----EGKSL---T----VARSETIEREESEKRRYLKFYGI-DIDDLS 147 (171)
T ss_pred eecC------CcCEEEEEECCHHHHHHHHHHc-----cCCCH---H----HHHHHHHHHHHHHHHHHHHHhCC-Cccccc
Confidence 1110 0258999999999999999974 21111 1 24455555544555555542111 224677
Q ss_pred hhcccccCCCCCHHHHHHHHHHHH
Q 029455 155 VKLGHKDVSSLTPVTIAIEALEQI 178 (193)
Q Consensus 155 ~~~~~iDt~~~~~~~~~~~i~~~~ 178 (193)
.|+++|||+.+++++ ++.|..++
T Consensus 148 ~ydl~i~t~~~~~~~-~~~i~~~~ 170 (171)
T TIGR02173 148 IYDLVINTSNWDPNN-VDIILDAL 170 (171)
T ss_pred cccEEEECCCCCHHH-HHHHHHHh
Confidence 899999999999999 99998765
No 19
>PRK14532 adenylate kinase; Provisional
Probab=99.67 E-value=7.1e-15 Score=112.34 Aligned_cols=157 Identities=19% Similarity=0.157 Sum_probs=95.3
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHHHHHh-C----CCCHHHHHHHhcchhhHHHHHHHHHHHhc----cCCcEEEeC
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQSV-D----GTSVAEIFKLYGEGFFREKETEVLQKLSL----MRQLVVSTG 71 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~~~~~-~----g~~~~~~~~~~~~~~~~~~e~~~~~~l~~----~~~~vi~~g 71 (193)
||||||||+|+.||+++|++++++|+++++.. . |..+.+++. .|...+.++...++..... ...+|+ .|
T Consensus 8 ~pGsGKsT~a~~la~~~g~~~is~~d~lr~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~g~vl-dg 85 (188)
T PRK14532 8 PPAAGKGTQAKRLVEERGMVQLSTGDMLRAAIASGSELGQRVKGIMD-RGELVSDEIVIALIEERLPEAEAAGGAIF-DG 85 (188)
T ss_pred CCCCCHHHHHHHHHHHcCCeEEeCcHHHHHHHHcCCHHHHHHHHHHH-CCCccCHHHHHHHHHHHHhCcCccCcEEE-eC
Confidence 69999999999999999999999999888753 1 223344443 3544444433333333221 122333 23
Q ss_pred CceeeCHhhHH----hcc-----CCeEEEEECCHHHHHHHHhccCC-CCCCccccCCCCChhHHHHHHHHHHHHHHH---
Q 029455 72 GGAVTRPINWR----YMQ-----KGISVWLDVPLEALAQRIAAVGT-DSRPLLHQCESGDAYTEALNRLSTLWEERG--- 138 (193)
Q Consensus 72 ~~~v~~~~~~~----~l~-----~~~vV~L~~~~~~~~~Rl~~~~~-~~R~~~~~~~~~~~~~~~~~~~~~~~~~r~--- 138 (193)
++....... .+. .+.+|||++|++++.+|+..|.. ..|+. +..+....++...+..+.
T Consensus 86 --~pr~~~q~~~~~~~l~~~g~~pd~vi~L~v~~~~~~~Rl~~R~~~~~r~d-------d~~~~~~~Rl~~~~~~~~~i~ 156 (188)
T PRK14532 86 --FPRTVAQAEALDKMLASRGQKIDVVIRLKVDDEALIERIVKRFEEQGRPD-------DNPEVFVTRLDAYNAQTAPLL 156 (188)
T ss_pred --CCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCcCcCCCCC-------CCHHHHHHHHHHHHHHHHHHH
Confidence 333222121 222 25899999999999999987521 12332 211133456666666554
Q ss_pred HHHhhccceeechhhhhhcccccCCCCCHHHHHHHHHHHHH
Q 029455 139 EAYANANARVSLENIAVKLGHKDVSSLTPVTIAIEALEQIE 179 (193)
Q Consensus 139 ~~y~~~~~~i~~~~~~~~~~~iDt~~~~~~~~~~~i~~~~~ 179 (193)
+.|+..+..+ .||. ..+++++.+.|...+.
T Consensus 157 ~~y~~~~~~~----------~id~-~~~~eev~~~I~~~l~ 186 (188)
T PRK14532 157 PYYAGQGKLT----------EVDG-MGSIEAVAASIDAALE 186 (188)
T ss_pred HHHHhcCCEE----------EEEC-CCCHHHHHHHHHHHHh
Confidence 3455544444 3674 5899999999998875
No 20
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=99.67 E-value=8e-16 Score=111.08 Aligned_cols=144 Identities=19% Similarity=0.263 Sum_probs=94.8
Q ss_pred CCCchHHHHHHHHHhcCCcEeechHHHH-----HHhCCCCHHHHHHHhcchhhHHHHHHHHHHHhccCCcEEEeCCceee
Q 029455 2 MGSGKTTVGKILSGVLGYSFFDCDTLIE-----QSVDGTSVAEIFKLYGEGFFREKETEVLQKLSLMRQLVVSTGGGAVT 76 (193)
Q Consensus 2 ~GsGKSTia~~La~~lg~~~~d~d~~~~-----~~~~g~~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~vi~~g~~~v~ 76 (193)
+||||||++..||++||+.|++.|+++. ++..|.++.+ .+++.+...+...+..........||.|+ -+
T Consensus 4 sG~GKStvg~~lA~~lg~~fidGDdlHp~aNi~KM~~GiPL~D---dDR~pWL~~l~~~~~~~~~~~~~~vi~CS---AL 77 (161)
T COG3265 4 SGSGKSTVGSALAERLGAKFIDGDDLHPPANIEKMSAGIPLND---DDRWPWLEALGDAAASLAQKNKHVVIACS---AL 77 (161)
T ss_pred CccCHHHHHHHHHHHcCCceecccccCCHHHHHHHhCCCCCCc---chhhHHHHHHHHHHHHhhcCCCceEEecH---HH
Confidence 7999999999999999999999999873 2335777665 45556555554333332222233566654 45
Q ss_pred CHhhHHhccC----CeEEEEECCHHHHHHHHhccCCCCCCccccCCCCChhHHHHHHHHHHHHHHHHHHhh--cc-ceee
Q 029455 77 RPINWRYMQK----GISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYAN--AN-ARVS 149 (193)
Q Consensus 77 ~~~~~~~l~~----~~vV~L~~~~~~~~~Rl~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~r~~~y~~--~~-~~i~ 149 (193)
....+..|+. -.+|||+.+.+++++|+..|. ...+.. .-+..+++ ..+. +| .+|
T Consensus 78 Kr~YRD~LR~~~~~~~Fv~L~g~~~~i~~Rm~~R~---gHFM~~-----------~ll~SQfa----~LE~P~~de~vi- 138 (161)
T COG3265 78 KRSYRDLLREANPGLRFVYLDGDFDLILERMKARK---GHFMPA-----------SLLDSQFA----TLEEPGADEDVL- 138 (161)
T ss_pred HHHHHHHHhccCCCeEEEEecCCHHHHHHHHHhcc---cCCCCH-----------HHHHHHHH----HhcCCCCCCCEE-
Confidence 5666677762 379999999999999999852 223221 22333332 2332 11 222
Q ss_pred chhhhhhcccccCCCCCHHHHHHHHHHHHHh
Q 029455 150 LENIAVKLGHKDVSSLTPVTIAIEALEQIEG 180 (193)
Q Consensus 150 ~~~~~~~~~~iDt~~~~~~~~~~~i~~~~~~ 180 (193)
.||. ..+++++++.+++++..
T Consensus 139 ---------~idi-~~~~e~vv~~~~~~l~~ 159 (161)
T COG3265 139 ---------TIDI-DQPPEEVVAQALAWLKE 159 (161)
T ss_pred ---------EeeC-CCCHHHHHHHHHHHHhc
Confidence 4786 48899999999998864
No 21
>PRK03839 putative kinase; Provisional
Probab=99.66 E-value=2.8e-15 Score=113.89 Aligned_cols=151 Identities=22% Similarity=0.234 Sum_probs=89.2
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHHHHHhCCCCHHHHHHHhcchhhHHHHHHHHHHHhccCCcEEEeCCceeeCHhh
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFREKETEVLQKLSLMRQLVVSTGGGAVTRPIN 80 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~~~~~~g~~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~vi~~g~~~v~~~~~ 80 (193)
+|||||||+|+.||+++|++|+|+|++++.. +. .+.+...+...|+.++..+.+.+ ...++ |.+|...
T Consensus 8 ~pGsGKsT~~~~La~~~~~~~id~d~~~~~~--~~--~~~~~~~~~~~~~~l~~~~~~~~-~~~~v-IidG~~~------ 75 (180)
T PRK03839 8 TPGVGKTTVSKLLAEKLGYEYVDLTEFALKK--GI--GEEKDDEMEIDFDKLAYFIEEEF-KEKNV-VLDGHLS------ 75 (180)
T ss_pred CCCCCHHHHHHHHHHHhCCcEEehhhhhhhc--CC--cccCChhhhcCHHHHHHHHHHhc-cCCCE-EEEeccc------
Confidence 6999999999999999999999999988653 21 12222233344665555444322 22344 4444210
Q ss_pred HHhccCCeEEEEECCHHHHHHHHhccCCCCCCccccCCCCChhHHHHHHHHHHHHHHHHHHhhccceeechhhhhhcccc
Q 029455 81 WRYMQKGISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVSLENIAVKLGHK 160 (193)
Q Consensus 81 ~~~l~~~~vV~L~~~~~~~~~Rl~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~r~~~y~~~~~~i~~~~~~~~~~~i 160 (193)
.....+.+|||+++++++.+|+..|.. .|+... + .....+.+.+. ...|.....++ +|
T Consensus 76 -~l~~~~~vi~L~~~~~~~~~Rl~~R~~-~~~~~~-----~---~~~~~~~~~~~--~~~~~~r~~~~----------~I 133 (180)
T PRK03839 76 -HLLPVDYVIVLRAHPKIIKERLKERGY-SKKKIL-----E---NVEAELVDVCL--CEALEEKEKVI----------EV 133 (180)
T ss_pred -cccCCCEEEEEECCHHHHHHHHHHcCC-CHHHHH-----H---HHHHHHHHHHH--HHHHHhcCCEE----------EE
Confidence 111237899999999999999986420 111100 0 01112211111 01232212222 37
Q ss_pred cCCCCCHHHHHHHHHHHHHhhhccc
Q 029455 161 DVSSLTPVTIAIEALEQIEGFLKEE 185 (193)
Q Consensus 161 Dt~~~~~~~~~~~i~~~~~~~~~~~ 185 (193)
|+++.+++++++.|...+.......
T Consensus 134 d~~~~s~eev~~~I~~~l~~~~~~~ 158 (180)
T PRK03839 134 DTTGKTPEEVVEEILELIKSGKKRK 158 (180)
T ss_pred ECCCCCHHHHHHHHHHHHhcCCCCC
Confidence 9888999999999999987665444
No 22
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=99.63 E-value=3.7e-15 Score=108.38 Aligned_cols=147 Identities=18% Similarity=0.244 Sum_probs=96.8
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHHH-----HHhCCCCHHHHHHHhcchhhHHHHHHHHHHHhccCCcEEEeCCcee
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIE-----QSVDGTSVAEIFKLYGEGFFREKETEVLQKLSLMRQLVVSTGGGAV 75 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~~-----~~~~g~~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~vi~~g~~~v 75 (193)
.+||||||+|+.|+++||+.|+|+|+++. .+.+|.++.+ ++++.+...+......++...+..|++|+ .
T Consensus 20 vsGsGKSTigk~L~~~l~~~F~dgDd~Hp~~NveKM~~GipLnD---~DR~pWL~~i~~~~~~~l~~~q~vVlACS---a 93 (191)
T KOG3354|consen 20 VSGSGKSTIGKALSEELGLKFIDGDDLHPPANVEKMTQGIPLND---DDRWPWLKKIAVELRKALASGQGVVLACS---A 93 (191)
T ss_pred cCCCChhhHHHHHHHHhCCcccccccCCCHHHHHHHhcCCCCCc---ccccHHHHHHHHHHHHHhhcCCeEEEEhH---H
Confidence 47999999999999999999999999873 2335777665 56677666665555556665567777765 2
Q ss_pred eCHhhHHhcc------------C--CeEEEEECCHHHHHHHHhccCCCCCCccccCCCCChhHHHHHHHHHHHHHHHHHH
Q 029455 76 TRPINWRYMQ------------K--GISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAY 141 (193)
Q Consensus 76 ~~~~~~~~l~------------~--~~vV~L~~~~~~~~~Rl~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~r~~~y 141 (193)
+....+..|+ . -.+|+|.++.+++.+|+.+|. -..+.. .-++.++ ...
T Consensus 94 LKk~YRdILr~sl~~gk~~~~~~~~l~fi~l~~s~evi~~Rl~~R~---gHFMp~-----------~lleSQf----~~L 155 (191)
T KOG3354|consen 94 LKKKYRDILRHSLKDGKPGKCPESQLHFILLSASFEVILKRLKKRK---GHFMPA-----------DLLESQF----ATL 155 (191)
T ss_pred HHHHHHHHHHhhcccCCccCCccceEEEeeeeccHHHHHHHHhhcc---cccCCH-----------HHHHHHH----Hhc
Confidence 3333333321 0 268999999999999999742 112211 1122222 223
Q ss_pred hh--ccc--eeechhhhhhcccccCCCCCHHHHHHHHHHHHHhh
Q 029455 142 AN--ANA--RVSLENIAVKLGHKDVSSLTPVTIAIEALEQIEGF 181 (193)
Q Consensus 142 ~~--~~~--~i~~~~~~~~~~~iDt~~~~~~~~~~~i~~~~~~~ 181 (193)
+. ++. +| .||..+.+++++++.|.+.+...
T Consensus 156 E~p~~~e~div----------~isv~~~~~e~iv~tI~k~~~~~ 189 (191)
T KOG3354|consen 156 EAPDADEEDIV----------TISVKTYSVEEIVDTIVKMVALN 189 (191)
T ss_pred cCCCCCccceE----------EEeeccCCHHHHHHHHHHHHHhh
Confidence 22 222 33 36766699999999999877643
No 23
>PRK13808 adenylate kinase; Provisional
Probab=99.60 E-value=1.5e-13 Score=112.98 Aligned_cols=171 Identities=15% Similarity=0.131 Sum_probs=97.0
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHHHHHh-C----CCCHHHHHHHhcchhhHHHHHHHHH-HHhc---cCCcEEEeC
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQSV-D----GTSVAEIFKLYGEGFFREKETEVLQ-KLSL---MRQLVVSTG 71 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~~~~~-~----g~~~~~~~~~~~~~~~~~~e~~~~~-~l~~---~~~~vi~~g 71 (193)
||||||||+|+.|++.+|+++++.+++++... . |..+.+++.. |.....++...++. .+.. ...+||+ |
T Consensus 8 pPGSGK~T~a~~LA~~ygl~~is~gdlLR~~i~~~s~~g~~~~~~~~~-G~lVPdeiv~~li~e~l~~~~~~~G~ILD-G 85 (333)
T PRK13808 8 PPGAGKGTQAQRLVQQYGIVQLSTGDMLRAAVAAGTPVGLKAKDIMAS-GGLVPDEVVVGIISDRIEQPDAANGFILD-G 85 (333)
T ss_pred CCCCCHHHHHHHHHHHhCCceecccHHHHHHhhcCChhhHHHHHHHHc-CCCCCHHHHHHHHHHHHhcccccCCEEEe-C
Confidence 79999999999999999999999999998653 1 3334444433 32222232222222 2322 2345554 4
Q ss_pred CceeeCHhhHH----hc-----cCCeEEEEECCHHHHHHHHhccCCC--CCCccccCCCCChhHHHHHHHHHHHHHH---
Q 029455 72 GGAVTRPINWR----YM-----QKGISVWLDVPLEALAQRIAAVGTD--SRPLLHQCESGDAYTEALNRLSTLWEER--- 137 (193)
Q Consensus 72 ~~~v~~~~~~~----~l-----~~~~vV~L~~~~~~~~~Rl~~~~~~--~R~~~~~~~~~~~~~~~~~~~~~~~~~r--- 137 (193)
++...+..+ .+ ..+++|||++|++++++|+..|... .+.... +.+++.+....++.......
T Consensus 86 --FPRt~~QA~~L~~ll~~~gi~PDlVI~LDVp~evll~Rl~~R~~~~~~rg~~~--R~DD~~E~i~kRL~~Y~~~t~PL 161 (333)
T PRK13808 86 --FPRTVPQAEALDALLKDKQLKLDAVVELRVNEGALLARVETRVAEMRARGEEV--RADDTPEVLAKRLASYRAQTEPL 161 (333)
T ss_pred --CCCCHHHHHHHHHHHHhcCCCcCeEEEEECCHHHHHHHHHcCcccccccCCcc--CCCCCHHHHHHHHHHHHHHhHHH
Confidence 343322111 12 2379999999999999999874210 011111 11222222233332211111
Q ss_pred HHHHhhccceeechhhhhhcccccCCCCCHHHHHHHHHHHHHhhhcccchh
Q 029455 138 GEAYANANARVSLENIAVKLGHKDVSSLTPVTIAIEALEQIEGFLKEEDDM 188 (193)
Q Consensus 138 ~~~y~~~~~~i~~~~~~~~~~~iDt~~~~~~~~~~~i~~~~~~~~~~~~~~ 188 (193)
...|...+.++ .||. ..+++++.++|...|..++..+.-.
T Consensus 162 l~~Y~e~~~lv----------~IDa-~~siEEV~eeI~~~L~~~~~~~~~~ 201 (333)
T PRK13808 162 VHYYSEKRKLL----------TVDG-MMTIDEVTREIGRVLAAVGAANAKK 201 (333)
T ss_pred HHHhhccCcEE----------EEEC-CCCHHHHHHHHHHHHHHHhCCCccc
Confidence 12333322333 4785 6899999999999999887665443
No 24
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=99.58 E-value=1.3e-13 Score=105.83 Aligned_cols=31 Identities=39% Similarity=0.667 Sum_probs=29.0
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHHHHH
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQS 31 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~~~~ 31 (193)
|+||||||+|+.||++|||.|+|++.+++..
T Consensus 12 PagsGKsTvak~lA~~Lg~~yldTGamYRa~ 42 (222)
T COG0283 12 PAGSGKSTVAKILAEKLGFHYLDTGAMYRAV 42 (222)
T ss_pred CCccChHHHHHHHHHHhCCCeecccHHHHHH
Confidence 7899999999999999999999999988754
No 25
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=99.58 E-value=4.6e-14 Score=122.10 Aligned_cols=154 Identities=19% Similarity=0.244 Sum_probs=96.2
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHHHHHh-----CCCCHHH---HHHH-------------hc-------ch-----
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQSV-----DGTSVAE---IFKL-------------YG-------EG----- 47 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~~~~~-----~g~~~~~---~~~~-------------~~-------~~----- 47 (193)
|+||||||+|+.|+++||+.++|.|.+++... .|.+..+ +... .+ ..
T Consensus 292 ~sgsGKst~a~~la~~l~~~~~d~g~~YR~~a~~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~i~~~~~dv~~~i 371 (512)
T PRK13477 292 PAGAGKSTVTRAVAKKLGLLYLDTGAMYRAVTWLVLQEGIDPQDEEALAELLSDLKIELKPSSGSPQRVWINGEDVTEAI 371 (512)
T ss_pred CCCCCHHHHHHHHHHHcCCeEecCCceehHHHHHHHHcCcCCcCHHHHHHHHhcCCeeeccCCCCCceEEeCCcchHhhh
Confidence 69999999999999999999999999887642 2322211 1000 00 00
Q ss_pred ----------------hhHHHHHHHHHHHhccCCcEEEeCC--ceeeCHhhHHhccCCeEEEEECCHHHHHHHHhccCCC
Q 029455 48 ----------------FFREKETEVLQKLSLMRQLVVSTGG--GAVTRPINWRYMQKGISVWLDVPLEALAQRIAAVGTD 109 (193)
Q Consensus 48 ----------------~~~~~e~~~~~~l~~~~~~vi~~g~--~~v~~~~~~~~l~~~~vV~L~~~~~~~~~Rl~~~~~~ 109 (193)
..|..-....+++...++ +|..|- |++..+. .++.|||+||++++.+|...+ ..
T Consensus 372 Rs~eV~~~vS~ia~~p~VR~~l~~~qr~~~~~~~-iV~eGRDigtvV~P~------AdlKIfL~As~evRa~RR~~~-l~ 443 (512)
T PRK13477 372 RSPEVTSSVSAIAAQPAVRQALVKQQQRIGEKGG-LVAEGRDIGTHVFPD------AELKIFLTASVEERARRRALD-LQ 443 (512)
T ss_pred cchhHHHHHHHHhCCHHHHHHHHHHHHHHhhcCC-EEEEcccceeEEcCC------CCEEEEEECCHHHHHHHHHhh-hh
Confidence 001111111122333344 444553 4444432 168999999999999987653 12
Q ss_pred CCCccccCCCCChhHHHHHHHHHHHHHHH---------HHHhhccceeechhhhhhcccccCCCCCHHHHHHHHHHHHHh
Q 029455 110 SRPLLHQCESGDAYTEALNRLSTLWEERG---------EAYANANARVSLENIAVKLGHKDVSSLTPVTIAIEALEQIEG 180 (193)
Q Consensus 110 ~R~~~~~~~~~~~~~~~~~~~~~~~~~r~---------~~y~~~~~~i~~~~~~~~~~~iDt~~~~~~~~~~~i~~~~~~ 180 (193)
.||.... + .+.+.+.+.+|. |+|...+.++ |||++++++++++.|++.+.+
T Consensus 444 ~Rpll~~----~-----~e~i~~~i~eRd~~D~~R~i~PLy~a~dai~-----------IDTs~lsieeVv~~Il~~i~~ 503 (512)
T PRK13477 444 AQGFPVI----D-----LEQLEAQIAERDRLDSTREIAPLRKADDAIE-----------LITDGLSIEEVVDKIIDLYRD 503 (512)
T ss_pred hCCCccC----C-----HHHHHHHHHHHHhhhcccccccccccCCeEE-----------EECCCCCHHHHHHHHHHHHHH
Confidence 4665322 1 356666677777 6676634332 699999999999999999976
Q ss_pred hh
Q 029455 181 FL 182 (193)
Q Consensus 181 ~~ 182 (193)
.+
T Consensus 504 ~~ 505 (512)
T PRK13477 504 RI 505 (512)
T ss_pred hC
Confidence 44
No 26
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=99.57 E-value=5.1e-13 Score=101.51 Aligned_cols=103 Identities=17% Similarity=0.272 Sum_probs=63.0
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHHHHHhC-CCC----HHHHHHHhcchhhHHHHHHHHHHHhcc--CCcEEEeCCc
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVD-GTS----VAEIFKLYGEGFFREKETEVLQKLSLM--RQLVVSTGGG 73 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~~~~~~-g~~----~~~~~~~~~~~~~~~~e~~~~~~l~~~--~~~vi~~g~~ 73 (193)
+|||||||+|+.||+++|+++++++++++.... +.. +.+++ ..|.....+....++...... ...+|..|
T Consensus 7 ~pGsGKst~a~~la~~~~~~~is~~d~lr~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~ll~~~~~~~~~~~~vlDg-- 83 (183)
T TIGR01359 7 GPGSGKGTQCAKIVENFGFTHLSAGDLLRAEIKSGSENGELIESMI-KNGKIVPSEVTVKLLKNAIQADGSKKFLIDG-- 83 (183)
T ss_pred CCCCCHHHHHHHHHHHcCCeEEECChHHHHHHhcCChHHHHHHHHH-HCCCcCCHHHHHHHHHHHHhccCCCcEEEeC--
Confidence 699999999999999999999999888876542 222 22322 223333333333333332221 22234344
Q ss_pred eeeCHhhHH----hc----cCCeEEEEECCHHHHHHHHhcc
Q 029455 74 AVTRPINWR----YM----QKGISVWLDVPLEALAQRIAAV 106 (193)
Q Consensus 74 ~v~~~~~~~----~l----~~~~vV~L~~~~~~~~~Rl~~~ 106 (193)
++....... .+ ..+.+|||++|++++.+|+..|
T Consensus 84 ~p~~~~q~~~~~~~~~~~~~~d~~i~l~~~~~~~~~Rl~~R 124 (183)
T TIGR01359 84 FPRNEENLEAWEKLMDNKVNFKFVLFFDCPEEVMIKRLLKR 124 (183)
T ss_pred CCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcC
Confidence 333332221 12 1368999999999999999975
No 27
>PRK14530 adenylate kinase; Provisional
Probab=99.56 E-value=4.6e-13 Score=104.59 Aligned_cols=102 Identities=18% Similarity=0.216 Sum_probs=66.0
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHHHHHhCCCCHHHHHH---------HhcchhhHHHHHHHHHHHh-ccCCcEEEe
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFK---------LYGEGFFREKETEVLQKLS-LMRQLVVST 70 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~~~~~~g~~~~~~~~---------~~~~~~~~~~e~~~~~~l~-~~~~~vi~~ 70 (193)
+|||||||+|+.||+.+|+++++++++++... +.++.+... ..|..........++.... ....+|+.
T Consensus 11 ~pGsGKsT~~~~La~~~~~~~i~~g~~lr~~~-~~~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~l~~~l~~~~~~Ild- 88 (215)
T PRK14530 11 APGAGKGTQSSNLAEEFGVEHVTTGDALRANK-QMDISDMDTEYDTPGEYMDAGELVPDAVVNEIVEEALSDADGFVLD- 88 (215)
T ss_pred CCCCCHHHHHHHHHHHhCCeEEeccHHHHHhc-cCCcccccchHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCEEEc-
Confidence 69999999999999999999999999998765 332222111 1122122223333444433 23455554
Q ss_pred CCceeeCHhhHHhc---c-CCeEEEEECCHHHHHHHHhcc
Q 029455 71 GGGAVTRPINWRYM---Q-KGISVWLDVPLEALAQRIAAV 106 (193)
Q Consensus 71 g~~~v~~~~~~~~l---~-~~~vV~L~~~~~~~~~Rl~~~ 106 (193)
| ++...+....| . .+.+|||++|.+++.+|+..|
T Consensus 89 G--~pr~~~q~~~l~~~~~~d~vI~Ld~~~~~l~~Rl~~R 126 (215)
T PRK14530 89 G--YPRNLEQAEYLESITDLDVVLYLDVSEEELVDRLTGR 126 (215)
T ss_pred C--CCCCHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHhCC
Confidence 4 44444434333 2 379999999999999999875
No 28
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=99.55 E-value=1.9e-13 Score=102.07 Aligned_cols=147 Identities=12% Similarity=0.125 Sum_probs=85.8
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHHHH-----HhCCCCHHHHHHHhcchhhHHHHHHHHHHHhccCCcEEEeCCcee
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQ-----SVDGTSVAEIFKLYGEGFFREKETEVLQKLSLMRQLVVSTGGGAV 75 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~~~-----~~~g~~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~vi~~g~~~v 75 (193)
||||||||+|+.|++.+|.++++.|.+... ...|.+..+ ...+.++..+...+...+......|+.++ +
T Consensus 6 ~~GsGKSTla~~l~~~l~~~~v~~D~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~Vi~~t---~ 79 (163)
T TIGR01313 6 VAGSGKSTIASALAHRLGAKFIEGDDLHPAANIEKMSAGIPLND---DDRWPWLQNLNDASTAAAAKNKVGIITCS---A 79 (163)
T ss_pred CCCCCHHHHHHHHHHhcCCeEEeCccccChHHHHHHHcCCCCCh---hhHHHHHHHHHHHHHHHHhcCCCEEEEec---c
Confidence 699999999999999999999999997422 111332221 12233344443333333333334466655 3
Q ss_pred eCHhhHHhccC----CeEEEEECCHHHHHHHHhccCCCCCCccccCCCCChhHHHHHHHHHHHHHHH-HHHhhccceeec
Q 029455 76 TRPINWRYMQK----GISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERG-EAYANANARVSL 150 (193)
Q Consensus 76 ~~~~~~~~l~~----~~vV~L~~~~~~~~~Rl~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~r~-~~y~~~~~~i~~ 150 (193)
+....+..++. ..+|||++|++++.+|+..| +.. . ++ .+.+...+.... +.+..++.+
T Consensus 80 ~~~~~r~~~~~~~~~~~~i~l~~~~e~~~~R~~~R-----~~~-~-~~-------~~~i~~~~~~~~~~~~~e~~~~--- 142 (163)
T TIGR01313 80 LKRHYRDILREAEPNLHFIYLSGDKDVILERMKAR-----KGH-F-MK-------ADMLESQFAALEEPLADETDVL--- 142 (163)
T ss_pred cHHHHHHHHHhcCCCEEEEEEeCCHHHHHHHHHhc-----cCC-C-CC-------HHHHHHHHHHhCCCCCCCCceE---
Confidence 34444444431 35799999999999999874 210 1 00 133433332211 111112333
Q ss_pred hhhhhhcccccCCCCCHHHHHHHHHHHHH
Q 029455 151 ENIAVKLGHKDVSSLTPVTIAIEALEQIE 179 (193)
Q Consensus 151 ~~~~~~~~~iDt~~~~~~~~~~~i~~~~~ 179 (193)
+||++ .+++++.+.|.+.+-
T Consensus 143 --------~id~~-~~~~~~~~~~~~~~~ 162 (163)
T TIGR01313 143 --------RVDID-QPLEGVEEDCIAVVL 162 (163)
T ss_pred --------EEECC-CCHHHHHHHHHHHHh
Confidence 47974 789999999888764
No 29
>PRK09169 hypothetical protein; Validated
Probab=99.54 E-value=1.5e-13 Score=131.50 Aligned_cols=139 Identities=15% Similarity=0.068 Sum_probs=114.7
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHHHHHhCCCCHHHHHHHhcchhhHHHHHHHHHHHhccCCcEEEeCCceeeCHhh
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFREKETEVLQKLSLMRQLVVSTGGGAVTRPIN 80 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~~~~~~g~~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~vi~~g~~~v~~~~~ 80 (193)
++|+|||||++.|++.|++.++|+|..+.... |+++.++|...| .|++.+...+..+.. ...||.+|+|.+..+++
T Consensus 2118 ~MGaGKTTIGr~LA~~Lg~~FiDtD~kIeks~-GrkI~rIFa~eG--~FRe~Eaa~V~Dllr-~~vVLSTGGGav~~~en 2193 (2316)
T PRK09169 2118 EVGPLLQALLQKLAGGLRVDKPHSVRKIAKKI-GKKIARIQALRG--LSPEQAAARVRDALR-WEVVLPAEGFGAAVEQA 2193 (2316)
T ss_pred CCCCCHhHHHHHHHHHhCCCccccHHHHHHHh-CCCHHHHHHhcC--chHHHHHHHHHHHhc-CCeEEeCCCCcccCHHH
Confidence 68999999999999999999999999999988 999999999888 799998888888775 67899999999999999
Q ss_pred HHhcc-CCeEEEEECCHHHHHHHHhccCCCCCCccccCCCCCh-hHH--HHHHHHHHHHHHHHHHhh-cccee
Q 029455 81 WRYMQ-KGISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDA-YTE--ALNRLSTLWEERGEAYAN-ANARV 148 (193)
Q Consensus 81 ~~~l~-~~~vV~L~~~~~~~~~Rl~~~~~~~R~~~~~~~~~~~-~~~--~~~~~~~~~~~r~~~y~~-~~~~i 148 (193)
+..|. .+++||+..+.+++.+|+... .+||+... .+. |+- ......+++.+|.+.|+. ++..|
T Consensus 2194 r~~L~~~GlvV~L~an~~tl~~Rty~g--~NRPLL~~---~~~~FEiQFHT~esl~Lk~eRhpLYEqvADl~V 2261 (2316)
T PRK09169 2194 RQALGAKGLRVMRINNGFAAPDTTYAG--LNVNLRTA---AGLDFEIQFHTADSLRTKNKTHKLYEKLQDLEV 2261 (2316)
T ss_pred HHHHHHCCEEEEEECCHHHHHHHhccC--CCCccccC---CCCccchhccHHHHHHHHHHhHHHHHHhcCccc
Confidence 99887 489999999999999999863 57887654 111 000 013344567789999987 77776
No 30
>PRK05541 adenylylsulfate kinase; Provisional
Probab=99.54 E-value=1.3e-14 Score=109.75 Aligned_cols=149 Identities=19% Similarity=0.129 Sum_probs=88.1
Q ss_pred CCCCchHHHHHHHHHhcC-----CcEeechHHHHHHh-CCCCHHHHHHHhcchhhHHHHHHHHHHHhccCCcEEEeCCce
Q 029455 1 MMGSGKTTVGKILSGVLG-----YSFFDCDTLIEQSV-DGTSVAEIFKLYGEGFFREKETEVLQKLSLMRQLVVSTGGGA 74 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg-----~~~~d~d~~~~~~~-~g~~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~vi~~g~~~ 74 (193)
+|||||||+++.|++.++ ..+++.|.+.+... .|..... . ..... ....+...+...+..||+++.+.
T Consensus 15 ~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~r~~~~~~~~~~~~---~--~~~~~-~~~~l~~~l~~~g~~VI~~~~~~ 88 (176)
T PRK05541 15 LAGSGKTTIAKALYERLKLKYSNVIYLDGDELREILGHYGYDKQS---R--IEMAL-KRAKLAKFLADQGMIVIVTTISM 88 (176)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCcEEEEecHHHHhhcCCCCCCHHH---H--HHHHH-HHHHHHHHHHhCCCEEEEEeCCc
Confidence 689999999999999886 67888888644221 0211100 0 01111 11111222333455677766443
Q ss_pred e--eCHhhHHhccCCeEEEEECCHHHHHHHHhccCCCCCCccccCCCCChhHHHHHHHHHHHHHHHHHHhh-ccceeech
Q 029455 75 V--TRPINWRYMQKGISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYAN-ANARVSLE 151 (193)
Q Consensus 75 v--~~~~~~~~l~~~~vV~L~~~~~~~~~Rl~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~r~~~y~~-~~~~i~~~ 151 (193)
+ +...++..+....+|||+||++++.+|+. ||..... ..+.+.+++..+.+.|.. +|.+|
T Consensus 89 ~~~~~~~~~~~~~~~~~v~l~~~~e~~~~R~~------~~l~~~~--------~~~~~~~~~~~~~~~~~~~Ad~vI--- 151 (176)
T PRK05541 89 FDEIYAYNRKHLPNYFEVYLKCDMEELIRRDQ------KGLYTKA--------LKGEIKNVVGVDIPFDEPKADLVI--- 151 (176)
T ss_pred HHHHHHHHHhhcCCeEEEEEeCCHHHHHHhch------hhHHHHH--------HcCcccccccCCCcccCCCCCEEE---
Confidence 2 12222223334678999999999999985 3322110 113355566677777765 77765
Q ss_pred hhhhhcccccCCC-CCHHHHHHHHHHHHHhh
Q 029455 152 NIAVKLGHKDVSS-LTPVTIAIEALEQIEGF 181 (193)
Q Consensus 152 ~~~~~~~~iDt~~-~~~~~~~~~i~~~~~~~ 181 (193)
||+. .+++++++.|...+.+.
T Consensus 152 ---------~~~~~~~~~~~v~~i~~~l~~~ 173 (176)
T PRK05541 152 ---------DNSCRTSLDEKVDLILNKLKLR 173 (176)
T ss_pred ---------eCCCCCCHHHHHHHHHHHHHHh
Confidence 6665 59999999999887554
No 31
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=99.53 E-value=8.2e-13 Score=100.51 Aligned_cols=159 Identities=14% Similarity=0.186 Sum_probs=87.1
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHHHHHhCC-CC----HHHHHHHhcchhhHHHHHHHH-HHHh---ccCCcEEEeC
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDG-TS----VAEIFKLYGEGFFREKETEVL-QKLS---LMRQLVVSTG 71 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~~~~~~g-~~----~~~~~~~~~~~~~~~~e~~~~-~~l~---~~~~~vi~~g 71 (193)
+|||||||+|+.|++.+|+.+++++++++....+ .. +..++. .+...........+ ..+. ..+..+|..|
T Consensus 11 ~~GsGKsTl~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~dg 89 (188)
T TIGR01360 11 GPGSGKGTQCEKIVEKYGFTHLSTGDLLRAEVASGSERGKQLQAIME-SGDLVPLDTVLDLLKDAMVAALGTSKGFLIDG 89 (188)
T ss_pred CCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHcccCcCCeEEEeC
Confidence 6999999999999999999999999988764312 11 112221 12111111101111 1111 1233344444
Q ss_pred CceeeCHhhHHh----cc-CCeEEEEECCHHHHHHHHhccCC-CCCCccccCCCCChhHHHHHHHHHHHHHHHHH---Hh
Q 029455 72 GGAVTRPINWRY----MQ-KGISVWLDVPLEALAQRIAAVGT-DSRPLLHQCESGDAYTEALNRLSTLWEERGEA---YA 142 (193)
Q Consensus 72 ~~~v~~~~~~~~----l~-~~~vV~L~~~~~~~~~Rl~~~~~-~~R~~~~~~~~~~~~~~~~~~~~~~~~~r~~~---y~ 142 (193)
++........ +. .+.+|||++|++++.+|+..|.. ..|. .+..+...+++...+..+.+. |.
T Consensus 90 --~~~~~~q~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~~~r~-------d~~~~~~~~r~~~~~~~~~~~~~~y~ 160 (188)
T TIGR01360 90 --YPREVKQGEEFERRIGPPTLVLYFDCSEDTMVKRLLKRAETSGRV-------DDNEKTIKKRLETYYKATEPVIAYYE 160 (188)
T ss_pred --CCCCHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcccccCCCC-------CCCHHHHHHHHHHHHHhhHHHHHHHH
Confidence 2222111111 22 36899999999999999987531 1122 111112344555555444443 33
Q ss_pred hccceeechhhhhhcccccCCCCCHHHHHHHHHHHHHh
Q 029455 143 NANARVSLENIAVKLGHKDVSSLTPVTIAIEALEQIEG 180 (193)
Q Consensus 143 ~~~~~i~~~~~~~~~~~iDt~~~~~~~~~~~i~~~~~~ 180 (193)
..+..+ +||+ ..+++++.+.|...+..
T Consensus 161 ~~~~~~----------~id~-~~~~~~v~~~i~~~l~~ 187 (188)
T TIGR01360 161 TKGKLR----------KINA-EGTVDDVFLQVCTAIDK 187 (188)
T ss_pred hCCCEE----------EEEC-CCCHHHHHHHHHHHHhc
Confidence 222222 3675 59999999999988864
No 32
>PRK14531 adenylate kinase; Provisional
Probab=99.51 E-value=5.6e-13 Score=101.63 Aligned_cols=153 Identities=18% Similarity=0.196 Sum_probs=83.5
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHHHHHh-CCCCH----HHHHHHhcchhhHHHHHHHH-HHHhc--cCCcEEEeCC
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQSV-DGTSV----AEIFKLYGEGFFREKETEVL-QKLSL--MRQLVVSTGG 72 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~~~~~-~g~~~----~~~~~~~~~~~~~~~e~~~~-~~l~~--~~~~vi~~g~ 72 (193)
+|||||||+|+.||+.+|+++++++++++... .+..+ .++. ..|....-.+-..++ ..+.. ...+|+ .|
T Consensus 10 ~pGsGKsT~~~~la~~~g~~~is~gd~lr~~~~~~~~~~~~~~~~~-~~G~~v~d~l~~~~~~~~l~~~~~~g~il-DG- 86 (183)
T PRK14531 10 PPGAGKGTQAARLCAAHGLRHLSTGDLLRSEVAAGSALGQEAEAVM-NRGELVSDALVLAIVESQLKALNSGGWLL-DG- 86 (183)
T ss_pred CCCCCHHHHHHHHHHHhCCCeEecccHHHHHHhcCCHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHhhccCCcEEE-eC-
Confidence 69999999999999999999999988887543 23222 2221 223222222211222 22322 234555 34
Q ss_pred ceeeCHhhHH----hcc----C-CeEEEEECCHHHHHHHHhccCCCCCCccccCCCCChhHHHHHHHHHHHHHHHH---H
Q 029455 73 GAVTRPINWR----YMQ----K-GISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGE---A 140 (193)
Q Consensus 73 ~~v~~~~~~~----~l~----~-~~vV~L~~~~~~~~~Rl~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~r~~---~ 140 (193)
++....... .+. . +.+|||+||++++.+|+..| .|+ +|..+....++........+ .
T Consensus 87 -fpr~~~q~~~~~~~~~~~~~~~~~vi~l~~~~~~l~~Rl~~R---~r~-------dD~~e~i~~Rl~~y~~~~~pv~~~ 155 (183)
T PRK14531 87 -FPRTVAQAEALEPLLEELKQPIEAVVLLELDDAVLIERLLAR---GRA-------DDNEAVIRNRLEVYREKTAPLIDH 155 (183)
T ss_pred -CCCCHHHHHHHHHHHHHcCCCCCeEEEEECCHHHHHHHhhcC---CCC-------CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 343332221 121 2 57999999999999999874 232 11110112223222222222 2
Q ss_pred HhhccceeechhhhhhcccccCCCCCHHHHHHHHHHHH
Q 029455 141 YANANARVSLENIAVKLGHKDVSSLTPVTIAIEALEQI 178 (193)
Q Consensus 141 y~~~~~~i~~~~~~~~~~~iDt~~~~~~~~~~~i~~~~ 178 (193)
|..-+. ...||. ..+++++.+.|...+
T Consensus 156 y~~~~~----------~~~id~-~~~~~~v~~~i~~~l 182 (183)
T PRK14531 156 YRQRGL----------LQSVEA-QGSIEAITERIEKVL 182 (183)
T ss_pred HHhcCC----------EEEEEC-CCCHHHHHHHHHHHh
Confidence 222122 224785 589999999988765
No 33
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=99.50 E-value=1.4e-13 Score=102.12 Aligned_cols=146 Identities=23% Similarity=0.293 Sum_probs=85.7
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHHHHHhCCCCHHHHHHHhcchhhHHH--HHHHHHHHhccCCcEEEeCCceeeCH
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFREK--ETEVLQKLSLMRQLVVSTGGGAVTRP 78 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~~~~~~g~~~~~~~~~~~~~~~~~~--e~~~~~~l~~~~~~vi~~g~~~v~~~ 78 (193)
.||+||||+|++|+ .+|+.++++.+++++. |.... ++........+. -...+..+....+.|+.++-.
T Consensus 8 TPGvGKTT~~~~L~-~lg~~~i~l~el~~e~--~~~~~--~de~r~s~~vD~d~~~~~le~~~~~~~~Ivd~H~~----- 77 (180)
T COG1936 8 TPGVGKTTVCKLLR-ELGYKVIELNELAKEN--GLYTE--YDELRKSVIVDVDKLRKRLEELLREGSGIVDSHLS----- 77 (180)
T ss_pred CCCCchHHHHHHHH-HhCCceeeHHHHHHhc--CCeec--cCCccceEEeeHHHHHHHHHHHhccCCeEeechhh-----
Confidence 49999999999999 8999999999988765 21100 000000111111 011222222334566664411
Q ss_pred hhHHhcc-CCeEEEEECCHHHHHHHHhccCCCCCCccccCCCCChhHHHHHHHHHHHHHHHHHHhhccceeechhhhhhc
Q 029455 79 INWRYMQ-KGISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVSLENIAVKL 157 (193)
Q Consensus 79 ~~~~~l~-~~~vV~L~~~~~~~~~Rl~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~r~~~y~~~~~~i~~~~~~~~~ 157 (193)
..++ .+++|.|+|+++++.+||+.|+...-....+ . ..+.+.-.+.+... ..+.++
T Consensus 78 ---hl~~~~dlVvVLR~~p~~L~~RLk~RGy~~eKI~EN------v--eAEi~~vi~~EA~E---~~~~v~--------- 134 (180)
T COG1936 78 ---HLLPDCDLVVVLRADPEVLYERLKGRGYSEEKILEN------V--EAEILDVILIEAVE---RFEAVI--------- 134 (180)
T ss_pred ---hcCCCCCEEEEEcCCHHHHHHHHHHcCCCHHHHHHH------H--HHHHHHHHHHHHHH---hcCceE---------
Confidence 1233 2799999999999999999854322222221 0 11223233332222 224444
Q ss_pred ccccCCCCCHHHHHHHHHHHHHh
Q 029455 158 GHKDVSSLTPVTIAIEALEQIEG 180 (193)
Q Consensus 158 ~~iDt~~~~~~~~~~~i~~~~~~ 180 (193)
.|||++.+++++++.|.+.+..
T Consensus 135 -evdtt~~s~ee~~~~i~~ii~~ 156 (180)
T COG1936 135 -EVDTTNRSPEEVAEEIIDIIGG 156 (180)
T ss_pred -EEECCCCCHHHHHHHHHHHHcc
Confidence 3799999999999999999984
No 34
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=99.50 E-value=1.4e-13 Score=105.23 Aligned_cols=152 Identities=19% Similarity=0.142 Sum_probs=85.2
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHHHHHhC-------CCCHHHHHHHhcchhhHHHH----------HHHHHHHhcc
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVD-------GTSVAEIFKLYGEGFFREKE----------TEVLQKLSLM 63 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~~~~~~-------g~~~~~~~~~~~~~~~~~~e----------~~~~~~l~~~ 63 (193)
|+||||||+++.|+..++..+++.+..+....+ +....+++.......+...+ .. +......
T Consensus 10 ~sGsGKsTl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~yg~~~~-~~~~l~~ 88 (186)
T PRK10078 10 PSGSGKDSLLAALRQREQTQLLVAHRYITRPASAGSENHIALSEQEFFTRAGQNLFALSWHANGLYYGVGIE-IDLWLHA 88 (186)
T ss_pred CCCCCHHHHHHHHhccCCCeEEEcCEECCCccchhHHhheeEcHHHHHHHHHCCchhhHHHHhCCccCCcHH-HHHHHhC
Confidence 799999999999999888777776664432210 11112211110000111000 01 2222233
Q ss_pred CCcEEEeCCceeeCHhhHHhccC-CeEEEEECCHHHHHHHHhccCCCCCCccccCCCCChhHHHHHHHHHHHHHHHHHHh
Q 029455 64 RQLVVSTGGGAVTRPINWRYMQK-GISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYA 142 (193)
Q Consensus 64 ~~~vi~~g~~~v~~~~~~~~l~~-~~vV~L~~~~~~~~~Rl~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~r~~~y~ 142 (193)
+..||..|+... .......+.. ..+|||++|.+++.+|+..| .|+. .+.+...+ .+.+.|.
T Consensus 89 g~~VI~~G~~~~-~~~~~~~~~~~~~vi~l~~s~e~l~~RL~~R---~~~~-------------~~~i~~rl-~r~~~~~ 150 (186)
T PRK10078 89 GFDVLVNGSRAH-LPQARARYQSALLPVCLQVSPEILRQRLENR---GREN-------------ASEINARL-ARAARYQ 150 (186)
T ss_pred CCEEEEeChHHH-HHHHHHHcCCCEEEEEEeCCHHHHHHHHHHh---CCCC-------------HHHHHHHH-HHhhhhc
Confidence 445665553222 2223333433 57899999999999999863 2331 12244433 3445566
Q ss_pred hccceeechhhhhhcccccCCCCCHHHHHHHHHHHHHhhhc
Q 029455 143 NANARVSLENIAVKLGHKDVSSLTPVTIAIEALEQIEGFLK 183 (193)
Q Consensus 143 ~~~~~i~~~~~~~~~~~iDt~~~~~~~~~~~i~~~~~~~~~ 183 (193)
.++.++ || ++.++++++++|.+.+....+
T Consensus 151 ~ad~~v-----------i~-~~~s~ee~~~~i~~~l~~~~~ 179 (186)
T PRK10078 151 PQDCHT-----------LN-NDGSLRQSVDTLLTLLHLSQK 179 (186)
T ss_pred cCCEEE-----------Ee-CCCCHHHHHHHHHHHHhhcCc
Confidence 667443 46 458999999999988876543
No 35
>PLN02674 adenylate kinase
Probab=99.48 E-value=3.9e-12 Score=100.78 Aligned_cols=102 Identities=15% Similarity=0.191 Sum_probs=68.9
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHHHHHhC-----CCCHHHHHHHhcchhhHHHHHHHHHHHhcc----CCcEEEeC
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVD-----GTSVAEIFKLYGEGFFREKETEVLQKLSLM----RQLVVSTG 71 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~~~~~~-----g~~~~~~~~~~~~~~~~~~e~~~~~~l~~~----~~~vi~~g 71 (193)
||||||||+|+.||+++|+++++++++++.... |..+.+++. .|...+.++...++.+.... ..+|+ .|
T Consensus 39 ~PGsGKgT~a~~La~~~~~~his~GdllR~~i~~~s~~g~~i~~~~~-~G~lvpd~iv~~lv~~~l~~~~~~~g~il-DG 116 (244)
T PLN02674 39 PPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMD-KGELVSDDLVVGIIDEAMKKPSCQKGFIL-DG 116 (244)
T ss_pred CCCCCHHHHHHHHHHHcCCcEEchhHHHHHHHhccChhhHHHHHHHH-cCCccCHHHHHHHHHHHHhCcCcCCcEEE-eC
Confidence 799999999999999999999999999987631 444555553 56666665544444443321 23333 33
Q ss_pred CceeeCHhhHH----hcc-----CCeEEEEECCHHHHHHHHhcc
Q 029455 72 GGAVTRPINWR----YMQ-----KGISVWLDVPLEALAQRIAAV 106 (193)
Q Consensus 72 ~~~v~~~~~~~----~l~-----~~~vV~L~~~~~~~~~Rl~~~ 106 (193)
++....... .+. .+.+|+|++|.+++++|+..|
T Consensus 117 --fPRt~~Qa~~l~~~l~~~~~~~d~vi~l~v~~~~l~~Rl~gR 158 (244)
T PLN02674 117 --FPRTVVQAQKLDEMLAKQGAKIDKVLNFAIDDAILEERITGR 158 (244)
T ss_pred --CCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcc
Confidence 343322111 221 268999999999999999875
No 36
>PLN02200 adenylate kinase family protein
Probab=99.48 E-value=6.5e-12 Score=99.36 Aligned_cols=160 Identities=15% Similarity=0.179 Sum_probs=88.1
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHHHHHhCCCC-----HHHHHHHhcchhhHHHHHHHHH-HHhc--cCCcEEEeCC
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTS-----VAEIFKLYGEGFFREKETEVLQ-KLSL--MRQLVVSTGG 72 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~~~~~~g~~-----~~~~~~~~~~~~~~~~e~~~~~-~l~~--~~~~vi~~g~ 72 (193)
+|||||||+|+.|++++|++++++++++++...+.+ +.+.+ ..|.....++...++. .+.. ..++|+ .|
T Consensus 51 ~PGSGKsT~a~~La~~~g~~his~gdllR~~i~~~s~~~~~i~~~~-~~G~~vp~e~~~~~l~~~l~~~~~~~~IL-DG- 127 (234)
T PLN02200 51 GPGSGKGTQCEKIVETFGFKHLSAGDLLRREIASNSEHGAMILNTI-KEGKIVPSEVTVKLIQKEMESSDNNKFLI-DG- 127 (234)
T ss_pred CCCCCHHHHHHHHHHHhCCeEEEccHHHHHHHhccChhHHHHHHHH-HcCCCCcHHHHHHHHHHHHhcCCCCeEEe-cC-
Confidence 699999999999999999999999998876441211 11221 1232222222222222 2221 223444 34
Q ss_pred ceeeCHhhHHhc----c--CCeEEEEECCHHHHHHHHhccCCCCCCccccCCCCChhHHHHHHHHHHHHHH---HHHHhh
Q 029455 73 GAVTRPINWRYM----Q--KGISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEER---GEAYAN 143 (193)
Q Consensus 73 ~~v~~~~~~~~l----~--~~~vV~L~~~~~~~~~Rl~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~r---~~~y~~ 143 (193)
++........+ . .+.+|||++|++++.+|+..|.. .|. ++..+...+++....... ...|+.
T Consensus 128 -~Prt~~q~~~l~~~~~~~pd~vi~Ld~~~e~~~~Rl~~R~~-~r~-------dd~~e~~~~Rl~~y~~~~~pv~~~y~~ 198 (234)
T PLN02200 128 -FPRTEENRIAFERIIGAEPNVVLFFDCPEEEMVKRVLNRNQ-GRV-------DDNIDTIKKRLKVFNALNLPVIDYYSK 198 (234)
T ss_pred -CcccHHHHHHHHHHhccCCCEEEEEECCHHHHHHHHHcCcC-CCC-------CCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333322222 1 37899999999999999987421 222 111111122222111111 123333
Q ss_pred ccceeechhhhhhcccccCCCCCHHHHHHHHHHHHHhhhc
Q 029455 144 ANARVSLENIAVKLGHKDVSSLTPVTIAIEALEQIEGFLK 183 (193)
Q Consensus 144 ~~~~i~~~~~~~~~~~iDt~~~~~~~~~~~i~~~~~~~~~ 183 (193)
.+.++ .||+ ..+++++.+.|...+....+
T Consensus 199 ~~~~~----------~IDa-~~~~eeV~~~v~~~l~~~~~ 227 (234)
T PLN02200 199 KGKLY----------TINA-VGTVDEIFEQVRPIFAACEA 227 (234)
T ss_pred cCCEE----------EEEC-CCCHHHHHHHHHHHHHHcCC
Confidence 22222 4786 47999999999998877654
No 37
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=99.47 E-value=5.6e-12 Score=98.13 Aligned_cols=102 Identities=21% Similarity=0.262 Sum_probs=62.1
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHHHHHhCC-----CCHHHHHHHhcchhhHHHHHHHH-HHHhc----cCCcEEEe
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDG-----TSVAEIFKLYGEGFFREKETEVL-QKLSL----MRQLVVST 70 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~~~~~~g-----~~~~~~~~~~~~~~~~~~e~~~~-~~l~~----~~~~vi~~ 70 (193)
+|||||||+|+.|++++|+++++++++++..... ..+.+++ ..|.....++...++ ..+.. ...+|+ .
T Consensus 7 ~pGsGKsT~a~~La~~~g~~~is~gdllr~~~~~~~~~~~~~~~~~-~~g~~vp~~~~~~l~~~~i~~~~~~~~~~il-D 84 (210)
T TIGR01351 7 PPGSGKGTQAKRIAEKYGLPHISTGDLLRAEIKAGTPLGKKAKEYM-EKGELVPDEIVNQLVKERLTQNQDNENGFIL-D 84 (210)
T ss_pred CCCCCHHHHHHHHHHHcCCCeeehhHHHHHhhccccHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHhcCcccCCcEEE-e
Confidence 6999999999999999999999999988765421 1122222 123222222212222 22322 124444 3
Q ss_pred CCceeeCHhhHHh----cc--CCeEEEEECCHHHHHHHHhcc
Q 029455 71 GGGAVTRPINWRY----MQ--KGISVWLDVPLEALAQRIAAV 106 (193)
Q Consensus 71 g~~~v~~~~~~~~----l~--~~~vV~L~~~~~~~~~Rl~~~ 106 (193)
| ++........ +. .+.+|+|++|.+++.+|+..|
T Consensus 85 G--fPrt~~Qa~~l~~~~~~~~~~vi~L~~~~~~~~~Rl~~R 124 (210)
T TIGR01351 85 G--FPRTLSQAEALDALLKEKIDAVIELDVPDEELVERLSGR 124 (210)
T ss_pred C--CCCCHHHHHHHHHHhccCCCEEEEEECCHHHHHHHHHCC
Confidence 4 3333222222 22 378999999999999999975
No 38
>PRK06762 hypothetical protein; Provisional
Probab=99.47 E-value=1.2e-12 Score=98.10 Aligned_cols=144 Identities=17% Similarity=0.149 Sum_probs=85.5
Q ss_pred CCCCchHHHHHHHHHhc--CCcEeechHHHHHHhCCCCHHHHHHHhcchhhHHHHHHHHHHHhccCCcEEEeCCceeeCH
Q 029455 1 MMGSGKTTVGKILSGVL--GYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFREKETEVLQKLSLMRQLVVSTGGGAVTRP 78 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l--g~~~~d~d~~~~~~~~g~~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~vi~~g~~~v~~~ 78 (193)
+|||||||+|+.|++.+ ++.+++.|.+......+.. ..+......+ ..........+..||..+. ....
T Consensus 10 ~~GsGKST~A~~L~~~l~~~~~~i~~D~~r~~l~~~~~------~~~~~~~~~~-~~~~~~~~~~g~~vild~~--~~~~ 80 (166)
T PRK06762 10 NSGSGKTTIAKQLQERLGRGTLLVSQDVVRRDMLRVKD------GPGNLSIDLI-EQLVRYGLGHCEFVILEGI--LNSD 80 (166)
T ss_pred CCCCCHHHHHHHHHHHhCCCeEEecHHHHHHHhccccC------CCCCcCHHHH-HHHHHHHHhCCCEEEEchh--hccH
Confidence 69999999999999998 5778898887765431110 0011111111 1122223334444554432 1111
Q ss_pred h---hHHhcc-----CCeEEEEECCHHHHHHHHhccCCCCCCccccCCCCChhHHHHHHHHHHHHHHHHHHhhccceeec
Q 029455 79 I---NWRYMQ-----KGISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVSL 150 (193)
Q Consensus 79 ~---~~~~l~-----~~~vV~L~~~~~~~~~Rl~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~r~~~y~~~~~~i~~ 150 (193)
. .+..+. +..+|||++|.+++.+|+.+| +.... . ..+.+...+.++...+ .++.++
T Consensus 81 ~~~~~~~~l~~~~~~~~~~v~Ldap~e~~~~R~~~R-----~~~~~---~-----~~~~l~~~~~~~~~~~-~~~~~~-- 144 (166)
T PRK06762 81 RYGPMLKELIHLFRGNAYTYYFDLSFEETLRRHSTR-----PKSHE---F-----GEDDMRRWWNPHDTLG-VIGETI-- 144 (166)
T ss_pred hHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHhcc-----ccccc---C-----CHHHHHHHHhhcCCcC-CCCeEE--
Confidence 1 122221 147999999999999999874 32211 0 1255666676665554 245554
Q ss_pred hhhhhhcccccCCCCCHHHHHHHHHHHHH
Q 029455 151 ENIAVKLGHKDVSSLTPVTIAIEALEQIE 179 (193)
Q Consensus 151 ~~~~~~~~~iDt~~~~~~~~~~~i~~~~~ 179 (193)
+|++.+++++++.|+..+.
T Consensus 145 ----------~~~~~~~~~v~~~i~~~~~ 163 (166)
T PRK06762 145 ----------FTDNLSLKDIFDAILTDIG 163 (166)
T ss_pred ----------ecCCCCHHHHHHHHHHHhc
Confidence 6788999999999998875
No 39
>PRK01184 hypothetical protein; Provisional
Probab=99.47 E-value=5.8e-12 Score=95.89 Aligned_cols=152 Identities=20% Similarity=0.185 Sum_probs=83.2
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHHHHHh--CCCCHHHHHHHhcchhh--HH------HHHHHHHHHhc-cCCcEEE
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQSV--DGTSVAEIFKLYGEGFF--RE------KETEVLQKLSL-MRQLVVS 69 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~~~~~--~g~~~~~~~~~~~~~~~--~~------~e~~~~~~l~~-~~~~vi~ 69 (193)
+|||||||+++ +++++|++++++++++++.. .+.+ .+....|.... +. ....+...+.. ....|+.
T Consensus 9 ~~GsGKsT~a~-~~~~~g~~~i~~~d~lr~~~~~~~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~vvi 85 (184)
T PRK01184 9 MPGSGKGEFSK-IAREMGIPVVVMGDVIREEVKKRGLE--PTDENIGKVAIDLRKELGMDAVAKRTVPKIREKGDEVVVI 85 (184)
T ss_pred CCCCCHHHHHH-HHHHcCCcEEEhhHHHHHHHHHcCCC--CCcHHHHHHHHHHHHHHChHHHHHHHHHHHHhcCCCcEEE
Confidence 69999999998 67889999999988777653 1321 01111111111 10 00111122222 2344555
Q ss_pred eCCceeeCHhhHH----hcc-CCeEEEEECCHHHHHHHHhccCCCCCCccccCCCCChhHHHHHHHHHHHHHH-----HH
Q 029455 70 TGGGAVTRPINWR----YMQ-KGISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEER-----GE 139 (193)
Q Consensus 70 ~g~~~v~~~~~~~----~l~-~~~vV~L~~~~~~~~~Rl~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~r-----~~ 139 (193)
.|. ......+ .+. ...+|+|+||++++.+|+..| .|+. . .. ..+.+....... ..
T Consensus 86 dg~---r~~~e~~~~~~~~~~~~~~i~v~~~~~~~~~Rl~~R---~~~~--d---~~----~~~~~~~r~~~q~~~~~~~ 150 (184)
T PRK01184 86 DGV---RGDAEVEYFRKEFPEDFILIAIHAPPEVRFERLKKR---GRSD--D---PK----SWEELEERDERELSWGIGE 150 (184)
T ss_pred eCC---CCHHHHHHHHHhCCcccEEEEEECCHHHHHHHHHHc---CCCC--C---hh----hHHHHHHHHHHHhccCHHH
Confidence 442 1211121 232 258999999999999999874 2321 0 00 122333222221 12
Q ss_pred HHhhccceeechhhhhhcccccCCCCCHHHHHHHHHHHHHhhhc
Q 029455 140 AYANANARVSLENIAVKLGHKDVSSLTPVTIAIEALEQIEGFLK 183 (193)
Q Consensus 140 ~y~~~~~~i~~~~~~~~~~~iDt~~~~~~~~~~~i~~~~~~~~~ 183 (193)
.+..+|.+| |+ +.+.+++...|...+...+.
T Consensus 151 ~~~~ad~vI------------~N-~~~~~~l~~~v~~~~~~~~~ 181 (184)
T PRK01184 151 VIALADYMI------------VN-DSTLEEFRARVRKLLERILR 181 (184)
T ss_pred HHHhcCEEE------------eC-CCCHHHHHHHHHHHHHHHhc
Confidence 444578776 53 45899999999988876554
No 40
>KOG3079 consensus Uridylate kinase/adenylate kinase [Nucleotide transport and metabolism]
Probab=99.46 E-value=4.3e-12 Score=94.99 Aligned_cols=163 Identities=17% Similarity=0.191 Sum_probs=96.5
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHHHHHh-C-C----CCHHHHHHHhcchhhHHHHHHHHHH-Hhcc--CCcEEEeC
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQSV-D-G----TSVAEIFKLYGEGFFREKETEVLQK-LSLM--RQLVVSTG 71 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~~~~~-~-g----~~~~~~~~~~~~~~~~~~e~~~~~~-l~~~--~~~vi~~g 71 (193)
.|||||-|+|..+++++||.|++++++.++.. + | .-+.+++ +.|......+-..++.. +.+. .+.++..|
T Consensus 16 GPGsgKgTqC~kiv~ky~ftHlSaGdLLR~E~~~~gse~g~~I~~~i-~~G~iVP~ei~~~LL~~am~~~~~~~~fLIDG 94 (195)
T KOG3079|consen 16 GPGSGKGTQCEKIVEKYGFTHLSAGDLLRAEIASAGSERGALIKEII-KNGDLVPVEITLSLLEEAMRSSGDSNGFLIDG 94 (195)
T ss_pred CCCCCcchHHHHHHHHcCceeecHHHHHHHHHccccChHHHHHHHHH-HcCCcCcHHHHHHHHHHHHHhcCCCCeEEecC
Confidence 59999999999999999999999999998765 1 2 1233433 23444444333333332 3222 12244444
Q ss_pred CceeeCHhhHHhc----c--CCeEEEEECCHHHHHHHHhccCCCCCCccccCCCCChhHHHHHHHHHHHHHHHHHHhhcc
Q 029455 72 GGAVTRPINWRYM----Q--KGISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANAN 145 (193)
Q Consensus 72 ~~~v~~~~~~~~l----~--~~~vV~L~~~~~~~~~Rl~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~r~~~y~~~~ 145 (193)
++-..++...+ + .++++|++|+.+++++|+..|+..++ +. +|+-+....++........|
T Consensus 95 --yPR~~~q~~~fe~~i~~~~~fvl~fdc~ee~~l~Rll~R~q~~~---R~---DDn~esikkR~et~~~~t~P------ 160 (195)
T KOG3079|consen 95 --YPRNVDQLVEFERKIQGDPDFVLFFDCPEETMLKRLLHRGQSNS---RS---DDNEESIKKRLETYNKSTLP------ 160 (195)
T ss_pred --CCCChHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHhhcccCC---CC---CCchHHHHHHHHHHHHcchH------
Confidence 55555544332 3 27999999999999999998642211 11 33222333333333333333
Q ss_pred ceeechhhhhhcccccCCCCCHHHHHHHHHHHHHh
Q 029455 146 ARVSLENIAVKLGHKDVSSLTPVTIAIEALEQIEG 180 (193)
Q Consensus 146 ~~i~~~~~~~~~~~iDt~~~~~~~~~~~i~~~~~~ 180 (193)
+|++..-.++...|| .+.+++++..++...+..
T Consensus 161 -vi~~~e~kg~l~~i~-a~~~~d~Vf~~v~~~id~ 193 (195)
T KOG3079|consen 161 -VIEYYEKKGKLLKIN-AERSVDDVFEEVVTAIDA 193 (195)
T ss_pred -HHHHHHccCcEEEec-CCCCHHHHHHHHHHHhhc
Confidence 222222222333577 479999999999988764
No 41
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=99.46 E-value=8.6e-14 Score=122.45 Aligned_cols=149 Identities=19% Similarity=0.156 Sum_probs=91.1
Q ss_pred CCCCchHHHHHHHHHhcCC------cEeechHHHHHHhCCCCHHHHHHHhcchhhHHHHHHHHHHHhccCCcEEEeCCce
Q 029455 1 MMGSGKTTVGKILSGVLGY------SFFDCDTLIEQSVDGTSVAEIFKLYGEGFFREKETEVLQKLSLMRQLVVSTGGGA 74 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~------~~~d~d~~~~~~~~g~~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~vi~~g~~~ 74 (193)
+|||||||+|+.|++.|+. .++|.|.+...+. |.. .+........++.+. .....+...+..+|... ..
T Consensus 400 l~GSGKSTia~~La~~L~~~~g~~~~~lD~D~vr~~l~-ge~--~f~~~er~~~~~~l~-~~a~~v~~~Gg~vI~~~-~~ 474 (568)
T PRK05537 400 LSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVVRKHLS-SEL--GFSKEDRDLNILRIG-FVASEITKNGGIAICAP-IA 474 (568)
T ss_pred CCCChHHHHHHHHHHHhhhccCceEEEeCCcHHHHhcc-CCC--CCCHHHHHHHHHHHH-HHHHHHHhCCCEEEEEe-CC
Confidence 6999999999999999996 8999998755443 211 000011111222211 11122333344444321 11
Q ss_pred ee---CHhhHHhccC-C--eEEEEECCHHHHHHHHhccCCCCCCccccCCCCChhHHHHHHHHHHHHHHHHHHh-h-ccc
Q 029455 75 VT---RPINWRYMQK-G--ISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYA-N-ANA 146 (193)
Q Consensus 75 v~---~~~~~~~l~~-~--~vV~L~~~~~~~~~Rl~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~r~~~y~-~-~~~ 146 (193)
+. ...++..++. . ++|||++|.+++.+|+. |++.... ....+..++..|.+.|. . ++.
T Consensus 475 p~~~~R~~nr~llk~~g~fivV~L~~p~e~l~~R~r------r~Ll~~~--------~~~~i~~l~~~R~~yy~p~~Adl 540 (568)
T PRK05537 475 PYRATRREVREMIEAYGGFIEVHVATPLEVCEQRDR------KGLYAKA--------REGKIKGFTGISDPYEPPANPEL 540 (568)
T ss_pred chHHHHHHHHHHHhhcCCEEEEEEcCCHHHHHHhcc------ccccccc--------hhchhhccccccccccCCCCCcE
Confidence 11 1345555553 3 58999999999999974 3444320 12446666777888775 3 666
Q ss_pred eeechhhhhhcccccCCCCCHHHHHHHHHHHHHh
Q 029455 147 RVSLENIAVKLGHKDVSSLTPVTIAIEALEQIEG 180 (193)
Q Consensus 147 ~i~~~~~~~~~~~iDt~~~~~~~~~~~i~~~~~~ 180 (193)
+| ||+..++++++++|++.+..
T Consensus 541 ~I------------Dt~~~s~~eiv~~Il~~L~~ 562 (568)
T PRK05537 541 VI------------DTTNVTPDECAHKILLYLEE 562 (568)
T ss_pred EE------------ECCCCCHHHHHHHHHHHHHH
Confidence 64 88889999999999998864
No 42
>PRK00023 cmk cytidylate kinase; Provisional
Probab=99.46 E-value=3.2e-12 Score=100.61 Aligned_cols=162 Identities=20% Similarity=0.221 Sum_probs=88.0
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHHHHHh-----CCCCHHHH--HHH----hcc-----------------------
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQSV-----DGTSVAEI--FKL----YGE----------------------- 46 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~~~~~-----~g~~~~~~--~~~----~~~----------------------- 46 (193)
+|||||||+|+.||++||+++++.+.+++... .|.++.+. ..+ ...
T Consensus 12 ~~gsGksti~~~la~~~~~~~~~~~~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~lr 91 (225)
T PRK00023 12 PAGSGKGTVAKILAKKLGFHYLDTGAMYRAVALAALRHGVDLEDEEALVALAAHLDISFESDPGGQRVFLNGEDVTDEIR 91 (225)
T ss_pred CCCCCHHHHHHHHHHHhCCCcccCchhHHHHHHHHHHcCCCCCCHHHHHHHHhcCCeEEecCCCcceEEECCcchHHhhC
Confidence 68999999999999999999999999876532 24432221 111 000
Q ss_pred -----------hhhHHHHHH---HHHHHhccCCcEEEeCC-ceeeCHhhHHhcc-CCeEEEEECCHHHHHHHHhccCCCC
Q 029455 47 -----------GFFREKETE---VLQKLSLMRQLVVSTGG-GAVTRPINWRYMQ-KGISVWLDVPLEALAQRIAAVGTDS 110 (193)
Q Consensus 47 -----------~~~~~~e~~---~~~~l~~~~~~vi~~g~-~~v~~~~~~~~l~-~~~vV~L~~~~~~~~~Rl~~~~~~~ 110 (193)
..+..+... ....+...+++|+.... +.+ .++ .++.|||+||.+++.+|..++. ..
T Consensus 92 ~~~i~~~~s~~a~~~~ir~~l~~~q~~ia~~~~~Vi~GR~~~~~-------vl~~a~~~ifl~a~~e~R~~Rr~~~~-~~ 163 (225)
T PRK00023 92 TEEVGNAASKVAAIPEVREALVERQRAFAREPGLVMDGRDIGTV-------VFPDAELKIFLTASAEERAERRYKEL-QA 163 (225)
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHhhCCCEEEEecChheE-------EeCCCCEEEEEECCHHHHHHHHHHHH-Hh
Confidence 000011111 11223344566665221 111 222 2689999999999877765421 11
Q ss_pred CCccccCCCCChhHHHHHHHHHHHHHHHHHHhhccceeechhhhhhcccccCCCCCHHHHHHHHHHHHHhhh
Q 029455 111 RPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVSLENIAVKLGHKDVSSLTPVTIAIEALEQIEGFL 182 (193)
Q Consensus 111 R~~~~~~~~~~~~~~~~~~~~~~~~~r~~~y~~~~~~i~~~~~~~~~~~iDt~~~~~~~~~~~i~~~~~~~~ 182 (193)
++. +..++++++.+.+.-..+. .+...+... ..+ .++|||+.++++++++.|.+.+++.+
T Consensus 164 ~g~------~~~~~~~~~~i~~rD~~~~-~r~~~~l~~----~~d-~l~IDTs~l~~ee~v~~I~~~i~~~~ 223 (225)
T PRK00023 164 KGI------SVDFEDLLAEIKERDERDS-NRAVAPLKP----AED-ALLLDTSGLSIEEVVEKILALVEEKL 223 (225)
T ss_pred cCC------CCCHHHHHHHHHHHHHhhh-hcccccccc----cCC-EEEEECCCCCHHHHHHHHHHHHHHHh
Confidence 111 1112234444433322111 111112111 111 25789999999999999999997654
No 43
>PRK13975 thymidylate kinase; Provisional
Probab=99.45 E-value=5.7e-13 Score=102.27 Aligned_cols=155 Identities=22% Similarity=0.263 Sum_probs=84.6
Q ss_pred CCCCchHHHHHHHHHhcCC--cEeechHHH----HHHhCC-----CCHHHHHHHhcchhhHHHHHHHHHHHhccCCcEEE
Q 029455 1 MMGSGKTTVGKILSGVLGY--SFFDCDTLI----EQSVDG-----TSVAEIFKLYGEGFFREKETEVLQKLSLMRQLVVS 69 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~--~~~d~d~~~----~~~~~g-----~~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~vi~ 69 (193)
++||||||+++.|+++|+. .+.+.|..+ ++...+ .++..++...+...++.++ ..+. . ..||.
T Consensus 10 ~~GsGKtT~~~~L~~~l~~~~~~~~~~~~~g~~ir~~~~~~~~~~~~~~~~f~~~r~~~~~~i~----~~~~-~-~~vi~ 83 (196)
T PRK13975 10 IDGSGKTTQAKLLAEKLNAFWTCEPTDGKIGKLIREILSGSKCDKETLALLFAADRVEHVKEIE----EDLK-K-RDVVC 83 (196)
T ss_pred CCCCCHHHHHHHHHHHhCCCeeECCCCChHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHH----HHHc-C-CEEEE
Confidence 6899999999999999994 444554333 222211 1122233333333333221 1122 2 33444
Q ss_pred eC-----------CceeeC---HhhHHhccCCeEEEEECCHHHHHHHHhccCCCCCCccccCCCCChhHHHHHHHHHHHH
Q 029455 70 TG-----------GGAVTR---PINWRYMQKGISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWE 135 (193)
Q Consensus 70 ~g-----------~~~v~~---~~~~~~l~~~~vV~L~~~~~~~~~Rl~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~ 135 (193)
.. .|.... ..+...+.++++|||++|++++.+|+..| .|+.... . +..+++.+.|.
T Consensus 84 DRy~~S~~a~~~~~g~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~Rl~~r---~~~~~~~---~----~~~~~~~~~y~ 153 (196)
T PRK13975 84 DRYVYSSIAYQSVQGIDEDFIYSINRYAKKPDLVFLLDVDIEEALKRMETR---DKEIFEK---K----EFLKKVQEKYL 153 (196)
T ss_pred ECchhHHHHHhcccCCCHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHhcc---Cccccch---H----HHHHHHHHHHH
Confidence 32 111100 00111123479999999999999999874 2443322 1 22445555555
Q ss_pred HHHHH--H-hhccceeechhhhhhcccccCCCCCHHHHHHHHHHHHHhhh
Q 029455 136 ERGEA--Y-ANANARVSLENIAVKLGHKDVSSLTPVTIAIEALEQIEGFL 182 (193)
Q Consensus 136 ~r~~~--y-~~~~~~i~~~~~~~~~~~iDt~~~~~~~~~~~i~~~~~~~~ 182 (193)
++... | .....+ +||+++.+++++++.|.+.+...+
T Consensus 154 ~~~~~~~~~~~~~~~-----------~Id~~~~~~eev~~~I~~~i~~~~ 192 (196)
T PRK13975 154 ELANNEKFMPKYGFI-----------VIDTTNKSIEEVFNEILNKIKDKI 192 (196)
T ss_pred HHHhhcccCCcCCEE-----------EEECCCCCHHHHHHHHHHHHHHhC
Confidence 54431 1 111222 379888999999999999887544
No 44
>PRK00279 adk adenylate kinase; Reviewed
Probab=99.45 E-value=7.1e-12 Score=97.88 Aligned_cols=102 Identities=19% Similarity=0.265 Sum_probs=62.8
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHHHHHhC-C----CCHHHHHHHhcchhhHHHHHHHHH-HHhc---cCCcEEEeC
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVD-G----TSVAEIFKLYGEGFFREKETEVLQ-KLSL---MRQLVVSTG 71 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~~~~~~-g----~~~~~~~~~~~~~~~~~~e~~~~~-~l~~---~~~~vi~~g 71 (193)
+|||||||+|+.||+++|++++++++++++... + ..+.+++. .|......+...++. .+.. ...+||+ |
T Consensus 8 ~pGsGKsT~a~~la~~~~~~~is~~dl~r~~~~~~~~~~~~~~~~~~-~g~~~p~~~~~~~i~~~l~~~~~~~g~VlD-G 85 (215)
T PRK00279 8 PPGAGKGTQAKFIAEKYGIPHISTGDMLRAAVKAGTELGKEAKSYMD-AGELVPDEIVIGLVKERLAQPDCKNGFLLD-G 85 (215)
T ss_pred CCCCCHHHHHHHHHHHhCCcEEECCccHHHHHhccchHHHHHHHHHH-cCCcCCHHHHHHHHHHHHhccCccCCEEEe-c
Confidence 699999999999999999999999998876541 1 11223332 232222222233333 2322 1245554 4
Q ss_pred CceeeCHhhHHhc----c-----CCeEEEEECCHHHHHHHHhcc
Q 029455 72 GGAVTRPINWRYM----Q-----KGISVWLDVPLEALAQRIAAV 106 (193)
Q Consensus 72 ~~~v~~~~~~~~l----~-----~~~vV~L~~~~~~~~~Rl~~~ 106 (193)
++........+ . .+.+|+|+||.+++.+|+..|
T Consensus 86 --fPr~~~qa~~l~~~l~~~~~~~~~vi~l~~~~~~~~~Rl~~R 127 (215)
T PRK00279 86 --FPRTIPQAEALDEMLKELGIKLDAVIEIDVPDEELVERLSGR 127 (215)
T ss_pred --CCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHhCC
Confidence 33333222222 1 258999999999999999875
No 45
>PRK14528 adenylate kinase; Provisional
Probab=99.44 E-value=1.6e-11 Score=93.89 Aligned_cols=158 Identities=15% Similarity=0.156 Sum_probs=85.6
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHHHHHh-CCCC----HHHHHHHhcchhhHHHHHHHH-HHHhc---cCCcEEEeC
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQSV-DGTS----VAEIFKLYGEGFFREKETEVL-QKLSL---MRQLVVSTG 71 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~~~~~-~g~~----~~~~~~~~~~~~~~~~e~~~~-~~l~~---~~~~vi~~g 71 (193)
+|||||||+|+.|++.+|+++++++++++... .+.. +..++ ..|.......-..++ ..+.. ...+||. |
T Consensus 9 ~pGsGKtt~a~~la~~~~~~~is~~~~lr~~~~~~~~~g~~~~~~~-~~g~lvp~~~~~~~~~~~l~~~~~~~g~viD-G 86 (186)
T PRK14528 9 PPGAGKGTQAKILCERLSIPQISTGDILREAVKNQTAMGIEAKRYM-DAGDLVPDSVVIGIIKDRIREADCKNGFLLD-G 86 (186)
T ss_pred CCCCCHHHHHHHHHHHhCCCeeeCCHHHHHHhhcCCHHHHHHHHHH-hCCCccCHHHHHHHHHHHHhCcCccCcEEEe-C
Confidence 69999999999999999999999999987754 1222 12222 222221111111112 22222 2234554 4
Q ss_pred CceeeCHhh---HH-hcc-----CCeEEEEECCHHHHHHHHhccCC-CCCCccccCCCCChhHHHHHHHHHHHHHHHHHH
Q 029455 72 GGAVTRPIN---WR-YMQ-----KGISVWLDVPLEALAQRIAAVGT-DSRPLLHQCESGDAYTEALNRLSTLWEERGEAY 141 (193)
Q Consensus 72 ~~~v~~~~~---~~-~l~-----~~~vV~L~~~~~~~~~Rl~~~~~-~~R~~~~~~~~~~~~~~~~~~~~~~~~~r~~~y 141 (193)
++...+. +. .+. .+.+|+|+||++++.+|+..|.. ..|+ +|+.+...+++........|..
T Consensus 87 --~Pr~~~qa~~l~~~~~~~~~~~d~vI~Ld~~~~~~~~Rl~~R~~~~gr~-------dd~~e~i~~Rl~~y~~~~~pv~ 157 (186)
T PRK14528 87 --FPRTVEQADALDALLKNEGKSIDKAINLEVPDGELLKRLLGRAEIEGRA-------DDNEATIKNRLDNYNKKTLPLL 157 (186)
T ss_pred --CCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCccccCCC-------CCCHHHHHHHHHHHHHHhHHHH
Confidence 3332221 11 121 37999999999999999997521 1121 2322233333433333333322
Q ss_pred hhccceeechhhhhhcccccCCCCCHHHHHHHHHHH
Q 029455 142 ANANARVSLENIAVKLGHKDVSSLTPVTIAIEALEQ 177 (193)
Q Consensus 142 ~~~~~~i~~~~~~~~~~~iDt~~~~~~~~~~~i~~~ 177 (193)
+ ++..-++...||. ..+++++...|...
T Consensus 158 ~-------~y~~~~~~~~i~~-~~~~~~v~~~~~~~ 185 (186)
T PRK14528 158 D-------FYAAQKKLSQVNG-VGSLEEVTSLIQKE 185 (186)
T ss_pred H-------HHHhCCCEEEEEC-CCCHHHHHHHHHHh
Confidence 2 2222222335784 68899999887653
No 46
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=99.44 E-value=5.2e-12 Score=97.70 Aligned_cols=153 Identities=17% Similarity=0.201 Sum_probs=88.5
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHHHHHhCC-CCHHHHHHHhcchhh---------------H------HHH-----
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDG-TSVAEIFKLYGEGFF---------------R------EKE----- 53 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~~~~~~g-~~~~~~~~~~~~~~~---------------~------~~e----- 53 (193)
++||||||+++.|++.+|++++|+|.+.++.+.. ....++...+|...+ . .++
T Consensus 14 ~iGsGKStv~~~l~~~lg~~vidaD~i~~~l~~~~~~~~~i~~~fG~~i~~~g~idR~~L~~~vF~d~~~~~~Le~i~HP 93 (204)
T PRK14733 14 GIASGKSTATRILKEKLNLNVVCADTISREITKKPSVIKKIAEKFGDEIVMNKQINRAMLRAIITESKEAKKWLEDYLHP 93 (204)
T ss_pred CCCCCHHHHHHHHHHHcCCeEEeccHHHHHHHCchHHHHHHHHHhCHHhccCCCcCHHHHHHHHhCCHHHHHHHHhhhhH
Confidence 4899999999999988999999999999887622 123445555554332 0 000
Q ss_pred ---HHHHHHHhcc-CCcEEEeCCceeeC-HhhHHhccC-CeEEEEECCHHHHHHHHhccCCCCCCccccCCCCChhHHHH
Q 029455 54 ---TEVLQKLSLM-RQLVVSTGGGAVTR-PINWRYMQK-GISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEAL 127 (193)
Q Consensus 54 ---~~~~~~l~~~-~~~vi~~g~~~v~~-~~~~~~l~~-~~vV~L~~~~~~~~~Rl~~~~~~~R~~~~~~~~~~~~~~~~ 127 (193)
..+.+.+... ...++... ++. +..+..... +.+|+++||.+++++|+.+| ++. +. . ++.
T Consensus 94 ~V~~~~~~~~~~~~~~~vv~ei---pLL~E~~~~~~~~~D~vi~V~a~~e~ri~Rl~~R----d~~-s~---~----~a~ 158 (204)
T PRK14733 94 VINKEIKKQVKESDTVMTIVDI---PLLGPYNFRHYDYLKKVIVIKADLETRIRRLMER----DGK-NR---Q----QAV 158 (204)
T ss_pred HHHHHHHHHHHhcCCCeEEEEe---chhhhccCchhhhCCEEEEEECCHHHHHHHHHHc----CCC-CH---H----HHH
Confidence 0111111111 12233221 222 111100111 68999999999999999973 222 21 1 234
Q ss_pred HHHHHHHHHHHHHHhhccceeechhhhhhcccccCCCCCHHHHHHHHHHHHHhh
Q 029455 128 NRLSTLWEERGEAYANANARVSLENIAVKLGHKDVSSLTPVTIAIEALEQIEGF 181 (193)
Q Consensus 128 ~~~~~~~~~r~~~y~~~~~~i~~~~~~~~~~~iDt~~~~~~~~~~~i~~~~~~~ 181 (193)
..+..++. .....+.+|.+| |+++.+.+++...+.+.+++.
T Consensus 159 ~ri~~Q~~-~eek~~~aD~VI------------~N~g~~~~~l~~~~~~~~~~~ 199 (204)
T PRK14733 159 AFINLQIS-DKEREKIADFVI------------DNTELTDQELESKLITTINEI 199 (204)
T ss_pred HHHHhCCC-HHHHHHhCCEEE------------ECcCCCHHHHHHHHHHHHHHH
Confidence 44443332 222333488887 566558999988888877665
No 47
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=99.44 E-value=3.1e-12 Score=95.86 Aligned_cols=149 Identities=15% Similarity=0.170 Sum_probs=82.2
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHHH-----HHhCCCCHHHHHHHhcchhhHHHHHHHHHHHhccCCcEEEeCCcee
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIE-----QSVDGTSVAEIFKLYGEGFFREKETEVLQKLSLMRQLVVSTGGGAV 75 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~~-----~~~~g~~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~vi~~g~~~v 75 (193)
+|||||||+++.|++.+|..+++.|.+.. ....|....+ .....+...+...+.......+..||.+. .
T Consensus 3 ~sGsGKSTla~~la~~l~~~~~~~d~~~~~~~~~~~~~g~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~viv~s---~ 76 (163)
T PRK11545 3 VSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLND---DDRKPWLQALNDAAFAMQRTNKVSLIVCS---A 76 (163)
T ss_pred CCCCcHHHHHHHHHHHhCCeEEeCccCCchhhhccccCCCCCCh---hhHHHHHHHHHHHHHHHHHcCCceEEEEe---c
Confidence 69999999999999999999999997531 1111433222 11112222222222222222333344432 2
Q ss_pred eCHhhHHhcc----CCeEEEEECCHHHHHHHHhccCCCCCCccccCCCCChhHHHHHHHHHHHHHHHHHHhhccceeech
Q 029455 76 TRPINWRYMQ----KGISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVSLE 151 (193)
Q Consensus 76 ~~~~~~~~l~----~~~vV~L~~~~~~~~~Rl~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~r~~~y~~~~~~i~~~ 151 (193)
+....++.++ +..+|||+||++++.+|+..|. ... .. .+-+...+....+.-.....+
T Consensus 77 ~~~~~r~~~~~~~~~~~~v~l~a~~~~l~~Rl~~R~---~~~-a~----------~~vl~~Q~~~~ep~~~~e~~~---- 138 (163)
T PRK11545 77 LKKHYRDLLREGNPNLSFIYLKGDFDVIESRLKARK---GHF-FK----------TQMLVTQFETLQEPGADETDV---- 138 (163)
T ss_pred chHHHHHHHHccCCCEEEEEEECCHHHHHHHHHhcc---CCC-CC----------HHHHHHHHHHcCCCCCCCCCE----
Confidence 2333333333 1478999999999999999852 111 11 233333332211111110112
Q ss_pred hhhhhcccccCCCCCHHHHHHHHHHHHHh
Q 029455 152 NIAVKLGHKDVSSLTPVTIAIEALEQIEG 180 (193)
Q Consensus 152 ~~~~~~~~iDt~~~~~~~~~~~i~~~~~~ 180 (193)
++|||+ .+++++++.+..++.+
T Consensus 139 ------~~id~~-~~~~~~~~~~~~~~~~ 160 (163)
T PRK11545 139 ------LVVDID-QPLEGVVASTIEVIKK 160 (163)
T ss_pred ------EEEeCC-CCHHHHHHHHHHHHHH
Confidence 247875 6899999999998865
No 48
>PRK02496 adk adenylate kinase; Provisional
Probab=99.43 E-value=2.3e-11 Score=92.67 Aligned_cols=102 Identities=20% Similarity=0.232 Sum_probs=61.4
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHHHHHhC-CCC----HHHHHHHhcchhhHHHHHHHHHH-Hhc---cCCcEEEeC
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVD-GTS----VAEIFKLYGEGFFREKETEVLQK-LSL---MRQLVVSTG 71 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~~~~~~-g~~----~~~~~~~~~~~~~~~~e~~~~~~-l~~---~~~~vi~~g 71 (193)
+|||||||+|+.|++.+|+++++.+++++.... +.. +..++ ..|.....++...++.. +.. ...+|+ .|
T Consensus 9 ~pGsGKst~a~~la~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~-~~g~~~~~~~~~~~l~~~l~~~~~~~g~vl-dG 86 (184)
T PRK02496 9 PPGAGKGTQAVVLAEHLHIPHISTGDILRQAIKEQTPLGIKAQGYM-DKGELVPDQLVLDLVQERLQQPDAANGWIL-DG 86 (184)
T ss_pred CCCCCHHHHHHHHHHHhCCcEEEhHHHHHHHHhccChhHHHHHHHH-HCCCccCHHHHHHHHHHHHhCcCccCCEEE-eC
Confidence 699999999999999999999999998876541 211 12222 12322222332233332 221 123444 44
Q ss_pred CceeeCHhh---HH-hc---c--CCeEEEEECCHHHHHHHHhcc
Q 029455 72 GGAVTRPIN---WR-YM---Q--KGISVWLDVPLEALAQRIAAV 106 (193)
Q Consensus 72 ~~~v~~~~~---~~-~l---~--~~~vV~L~~~~~~~~~Rl~~~ 106 (193)
++..... +. .+ . .+.+|+|++|.+++.+|+..|
T Consensus 87 --fPr~~~q~~~l~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R 128 (184)
T PRK02496 87 --FPRKVTQAAFLDELLQEIGQSGERVVNLDVPDDVVVERLLAR 128 (184)
T ss_pred --CCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhcC
Confidence 2222211 11 11 1 378999999999999999874
No 49
>PRK06217 hypothetical protein; Validated
Probab=99.42 E-value=7.5e-12 Score=95.38 Aligned_cols=96 Identities=22% Similarity=0.182 Sum_probs=61.3
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHHHHHhCCCCHHHHHHHhcchhhHHHHHHHHHHHhccCCcEEEeCCceeeCHhh
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFREKETEVLQKLSLMRQLVVSTGGGAVTRPIN 80 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~~~~~~g~~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~vi~~g~~~v~~~~~ 80 (193)
+|||||||+|+.|++.+|++++++|.+++... +.+.. ..+....+ ...++..+....++||. |.. ... .
T Consensus 9 ~~GsGKSTla~~L~~~l~~~~~~~D~~~~~~~-~~~~~----~~~~~~~~--~~~~~~~~~~~~~~vi~-G~~--~~~-~ 77 (183)
T PRK06217 9 ASGSGTTTLGAALAERLDIPHLDTDDYFWLPT-DPPFT----TKRPPEER--LRLLLEDLRPREGWVLS-GSA--LGW-G 77 (183)
T ss_pred CCCCCHHHHHHHHHHHcCCcEEEcCceeeccC-CCCcc----ccCCHHHH--HHHHHHHHhcCCCEEEE-ccH--HHH-H
Confidence 58999999999999999999999999887543 32210 11111111 22334444444566665 431 111 1
Q ss_pred HHhcc-CCeEEEEECCHHHHHHHHhccC
Q 029455 81 WRYMQ-KGISVWLDVPLEALAQRIAAVG 107 (193)
Q Consensus 81 ~~~l~-~~~vV~L~~~~~~~~~Rl~~~~ 107 (193)
..... .+.+|||++|.+++.+|+..|.
T Consensus 78 ~~~~~~~d~~i~Ld~~~~~~~~Rl~~R~ 105 (183)
T PRK06217 78 DPLEPLFDLVVFLTIPPELRLERLRLRE 105 (183)
T ss_pred HHHHhhCCEEEEEECCHHHHHHHHHcCc
Confidence 11222 3789999999999999999763
No 50
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=99.42 E-value=1.7e-12 Score=94.79 Aligned_cols=95 Identities=26% Similarity=0.367 Sum_probs=57.3
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHHHHHhCCCCHHHHHHHhcchhhHHHHHHHHHHHhccCCcEEEeCC-ceeeCHh
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFREKETEVLQKLSLMRQLVVSTGG-GAVTRPI 79 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~~~~~~g~~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~vi~~g~-~~v~~~~ 79 (193)
+|||||||+|+.|++++|+++++.|.+..... +...... .....+.....+.+..+...+.+|+.... ++.+
T Consensus 7 ~~GsGKst~a~~la~~~~~~~~~~~~i~~e~~-~~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~Vidg~~~~~~~--- 79 (147)
T cd02020 7 PAGSGKSTVAKLLAKKLGLPYLDTGGIRTEEV-GKLASEV---AAIPEVRKALDERQRELAKKPGIVLEGRDIGTVV--- 79 (147)
T ss_pred CCCCCHHHHHHHHHHHhCCceeccccCCHHHH-HHHHHHh---cccHhHHHHHHHHHHHHhhCCCEEEEeeeeeeEE---
Confidence 69999999999999999999999996543322 1000000 00011222222334445444556664221 1221
Q ss_pred hHHhcc-CCeEEEEECCHHHHHHHHhcc
Q 029455 80 NWRYMQ-KGISVWLDVPLEALAQRIAAV 106 (193)
Q Consensus 80 ~~~~l~-~~~vV~L~~~~~~~~~Rl~~~ 106 (193)
+. .+.+|||++|++.+.+|+.+|
T Consensus 80 ----~~~~~~~i~l~~~~~~r~~R~~~r 103 (147)
T cd02020 80 ----FPDADLKIFLTASPEVRAKRRAKQ 103 (147)
T ss_pred ----cCCCCEEEEEECCHHHHHHHHHHH
Confidence 12 268999999999999999873
No 51
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=99.41 E-value=5.7e-12 Score=98.58 Aligned_cols=31 Identities=32% Similarity=0.613 Sum_probs=28.2
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHHHHH
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQS 31 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~~~~ 31 (193)
|+||||||+++.|++++|+++++.+.+++..
T Consensus 10 ~~GsGKst~~~~la~~~~~~~~~~g~~~r~~ 40 (217)
T TIGR00017 10 PSGAGKSTVAKAVAEKLGYAYLDSGAMYRAI 40 (217)
T ss_pred CCCCCHHHHHHHHHHHhCCceeeCchHHHHH
Confidence 6899999999999999999999999887543
No 52
>PRK14527 adenylate kinase; Provisional
Probab=99.41 E-value=3.9e-11 Score=92.02 Aligned_cols=157 Identities=20% Similarity=0.213 Sum_probs=83.3
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHHHHHhC-CCCHHHHHH---HhcchhhHHHHHHHHHH-Hhc--cCCcEEEeCCc
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVD-GTSVAEIFK---LYGEGFFREKETEVLQK-LSL--MRQLVVSTGGG 73 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~~~~~~-g~~~~~~~~---~~~~~~~~~~e~~~~~~-l~~--~~~~vi~~g~~ 73 (193)
+|||||||+|+.|++++|+.+++.+++++.... +.++..... ..|.....+.-..++.. +.. ...+|+ .|
T Consensus 14 ~pGsGKsT~a~~La~~~~~~~is~gd~~r~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~l~~~~l~~~~~~~~Vl-DG-- 90 (191)
T PRK14527 14 PPGAGKGTQAERLAQELGLKKLSTGDILRDHVARGTELGQRAKPIMEAGDLVPDELILALIRDELAGMEPVRVIF-DG-- 90 (191)
T ss_pred CCCCCHHHHHHHHHHHhCCCCCCccHHHHHHHhcCcHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCCCcEEE-cC--
Confidence 699999999999999999999999998876541 222221111 11221111211222222 322 123444 34
Q ss_pred eeeCHhhHH----hcc----C-CeEEEEECCHHHHHHHHhccCC-CCCCccccCCCCChhHHHHHHHHHHHHHHHH---H
Q 029455 74 AVTRPINWR----YMQ----K-GISVWLDVPLEALAQRIAAVGT-DSRPLLHQCESGDAYTEALNRLSTLWEERGE---A 140 (193)
Q Consensus 74 ~v~~~~~~~----~l~----~-~~vV~L~~~~~~~~~Rl~~~~~-~~R~~~~~~~~~~~~~~~~~~~~~~~~~r~~---~ 140 (193)
++....... .+. . ..+|||+||.+++.+|+.+|.. ..|. ++..+...+++........+ .
T Consensus 91 fpr~~~q~~~~~~~~~~~g~~~~~vi~l~~~~~~~~~Rl~~R~~~~~r~-------dd~~~~~~~R~~~y~~~~~~v~~~ 163 (191)
T PRK14527 91 FPRTLAQAEALDRLLEELGARLLAVVLLEVPDEELIRRIVERARQEGRS-------DDNEETVRRRQQVYREQTQPLVDY 163 (191)
T ss_pred CCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcCcccCCCC-------CCCHHHHHHHHHHHHHHhHHHHHH
Confidence 333222121 111 1 4789999999999999997531 1121 22111122222222222222 2
Q ss_pred HhhccceeechhhhhhcccccCCCCCHHHHHHHHHHHH
Q 029455 141 YANANARVSLENIAVKLGHKDVSSLTPVTIAIEALEQI 178 (193)
Q Consensus 141 y~~~~~~i~~~~~~~~~~~iDt~~~~~~~~~~~i~~~~ 178 (193)
|+.-+.++ .||. ..+++++.+.|...+
T Consensus 164 y~~~~~~~----------~id~-~~~~~~v~~~i~~~l 190 (191)
T PRK14527 164 YEARGHLK----------RVDG-LGTPDEVYARILKAL 190 (191)
T ss_pred HHhcCCEE----------EEEC-CCCHHHHHHHHHHhh
Confidence 32212222 4784 689999999988765
No 53
>PRK14526 adenylate kinase; Provisional
Probab=99.40 E-value=3.7e-11 Score=93.61 Aligned_cols=102 Identities=20% Similarity=0.271 Sum_probs=63.1
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHHHHHhC-----CCCHHHHHHHhcchhhHHHHHHHHH-HHhc---cCCcEEEeC
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVD-----GTSVAEIFKLYGEGFFREKETEVLQ-KLSL---MRQLVVSTG 71 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~~~~~~-----g~~~~~~~~~~~~~~~~~~e~~~~~-~l~~---~~~~vi~~g 71 (193)
+|||||||+++.|++.+|++++++++++++... |..+.+++. .|......+...++. .+.. ...+|+ .|
T Consensus 8 ~pGsGKsT~a~~La~~~~~~~is~G~llr~~~~~~t~~g~~i~~~~~-~g~lvpd~~~~~lv~~~l~~~~~~~g~il-DG 85 (211)
T PRK14526 8 PPGSGKGTIAKILSNELNYYHISTGDLFRENILNSTPLGKEIKQIVE-NGQLVPDSITIKIVEDKINTIKNNDNFIL-DG 85 (211)
T ss_pred CCCCCHHHHHHHHHHHhCCceeecChHHHHhcccCChhhHHHHHHHH-cCccCChHHHHHHHHHHHhcccccCcEEE-EC
Confidence 699999999999999999999999999876541 223444443 233222222222222 2222 234555 34
Q ss_pred CceeeCHhhHHhcc----CCeEEEEECCHHHHHHHHhcc
Q 029455 72 GGAVTRPINWRYMQ----KGISVWLDVPLEALAQRIAAV 106 (193)
Q Consensus 72 ~~~v~~~~~~~~l~----~~~vV~L~~~~~~~~~Rl~~~ 106 (193)
++........|. ...+|+|.+|.+++.+|+..|
T Consensus 86 --fPR~~~Qa~~l~~~~~~~~vi~l~~~~~~~~~Rl~~R 122 (211)
T PRK14526 86 --FPRNINQAKALDKFLPNIKIINFLIDEELLIKRLSGR 122 (211)
T ss_pred --CCCCHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHCC
Confidence 443333222332 246788999999999999875
No 54
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=99.40 E-value=1.3e-11 Score=94.97 Aligned_cols=31 Identities=35% Similarity=0.627 Sum_probs=28.6
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHHHHHh
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQSV 32 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~~~~~ 32 (193)
++||||||+++.|++ +|++++|+|.+.++.+
T Consensus 10 ~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~ 40 (194)
T PRK00081 10 GIGSGKSTVANLFAE-LGAPVIDADAIAHEVV 40 (194)
T ss_pred CCCCCHHHHHHHHHH-cCCEEEEecHHHHHHh
Confidence 589999999999988 9999999999988775
No 55
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=99.39 E-value=2e-11 Score=94.42 Aligned_cols=153 Identities=22% Similarity=0.294 Sum_probs=84.2
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHHHHHh-CC-CCHHHHHHHhcchh----------------hH------HHH---
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQSV-DG-TSVAEIFKLYGEGF----------------FR------EKE--- 53 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~~~~~-~g-~~~~~~~~~~~~~~----------------~~------~~e--- 53 (193)
.+||||||+++.|++ +|++++|+|.+.++.+ +| ....++...+|... |. .++
T Consensus 9 ~igsGKst~~~~l~~-~g~~vid~D~i~~~~~~~~~~~~~~l~~~fg~~~~~~~g~idR~~L~~~vF~~~~~~~~le~i~ 87 (200)
T PRK14734 9 GIGSGKSTVADLLSS-EGFLIVDADQVARDIVEPGQPALAELAEAFGDDILNPDGTLDRAGLAAKAFASPEQTALLNAIT 87 (200)
T ss_pred CCCCCHHHHHHHHHH-CCCeEEeCcHHHHHHHhcCCHHHHHHHHHhCccccCCCChhhHHHHHHHHhCCHHHHHHHHHhh
Confidence 489999999999987 8999999999887765 12 22344444444321 11 000
Q ss_pred -----HHHHHHH---hccC-CcEEEeCCceeeCHhhHHhccCCeEEEEECCHHHHHHHHhccCCCCCCccccCCCCChhH
Q 029455 54 -----TEVLQKL---SLMR-QLVVSTGGGAVTRPINWRYMQKGISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYT 124 (193)
Q Consensus 54 -----~~~~~~l---~~~~-~~vi~~g~~~v~~~~~~~~l~~~~vV~L~~~~~~~~~Rl~~~~~~~R~~~~~~~~~~~~~ 124 (193)
..+.+.+ ...+ ..++...+ . +....+.. .-+.+|||+||++++++|+.+| |+. .. .
T Consensus 88 hP~v~~~~~~~~~~~~~~~~~~vv~e~p-l-L~e~g~~~-~~D~vi~V~a~~e~ri~Rl~~R----~g~-s~---e---- 152 (200)
T PRK14734 88 HPRIAEETARRFNEARAQGAKVAVYDMP-L-LVEKGLDR-KMDLVVVVDVDVEERVRRLVEK----RGL-DE---D---- 152 (200)
T ss_pred CHHHHHHHHHHHHHHHhcCCCEEEEEee-c-eeEcCccc-cCCeEEEEECCHHHHHHHHHHc----CCC-CH---H----
Confidence 0000011 1111 22332211 1 11111100 0168999999999999999874 232 11 1
Q ss_pred HHHHHHHHHHHHHHHHHhhccceeechhhhhhcccccCCCCCHHHHHHHHHHHHHhhhc
Q 029455 125 EALNRLSTLWEERGEAYANANARVSLENIAVKLGHKDVSSLTPVTIAIEALEQIEGFLK 183 (193)
Q Consensus 125 ~~~~~~~~~~~~r~~~y~~~~~~i~~~~~~~~~~~iDt~~~~~~~~~~~i~~~~~~~~~ 183 (193)
++...+...+.. ......+|.+| |+ ..+++++.+.+...++++++
T Consensus 153 ~~~~ri~~Q~~~-~~k~~~ad~vI------------~N-~g~~e~l~~~v~~~~~~~~~ 197 (200)
T PRK14734 153 DARRRIAAQIPD-DVRLKAADIVV------------DN-NGTREQLLAQVDGLIAEILS 197 (200)
T ss_pred HHHHHHHhcCCH-HHHHHhCCEEE------------EC-cCCHHHHHHHHHHHHHHHHh
Confidence 233344333221 11233478776 53 57899999999888877654
No 56
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=99.37 E-value=1.2e-11 Score=111.02 Aligned_cols=158 Identities=24% Similarity=0.251 Sum_probs=89.9
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHHHHHh-----CCCCHHH---HHH---Hh------------cc-----------
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQSV-----DGTSVAE---IFK---LY------------GE----------- 46 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~~~~~-----~g~~~~~---~~~---~~------------~~----------- 46 (193)
|+||||||+|+.||++||++|+|++.+++..+ .|..+.+ +.. .. ++
T Consensus 450 ~~~~gks~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v 529 (661)
T PRK11860 450 PTASGKGTVAARVAEALGYHYLDSGALYRLTALAALRAGVALDDEAAIAALARGLPVRFEGDRIWLGGEDVTDAIRTEAA 529 (661)
T ss_pred CCCCCHHHHHHHHHHHhCCeEecHHHhhhHHHHHHHHcCcCCCCHHHHHHHHhcCCeeecCCeEEECCeEchhhhCcHHH
Confidence 78999999999999999999999999988652 2433221 111 00 00
Q ss_pred ----------hhhHHHHHHHHHHHhccCCcEEEeCC--ceeeCHhhHHhccCCeEEEEECCHHHHHHHHhccCCCCCCcc
Q 029455 47 ----------GFFREKETEVLQKLSLMRQLVVSTGG--GAVTRPINWRYMQKGISVWLDVPLEALAQRIAAVGTDSRPLL 114 (193)
Q Consensus 47 ----------~~~~~~e~~~~~~l~~~~~~vi~~g~--~~v~~~~~~~~l~~~~vV~L~~~~~~~~~Rl~~~~~~~R~~~ 114 (193)
...|..-....+++....+ +|..|- |++..|. .++.|||+|+++++.+|..+.. ..++..
T Consensus 530 ~~~~s~~a~~~~vr~~l~~~qr~~~~~~~-~v~eGRdigtvv~p~------a~~kifl~a~~~~Ra~Rr~~~~-~~~~~~ 601 (661)
T PRK11860 530 GMGASRVSALPAVRAALLALQRSFRRLPG-LVADGRDMGTVIFPD------AALKVFLTASAEARAERRYKQL-ISKGIS 601 (661)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHhhCCC-EEEECCCCccEECCC------CCeEEEEECChhHHHHHHHHHH-HhCCCC
Confidence 0011111111222333334 455562 4454443 1689999999999999987521 012111
Q ss_pred ccCCCCChhHHHHHHHHHHHHHHHHHHh-h--ccceeechhhhhhcccccCCCCCHHHHHHHHHHHHHhh
Q 029455 115 HQCESGDAYTEALNRLSTLWEERGEAYA-N--ANARVSLENIAVKLGHKDVSSLTPVTIAIEALEQIEGF 181 (193)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~r~~~y~-~--~~~~i~~~~~~~~~~~iDt~~~~~~~~~~~i~~~~~~~ 181 (193)
..|++.++.+ .+|...-. + +.+.. +...++|||++++++++++.|++.+++.
T Consensus 602 ------~~~~~~~~~~----~~Rd~~d~~R~~~pl~~-----~~da~~idts~~~~~~v~~~i~~~i~~~ 656 (661)
T PRK11860 602 ------ANIADLLADL----EARDARDTQRSVAPLKP-----AQDALLLDNSDLTIEQAVAQVLDWWQER 656 (661)
T ss_pred ------CCHHHHHHHH----HHHhHHhhcCCCCCCcc-----CCCEEEEECCCCCHHHHHHHHHHHHHhh
Confidence 1132233333 33322111 1 22221 2233468999999999999999999753
No 57
>PRK04040 adenylate kinase; Provisional
Probab=99.36 E-value=1.1e-10 Score=89.51 Aligned_cols=114 Identities=17% Similarity=0.158 Sum_probs=65.1
Q ss_pred CCCCchHHHHHHHHHhc--CCcEeechHHHHHHh--CCC--CHHHHHHHhcchhhHHHHHHHH---HHHhccCCcEEEeC
Q 029455 1 MMGSGKTTVGKILSGVL--GYSFFDCDTLIEQSV--DGT--SVAEIFKLYGEGFFREKETEVL---QKLSLMRQLVVSTG 71 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l--g~~~~d~d~~~~~~~--~g~--~~~~~~~~~~~~~~~~~e~~~~---~~l~~~~~~vi~~g 71 (193)
+|||||||+++.|++++ ++.+++.++++...+ .|. +.+++. ........++...+. .++......|++++
T Consensus 10 ~pG~GKtt~~~~l~~~l~~~~~~~~~g~~~~~~a~~~g~~~~~d~~r-~l~~~~~~~~~~~a~~~i~~~~~~~~~~~~~h 88 (188)
T PRK04040 10 VPGVGKTTVLNKALEKLKEDYKIVNFGDVMLEVAKEEGLVEHRDEMR-KLPPEEQKELQREAAERIAEMAGEGPVIVDTH 88 (188)
T ss_pred CCCCCHHHHHHHHHHHhccCCeEEecchHHHHHHHHcCCCCCHHHHh-hCChhhhHHHHHHHHHHHHHhhcCCCEEEeee
Confidence 69999999999999999 899999999886654 232 122222 111111122222222 22222233555543
Q ss_pred C------ceee--CHhhHHhccCCeEEEEECCHHHHHHHHhccCCCCCCccc
Q 029455 72 G------GAVT--RPINWRYMQKGISVWLDVPLEALAQRIAAVGTDSRPLLH 115 (193)
Q Consensus 72 ~------~~v~--~~~~~~~l~~~~vV~L~~~~~~~~~Rl~~~~~~~R~~~~ 115 (193)
. |++. .......+.++.+|+|.+|++++++|..++..+.|+...
T Consensus 89 ~~i~~~~g~~~~~~~~~~~~l~pd~ii~l~a~p~~i~~Rrl~d~~R~R~~es 140 (188)
T PRK04040 89 ATIKTPAGYLPGLPEWVLEELNPDVIVLIEADPDEILMRRLRDETRRRDVET 140 (188)
T ss_pred eeeccCCCCcCCCCHHHHhhcCCCEEEEEeCCHHHHHHHHhcccccCCCCCC
Confidence 2 1111 111122333578999999999999998864334566543
No 58
>PRK08356 hypothetical protein; Provisional
Probab=99.36 E-value=2.5e-11 Score=93.39 Aligned_cols=152 Identities=13% Similarity=0.183 Sum_probs=82.3
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHHHHHhC--CC--------------CHHHHHHHhcchh---h-HHHH-HHHHHH
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVD--GT--------------SVAEIFKLYGEGF---F-REKE-TEVLQK 59 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~~~~~~--g~--------------~~~~~~~~~~~~~---~-~~~e-~~~~~~ 59 (193)
||||||||+|+.|++ +|+++++.++..+...+ +. ...+++ +.|... | .... ..++..
T Consensus 13 ~~gsGK~t~a~~l~~-~g~~~is~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~-e~g~~~~~~yG~~~~~~~~~~~ 90 (195)
T PRK08356 13 KIAAGKTTVAKFFEE-KGFCRVSCSDPLIDLLTHNVSDYSWVPEVPFKGEPTRENLI-ELGRYLKEKYGEDILIRLAVDK 90 (195)
T ss_pred CCCCCHHHHHHHHHH-CCCcEEeCCCcccccccccccccccccHHHHhhccccccHH-HHHHHHHHhcCcHHHHHHHHHH
Confidence 799999999999964 89999998875432210 00 001111 111100 0 0100 112223
Q ss_pred HhccCCcEEEeCCceeeCHhhHHhcc--CCeEEEEECCHHHHHHHHhccCCCCCCccccCCCCChhHHHHHHHHHHHHHH
Q 029455 60 LSLMRQLVVSTGGGAVTRPINWRYMQ--KGISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEER 137 (193)
Q Consensus 60 l~~~~~~vi~~g~~~v~~~~~~~~l~--~~~vV~L~~~~~~~~~Rl~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~r 137 (193)
+..... ++..| + ........++ ...+|||++|++++.+|+..|....++.... .+.+.+.+..+
T Consensus 91 ~~~~~~-ividG--~-r~~~q~~~l~~~~~~vi~l~~~~~~~~~Rl~~R~~~~~~~~~~----------~e~~~~~~~~~ 156 (195)
T PRK08356 91 KRNCKN-IAIDG--V-RSRGEVEAIKRMGGKVIYVEAKPEIRFERLRRRGAEKDKGIKS----------FEDFLKFDEWE 156 (195)
T ss_pred hccCCe-EEEcC--c-CCHHHHHHHHhcCCEEEEEECCHHHHHHHHHhcCCcccccccc----------HHHHHHHHHHH
Confidence 322222 44444 2 3344444443 2689999999999999998753222222111 23344443333
Q ss_pred HHHHh------hccceeechhhhhhcccccCCCCCHHHHHHHHHHHHHhh
Q 029455 138 GEAYA------NANARVSLENIAVKLGHKDVSSLTPVTIAIEALEQIEGF 181 (193)
Q Consensus 138 ~~~y~------~~~~~i~~~~~~~~~~~iDt~~~~~~~~~~~i~~~~~~~ 181 (193)
...|. .||++| ++ +.+.++++..|...+..+
T Consensus 157 ~~l~~~~~~~~~aD~vI------------~N-~~~~e~~~~~i~~~~~~~ 193 (195)
T PRK08356 157 EKLYHTTKLKDKADFVI------------VN-EGTLEELRKKVEEILREL 193 (195)
T ss_pred HHhhhhhhHHHhCcEEE------------EC-CCCHHHHHHHHHHHHHHh
Confidence 33332 377776 33 479999999998888654
No 59
>PLN02422 dephospho-CoA kinase
Probab=99.35 E-value=4e-11 Score=94.42 Aligned_cols=151 Identities=17% Similarity=0.144 Sum_probs=82.4
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHHHHHh-CCC-CHHHHHHHhcchhh----------------------HHHH---
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQSV-DGT-SVAEIFKLYGEGFF----------------------REKE--- 53 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~~~~~-~g~-~~~~~~~~~~~~~~----------------------~~~e--- 53 (193)
.+||||||+++.|+ ++|++++|+|.+.++.+ +|. ...++...+|...+ ..++
T Consensus 9 ~igsGKstv~~~l~-~~g~~~idaD~~~~~l~~~g~~~~~~l~~~FG~~il~~dG~idR~~L~~~VF~d~~~~~~Le~Il 87 (232)
T PLN02422 9 GIASGKSTVSNLFK-SSGIPVVDADKVARDVLKKGSGGWKRVVAAFGEDILLPDGEVDREKLGQIVFSDPSKRQLLNRLL 87 (232)
T ss_pred CCCCCHHHHHHHHH-HCCCeEEehhHHHHHHHHhhHHHHHHHHHHhCHHhcCCCCcCCHHHHHHHHhCCHHHHHHHHHHh
Confidence 48999999999998 58999999999988775 121 12344444443221 0010
Q ss_pred -----HHHHHHHh----ccCCcEEEeCCceeeCHh-hHHhccCCeEEEEECCHHHHHHHHhccCCCCCCccccCCCCChh
Q 029455 54 -----TEVLQKLS----LMRQLVVSTGGGAVTRPI-NWRYMQKGISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAY 123 (193)
Q Consensus 54 -----~~~~~~l~----~~~~~vi~~g~~~v~~~~-~~~~l~~~~vV~L~~~~~~~~~Rl~~~~~~~R~~~~~~~~~~~~ 123 (193)
..+...+. .....++... ++..+ .+.. .-+.+|+++||++++++|+.+| ..... +
T Consensus 88 HP~V~~~~~~~~~~~~~~~~~~vv~ei---pLL~E~~~~~-~~D~vI~V~a~~e~ri~RL~~R-----~g~s~----e-- 152 (232)
T PLN02422 88 APYISSGIFWEILKLWLKGCKVIVLDI---PLLFETKMDK-WTKPVVVVWVDPETQLERLMAR-----DGLSE----E-- 152 (232)
T ss_pred hHHHHHHHHHHHHHHHhcCCCEEEEEe---hhhhhcchhh-hCCEEEEEECCHHHHHHHHHHc-----CCCCH----H--
Confidence 00111111 1122333321 22111 1110 0278999999999999999974 22211 0
Q ss_pred HHHHHHHHHHHHHHHHHHhhccceeechhhhhhcccccCCCCCHHHHHHHHHHHHHhhh
Q 029455 124 TEALNRLSTLWEERGEAYANANARVSLENIAVKLGHKDVSSLTPVTIAIEALEQIEGFL 182 (193)
Q Consensus 124 ~~~~~~~~~~~~~r~~~y~~~~~~i~~~~~~~~~~~iDt~~~~~~~~~~~i~~~~~~~~ 182 (193)
++...+...+.. ...-..+|.+| ++ ..+.+++...+...++.+.
T Consensus 153 -ea~~Ri~~Q~~~-eek~~~AD~VI------------~N-~gs~e~L~~qv~~ll~~l~ 196 (232)
T PLN02422 153 -QARNRINAQMPL-DWKRSKADIVI------------DN-SGSLEDLKQQFQKVLEKIR 196 (232)
T ss_pred -HHHHHHHHcCCh-hHHHhhCCEEE------------EC-CCCHHHHHHHHHHHHHHHh
Confidence 123333222111 11122377776 44 3689999888887776653
No 60
>PRK00889 adenylylsulfate kinase; Provisional
Probab=99.34 E-value=2.6e-12 Score=97.14 Aligned_cols=148 Identities=16% Similarity=0.156 Sum_probs=84.4
Q ss_pred CCCCchHHHHHHHHHhcC-----CcEeechHHHHHHhCCCCHHHHHHHhcchhhHHHHHHHHHHHhccCCcEEEeCCcee
Q 029455 1 MMGSGKTTVGKILSGVLG-----YSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFREKETEVLQKLSLMRQLVVSTGGGAV 75 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg-----~~~~d~d~~~~~~~~g~~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~vi~~g~~~v 75 (193)
+|||||||+|+.|+..+. +.+++.|.+......+..... ..+...++.+. .+...+...+..|+. +...
T Consensus 12 ~~GsGKST~a~~la~~l~~~g~~v~~id~D~~~~~~~~~~~~~~---~~r~~~~~~~~-~~a~~~~~~g~~vi~-~~~~- 85 (175)
T PRK00889 12 LSGAGKTTIARALAEKLREAGYPVEVLDGDAVRTNLSKGLGFSK---EDRDTNIRRIG-FVANLLTRHGVIVLV-SAIS- 85 (175)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCeEEEEcCccHHHHHhcCCCCCh---hhHHHHHHHHH-HHHHHHHhCCCEEEE-ecCC-
Confidence 599999999999999872 677899987654431221110 11222233321 112222223333333 3222
Q ss_pred eCHhhHHhcc----CCeEEEEECCHHHHHHHHhccCCCCCCccccCCCCChhHHHHHHHHHHHHHHHHHHh-h-ccceee
Q 029455 76 TRPINWRYMQ----KGISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYA-N-ANARVS 149 (193)
Q Consensus 76 ~~~~~~~~l~----~~~vV~L~~~~~~~~~Rl~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~r~~~y~-~-~~~~i~ 149 (193)
.....+..+. ...+|||+||.+++.+|.. ||+..... .+.+..++..+.+.|. . +++++
T Consensus 86 ~~~~~~~~l~~~~~~~~~v~l~~~~e~~~~R~~------~~l~~~~~--------~~~i~~~~~~~~~~~~p~~ad~~i- 150 (175)
T PRK00889 86 PYRETREEVRANIGNFLEVFVDAPLEVCEQRDV------KGLYAKAR--------AGEIKHFTGIDDPYEPPLNPEVEC- 150 (175)
T ss_pred CCHHHHHHHHhhcCCeEEEEEcCCHHHHHHhCc------ccHHHHHH--------cCCCCCCcccCCCCCCCCCCcEEE-
Confidence 2333444332 2579999999999999952 33322100 0113333445666775 2 56554
Q ss_pred chhhhhhcccccCCCCCHHHHHHHHHHHHHh
Q 029455 150 LENIAVKLGHKDVSSLTPVTIAIEALEQIEG 180 (193)
Q Consensus 150 ~~~~~~~~~~iDt~~~~~~~~~~~i~~~~~~ 180 (193)
|+++.+++++++.|++++..
T Consensus 151 -----------~~~~~~~~~~~~~i~~~l~~ 170 (175)
T PRK00889 151 -----------RTDLESLEESVDKVLQKLEE 170 (175)
T ss_pred -----------ECCCCCHHHHHHHHHHHHHH
Confidence 67789999999999999863
No 61
>PRK03846 adenylylsulfate kinase; Provisional
Probab=99.34 E-value=3.5e-12 Score=98.38 Aligned_cols=145 Identities=18% Similarity=0.210 Sum_probs=82.7
Q ss_pred CCCCchHHHHHHHHHhc-----CCcEeechHHHHHHhC--CCCHHHHHHHhcchhhHHHHHHHHHHHhccCCcEEEeCCc
Q 029455 1 MMGSGKTTVGKILSGVL-----GYSFFDCDTLIEQSVD--GTSVAEIFKLYGEGFFREKETEVLQKLSLMRQLVVSTGGG 73 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l-----g~~~~d~d~~~~~~~~--g~~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~vi~~g~~ 73 (193)
++||||||+++.|+..+ |..+++.|.+...... +....+ ....++.+. .+...+...+..||. ...
T Consensus 32 ~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~~~~~~~~~~~~~-----~~~~~~~l~-~~a~~~~~~G~~VI~-~~~ 104 (198)
T PRK03846 32 LSGSGKSTVAGALEEALHELGVSTYLLDGDNVRHGLCSDLGFSDAD-----RKENIRRVG-EVAKLMVDAGLVVLT-AFI 104 (198)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHhhhhhcCCcCccc-----HHHHHHHHH-HHHHHHhhCCCEEEE-EeC
Confidence 58999999999999876 4578888887654331 111111 112233221 122223333444443 211
Q ss_pred eeeCHhhH----HhccC-Ce-EEEEECCHHHHHHHHhccCCCCCCccccCCCCChhHHHHHHHHHHHHHHHHHHh--h-c
Q 029455 74 AVTRPINW----RYMQK-GI-SVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYA--N-A 144 (193)
Q Consensus 74 ~v~~~~~~----~~l~~-~~-vV~L~~~~~~~~~Rl~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~r~~~y~--~-~ 144 (193)
-...+.+ ..+.. ++ +|||+||.+++.+|.. ||+..... ...+..++..|.+ |+ . +
T Consensus 105 -~~~~~~R~~~r~~l~~~~~i~V~L~~~~e~~~~R~~------r~l~~~~~--------~~~~~~l~~~r~~-Y~~p~~a 168 (198)
T PRK03846 105 -SPHRAERQMVRERLGEGEFIEVFVDTPLAICEARDP------KGLYKKAR--------AGEIRNFTGIDSV-YEAPESP 168 (198)
T ss_pred -CCCHHHHHHHHHHcccCCEEEEEEcCCHHHHHhcCc------hhHHHHhh--------cCCccCccccccc-CCCCCCC
Confidence 1122222 23333 44 7999999999999921 44432200 1123334455556 76 4 4
Q ss_pred cceeechhhhhhcccccCCCCCHHHHHHHHHHHHHh
Q 029455 145 NARVSLENIAVKLGHKDVSSLTPVTIAIEALEQIEG 180 (193)
Q Consensus 145 ~~~i~~~~~~~~~~~iDt~~~~~~~~~~~i~~~~~~ 180 (193)
+++ |||++.++++++++|++.+..
T Consensus 169 d~~------------Idt~~~~~~~vv~~Il~~l~~ 192 (198)
T PRK03846 169 EIH------------LDTGEQLVTNLVEQLLDYLRQ 192 (198)
T ss_pred CEE------------EECCCCCHHHHHHHHHHHHHH
Confidence 555 588899999999999998864
No 62
>PLN02459 probable adenylate kinase
Probab=99.33 E-value=1.3e-10 Score=92.71 Aligned_cols=102 Identities=21% Similarity=0.251 Sum_probs=63.6
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHHHHHh-C----CCCHHHHHHHhcchhhHHHHHHHHH-HHhc-----cCCcEEE
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQSV-D----GTSVAEIFKLYGEGFFREKETEVLQ-KLSL-----MRQLVVS 69 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~~~~~-~----g~~~~~~~~~~~~~~~~~~e~~~~~-~l~~-----~~~~vi~ 69 (193)
||||||||+|+.|++.+|+.+++++++++... . |..+.+++ ..|....-++-..++. .+.. ...+|+
T Consensus 37 ~PGsGK~T~a~~la~~~~~~~is~gdllR~ei~~~t~lg~~i~~~~-~~G~lVPdeiv~~ll~~~l~~~~~~~~~g~iL- 114 (261)
T PLN02459 37 CPGVGKGTYASRLSKLLGVPHIATGDLVREEIKSSGPLGAQLKEIV-NQGKLVPDEIIFSLLSKRLEAGEEEGESGFIL- 114 (261)
T ss_pred CCCCCHHHHHHHHHHHhCCcEEeCcHHHHHHHhccchhHHHHHHHH-HcCCccCHHHHHHHHHHHHhcccccCCceEEE-
Confidence 79999999999999999999999999998754 1 22233333 2343333222222222 2321 123344
Q ss_pred eCCceeeCHhhHHhcc---C-CeEEEEECCHHHHHHHHhcc
Q 029455 70 TGGGAVTRPINWRYMQ---K-GISVWLDVPLEALAQRIAAV 106 (193)
Q Consensus 70 ~g~~~v~~~~~~~~l~---~-~~vV~L~~~~~~~~~Rl~~~ 106 (193)
.| ++........|. . +.+|+|++|.+++++|+..|
T Consensus 115 DG--FPRt~~Qa~~Le~~~~id~Vi~L~v~d~~l~~Rl~gR 153 (261)
T PLN02459 115 DG--FPRTVRQAEILEGVTDIDLVVNLKLREEVLVEKCLGR 153 (261)
T ss_pred eC--CCCCHHHHHHHHhcCCCCEEEEEECCHHHHHHHhhcc
Confidence 34 444333222332 2 78999999999999999875
No 63
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=99.33 E-value=1.5e-11 Score=89.12 Aligned_cols=127 Identities=22% Similarity=0.368 Sum_probs=77.0
Q ss_pred CCCchHHHHHHHHHhcCCcEeechHHHHHHhCCCCHHHHHHHhcchh--hHHHHHHHHHHH---hccCCcEEEeCCceee
Q 029455 2 MGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGEGF--FREKETEVLQKL---SLMRQLVVSTGGGAVT 76 (193)
Q Consensus 2 ~GsGKSTia~~La~~lg~~~~d~d~~~~~~~~g~~~~~~~~~~~~~~--~~~~e~~~~~~l---~~~~~~vi~~g~~~v~ 76 (193)
||+||||+|.+||+.+|+++++..+++++.- ++..+.+.+ ..--+..++..| ...+++|+..++ +=+
T Consensus 16 PG~GKstl~~~lae~~~~~~i~isd~vkEn~-------l~~gyDE~y~c~i~DEdkv~D~Le~~m~~Gg~IVDyHg-Cd~ 87 (176)
T KOG3347|consen 16 PGTGKSTLAERLAEKTGLEYIEISDLVKENN-------LYEGYDEEYKCHILDEDKVLDELEPLMIEGGNIVDYHG-CDF 87 (176)
T ss_pred CCCCchhHHHHHHHHhCCceEehhhHHhhhc-------chhcccccccCccccHHHHHHHHHHHHhcCCcEEeecc-cCc
Confidence 8999999999999999999999999987642 111111111 111123344433 234677887653 222
Q ss_pred CHhhHHhccCCeEEEEECCHHHHHHHHhccCCCCCCccccCCCCChhHHHHHHHHHHHHHHHHHHhhccceee
Q 029455 77 RPINWRYMQKGISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVS 149 (193)
Q Consensus 77 ~~~~~~~l~~~~vV~L~~~~~~~~~Rl~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~r~~~y~~~~~~i~ 149 (193)
+++.|- ++||.|+||-.++-.||..|+........+ ...+.+.-.+++....|+. +.+..
T Consensus 88 Fperwf----dlVvVLr~~~s~LY~RL~sRgY~e~Ki~eN--------iecEIfgv~~eea~eSy~~-~iV~e 147 (176)
T KOG3347|consen 88 FPERWF----DLVVVLRTPNSVLYDRLKSRGYSEKKIKEN--------IECEIFGVVLEEARESYSP-KIVVE 147 (176)
T ss_pred cchhhe----eEEEEEecCchHHHHHHHHcCCCHHHHhhh--------cchHHHHHHHHHHHHHcCC-cceee
Confidence 343332 689999999999999999854211111111 1235566666666566654 45543
No 64
>PTZ00088 adenylate kinase 1; Provisional
Probab=99.33 E-value=1.3e-10 Score=91.56 Aligned_cols=102 Identities=14% Similarity=0.230 Sum_probs=61.4
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHHHHHhC-----CCCHHHHHHHhcchh----hHHHHHHHHHHHhc-c-CCcEEE
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVD-----GTSVAEIFKLYGEGF----FREKETEVLQKLSL-M-RQLVVS 69 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~~~~~~-----g~~~~~~~~~~~~~~----~~~~e~~~~~~l~~-~-~~~vi~ 69 (193)
||||||||+|+.||+++|++++++|+++++... |..+.++..+ |... ...+....+.++.. . ..+|+
T Consensus 14 ~PGsGK~T~a~~La~~~g~~~is~gdllr~~~~~~t~lg~~i~~~~~~-G~lvpd~iv~~lv~~~l~~~~~~~~~g~iL- 91 (229)
T PTZ00088 14 APGVGKGTFAEILSKKENLKHINMGNILREEIKAKTTIGKEIQKVVTS-GNLVPDNLVIAIVKDEIAKVTDDCFKGFIL- 91 (229)
T ss_pred CCCCCHHHHHHHHHHHhCCcEEECChHHHHHhhcCChHHHHHHHHHHc-CCcCCHHHHHHHHHHHHHhhccccCceEEE-
Confidence 799999999999999999999999999987541 1122333322 3211 11111111222111 1 23444
Q ss_pred eCCceeeCHhhHHhcc----CCeEEEEECCHHHHHHHHhcc
Q 029455 70 TGGGAVTRPINWRYMQ----KGISVWLDVPLEALAQRIAAV 106 (193)
Q Consensus 70 ~g~~~v~~~~~~~~l~----~~~vV~L~~~~~~~~~Rl~~~ 106 (193)
.| ++........|. .+++|+|++|.+++++|+..|
T Consensus 92 DG--fPRt~~Qa~~l~~~~~~~~vi~l~~~~~~~~~Rl~~R 130 (229)
T PTZ00088 92 DG--FPRNLKQCKELGKITNIDLFVNIYLPRNILIKKLLGR 130 (229)
T ss_pred ec--CCCCHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHcC
Confidence 34 333222222221 378999999999999999875
No 65
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=99.32 E-value=2.8e-12 Score=95.49 Aligned_cols=150 Identities=19% Similarity=0.204 Sum_probs=83.5
Q ss_pred CCCCchHHHHHHHHHhc---C--CcEeechHHHHHHhCCCCHHHHHHHhcchhhHHHHHHHHHHHhccCCcEEEeCCcee
Q 029455 1 MMGSGKTTVGKILSGVL---G--YSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFREKETEVLQKLSLMRQLVVSTGGGAV 75 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l---g--~~~~d~d~~~~~~~~g~~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~vi~~g~~~v 75 (193)
+|||||||||..|.++| | ..++|.|.+.....++.... .+++.++.+++ ..+.+-+...+ .|+.+..-.+
T Consensus 31 LSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL~~dLgFs---~edR~eniRRv-aevAkll~daG-~iviva~ISP 105 (197)
T COG0529 31 LSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLNRDLGFS---REDRIENIRRV-AEVAKLLADAG-LIVIVAFISP 105 (197)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhcccCCCCCC---hHHHHHHHHHH-HHHHHHHHHCC-eEEEEEeeCc
Confidence 58999999999999987 3 45789999866543222211 12334445543 22333334333 3333331112
Q ss_pred eCHhhH----HhccC--CeEEEEECCHHHHHHHHhccCCCCCCccccCCCCChhHHHHHHHHHHHHHHHHHHhhccceee
Q 029455 76 TRPINW----RYMQK--GISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVS 149 (193)
Q Consensus 76 ~~~~~~----~~l~~--~~vV~L~~~~~~~~~Rl~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~r~~~y~~~~~~i~ 149 (193)
..+.+ +.+.. .+.||++||.++|.+|--+ +++.+...++ +..+-. -...|+.+
T Consensus 106 -~r~~R~~aR~~~~~~~FiEVyV~~pl~vce~RDpK------GLYkKAr~Ge--------I~~fTG-id~pYE~P----- 164 (197)
T COG0529 106 -YREDRQMARELLGEGEFIEVYVDTPLEVCERRDPK------GLYKKARAGE--------IKNFTG-IDSPYEAP----- 164 (197)
T ss_pred -cHHHHHHHHHHhCcCceEEEEeCCCHHHHHhcCch------HHHHHHHcCC--------CCCCcC-CCCCCCCC-----
Confidence 22223 33433 5789999999999998754 2222111111 111111 11245531
Q ss_pred chhhhhhcccccCCCCCHHHHHHHHHHHHHh
Q 029455 150 LENIAVKLGHKDVSSLTPVTIAIEALEQIEG 180 (193)
Q Consensus 150 ~~~~~~~~~~iDt~~~~~~~~~~~i~~~~~~ 180 (193)
.+.+++|||+..++++.++.|++++..
T Consensus 165 ----~~Pel~l~t~~~~vee~v~~i~~~l~~ 191 (197)
T COG0529 165 ----ENPELHLDTDRNSVEECVEQILDLLKE 191 (197)
T ss_pred ----CCCeeEeccccCCHHHHHHHHHHHHHh
Confidence 011124699999999999999998864
No 66
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=99.32 E-value=5.3e-11 Score=100.89 Aligned_cols=153 Identities=24% Similarity=0.280 Sum_probs=85.6
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHHHHHhC-CC-CHHHHHHHhcchh----------------hHHHHH-HHHH---
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVD-GT-SVAEIFKLYGEGF----------------FREKET-EVLQ--- 58 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~~~~~~-g~-~~~~~~~~~~~~~----------------~~~~e~-~~~~--- 58 (193)
++||||||+++.|++ +|++++|+|.+.++.+. |. ...+++..+|... |...+. ..+.
T Consensus 9 ~igsGKStv~~~L~~-~G~~vidaD~i~~~l~~~~~~~~~~i~~~fG~~il~~~G~idr~~L~~~vF~~~~~~~~le~i~ 87 (395)
T PRK03333 9 GIGAGKSTVAARLAE-LGAVVVDADVLAREVVEPGTEGLAALVAAFGDDILLADGALDRPALAAKAFADDEARAVLNGIV 87 (395)
T ss_pred CCCCCHHHHHHHHHH-CCCeEEehHHHHHHHhcCChHHHHHHHHHhChHhcCCCCcCCHHHHHHHHhCCHHHHHHHHHhh
Confidence 589999999999987 89999999999988762 21 2345555555442 211110 0111
Q ss_pred ---------H-Hhc-cCCcEEEeCCceeeCHhhHHhccCCeEEEEECCHHHHHHHHhccCCCCCCccccCCCCChhHHHH
Q 029455 59 ---------K-LSL-MRQLVVSTGGGAVTRPINWRYMQKGISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEAL 127 (193)
Q Consensus 59 ---------~-l~~-~~~~vi~~g~~~v~~~~~~~~l~~~~vV~L~~~~~~~~~Rl~~~~~~~R~~~~~~~~~~~~~~~~ 127 (193)
+ +.. .+..++..+... +....+.. .-+.+|||+||.+++++|+.++ |+.... .+.
T Consensus 88 hP~I~~~i~~~i~~~~~~~vvv~eipL-L~E~~~~~-~~D~iI~V~ap~e~ri~Rl~~r----Rg~s~~--------~a~ 153 (395)
T PRK03333 88 HPLVGARRAELIAAAPEDAVVVEDIPL-LVESGMAP-LFHLVVVVDADVEVRVRRLVEQ----RGMAEA--------DAR 153 (395)
T ss_pred hHHHHHHHHHHHHhcCCCCEEEEEeee-eecCCchh-hCCEEEEEECCHHHHHHHHHhc----CCCCHH--------HHH
Confidence 1 111 122233222111 11111100 0168999999999999999863 443211 122
Q ss_pred HHHHHHHHHHHHHHhhccceeechhhhhhcccccCCCCCHHHHHHHHHHHHHhhh
Q 029455 128 NRLSTLWEERGEAYANANARVSLENIAVKLGHKDVSSLTPVTIAIEALEQIEGFL 182 (193)
Q Consensus 128 ~~~~~~~~~r~~~y~~~~~~i~~~~~~~~~~~iDt~~~~~~~~~~~i~~~~~~~~ 182 (193)
..+..... ....-..+|.+| |+ +.+++++...+.+.++..+
T Consensus 154 ~ri~~Q~~-~e~k~~~AD~vI------------dN-~~s~e~l~~~v~~~l~~~~ 194 (395)
T PRK03333 154 ARIAAQAS-DEQRRAVADVWL------------DN-SGTPDELVEAVRALWADRL 194 (395)
T ss_pred HHHHhcCC-hHHHHHhCCEEE------------EC-CCCHHHHHHHHHHHHHHHH
Confidence 23322111 112233377776 53 5789999999888877665
No 67
>PLN02842 nucleotide kinase
Probab=99.30 E-value=1.8e-10 Score=99.37 Aligned_cols=172 Identities=19% Similarity=0.210 Sum_probs=93.6
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHHHHHhC-C----CCHHHHHHHhcchhhHHHHHHHHH-HHh----ccCCcEEEe
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVD-G----TSVAEIFKLYGEGFFREKETEVLQ-KLS----LMRQLVVST 70 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~~~~~~-g----~~~~~~~~~~~~~~~~~~e~~~~~-~l~----~~~~~vi~~ 70 (193)
+|||||||+|+.|++.+|+.+++++++++.... + ..+.+++. .|.......-..++. ++. ....+|+ .
T Consensus 5 ~PGSGKSTqa~~Lak~lg~~hIs~gdLLR~ev~~~T~iG~~Ire~l~-~G~lvPdeiv~~ll~drl~~~~~~~~G~IL-D 82 (505)
T PLN02842 5 APASGKGTQCELIVHKFGLVHISTGDLLRAEVSAGTDIGKRAKEFMN-SGRLVPDEIVIAMVTGRLSREDAKEKGWLL-D 82 (505)
T ss_pred CCCCCHHHHHHHHHHHhCCCEEEccHHHHHHhccCCHHHHHHHHHHh-CCCCCcHHHHHHHHHHHHhCccccCCcEEE-e
Confidence 699999999999999999999999998876431 2 22333332 222211111111222 221 1234555 4
Q ss_pred CCceeeCHhhHHhc-----cCCeEEEEECCHHHHHHHHhccCCCC---C--------C--------ccccCCCCChhHHH
Q 029455 71 GGGAVTRPINWRYM-----QKGISVWLDVPLEALAQRIAAVGTDS---R--------P--------LLHQCESGDAYTEA 126 (193)
Q Consensus 71 g~~~v~~~~~~~~l-----~~~~vV~L~~~~~~~~~Rl~~~~~~~---R--------~--------~~~~~~~~~~~~~~ 126 (193)
| ++........| ..+++|+|++|++++++|+..|..++ + | +.. +++|..+..
T Consensus 83 G--fPRt~~Qa~~Le~~~~~PDlVI~LDvpdevlleRl~gR~~dp~tG~iYh~~~~pP~~~~~~~rL~~--R~DD~eE~I 158 (505)
T PLN02842 83 G--YPRSFAQAQSLEKLKIRPDIFILLDVPDEILIDRCVGRRLDPVTGKIYHIKNFPPESEEIKARLIT--RPDDTEEKV 158 (505)
T ss_pred C--CCCcHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhccccccccCCccccccCCCCcccccccccc--CCCCCHHHH
Confidence 4 33332222222 13799999999999999998653110 0 0 011 123332223
Q ss_pred HHHHHHHHHHHHHHHhhccceeechhhhhhcccccCCCCCHHHHHHHHHHHHHhhhcccchh
Q 029455 127 LNRLSTLWEERGEAYANANARVSLENIAVKLGHKDVSSLTPVTIAIEALEQIEGFLKEEDDM 188 (193)
Q Consensus 127 ~~~~~~~~~~r~~~y~~~~~~i~~~~~~~~~~~iDt~~~~~~~~~~~i~~~~~~~~~~~~~~ 188 (193)
.+++........+..+..... ...||. ..+++++.+.|...+...+.+...|
T Consensus 159 kkRL~~Y~~~t~pIl~~Y~~r---------l~~IDA-sqs~EeVfeeI~~iL~~~L~~~~~~ 210 (505)
T PLN02842 159 KARLQIYKKNAEAILSTYSDI---------MVKIDG-NRPKEVVFEEISSLLSQIQKDATKM 210 (505)
T ss_pred HHHHHHHHHHhhhHHHhcCcE---------EEEEEC-CCCHHHHHHHHHHHHHHHHhhhhhh
Confidence 333322222222222211111 124785 5799999999999998887665543
No 68
>PRK08233 hypothetical protein; Provisional
Probab=99.30 E-value=7.7e-11 Score=89.16 Aligned_cols=158 Identities=16% Similarity=0.149 Sum_probs=78.3
Q ss_pred CCCCchHHHHHHHHHhcC-CcEeechHHHHHHhCCCCHHHHHHHhcchh----hHHHHHHHHHHHhccC--CcEEEeCCc
Q 029455 1 MMGSGKTTVGKILSGVLG-YSFFDCDTLIEQSVDGTSVAEIFKLYGEGF----FREKETEVLQKLSLMR--QLVVSTGGG 73 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg-~~~~d~d~~~~~~~~g~~~~~~~~~~~~~~----~~~~e~~~~~~l~~~~--~~vi~~g~~ 73 (193)
+|||||||+|+.|++.++ ..++..|.+..... ...+..... .+..+ ...+ ...+..+.... .+||..+..
T Consensus 11 ~~GsGKtTla~~L~~~l~~~~~~~~d~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~-~~~l~~~~~~~~~~~vivd~~~ 87 (182)
T PRK08233 11 VSGGGKTTLTERLTHKLKNSKALYFDRYDFDNC-PEDICKWID-KGANYSEWVLTPL-IKDIQELIAKSNVDYIIVDYPF 87 (182)
T ss_pred CCCCCHHHHHHHHHhhCCCCceEEECCEEcccC-chhhhhhhh-ccCChhhhhhHHH-HHHHHHHHcCCCceEEEEeeeh
Confidence 589999999999999996 44454444321111 000111111 11110 1111 11122233222 445554421
Q ss_pred eeeCHhhHHhccCCeEEEEECCHHHHHHHHhccCCCCCCccccCCCCChhHHHHHHHHHHHHHHHHHHhh--ccceeech
Q 029455 74 AVTRPINWRYMQKGISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYAN--ANARVSLE 151 (193)
Q Consensus 74 ~v~~~~~~~~l~~~~vV~L~~~~~~~~~Rl~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~r~~~y~~--~~~~i~~~ 151 (193)
....+..... .+.+|||++|++++.+|+.+|.. .++ . .+ ...+.+...+..+.+.|.. .+..
T Consensus 88 ~~~~~~~~~~--~d~~i~l~~~~~~~~~R~~~R~~-~~~---~---~~---~~~~~~~~~~~~~~~~y~~~~~~~~---- 151 (182)
T PRK08233 88 AYLNSEMRQF--IDVTIFIDTPLDIAMARRILRDF-KED---T---GN---EIHNDLKHYLNYARPLYLEALHTVK---- 151 (182)
T ss_pred hhccHHHHHH--cCEEEEEcCCHHHHHHHHHHHHh-hhc---c---cc---chhhHHHHHHHHHHHHHHHHhhcCc----
Confidence 1122221111 27999999999999999876421 111 0 11 1223344455545555553 1100
Q ss_pred hhhhhcccccCCCCCHHHHHHHHHHHHHh
Q 029455 152 NIAVKLGHKDVSSLTPVTIAIEALEQIEG 180 (193)
Q Consensus 152 ~~~~~~~~iDt~~~~~~~~~~~i~~~~~~ 180 (193)
...+.+||+ ..+++++.+.|...+..
T Consensus 152 --~~~~~vId~-~~~~e~i~~~i~~~l~~ 177 (182)
T PRK08233 152 --PNADIVLDG-ALSVEEIINQIEEELYR 177 (182)
T ss_pred --cCCeEEEcC-CCCHHHHHHHHHHHHHh
Confidence 001123675 58999999999988764
No 69
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=99.30 E-value=5.3e-11 Score=91.70 Aligned_cols=32 Identities=31% Similarity=0.510 Sum_probs=29.5
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHHHHHh
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQSV 32 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~~~~~ 32 (193)
++||||||+++.|++.+|++++|+|.+.++.+
T Consensus 9 ~~gsGKst~~~~l~~~~g~~~i~~D~~~~~~~ 40 (195)
T PRK14730 9 GIASGKSTVGNYLAQQKGIPILDADIYAREAL 40 (195)
T ss_pred CCCCCHHHHHHHHHHhhCCeEeeCcHHHHHHH
Confidence 68999999999999988999999999988765
No 70
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=99.30 E-value=7.3e-11 Score=90.26 Aligned_cols=32 Identities=34% Similarity=0.540 Sum_probs=28.9
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHHHHHh
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQSV 32 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~~~~~ 32 (193)
.+||||||+++.|++..|++++|+|.+.++.+
T Consensus 7 ~~gsGKst~~~~l~~~~~~~~i~~D~~~~~~~ 38 (188)
T TIGR00152 7 GIGSGKSTVANYLADKYHFPVIDADKIAHQVV 38 (188)
T ss_pred CCCCCHHHHHHHHHHhcCCeEEeCCHHHHHHH
Confidence 48999999999999876799999999988766
No 71
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=99.29 E-value=1.2e-10 Score=89.85 Aligned_cols=152 Identities=23% Similarity=0.247 Sum_probs=83.0
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHHHHHh-CC-CCHHHHHHHhcchh----------------hHHH-HHHHHHHHh
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQSV-DG-TSVAEIFKLYGEGF----------------FREK-ETEVLQKLS 61 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~~~~~-~g-~~~~~~~~~~~~~~----------------~~~~-e~~~~~~l~ 61 (193)
+|||||||+++.+++ +|++++|+|.++++.+ +| .....+...+|... |... ....++.+.
T Consensus 10 ~igsGKStva~~~~~-~G~~vidaD~v~r~~~~~~~~~~~~i~~~fG~~i~~~dg~~~r~~L~~~vf~~~~~~~~Le~i~ 88 (201)
T COG0237 10 GIGSGKSTVAKILAE-LGFPVIDADDVAREVVEPGGEALQEIAERFGLEILDEDGGLDRRKLREKVFNDPEARLKLEKIL 88 (201)
T ss_pred CCCCCHHHHHHHHHH-cCCeEEEccHHHHHHHhccchHHHHHHHHcCCcccCCCchhHHHHHHHHHcCCHHHHHHHHHhh
Confidence 589999999999988 9999999999998654 12 22233333333211 1100 011111111
Q ss_pred c--------------cCCcEEEeCCceeeCHhhHHhcc-CCeEEEEECCHHHHHHHHhccCCCCCCccccCCCCChhHHH
Q 029455 62 L--------------MRQLVVSTGGGAVTRPINWRYMQ-KGISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEA 126 (193)
Q Consensus 62 ~--------------~~~~vi~~g~~~v~~~~~~~~l~-~~~vV~L~~~~~~~~~Rl~~~~~~~R~~~~~~~~~~~~~~~ 126 (193)
. ....++.. +++..+.+. .. -+.+|+++||++++.+|+++| +.... . ..
T Consensus 89 hPli~~~~~~~~~~~~~~~~~~e---iplL~e~~~-~~~~d~Vi~V~a~~e~r~eRl~~R-----~~~~~---e----~~ 152 (201)
T COG0237 89 HPLIRAEIKVVIDGARSPYVVLE---IPLLFEAGG-EKYFDKVIVVYAPPEIRLERLMKR-----DGLDE---E----DA 152 (201)
T ss_pred hHHHHHHHHHHHHHhhCCceEEE---chHHHhccc-cccCCEEEEEECCHHHHHHHHHhc-----CCCCH---H----HH
Confidence 0 01122211 122111110 01 157999999999999999983 32221 0 11
Q ss_pred HHHHHHHHHHHHHHHhhccceeechhhhhhcccccCCCCCHHHHHHHHHHHHHhhhc
Q 029455 127 LNRLSTLWEERGEAYANANARVSLENIAVKLGHKDVSSLTPVTIAIEALEQIEGFLK 183 (193)
Q Consensus 127 ~~~~~~~~~~r~~~y~~~~~~i~~~~~~~~~~~iDt~~~~~~~~~~~i~~~~~~~~~ 183 (193)
...+......+ ..+..+|.++ |+ +.+++++.+.|.+.+...+.
T Consensus 153 ~~~~~~Q~~~~-ek~~~ad~vi------------~n-~~~i~~l~~~i~~~~~~~~~ 195 (201)
T COG0237 153 EARLASQRDLE-EKLALADVVI------------DN-DGSIENLLEQIEKLLKELLG 195 (201)
T ss_pred HHHHHhcCCHH-HHHhhcCChh------------hc-CCCHHHHHHHHHHHHHHHHh
Confidence 22222222222 2244577776 54 57888899988888877654
No 72
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=99.29 E-value=1e-10 Score=89.39 Aligned_cols=103 Identities=21% Similarity=0.255 Sum_probs=61.6
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHHHHHhCCC-C----HHHHHHHhcchhhHHHHHHHHH-HHhc---cCCcEEEeC
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGT-S----VAEIFKLYGEGFFREKETEVLQ-KLSL---MRQLVVSTG 71 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~~~~~~g~-~----~~~~~~~~~~~~~~~~e~~~~~-~l~~---~~~~vi~~g 71 (193)
+|||||||+|+.||+++|+++++.|++++....+. . +.+++.. |..........++. .+.. ...+|+. |
T Consensus 7 ~pGsGKst~a~~La~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~l~~~~~~~~~vld-g 84 (194)
T cd01428 7 PPGSGKGTQAERLAKKYGLPHISTGDLLREEIASGTELGKKAKEYIDS-GKLVPDEIVIKLLKERLKKPDCKKGFILD-G 84 (194)
T ss_pred CCCCCHHHHHHHHHHHcCCeEEECcHHHHHHHhcCChHHHHHHHHHHc-CCccCHHHHHHHHHHHHhcccccCCEEEe-C
Confidence 69999999999999999999999999987654111 1 1222211 22111222122222 2322 2344553 4
Q ss_pred CceeeCHhhH----Hhcc----CCeEEEEECCHHHHHHHHhccC
Q 029455 72 GGAVTRPINW----RYMQ----KGISVWLDVPLEALAQRIAAVG 107 (193)
Q Consensus 72 ~~~v~~~~~~----~~l~----~~~vV~L~~~~~~~~~Rl~~~~ 107 (193)
++...... ..+. .+++|||++|++++.+|+..|.
T Consensus 85 --~Pr~~~q~~~l~~~~~~~~~~~~~i~l~~~~~~~~~Rl~~R~ 126 (194)
T cd01428 85 --FPRTVDQAEALDELLDEGIKPDKVIELDVPDEVLIERILGRR 126 (194)
T ss_pred --CCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCC
Confidence 33222211 1222 3689999999999999999863
No 73
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=99.29 E-value=1.7e-10 Score=91.53 Aligned_cols=32 Identities=25% Similarity=0.359 Sum_probs=29.4
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHHHHHh
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQSV 32 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~~~~~ 32 (193)
.+||||||+++.|++.+|++++|+|.+.++.+
T Consensus 9 gIgSGKStVs~~L~~~~G~~viDaD~iar~l~ 40 (244)
T PTZ00451 9 GIACGKSTVSRILREEHHIEVIDADLVVRELQ 40 (244)
T ss_pred CCCCCHHHHHHHHHHHcCCeEEehHHHHHHHH
Confidence 37999999999999889999999999988876
No 74
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=99.28 E-value=1.7e-10 Score=88.89 Aligned_cols=151 Identities=21% Similarity=0.189 Sum_probs=84.1
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHHHHHh-CCCC-HHHHHHHhcchhh----------------------HHHH---
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQSV-DGTS-VAEIFKLYGEGFF----------------------REKE--- 53 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~~~~~-~g~~-~~~~~~~~~~~~~----------------------~~~e--- 53 (193)
++||||||+++.|++ +|++++++|.+.+..+ +|.. ...+...+|...+ ..++
T Consensus 7 ~~gsGKst~~~~l~~-~g~~~i~~D~i~~~~~~~~~~~~~~i~~~fG~~i~~~~g~idr~~L~~~vF~~~~~~~~L~~i~ 85 (196)
T PRK14732 7 MIGGGKSTALKILEE-LGAFGISADRLAKRYTEPDSPILSELVSLLGPSILDENGKPNRKKISEIVFNDEEKLKALNELI 85 (196)
T ss_pred CCCccHHHHHHHHHH-CCCEEEecchHHHHHHhcCcHHHHHHHHHhChhhcCCCCccCHHHHHHHHhCCHHHHHHHHHHh
Confidence 589999999999975 7999999999988765 2322 2333333433221 0000
Q ss_pred -----H---HHHHHHhccCCcEEEeCCceeeC-HhhHHhccCCeEEEEECCHHHHHHHHhccCCCCCCccccCCCCChhH
Q 029455 54 -----T---EVLQKLSLMRQLVVSTGGGAVTR-PINWRYMQKGISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYT 124 (193)
Q Consensus 54 -----~---~~~~~l~~~~~~vi~~g~~~v~~-~~~~~~l~~~~vV~L~~~~~~~~~Rl~~~~~~~R~~~~~~~~~~~~~ 124 (193)
. +.+... .....++... ++. ...+.. .-+.+||++||++++.+|+.+| ..... +
T Consensus 86 hP~v~~~~~~~~~~~-~~~~~vi~e~---pLL~E~~~~~-~~D~vi~V~a~~e~r~~RL~~R-----~g~s~----e--- 148 (196)
T PRK14732 86 HPLVRKDFQKILQTT-AEGKLVIWEV---PLLFETDAYT-LCDATVTVDSDPEESILRTISR-----DGMKK----E--- 148 (196)
T ss_pred hHHHHHHHHHHHHHH-hcCCcEEEEe---eeeeEcCchh-hCCEEEEEECCHHHHHHHHHHc-----CCCCH----H---
Confidence 0 001111 1123444322 221 111110 0178999999999999999974 22111 1
Q ss_pred HHHHHHHHHHHHHHHHHhhccceeechhhhhhcccccCCCCCHHHHHHHHHHHHHhhhc
Q 029455 125 EALNRLSTLWEERGEAYANANARVSLENIAVKLGHKDVSSLTPVTIAIEALEQIEGFLK 183 (193)
Q Consensus 125 ~~~~~~~~~~~~r~~~y~~~~~~i~~~~~~~~~~~iDt~~~~~~~~~~~i~~~~~~~~~ 183 (193)
++...+..... ....-+.+|.+| ++ +.+.+++..++...++++++
T Consensus 149 ~a~~ri~~Q~~-~~~k~~~aD~vI------------~N-~~~~~~l~~~v~~l~~~~~~ 193 (196)
T PRK14732 149 DVLARIASQLP-ITEKLKRADYIV------------RN-DGNREGLKEECKILYSTLLK 193 (196)
T ss_pred HHHHHHHHcCC-HHHHHHhCCEEE------------EC-CCCHHHHHHHHHHHHHHHHH
Confidence 22333332211 112223378876 44 45899999999888877654
No 75
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=99.28 E-value=8.6e-11 Score=88.89 Aligned_cols=144 Identities=17% Similarity=0.115 Sum_probs=75.9
Q ss_pred CCCCchHHHHHHHHHhcCCcE--eechHHHHHHhCCCCHH---HH-HHH----hcc----hhhHHHHHHHHHHHhccCCc
Q 029455 1 MMGSGKTTVGKILSGVLGYSF--FDCDTLIEQSVDGTSVA---EI-FKL----YGE----GFFREKETEVLQKLSLMRQL 66 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~--~d~d~~~~~~~~g~~~~---~~-~~~----~~~----~~~~~~e~~~~~~l~~~~~~ 66 (193)
+|||||||+|+.|++.++.++ ++.|.++.... +.... .+ +.. ..+ ..|.... ..+..++..+..
T Consensus 10 ~~gsGKst~a~~l~~~~~~~~~~~~~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~-~~~~~~l~~G~~ 87 (175)
T cd00227 10 GSSAGKSSIARALQSVLAEPWLHFGVDSFIEALP-LKCQDAEGGIEFDGDGGVSPGPEFRLLEGAWY-EAVAAMARAGAN 87 (175)
T ss_pred CCCCCHHHHHHHHHHhhCCCccccCccHHHHhcC-hhhcccccccccCccCCcccchHHHHHHHHHH-HHHHHHHhCCCc
Confidence 699999999999999987654 47887765432 11000 00 000 000 1222221 223334444444
Q ss_pred EEEeCCceeeCHhhHH---hcc--CCeEEEEECCHHHHHHHHhccCCCCCCccccCCCCChhHHHHHHHHHHHHHHHHHH
Q 029455 67 VVSTGGGAVTRPINWR---YMQ--KGISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAY 141 (193)
Q Consensus 67 vi~~g~~~v~~~~~~~---~l~--~~~vV~L~~~~~~~~~Rl~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~r~~~y 141 (193)
||.... +......+. .+. +-..|||.||.+++.+|+.+|+ ... .. + ...... ..+
T Consensus 88 VIvD~~-~~~~~~~r~~~~~~~~~~~~~v~l~~~~~~l~~R~~~R~---~~~-~~----------~--~~~~~~---~~~ 147 (175)
T cd00227 88 VIADDV-FLGRAALQDCWRSFVGLDVLWVGVRCPGEVAEGRETARG---DRV-PG----------Q--ARKQAR---VVH 147 (175)
T ss_pred EEEeee-ccCCHHHHHHHHHhcCCCEEEEEEECCHHHHHHHHHhcC---Ccc-ch----------H--HHHHHH---Hhc
Confidence 444321 111222222 222 2478999999999999999742 110 00 1 111111 111
Q ss_pred h--hccceeechhhhhhcccccCCCCCHHHHHHHHHHHH
Q 029455 142 A--NANARVSLENIAVKLGHKDVSSLTPVTIAIEALEQI 178 (193)
Q Consensus 142 ~--~~~~~i~~~~~~~~~~~iDt~~~~~~~~~~~i~~~~ 178 (193)
. ..++ +|||+..+++++++.|++.+
T Consensus 148 ~~~~~dl------------~iDts~~s~~e~a~~i~~~l 174 (175)
T cd00227 148 AGVEYDL------------EVDTTHKTPIECARAIAARV 174 (175)
T ss_pred CCCcceE------------EEECCCCCHHHHHHHHHHhc
Confidence 1 1233 46999999999999998765
No 76
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=99.27 E-value=3.8e-11 Score=88.37 Aligned_cols=100 Identities=32% Similarity=0.393 Sum_probs=61.8
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHHHH-----HhCCCCHHHHHHHhcchhhHHHHHHHHHHHh-ccCCcEEEeCCce
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQ-----SVDGTSVAEIFKLYGEGFFREKETEVLQKLS-LMRQLVVSTGGGA 74 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~~~-----~~~g~~~~~~~~~~~~~~~~~~e~~~~~~l~-~~~~~vi~~g~~~ 74 (193)
+|||||||+|+.|++.+++.+++.|.+... +..|.+..+ ...+.++..+.......+. ....+|+.++.
T Consensus 7 ~~GsGKST~a~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~vVid~~~-- 81 (150)
T cd02021 7 VSGSGKSTVGKALAERLGAPFIDGDDLHPPANIAKMAAGIPLND---EDRWPWLQALTDALLAKLASAGEGVVVACSA-- 81 (150)
T ss_pred CCCCCHHHHHHHHHhhcCCEEEeCcccccHHHHHHHHcCCCCCc---cchhhHHHHHHHHHHHHHHhCCCCEEEEecc--
Confidence 699999999999999999999999998753 222322111 1122333333333333332 33456665442
Q ss_pred eeCHhhHHhcc------CCeEEEEECCHHHHHHHHhcc
Q 029455 75 VTRPINWRYMQ------KGISVWLDVPLEALAQRIAAV 106 (193)
Q Consensus 75 v~~~~~~~~l~------~~~vV~L~~~~~~~~~Rl~~~ 106 (193)
.....+..+. ...+|||.||++++.+|+..|
T Consensus 82 -~~~~~r~~~~~~~~~~~~~~v~l~~~~~~~~~R~~~R 118 (150)
T cd02021 82 -LKRIYRDILRGGAANPRVRFVHLDGPREVLAERLAAR 118 (150)
T ss_pred -ccHHHHHHHHhcCCCCCEEEEEEECCHHHHHHHHHhc
Confidence 2233332222 136999999999999999874
No 77
>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]
Probab=99.26 E-value=2.2e-10 Score=86.93 Aligned_cols=148 Identities=19% Similarity=0.238 Sum_probs=85.3
Q ss_pred CCCchHHHHHHHHHhcCCcEeechHHHHHHh-CCCC-HHHHHHHhcchh----------------hH-------------
Q 029455 2 MGSGKTTVGKILSGVLGYSFFDCDTLIEQSV-DGTS-VAEIFKLYGEGF----------------FR------------- 50 (193)
Q Consensus 2 ~GsGKSTia~~La~~lg~~~~d~d~~~~~~~-~g~~-~~~~~~~~~~~~----------------~~------------- 50 (193)
.||||||+++.+. ++|++++|+|.+.++.. +|.+ ...+.+.+|.+. |.
T Consensus 10 iatGKStVs~~f~-~~G~~vIDaD~vaR~vv~PG~p~~~~ive~FG~eiLl~~G~inR~~LG~~vF~~~~~r~~Ln~Ith 88 (225)
T KOG3220|consen 10 IATGKSTVSQVFK-ALGIPVIDADVVAREVVEPGTPAYRRIVEAFGTEILLEDGEINRKVLGKRVFSDPKKRQALNKITH 88 (225)
T ss_pred cccChHHHHHHHH-HcCCcEecHHHHHHHHhcCCChHHHHHHHHhCceeeccCCcccHHHHhHHHhCCHHHHHHHHhccc
Confidence 5899999999995 89999999999998876 3433 334444444431 21
Q ss_pred -HHHHHHHHH----HhccCCcEEEeCCceeeCHhhHHhccC-CeEEEEECCHHHHHHHHhccCCCCCCccccCCCCChhH
Q 029455 51 -EKETEVLQK----LSLMRQLVVSTGGGAVTRPINWRYMQK-GISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYT 124 (193)
Q Consensus 51 -~~e~~~~~~----l~~~~~~vi~~g~~~v~~~~~~~~l~~-~~vV~L~~~~~~~~~Rl~~~~~~~R~~~~~~~~~~~~~ 124 (193)
.+...++++ +....++++.. +++-.+. ..++- +.+|.+.||.+..++|+.+ |+..++ .
T Consensus 89 P~Ir~em~ke~~~~~l~G~r~ivlD---iPLLFE~-~~~~~~~~tvvV~cd~~~Ql~Rl~~-----Rd~lse---~---- 152 (225)
T KOG3220|consen 89 PAIRKEMFKEILKLLLRGYRVIVLD---IPLLFEA-KLLKICHKTVVVTCDEELQLERLVE-----RDELSE---E---- 152 (225)
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEe---chHHHHH-hHHhheeeEEEEEECcHHHHHHHHH-----hccccH---H----
Confidence 111112222 22233444432 3333332 12221 6789999999999999997 443332 1
Q ss_pred HHHHHHHHHHHHHHHHHhhccceeechhhhhhcccccCCCCCHHHHHHHHHHHHHh
Q 029455 125 EALNRLSTLWEERGEAYANANARVSLENIAVKLGHKDVSSLTPVTIAIEALEQIEG 180 (193)
Q Consensus 125 ~~~~~~~~~~~~r~~~y~~~~~~i~~~~~~~~~~~iDt~~~~~~~~~~~i~~~~~~ 180 (193)
.+..++..++- -....+.++.+| |+ +.+++++.+.|...+..
T Consensus 153 dAe~Rl~sQmp-~~~k~~~a~~Vi------------~N-ng~~~~l~~qv~~v~~~ 194 (225)
T KOG3220|consen 153 DAENRLQSQMP-LEKKCELADVVI------------DN-NGSLEDLYEQVEKVLAL 194 (225)
T ss_pred HHHHHHHhcCC-HHHHHHhhheee------------cC-CCChHHHHHHHHHHHHH
Confidence 23344433221 112233467776 53 67888888877665543
No 78
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.26 E-value=1.4e-10 Score=105.09 Aligned_cols=82 Identities=15% Similarity=0.060 Sum_probs=50.5
Q ss_pred CeEEEEECCHHHHHHHHhccCCCCCCccccCCCCChhHHHHHHHHHHHHHHHHHHhhccceeechhhhhhcccccCCCCC
Q 029455 87 GISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVSLENIAVKLGHKDVSSLT 166 (193)
Q Consensus 87 ~~vV~L~~~~~~~~~Rl~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~r~~~y~~~~~~i~~~~~~~~~~~iDt~~~~ 166 (193)
++.|||+|+++++.+|...+. .. . .|++.++.+.+.-. +. ....+.+. .++-.++|||+.++
T Consensus 156 ~~K~~l~A~~~~Ra~Rr~~~~---~~--~------~~~~~~~~~~~Rd~-~d-~R~~~pl~-----~~~da~~idts~~~ 217 (712)
T PRK09518 156 EVRILLTAREEVRQARRSGQD---RS--E------TPGVVLEDVAARDE-AD-SKVTSFLS-----AADGVTTLDNSDLD 217 (712)
T ss_pred CeEEEEECCHHHHHHHHHHhh---hc--C------CHHHHHHHHHHHhh-hc-ccccCCCC-----CCCCeEEEECCCCC
Confidence 689999999999999998631 11 1 13233444322211 11 11111111 12222458999999
Q ss_pred HHHHHHHHHHHHHhhhcccc
Q 029455 167 PVTIAIEALEQIEGFLKEED 186 (193)
Q Consensus 167 ~~~~~~~i~~~~~~~~~~~~ 186 (193)
++++++.|...+++.+..+.
T Consensus 218 ~~~v~~~i~~~i~~~~~~~~ 237 (712)
T PRK09518 218 FDETLDLLIGLVEDAIEEQE 237 (712)
T ss_pred HHHHHHHHHHHHHhhhhhhh
Confidence 99999999999988886654
No 79
>PRK14529 adenylate kinase; Provisional
Probab=99.25 E-value=4.4e-10 Score=88.11 Aligned_cols=102 Identities=17% Similarity=0.220 Sum_probs=64.2
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHHHHHhC-CC----CHHHHHHHhcchhhHHHHHHHHH-HHhc--cCCcEEEeCC
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVD-GT----SVAEIFKLYGEGFFREKETEVLQ-KLSL--MRQLVVSTGG 72 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~~~~~~-g~----~~~~~~~~~~~~~~~~~e~~~~~-~l~~--~~~~vi~~g~ 72 (193)
||||||||+|+.|++++++++++.++++++... +. .+.+++ ..|....-++-..++. .+.. ..++|++ |
T Consensus 8 ~PGsGK~T~a~~La~~~~~~~is~gdllr~~i~~~t~lg~~i~~~i-~~G~lvpdei~~~lv~~~l~~~~~~g~iLD-G- 84 (223)
T PRK14529 8 PNGSGKGTQGALVKKKYDLAHIESGAIFREHIGGGTELGKKAKEYI-DRGDLVPDDITIPMILETLKQDGKNGWLLD-G- 84 (223)
T ss_pred CCCCCHHHHHHHHHHHHCCCCcccchhhhhhccCCChHHHHHHHHH-hccCcchHHHHHHHHHHHHhccCCCcEEEe-C-
Confidence 799999999999999999999999999887542 22 233333 2343333333333332 2322 2334443 4
Q ss_pred ceeeCHhhHH----hcc-----CCeEEEEECCHHHHHHHHhcc
Q 029455 73 GAVTRPINWR----YMQ-----KGISVWLDVPLEALAQRIAAV 106 (193)
Q Consensus 73 ~~v~~~~~~~----~l~-----~~~vV~L~~~~~~~~~Rl~~~ 106 (193)
++....... .+. .+.+|+|++|.+++++|+..|
T Consensus 85 -fPRt~~Qa~~l~~~l~~~~~~~~~vi~l~~~~~~l~~Rl~~R 126 (223)
T PRK14529 85 -FPRNKVQAEKLWEALQKEGMKLDYVIEILLPREVAKNRIMGR 126 (223)
T ss_pred -CCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHhhCC
Confidence 443322211 121 268999999999999999976
No 80
>PRK06547 hypothetical protein; Provisional
Probab=99.24 E-value=7.1e-12 Score=94.68 Aligned_cols=104 Identities=25% Similarity=0.252 Sum_probs=62.0
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHHHHHhCCCC-----HHHHHHHhcchhhHHHH--HHHHHH--HhccCCcEEEeC
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTS-----VAEIFKLYGEGFFREKE--TEVLQK--LSLMRQLVVSTG 71 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~~~~~~g~~-----~~~~~~~~~~~~~~~~e--~~~~~~--l~~~~~~vi~~g 71 (193)
+|||||||+++.|++.+++++++.|+++.... +.+ +.+.+...|...+.... ...... .....+.||..|
T Consensus 23 ~~GsGKTt~a~~l~~~~~~~~~~~d~~~~~~~-~~~~~~~~l~~~~l~~g~~~~~~yd~~~~~~~~~~~l~~~~vVIvEG 101 (172)
T PRK06547 23 RSGSGKTTLAGALAARTGFQLVHLDDLYPGWH-GLAAASEHVAEAVLDEGRPGRWRWDWANNRPGDWVSVEPGRRLIIEG 101 (172)
T ss_pred CCCCCHHHHHHHHHHHhCCCeecccceecccc-cCChHHHHHHHHHHhCCCCceecCCCCCCCCCCcEEeCCCCeEEEEe
Confidence 68999999999999999999999999875432 322 11111112211111000 000000 111234566667
Q ss_pred CceeeCHhhHHhcc-CC--eEEEEECCHHHHHHHHhcc
Q 029455 72 GGAVTRPINWRYMQ-KG--ISVWLDVPLEALAQRIAAV 106 (193)
Q Consensus 72 ~~~v~~~~~~~~l~-~~--~vV~L~~~~~~~~~Rl~~~ 106 (193)
.+.+ .+..+..+. .. ++|||++|.+++.+|+.+|
T Consensus 102 ~~al-~~~~r~~~d~~g~v~~I~ld~~~~vr~~R~~~R 138 (172)
T PRK06547 102 VGSL-TAANVALASLLGEVLTVWLDGPEALRKERALAR 138 (172)
T ss_pred hhhc-cHHHHHHhccCCCEEEEEEECCHHHHHHHHHhc
Confidence 5544 455554443 22 8999999999999999985
No 81
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=99.22 E-value=1.2e-09 Score=84.97 Aligned_cols=31 Identities=32% Similarity=0.614 Sum_probs=27.5
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHHHHHh
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQSV 32 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~~~~~ 32 (193)
++||||||+++.|++ +|++++|+|.+.++.+
T Consensus 13 ~igsGKSt~~~~l~~-~g~~v~d~D~i~~~~~ 43 (208)
T PRK14731 13 GIGSGKSTVCRFLAE-MGCELFEADRVAKELQ 43 (208)
T ss_pred CCCCCHHHHHHHHHH-CCCeEEeccHHHHHHc
Confidence 589999999999986 9999999998877654
No 82
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=99.22 E-value=5.9e-10 Score=84.51 Aligned_cols=152 Identities=14% Similarity=0.213 Sum_probs=83.3
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHHHH-----HhCCCCHHHHHHHhcchhhHHHHHHHHHHHhccCCcEEEeCCcee
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQ-----SVDGTSVAEIFKLYGEGFFREKETEVLQKLSLMRQLVVSTGGGAV 75 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~~~-----~~~g~~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~vi~~g~~~v 75 (193)
++||||||+++.|+..++..+++.|.+... ...|....+ .....+...+...+...+......+|.++ .
T Consensus 11 ~sGsGKSTl~~~la~~l~~~~i~gd~~~~~~~~r~~~~g~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~iv~s---~ 84 (176)
T PRK09825 11 VSGSGKSLIGSKIAALFSAKFIDGDDLHPAKNIDKMSQGIPLTD---EDRLPWLERLNDASYSLYKKNETGFIVCS---S 84 (176)
T ss_pred CCCCCHHHHHHHHHHhcCCEEECCcccCCHhHHHHHhcCCCCCc---ccchHHHHHHHHHHHHHHhcCCCEEEEEE---e
Confidence 689999999999999999999999985421 111333221 01111111221111111111122233333 2
Q ss_pred eCHhhHHhccC----CeEEEEECCHHHHHHHHhccCCCCCCccccCCCCChhHHHHHHHHHHHHHHHHHHhh-ccceeec
Q 029455 76 TRPINWRYMQK----GISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYAN-ANARVSL 150 (193)
Q Consensus 76 ~~~~~~~~l~~----~~vV~L~~~~~~~~~Rl~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~r~~~y~~-~~~~i~~ 150 (193)
+....++.++. ..+|||+||++++.+|+.+|. .... . .+-+...+....+.... .+ ++
T Consensus 85 ~~~~~R~~~r~~~~~~~~v~l~a~~~~l~~Rl~~R~---~~~~-~----------~~vl~~Q~~~~e~~~~~e~~-~~-- 147 (176)
T PRK09825 85 LKKQYRDILRKSSPNVHFLWLDGDYETILARMQRRA---GHFM-P----------PDLLQSQFDALERPCADEHD-IA-- 147 (176)
T ss_pred cCHHHHHHHHhhCCCEEEEEEeCCHHHHHHHHhccc---CCCC-C----------HHHHHHHHHHcCCCCCCcCC-eE--
Confidence 34444444432 378999999999999998752 1111 1 23343333221221111 23 22
Q ss_pred hhhhhhcccccCCCCCHHHHHHHHHHHHHhhhcc
Q 029455 151 ENIAVKLGHKDVSSLTPVTIAIEALEQIEGFLKE 184 (193)
Q Consensus 151 ~~~~~~~~~iDt~~~~~~~~~~~i~~~~~~~~~~ 184 (193)
.||++ .+++++++.+...+......
T Consensus 148 --------~~d~~-~~~~~~~~~~~~~~~~~~~~ 172 (176)
T PRK09825 148 --------RIDVN-HDIENVTEQCRQAVQAFRQA 172 (176)
T ss_pred --------EEECC-CCHHHHHHHHHHHHHHHHhc
Confidence 47874 78999999999998776544
No 83
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=99.19 E-value=3.7e-10 Score=91.76 Aligned_cols=73 Identities=22% Similarity=0.252 Sum_probs=51.2
Q ss_pred eEEEEECCHHHHHHHHhccCCCCCCccccCCCCChhHHHHHHHHHHHHHHHHHHhhccceeechhhhhhcccccCCCCCH
Q 029455 88 ISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVSLENIAVKLGHKDVSSLTP 167 (193)
Q Consensus 88 ~vV~L~~~~~~~~~Rl~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~r~~~y~~~~~~i~~~~~~~~~~~iDt~~~~~ 167 (193)
.+|||+++++++.+|+... .+.||+... .. ..+.+.+....+.+.|+.||.+| ||+++++
T Consensus 88 ~iI~L~a~~e~L~~Rl~~~-rr~RPLl~~---~~----l~e~I~~eR~~l~pl~~~ADivI------------DTs~ls~ 147 (288)
T PRK05416 88 RVLFLDASDEVLIRRYSET-RRRHPLSGD---GS----LLEGIELERELLAPLRERADLVI------------DTSELSV 147 (288)
T ss_pred EEEEEECCHHHHHHHHhhc-ccCCCccCC---cc----HHHHHHHHHhhhhhHHHhCCEEE------------ECCCCCH
Confidence 6799999999999999752 246887643 11 12333333223345566688775 8999999
Q ss_pred HHHHHHHHHHHHh
Q 029455 168 VTIAIEALEQIEG 180 (193)
Q Consensus 168 ~~~~~~i~~~~~~ 180 (193)
+++++.|.+.+..
T Consensus 148 ~el~e~I~~~l~~ 160 (288)
T PRK05416 148 HQLRERIRERFGG 160 (288)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999998854
No 84
>PRK08118 topology modulation protein; Reviewed
Probab=99.19 E-value=1.1e-10 Score=87.85 Aligned_cols=89 Identities=19% Similarity=0.208 Sum_probs=58.8
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHHHHHhCCCCHHHHHHHhcchhhHHHHHHHHHHHhccCCcEEEeCCceeeCHhh
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFREKETEVLQKLSLMRQLVVSTGGGAVTRPIN 80 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~~~~~~g~~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~vi~~g~~~v~~~~~ 80 (193)
+|||||||+|+.|++.+|+++++.|.+++.. |.. ... .+....++..+....++|+. |... ..
T Consensus 9 ~~GsGKSTlak~L~~~l~~~~~~lD~l~~~~--~w~------~~~----~~~~~~~~~~~~~~~~wVid-G~~~----~~ 71 (167)
T PRK08118 9 SGGSGKSTLARQLGEKLNIPVHHLDALFWKP--NWE------GVP----KEEQITVQNELVKEDEWIID-GNYG----GT 71 (167)
T ss_pred CCCCCHHHHHHHHHHHhCCCceecchhhccc--CCc------CCC----HHHHHHHHHHHhcCCCEEEe-CCcc----hH
Confidence 6999999999999999999999999987542 211 000 01112234444545566664 5211 11
Q ss_pred H-Hhcc-CCeEEEEECCHHHHHHHHhcc
Q 029455 81 W-RYMQ-KGISVWLDVPLEALAQRIAAV 106 (193)
Q Consensus 81 ~-~~l~-~~~vV~L~~~~~~~~~Rl~~~ 106 (193)
. ..+. .+.+|||++|.+++..|+.+|
T Consensus 72 ~~~~l~~~d~vi~Ld~p~~~~~~R~~~R 99 (167)
T PRK08118 72 MDIRLNAADTIIFLDIPRTICLYRAFKR 99 (167)
T ss_pred HHHHHHhCCEEEEEeCCHHHHHHHHHHH
Confidence 1 1223 389999999999999999876
No 85
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=99.17 E-value=5.2e-09 Score=77.48 Aligned_cols=159 Identities=23% Similarity=0.214 Sum_probs=95.6
Q ss_pred CCCCchHHHHHHHHHhc-CCcEeechHHHHHHh--CCC--CHHHHHHHhcchhhHHHHHHHHHHHhccCC-cEEEeC---
Q 029455 1 MMGSGKTTVGKILSGVL-GYSFFDCDTLIEQSV--DGT--SVAEIFKLYGEGFFREKETEVLQKLSLMRQ-LVVSTG--- 71 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l-g~~~~d~d~~~~~~~--~g~--~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~-~vi~~g--- 71 (193)
.||+||||+.+.+.+.+ +..+++.+++.-+.+ .|. ..++++ ....+..+.++..+.+++..... .+++++
T Consensus 12 VpGvGKTTVl~~~~~~l~~~~ivNyG~~Mle~A~k~glve~rD~~R-klp~e~Q~~lq~~Aa~rI~~~~~~iivDtH~~I 90 (189)
T COG2019 12 VPGVGKTTVLKIALKELVKHKIVNYGDLMLEIAKKKGLVEHRDEMR-KLPLENQRELQAEAAKRIAEMALEIIVDTHATI 90 (189)
T ss_pred CCCCChHHHHHHHHHHHhhceeeeHhHHHHHHHHHhCCcccHHHHh-cCCHHHHHHHHHHHHHHHHHhhhceEEecccee
Confidence 38999999999999999 888899888876544 132 223333 22334445555555555554333 555554
Q ss_pred ---CceeeC-Hh-hHHhccCCeEEEEECCHHHHHHHHhccCCCCCCccccCCCCChhHHHHHHHHHHHH-HHHHHHhhc-
Q 029455 72 ---GGAVTR-PI-NWRYMQKGISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWE-ERGEAYANA- 144 (193)
Q Consensus 72 ---~~~v~~-~~-~~~~l~~~~vV~L~~~~~~~~~Rl~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~-~r~~~y~~~- 144 (193)
.|++.. |. ....+.++.+|.|.+++++++.|-.++.++.|+..+. +.++++.+ .|...+.++
T Consensus 91 kTP~GylpgLP~~Vl~~l~pd~ivllEaDp~~Il~RR~~D~~r~Rd~es~-----------e~i~eHqe~nR~aA~a~A~ 159 (189)
T COG2019 91 KTPAGYLPGLPSWVLEELNPDVIVLLEADPEEILERRLRDSRRDRDVESV-----------EEIREHQEMNRAAAMAYAI 159 (189)
T ss_pred cCCCccCCCCcHHHHHhcCCCEEEEEeCCHHHHHHHHhcccccccccccH-----------HHHHHHHHHHHHHHHHHHH
Confidence 233332 32 2345667899999999999888887754455654332 34443321 233333321
Q ss_pred --cceeechhhhhhcccccCCCCCHHHHHHHHHHHHHh
Q 029455 145 --NARVSLENIAVKLGHKDVSSLTPVTIAIEALEQIEG 180 (193)
Q Consensus 145 --~~~i~~~~~~~~~~~iDt~~~~~~~~~~~i~~~~~~ 180 (193)
...+. +|.+....+++.+.+|...+..
T Consensus 160 ~~gatVk---------IV~n~~~~~e~Aa~eiv~~l~~ 188 (189)
T COG2019 160 LLGATVK---------IVENHEGDPEEAAEEIVELLDR 188 (189)
T ss_pred HhCCeEE---------EEeCCCCCHHHHHHHHHHHHhc
Confidence 12211 2555678899999999988753
No 86
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=99.16 E-value=5.8e-10 Score=84.71 Aligned_cols=31 Identities=39% Similarity=0.626 Sum_probs=28.7
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHHHHHh
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQSV 32 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~~~~~ 32 (193)
+|||||||+++.|++ +|++++++|.+.++.+
T Consensus 7 ~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~ 37 (179)
T cd02022 7 GIGSGKSTVAKLLKE-LGIPVIDADKIAHEVY 37 (179)
T ss_pred CCCCCHHHHHHHHHH-CCCCEEecCHHHHhhh
Confidence 589999999999998 9999999999998765
No 87
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=99.16 E-value=9.8e-10 Score=87.65 Aligned_cols=148 Identities=22% Similarity=0.229 Sum_probs=79.0
Q ss_pred CCCCchHHHHHHHHHhcC---C--cEeechHHHHHHhCCCCHHHHHHHhcchhhHHHHHHHHHHHhccCCcEEEeCCcee
Q 029455 1 MMGSGKTTVGKILSGVLG---Y--SFFDCDTLIEQSVDGTSVAEIFKLYGEGFFREKETEVLQKLSLMRQLVVSTGGGAV 75 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg---~--~~~d~d~~~~~~~~g~~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~vi~~g~~~v 75 (193)
+|||||||+|+.|++.++ + .+++.|.+..... . +...+...++......+...+..+..||..+....
T Consensus 7 ~pGSGKST~a~~La~~l~~~~~~v~~i~~D~lr~~~~-~------~~~~~e~~~~~~~~~~i~~~l~~~~~VI~D~~~~~ 79 (249)
T TIGR03574 7 LPGVGKSTFSKELAKKLSEKNIDVIILGTDLIRESFP-V------WKEKYEEFIRDSTLYLIKTALKNKYSVIVDDTNYY 79 (249)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCceEEEccHHHHHHhH-H------hhHHhHHHHHHHHHHHHHHHHhCCCeEEEeccchH
Confidence 699999999999999873 3 4566666543221 0 11112222333333344555444555665553211
Q ss_pred e--CHhhHHhcc----CCeEEEEECCHHHHHHHHhccCCCCCCccccCCCCChhHHHHHHHHHHHHHHHH---HH--hhc
Q 029455 76 T--RPINWRYMQ----KGISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGE---AY--ANA 144 (193)
Q Consensus 76 ~--~~~~~~~l~----~~~vV~L~~~~~~~~~Rl~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~r~~---~y--~~~ 144 (193)
- ..+.....+ ...+|||.+|.+++.+|...|+ ++. . .+.+..++..... .| +.+
T Consensus 80 ~~~r~~l~~~ak~~~~~~~~I~l~~p~e~~~~Rn~~R~---~~~-~-----------~~~i~~l~~r~e~p~~~~~wd~~ 144 (249)
T TIGR03574 80 NSMRRDLINIAKEYNKNYIIIYLKAPLDTLLRRNIERG---EKI-P-----------NEVIKDMYEKFDEPGTKYSWDLP 144 (249)
T ss_pred HHHHHHHHHHHHhCCCCEEEEEecCCHHHHHHHHHhCC---CCC-C-----------HHHHHHHHHhhCCCCCCCCccCc
Confidence 1 011112222 1378999999999999998632 211 0 1223333322111 11 112
Q ss_pred cceeechhhhhhcccccCCC-CCHHHHHHHHHHHHHhhh
Q 029455 145 NARVSLENIAVKLGHKDVSS-LTPVTIAIEALEQIEGFL 182 (193)
Q Consensus 145 ~~~i~~~~~~~~~~~iDt~~-~~~~~~~~~i~~~~~~~~ 182 (193)
++ +||++. .+++++++.|.+.+...+
T Consensus 145 ~~------------~vd~~~~~~~~ei~~~i~~~~~~~~ 171 (249)
T TIGR03574 145 DL------------TIDTTKKIDYNEILEEILEISENKL 171 (249)
T ss_pred eE------------EecCCCCCCHHHHHHHHHHHhhccC
Confidence 33 357654 578999999988775433
No 88
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=99.16 E-value=4.7e-10 Score=84.93 Aligned_cols=89 Identities=22% Similarity=0.196 Sum_probs=53.6
Q ss_pred ccCCcEEEeCCceeeCHhhHHhccCCeEEEEECCHHHHHHHHhccCCCCCCccccCCCCChhHHHHHHHHHHHHHHHHHH
Q 029455 62 LMRQLVVSTGGGAVTRPINWRYMQKGISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAY 141 (193)
Q Consensus 62 ~~~~~vi~~g~~~v~~~~~~~~l~~~~vV~L~~~~~~~~~Rl~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~r~~~y 141 (193)
..+..|+.++.+... ...+..+....+|||++|.+++.+|+..| .|+. .+.+...+ .+.+.|
T Consensus 88 ~~g~~vv~~g~~~~~-~~~~~~~~~~~~i~l~~~~~~~~~Rl~~R---~~~~-------------~~~~~~rl-~~~~~~ 149 (179)
T TIGR02322 88 EAGDVVVVNGSRAVL-PEARQRYPNLLVVNITASPDVLAQRLAAR---GRES-------------REEIEERL-ARSARF 149 (179)
T ss_pred hcCCEEEEECCHHHH-HHHHHHCCCcEEEEEECCHHHHHHHHHHc---CCCC-------------HHHHHHHH-HHHhhc
Confidence 344556666643322 22233333468999999999999999974 2332 12233333 244555
Q ss_pred h--hccceeechhhhhhcccccCCCCCHHHHHHHHHHHHHh
Q 029455 142 A--NANARVSLENIAVKLGHKDVSSLTPVTIAIEALEQIEG 180 (193)
Q Consensus 142 ~--~~~~~i~~~~~~~~~~~iDt~~~~~~~~~~~i~~~~~~ 180 (193)
. .++.++ ||+ +.+++++++.|.+.+.+
T Consensus 150 ~~~~~~~~v-----------i~~-~~~~ee~~~~i~~~l~~ 178 (179)
T TIGR02322 150 AAAPADVTT-----------IDN-SGSLEVAGETLLRLLRK 178 (179)
T ss_pred ccccCCEEE-----------EeC-CCCHHHHHHHHHHHHcc
Confidence 4 355553 454 57999999999988753
No 89
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=99.16 E-value=1e-10 Score=89.08 Aligned_cols=146 Identities=19% Similarity=0.191 Sum_probs=79.3
Q ss_pred CCCCchHHHHHHHHHhc---C--CcEeechHHHHHHhCCCCHHHHHHHhcchhhHHHHHHHHHHHhccCCcEEEeCCcee
Q 029455 1 MMGSGKTTVGKILSGVL---G--YSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFREKETEVLQKLSLMRQLVVSTGGGAV 75 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l---g--~~~~d~d~~~~~~~~g~~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~vi~~g~~~v 75 (193)
+|||||||+++.|+..+ | ..+++.|.+.+.+..+.... .......++.+ ..+...+...+..||.+. ..
T Consensus 26 ~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~r~~l~~~~~~~---~~~~~~~~~~~-~~~~~~~~~~G~~VI~d~--~~ 99 (184)
T TIGR00455 26 LSGSGKSTIANALEKKLESKGYRVYVLDGDNVRHGLNKDLGFS---EEDRKENIRRI-GEVAKLFVRNGIIVITSF--IS 99 (184)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCcEEEECChHHHhhhccccCCC---HHHHHHHHHHH-HHHHHHHHcCCCEEEEec--CC
Confidence 58999999999999887 2 56788888765443111110 01112223332 122333444455555443 22
Q ss_pred eCHhhHHhc----cC--CeEEEEECCHHHHHHHHhccCCCCCCccccCCCCChhHHHHHHHHHHHHHHHHHHh--hccce
Q 029455 76 TRPINWRYM----QK--GISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYA--NANAR 147 (193)
Q Consensus 76 ~~~~~~~~l----~~--~~vV~L~~~~~~~~~Rl~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~r~~~y~--~~~~~ 147 (193)
.....+..+ +. ..+|||+||.+++.+|.. +++....+ ...+..+...+.+.|. .++++
T Consensus 100 ~~~~~r~~~~~~~~~~~~~~v~l~~~~e~~~~R~~------~~l~~~~~--------~~~~~~l~~~~~~y~~p~~adl~ 165 (184)
T TIGR00455 100 PYRADRQMVRELIEKGEFIEVFVDCPLEVCEQRDP------KGLYKKAR--------NGEIKGFTGIDSPYEAPENPEVV 165 (184)
T ss_pred CCHHHHHHHHHhCcCCCeEEEEEeCCHHHHHHhCc------hhHHHHHh--------cCCccCcccccCCCCCCCCCcEE
Confidence 223333322 22 367999999999999932 23221100 0112222222333332 25555
Q ss_pred eechhhhhhcccccCCCCCHHHHHHHHHHHH
Q 029455 148 VSLENIAVKLGHKDVSSLTPVTIAIEALEQI 178 (193)
Q Consensus 148 i~~~~~~~~~~~iDt~~~~~~~~~~~i~~~~ 178 (193)
|||++.++++++++|++++
T Consensus 166 ------------Idt~~~~~~~~~~~i~~~l 184 (184)
T TIGR00455 166 ------------LDTDQNDREECVGQIIEKL 184 (184)
T ss_pred ------------EECCCCCHHHHHHHHHHhC
Confidence 5888899999999988753
No 90
>PF13189 Cytidylate_kin2: Cytidylate kinase-like family; PDB: 3FDI_A.
Probab=99.15 E-value=2.3e-10 Score=87.03 Aligned_cols=140 Identities=19% Similarity=0.274 Sum_probs=77.4
Q ss_pred CCCchHHHHHHHHHhcCCcEeechHHHHHHhC--CCCHHH------------HHHHh-------------cchhhHHHHH
Q 029455 2 MGSGKTTVGKILSGVLGYSFFDCDTLIEQSVD--GTSVAE------------IFKLY-------------GEGFFREKET 54 (193)
Q Consensus 2 ~GsGKSTia~~La~~lg~~~~d~d~~~~~~~~--g~~~~~------------~~~~~-------------~~~~~~~~e~ 54 (193)
.|||++|||+.||++||++++|. +++.+.++ |.+... ++... ....+.....
T Consensus 8 ~Gsgg~~Ia~~LA~~Lg~~~~d~-~ii~~~a~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (179)
T PF13189_consen 8 YGSGGREIAERLAEKLGYPYYDR-EIIEEAAKESGISEEEFEEFDEKKPFNSFLYDFFRGMFPGSFEDHPDDDKIFRAQS 86 (179)
T ss_dssp TTSSHHHHHHHHHHHCT--EE-H-HHHHHCT------------SS-HHH--HH---HHS--------------HHHHHHH
T ss_pred CCCChHHHHHHHHHHcCCccCCH-HHHHHHHHHccCCHHHHHHHhccccCcchhhhhhccccccccccccHHHHHHHHHH
Confidence 69999999999999999999999 44544331 222111 10000 0111222334
Q ss_pred HHHHHHhccCCcEEEeCCceeeCHhhHHhcc---CCeEEEEECCHHHHHHHHhccCCCCCCccccCCCCChhHHHHHHHH
Q 029455 55 EVLQKLSLMRQLVVSTGGGAVTRPINWRYMQ---KGISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLS 131 (193)
Q Consensus 55 ~~~~~l~~~~~~vi~~g~~~v~~~~~~~~l~---~~~vV~L~~~~~~~~~Rl~~~~~~~R~~~~~~~~~~~~~~~~~~~~ 131 (193)
.++.++...+++||...++. + .|+ +.+-|||.+|.+.+++|++++ .+... +++.+.+.
T Consensus 87 ~~i~~la~~~~~Vi~GR~a~------~-il~~~~~~l~V~i~A~~~~Rv~ri~~~----~~~s~--------~~A~~~i~ 147 (179)
T PF13189_consen 87 EIIRELAAKGNCVIVGRCAN------Y-ILRDIPNVLHVFIYAPLEFRVERIMER----EGISE--------EEAEKLIK 147 (179)
T ss_dssp HHHHHHHH---EEEESTTHH------H-HTTT-TTEEEEEEEE-HHHHHHHHHHH----HT--H--------HHHHHHHH
T ss_pred HHHHHHhccCCEEEEecCHh------h-hhCCCCCeEEEEEECCHHHHHHHHHHH----cCCCH--------HHHHHHHH
Confidence 56666766677877632211 1 233 248999999999999999974 12211 14566677
Q ss_pred HHHHHHHHHHhh-ccceeechhhhhhcccccCC
Q 029455 132 TLWEERGEAYAN-ANARVSLENIAVKLGHKDVS 163 (193)
Q Consensus 132 ~~~~~r~~~y~~-~~~~i~~~~~~~~~~~iDt~ 163 (193)
+.-..|...|.. .+.. | .+...|+++|||+
T Consensus 148 ~~D~~R~~~~~~~~~~~-~-~d~~~YDLvint~ 178 (179)
T PF13189_consen 148 KEDKRRRAYYKYYTGID-W-GDPSNYDLVINTS 178 (179)
T ss_dssp HHHHHHHHHHHHH-SS--T-TBGGG-SEEEEES
T ss_pred HHHHHHHHHHHHHhCCC-C-CCchhceEEEeCc
Confidence 777777777776 3332 2 4678999999986
No 91
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=99.15 E-value=4.1e-09 Score=80.01 Aligned_cols=154 Identities=18% Similarity=0.260 Sum_probs=83.3
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHHHHHhC-C----CCHHHHHHHhcchhhHHHHHHHH-HHHhcc--CCcEEEeCC
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVD-G----TSVAEIFKLYGEGFFREKETEVL-QKLSLM--RQLVVSTGG 72 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~~~~~~-g----~~~~~~~~~~~~~~~~~~e~~~~-~~l~~~--~~~vi~~g~ 72 (193)
+|||||||+|+.|++++|++++|++++++.... + ..+..++.. |....-.+-...+ ..+... ...+|..|.
T Consensus 8 ~pGaGK~T~A~~La~~~~i~hlstgd~~r~~~~~~t~lg~~~k~~i~~-g~lv~d~i~~~~v~~rl~~~d~~~~~I~dg~ 86 (178)
T COG0563 8 PPGAGKSTLAKKLAKKLGLPHLDTGDILRAAIAERTELGEEIKKYIDK-GELVPDEIVNGLVKERLDEADCKAGFILDGF 86 (178)
T ss_pred CCCCCHHHHHHHHHHHhCCcEEcHhHHhHhhhccCChHHHHHHHHHHc-CCccchHHHHHHHHHHHHhhcccCeEEEeCC
Confidence 699999999999999999999999998876541 2 112222222 2211111111111 122221 123444442
Q ss_pred ce-eeCHhhHH-hcc----C-CeEEEEECCHHHHHHHHhccCCCCCCccccCCCCChhHHHHHHHHHHHHHHHHHHhh-c
Q 029455 73 GA-VTRPINWR-YMQ----K-GISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYAN-A 144 (193)
Q Consensus 73 ~~-v~~~~~~~-~l~----~-~~vV~L~~~~~~~~~Rl~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~r~~~y~~-~ 144 (193)
.. +....... .|. + +.++.+.++.+.++.|+..+. .|+ +|. .+.+ ..|...|.. .
T Consensus 87 PR~~~qa~~l~r~l~~~g~~~d~v~~~~~~~~~~~~r~~~r~--~r~-------dd~----~~~~----~~R~~~y~~~~ 149 (178)
T COG0563 87 PRTLCQARALKRLLKELGVRLDMVIELDVPEELLLERLLGRR--VRE-------DDN----EETV----KKRLKVYHEQT 149 (178)
T ss_pred CCcHHHHHHHHHHHHHcCCCcceEEeeeCCHHHHHHHHhCcc--ccc-------cCC----HHHH----HHHHHHHHhcc
Confidence 11 11111111 111 2 789999999999999998631 121 221 2233 233344553 4
Q ss_pred cceeechhhhhhcccccCCCCCHHHHHHHHHHHH
Q 029455 145 NARVSLENIAVKLGHKDVSSLTPVTIAIEALEQI 178 (193)
Q Consensus 145 ~~~i~~~~~~~~~~~iDt~~~~~~~~~~~i~~~~ 178 (193)
..++.+.. +.|| ...+++++.+.+.+.+
T Consensus 150 ~pli~~y~-----~~id-~~~~i~~v~~~i~~~l 177 (178)
T COG0563 150 APLIEYYS-----VTID-GSGEIEEVLADILKAL 177 (178)
T ss_pred cchhhhhe-----eecc-CCCCHHHHHHHHHHhh
Confidence 44443211 3467 4689999999887764
No 92
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=99.15 E-value=9.6e-10 Score=84.35 Aligned_cols=58 Identities=26% Similarity=0.373 Sum_probs=40.6
Q ss_pred CeEEEEECCHHHHHHHHhccCCCCCCccccCCCCChhHHHHHHHHHHHHHHHHHHhhc-cceee
Q 029455 87 GISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANA-NARVS 149 (193)
Q Consensus 87 ~~vV~L~~~~~~~~~Rl~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~r~~~y~~~-~~~i~ 149 (193)
+++|||+|+.+++.+|+.+| +|+..... .+.++...+.+...|..+...|..+ ++.|+
T Consensus 128 dllIyLd~~~e~~l~RI~~R---gR~~E~~~--~~~~~~Y~~~l~~~Y~~~~~~~~~~~~l~i~ 186 (216)
T COG1428 128 DLLIYLDASLETLLRRIAKR---GRPFEIDN--FDENKDYLKDLHRRYDDWFENYDACPVLGID 186 (216)
T ss_pred CEEEEEeCCHHHHHHHHHHh---CCCccccc--ccchHHHHHHHHHHHHHHHHhcccCCeeeec
Confidence 79999999999999999985 58876331 2221235777778888777666643 44443
No 93
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=99.14 E-value=2.7e-10 Score=86.63 Aligned_cols=31 Identities=42% Similarity=0.697 Sum_probs=27.6
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHHHHHh
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQSV 32 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~~~~~ 32 (193)
.+||||||+++.|++ +|++++|+|.+.++.+
T Consensus 8 ~igsGKStv~~~l~~-~G~~vidaD~i~~~l~ 38 (180)
T PF01121_consen 8 GIGSGKSTVSKILAE-LGFPVIDADEIAHELY 38 (180)
T ss_dssp STTSSHHHHHHHHHH-TT-EEEEHHHHHHHCT
T ss_pred CCcCCHHHHHHHHHH-CCCCEECccHHHHHHh
Confidence 479999999999987 9999999999998876
No 94
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=99.13 E-value=2.9e-10 Score=83.90 Aligned_cols=101 Identities=25% Similarity=0.346 Sum_probs=59.4
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHHHHHhCCCC-----HHHHHHHhcchhhHHHHHHHHH-HHhc---cCCcEEEeC
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTS-----VAEIFKLYGEGFFREKETEVLQ-KLSL---MRQLVVSTG 71 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~~~~~~g~~-----~~~~~~~~~~~~~~~~e~~~~~-~l~~---~~~~vi~~g 71 (193)
||||||||+|+.||+++|+.+++.+++++......+ +.+.+. .|......+-..++. .+.. ...+|+ .|
T Consensus 4 ~PgsGK~t~~~~la~~~~~~~is~~~llr~~~~~~s~~g~~i~~~l~-~g~~vp~~~v~~ll~~~l~~~~~~~g~il-dG 81 (151)
T PF00406_consen 4 PPGSGKGTQAKRLAKRYGLVHISVGDLLREEIKSDSELGKQIQEYLD-NGELVPDELVIELLKERLEQPPCNRGFIL-DG 81 (151)
T ss_dssp STTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHHTTSHHHHHHHHHHH-TTSS--HHHHHHHHHHHHHSGGTTTEEEE-ES
T ss_pred CCCCChHHHHHHHHHhcCcceechHHHHHHHHhhhhHHHHHHHHHHH-hhccchHHHHHHHHHHHHhhhcccceeee-ee
Confidence 799999999999999999999999999987642211 222222 233222222222222 2322 233444 44
Q ss_pred CceeeCHhhHHhc---------cCCeEEEEECCHHHHHHHHhc
Q 029455 72 GGAVTRPINWRYM---------QKGISVWLDVPLEALAQRIAA 105 (193)
Q Consensus 72 ~~~v~~~~~~~~l---------~~~~vV~L~~~~~~~~~Rl~~ 105 (193)
++........| ..+.+|+|+||.+++.+|+..
T Consensus 82 --fPrt~~Qa~~l~~~~~~~~~~~~~vi~L~~~~~~~~~R~~~ 122 (151)
T PF00406_consen 82 --FPRTLEQAEALEEILEEEGIPPDLVIFLDCPDETLIERLSQ 122 (151)
T ss_dssp --B-SSHHHHHHHHHHHHHTTSEESEEEEEE--HHHHHHHHHT
T ss_pred --ccccHHHHHHHHHHHhhcccchheeeccccchhhhhhhccc
Confidence 44443322111 126899999999999999984
No 95
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=99.10 E-value=5e-10 Score=81.42 Aligned_cols=102 Identities=23% Similarity=0.203 Sum_probs=59.3
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHHHHHhCCCCHHH--HHHHhcchhhHHHHHHHHHHHhccC-CcEEEeCCceeeC
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAE--IFKLYGEGFFREKETEVLQKLSLMR-QLVVSTGGGAVTR 77 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~~~~~~g~~~~~--~~~~~~~~~~~~~e~~~~~~l~~~~-~~vi~~g~~~v~~ 77 (193)
+|||||||+++.|++.+++.+++.|.+..... +..... ........ ....-...+......+ .+|+. .. ...
T Consensus 7 ~pgsGKSt~a~~l~~~~~~~~i~~D~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~g~~~vvd-~~--~~~ 81 (143)
T PF13671_consen 7 PPGSGKSTLAKRLAKRLGAVVISQDEIRRRLA-GEDPPSPSDYIEAEER-AYQILNAAIRKALRNGNSVVVD-NT--NLS 81 (143)
T ss_dssp STTSSHHHHHHHHHHHSTEEEEEHHHHHHHHC-CSSSGCCCCCHHHHHH-HHHHHHHHHHHHHHTT-EEEEE-SS----S
T ss_pred CCCCCHHHHHHHHHHHCCCEEEeHHHHHHHHc-ccccccchhHHHHHHH-HHHHHHHHHHHHHHcCCCceec-cC--cCC
Confidence 69999999999999999999999999887765 211000 00000001 1111112233333333 44444 32 222
Q ss_pred HhhHH----hcc-C---CeEEEEECCHHHHHHHHhccC
Q 029455 78 PINWR----YMQ-K---GISVWLDVPLEALAQRIAAVG 107 (193)
Q Consensus 78 ~~~~~----~l~-~---~~vV~L~~~~~~~~~Rl~~~~ 107 (193)
...+. .++ . ..+|+|++|.+++.+|+..|.
T Consensus 82 ~~~r~~~~~~~~~~~~~~~~v~l~~~~~~~~~R~~~R~ 119 (143)
T PF13671_consen 82 REERARLRELARKHGYPVRVVYLDAPEETLRERLAQRN 119 (143)
T ss_dssp HHHHHHHHHHHHHCTEEEEEEEECHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHcCCeEEEEEEECCHHHHHHHHHhcC
Confidence 33232 222 1 378999999999999999853
No 96
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=99.08 E-value=1.2e-09 Score=89.22 Aligned_cols=105 Identities=19% Similarity=0.191 Sum_probs=58.3
Q ss_pred CCCCchHHHHHHHHHhc-CCcEeechHHHHHHhCCCC-HHH-HHHHhcchhhHHHHHHHHHHHhcc-CCcEEEeCCceee
Q 029455 1 MMGSGKTTVGKILSGVL-GYSFFDCDTLIEQSVDGTS-VAE-IFKLYGEGFFREKETEVLQKLSLM-RQLVVSTGGGAVT 76 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l-g~~~~d~d~~~~~~~~g~~-~~~-~~~~~~~~~~~~~e~~~~~~l~~~-~~~vi~~g~~~v~ 76 (193)
+|||||||+|+.|++++ ++.+++.|.+.+... +.. ... .+...++..........+...... ..+|+++......
T Consensus 10 ~pGSGKSTla~~L~~~~~~~~~l~~D~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~vIid~~~~~~~ 88 (300)
T PHA02530 10 VPGSGKSTWAREFAAKNPKAVNVNRDDLRQSLF-GHGEWGEYKFTKEKEDLVTKAQEAAALAALKSGKSVIISDTNLNPE 88 (300)
T ss_pred CCCCCHHHHHHHHHHHCCCCEEEeccHHHHHhc-CCCcccccccChHHHHHHHHHHHHHHHHHHHcCCeEEEeCCCCCHH
Confidence 69999999999999999 899999999876654 211 000 000111111222222223333333 3444443211111
Q ss_pred CHhhHHh-cc-C---CeEEEEECCHHHHHHHHhcc
Q 029455 77 RPINWRY-MQ-K---GISVWLDVPLEALAQRIAAV 106 (193)
Q Consensus 77 ~~~~~~~-l~-~---~~vV~L~~~~~~~~~Rl~~~ 106 (193)
....+.. ++ . -.+|||.+|.+++.+|+.+|
T Consensus 89 ~~~~~~~la~~~~~~~~~v~l~~~~e~~~~R~~~R 123 (300)
T PHA02530 89 RRRKWKELAKELGAEFEEKVFDVPVEELVKRNRKR 123 (300)
T ss_pred HHHHHHHHHHHcCCeEEEEEeCCCHHHHHHHHHcc
Confidence 1112222 22 1 24799999999999999975
No 97
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=99.06 E-value=1.4e-09 Score=82.08 Aligned_cols=146 Identities=22% Similarity=0.249 Sum_probs=73.5
Q ss_pred CCCCchHHHHHHHHHhcCCcE--eechHHHHHHhCC-----CCHHHHHHH--hcchhhHHHH---HHHHHHHhccCCcEE
Q 029455 1 MMGSGKTTVGKILSGVLGYSF--FDCDTLIEQSVDG-----TSVAEIFKL--YGEGFFREKE---TEVLQKLSLMRQLVV 68 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~--~d~d~~~~~~~~g-----~~~~~~~~~--~~~~~~~~~e---~~~~~~l~~~~~~vi 68 (193)
+|-|||||||+.|.+.+.-++ +..|.++..+..+ ..+.. -.. .....+.... ...+..+...+..||
T Consensus 9 ~sSSGKSsia~~Lq~~~~~p~~~l~~D~f~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~iaa~a~aG~~VI 87 (174)
T PF07931_consen 9 PSSSGKSSIARALQERLPEPWLHLSVDTFVDMMPPGRYRPGDGLEP-AGDRPDGGPLFRRLYAAMHAAIAAMARAGNNVI 87 (174)
T ss_dssp -TTSSHHHHHHHHHHHSSS-EEEEEHHHHHHHS-GGGGTSTTSEEE-ETTSEEE-HHHHHHHHHHHHHHHHHHHTT-EEE
T ss_pred CCCCCHHHHHHHHHHhCcCCeEEEecChHHhhcCcccccCCccccc-cccCCchhHHHHHHHHHHHHHHHHHHhCCCCEE
Confidence 478999999999999998664 5678877643211 01000 000 0011122221 223344444555555
Q ss_pred EeCCceeeCHhh----H-HhccC--CeEEEEECCHHHHHHHHhccCCCCCCccccCCCCChhHHHHHHHHHHHHHHHHHH
Q 029455 69 STGGGAVTRPIN----W-RYMQK--GISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAY 141 (193)
Q Consensus 69 ~~g~~~v~~~~~----~-~~l~~--~~vV~L~~~~~~~~~Rl~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~r~~~y 141 (193)
..+ ++..+.. + ..|.. -++|-|.||.+++.+|-..|+ .|+. +- +..+.. ..+
T Consensus 88 vD~--v~~~~~~l~d~l~~~L~~~~vl~VgV~Cpleil~~RE~~Rg--DR~~------G~----a~~q~~-------~Vh 146 (174)
T PF07931_consen 88 VDD--VFLGPRWLQDCLRRLLAGLPVLFVGVRCPLEILERRERARG--DRPI------GL----AAWQAE-------HVH 146 (174)
T ss_dssp EEE----TTTHHHHHHHHHHHTTS-EEEEEEE--HHHHHHHHHHHT--SSST------TH----HHHHTT-------GGG
T ss_pred Eec--CccCcHHHHHHHHHHhCCCceEEEEEECCHHHHHHHHHhcC--Ccch------HH----HHHHHh-------hcc
Confidence 442 2222221 2 33443 378889999999999999874 3432 10 111111 012
Q ss_pred hhccceeechhhhhhcccccCCCCCHHHHHHHHHHHH
Q 029455 142 ANANARVSLENIAVKLGHKDVSSLTPVTIAIEALEQI 178 (193)
Q Consensus 142 ~~~~~~i~~~~~~~~~~~iDt~~~~~~~~~~~i~~~~ 178 (193)
+. . .|++.||||..+|+++++.|++.+
T Consensus 147 ~~--~--------~YDleVDTs~~sp~ecA~~I~~~~ 173 (174)
T PF07931_consen 147 EG--G--------RYDLEVDTSATSPEECAREILARL 173 (174)
T ss_dssp TT-------------SEEEETTSS-HHHHHHHHHTT-
T ss_pred cC--C--------CCCEEEECCCCCHHHHHHHHHHHh
Confidence 11 0 234457999999999999998765
No 98
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional
Probab=99.05 E-value=7.2e-09 Score=94.98 Aligned_cols=32 Identities=25% Similarity=0.425 Sum_probs=29.7
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHHHHHh
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQSV 32 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~~~~~ 32 (193)
||||||||+|+.||++||+.|+|++.+++..+
T Consensus 42 ~~gsGKst~~~~la~~l~~~~~~~g~~yRa~a 73 (863)
T PRK12269 42 PAGSGKSSVCRLLASRLGAQCLNTGSFYRAFT 73 (863)
T ss_pred CCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHH
Confidence 79999999999999999999999999988653
No 99
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.04 E-value=4.7e-10 Score=100.52 Aligned_cols=147 Identities=18% Similarity=0.209 Sum_probs=86.2
Q ss_pred CCCCchHHHHHHHHHhc-----CCcEeechHHHHHHhCCCCHHHHHHHhcchhhHHHHHHHHHHHhccCCcEEEeCCcee
Q 029455 1 MMGSGKTTVGKILSGVL-----GYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFREKETEVLQKLSLMRQLVVSTGGGAV 75 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l-----g~~~~d~d~~~~~~~~g~~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~vi~~g~~~v 75 (193)
+|||||||+|+.|+++| ++.+++.|.+......+.... .......++.+. .+...+...+..|+.+. ..
T Consensus 468 ~~gsGKst~a~~l~~~l~~~~~~~~~l~~D~~r~~l~~~~~~~---~~~r~~~~~~l~-~~a~~~~~~G~~Vivda--~~ 541 (632)
T PRK05506 468 LSGSGKSTIANLVERRLHALGRHTYLLDGDNVRHGLNRDLGFS---DADRVENIRRVA-EVARLMADAGLIVLVSF--IS 541 (632)
T ss_pred CCCchHHHHHHHHHHHHHHcCCCEEEEcChhhhhccCCCCCCC---HHHHHHHHHHHH-HHHHHHHhCCCEEEEEC--CC
Confidence 58999999999999997 357899999876443222111 111223344331 12222333343344332 22
Q ss_pred eCHhhHHhc----cC--CeEEEEECCHHHHHHHHhccCCCCCCccccCCCCChhHHHHHHHHHHHHHHHHHHh--h-ccc
Q 029455 76 TRPINWRYM----QK--GISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYA--N-ANA 146 (193)
Q Consensus 76 ~~~~~~~~l----~~--~~vV~L~~~~~~~~~Rl~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~r~~~y~--~-~~~ 146 (193)
.....++.+ .. ..+|||++|.+++.+|. .||+....+ .+.+..++..+.+ |. . ++.
T Consensus 542 ~~~~~R~~~r~l~~~~~~~~v~L~~~~e~~~~R~------~r~L~~~~~--------~~~l~~l~~~r~~-y~~P~~a~~ 606 (632)
T PRK05506 542 PFREERELARALHGEGEFVEVFVDTPLEVCEARD------PKGLYAKAR--------AGEIKNFTGIDSP-YEAPENPEL 606 (632)
T ss_pred CCHHHHHHHHHhcccCCeEEEEECCCHHHHHhhC------Ccchhhhcc--------ccccccccccccC-CCCCCCCeE
Confidence 223333322 22 37899999999999994 256653211 1234444555555 44 2 444
Q ss_pred eeechhhhhhcccccCCCCCHHHHHHHHHHHHHh
Q 029455 147 RVSLENIAVKLGHKDVSSLTPVTIAIEALEQIEG 180 (193)
Q Consensus 147 ~i~~~~~~~~~~~iDt~~~~~~~~~~~i~~~~~~ 180 (193)
+ ||++..++++++++|++++..
T Consensus 607 ~------------Id~~~~s~~e~v~~Ii~~l~~ 628 (632)
T PRK05506 607 R------------LDTTGRSPEELAEQVLELLRR 628 (632)
T ss_pred E------------EeCCCCCHHHHHHHHHHHHHH
Confidence 4 588889999999999999864
No 100
>PRK05480 uridine/cytidine kinase; Provisional
Probab=99.03 E-value=5.1e-09 Score=81.31 Aligned_cols=29 Identities=34% Similarity=0.415 Sum_probs=24.4
Q ss_pred CCCCchHHHHHHHHHhcC---CcEeechHHHH
Q 029455 1 MMGSGKTTVGKILSGVLG---YSFFDCDTLIE 29 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg---~~~~d~d~~~~ 29 (193)
++||||||+++.|++.++ +.+++.|.++.
T Consensus 14 ~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~~~ 45 (209)
T PRK05480 14 GSGSGKTTVASTIYEELGDESIAVIPQDSYYK 45 (209)
T ss_pred CCCCCHHHHHHHHHHHhCCCceEEEeCCcccc
Confidence 589999999999999983 56788888754
No 101
>PRK13973 thymidylate kinase; Provisional
Probab=99.01 E-value=1.1e-07 Score=74.14 Aligned_cols=161 Identities=17% Similarity=0.178 Sum_probs=80.5
Q ss_pred CCCCchHHHHHHHHHhc---CCcEeec--------hHHHHHHhCC-----CCH--HH-HHHHhcchhhHHHHHHHHHHHh
Q 029455 1 MMGSGKTTVGKILSGVL---GYSFFDC--------DTLIEQSVDG-----TSV--AE-IFKLYGEGFFREKETEVLQKLS 61 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l---g~~~~d~--------d~~~~~~~~g-----~~~--~~-~~~~~~~~~~~~~e~~~~~~l~ 61 (193)
++||||||+++.|++.| |..++.+ ...+++...+ ... .. ++.. ..+...+ ..+....
T Consensus 11 ~dGsGKtTq~~~l~~~l~~~g~~~~~~~~p~~~~~g~~ir~~l~~~~~~~~~~~~~~ll~~a---~r~~~~~-~~i~~~l 86 (213)
T PRK13973 11 GEGAGKSTQIRLLAERLRAAGYDVLVTREPGGSPGAEAIRHVLLSGAAELYGPRMEALLFAA---ARDDHVE-EVIRPAL 86 (213)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCeEEEEECCCCCchHHHHHHHHcCCCccCCCHHHHHHHHHH---HHHHHHH-HHHHHHH
Confidence 57999999999999999 8877754 4555554311 110 00 1110 0011111 1122223
Q ss_pred ccCCcEEEeCC---ceee-------CHhhH---H-h----ccCCeEEEEECCHHHHHHHHhccCCCC-CCccccCCCCCh
Q 029455 62 LMRQLVVSTGG---GAVT-------RPINW---R-Y----MQKGISVWLDVPLEALAQRIAAVGTDS-RPLLHQCESGDA 122 (193)
Q Consensus 62 ~~~~~vi~~g~---~~v~-------~~~~~---~-~----l~~~~vV~L~~~~~~~~~Rl~~~~~~~-R~~~~~~~~~~~ 122 (193)
..+..||+... ++.+ ..... . . ..++++|||++|++++.+|+.+|.... ...... ..
T Consensus 87 ~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PD~vi~Ldv~~e~~~~Rl~~R~~~~~~~~~e~---~~- 162 (213)
T PRK13973 87 ARGKIVLCDRFIDSTRAYQGVTGNVDPALLAALERVAINGVMPDLTLILDIPAEVGLERAAKRRGSDTPDRFEK---ED- 162 (213)
T ss_pred HCCCEEEEcchhhhHHHHcccccCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhccCCCccCchhh---ch-
Confidence 34555665431 0111 11111 1 1 124899999999999999998752110 011110 00
Q ss_pred hHHHHHHHHHHHHHHHHHHhhccceeechhhhhhcccccCCCCCHHHHHHHHHHHHHhhhc
Q 029455 123 YTEALNRLSTLWEERGEAYANANARVSLENIAVKLGHKDVSSLTPVTIAIEALEQIEGFLK 183 (193)
Q Consensus 123 ~~~~~~~~~~~~~~r~~~y~~~~~~i~~~~~~~~~~~iDt~~~~~~~~~~~i~~~~~~~~~ 183 (193)
. +..+...+.|.+....| .+.++ +||+ ..+++++.++|...+..++.
T Consensus 163 ~-~~~~~~~~~y~~l~~~~--~~~~~----------~Ida-~~~~e~V~~~I~~~i~~~~~ 209 (213)
T PRK13973 163 L-AFHEKRREAFLQIAAQE--PERCV----------VIDA-TASPEAVAAEIWAAVDQRLL 209 (213)
T ss_pred H-HHHHHHHHHHHHHHHhC--CCcEE----------EEcC-CCCHHHHHHHHHHHHHHHHh
Confidence 0 11122222222211111 11111 4786 58999999999999987654
No 102
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=99.00 E-value=7.5e-08 Score=73.46 Aligned_cols=21 Identities=29% Similarity=0.351 Sum_probs=19.0
Q ss_pred CCeEEEEECCHHHHHHHHhcc
Q 029455 86 KGISVWLDVPLEALAQRIAAV 106 (193)
Q Consensus 86 ~~~vV~L~~~~~~~~~Rl~~~ 106 (193)
++.+|||++|++++.+|+.+|
T Consensus 126 ~~~~i~l~~~~~~~~~R~~~R 146 (200)
T cd01672 126 PDLTILLDIDPEVGLARIEAR 146 (200)
T ss_pred CCEEEEEeCCHHHHHHHHHhc
Confidence 378999999999999999874
No 103
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=98.98 E-value=1.3e-09 Score=80.73 Aligned_cols=98 Identities=27% Similarity=0.286 Sum_probs=55.6
Q ss_pred CCCCchHHHHHHHHHhc---C--CcEeechHHHHHHhCCCCHHHHHHHhcchhhHHHHHHHHHHHhccCCcEEEeCCcee
Q 029455 1 MMGSGKTTVGKILSGVL---G--YSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFREKETEVLQKLSLMRQLVVSTGGGAV 75 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l---g--~~~~d~d~~~~~~~~g~~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~vi~~g~~~v 75 (193)
+|||||||||+.|.++| | ..++|.|.+......+.... .+.+.+..+++ ..+...+...+..||++. +.
T Consensus 10 lsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~~l~~dl~fs---~~dR~e~~rr~-~~~A~ll~~~G~ivIva~--is 83 (156)
T PF01583_consen 10 LSGSGKTTLARALERRLFARGIKVYLLDGDNLRHGLNADLGFS---KEDREENIRRI-AEVAKLLADQGIIVIVAF--IS 83 (156)
T ss_dssp STTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCTTTTTT--SS---HHHHHHHHHHH-HHHHHHHHHTTSEEEEE-----
T ss_pred CCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhhccCCCCCCC---HHHHHHHHHHH-HHHHHHHHhCCCeEEEee--cc
Confidence 58999999999999988 3 46788888764332111111 12233334433 222333444455555432 22
Q ss_pred eCHhhHHh----ccC--CeEEEEECCHHHHHHHHh
Q 029455 76 TRPINWRY----MQK--GISVWLDVPLEALAQRIA 104 (193)
Q Consensus 76 ~~~~~~~~----l~~--~~vV~L~~~~~~~~~Rl~ 104 (193)
...+.++. +.+ .+.|||+||.++|.+|-.
T Consensus 84 p~~~~R~~~R~~~~~~~f~eVyv~~~~e~~~~RD~ 118 (156)
T PF01583_consen 84 PYREDREWARELIPNERFIEVYVDCPLEVCRKRDP 118 (156)
T ss_dssp -SHHHHHHHHHHHHTTEEEEEEEES-HHHHHHHTT
T ss_pred CchHHHHHHHHhCCcCceEEEEeCCCHHHHHHhCc
Confidence 33444433 332 479999999999999975
No 104
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=98.97 E-value=1.3e-08 Score=81.77 Aligned_cols=74 Identities=23% Similarity=0.285 Sum_probs=51.1
Q ss_pred CeEEEEECCHHHHHHHHhccCCCCCCccccCCCCChhHHHHHHHHHHHHHHHHHHhhccceeechhhhhhcccccCCCCC
Q 029455 87 GISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVSLENIAVKLGHKDVSSLT 166 (193)
Q Consensus 87 ~~vV~L~~~~~~~~~Rl~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~r~~~y~~~~~~i~~~~~~~~~~~iDt~~~~ 166 (193)
-.+|||+|+.+++++|..+ .++..|+... +... +..+.-++.+ .+..+.||.+| |||+++
T Consensus 83 ~~ilFLdA~d~~LirRy~e-TRR~HPL~~~---~~~l-e~I~~Er~~L---~~lr~~Ad~vI------------DTs~l~ 142 (284)
T PF03668_consen 83 VRILFLDASDEVLIRRYSE-TRRRHPLSSD---GSLL-EAIEKERELL---EPLRERADLVI------------DTSNLS 142 (284)
T ss_pred eEEEEEECChHHHHHHHHh-ccCCCCCCCC---CCcH-HHHHHHHHHH---HHHHHhCCEEE------------ECCCCC
Confidence 3799999999999999987 2356676543 2111 1222222332 24555688886 899999
Q ss_pred HHHHHHHHHHHHHh
Q 029455 167 PVTIAIEALEQIEG 180 (193)
Q Consensus 167 ~~~~~~~i~~~~~~ 180 (193)
+.+..+.|.+.+..
T Consensus 143 ~~~Lr~~i~~~~~~ 156 (284)
T PF03668_consen 143 VHQLRERIRERFGG 156 (284)
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999888763
No 105
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.95 E-value=1e-08 Score=78.96 Aligned_cols=30 Identities=30% Similarity=0.316 Sum_probs=25.3
Q ss_pred CCCCchHHHHHHHHHhc---CCcEeechHHHHH
Q 029455 1 MMGSGKTTVGKILSGVL---GYSFFDCDTLIEQ 30 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l---g~~~~d~d~~~~~ 30 (193)
++||||||+++.|+..+ +..+++.|+++..
T Consensus 7 ~~GsGKSTl~~~l~~~l~~~~~~v~~~D~~~~~ 39 (198)
T cd02023 7 GSGSGKTTVAEEIIEQLGNPKVVIISQDSYYKD 39 (198)
T ss_pred CCCCCHHHHHHHHHHHhCCCCeEEEEecccccc
Confidence 68999999999999987 3678899987643
No 106
>PRK07261 topology modulation protein; Provisional
Probab=98.92 E-value=2.6e-09 Score=80.62 Aligned_cols=91 Identities=19% Similarity=0.139 Sum_probs=56.5
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHHHHHhCCCCHHHHHHHhcchhhHHHHHHHHHHHhccCCcEEEeCCceeeCHhh
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFREKETEVLQKLSLMRQLVVSTGGGAVTRPIN 80 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~~~~~~g~~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~vi~~g~~~v~~~~~ 80 (193)
+|||||||+|+.|++.+|+++++.|.+.... +.. ......+. ..+..+...+.+|+. |... ....
T Consensus 8 ~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~--~~~------~~~~~~~~----~~~~~~~~~~~wIid-g~~~--~~~~ 72 (171)
T PRK07261 8 YSGSGKSTLARKLSQHYNCPVLHLDTLHFQP--NWQ------ERDDDDMI----ADISNFLLKHDWIID-GNYS--WCLY 72 (171)
T ss_pred CCCCCHHHHHHHHHHHhCCCeEecCCEEecc--ccc------cCCHHHHH----HHHHHHHhCCCEEEc-Ccch--hhhH
Confidence 6999999999999999999999999875421 110 00111111 122333444455554 5311 1110
Q ss_pred HHhcc-CCeEEEEECCHHHHHHHHhcc
Q 029455 81 WRYMQ-KGISVWLDVPLEALAQRIAAV 106 (193)
Q Consensus 81 ~~~l~-~~~vV~L~~~~~~~~~Rl~~~ 106 (193)
...+. .+.+|||++|..+++.|+.+|
T Consensus 73 ~~~l~~ad~vI~Ld~p~~~~~~R~lkR 99 (171)
T PRK07261 73 EERMQEADQIIFLNFSRFNCLYRAFKR 99 (171)
T ss_pred HHHHHHCCEEEEEcCCHHHHHHHHHHH
Confidence 11222 389999999999999999876
No 107
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=98.91 E-value=9.7e-08 Score=74.81 Aligned_cols=71 Identities=14% Similarity=0.221 Sum_probs=42.8
Q ss_pred CCeEEEEECCHHHHHHHHhccCCCCCCccccCCCCChhHHHHHHHHHHHHHHH-HHHhh-ccceeechhhhhhcccccCC
Q 029455 86 KGISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERG-EAYAN-ANARVSLENIAVKLGHKDVS 163 (193)
Q Consensus 86 ~~~vV~L~~~~~~~~~Rl~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~r~-~~y~~-~~~~i~~~~~~~~~~~iDt~ 163 (193)
++++|||++|++++.+|+.+|+ |+..... .. +.++.+.+.+.++. +.|.. ++.++ ||.+
T Consensus 143 Pd~~i~l~~~~~~~~~Ri~~R~---~~~e~~~--~~---~yl~~l~~~y~~~~~~~~~~~~~~i~-----------id~~ 203 (219)
T cd02030 143 PHLVIYLDVPVPEVQKRIKKRG---DPHEMKV--TS---AYLQDIENAYKKTFLPEISEHSEVLQ-----------YDWT 203 (219)
T ss_pred CCEEEEEeCCHHHHHHHHHHcC---Cchhhcc--cH---HHHHHHHHHHHHHHHHhhccCCCEEE-----------EeCC
Confidence 4899999999999999998753 4322221 11 23566777776653 23544 34443 6742
Q ss_pred -CCCHHHHHHHHH
Q 029455 164 -SLTPVTIAIEAL 175 (193)
Q Consensus 164 -~~~~~~~~~~i~ 175 (193)
..+++++++.|.
T Consensus 204 ~~~~~e~i~~~I~ 216 (219)
T cd02030 204 EAGDTEKVVEDIE 216 (219)
T ss_pred ChhhHHHHHHHHH
Confidence 155666666553
No 108
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=98.91 E-value=2.1e-07 Score=71.76 Aligned_cols=32 Identities=13% Similarity=0.225 Sum_probs=27.1
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHHHHHh
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQSV 32 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~~~~~ 32 (193)
+|||||||+|+.|++++|+.++...+++++..
T Consensus 11 ~~G~GKst~a~~l~~~~~~~~~~~~D~~r~~~ 42 (197)
T PRK12339 11 IPGVGKTSISGYIARHRAIDIVLSGDYLREFL 42 (197)
T ss_pred CCCCCHHHHHHHHHHhcCCeEEehhHHHHHHH
Confidence 59999999999999999998877777666554
No 109
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=98.89 E-value=1.7e-09 Score=89.66 Aligned_cols=102 Identities=21% Similarity=0.305 Sum_probs=67.4
Q ss_pred CCCCchHHHHHHHHHhcCC------cEeechHHHH-----HHhCCCCHHHHHHHhcchhhHHHHHHHHHHHhccCCcEEE
Q 029455 1 MMGSGKTTVGKILSGVLGY------SFFDCDTLIE-----QSVDGTSVAEIFKLYGEGFFREKETEVLQKLSLMRQLVVS 69 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~------~~~d~d~~~~-----~~~~g~~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~vi~ 69 (193)
+|||||||+++.|++.|+. .+++.|+++. ... |.+++++++. ||+ .+..+++ ..|++
T Consensus 7 l~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i~~~~~~~~~-~~~~~~~~k~-----~R~----~i~~~le--~~v~a 74 (340)
T TIGR03575 7 LPAAGKSTLARSLSATLRRERGWAVAVITYDDIIPEAAFELDQ-SREIPSQWKQ-----FRQ----ELLKYLE--HFLVA 74 (340)
T ss_pred CCCCCHHHHHHHHHHHHHhccCCeEEEEcccccccccchhhhc-CCCcHHHHHH-----HHH----HHHHHHH--HHHHH
Confidence 6999999999999977753 4899999983 333 7777776633 442 2222332 23444
Q ss_pred eCCceeeCH------hhH----Hhcc-CCeEEEEECCHHHHHHHHhccCCCCCCccc
Q 029455 70 TGGGAVTRP------INW----RYMQ-KGISVWLDVPLEALAQRIAAVGTDSRPLLH 115 (193)
Q Consensus 70 ~g~~~v~~~------~~~----~~l~-~~~vV~L~~~~~~~~~Rl~~~~~~~R~~~~ 115 (193)
.|+|..+.+ ..| ..+. .+++|||+++.+....|+.... -+||..-
T Consensus 75 ~~~g~~~~~~~~~~~~~~~~nv~~L~~~g~vv~L~as~e~~~~rLi~~~-Lsrpllv 130 (340)
T TIGR03575 75 VINGSELSAPPGKTEGMWEDFVDCLKEQGLIISSGASEAQGCHSLTKPA-VSRPLCL 130 (340)
T ss_pred hcCcccccCCcccchhhhHHHHHHHHhCCeEEEcCCcHHHHHHHHhHHH-HhCCCCc
Confidence 555555433 233 4555 4899999999999999998531 2466543
No 110
>PRK00698 tmk thymidylate kinase; Validated
Probab=98.87 E-value=3.4e-07 Score=70.43 Aligned_cols=75 Identities=23% Similarity=0.266 Sum_probs=43.2
Q ss_pred CCeEEEEECCHHHHHHHHhccCCCCCCccccCCCCChhHHHHHHHHHHHHHHHHHHhh--ccceeechhhhhhcccccCC
Q 029455 86 KGISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYAN--ANARVSLENIAVKLGHKDVS 163 (193)
Q Consensus 86 ~~~vV~L~~~~~~~~~Rl~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~r~~~y~~--~~~~i~~~~~~~~~~~iDt~ 163 (193)
++++|||++|++++.+|+.+|+. ...... .. .+....+...+. ..... .+.+ +||++
T Consensus 128 pd~~i~l~~~~~~~~~Rl~~R~~--~~~~~~---~~--~~~~~~~~~~y~---~~~~~~~~~~~-----------~Id~~ 186 (205)
T PRK00698 128 PDLTLYLDVPPEVGLARIRARGE--LDRIEQ---EG--LDFFERVREGYL---ELAEKEPERIV-----------VIDAS 186 (205)
T ss_pred CCEEEEEeCCHHHHHHHHHhcCC--cchhhh---hh--HHHHHHHHHHHH---HHHHhCCCeEE-----------EEeCC
Confidence 47999999999999999987421 000000 00 011122222222 11111 1222 47864
Q ss_pred CCCHHHHHHHHHHHHHhhh
Q 029455 164 SLTPVTIAIEALEQIEGFL 182 (193)
Q Consensus 164 ~~~~~~~~~~i~~~~~~~~ 182 (193)
.+++++.++|.+.+.+++
T Consensus 187 -~~~e~v~~~i~~~i~~~~ 204 (205)
T PRK00698 187 -QSLEEVHEDILAVIKAWL 204 (205)
T ss_pred -CCHHHHHHHHHHHHHHHh
Confidence 799999999999987764
No 111
>PRK12338 hypothetical protein; Provisional
Probab=98.83 E-value=2.9e-07 Score=75.58 Aligned_cols=32 Identities=25% Similarity=0.324 Sum_probs=27.0
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHHHHHh
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQSV 32 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~~~~~ 32 (193)
+|||||||+|+.||+++|+.++..++.+++..
T Consensus 12 ~sGsGKST~a~~la~~l~~~~~~~tD~~r~~~ 43 (319)
T PRK12338 12 ASGIGKSTIASELARTLNIKHLIETDFIREVV 43 (319)
T ss_pred CCCCCHHHHHHHHHHHCCCeEEccChHHHHHH
Confidence 58999999999999999999886666666554
No 112
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=98.82 E-value=3.4e-07 Score=70.10 Aligned_cols=21 Identities=19% Similarity=0.434 Sum_probs=19.1
Q ss_pred CCeEEEEECCHHHHHHHHhcc
Q 029455 86 KGISVWLDVPLEALAQRIAAV 106 (193)
Q Consensus 86 ~~~vV~L~~~~~~~~~Rl~~~ 106 (193)
.+++|||++|++++.+|+..|
T Consensus 128 ~d~~i~l~~~~~~~~~R~~~r 148 (195)
T TIGR00041 128 PDLTIYLDIDPEVALERLRKR 148 (195)
T ss_pred CCEEEEEeCCHHHHHHHHHhc
Confidence 489999999999999999874
No 113
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=98.74 E-value=9.6e-08 Score=74.12 Aligned_cols=30 Identities=43% Similarity=0.478 Sum_probs=25.9
Q ss_pred CCCCchHHHHHHHHHhcCCc---EeechHHHHH
Q 029455 1 MMGSGKTTVGKILSGVLGYS---FFDCDTLIEQ 30 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~---~~d~d~~~~~ 30 (193)
++||||||+|+.|++.++.. .++.|+++..
T Consensus 16 ~SgSGKTTva~~l~~~~~~~~~~~I~~D~YYk~ 48 (218)
T COG0572 16 GSGSGKTTVAKELSEQLGVEKVVVISLDDYYKD 48 (218)
T ss_pred CCCCCHHHHHHHHHHHhCcCcceEeeccccccc
Confidence 58999999999999999954 7888888764
No 114
>PTZ00301 uridine kinase; Provisional
Probab=98.74 E-value=1.4e-07 Score=73.46 Aligned_cols=29 Identities=24% Similarity=0.308 Sum_probs=22.8
Q ss_pred CCCCchHHHHHHHHHhc----C---CcEeechHHHH
Q 029455 1 MMGSGKTTVGKILSGVL----G---YSFFDCDTLIE 29 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l----g---~~~~d~d~~~~ 29 (193)
+|||||||+|+.|++++ | ..++..|.+++
T Consensus 11 ~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~yy~ 46 (210)
T PTZ00301 11 ASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYYR 46 (210)
T ss_pred CCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCcc
Confidence 69999999999998776 2 24677788764
No 115
>PRK06696 uridine kinase; Validated
Probab=98.71 E-value=2e-07 Score=73.18 Aligned_cols=29 Identities=28% Similarity=0.393 Sum_probs=23.8
Q ss_pred CCCCchHHHHHHHHHhc---CCcEe--echHHHH
Q 029455 1 MMGSGKTTVGKILSGVL---GYSFF--DCDTLIE 29 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l---g~~~~--d~d~~~~ 29 (193)
+|||||||+|+.|++.| |.+++ ++|+++.
T Consensus 30 ~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~ 63 (223)
T PRK06696 30 ITASGKTTFADELAEEIKKRGRPVIRASIDDFHN 63 (223)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCeEEEeccccccC
Confidence 58999999999999999 65554 5888763
No 116
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=98.71 E-value=5.1e-09 Score=94.33 Aligned_cols=139 Identities=18% Similarity=0.176 Sum_probs=75.0
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHHHHHhCCCCHH-HHHHHhcchhhHHHHHHHHHHHhc-cCCcEEEeCCceeeCH
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVA-EIFKLYGEGFFREKETEVLQKLSL-MRQLVVSTGGGAVTRP 78 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~~~~~~g~~~~-~~~~~~~~~~~~~~e~~~~~~l~~-~~~~vi~~g~~~v~~~ 78 (193)
+||+||||+|+.|++.|+|..++++.+....+ +..+. ..+...++..++..+.++...+.. ..++++.+|++.+++.
T Consensus 223 lp~~GKStia~~L~~~l~~~~~~~~~~~~~~~-rr~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~v~~~GgvaI~Da 301 (664)
T PTZ00322 223 LPGRGKTYVARQIQRYFQWNGLQSRIFIHQAY-RRRLERRGGAVSSPTGAAEVEFRIAKAIAHDMTTFICKTDGVAVLDG 301 (664)
T ss_pred cCCCChhHHHHHHHHHHHhcCCCcEEEccchh-HhhhccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 59999999999999999887777666553332 11111 112223444455555444444332 1233444444444444
Q ss_pred hhH---------HhccC------CeEEEEE--CCHHHHHHHHhccCCCCCCccccCCCCChhHHHHHHHHHHHHHHHHHH
Q 029455 79 INW---------RYMQK------GISVWLD--VPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAY 141 (193)
Q Consensus 79 ~~~---------~~l~~------~~vV~L~--~~~~~~~~Rl~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~r~~~y 141 (193)
.|. +.++. ..+|||+ |+...++++... |+.... |+ .+++..+.+.+.+..+.+.|
T Consensus 302 tN~t~~rR~~~~~~~~~~~~~~~~~vifle~vc~~~~~i~~ni~-----r~~~~~--~~-~~e~~~~~~~~~~~~~~~~Y 373 (664)
T PTZ00322 302 TNTTHARRMALLRAIRETGLIRMTRVVFVEVVNNNSETIRRNVL-----RAKEMF--PG-APEDFVDRYYEVIEQLEAVY 373 (664)
T ss_pred CCCCHHHHHHHHHHHHHcCCCccCcEEEEEEeCCCHHHHHHHHH-----HHHhcC--CC-CHHHHHHHHHHHHHHHHhhc
Confidence 221 11221 2477765 455555555543 332222 11 23345677888888889999
Q ss_pred hhcccee
Q 029455 142 ANANARV 148 (193)
Q Consensus 142 ~~~~~~i 148 (193)
+.++..+
T Consensus 374 e~~~~~~ 380 (664)
T PTZ00322 374 KSLNPVT 380 (664)
T ss_pred ccCCccc
Confidence 8866554
No 117
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=98.69 E-value=3.3e-08 Score=75.56 Aligned_cols=30 Identities=30% Similarity=0.499 Sum_probs=26.8
Q ss_pred CCCCchHHHHHHHHHhc-CCcEeechHHHHH
Q 029455 1 MMGSGKTTVGKILSGVL-GYSFFDCDTLIEQ 30 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l-g~~~~d~d~~~~~ 30 (193)
+|||||||+|+.|++.+ ++.+++.|+++..
T Consensus 7 ~sgsGKTtla~~l~~~~~~~~~i~~Ddf~~~ 37 (187)
T cd02024 7 VTNSGKTTLAKLLQRILPNCCVIHQDDFFKP 37 (187)
T ss_pred CCCCCHHHHHHHHHHHcCCCeEEccccccCC
Confidence 58999999999999998 6899999998753
No 118
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=98.68 E-value=3.6e-07 Score=69.90 Aligned_cols=23 Identities=39% Similarity=0.653 Sum_probs=19.9
Q ss_pred CCCCchHHHHHHHHHhcCCcEee
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFD 23 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d 23 (193)
++||||||+++.|++.+|+.++.
T Consensus 7 ~~GsGKSTl~~~L~~~~~~~~~~ 29 (193)
T cd01673 7 NIGAGKSTLAKELAEHLGYEVVP 29 (193)
T ss_pred CCCCCHHHHHHHHHHHhCCcccc
Confidence 58999999999999988876653
No 119
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=98.68 E-value=6.6e-07 Score=68.08 Aligned_cols=22 Identities=32% Similarity=0.448 Sum_probs=19.6
Q ss_pred cCCeEEEEECCHHHHHHHHhcc
Q 029455 85 QKGISVWLDVPLEALAQRIAAV 106 (193)
Q Consensus 85 ~~~~vV~L~~~~~~~~~Rl~~~ 106 (193)
+++++|||++|+++..+|+..+
T Consensus 118 ~PDl~~~Ldv~pe~~~~R~~~r 139 (186)
T PF02223_consen 118 KPDLTFFLDVDPEEALKRIAKR 139 (186)
T ss_dssp E-SEEEEEECCHHHHHHHHHHT
T ss_pred CCCEEEEEecCHHHHHHHHHcC
Confidence 4589999999999999999985
No 120
>PRK07667 uridine kinase; Provisional
Probab=98.65 E-value=3.9e-07 Score=70.03 Aligned_cols=30 Identities=30% Similarity=0.385 Sum_probs=24.9
Q ss_pred CCCCchHHHHHHHHHhcC-----CcEeechHHHHH
Q 029455 1 MMGSGKTTVGKILSGVLG-----YSFFDCDTLIEQ 30 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg-----~~~~d~d~~~~~ 30 (193)
+|||||||+|+.|++.++ ..+++.|+++..
T Consensus 25 ~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~~~~ 59 (193)
T PRK07667 25 LSRSGKTTFVANLKENMKQEGIPFHIFHIDDYIVE 59 (193)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcccch
Confidence 589999999999999873 458999997654
No 121
>COG0645 Predicted kinase [General function prediction only]
Probab=98.65 E-value=1.6e-07 Score=69.79 Aligned_cols=101 Identities=22% Similarity=0.295 Sum_probs=61.1
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHHHHHhCCCCHHH-----HH-HHhcchhhHHHHHHHHHHHhccC-CcEEEeCCc
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAE-----IF-KLYGEGFFREKETEVLQKLSLMR-QLVVSTGGG 73 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~~~~~~g~~~~~-----~~-~~~~~~~~~~~e~~~~~~l~~~~-~~vi~~g~~ 73 (193)
.|||||||+|+.|++.+|..++.+|.+.+.+. |.+... ++ .......|..+..... .++..+ +.|++ +
T Consensus 9 l~GsGKstlA~~l~~~lgA~~lrsD~irk~L~-g~p~~~r~~~g~ys~~~~~~vy~~l~~~A~-l~l~~G~~VVlD-a-- 83 (170)
T COG0645 9 LPGSGKSTLARGLAELLGAIRLRSDVIRKRLF-GVPEETRGPAGLYSPAATAAVYDELLGRAE-LLLSSGHSVVLD-A-- 83 (170)
T ss_pred CCCccHhHHHHHHHhhcCceEEehHHHHHHhc-CCcccccCCCCCCcHHHHHHHHHHHHHHHH-HHHhCCCcEEEe-c--
Confidence 48999999999999999999999999988776 533211 00 0001122333322221 223333 44444 2
Q ss_pred eeeCHhhHHh----ccC----CeEEEEECCHHHHHHHHhcc
Q 029455 74 AVTRPINWRY----MQK----GISVWLDVPLEALAQRIAAV 106 (193)
Q Consensus 74 ~v~~~~~~~~----l~~----~~vV~L~~~~~~~~~Rl~~~ 106 (193)
.+..+..++. ... ...|++.+|.+++..|+..|
T Consensus 84 ~~~r~~~R~~~~~~A~~~gv~~~li~~~ap~~v~~~rl~aR 124 (170)
T COG0645 84 TFDRPQERALARALARDVGVAFVLIRLEAPEEVLRGRLAAR 124 (170)
T ss_pred ccCCHHHHHHHHHHHhccCCceEEEEcCCcHHHHHHHHHHh
Confidence 2333433322 121 35699999999999999985
No 122
>KOG3877 consensus NADH:ubiquinone oxidoreductase, NDUFA10/42kDa subunit [Energy production and conversion]
Probab=98.64 E-value=1.6e-07 Score=74.84 Aligned_cols=30 Identities=37% Similarity=0.593 Sum_probs=24.3
Q ss_pred CCCCchHHHHHHHHHhcCCcEe---echHHHHH
Q 029455 1 MMGSGKTTVGKILSGVLGYSFF---DCDTLIEQ 30 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~---d~d~~~~~ 30 (193)
+.|||||++|+.||++||+.++ ++|.+.-.
T Consensus 79 nI~sGK~klAKelAe~Lgf~hfP~~~~d~iyvd 111 (393)
T KOG3877|consen 79 NIGSGKTKLAKELAEQLGFVHFPEFRMDDIYVD 111 (393)
T ss_pred CcccCchhHHHHHHHHhCCcccccccccceeec
Confidence 4699999999999999998665 57766543
No 123
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=98.63 E-value=2.7e-08 Score=70.26 Aligned_cols=28 Identities=43% Similarity=0.624 Sum_probs=26.4
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHH
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLI 28 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~ 28 (193)
+|||||||+|+.|++++|++++++|+++
T Consensus 7 ~~gsGKST~a~~La~~~~~~~i~~d~~~ 34 (121)
T PF13207_consen 7 PPGSGKSTLAKELAERLGFPVISMDDLI 34 (121)
T ss_dssp STTSSHHHHHHHHHHHHTCEEEEEHHHH
T ss_pred CCCCCHHHHHHHHHHHHCCeEEEecceE
Confidence 6999999999999999999999999954
No 124
>PRK13974 thymidylate kinase; Provisional
Probab=98.63 E-value=4.5e-06 Score=65.06 Aligned_cols=75 Identities=12% Similarity=0.020 Sum_probs=45.0
Q ss_pred CCeEEEEECCHHHHHHHHhccCCCCCCccccCCCCChhHHHHHHHHHHHHHHHHHHhhccceeechhhhhhcccccCCCC
Q 029455 86 KGISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVSLENIAVKLGHKDVSSL 165 (193)
Q Consensus 86 ~~~vV~L~~~~~~~~~Rl~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~r~~~y~~~~~~i~~~~~~~~~~~iDt~~~ 165 (193)
++++|||+||++++.+|+..|. ...... ....+.+........|...+..+ .||. ..
T Consensus 135 pd~~i~ld~~~~~~~~R~~~R~---dD~~e~---------~~~~y~~~v~~~y~~y~~~~~~~----------~Ida-~~ 191 (212)
T PRK13974 135 PDLTFFLEISVEESIRRRKNRK---PDRIEA---------EGIEFLERVAEGFALIAEERNWK----------VISA-DQ 191 (212)
T ss_pred CCEEEEEeCCHHHHHHHHHhcc---cCchhh---------hhHHHHHHHHHHHHHHHhcCCEE----------EEeC-CC
Confidence 4799999999999999997632 111111 11122222222222333322222 3675 58
Q ss_pred CHHHHHHHHHHHHHhhhc
Q 029455 166 TPVTIAIEALEQIEGFLK 183 (193)
Q Consensus 166 ~~~~~~~~i~~~~~~~~~ 183 (193)
+++++.++|.+.+.+.+.
T Consensus 192 ~~eeV~~~I~~~l~~~~~ 209 (212)
T PRK13974 192 SIETISNEIKETLLNNFS 209 (212)
T ss_pred CHHHHHHHHHHHHHHHHh
Confidence 999999999999887554
No 125
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=98.61 E-value=2.4e-07 Score=68.35 Aligned_cols=99 Identities=23% Similarity=0.237 Sum_probs=53.4
Q ss_pred CCCCchHHHHHHHHHhc---CC--cEeechHHHHHHhCCCCHHHHHHHhcchhhHHHHHHHHHHHhccCCcEEEeCCcee
Q 029455 1 MMGSGKTTVGKILSGVL---GY--SFFDCDTLIEQSVDGTSVAEIFKLYGEGFFREKETEVLQKLSLMRQLVVSTGGGAV 75 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l---g~--~~~d~d~~~~~~~~g~~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~vi~~g~~~v 75 (193)
+|||||||+++.|++.+ |+ .+++.|.+......+..... ......++.+. .....+...+..||.... .
T Consensus 7 ~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r~~l~~~~~~~~---~~~~~~~~~~~-~~a~~l~~~G~~VIid~~--~ 80 (149)
T cd02027 7 LSGSGKSTIARALEEKLFQRGRPVYVLDGDNVRHGLNKDLGFSR---EDREENIRRIA-EVAKLLADAGLIVIAAFI--S 80 (149)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHHhhhhccCCCc---chHHHHHHHHH-HHHHHHHhCCCEEEEccC--C
Confidence 58999999999999988 54 45677876654321111000 11112232221 122233333444444321 1
Q ss_pred eCHhhHH----hcc--CCeEEEEECCHHHHHHHHhc
Q 029455 76 TRPINWR----YMQ--KGISVWLDVPLEALAQRIAA 105 (193)
Q Consensus 76 ~~~~~~~----~l~--~~~vV~L~~~~~~~~~Rl~~ 105 (193)
.....+. .++ +..+|||++|.+++.+|..+
T Consensus 81 ~~~~~R~~~~~l~~~~~~~~i~l~~~~e~~~~R~~~ 116 (149)
T cd02027 81 PYREDREAARKIIGGGDFLEVFVDTPLEVCEQRDPK 116 (149)
T ss_pred CCHHHHHHHHHhcCCCCEEEEEEeCCHHHHHHhCch
Confidence 2222222 222 14689999999999999754
No 126
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=98.61 E-value=5.3e-07 Score=71.29 Aligned_cols=73 Identities=22% Similarity=0.247 Sum_probs=50.6
Q ss_pred eEEEEECCHHHHHHHHhccCCCCCCccccCCCCChhHHHHHHHHHHHHHHHHHHhhccceeechhhhhhcccccCCCCCH
Q 029455 88 ISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVSLENIAVKLGHKDVSSLTP 167 (193)
Q Consensus 88 ~vV~L~~~~~~~~~Rl~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~r~~~y~~~~~~i~~~~~~~~~~~iDt~~~~~ 167 (193)
.++||+|+.+++++|..+ .++..|+... +- ..+..+.-++++. |+...|+.+| |||.+++
T Consensus 85 ~iLFLeA~~~~Lv~RY~e-tRR~HPL~~~---~~-l~~~I~~ERelL~---pLk~~A~~vI------------DTs~ls~ 144 (286)
T COG1660 85 RVLFLEADDETLVRRYSE-TRRSHPLSED---GL-LLEAIAKERELLA---PLREIADLVI------------DTSELSV 144 (286)
T ss_pred eEEEEECchhHHHHHHhh-hhhcCCCCcc---Cc-HHHHHHHHHHHHH---HHHHHhhhEe------------ecccCCH
Confidence 699999999999999986 2356676543 21 1112222233332 5555688875 9999999
Q ss_pred HHHHHHHHHHHHh
Q 029455 168 VTIAIEALEQIEG 180 (193)
Q Consensus 168 ~~~~~~i~~~~~~ 180 (193)
.+..+.|...+..
T Consensus 145 ~~Lr~~i~~~f~~ 157 (286)
T COG1660 145 HELRERIRTRFLG 157 (286)
T ss_pred HHHHHHHHHHHcc
Confidence 9999999888764
No 127
>PLN02165 adenylate isopentenyltransferase
Probab=98.60 E-value=2e-07 Score=76.87 Aligned_cols=105 Identities=20% Similarity=0.311 Sum_probs=64.7
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHH--------------HHHHhCCCC---HHHHHHHhcc---hhhHHHHHHHHHHH
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTL--------------IEQSVDGTS---VAEIFKLYGE---GFFREKETEVLQKL 60 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~--------------~~~~~~g~~---~~~~~~~~~~---~~~~~~e~~~~~~l 60 (193)
|+||||||+|..||+.++..++++|.+ ..+.. |.+ +..+....+. ..|.......+..+
T Consensus 51 PTGSGKStLA~~LA~~l~~eIIsaDs~QvYkgldIgTakpt~~er~-gv~Hhli~~~~~~~~~~sv~~F~~~a~~~I~~i 129 (334)
T PLN02165 51 ATGSGKSRLSVDLATRFPSEIINSDKMQVYDGLKITTNQITIQDRR-GVPHHLLGELNPDDGELTASEFRSLASLSISEI 129 (334)
T ss_pred CCCCcHHHHHHHHHHHcCCceecCChheeECCcccccCCCCHHHHc-CCChhhhheeccccceeeHHHHHHHHHHHHHHH
Confidence 689999999999999999999999987 22222 433 1111111111 23554445566666
Q ss_pred hccCCcEEEeCCceee-----C----Hhh---------HH-hcc-CCeEEEEECCHHHHHHHHhcc
Q 029455 61 SLMRQLVVSTGGGAVT-----R----PIN---------WR-YMQ-KGISVWLDVPLEALAQRIAAV 106 (193)
Q Consensus 61 ~~~~~~vi~~g~~~v~-----~----~~~---------~~-~l~-~~~vV~L~~~~~~~~~Rl~~~ 106 (193)
...+...|.+|+.-.+ . ++. .. .++ +.+++||.++.+++.+|+.+|
T Consensus 130 ~~~~~~PI~vGGTglYi~aLl~g~~dpe~~p~~tg~~~~s~~~~~~~~~i~l~~dr~~L~~RI~~R 195 (334)
T PLN02165 130 TSRQKLPIVAGGSNSFIHALLADRFDPEIYPFSSGSSLISSDLRYDCCFIWVDVSEPVLFEYLSKR 195 (334)
T ss_pred HHCCCcEEEECChHHHHHHHHcCCCCCccChhhcCCCccccccCCCeEEEEECCCHHHHHHHHHHH
Confidence 6666666777753211 1 100 00 011 136789999999999999885
No 128
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.59 E-value=1e-06 Score=68.33 Aligned_cols=28 Identities=36% Similarity=0.421 Sum_probs=23.4
Q ss_pred CCCCchHHHHHHHHHhcC---CcEeechHHH
Q 029455 1 MMGSGKTTVGKILSGVLG---YSFFDCDTLI 28 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg---~~~~d~d~~~ 28 (193)
++||||||+++.|+..++ +.+++.|.++
T Consensus 14 ~sGsGKSTl~~~l~~~l~~~~~~~i~~D~~~ 44 (207)
T TIGR00235 14 GSGSGKTTVARKIYEQLGKLEIVIISQDNYY 44 (207)
T ss_pred CCCCCHHHHHHHHHHHhcccCCeEecccccc
Confidence 689999999999998775 5678887764
No 129
>PRK07933 thymidylate kinase; Validated
Probab=98.55 E-value=5.4e-06 Score=64.71 Aligned_cols=75 Identities=20% Similarity=0.279 Sum_probs=44.1
Q ss_pred CCeEEEEECCHHHHHHHHhccCCCC----CCccccCCCCChhHHHHHHHHHHHHHHHHHHhhccceeechhhhhhccccc
Q 029455 86 KGISVWLDVPLEALAQRIAAVGTDS----RPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVSLENIAVKLGHKD 161 (193)
Q Consensus 86 ~~~vV~L~~~~~~~~~Rl~~~~~~~----R~~~~~~~~~~~~~~~~~~~~~~~~~r~~~y~~~~~~i~~~~~~~~~~~iD 161 (193)
++++|||++|+++..+|+.+|+... ...... .. +..+++++.|.+....+. .+..+ +||
T Consensus 133 PDl~i~Ldv~~e~a~~Ri~~R~~~~~~~~~d~~E~---~~---~f~~~v~~~Y~~~~~~~~-~~~~~----------~id 195 (213)
T PRK07933 133 PDLQVLLDVPVELAAERARRRAAQDADRARDAYER---DD---GLQQRTGAVYAELAAQGW-GGPWL----------VVD 195 (213)
T ss_pred CCEEEEecCCHHHHHHHHHhhccccCCcccccccc---cH---HHHHHHHHHHHHHHHhcC-CCCeE----------EeC
Confidence 4899999999999999998753110 011111 01 123445555543322110 11222 478
Q ss_pred CCCCCHHHHHHHHHHHH
Q 029455 162 VSSLTPVTIAIEALEQI 178 (193)
Q Consensus 162 t~~~~~~~~~~~i~~~~ 178 (193)
. ..+++++.++|.+.+
T Consensus 196 a-~~~~e~v~~~i~~~~ 211 (213)
T PRK07933 196 P-DVDPAALAARLAAAL 211 (213)
T ss_pred C-CCCHHHHHHHHHHHh
Confidence 6 689999999998765
No 130
>PRK13976 thymidylate kinase; Provisional
Probab=98.55 E-value=1.6e-05 Score=61.92 Aligned_cols=75 Identities=12% Similarity=0.046 Sum_probs=46.1
Q ss_pred CCeEEEEECCHHHHHHHHhccCCCCCCccccCCCCChhHHHHHHHHHHHHHHHHHHhhccceeechhhhhhcccccCC--
Q 029455 86 KGISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVSLENIAVKLGHKDVS-- 163 (193)
Q Consensus 86 ~~~vV~L~~~~~~~~~Rl~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~r~~~y~~~~~~i~~~~~~~~~~~iDt~-- 163 (193)
++++|||++|+++..+|+.. +..... .. +..+++++.|.+....+. +..+ +||.+
T Consensus 125 PDl~i~Ldv~~e~a~~Ri~~-----~~~e~~---~~---~~l~~v~~~Y~~l~~~~~--~~~~----------~id~~~~ 181 (209)
T PRK13976 125 PDITFVLDIDIELSLSRADK-----NGYEFM---DL---EFYDKVRKGFREIVIKNP--HRCH----------VITCIDA 181 (209)
T ss_pred CCEEEEEeCCHHHHHHHhcc-----cchhcc---cH---HHHHHHHHHHHHHHHhCC--CCeE----------EEECCCC
Confidence 58999999999999999964 222211 11 234556555554332222 1111 24442
Q ss_pred CCC---HHHHHHHHHHHHHhhhc
Q 029455 164 SLT---PVTIAIEALEQIEGFLK 183 (193)
Q Consensus 164 ~~~---~~~~~~~i~~~~~~~~~ 183 (193)
..+ ++++.++|.+.+.+.++
T Consensus 182 ~~~~~~~e~v~~~i~~~i~~~~~ 204 (209)
T PRK13976 182 KDNIEDINSVHLEIVKLLHAVTK 204 (209)
T ss_pred ccCcCCHHHHHHHHHHHHHHHHH
Confidence 234 99999999999987774
No 131
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=98.54 E-value=5.4e-07 Score=69.18 Aligned_cols=28 Identities=36% Similarity=0.477 Sum_probs=22.6
Q ss_pred CCCCchHHHHHHHHHhcC---C------cEeechHHH
Q 029455 1 MMGSGKTTVGKILSGVLG---Y------SFFDCDTLI 28 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg---~------~~~d~d~~~ 28 (193)
+|||||||+|+.|+..|+ . .++..|.+.
T Consensus 7 ~sgSGKTTla~~L~~~L~~~~~~~~~~~~~~~~d~~~ 43 (194)
T PF00485_consen 7 PSGSGKTTLAKRLAQILNKRGIPAMEMDIILSLDDFY 43 (194)
T ss_dssp STTSSHHHHHHHHHHHHTTCTTTCCCSEEEEEGGGGB
T ss_pred CCCCCHHHHHHHHHHHhCccCcCccceeEEEeecccc
Confidence 689999999999999997 2 366677654
No 132
>PLN02924 thymidylate kinase
Probab=98.52 E-value=4.7e-06 Score=65.38 Aligned_cols=71 Identities=14% Similarity=0.151 Sum_probs=43.5
Q ss_pred CCeEEEEECCHHHHHHHHhccCCCCCCccccCCCCChhHHHHHHHHHHHHHHHHHHhhccceeechhhhhhcccccCCCC
Q 029455 86 KGISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVSLENIAVKLGHKDVSSL 165 (193)
Q Consensus 86 ~~~vV~L~~~~~~~~~Rl~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~r~~~y~~~~~~i~~~~~~~~~~~iDt~~~ 165 (193)
++++|||++|+++..+|.... ..| ... . +..+++++.|... ...... +||+ ..
T Consensus 136 PDlvi~Ld~~~~~a~~R~~~~--~~~--~E~---~----~~~~rv~~~Y~~l----a~~~~~-----------vIDa-~~ 188 (220)
T PLN02924 136 PDLVLYLDISPEEAAERGGYG--GER--YEK---L----EFQKKVAKRFQTL----RDSSWK-----------IIDA-SQ 188 (220)
T ss_pred CCEEEEEeCCHHHHHHHhccC--ccc--ccc---H----HHHHHHHHHHHHH----hhcCEE-----------EECC-CC
Confidence 489999999999999997531 111 111 0 1233343333221 111222 3686 59
Q ss_pred CHHHHHHHHHHHHHhhhc
Q 029455 166 TPVTIAIEALEQIEGFLK 183 (193)
Q Consensus 166 ~~~~~~~~i~~~~~~~~~ 183 (193)
+++++.++|.+.+.+.+.
T Consensus 189 sieeV~~~I~~~I~~~l~ 206 (220)
T PLN02924 189 SIEEVEKKIREVVLDTVQ 206 (220)
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 999999999998877654
No 133
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=98.49 E-value=1.3e-07 Score=67.04 Aligned_cols=17 Identities=53% Similarity=0.669 Sum_probs=16.1
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
+|||||||+|+.|++++
T Consensus 6 ~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 6 IPGSGKTTIAKELAERL 22 (129)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 58999999999999988
No 134
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=98.48 E-value=4.1e-07 Score=73.61 Aligned_cols=28 Identities=21% Similarity=0.201 Sum_probs=23.5
Q ss_pred CCCCchHHHHHHHHHhc---CCcEeechHHH
Q 029455 1 MMGSGKTTVGKILSGVL---GYSFFDCDTLI 28 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l---g~~~~d~d~~~ 28 (193)
++||||||+++.|+..+ +..+++.|++.
T Consensus 7 ~sGsGKSTl~~~L~~ll~~~~~~vi~~Dd~~ 37 (273)
T cd02026 7 DSGCGKSTFLRRLTSLFGSDLVTVICLDDYH 37 (273)
T ss_pred CCCCCHHHHHHHHHHhhCCCceEEEECcccc
Confidence 58999999999999876 46688888765
No 135
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=98.47 E-value=1.3e-05 Score=65.38 Aligned_cols=28 Identities=25% Similarity=0.386 Sum_probs=24.8
Q ss_pred CCCCchHHHHHHHHHhcCCc-EeechHHH
Q 029455 1 MMGSGKTTVGKILSGVLGYS-FFDCDTLI 28 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~-~~d~d~~~ 28 (193)
++||||||+|..||++||++ ++..|.+.
T Consensus 100 ~sgsGKStlA~~La~~l~~~~vi~~D~~r 128 (301)
T PRK04220 100 ASGVGTSTIAFELASRLGIRSVIGTDSIR 128 (301)
T ss_pred CCCCCHHHHHHHHHHHhCCCEEEechHHH
Confidence 58999999999999999997 67877765
No 136
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=98.45 E-value=2.7e-05 Score=60.55 Aligned_cols=79 Identities=23% Similarity=0.288 Sum_probs=46.4
Q ss_pred CCeEEEEECCHHHHHHHHhccCCCCCCccccCCCCChhHHHHHHHHHHHHHHHHHHhhccceeechhhhhhcccccCCCC
Q 029455 86 KGISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVSLENIAVKLGHKDVSSL 165 (193)
Q Consensus 86 ~~~vV~L~~~~~~~~~Rl~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~r~~~y~~~~~~i~~~~~~~~~~~iDt~~~ 165 (193)
+++++||++|+++.++|+.+++.. ++.... .+. +..+++++.|.+....+. ..++ +||+ +.
T Consensus 128 PD~ti~Ldv~~e~al~R~~~r~~~-~~r~E~---~~~--~f~~kvr~~Y~~la~~~~--~r~~----------vIda-~~ 188 (208)
T COG0125 128 PDLTLYLDVPPEVALERIRKRGEL-RDRFEK---EDD--EFLEKVREGYLELAAKFP--ERII----------VIDA-SR 188 (208)
T ss_pred CCEEEEEeCCHHHHHHHHHhcCCc-cchhhh---HHH--HHHHHHHHHHHHHHhhCC--CeEE----------EEEC-CC
Confidence 489999999999999999975321 121111 000 012223333322111111 1122 4786 58
Q ss_pred CHHHHHHHHHHHHHhhhc
Q 029455 166 TPVTIAIEALEQIEGFLK 183 (193)
Q Consensus 166 ~~~~~~~~i~~~~~~~~~ 183 (193)
+++++.+.|...+...+.
T Consensus 189 ~~e~v~~~i~~~l~~~l~ 206 (208)
T COG0125 189 PLEEVHEEILKILKERLG 206 (208)
T ss_pred CHHHHHHHHHHHHHHhhc
Confidence 899999999999988764
No 137
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=98.42 E-value=1.3e-05 Score=63.40 Aligned_cols=30 Identities=30% Similarity=0.418 Sum_probs=24.1
Q ss_pred CCCCchHHHHHHHHHhcCCcEe-echHHHHHH
Q 029455 1 MMGSGKTTVGKILSGVLGYSFF-DCDTLIEQS 31 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~-d~d~~~~~~ 31 (193)
+||.||||+|..||.+||+..+ .+|. +++.
T Consensus 97 asGVGkStIA~ElA~rLgI~~visTD~-IREv 127 (299)
T COG2074 97 ASGVGKSTIAGELARRLGIRSVISTDS-IREV 127 (299)
T ss_pred CCCCChhHHHHHHHHHcCCceeecchH-HHHH
Confidence 5899999999999999999755 5555 4443
No 138
>PLN02348 phosphoribulokinase
Probab=98.41 E-value=5.5e-07 Score=75.73 Aligned_cols=28 Identities=29% Similarity=0.326 Sum_probs=24.1
Q ss_pred CCCCchHHHHHHHHHhcCC--------------------cEeechHHH
Q 029455 1 MMGSGKTTVGKILSGVLGY--------------------SFFDCDTLI 28 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~--------------------~~~d~d~~~ 28 (193)
+|||||||+++.|++.||- .++++|+++
T Consensus 57 ~SGSGKSTfA~~L~~~Lg~~~~~~~~~~~~~~~l~~~~~~VI~lDDYh 104 (395)
T PLN02348 57 DSGCGKSTFMRRLTSVFGGAAKPPKGGNPDSNTLISDTTTVICLDDYH 104 (395)
T ss_pred CCCCCHHHHHHHHHHHHhhccCCCccccccccccccCceEEEEccccc
Confidence 5899999999999999862 478899876
No 139
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=98.41 E-value=2.1e-05 Score=67.55 Aligned_cols=29 Identities=28% Similarity=0.445 Sum_probs=25.2
Q ss_pred CCCCchHHHHHHHHHhcCCc-EeechHHHH
Q 029455 1 MMGSGKTTVGKILSGVLGYS-FFDCDTLIE 29 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~-~~d~d~~~~ 29 (193)
+|||||||++..||+++|+. ++++|.+..
T Consensus 263 ~~G~GKSt~a~~LA~~lg~~~ii~tD~iR~ 292 (475)
T PRK12337 263 VSGVGKSVLASALAYRLGITRIVSTDAVRE 292 (475)
T ss_pred CCCCCHHHHHHHHHHHcCCcEEeehhHHHH
Confidence 58999999999999999998 668887654
No 140
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.38 E-value=3.3e-06 Score=66.55 Aligned_cols=42 Identities=29% Similarity=0.546 Sum_probs=29.5
Q ss_pred CcEEEeCCceeeCHhhHHhccC--CeEEEEECCHHHHHHHHhcc
Q 029455 65 QLVVSTGGGAVTRPINWRYMQK--GISVWLDVPLEALAQRIAAV 106 (193)
Q Consensus 65 ~~vi~~g~~~v~~~~~~~~l~~--~~vV~L~~~~~~~~~Rl~~~ 106 (193)
..||.+|.+.......+..+.. +++|||++|.+++.+|+..|
T Consensus 138 ~ivIvEG~~~l~~~~~~~~l~~~~D~vi~v~~~~~~~~~R~~~R 181 (229)
T PRK09270 138 RLVIVEGNYLLLDEEPWRRLAGLFDFTIFLDAPAEVLRERLVAR 181 (229)
T ss_pred CEEEEcCcceeeccccHHHHHhhCCEEEEEECCHHHHHHHHHHH
Confidence 4455666555444444544442 79999999999999999874
No 141
>PRK14737 gmk guanylate kinase; Provisional
Probab=98.37 E-value=5.7e-06 Score=63.25 Aligned_cols=65 Identities=9% Similarity=0.074 Sum_probs=38.1
Q ss_pred eEEEEECC-HHHHHHHHhccCCCCCCccccCCCCChhHHHHHHHHHHHHHHHHHHhhccceeechhhhhhcccccCCCCC
Q 029455 88 ISVWLDVP-LEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVSLENIAVKLGHKDVSSLT 166 (193)
Q Consensus 88 ~vV~L~~~-~~~~~~Rl~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~r~~~y~~~~~~i~~~~~~~~~~~iDt~~~~ 166 (193)
.+|||.+| .+++.+|+.+| +.... + +....+.....+. .....+|.+| +++ +
T Consensus 118 ~~Ifi~pps~e~l~~RL~~R-----~~~s~----e---~i~~Rl~~~~~e~-~~~~~~D~vI------------~N~--d 170 (186)
T PRK14737 118 VTIFIEPPSEEEWEERLIHR-----GTDSE----E---SIEKRIENGIIEL-DEANEFDYKI------------IND--D 170 (186)
T ss_pred EEEEEECCCHHHHHHHHHhc-----CCCCH----H---HHHHHHHHHHHHH-hhhccCCEEE------------ECc--C
Confidence 68999985 68999999873 32221 0 2233343332211 1122378876 433 7
Q ss_pred HHHHHHHHHHHHH
Q 029455 167 PVTIAIEALEQIE 179 (193)
Q Consensus 167 ~~~~~~~i~~~~~ 179 (193)
.+++..++...+.
T Consensus 171 le~a~~ql~~ii~ 183 (186)
T PRK14737 171 LEDAIADLEAIIC 183 (186)
T ss_pred HHHHHHHHHHHHh
Confidence 8888888877664
No 142
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.35 E-value=6.9e-06 Score=63.31 Aligned_cols=68 Identities=18% Similarity=0.108 Sum_probs=39.0
Q ss_pred CeEEEE-ECCHHHHHHHHhccCCCCCCccccCCCCChhHHHHHHHHHHHHHHHHHHhhccceeechhhhhhcccccCCCC
Q 029455 87 GISVWL-DVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVSLENIAVKLGHKDVSSL 165 (193)
Q Consensus 87 ~~vV~L-~~~~~~~~~Rl~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~r~~~y~~~~~~i~~~~~~~~~~~iDt~~~ 165 (193)
..+|++ .++.+++.+|+..| ..... + .....+.....+ ...+..+|.+| ++ .
T Consensus 117 ~~~I~i~~~s~~~l~~Rl~~R-----~~~~~----~---~i~~rl~~~~~~-~~~~~~~d~vi-----------~n---~ 169 (205)
T PRK00300 117 AVSIFILPPSLEELERRLRGR-----GTDSE----E---VIARRLAKAREE-IAHASEYDYVI-----------VN---D 169 (205)
T ss_pred cEEEEEECcCHHHHHHHHHhc-----CCCCH----H---HHHHHHHHHHHH-HHhHHhCCEEE-----------EC---C
Confidence 355666 46688999999874 21111 1 122333332222 22334467776 22 2
Q ss_pred CHHHHHHHHHHHHHhh
Q 029455 166 TPVTIAIEALEQIEGF 181 (193)
Q Consensus 166 ~~~~~~~~i~~~~~~~ 181 (193)
+++++..++...+...
T Consensus 170 ~~e~~~~~l~~il~~~ 185 (205)
T PRK00300 170 DLDTALEELKAIIRAE 185 (205)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 7999999999888765
No 143
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=98.28 E-value=2.7e-06 Score=66.72 Aligned_cols=28 Identities=21% Similarity=0.485 Sum_probs=23.1
Q ss_pred CCCCchHHHHHHHHHhcC-------CcEeechHHH
Q 029455 1 MMGSGKTTVGKILSGVLG-------YSFFDCDTLI 28 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg-------~~~~d~d~~~ 28 (193)
++||||||+++.|+..+. +.+++.|.++
T Consensus 7 ~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~ 41 (220)
T cd02025 7 SVAVGKSTTARVLQALLSRWPDHPNVELITTDGFL 41 (220)
T ss_pred CCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCccc
Confidence 689999999999998873 4567888765
No 144
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=98.27 E-value=7.2e-06 Score=61.89 Aligned_cols=21 Identities=29% Similarity=0.055 Sum_probs=17.6
Q ss_pred CCCCchHHHHHHHHHhcCCcE
Q 029455 1 MMGSGKTTVGKILSGVLGYSF 21 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~ 21 (193)
|+||||||+++.|++.++..+
T Consensus 9 ~~GsGKsTl~~~L~~~~~~~~ 29 (180)
T TIGR03263 9 PSGVGKSTLVKALLEEDPNLK 29 (180)
T ss_pred CCCCCHHHHHHHHHccCcccc
Confidence 799999999999998765433
No 145
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=98.26 E-value=4.2e-06 Score=73.30 Aligned_cols=84 Identities=18% Similarity=0.175 Sum_probs=54.5
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHHHHHhCCCCHHHHHHHhcchhhHHHHHHHHHHHhccCCcEEEeCCceeeCHhh
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFREKETEVLQKLSLMRQLVVSTGGGAVTRPIN 80 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~~~~~~g~~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~vi~~g~~~v~~~~~ 80 (193)
+|||||||+|+.+++.+|+.+++.|.+-. +..+...+...+....++||+.. ......
T Consensus 377 ~pGSGKST~A~~l~~~~g~~~vn~D~lg~-------------------~~~~~~~a~~~L~~G~sVVIDaT---n~~~~~ 434 (526)
T TIGR01663 377 FPGAGKSHFCKKFFQPAGYKHVNADTLGS-------------------TQNCLTACERALDQGKRCAIDNT---NPDAAS 434 (526)
T ss_pred CCCCCHHHHHHHHHHHcCCeEECcHHHHH-------------------HHHHHHHHHHHHhCCCcEEEECC---CCCHHH
Confidence 59999999999999999999999997610 11111222233444445566532 233333
Q ss_pred HHh---c-c-C---CeEEEEECCHHHHHHHHhcc
Q 029455 81 WRY---M-Q-K---GISVWLDVPLEALAQRIAAV 106 (193)
Q Consensus 81 ~~~---l-~-~---~~vV~L~~~~~~~~~Rl~~~ 106 (193)
+.. + + . -..||+++|.+++.+|+..|
T Consensus 435 R~~~i~lAk~~gv~v~~i~~~~p~e~~~~Rn~~R 468 (526)
T TIGR01663 435 RAKFLQCARAAGIPCRCFLFNAPLAQAKHNIAFR 468 (526)
T ss_pred HHHHHHHHHHcCCeEEEEEeCCCHHHHHHHHHhh
Confidence 321 1 1 1 36899999999999999874
No 146
>PRK07429 phosphoribulokinase; Provisional
Probab=98.19 E-value=1.3e-05 Score=66.42 Aligned_cols=28 Identities=32% Similarity=0.345 Sum_probs=24.2
Q ss_pred CCCCchHHHHHHHHHhcC---CcEeechHHH
Q 029455 1 MMGSGKTTVGKILSGVLG---YSFFDCDTLI 28 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg---~~~~d~d~~~ 28 (193)
++||||||+++.|++.++ +.+++.|+++
T Consensus 16 ~SGSGKSTla~~L~~ll~~~~~~vi~~Dd~~ 46 (327)
T PRK07429 16 DSGCGKTTFLRGLADLLGEELVTVICTDDYH 46 (327)
T ss_pred CCCCCHHHHHHHHHhHhccCceEEEEecccc
Confidence 589999999999999887 5678888864
No 147
>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]
Probab=98.17 E-value=3.5e-06 Score=61.69 Aligned_cols=148 Identities=21% Similarity=0.210 Sum_probs=76.7
Q ss_pred CCCCchHHHHHHHHHhcC-----CcEeechHHHHHHhCCCCHHHHHHHhcchhhHHHHHHHHHHHhccCCcEEEe-CCce
Q 029455 1 MMGSGKTTVGKILSGVLG-----YSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFREKETEVLQKLSLMRQLVVST-GGGA 74 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg-----~~~~d~d~~~~~~~~g~~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~vi~~-g~~~ 74 (193)
++||||||+|-.|.+.|- .-.+|.|.+..-. +..+. +-.+++.++.|++- .+ ..+.. ..++|+- +.-.
T Consensus 39 LSgSGKStlACaL~q~L~qrgkl~Y~LDGDNvRhGL--N~DL~-F~a~dR~ENIRRig-eV-aKLFA-Dag~iciaSlIS 112 (207)
T KOG0635|consen 39 LSGSGKSTLACALSQALLQRGKLTYILDGDNVRHGL--NKDLG-FKAEDRNENIRRIG-EV-AKLFA-DAGVICIASLIS 112 (207)
T ss_pred cCCCCchhHHHHHHHHHHhcCceEEEecCccccccc--ccccC-cchhhhhhhHHHHH-HH-HHHHh-ccceeeeehhcC
Confidence 589999999999988763 2356888865422 11110 11123344455442 22 22332 2334432 2111
Q ss_pred ee---CHhhHHhccC--CeEEEEECCHHHHHHHHhccCCCCCCccccCCCCChhHHHHHHHHHHHHHHHHHHhh---ccc
Q 029455 75 VT---RPINWRYMQK--GISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYAN---ANA 146 (193)
Q Consensus 75 v~---~~~~~~~l~~--~~vV~L~~~~~~~~~Rl~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~r~~~y~~---~~~ 146 (193)
++ +...+++++. ...||+++|.+++.+|--+ ++++..+.+ .+..+-. -...|+. +..
T Consensus 113 PYR~dRdacRel~~~~~FiEvfmdvpl~vcE~RDPK------GLYK~ARaG--------kIKgFTG-IddPYEaP~~cEi 177 (207)
T KOG0635|consen 113 PYRKDRDACRELLPEGDFIEVFMDVPLEVCEARDPK------GLYKLARAG--------KIKGFTG-IDDPYEAPLNCEI 177 (207)
T ss_pred chhccHHHHHHhccCCCeEEEEecCcHHHhhccCch------hHHHHHhcc--------ccccccc-CCCcccCCCCcEE
Confidence 22 2334556664 4689999999999998643 222221111 1111111 1234553 334
Q ss_pred eeechhhhhhcccccCCCCCHHHHHHHHHHHHHh
Q 029455 147 RVSLENIAVKLGHKDVSSLTPVTIAIEALEQIEG 180 (193)
Q Consensus 147 ~i~~~~~~~~~~~iDt~~~~~~~~~~~i~~~~~~ 180 (193)
++. ..+..+|++.++.|..++..
T Consensus 178 ~l~-----------~~~~~sp~~mae~iv~YL~~ 200 (207)
T KOG0635|consen 178 VLK-----------SHESSSPEEMAEIIVSYLDN 200 (207)
T ss_pred EEc-----------cCCCCCHHHHHHHHHHHHhh
Confidence 442 23456688899999998753
No 148
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.16 E-value=2.6e-05 Score=60.12 Aligned_cols=19 Identities=21% Similarity=0.335 Sum_probs=17.2
Q ss_pred CeEEEEECCHHHHHHHHhc
Q 029455 87 GISVWLDVPLEALAQRIAA 105 (193)
Q Consensus 87 ~~vV~L~~~~~~~~~Rl~~ 105 (193)
.-+||+.||+|+|.+|-.+
T Consensus 103 ~ciIyl~~plDtc~rrN~e 121 (261)
T COG4088 103 WCIIYLRTPLDTCLRRNRE 121 (261)
T ss_pred eEEEEEccCHHHHHHhhcc
Confidence 4799999999999999965
No 149
>PRK05439 pantothenate kinase; Provisional
Probab=98.14 E-value=7.7e-06 Score=67.23 Aligned_cols=29 Identities=21% Similarity=0.424 Sum_probs=23.8
Q ss_pred CCCCchHHHHHHHHHhcC-------CcEeechHHHH
Q 029455 1 MMGSGKTTVGKILSGVLG-------YSFFDCDTLIE 29 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg-------~~~~d~d~~~~ 29 (193)
+|||||||+|+.|++.++ ..++++|+++.
T Consensus 94 ~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy~ 129 (311)
T PRK05439 94 SVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFLY 129 (311)
T ss_pred CCCCCHHHHHHHHHHHHHhhCCCCceEEEecccccc
Confidence 589999999999998664 35788888763
No 150
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=98.11 E-value=6e-05 Score=57.35 Aligned_cols=17 Identities=29% Similarity=0.186 Sum_probs=15.7
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
|+||||+|+++.|.+..
T Consensus 10 psg~GK~tl~~~L~~~~ 26 (184)
T smart00072 10 PSGVGKGTLLAELIQEI 26 (184)
T ss_pred CCCCCHHHHHHHHHhcC
Confidence 79999999999998875
No 151
>PRK14738 gmk guanylate kinase; Provisional
Probab=98.10 E-value=4.5e-05 Score=59.18 Aligned_cols=22 Identities=5% Similarity=-0.173 Sum_probs=17.8
Q ss_pred ccCCCCCHHHHHHHHHHHHHhhh
Q 029455 160 KDVSSLTPVTIAIEALEQIEGFL 182 (193)
Q Consensus 160 iDt~~~~~~~~~~~i~~~~~~~~ 182 (193)
||+ ..+++++.++|.+.+....
T Consensus 175 Id~-~~~~e~v~~~i~~~l~~~~ 196 (206)
T PRK14738 175 VNP-EDRLDEAVAQIMAIISAEK 196 (206)
T ss_pred ECC-CCCHHHHHHHHHHHHHHHh
Confidence 675 4789999999999987653
No 152
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=98.07 E-value=9.2e-05 Score=56.12 Aligned_cols=68 Identities=16% Similarity=0.097 Sum_probs=39.9
Q ss_pred CCeEEEEECC-HHHHHHHHhccCCCCCCccccCCCCChhHHHHHHHHHHHHHHHHHHhhccceeechhhhhhcccccCCC
Q 029455 86 KGISVWLDVP-LEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVSLENIAVKLGHKDVSS 164 (193)
Q Consensus 86 ~~~vV~L~~~-~~~~~~Rl~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~r~~~y~~~~~~i~~~~~~~~~~~iDt~~ 164 (193)
+...|||.+| .+++.+||.. |+.... +....++.+... ....+...|.+| | +
T Consensus 114 ~~v~IFi~pPs~eeL~~RL~~-----Rgtds~-------e~I~~Rl~~a~~-Ei~~~~~fdyvi-----------v---N 166 (191)
T COG0194 114 NAVSIFILPPSLEELERRLKG-----RGTDSE-------EVIARRLENAKK-EISHADEFDYVI-----------V---N 166 (191)
T ss_pred CeEEEEEcCCCHHHHHHHHHc-----cCCCCH-------HHHHHHHHHHHH-HHHHHHhCCEEE-----------E---C
Confidence 3578898887 5778888875 432211 123444444332 234455578877 2 3
Q ss_pred CCHHHHHHHHHHHHHh
Q 029455 165 LTPVTIAIEALEQIEG 180 (193)
Q Consensus 165 ~~~~~~~~~i~~~~~~ 180 (193)
-+.+.++.++...+..
T Consensus 167 dd~e~a~~~l~~ii~a 182 (191)
T COG0194 167 DDLEKALEELKSIILA 182 (191)
T ss_pred ccHHHHHHHHHHHHHH
Confidence 4577787777766543
No 153
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=98.03 E-value=9.1e-06 Score=61.72 Aligned_cols=29 Identities=41% Similarity=0.407 Sum_probs=25.3
Q ss_pred CCCCchHHHHHHHHHhc-----CCcEeechHHHH
Q 029455 1 MMGSGKTTVGKILSGVL-----GYSFFDCDTLIE 29 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l-----g~~~~d~d~~~~ 29 (193)
+|||||||+|+.|++.+ +..+++.|+++.
T Consensus 7 ~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~ 40 (179)
T cd02028 7 PSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYV 40 (179)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCEEEEehhhccc
Confidence 58999999999999986 357899999885
No 154
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=97.96 E-value=6.1e-05 Score=58.02 Aligned_cols=100 Identities=20% Similarity=0.292 Sum_probs=50.0
Q ss_pred CCCCchHHHHHHHHHhc---CCcEeechHHHHHHhCCCCHHHHHHHhcchhh-------HHHHHHHHHHHhccC-CcEEE
Q 029455 1 MMGSGKTTVGKILSGVL---GYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFF-------REKETEVLQKLSLMR-QLVVS 69 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l---g~~~~d~d~~~~~~~~g~~~~~~~~~~~~~~~-------~~~e~~~~~~l~~~~-~~vi~ 69 (193)
+|||||||++..+.+.+ ++.+++.|.+.... +...++......... ..+...++..+.... ++++.
T Consensus 23 ~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~~---p~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~a~~~~~nii~E 99 (199)
T PF06414_consen 23 QPGSGKSTLARQLLEEFGGGGIVVIDADEFRQFH---PDYDELLKADPDEASELTQKEASRLAEKLIEYAIENRYNIIFE 99 (199)
T ss_dssp -TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGGS---TTHHHHHHHHCCCTHHHHHHHHHHHHHHHHHHHHHCT--EEEE
T ss_pred CCCCCHHHHHHHhhhhccCCCeEEEehHHHHHhc---cchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCEEEe
Confidence 59999999999999987 68899999974321 111222221111111 111222344443333 44443
Q ss_pred eCCceeeCHhhH----HhccC-C---eEEEEECCHHHHHHHHhcc
Q 029455 70 TGGGAVTRPINW----RYMQK-G---ISVWLDVPLEALAQRIAAV 106 (193)
Q Consensus 70 ~g~~~v~~~~~~----~~l~~-~---~vV~L~~~~~~~~~Rl~~~ 106 (193)
+ ....++.. ..++. + .++++.+|++....|+..|
T Consensus 100 -~--tl~~~~~~~~~~~~~k~~GY~v~l~~v~~~~e~s~~rv~~R 141 (199)
T PF06414_consen 100 -G--TLSNPSKLRKLIREAKAAGYKVELYYVAVPPELSIERVRQR 141 (199)
T ss_dssp -----TTSSHHHHHHHHHHHCTT-EEEEEEE---HHHHHHHHHHH
T ss_pred -c--CCCChhHHHHHHHHHHcCCceEEEEEEECCHHHHHHHHHHH
Confidence 3 12222222 23332 2 6788999999999999876
No 155
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=97.96 E-value=3.6e-05 Score=62.19 Aligned_cols=100 Identities=21% Similarity=0.135 Sum_probs=46.8
Q ss_pred CCCCchHHHHHHHHHhc---C--CcEeechHHHHHHhCCCCHHHHHHHhcchhhHHHHHHHHHHHhccCCcEEEeCCcee
Q 029455 1 MMGSGKTTVGKILSGVL---G--YSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFREKETEVLQKLSLMRQLVVSTGGGAV 75 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l---g--~~~~d~d~~~~~~~~g~~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~vi~~g~~~v 75 (193)
.|||||||+|+.|++.+ + ..+++-+.+. ..++. +.....+...|..-...+.+.+.....||..+..+.
T Consensus 9 ~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~--~~~~~----y~~~~~Ek~~R~~l~s~v~r~ls~~~iVI~Dd~nYi 82 (270)
T PF08433_consen 9 LPCSGKTTRAKELKKYLEEKGKEVVIISDDSLG--IDRND----YADSKKEKEARGSLKSAVERALSKDTIVILDDNNYI 82 (270)
T ss_dssp -TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH---TTSS----S--GGGHHHHHHHHHHHHHHHHTT-SEEEE-S---S
T ss_pred CCCCcHHHHHHHHHHHHHhcCCEEEEEcccccc--cchhh----hhchhhhHHHHHHHHHHHHHhhccCeEEEEeCCchH
Confidence 59999999999999864 2 3456655543 11011 111111222222111122233334456665553211
Q ss_pred --eCHhhHHhcc--C--CeEEEEECCHHHHHHHHhcc
Q 029455 76 --TRPINWRYMQ--K--GISVWLDVPLEALAQRIAAV 106 (193)
Q Consensus 76 --~~~~~~~~l~--~--~~vV~L~~~~~~~~~Rl~~~ 106 (193)
++-+.+..-+ . ..+||+.||.+.+.+|-.+|
T Consensus 83 Kg~RYelyclAr~~~~~~c~i~~~~~~e~~~~~N~~R 119 (270)
T PF08433_consen 83 KGMRYELYCLARAYGTTFCVIYCDCPLETCLQRNSKR 119 (270)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEEEE--HHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCEEEEEECCCHHHHHHhhhcc
Confidence 0111111112 1 47899999999999999874
No 156
>KOG3078 consensus Adenylate kinase [Nucleotide transport and metabolism]
Probab=97.93 E-value=0.00011 Score=57.87 Aligned_cols=103 Identities=22% Similarity=0.228 Sum_probs=59.2
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHHHHHh-CCCC----HHHHHHHhcchhhHHHHHHHHHHHhccC---CcEEEeCC
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQSV-DGTS----VAEIFKLYGEGFFREKETEVLQKLSLMR---QLVVSTGG 72 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~~~~~-~g~~----~~~~~~~~~~~~~~~~e~~~~~~l~~~~---~~vi~~g~ 72 (193)
+|||||+|+|.+|++.++..++.+.++.++.. .+.. +.+++. .|.-..-++-..++....... ...+..|
T Consensus 23 ~pg~gkgt~a~~l~~~~~~~hl~tGdllr~~ia~~telg~~~~~~~~-~g~lvpDeiv~~~l~~~l~~~~~~~~~ildg- 100 (235)
T KOG3078|consen 23 APGSGKGTQAPRLTKNFGVIHISTGDLLRDEIASGTELGKEAKEAID-KGKLVPDEVVVRLLEKRLENPRCQKGFILDG- 100 (235)
T ss_pred CCCCCCCccCHHHHHhcCCccchhHHHHHHHHhccCcHHHHHHHHHH-hcCcCcHHHHHHHHHhhccccccccccccCC-
Confidence 69999999999999999999999999988754 2222 222221 222221122112222222211 1122222
Q ss_pred ceeeCHh-hHHhcc----CCeEEEEECCHHHHHHHHhcc
Q 029455 73 GAVTRPI-NWRYMQ----KGISVWLDVPLEALAQRIAAV 106 (193)
Q Consensus 73 ~~v~~~~-~~~~l~----~~~vV~L~~~~~~~~~Rl~~~ 106 (193)
++.... ...... .+.||.|.+|.+.+.+|+..|
T Consensus 101 -~Prt~~qa~~l~~~~~~~d~Vi~l~vp~~~L~~ri~~r 138 (235)
T KOG3078|consen 101 -FPRTVQQAEELLDRIAQIDLVINLKVPEEVLVDRITGR 138 (235)
T ss_pred -CCcchHHHHHHHHccCCcceEEEecCCHHHHHHHHhcc
Confidence 222111 111122 279999999999999999875
No 157
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=97.92 E-value=1.1e-05 Score=65.78 Aligned_cols=28 Identities=25% Similarity=0.496 Sum_probs=21.7
Q ss_pred CCCCchHHHHHHHHHhcC-------CcEeechHHH
Q 029455 1 MMGSGKTTVGKILSGVLG-------YSFFDCDTLI 28 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg-------~~~~d~d~~~ 28 (193)
++||||||+++.|+..+. +.+++.|.+.
T Consensus 70 ~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~ 104 (290)
T TIGR00554 70 SVAVGKSTTARILQALLSRWPEHRKVELITTDGFL 104 (290)
T ss_pred CCCCCHHHHHHHHHHHHhhcCCCCceEEEeccccc
Confidence 689999999998876653 4567778765
No 158
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=97.87 E-value=0.00015 Score=58.25 Aligned_cols=29 Identities=21% Similarity=0.375 Sum_probs=24.5
Q ss_pred CCCCchHHHHHHHHHhcC-----CcEeechHHHH
Q 029455 1 MMGSGKTTVGKILSGVLG-----YSFFDCDTLIE 29 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg-----~~~~d~d~~~~ 29 (193)
.+||||||+++.|++.++ ..+++.|.+++
T Consensus 7 ~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr 40 (277)
T cd02029 7 SSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHR 40 (277)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCceEEEecccccc
Confidence 489999999999997764 56899998875
No 159
>COG4639 Predicted kinase [General function prediction only]
Probab=97.84 E-value=0.00018 Score=53.04 Aligned_cols=98 Identities=21% Similarity=0.147 Sum_probs=54.4
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHHHHHhCCCCHHHHHHHhc-chhhHHHHHHHHHHHhccCCcEEEeCCceeeCHh
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYG-EGFFREKETEVLQKLSLMRQLVVSTGGGAVTRPI 79 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~~~~~~g~~~~~~~~~~~-~~~~~~~e~~~~~~l~~~~~~vi~~g~~~v~~~~ 79 (193)
+|||||||.++.. -+.+.+++.|++.... |....+...... ...+..+...+-+.+....-.||.. .-+.++
T Consensus 10 ~~~sGKsT~ak~n--~~~~~~lsld~~r~~l--g~~~~~e~sqk~~~~~~~~l~~~l~qrl~~Gk~tiidA---tn~rr~ 82 (168)
T COG4639 10 ASGSGKSTFAKEN--FLQNYVLSLDDLRLLL--GVSASKENSQKNDELVWDILYKQLEQRLRRGKFTIIDA---TNLRRE 82 (168)
T ss_pred CCCCchhHHHHHh--CCCcceecHHHHHHHh--hhchhhhhccccHHHHHHHHHHHHHHHHHcCCeEEEEc---ccCCHH
Confidence 5899999999975 3678999999976544 322111110000 1122222222222333333345542 234455
Q ss_pred hHHhcc------C--CeEEEEECCHHHHHHHHhc
Q 029455 80 NWRYMQ------K--GISVWLDVPLEALAQRIAA 105 (193)
Q Consensus 80 ~~~~l~------~--~~vV~L~~~~~~~~~Rl~~ 105 (193)
++..+. . ...||++.|...|.+|...
T Consensus 83 ~r~~l~~La~~y~~~~~~ivfdtp~~~c~aRNk~ 116 (168)
T COG4639 83 DRRKLIDLAKAYGYKIYAIVFDTPLELCLARNKL 116 (168)
T ss_pred HHHHHHHHHHHhCCeEEEEEEeCCHHHHHHHhhc
Confidence 553321 1 3679999999999999863
No 160
>COG3896 Chloramphenicol 3-O-phosphotransferase [Defense mechanisms]
Probab=97.81 E-value=0.0003 Score=52.07 Aligned_cols=63 Identities=30% Similarity=0.193 Sum_probs=38.7
Q ss_pred eEEEEECCHHHHHHHHhccCCCCCCccccCCCCChhHHHHHHHHHHHHHHHHHHhhccceeechhhhhhcccccCCCCCH
Q 029455 88 ISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVSLENIAVKLGHKDVSSLTP 167 (193)
Q Consensus 88 ~vV~L~~~~~~~~~Rl~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~r~~~y~~~~~~i~~~~~~~~~~~iDt~~~~~ 167 (193)
.+|=+.||.+++.+|-..+. .|. |+ +.+- .|+.++.-+ .|++.+|||..+|
T Consensus 142 ~~VGV~~p~E~~~~Re~rr~--dR~------pG------~~rg---------~~r~vHa~~------~YDlevDTS~~tp 192 (205)
T COG3896 142 WMVGVHVPDEEGARRELRRG--DRH------PG------WNRG---------SARAVHADA------EYDLEVDTSATTP 192 (205)
T ss_pred EEEEeeccHHHHHHHHhhcC--CcC------cc------hhhh---------hHHHhcCCc------ceeeeecccCCCH
Confidence 46668999999999887542 222 12 1111 122211111 2344579999999
Q ss_pred HHHHHHHHHHHH
Q 029455 168 VTIAIEALEQIE 179 (193)
Q Consensus 168 ~~~~~~i~~~~~ 179 (193)
.|++.+|.+.++
T Consensus 193 ~EcAr~i~~r~q 204 (205)
T COG3896 193 HECAREIHERYQ 204 (205)
T ss_pred HHHHHHHHHHhc
Confidence 999999988764
No 161
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=97.78 E-value=7.2e-05 Score=56.79 Aligned_cols=18 Identities=39% Similarity=0.401 Sum_probs=16.4
Q ss_pred CCCCchHHHHHHHHHhcC
Q 029455 1 MMGSGKTTVGKILSGVLG 18 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg 18 (193)
|+|||||||++.|.+.++
T Consensus 10 psg~GK~~l~~~L~~~~~ 27 (183)
T PF00625_consen 10 PSGSGKSTLAKRLIQEFP 27 (183)
T ss_dssp STTSSHHHHHHHHHHHST
T ss_pred CCCCCHHHHHHHHHHhcc
Confidence 789999999999998775
No 162
>PRK15453 phosphoribulokinase; Provisional
Probab=97.74 E-value=0.0002 Score=58.00 Aligned_cols=29 Identities=21% Similarity=0.372 Sum_probs=24.4
Q ss_pred CCCCchHHHHHHHHHhcC-----CcEeechHHHH
Q 029455 1 MMGSGKTTVGKILSGVLG-----YSFFDCDTLIE 29 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg-----~~~~d~d~~~~ 29 (193)
.|||||||+++.|++.++ ..+++.|.+++
T Consensus 13 ~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh~ 46 (290)
T PRK15453 13 SSGAGTTTVKRAFEKIFRRENINAAVVEGDSFHR 46 (290)
T ss_pred CCCCCHHHHHHHHHHHHhhcCCCeEEEecccccc
Confidence 489999999999998774 56789998874
No 163
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=97.64 E-value=8.8e-05 Score=59.45 Aligned_cols=44 Identities=16% Similarity=0.370 Sum_probs=32.3
Q ss_pred CCcEEEeCCceeeCHhhHHhccC--CeEEEEECCHHHHHHHHhccC
Q 029455 64 RQLVVSTGGGAVTRPINWRYMQK--GISVWLDVPLEALAQRIAAVG 107 (193)
Q Consensus 64 ~~~vi~~g~~~v~~~~~~~~l~~--~~vV~L~~~~~~~~~Rl~~~~ 107 (193)
.+.+|..|.+.....+.|-.+.. ++.||++++.+.+.+|+.+|.
T Consensus 187 pdIlI~EG~nvLq~~~p~~~~sdffDfSIyvDa~~~~le~wyi~Rf 232 (283)
T COG1072 187 PDILIVEGNNVLQDGEPWLFLSDFFDFSIYVDADEELLEERYIERF 232 (283)
T ss_pred CCEEEEechhhhcCCCccccccccceEEEEecCCHHHHHHHHHHHH
Confidence 45667777655555555545554 799999999999999999853
No 164
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.64 E-value=4e-05 Score=54.30 Aligned_cols=25 Identities=40% Similarity=0.743 Sum_probs=21.8
Q ss_pred CCCCchHHHHHHHHHhcCCcEeech
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCD 25 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d 25 (193)
|||+||||+++.+++.++.+++..+
T Consensus 6 ~~G~GKT~l~~~la~~l~~~~~~i~ 30 (132)
T PF00004_consen 6 PPGTGKTTLARALAQYLGFPFIEID 30 (132)
T ss_dssp STTSSHHHHHHHHHHHTTSEEEEEE
T ss_pred cCCCCeeHHHHHHHhhccccccccc
Confidence 7999999999999999998875443
No 165
>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=97.62 E-value=0.00079 Score=50.06 Aligned_cols=89 Identities=20% Similarity=0.190 Sum_probs=52.8
Q ss_pred cCCcEEEeCCceeeCHhhHHhccCCeEEEEECCHHHHHHHHhccCCCCCCccccCCCCChhHHHHHHHHHHHHHHHHHHh
Q 029455 63 MRQLVVSTGGGAVTRPINWRYMQKGISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYA 142 (193)
Q Consensus 63 ~~~~vi~~g~~~v~~~~~~~~l~~~~vV~L~~~~~~~~~Rl~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~r~~~y~ 142 (193)
.+..|+.-|.- -.-++.+..+..-++|.|+++++++.+||.+|+ |.. .+.+...+ .|...|.
T Consensus 93 ~G~vvl~NgSR-a~Lp~arrry~~Llvv~ita~p~VLaqRL~~RG---REs-------------~eeI~aRL-~R~a~~~ 154 (192)
T COG3709 93 AGDVVLVNGSR-AVLPQARRRYPQLLVVCITASPEVLAQRLAERG---RES-------------REEILARL-ARAARYT 154 (192)
T ss_pred CCCEEEEeccH-hhhHHHHHhhhcceeEEEecCHHHHHHHHHHhc---cCC-------------HHHHHHHH-Hhhcccc
Confidence 34455554432 222333433334579999999999999999853 431 23343333 2444555
Q ss_pred h--ccceeechhhhhhcccccCCCCCHHHHHHHHHHHHHhh
Q 029455 143 N--ANARVSLENIAVKLGHKDVSSLTPVTIAIEALEQIEGF 181 (193)
Q Consensus 143 ~--~~~~i~~~~~~~~~~~iDt~~~~~~~~~~~i~~~~~~~ 181 (193)
. .|++ .||+| ...+...+..+..+.+.
T Consensus 155 ~~~~dv~-----------~idNs-G~l~~ag~~ll~~l~~~ 183 (192)
T COG3709 155 AGPGDVT-----------TIDNS-GELEDAGERLLALLHQD 183 (192)
T ss_pred cCCCCeE-----------EEcCC-CcHHHHHHHHHHHHHhh
Confidence 3 2333 47875 78888888887777643
No 166
>PHA00729 NTP-binding motif containing protein
Probab=97.60 E-value=0.0004 Score=54.54 Aligned_cols=22 Identities=18% Similarity=0.142 Sum_probs=19.5
Q ss_pred CeEEEEECCHHHHHHHHhccCC
Q 029455 87 GISVWLDVPLEALAQRIAAVGT 108 (193)
Q Consensus 87 ~~vV~L~~~~~~~~~Rl~~~~~ 108 (193)
..++++.++++.+.+|+++|+.
T Consensus 120 ~l~il~~ls~edL~~~Lr~Rg~ 141 (226)
T PHA00729 120 SAVIFTTPSPEDLAFYLREKGW 141 (226)
T ss_pred cEEEEecCCHHHHHHHHHhCCC
Confidence 6899999999999999998653
No 167
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=97.49 E-value=0.00015 Score=61.74 Aligned_cols=43 Identities=23% Similarity=0.397 Sum_probs=31.7
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechH--HHH-HHhCCCCHHHHHHHh
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDT--LIE-QSVDGTSVAEIFKLY 44 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~--~~~-~~~~g~~~~~~~~~~ 44 (193)
||||||||+|+.||+.++.+++..|. ++. ... |...+.++...
T Consensus 55 ppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~v-G~dvE~i~r~l 100 (441)
T TIGR00390 55 PTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYV-GRDVESMVRDL 100 (441)
T ss_pred CCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcc-cCCHHHHHHHH
Confidence 79999999999999999999998884 432 123 55555554433
No 168
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=97.46 E-value=7e-05 Score=55.70 Aligned_cols=27 Identities=37% Similarity=0.655 Sum_probs=25.4
Q ss_pred CCCCchHHHHHHHHHhcC-CcEeechHH
Q 029455 1 MMGSGKTTVGKILSGVLG-YSFFDCDTL 27 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg-~~~~d~d~~ 27 (193)
.+||||||+|..|++-+| |.++..|++
T Consensus 7 tiGCGKTTva~aL~~LFg~wgHvQnDnI 34 (168)
T PF08303_consen 7 TIGCGKTTVALALSNLFGEWGHVQNDNI 34 (168)
T ss_pred CCCcCHHHHHHHHHHHcCCCCccccCCC
Confidence 379999999999999999 999999997
No 169
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.44 E-value=0.001 Score=58.79 Aligned_cols=100 Identities=25% Similarity=0.407 Sum_probs=58.1
Q ss_pred CCCCchHHHHHHHHHhcCCcEee--chHHHHHHhCCCC---HHHHHHHh-------------------cchhhHHHHHHH
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFD--CDTLIEQSVDGTS---VAEIFKLY-------------------GEGFFREKETEV 56 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d--~d~~~~~~~~g~~---~~~~~~~~-------------------~~~~~~~~e~~~ 56 (193)
|||||||.+|+.+|.++|+||+. +.+++.-+. |.+ +.++|... ++..-+++++++
T Consensus 231 PPGCGKT~lA~AiAgel~vPf~~isApeivSGvS-GESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRi 309 (802)
T KOG0733|consen 231 PPGCGKTSLANAIAGELGVPFLSISAPEIVSGVS-GESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRI 309 (802)
T ss_pred CCCccHHHHHHHHhhhcCCceEeecchhhhcccC-cccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHH
Confidence 79999999999999999999986 445554333 333 22333221 112235667776
Q ss_pred HHHHhc-------c---CCcEEEeCC-c--eeeCHhhHHhcc---C-CeEEEEECCHHHHHHHHhc
Q 029455 57 LQKLSL-------M---RQLVVSTGG-G--AVTRPINWRYMQ---K-GISVWLDVPLEALAQRIAA 105 (193)
Q Consensus 57 ~~~l~~-------~---~~~vi~~g~-~--~v~~~~~~~~l~---~-~~vV~L~~~~~~~~~Rl~~ 105 (193)
..+++. . +.-|+.-|. + -.+++. |+ + +..|-|.+|.++..+++.+
T Consensus 310 VaQLlt~mD~l~~~~~~g~~VlVIgATnRPDslDpa----LRRaGRFdrEI~l~vP~e~aR~~IL~ 371 (802)
T KOG0733|consen 310 VAQLLTSMDELSNEKTKGDPVLVIGATNRPDSLDPA----LRRAGRFDREICLGVPSETAREEILR 371 (802)
T ss_pred HHHHHHhhhcccccccCCCCeEEEecCCCCcccCHH----HhccccccceeeecCCchHHHHHHHH
Confidence 665542 1 122332221 1 112222 32 2 6899999999887777654
No 170
>PF01712 dNK: Deoxynucleoside kinase; InterPro: IPR002624 This family consists of various deoxynucleoside kinases including cytidine (2.7.1.74 from EC), guanosine (2.7.1.113 from EC), adenosine (2.7.1.76 from EC) and thymidine kinase (2.7.1.21 from EC, which also phosphorylates deoxyuridine and deoxycytosine. These enzymes catalyse the production of deoxynucleotide 5'-monophosphate from a deoxynucleoside, using ATP and yielding ADP in the process.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006139 nucleobase-containing compound metabolic process; PDB: 2JAS_B 2JAT_B 2JAQ_A 2VP4_D 1ZMX_F 1ZM7_C 1OE0_B 2VP9_C 2VPP_B 2VP6_G ....
Probab=97.44 E-value=1.8e-05 Score=58.11 Aligned_cols=74 Identities=22% Similarity=0.219 Sum_probs=44.5
Q ss_pred CeEEEEECCHHHHHHHHhccCCCCCCccccCCCCChhHHHHHHHH-HHHHHHHHHHhhccceeechhhhhhcccccCCCC
Q 029455 87 GISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLS-TLWEERGEAYANANARVSLENIAVKLGHKDVSSL 165 (193)
Q Consensus 87 ~~vV~L~~~~~~~~~Rl~~~~~~~R~~~~~~~~~~~~~~~~~~~~-~~~~~r~~~y~~~~~~i~~~~~~~~~~~iDt~~~ 165 (193)
+++|||++|++++.+|+.+| +|+....++ . +.++.+. +.+..+...+..+..+ +||++..
T Consensus 69 dl~IYL~~~~e~~~~RI~kR---gR~~E~~i~--~---~Yl~~L~~~~y~~~~~~~~~~~vl-----------~id~~~~ 129 (146)
T PF01712_consen 69 DLIIYLDASPETCLERIKKR---GREEEKNIP--L---EYLERLHEEAYEDWLKKYDSTPVL-----------VIDADNL 129 (146)
T ss_dssp SEEEEEE--HHHHHHHHHHC---TTGGGTTS---H---HHHHHHHHHHHCCHHSCCTTTTGC-----------EEEECEE
T ss_pred CeEEEEeCCHHHHHHHHHHh---CCchhcCCC--H---HHHHHHhHHHHHHHHHhCCCCceE-----------EEECCcc
Confidence 68999999999999999995 587765432 1 2355555 4554443322222332 4677776
Q ss_pred CHHHHHHHHHHHHH
Q 029455 166 TPVTIAIEALEQIE 179 (193)
Q Consensus 166 ~~~~~~~~i~~~~~ 179 (193)
++.+..+.+...+.
T Consensus 130 d~~~~~~~~~~~~~ 143 (146)
T PF01712_consen 130 DFVENPEDIEQVIN 143 (146)
T ss_dssp ECCSHHTTHHHHHC
T ss_pred CcccCHHHHHHHHH
Confidence 76666666655544
No 171
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.42 E-value=0.00013 Score=46.48 Aligned_cols=17 Identities=53% Similarity=0.579 Sum_probs=15.6
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
+|||||||+++.|++.+
T Consensus 7 ~~gsGKst~~~~l~~~l 23 (69)
T cd02019 7 GSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 58999999999999984
No 172
>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2.7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....
Probab=97.39 E-value=0.0024 Score=50.15 Aligned_cols=32 Identities=16% Similarity=0.321 Sum_probs=27.9
Q ss_pred CCCCchHHHHHHHHHhcCC-----cEeechHHHHHHh
Q 029455 1 MMGSGKTTVGKILSGVLGY-----SFFDCDTLIEQSV 32 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~-----~~~d~d~~~~~~~ 32 (193)
+||.|||++|+.|++-|.| .+|+.+++.+...
T Consensus 20 LPArGKs~ia~kl~ryL~w~g~~~~vFn~g~yRR~~~ 56 (222)
T PF01591_consen 20 LPARGKSYIARKLCRYLNWLGVKTKVFNVGDYRRKLS 56 (222)
T ss_dssp STTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhhcCCCcceeecccceeccc
Confidence 6999999999999987753 7899999988876
No 173
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=97.39 E-value=0.00054 Score=56.41 Aligned_cols=27 Identities=26% Similarity=0.306 Sum_probs=25.4
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHH
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTL 27 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~ 27 (193)
|+||||||+|..||++++..++++|.+
T Consensus 12 ptgsGKt~la~~la~~~~~~iis~Ds~ 38 (307)
T PRK00091 12 PTASGKTALAIELAKRLNGEIISADSM 38 (307)
T ss_pred CCCcCHHHHHHHHHHhCCCcEEecccc
Confidence 789999999999999999999999984
No 174
>COG5324 Uncharacterized conserved protein [Function unknown]
Probab=97.38 E-value=0.0026 Score=54.86 Aligned_cols=26 Identities=46% Similarity=0.790 Sum_probs=24.5
Q ss_pred CCCchHHHHHHHHHhcCCcEeechHH
Q 029455 2 MGSGKTTVGKILSGVLGYSFFDCDTL 27 (193)
Q Consensus 2 ~GsGKSTia~~La~~lg~~~~d~d~~ 27 (193)
.||||||+|+.|.+.+||+++..|++
T Consensus 383 igcgktt~ak~l~~lf~w~~vqnd~l 408 (758)
T COG5324 383 IGCGKTTVAKILEKLFGWPVVQNDNL 408 (758)
T ss_pred eccCcccHHHHHHHHcCCcccccCCC
Confidence 59999999999999999999999987
No 175
>PHA03132 thymidine kinase; Provisional
Probab=97.37 E-value=0.0061 Score=54.15 Aligned_cols=20 Identities=20% Similarity=0.224 Sum_probs=18.9
Q ss_pred CeEEEEECCHHHHHHHHhcc
Q 029455 87 GISVWLDVPLEALAQRIAAV 106 (193)
Q Consensus 87 ~~vV~L~~~~~~~~~Rl~~~ 106 (193)
+++|||+++++++++|+.+|
T Consensus 403 DLiIyLdv~pe~alkRIkkR 422 (580)
T PHA03132 403 DVIVLLKLNSEENLRRVKKR 422 (580)
T ss_pred CEEEEEeCCHHHHHHHHHhc
Confidence 79999999999999999885
No 176
>KOG4238 consensus Bifunctional ATP sulfurylase/adenosine 5'-phosphosulfate kinase [Nucleotide transport and metabolism]
Probab=97.36 E-value=0.00017 Score=59.95 Aligned_cols=97 Identities=27% Similarity=0.239 Sum_probs=52.9
Q ss_pred CCCCchHHHHHHHHHhc---CCcEee--chHHHHHHhC--CCCHHHHHHHhcchhhHHHHHHHHHHHhccCCcEEEeCCc
Q 029455 1 MMGSGKTTVGKILSGVL---GYSFFD--CDTLIEQSVD--GTSVAEIFKLYGEGFFREKETEVLQKLSLMRQLVVSTGGG 73 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l---g~~~~d--~d~~~~~~~~--g~~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~vi~~g~~ 73 (193)
++|+||||++-.|-+.| |+|++. .|.+..-.-+ |.+.. ++++..|++. .+ ..+......|..+..-
T Consensus 58 lsgagkttis~ale~~l~~~gipcy~ldgdnirhgl~knlgfs~e-----dreenirria-ev-aklfadaglvcitsfi 130 (627)
T KOG4238|consen 58 LSGAGKTTISFALEEYLVSHGIPCYSLDGDNIRHGLNKNLGFSPE-----DREENIRRIA-EV-AKLFADAGLVCITSFI 130 (627)
T ss_pred cCCCCcceeehHHHHHHHhcCCcccccCcchhhhhhhhccCCCch-----hHHHHHHHHH-HH-HHHHhcCCceeeehhc
Confidence 48999999999987654 788864 5565443211 43432 2344455442 12 2233333333333211
Q ss_pred eeeCHhhHH---hcc-----CCeEEEEECCHHHHHHHHhc
Q 029455 74 AVTRPINWR---YMQ-----KGISVWLDVPLEALAQRIAA 105 (193)
Q Consensus 74 ~v~~~~~~~---~l~-----~~~vV~L~~~~~~~~~Rl~~ 105 (193)
.+ ..+.+. .+. +.+.|++++|.++|.+|-.+
T Consensus 131 sp-f~~dr~~arkihe~~~l~f~ev~v~a~l~vceqrd~k 169 (627)
T KOG4238|consen 131 SP-FAKDRENARKIHESAGLPFFEVFVDAPLNVCEQRDVK 169 (627)
T ss_pred Ch-hhhhhhhhhhhhcccCCceEEEEecCchhhhhhcChH
Confidence 11 122221 121 14789999999999998764
No 177
>PLN02318 phosphoribulokinase/uridine kinase
Probab=97.26 E-value=0.0008 Score=59.74 Aligned_cols=28 Identities=18% Similarity=0.230 Sum_probs=23.3
Q ss_pred CCCCchHHHHHHHHHhcC-CcEeechHHH
Q 029455 1 MMGSGKTTVGKILSGVLG-YSFFDCDTLI 28 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg-~~~~d~d~~~ 28 (193)
++||||||+++.|+..++ ...++.|++.
T Consensus 73 pSGSGKTTLAk~LaglLp~vgvIsmDdy~ 101 (656)
T PLN02318 73 PSGAGKTVFTEKVLNFMPSIAVISMDNYN 101 (656)
T ss_pred CCCCcHHHHHHHHHhhCCCcEEEEEccee
Confidence 689999999999999874 4578888764
No 178
>PF02224 Cytidylate_kin: Cytidylate kinase; InterPro: IPR011994 Cytidylate kinase (2.7.4.14 from EC) catalyses the phosphorylation of cytidine 5'-monophosphate (dCMP) to cytidine 5'-diphosphate (dCDP) in the presence of ATP or GTP. ; GO: 0004127 cytidylate kinase activity, 0005524 ATP binding, 0006139 nucleobase-containing compound metabolic process; PDB: 3R20_A 4DIE_A 3R8C_B 2H92_B 1KDT_A 1KDP_B 2FEO_A 1KDO_B 2CMK_A 1KDR_A ....
Probab=97.25 E-value=0.0024 Score=47.35 Aligned_cols=97 Identities=22% Similarity=0.191 Sum_probs=48.6
Q ss_pred HHHHhccCCcEEEeCC--ceeeCHhhHHhccCCeEEEEECCHHHHHHHHhccCCCCCCccccCCCCChhHHHHHHHHHHH
Q 029455 57 LQKLSLMRQLVVSTGG--GAVTRPINWRYMQKGISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLW 134 (193)
Q Consensus 57 ~~~l~~~~~~vi~~g~--~~v~~~~~~~~l~~~~vV~L~~~~~~~~~Rl~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~ 134 (193)
.+.+...+++ |..|- |.+..|.. ++.|||+|+++++.+|-.+.. ...+ . .-.| +.+.+.+
T Consensus 56 Qr~~a~~~~v-V~eGRDigTvVfPdA------~~KifLtAs~e~RA~RR~~e~-~~~g--~----~~~~----e~v~~~i 117 (157)
T PF02224_consen 56 QREIAKKGGV-VMEGRDIGTVVFPDA------DLKIFLTASPEVRARRRYKEL-QEKG--K----KVSY----EEVLEDI 117 (157)
T ss_dssp HHHHHTTSCE-EEEESSCCCCCCTT-------SEEEEEE--HHHHHHHHHHHH-HHTT----------H----HHHHHHH
T ss_pred HHHHHHcCCe-EEecCCCceEEcCCC------CEEEEEECCHHHHHHHHHHHH-HhCC--C----CCCH----HHHHHHH
Confidence 3445544454 44562 55555532 589999999999988876521 0111 1 1112 3333333
Q ss_pred HHHHHHHh-h--ccceeechhhhhhcccccCCCCCHHHHHHHHHH
Q 029455 135 EERGEAYA-N--ANARVSLENIAVKLGHKDVSSLTPVTIAIEALE 176 (193)
Q Consensus 135 ~~r~~~y~-~--~~~~i~~~~~~~~~~~iDt~~~~~~~~~~~i~~ 176 (193)
..|...-. + +.+.. +.-.++||||+++++++++.|++
T Consensus 118 ~~RD~~D~~R~~aPL~~-----a~DAi~IDts~lti~evv~~il~ 157 (157)
T PF02224_consen 118 KERDERDSNREVAPLKK-----AEDAIVIDTSNLTIEEVVEKILE 157 (157)
T ss_dssp HHHHHHHHCTSSS-SS-------TTSEEEETTTS-HHHHHHHHHH
T ss_pred HhhChhhccCccCCCcc-----CCCeEEEECCCCCHHHHHHHHhC
Confidence 33332221 1 22221 11123589999999999999874
No 179
>KOG1384 consensus tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=97.23 E-value=0.0025 Score=52.41 Aligned_cols=105 Identities=16% Similarity=0.277 Sum_probs=61.6
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHH--HH---Hh--------CCCCHHHHHH------HhcchhhHHHHHHHHHHHh
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLI--EQ---SV--------DGTSVAEIFK------LYGEGFFREKETEVLQKLS 61 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~--~~---~~--------~g~~~~~~~~------~~~~~~~~~~e~~~~~~l~ 61 (193)
+.|||||-||--||.+++...+++|.+- +. .+ .|.+.. ++. ++-...|+.....+++.+.
T Consensus 15 ~TGsGKSrLaVdLA~rf~~EIINsDkmQvYkGldivTnK~t~~e~~gVPHH-Llg~l~~~~e~t~~~F~~~a~~aie~I~ 93 (348)
T KOG1384|consen 15 ATGAGKSRLAVDLATRFPGEIINSDKMQVYKGLDIVTNKITLQERKGVPHH-LLGHLHPEAEYTAGEFEDDASRAIEEIH 93 (348)
T ss_pred CCCCChhhhHHHHHHhCCceeecccceeeecCcccccccCChhhcCCCChH-HhCcCChHhhccHHHHHHHHHHHHHHHH
Confidence 4699999999999999999999988741 10 00 132211 110 1112235555555667776
Q ss_pred ccCCcEEEeCCceeeCHhhH-------------------HhccC-CeEEEEECCHHHHHHHHhcc
Q 029455 62 LMRQLVVSTGGGAVTRPINW-------------------RYMQK-GISVWLDVPLEALAQRIAAV 106 (193)
Q Consensus 62 ~~~~~vi~~g~~~v~~~~~~-------------------~~l~~-~~vV~L~~~~~~~~~Rl~~~ 106 (193)
..+..-|..||+-.+...-. ..|+. ..++||+++..++.+|+.+|
T Consensus 94 ~rgk~PIv~GGs~~yi~al~~~~~d~~~dp~~~~~g~~pS~lryd~c~lWlda~~~VL~~~l~~R 158 (348)
T KOG1384|consen 94 SRGKLPIVVGGSNSYLQALLSKRFDPKIDPFSSNTGSIPSELRYDCCFLWLDADQAVLFERLDKR 158 (348)
T ss_pred hCCCCCEEeCCchhhHHHHhhcCCCcccCcccccCCCCCcccccceEEEEEecchHHHHHHHHHH
Confidence 65544444554211100000 01111 58999999999999999875
No 180
>KOG3327 consensus Thymidylate kinase/adenylate kinase [Nucleotide transport and metabolism]
Probab=97.22 E-value=0.021 Score=43.45 Aligned_cols=79 Identities=15% Similarity=0.050 Sum_probs=43.9
Q ss_pred ccCCeEEEEECCHHHHHHHHhccCCCCCCccccCCCCChhHHHHHHHHHHHHHHHHHHhhccceeechhhhhhcccccCC
Q 029455 84 MQKGISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVSLENIAVKLGHKDVS 163 (193)
Q Consensus 84 l~~~~vV~L~~~~~~~~~Rl~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~r~~~y~~~~~~i~~~~~~~~~~~iDt~ 163 (193)
+++++++||++|++. .+|... ++..+. +..+...+...-+..+.+..+.-+ .++|.+
T Consensus 123 ~KPDlvlfL~v~p~~-~a~rgg-----fG~Ery--------e~v~fqekv~~~~q~l~r~e~~~~---------~~vDAs 179 (208)
T KOG3327|consen 123 PKPDLVLFLDVSPED-AARRGG-----FGEERY--------ETVAFQEKVLVFFQKLLRKEDLNW---------HVVDAS 179 (208)
T ss_pred CCCCeEEEEeCCHHH-HHHhcC-----cchhHH--------HHHHHHHHHHHHHHHHHhccCCCe---------EEEecC
Confidence 346899999999999 444433 332221 011222222222223333222111 136875
Q ss_pred CCCHHHHHHHHHHHHHhhhcccc
Q 029455 164 SLTPVTIAIEALEQIEGFLKEED 186 (193)
Q Consensus 164 ~~~~~~~~~~i~~~~~~~~~~~~ 186 (193)
.+.+++.+.|...++..+...-
T Consensus 180 -~sve~V~~~V~~i~e~~~~~~~ 201 (208)
T KOG3327|consen 180 -KSVEKVHQQVRSLVENVLSEPI 201 (208)
T ss_pred -ccHHHHHHHHHHHHHHhccCCC
Confidence 9999999999888887765443
No 181
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=97.19 E-value=0.0011 Score=54.08 Aligned_cols=27 Identities=19% Similarity=0.277 Sum_probs=25.3
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHH
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTL 27 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~ 27 (193)
|+|||||+++..|++.++..++++|.+
T Consensus 7 ~t~~GKs~la~~l~~~~~~~iis~Ds~ 33 (287)
T TIGR00174 7 PTAVGKSQLAIQLAKKLNAEIISVDSM 33 (287)
T ss_pred CCCCCHHHHHHHHHHhCCCcEEEechh
Confidence 689999999999999999999999973
No 182
>PLN02840 tRNA dimethylallyltransferase
Probab=97.18 E-value=0.00064 Score=58.06 Aligned_cols=27 Identities=22% Similarity=0.333 Sum_probs=25.0
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHH
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTL 27 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~ 27 (193)
|+||||||++..|+++++..+++.|.+
T Consensus 29 ptgsGKTtla~~La~~~~~~iis~Ds~ 55 (421)
T PLN02840 29 PTGAGKSRLALELAKRLNGEIISADSV 55 (421)
T ss_pred CCCCCHHHHHHHHHHHCCCCeEecccc
Confidence 689999999999999999999998873
No 183
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.16 E-value=0.00032 Score=54.98 Aligned_cols=22 Identities=41% Similarity=0.606 Sum_probs=18.7
Q ss_pred CCCCchHHHHHHHHHhcCCcEe
Q 029455 1 MMGSGKTTVGKILSGVLGYSFF 22 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~ 22 (193)
|||+||||+|+.+|+.+|..+.
T Consensus 58 PPG~GKTTLA~IIA~e~~~~~~ 79 (233)
T PF05496_consen 58 PPGLGKTTLARIIANELGVNFK 79 (233)
T ss_dssp STTSSHHHHHHHHHHHCT--EE
T ss_pred CCccchhHHHHHHHhccCCCeE
Confidence 8999999999999999997664
No 184
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=97.11 E-value=0.0019 Score=54.03 Aligned_cols=99 Identities=22% Similarity=0.260 Sum_probs=57.4
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHHHHHhCCCCHHHHH-HHhcchhhHHHHHHHHHHHhc--cCCcEEEeCC----c
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIF-KLYGEGFFREKETEVLQKLSL--MRQLVVSTGG----G 73 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~~~~~~g~~~~~~~-~~~~~~~~~~~e~~~~~~l~~--~~~~vi~~g~----~ 73 (193)
+.|||||++...|.+ .|..++|+....+-. |...-.+. .......|. ..+...+.. ....|+..+. |
T Consensus 149 ~TGsGKT~iL~~L~~-~~~~vlDlE~~aehr--GS~fG~~~~~qpsQ~~Fe---~~l~~~l~~~~~~~~i~vE~Es~~IG 222 (345)
T PRK11784 149 NTGSGKTELLQALAN-AGAQVLDLEGLANHR--GSSFGRLGGPQPSQKDFE---NLLAEALLKLDPARPIVVEDESRRIG 222 (345)
T ss_pred CCcccHHHHHHHHHh-cCCeEEECCchhhhc--cccccCCCCCCcchHHHH---HHHHHHHHcCCCCCeEEEEecccccc
Confidence 579999999999976 488899998876533 21111100 001111222 222222222 2234444432 2
Q ss_pred -eeeCHhhHHhccCCeEEEEECCHHHHHHHHhc
Q 029455 74 -AVTRPINWRYMQKGISVWLDVPLEALAQRIAA 105 (193)
Q Consensus 74 -~v~~~~~~~~l~~~~vV~L~~~~~~~~~Rl~~ 105 (193)
+.+...-++.++...+|+|.+|.+.+++|+.+
T Consensus 223 ~~~lP~~l~~~m~~~~~v~i~~~~e~Rv~~l~~ 255 (345)
T PRK11784 223 RVHLPEALYEAMQQAPIVVVEAPLEERVERLLE 255 (345)
T ss_pred CccCCHHHHHHHhhCCEEEEECCHHHHHHHHHH
Confidence 22334444555567899999999999999986
No 185
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=97.01 E-value=0.0011 Score=56.66 Aligned_cols=26 Identities=23% Similarity=0.433 Sum_probs=23.8
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechH
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDT 26 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~ 26 (193)
||||||||+|+.||+.++.+|+..|.
T Consensus 58 p~G~GKT~LAr~LAk~l~~~fi~vD~ 83 (443)
T PRK05201 58 PTGVGKTEIARRLAKLANAPFIKVEA 83 (443)
T ss_pred CCCCCHHHHHHHHHHHhCChheeecc
Confidence 79999999999999999999887774
No 186
>PLN02772 guanylate kinase
Probab=96.93 E-value=0.019 Score=48.68 Aligned_cols=17 Identities=29% Similarity=0.286 Sum_probs=15.4
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
|+|||||||.+.|.+.+
T Consensus 143 PSGvGKsTL~~~L~~~~ 159 (398)
T PLN02772 143 PSGVGKGTLISMLMKEF 159 (398)
T ss_pred CCCCCHHHHHHHHhhhc
Confidence 79999999999998765
No 187
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=96.86 E-value=0.00081 Score=56.65 Aligned_cols=26 Identities=27% Similarity=0.473 Sum_probs=22.6
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechH
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDT 26 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~ 26 (193)
|||+||||+|+.||..++..|.-.+-
T Consensus 56 PPG~GKTTlA~liA~~~~~~f~~~sA 81 (436)
T COG2256 56 PPGTGKTTLARLIAGTTNAAFEALSA 81 (436)
T ss_pred CCCCCHHHHHHHHHHhhCCceEEecc
Confidence 89999999999999999988765443
No 188
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.81 E-value=0.001 Score=47.91 Aligned_cols=22 Identities=36% Similarity=0.578 Sum_probs=20.1
Q ss_pred CCCCchHHHHHHHHHhcCCcEe
Q 029455 1 MMGSGKTTVGKILSGVLGYSFF 22 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~ 22 (193)
+||+|||++++.||+.++.+++
T Consensus 7 ~~G~GKt~l~~~la~~~~~~~~ 28 (139)
T PF07728_consen 7 PPGTGKTTLARELAALLGRPVI 28 (139)
T ss_dssp SSSSSHHHHHHHHHHHHTCEEE
T ss_pred CCCCCHHHHHHHHHHHhhcceE
Confidence 6999999999999999998764
No 189
>PLN02748 tRNA dimethylallyltransferase
Probab=96.80 E-value=0.0021 Score=55.75 Aligned_cols=26 Identities=23% Similarity=0.359 Sum_probs=24.8
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechH
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDT 26 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~ 26 (193)
|+||||||+|..||++++..++++|.
T Consensus 30 ptgsGKs~la~~la~~~~~eii~~Ds 55 (468)
T PLN02748 30 PTGSGKSKLAVDLASHFPVEIINADS 55 (468)
T ss_pred CCCCCHHHHHHHHHHhcCeeEEcCch
Confidence 68999999999999999999999996
No 190
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.76 E-value=0.0063 Score=54.23 Aligned_cols=34 Identities=32% Similarity=0.478 Sum_probs=27.3
Q ss_pred CCCCchHHHHHHHHHhcCCcEee--chHHHHHHhCCC
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFD--CDTLIEQSVDGT 35 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d--~d~~~~~~~~g~ 35 (193)
||||||||+|+.||..-++.|+. +.+++.... |.
T Consensus 476 PPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~v-Ge 511 (693)
T KOG0730|consen 476 PPGCGKTLLAKALANEAGMNFLSVKGPELFSKYV-GE 511 (693)
T ss_pred CCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhc-Cc
Confidence 89999999999999999888876 456665555 43
No 191
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.76 E-value=0.00076 Score=55.48 Aligned_cols=22 Identities=32% Similarity=0.303 Sum_probs=19.7
Q ss_pred CCCCchHHHHHHHHHhcCCcEe
Q 029455 1 MMGSGKTTVGKILSGVLGYSFF 22 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~ 22 (193)
|||+||||+|+.||++|.++..
T Consensus 185 PPGTGKTSLCKaLaQkLSIR~~ 206 (423)
T KOG0744|consen 185 PPGTGKTSLCKALAQKLSIRTN 206 (423)
T ss_pred CCCCChhHHHHHHHHhheeeec
Confidence 8999999999999999987643
No 192
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.70 E-value=0.001 Score=46.61 Aligned_cols=20 Identities=45% Similarity=0.552 Sum_probs=18.1
Q ss_pred CCCCchHHHHHHHHHhcCCc
Q 029455 1 MMGSGKTTVGKILSGVLGYS 20 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~ 20 (193)
||||||||+++.|+..++..
T Consensus 10 ~~G~GKTtl~~~l~~~~~~~ 29 (148)
T smart00382 10 PPGSGKTTLARALARELGPP 29 (148)
T ss_pred CCCCcHHHHHHHHHhccCCC
Confidence 79999999999999988764
No 193
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.65 E-value=0.0013 Score=48.85 Aligned_cols=27 Identities=26% Similarity=0.342 Sum_probs=19.7
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHHHH
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQ 30 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~~~ 30 (193)
.+||||||+++.|++. |++++ .+..+.
T Consensus 7 ~~stGKTTL~~~L~~~-g~~~v--~E~ar~ 33 (163)
T PF13521_consen 7 GPSTGKTTLIEALAAR-GYPVV--PEYARE 33 (163)
T ss_dssp -TTSHHHHHHHHHHHH-T-EEE----TTHH
T ss_pred CCCCCHHHHHHHHHHc-CCeEE--eecHHH
Confidence 4899999999999988 99988 444443
No 194
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=96.63 E-value=0.0014 Score=54.24 Aligned_cols=22 Identities=23% Similarity=0.362 Sum_probs=20.7
Q ss_pred CCCCchHHHHHHHHHhcCCcEe
Q 029455 1 MMGSGKTTVGKILSGVLGYSFF 22 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~ 22 (193)
+|||||||+++.||+.+|++++
T Consensus 72 ~pGtGKTtla~~lA~~l~~~~~ 93 (327)
T TIGR01650 72 YHGTGKSTHIEQIAARLNWPCV 93 (327)
T ss_pred CCCChHHHHHHHHHHHHCCCeE
Confidence 6999999999999999999886
No 195
>PRK06761 hypothetical protein; Provisional
Probab=96.57 E-value=0.0015 Score=53.06 Aligned_cols=20 Identities=35% Similarity=0.599 Sum_probs=18.0
Q ss_pred CCCCchHHHHHHHHHhcCCc
Q 029455 1 MMGSGKTTVGKILSGVLGYS 20 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~ 20 (193)
+|||||||+++.|++.++..
T Consensus 11 ~~GsGKTTla~~L~~~L~~~ 30 (282)
T PRK06761 11 LPGFGKSTTAKMLNDILSQN 30 (282)
T ss_pred CCCCCHHHHHHHHHHhcCcC
Confidence 69999999999999999753
No 196
>KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism]
Probab=96.56 E-value=0.01 Score=45.69 Aligned_cols=29 Identities=34% Similarity=0.480 Sum_probs=24.4
Q ss_pred CCCchHHHHHHHHHhc-CCcEeechHHHHH
Q 029455 2 MGSGKTTVGKILSGVL-GYSFFDCDTLIEQ 30 (193)
Q Consensus 2 ~GsGKSTia~~La~~l-g~~~~d~d~~~~~ 30 (193)
+.|||||||+.|.+.+ |+.+++-|++++.
T Consensus 13 TnsGKTTLak~l~~~f~~~~lIhqDDFyKp 42 (225)
T KOG3308|consen 13 TNSGKTTLAKSLHRFFPGCSLIHQDDFYKP 42 (225)
T ss_pred cCCCHhHHHHHHHHHccCCeeeccccccCc
Confidence 4699999999999887 4788999988753
No 197
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=96.55 E-value=0.011 Score=48.83 Aligned_cols=99 Identities=21% Similarity=0.258 Sum_probs=56.5
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHHHHHhCCCCHHHHH--HHhcchhhHHHHHHHHHHHh--ccCCcEEEeCC----
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIF--KLYGEGFFREKETEVLQKLS--LMRQLVVSTGG---- 72 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~~~~~~g~~~~~~~--~~~~~~~~~~~e~~~~~~l~--~~~~~vi~~g~---- 72 (193)
+.|+|||++++.|++. |..++|+.....-. |...-.+- .......|+ ..+...+. .....|+.++.
T Consensus 135 ~tg~gKt~Ll~~L~~~-~~~VvDlr~~a~hr--Gs~fG~~~~~~qpsq~~fe---~~L~~~l~~~~~~~~i~~e~es~~i 208 (311)
T TIGR03167 135 MTGSGKTELLHALANA-GAQVLDLEGLANHR--GSSFGALGLGPQPSQKRFE---NALAEALRRLDPGRPIFVEDESRRI 208 (311)
T ss_pred CCCcCHHHHHHHHhcC-CCeEEECCchHHhc--CcccCCCCCCCCCchHHHH---HHHHHHHHhCCCCceEEEEeCchhh
Confidence 4799999999999865 88999998865432 31110000 000112232 22222222 22233443332
Q ss_pred c-eeeCHhhHHhccCCeEEEEECCHHHHHHHHhc
Q 029455 73 G-AVTRPINWRYMQKGISVWLDVPLEALAQRIAA 105 (193)
Q Consensus 73 ~-~v~~~~~~~~l~~~~vV~L~~~~~~~~~Rl~~ 105 (193)
| +.+...-++.++...+|+|.+|.+.+++|+.+
T Consensus 209 g~~~~p~~l~~~m~~~~~i~i~~~~e~Rv~~l~~ 242 (311)
T TIGR03167 209 GRVALPDALFEAMRAAPLVELEASLEERVERLVE 242 (311)
T ss_pred ccccCCHHHHHHHhhCCEEEEECCHHHHHHHHHH
Confidence 1 22233344455567899999999999999997
No 198
>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.53 E-value=0.043 Score=40.90 Aligned_cols=32 Identities=34% Similarity=0.389 Sum_probs=22.8
Q ss_pred CCCCchHHHHHHHH-Hhc-CCcEeechHHHHHHh
Q 029455 1 MMGSGKTTVGKILS-GVL-GYSFFDCDTLIEQSV 32 (193)
Q Consensus 1 ~~GsGKSTia~~La-~~l-g~~~~d~d~~~~~~~ 32 (193)
+.||||||+-..+- ..+ ++.+++.|.+.....
T Consensus 10 ~NGsGKstv~~~~~~~~~~~~~~VN~D~iA~~i~ 43 (187)
T COG4185 10 PNGSGKSTVYASTLAPLLPGIVFVNADEIAAQIS 43 (187)
T ss_pred CCCCCceeeeeccchhhcCCeEEECHHHHhhhcC
Confidence 57999999865442 222 578999999876553
No 199
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.53 E-value=0.002 Score=51.86 Aligned_cols=22 Identities=23% Similarity=0.258 Sum_probs=20.3
Q ss_pred CCCCchHHHHHHHHHhcCCcEe
Q 029455 1 MMGSGKTTVGKILSGVLGYSFF 22 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~ 22 (193)
+||||||++|+.||+.+|.+++
T Consensus 29 ~~GtGKT~lA~~la~~lg~~~~ 50 (262)
T TIGR02640 29 PAGTGKTTLAMHVARKRDRPVM 50 (262)
T ss_pred CCCCCHHHHHHHHHHHhCCCEE
Confidence 6999999999999999998776
No 200
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=96.53 E-value=0.0018 Score=55.54 Aligned_cols=25 Identities=36% Similarity=0.490 Sum_probs=22.4
Q ss_pred CCCCchHHHHHHHHHhcCCcEeech
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCD 25 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d 25 (193)
|||||||++|+.||+.++.+++..|
T Consensus 116 p~GtGKT~lAr~lA~~l~~pf~~id 140 (412)
T PRK05342 116 PTGSGKTLLAQTLARILDVPFAIAD 140 (412)
T ss_pred CCCCCHHHHHHHHHHHhCCCceecc
Confidence 7999999999999999998887554
No 201
>PHA02575 1 deoxynucleoside monophosphate kinase; Provisional
Probab=96.42 E-value=0.004 Score=48.80 Aligned_cols=30 Identities=20% Similarity=0.181 Sum_probs=24.4
Q ss_pred CCCCchHHHHHHHHHhcCCcE-eechHHHHHH
Q 029455 1 MMGSGKTTVGKILSGVLGYSF-FDCDTLIEQS 31 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~-~d~d~~~~~~ 31 (193)
+|||||||+|+.+.+ .|.++ +++.+-++..
T Consensus 8 ~~gsGKstva~~~~~-~g~~~~~~~~d~ik~~ 38 (227)
T PHA02575 8 KKRSGKDTVADFIIE-NYNAVKYQLADPIKEI 38 (227)
T ss_pred CCCCCHHHHHHHHHh-cCCcEEEehhHHHHHH
Confidence 699999999998865 68888 8888766654
No 202
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.42 E-value=0.0023 Score=55.92 Aligned_cols=25 Identities=20% Similarity=0.395 Sum_probs=22.8
Q ss_pred CCCCchHHHHHHHHHhcCCcEeech
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCD 25 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d 25 (193)
|||||||.+|+.+|..+|.+++..+
T Consensus 267 PpGTGKTllAkaiA~e~~~~~~~l~ 291 (489)
T CHL00195 267 IQGTGKSLTAKAIANDWQLPLLRLD 291 (489)
T ss_pred CCCCcHHHHHHHHHHHhCCCEEEEE
Confidence 7999999999999999999987654
No 203
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.41 E-value=0.033 Score=45.69 Aligned_cols=32 Identities=22% Similarity=0.400 Sum_probs=25.6
Q ss_pred CCCCchHHHHHHHHHhcCCcEee--chHHHHHHh
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFD--CDTLIEQSV 32 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d--~d~~~~~~~ 32 (193)
|||+|||.+|+.+|.+-+-.||+ +.+++...+
T Consensus 174 PPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWm 207 (439)
T KOG0739|consen 174 PPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWM 207 (439)
T ss_pred CCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHh
Confidence 79999999999999999977765 455655444
No 204
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.40 E-value=0.0022 Score=53.80 Aligned_cols=19 Identities=26% Similarity=0.316 Sum_probs=17.6
Q ss_pred CCCCchHHHHHHHHHhcCC
Q 029455 1 MMGSGKTTVGKILSGVLGY 19 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~ 19 (193)
||||||||+++.|++.++-
T Consensus 86 PPGsGKStla~~La~~l~~ 104 (361)
T smart00763 86 PVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred CCCCCHHHHHHHHHHHHhh
Confidence 7999999999999999964
No 205
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=96.31 E-value=0.0031 Score=53.95 Aligned_cols=25 Identities=36% Similarity=0.494 Sum_probs=21.8
Q ss_pred CCCCchHHHHHHHHHhcCCcEeech
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCD 25 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d 25 (193)
|||||||++|+.||+.++.++.-.+
T Consensus 124 P~GsGKT~lAraLA~~l~~pf~~~d 148 (413)
T TIGR00382 124 PTGSGKTLLAQTLARILNVPFAIAD 148 (413)
T ss_pred CCCcCHHHHHHHHHHhcCCCeEEec
Confidence 7999999999999999998876433
No 206
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=96.30 E-value=0.0032 Score=53.01 Aligned_cols=32 Identities=16% Similarity=0.200 Sum_probs=25.3
Q ss_pred CCCCchHHHHHHHHHhcCCcEe--echHHHHHHh
Q 029455 1 MMGSGKTTVGKILSGVLGYSFF--DCDTLIEQSV 32 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~--d~d~~~~~~~ 32 (193)
|||||||.+|+.+|+++|++++ +..++.....
T Consensus 156 PPGcGKTllAraiA~elg~~~i~vsa~eL~sk~v 189 (413)
T PLN00020 156 GKGQGKSFQCELVFKKMGIEPIVMSAGELESENA 189 (413)
T ss_pred CCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcC
Confidence 7999999999999999998765 4555554333
No 207
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=96.26 E-value=0.002 Score=46.13 Aligned_cols=22 Identities=50% Similarity=0.665 Sum_probs=15.9
Q ss_pred CCCCchHHHHHHHHHhcCCcEe
Q 029455 1 MMGSGKTTVGKILSGVLGYSFF 22 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~ 22 (193)
+||+||||+++.||+.+|..|-
T Consensus 7 ~PG~GKT~la~~lA~~~~~~f~ 28 (131)
T PF07726_consen 7 VPGVGKTTLAKALARSLGLSFK 28 (131)
T ss_dssp ---HHHHHHHHHHHHHTT--EE
T ss_pred CCccHHHHHHHHHHHHcCCcee
Confidence 5999999999999999997664
No 208
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.26 E-value=0.0039 Score=44.12 Aligned_cols=22 Identities=36% Similarity=0.644 Sum_probs=18.5
Q ss_pred CCCCchHHHHHHHHHhc---CCcEe
Q 029455 1 MMGSGKTTVGKILSGVL---GYSFF 22 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l---g~~~~ 22 (193)
+||+||||+++.++..+ +.+++
T Consensus 27 ~~G~GKT~l~~~i~~~~~~~~~~v~ 51 (151)
T cd00009 27 PPGTGKTTLARAIANELFRPGAPFL 51 (151)
T ss_pred CCCCCHHHHHHHHHHHhhcCCCCeE
Confidence 69999999999999987 55444
No 209
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.24 E-value=0.0036 Score=45.25 Aligned_cols=20 Identities=40% Similarity=0.426 Sum_probs=18.2
Q ss_pred CCCCchHHHHHHHHHhcCCc
Q 029455 1 MMGSGKTTVGKILSGVLGYS 20 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~ 20 (193)
++||||||+++.+++.+|+.
T Consensus 30 ~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 30 DLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CCCCCHHHHHHHHHHHcCCC
Confidence 47999999999999999974
No 210
>KOG2702 consensus Predicted panthothenate kinase/uridine kinase-related protein [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=96.17 E-value=0.02 Score=45.17 Aligned_cols=41 Identities=27% Similarity=0.391 Sum_probs=31.7
Q ss_pred CcEEEeCCceeeCHhhHHhccC--CeEEEEECCHHHHHHHHhc
Q 029455 65 QLVVSTGGGAVTRPINWRYMQK--GISVWLDVPLEALAQRIAA 105 (193)
Q Consensus 65 ~~vi~~g~~~v~~~~~~~~l~~--~~vV~L~~~~~~~~~Rl~~ 105 (193)
+.||..|....+..++|..+.. +...|++++-++..+|+.+
T Consensus 236 rIvI~EGnYlLl~~~~Wkdi~k~~d~k~~idV~~~~a~~RVa~ 278 (323)
T KOG2702|consen 236 RIVILEGNYLLLDQENWKDIYKTLDDKYKIDVDYEAAEERVAK 278 (323)
T ss_pred eEEEEeccEEEecCccHHHHHHHhhhheeccccHHHHHHHHHH
Confidence 5566777777777778864432 5679999999999999987
No 211
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=96.15 E-value=0.0041 Score=54.55 Aligned_cols=25 Identities=36% Similarity=0.603 Sum_probs=22.5
Q ss_pred CCCCchHHHHHHHHHhcCCcEeech
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCD 25 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d 25 (193)
|||||||++++.||..++.+++..+
T Consensus 96 ppGtGKT~la~alA~~~~~~~~~i~ 120 (495)
T TIGR01241 96 PPGTGKTLLAKAVAGEAGVPFFSIS 120 (495)
T ss_pred CCCCCHHHHHHHHHHHcCCCeeecc
Confidence 7999999999999999999887654
No 212
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=96.15 E-value=0.0041 Score=52.94 Aligned_cols=24 Identities=25% Similarity=0.344 Sum_probs=21.2
Q ss_pred CCCCchHHHHHHHHHhcCCcEeec
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDC 24 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~ 24 (193)
|||||||++|+.+|.+++.+++..
T Consensus 173 ppGtGKT~lAkaia~~~~~~~i~v 196 (389)
T PRK03992 173 PPGTGKTLLAKAVAHETNATFIRV 196 (389)
T ss_pred CCCCChHHHHHHHHHHhCCCEEEe
Confidence 799999999999999999877643
No 213
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=96.12 E-value=0.0033 Score=50.44 Aligned_cols=17 Identities=47% Similarity=0.706 Sum_probs=15.6
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
||||||||+|+.+|+.+
T Consensus 50 ppGtGKTtlA~~ia~~l 66 (261)
T TIGR02881 50 NPGTGKTTVARILGKLF 66 (261)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 79999999999999865
No 214
>PRK06893 DNA replication initiation factor; Validated
Probab=96.11 E-value=0.039 Score=43.44 Aligned_cols=25 Identities=20% Similarity=0.138 Sum_probs=20.5
Q ss_pred CCCCchHHHHHHHHHhc-----CCcEeech
Q 029455 1 MMGSGKTTVGKILSGVL-----GYSFFDCD 25 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l-----g~~~~d~d 25 (193)
|||||||++++.++.++ +..|++..
T Consensus 47 ~~G~GKThL~~ai~~~~~~~~~~~~y~~~~ 76 (229)
T PRK06893 47 GKSSGKSHLLKAVSNHYLLNQRTAIYIPLS 76 (229)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCeEEeeHH
Confidence 69999999999999775 55677664
No 215
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=96.11 E-value=0.004 Score=48.48 Aligned_cols=27 Identities=26% Similarity=0.380 Sum_probs=22.3
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHH
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTL 27 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~ 27 (193)
|+|+|||.+|-.||+++|++++..|.+
T Consensus 9 pT~tGKt~~ai~lA~~~g~pvI~~Dri 35 (233)
T PF01745_consen 9 PTGTGKTALAIALAQKTGAPVISLDRI 35 (233)
T ss_dssp STTSSHHHHHHHHHHHH--EEEEE-SG
T ss_pred CCCCChhHHHHHHHHHhCCCEEEecce
Confidence 689999999999999999999998864
No 216
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.08 E-value=0.0038 Score=46.46 Aligned_cols=18 Identities=33% Similarity=0.279 Sum_probs=16.3
Q ss_pred CCCCchHHHHHHHHHhcC
Q 029455 1 MMGSGKTTVGKILSGVLG 18 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg 18 (193)
||||||||++..+++.|.
T Consensus 13 ~PGvGKtTl~~ki~e~L~ 30 (179)
T COG1618 13 RPGVGKTTLVLKIAEKLR 30 (179)
T ss_pred CCCccHHHHHHHHHHHHH
Confidence 799999999999998773
No 217
>PRK09087 hypothetical protein; Validated
Probab=96.07 E-value=0.0049 Score=48.53 Aligned_cols=28 Identities=21% Similarity=0.209 Sum_probs=24.6
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHH
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLI 28 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~ 28 (193)
++||||||+++.+++..+..+++.+.+.
T Consensus 52 ~~GsGKThLl~~~~~~~~~~~i~~~~~~ 79 (226)
T PRK09087 52 PVGSGKTHLASIWREKSDALLIHPNEIG 79 (226)
T ss_pred CCCCCHHHHHHHHHHhcCCEEecHHHcc
Confidence 5899999999999999999999886543
No 218
>PHA02244 ATPase-like protein
Probab=96.05 E-value=0.005 Score=51.87 Aligned_cols=27 Identities=22% Similarity=0.465 Sum_probs=23.9
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHH
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTL 27 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~ 27 (193)
|||||||++++.|+..+|.+++..+.+
T Consensus 127 ppGtGKTtLA~aLA~~lg~pfv~In~l 153 (383)
T PHA02244 127 GAGSGKNHIAEQIAEALDLDFYFMNAI 153 (383)
T ss_pred CCCCCHHHHHHHHHHHhCCCEEEEecC
Confidence 699999999999999999998876544
No 219
>PF13173 AAA_14: AAA domain
Probab=96.04 E-value=0.0054 Score=43.70 Aligned_cols=28 Identities=32% Similarity=0.244 Sum_probs=23.3
Q ss_pred CCCCchHHHHHHHHHhcC----CcEeechHHH
Q 029455 1 MMGSGKTTVGKILSGVLG----YSFFDCDTLI 28 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg----~~~~d~d~~~ 28 (193)
|.||||||+++.+++.+. +.+++.++..
T Consensus 10 ~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~ 41 (128)
T PF13173_consen 10 PRGVGKTTLLKQLAKDLLPPENILYINFDDPR 41 (128)
T ss_pred CCCCCHHHHHHHHHHHhcccccceeeccCCHH
Confidence 679999999999998875 7778877754
No 220
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.03 E-value=0.0055 Score=46.14 Aligned_cols=20 Identities=25% Similarity=0.273 Sum_probs=17.8
Q ss_pred CCCCchHHHHHHHHHhcCCc
Q 029455 1 MMGSGKTTVGKILSGVLGYS 20 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~ 20 (193)
+|||||||+|..|+..++.+
T Consensus 9 ~~~sGKS~~a~~l~~~~~~~ 28 (170)
T PRK05800 9 GARSGKSRFAERLAAQSGLQ 28 (170)
T ss_pred CCCccHHHHHHHHHHHcCCC
Confidence 58999999999999998744
No 221
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=95.98 E-value=0.0059 Score=51.39 Aligned_cols=24 Identities=25% Similarity=0.344 Sum_probs=21.5
Q ss_pred CCCCchHHHHHHHHHhcCCcEeec
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDC 24 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~ 24 (193)
|||||||++++.+++.++.+++..
T Consensus 164 ppGtGKT~lakaia~~l~~~~~~v 187 (364)
T TIGR01242 164 PPGTGKTLLAKAVAHETNATFIRV 187 (364)
T ss_pred CCCCCHHHHHHHHHHhCCCCEEec
Confidence 799999999999999999887654
No 222
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=95.96 E-value=0.0061 Score=52.03 Aligned_cols=24 Identities=25% Similarity=0.332 Sum_probs=21.6
Q ss_pred CCCCchHHHHHHHHHhcCCcEeec
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDC 24 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~ 24 (193)
|||||||++++.+|..++.+++..
T Consensus 187 ppGTGKT~LAkalA~~l~~~fi~i 210 (398)
T PTZ00454 187 PPGTGKTMLAKAVAHHTTATFIRV 210 (398)
T ss_pred CCCCCHHHHHHHHHHhcCCCEEEE
Confidence 799999999999999999887654
No 223
>PRK04195 replication factor C large subunit; Provisional
Probab=95.96 E-value=0.0058 Score=53.43 Aligned_cols=24 Identities=25% Similarity=0.452 Sum_probs=21.7
Q ss_pred CCCCchHHHHHHHHHhcCCcEeec
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDC 24 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~ 24 (193)
|||+||||+++.|++.+|+.++..
T Consensus 47 ppG~GKTtla~ala~el~~~~iel 70 (482)
T PRK04195 47 PPGVGKTSLAHALANDYGWEVIEL 70 (482)
T ss_pred CCCCCHHHHHHHHHHHcCCCEEEE
Confidence 799999999999999999887754
No 224
>CHL00181 cbbX CbbX; Provisional
Probab=95.90 E-value=0.0083 Score=48.99 Aligned_cols=17 Identities=41% Similarity=0.587 Sum_probs=15.5
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
||||||||+|+.+++.+
T Consensus 67 ~pGtGKT~lAr~la~~~ 83 (287)
T CHL00181 67 SPGTGKTTVALKMADIL 83 (287)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 79999999999998865
No 225
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=95.88 E-value=0.019 Score=47.21 Aligned_cols=26 Identities=12% Similarity=0.125 Sum_probs=23.1
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHH
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTL 27 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~ 27 (193)
|.|||||.+|-.||++ +..++++|..
T Consensus 12 pTasGKS~LAl~LA~~-~~eIIsaDS~ 37 (300)
T PRK14729 12 PTAVGKSNILFHFPKG-KAEIINVDSI 37 (300)
T ss_pred CCccCHHHHHHHHHHh-CCcEEeccHH
Confidence 6799999999999999 4599999974
No 226
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.87 E-value=0.0063 Score=52.06 Aligned_cols=25 Identities=24% Similarity=0.513 Sum_probs=22.8
Q ss_pred CCCCchHHHHHHHHHhcCCcEeech
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCD 25 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d 25 (193)
|||+||||+..++|..|++-++|.+
T Consensus 243 PPGTGKSS~IaAmAn~L~ydIydLe 267 (457)
T KOG0743|consen 243 PPGTGKSSFIAAMANYLNYDIYDLE 267 (457)
T ss_pred CCCCCHHHHHHHHHhhcCCceEEee
Confidence 8999999999999999999888744
No 227
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=95.87 E-value=0.0067 Score=42.12 Aligned_cols=26 Identities=23% Similarity=0.074 Sum_probs=19.2
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHH
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLI 28 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~ 28 (193)
++||||||+++.+. -|-..++.+++.
T Consensus 23 pSGsGKSTLl~~l~--~G~i~~~g~di~ 48 (107)
T cd00820 23 DSGIGKTELALELI--KRKHRLVGDDNV 48 (107)
T ss_pred CCCCCHHHHHHHhh--CCeEEEeeEeHH
Confidence 68999999999987 344455666553
No 228
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=95.86 E-value=0.0056 Score=48.63 Aligned_cols=18 Identities=56% Similarity=0.433 Sum_probs=16.5
Q ss_pred CCCCchHHHHHHHHHhcC
Q 029455 1 MMGSGKTTVGKILSGVLG 18 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg 18 (193)
|+||||||+++.+++.+.
T Consensus 4 paGSGKTT~~~~~~~~~~ 21 (238)
T PF03029_consen 4 PAGSGKTTFCKGLSEWLE 21 (238)
T ss_dssp STTSSHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 799999999999998774
No 229
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=95.85 E-value=0.0068 Score=53.43 Aligned_cols=23 Identities=39% Similarity=0.564 Sum_probs=21.0
Q ss_pred CCCCchHHHHHHHHHhcCCcEee
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFD 23 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d 23 (193)
||||||||..+.||+++|+.+..
T Consensus 53 P~G~GKtttv~~La~elg~~v~E 75 (519)
T PF03215_consen 53 PSGCGKTTTVKVLAKELGFEVQE 75 (519)
T ss_pred CCCCCHHHHHHHHHHHhCCeeEE
Confidence 79999999999999999987664
No 230
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=95.84 E-value=0.0059 Score=44.21 Aligned_cols=18 Identities=33% Similarity=0.281 Sum_probs=16.2
Q ss_pred CCCCchHHHHHHHHHhcC
Q 029455 1 MMGSGKTTVGKILSGVLG 18 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg 18 (193)
|+||||||+++.|++.+.
T Consensus 7 psGsGKstl~~~L~~~~~ 24 (137)
T cd00071 7 PSGVGKSTLLKRLLEEFD 24 (137)
T ss_pred CCCCCHHHHHHHHHhcCC
Confidence 789999999999998764
No 231
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=95.81 E-value=0.007 Score=50.20 Aligned_cols=22 Identities=32% Similarity=0.471 Sum_probs=19.8
Q ss_pred CCCCchHHHHHHHHHhcCCcEe
Q 029455 1 MMGSGKTTVGKILSGVLGYSFF 22 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~ 22 (193)
|||+||||+++.+|+.++..+.
T Consensus 59 ppG~GKT~la~~ia~~l~~~~~ 80 (328)
T PRK00080 59 PPGLGKTTLANIIANEMGVNIR 80 (328)
T ss_pred CCCccHHHHHHHHHHHhCCCeE
Confidence 7999999999999999997653
No 232
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=95.81 E-value=0.008 Score=48.98 Aligned_cols=17 Identities=41% Similarity=0.544 Sum_probs=14.8
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
||||||||+|+.+++.+
T Consensus 66 ~pGTGKT~lA~~ia~~l 82 (284)
T TIGR02880 66 NPGTGKTTVALRMAQIL 82 (284)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 69999999998887765
No 233
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=95.79 E-value=0.0077 Score=51.44 Aligned_cols=23 Identities=22% Similarity=0.124 Sum_probs=20.2
Q ss_pred CCCCchHHHHHHHHHhcCCcEee
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFD 23 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d 23 (193)
++||||||+++.|++.+|..++.
T Consensus 227 ~~gsGKTTL~~~La~~~g~~~v~ 249 (399)
T PRK08099 227 GESSGKSTLVNKLANIFNTTSAW 249 (399)
T ss_pred CCCCCHHHHHHHHHHHhCCCeee
Confidence 58999999999999999987653
No 234
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=95.77 E-value=0.0078 Score=49.16 Aligned_cols=21 Identities=33% Similarity=0.556 Sum_probs=19.0
Q ss_pred CCCCchHHHHHHHHHhcCCcE
Q 029455 1 MMGSGKTTVGKILSGVLGYSF 21 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~ 21 (193)
|||+||||+++.+++.++..+
T Consensus 38 p~G~GKT~la~~ia~~~~~~~ 58 (305)
T TIGR00635 38 PPGLGKTTLAHIIANEMGVNL 58 (305)
T ss_pred CCCCCHHHHHHHHHHHhCCCE
Confidence 799999999999999998654
No 235
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=95.74 E-value=0.008 Score=49.96 Aligned_cols=23 Identities=22% Similarity=0.120 Sum_probs=20.7
Q ss_pred CCCCchHHHHHHHHHhcCCcEee
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFD 23 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d 23 (193)
+|||||||+++.|++.+|.+++.
T Consensus 170 ~~~~gkstl~~~l~~~~~~~~v~ 192 (325)
T TIGR01526 170 GESTGKSTLVNKLAAVFNTTSAW 192 (325)
T ss_pred CCCCCHHHHHHHHHHhhCCCEEe
Confidence 58999999999999999998864
No 236
>PF13245 AAA_19: Part of AAA domain
Probab=95.72 E-value=0.0075 Score=39.17 Aligned_cols=17 Identities=35% Similarity=0.520 Sum_probs=12.4
Q ss_pred CCCCchH-HHHHHHHHhc
Q 029455 1 MMGSGKT-TVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKS-Tia~~La~~l 17 (193)
||||||| |+++.++..+
T Consensus 18 ~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 18 PPGTGKTTTLAARIAELL 35 (76)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 7999999 6666665544
No 237
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=95.70 E-value=0.0087 Score=45.10 Aligned_cols=27 Identities=30% Similarity=0.373 Sum_probs=21.2
Q ss_pred CCCCchHHHHHHHHHhcCC----cE--eechHH
Q 029455 1 MMGSGKTTVGKILSGVLGY----SF--FDCDTL 27 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~----~~--~d~d~~ 27 (193)
|+|+|||.+++.||+.+.. ++ +|+..+
T Consensus 11 psGvGKT~la~~la~~l~~~~~~~~~~~d~s~~ 43 (171)
T PF07724_consen 11 PSGVGKTELAKALAELLFVGSERPLIRIDMSEY 43 (171)
T ss_dssp STTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGH
T ss_pred CCCCCHHHHHHHHHHHhccCCccchHHHhhhcc
Confidence 7999999999999999985 54 455554
No 238
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=95.68 E-value=0.028 Score=46.18 Aligned_cols=27 Identities=30% Similarity=0.381 Sum_probs=25.4
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHH
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTL 27 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~ 27 (193)
|.+||||-+|-.||+++|.+++++|..
T Consensus 11 PTAsGKT~lai~LAk~~~~eIIs~DSm 37 (308)
T COG0324 11 PTASGKTALAIALAKRLGGEIISLDSM 37 (308)
T ss_pred CCCcCHHHHHHHHHHHcCCcEEecchh
Confidence 679999999999999999999999984
No 239
>PRK13342 recombination factor protein RarA; Reviewed
Probab=95.65 E-value=0.0089 Score=51.23 Aligned_cols=25 Identities=32% Similarity=0.487 Sum_probs=21.5
Q ss_pred CCCCchHHHHHHHHHhcCCcEeech
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCD 25 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d 25 (193)
|||+||||+++.|++.++..++..+
T Consensus 44 ppGtGKTtLA~~ia~~~~~~~~~l~ 68 (413)
T PRK13342 44 PPGTGKTTLARIIAGATDAPFEALS 68 (413)
T ss_pred CCCCCHHHHHHHHHHHhCCCEEEEe
Confidence 7999999999999999988776543
No 240
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=95.64 E-value=0.0067 Score=47.98 Aligned_cols=15 Identities=47% Similarity=0.860 Sum_probs=13.5
Q ss_pred CCCCchHHHHHHHHH
Q 029455 1 MMGSGKTTVGKILSG 15 (193)
Q Consensus 1 ~~GsGKSTia~~La~ 15 (193)
++||||||+++.|+-
T Consensus 41 eSGsGKSTL~r~l~G 55 (252)
T COG1124 41 ESGSGKSTLARLLAG 55 (252)
T ss_pred CCCCCHHHHHHHHhc
Confidence 589999999999974
No 241
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=95.60 E-value=0.0095 Score=51.44 Aligned_cols=23 Identities=26% Similarity=0.400 Sum_probs=20.8
Q ss_pred CCCCchHHHHHHHHHhcCCcEee
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFD 23 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d 23 (193)
|||||||++++.+|..++.+++.
T Consensus 225 PPGTGKT~LAraIA~el~~~fi~ 247 (438)
T PTZ00361 225 PPGTGKTLLAKAVANETSATFLR 247 (438)
T ss_pred CCCCCHHHHHHHHHHhhCCCEEE
Confidence 79999999999999999987764
No 242
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=95.57 E-value=0.0086 Score=41.36 Aligned_cols=18 Identities=39% Similarity=0.322 Sum_probs=15.7
Q ss_pred CCCCchHHHHHHHHHhcC
Q 029455 1 MMGSGKTTVGKILSGVLG 18 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg 18 (193)
+||+|||++++.|++.+.
T Consensus 6 ~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 6 PPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 589999999999987664
No 243
>PRK06620 hypothetical protein; Validated
Probab=95.55 E-value=0.0097 Score=46.47 Aligned_cols=23 Identities=26% Similarity=0.226 Sum_probs=19.7
Q ss_pred CCCCchHHHHHHHHHhcCCcEee
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFD 23 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d 23 (193)
|||||||++++.+++..+..+++
T Consensus 52 p~G~GKThLl~a~~~~~~~~~~~ 74 (214)
T PRK06620 52 PSSSGKTYLTKIWQNLSNAYIIK 74 (214)
T ss_pred CCCCCHHHHHHHHHhccCCEEcc
Confidence 69999999999999888865554
No 244
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=95.54 E-value=0.01 Score=49.30 Aligned_cols=23 Identities=35% Similarity=0.551 Sum_probs=20.5
Q ss_pred CCCCchHHHHHHHHHhcCCcEee
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFD 23 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d 23 (193)
+||+|||++++.+|+.+|.+++.
T Consensus 51 ~PG~gKT~la~~lA~~l~~~~~~ 73 (329)
T COG0714 51 PPGVGKTLLARALARALGLPFVR 73 (329)
T ss_pred CCCccHHHHHHHHHHHhCCCeEE
Confidence 69999999999999999976653
No 245
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=95.52 E-value=0.0097 Score=44.71 Aligned_cols=17 Identities=41% Similarity=0.303 Sum_probs=15.4
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
+||+||||+.+.+.+.+
T Consensus 7 ~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 7 PPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp -TTSSHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHh
Confidence 59999999999999988
No 246
>CHL00176 ftsH cell division protein; Validated
Probab=95.46 E-value=0.011 Score=53.35 Aligned_cols=25 Identities=32% Similarity=0.518 Sum_probs=22.4
Q ss_pred CCCCchHHHHHHHHHhcCCcEeech
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCD 25 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d 25 (193)
|||+|||++++.||...+.+++..+
T Consensus 224 PpGTGKT~LAralA~e~~~p~i~is 248 (638)
T CHL00176 224 PPGTGKTLLAKAIAGEAEVPFFSIS 248 (638)
T ss_pred CCCCCHHHHHHHHHHHhCCCeeecc
Confidence 7999999999999999999887643
No 247
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=95.43 E-value=0.013 Score=45.87 Aligned_cols=29 Identities=17% Similarity=0.269 Sum_probs=23.5
Q ss_pred CCCCchHHHHHHHHHhc-----CCcEeechHHHH
Q 029455 1 MMGSGKTTVGKILSGVL-----GYSFFDCDTLIE 29 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l-----g~~~~d~d~~~~ 29 (193)
++|||||++++.++.++ .+.++++.....
T Consensus 50 ~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~ 83 (227)
T PRK08903 50 EAGSGRSHLLQALVADASYGGRNARYLDAASPLL 83 (227)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHH
Confidence 58999999999999876 567788776543
No 248
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=95.37 E-value=0.012 Score=47.74 Aligned_cols=21 Identities=38% Similarity=0.575 Sum_probs=19.1
Q ss_pred CCCCchHHHHHHHHHhcCCcE
Q 029455 1 MMGSGKTTVGKILSGVLGYSF 21 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~ 21 (193)
|||-||||+|..+|.++|..+
T Consensus 60 PPGlGKTTLA~IIA~Emgvn~ 80 (332)
T COG2255 60 PPGLGKTTLAHIIANELGVNL 80 (332)
T ss_pred CCCCcHHHHHHHHHHHhcCCe
Confidence 799999999999999998644
No 249
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=95.37 E-value=0.013 Score=41.75 Aligned_cols=19 Identities=42% Similarity=0.613 Sum_probs=16.3
Q ss_pred CCCchHHHHHHHHHhcCCc
Q 029455 2 MGSGKTTVGKILSGVLGYS 20 (193)
Q Consensus 2 ~GsGKSTia~~La~~lg~~ 20 (193)
.||||||++|.|++.+|..
T Consensus 24 LGaGKTtf~r~l~~~lg~~ 42 (123)
T PF02367_consen 24 LGAGKTTFVRGLARALGID 42 (123)
T ss_dssp TTSSHHHHHHHHHHHTT--
T ss_pred CCCCHHHHHHHHHHHcCCC
Confidence 6999999999999999864
No 250
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=95.35 E-value=0.35 Score=37.82 Aligned_cols=31 Identities=19% Similarity=0.351 Sum_probs=23.2
Q ss_pred CCCCchHHHHHHHHHhc-----C--CcEeechHHHHHH
Q 029455 1 MMGSGKTTVGKILSGVL-----G--YSFFDCDTLIEQS 31 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l-----g--~~~~d~d~~~~~~ 31 (193)
++|+|||.+.+.++.++ + +.+++++++....
T Consensus 42 ~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~ 79 (219)
T PF00308_consen 42 PSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREF 79 (219)
T ss_dssp STTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHH
Confidence 58999999999997653 2 4577878876543
No 251
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=95.31 E-value=0.013 Score=53.85 Aligned_cols=24 Identities=29% Similarity=0.415 Sum_probs=21.8
Q ss_pred CCCCchHHHHHHHHHhcCCcEeec
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDC 24 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~ 24 (193)
|||||||++|+.||..++++++..
T Consensus 495 ppGtGKT~lakalA~e~~~~fi~v 518 (733)
T TIGR01243 495 PPGTGKTLLAKAVATESGANFIAV 518 (733)
T ss_pred CCCCCHHHHHHHHHHhcCCCEEEE
Confidence 799999999999999999888754
No 252
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.24 E-value=0.016 Score=43.32 Aligned_cols=27 Identities=37% Similarity=0.442 Sum_probs=21.0
Q ss_pred CCCCchHHHHHHHHHhc---CC--cEeechHH
Q 029455 1 MMGSGKTTVGKILSGVL---GY--SFFDCDTL 27 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l---g~--~~~d~d~~ 27 (193)
+|||||||++..|+..+ |. .+++.|..
T Consensus 8 ~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~ 39 (173)
T cd03115 8 LQGVGKTTTAAKLALYLKKKGKKVLLVAADTY 39 (173)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCC
Confidence 69999999999988765 44 45777753
No 253
>PLN02796 D-glycerate 3-kinase
Probab=95.23 E-value=0.013 Score=48.99 Aligned_cols=28 Identities=25% Similarity=0.230 Sum_probs=21.6
Q ss_pred CCCCchHHHHHHHHHhcC-----CcEeechHHH
Q 029455 1 MMGSGKTTVGKILSGVLG-----YSFFDCDTLI 28 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg-----~~~~d~d~~~ 28 (193)
++||||||+++.|...+. ...++.|++.
T Consensus 108 ~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfY 140 (347)
T PLN02796 108 PQGCGKTTLVFALVYLFNATGRRAASLSIDDFY 140 (347)
T ss_pred CCCCcHHHHHHHHHHHhcccCCceeEEEECCcc
Confidence 589999999999998774 3456666654
No 254
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.22 E-value=0.011 Score=46.85 Aligned_cols=15 Identities=33% Similarity=0.669 Sum_probs=13.9
Q ss_pred CCCCchHHHHHHHHH
Q 029455 1 MMGSGKTTVGKILSG 15 (193)
Q Consensus 1 ~~GsGKSTia~~La~ 15 (193)
|+||||||+-+.+|-
T Consensus 37 pSGcGKSTLLriiAG 51 (248)
T COG1116 37 PSGCGKSTLLRLIAG 51 (248)
T ss_pred CCCCCHHHHHHHHhC
Confidence 799999999999985
No 255
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.22 E-value=0.056 Score=48.25 Aligned_cols=32 Identities=28% Similarity=0.413 Sum_probs=25.3
Q ss_pred CCCCchHHHHHHHHHhcCCcEee--chHHHHHHh
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFD--CDTLIEQSV 32 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d--~d~~~~~~~ 32 (193)
|||||||-+|+.+|.+-|..|++ ..+++....
T Consensus 553 PPGCGKTLlAKAVANEag~NFisVKGPELlNkYV 586 (802)
T KOG0733|consen 553 PPGCGKTLLAKAVANEAGANFISVKGPELLNKYV 586 (802)
T ss_pred CCCccHHHHHHHHhhhccCceEeecCHHHHHHHh
Confidence 79999999999999999988876 445544333
No 256
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=95.18 E-value=0.013 Score=45.53 Aligned_cols=28 Identities=18% Similarity=0.189 Sum_probs=21.4
Q ss_pred CCCCchHHHHHHHHHhcC-----CcEeechHHH
Q 029455 1 MMGSGKTTVGKILSGVLG-----YSFFDCDTLI 28 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg-----~~~~d~d~~~ 28 (193)
++||||||+++.++..+. +.+++++.+.
T Consensus 46 ~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~ 78 (226)
T TIGR03420 46 ESGSGKSHLLQAACAAAEERGKSAIYLPLAELA 78 (226)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHH
Confidence 689999999999987652 4566666653
No 257
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=95.12 E-value=0.012 Score=49.25 Aligned_cols=15 Identities=40% Similarity=0.685 Sum_probs=13.8
Q ss_pred CCCCchHHHHHHHHH
Q 029455 1 MMGSGKTTVGKILSG 15 (193)
Q Consensus 1 ~~GsGKSTia~~La~ 15 (193)
|+||||||+.|.||-
T Consensus 39 PSGcGKTTlLR~IAG 53 (352)
T COG3842 39 PSGCGKTTLLRMIAG 53 (352)
T ss_pred CCCCCHHHHHHHHhC
Confidence 799999999999983
No 258
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=95.11 E-value=0.017 Score=50.64 Aligned_cols=26 Identities=23% Similarity=0.236 Sum_probs=22.9
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechH
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDT 26 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~ 26 (193)
|||+|||.+|+.+|..++.+|+..+.
T Consensus 284 pPGtGKT~lAkava~~~~~~fi~v~~ 309 (494)
T COG0464 284 PPGTGKTLLAKAVALESRSRFISVKG 309 (494)
T ss_pred CCCCCHHHHHHHHHhhCCCeEEEeeC
Confidence 79999999999999999988876543
No 259
>PRK10646 ADP-binding protein; Provisional
Probab=95.08 E-value=0.016 Score=42.82 Aligned_cols=18 Identities=39% Similarity=0.582 Sum_probs=16.9
Q ss_pred CCCchHHHHHHHHHhcCC
Q 029455 2 MGSGKTTVGKILSGVLGY 19 (193)
Q Consensus 2 ~GsGKSTia~~La~~lg~ 19 (193)
-|+||||++|.|++.||+
T Consensus 37 LGaGKTtf~rgl~~~Lg~ 54 (153)
T PRK10646 37 LGAGKTTFSRGFLQALGH 54 (153)
T ss_pred CCCCHHHHHHHHHHHcCC
Confidence 599999999999999997
No 260
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=95.07 E-value=0.015 Score=41.00 Aligned_cols=17 Identities=53% Similarity=0.462 Sum_probs=15.1
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
+||||||++++.+++.+
T Consensus 12 ~~G~GKT~~~~~~~~~~ 28 (131)
T PF13401_consen 12 PPGSGKTTLIKRLARQL 28 (131)
T ss_dssp -TTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 58999999999999976
No 261
>PF05729 NACHT: NACHT domain
Probab=95.03 E-value=0.015 Score=42.47 Aligned_cols=18 Identities=39% Similarity=0.433 Sum_probs=15.6
Q ss_pred CCCCchHHHHHHHHHhcC
Q 029455 1 MMGSGKTTVGKILSGVLG 18 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg 18 (193)
.||+||||+++.++..+.
T Consensus 8 ~~G~GKStll~~~~~~~~ 25 (166)
T PF05729_consen 8 EPGSGKSTLLRKLAQQLA 25 (166)
T ss_pred CCCCChHHHHHHHHHHHH
Confidence 589999999999987663
No 262
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.03 E-value=0.015 Score=50.68 Aligned_cols=19 Identities=47% Similarity=0.637 Sum_probs=17.7
Q ss_pred CCCCchHHHHHHHHHhcCC
Q 029455 1 MMGSGKTTVGKILSGVLGY 19 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~ 19 (193)
|||+||||+|+.+|+.+++
T Consensus 44 PpGtGKTTlA~~lA~~l~~ 62 (472)
T PRK14962 44 PRGTGKTTVARILAKSLNC 62 (472)
T ss_pred CCCCCHHHHHHHHHHHhcc
Confidence 7999999999999999875
No 263
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=95.02 E-value=0.024 Score=37.25 Aligned_cols=24 Identities=38% Similarity=0.441 Sum_probs=19.1
Q ss_pred CCCchHHHHHHHHHhc---CCcEeech
Q 029455 2 MGSGKTTVGKILSGVL---GYSFFDCD 25 (193)
Q Consensus 2 ~GsGKSTia~~La~~l---g~~~~d~d 25 (193)
+|+||||++..|+..+ |..++-.|
T Consensus 8 ~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 8 GGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred CCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 5999999999999877 56655544
No 264
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=95.02 E-value=0.017 Score=53.42 Aligned_cols=23 Identities=35% Similarity=0.534 Sum_probs=20.8
Q ss_pred CCCCchHHHHHHHHHhcCCcEee
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFD 23 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d 23 (193)
|||+||||+|+.||+.++.+++.
T Consensus 355 ppG~GKT~lAk~iA~~l~~~~~~ 377 (775)
T TIGR00763 355 PPGVGKTSLGKSIAKALNRKFVR 377 (775)
T ss_pred CCCCCHHHHHHHHHHHhcCCeEE
Confidence 79999999999999999987764
No 265
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=94.98 E-value=0.017 Score=46.16 Aligned_cols=18 Identities=39% Similarity=0.412 Sum_probs=16.5
Q ss_pred CCCCchHHHHHHHHHhcC
Q 029455 1 MMGSGKTTVGKILSGVLG 18 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg 18 (193)
++||||||+++.++..+.
T Consensus 51 ~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 51 EVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred CCCCCHHHHHHHHHHhcC
Confidence 689999999999998876
No 266
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=94.97 E-value=0.026 Score=41.60 Aligned_cols=25 Identities=24% Similarity=0.214 Sum_probs=20.0
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechH
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDT 26 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~ 26 (193)
++|+||||++..|.+ .|+.++.=|.
T Consensus 22 ~sG~GKStlal~L~~-~g~~lvaDD~ 46 (149)
T cd01918 22 PSGIGKSELALELIK-RGHRLVADDR 46 (149)
T ss_pred CCCCCHHHHHHHHHH-cCCeEEECCE
Confidence 689999999999986 5888775443
No 267
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.97 E-value=0.017 Score=48.67 Aligned_cols=19 Identities=37% Similarity=0.599 Sum_probs=17.7
Q ss_pred CCCCchHHHHHHHHHhcCC
Q 029455 1 MMGSGKTTVGKILSGVLGY 19 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~ 19 (193)
|||+||||+|+.+|+.+++
T Consensus 46 p~G~GKTtla~~la~~l~c 64 (363)
T PRK14961 46 TRGVGKTTIARLLAKSLNC 64 (363)
T ss_pred CCCCCHHHHHHHHHHHhcC
Confidence 7999999999999999875
No 268
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=94.93 E-value=0.019 Score=52.95 Aligned_cols=27 Identities=37% Similarity=0.458 Sum_probs=22.4
Q ss_pred CCCCchHHHHHHHHHhcCCcEe--echHH
Q 029455 1 MMGSGKTTVGKILSGVLGYSFF--DCDTL 27 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~--d~d~~ 27 (193)
|||||||++|+.||+.++.+++ |+.++
T Consensus 496 P~GvGKT~lAk~LA~~l~~~~i~id~se~ 524 (758)
T PRK11034 496 PTGVGKTEVTVQLSKALGIELLRFDMSEY 524 (758)
T ss_pred CCCCCHHHHHHHHHHHhCCCcEEeechhh
Confidence 7999999999999999987765 44444
No 269
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=94.85 E-value=0.02 Score=52.65 Aligned_cols=24 Identities=29% Similarity=0.405 Sum_probs=21.2
Q ss_pred CCCCchHHHHHHHHHhcCCcEeec
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDC 24 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~ 24 (193)
||||||||+++.||..++.+++..
T Consensus 220 ppGtGKT~laraia~~~~~~~i~i 243 (733)
T TIGR01243 220 PPGTGKTLLAKAVANEAGAYFISI 243 (733)
T ss_pred CCCCChHHHHHHHHHHhCCeEEEE
Confidence 699999999999999999877643
No 270
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.84 E-value=0.019 Score=50.04 Aligned_cols=20 Identities=40% Similarity=0.546 Sum_probs=18.4
Q ss_pred CCCCchHHHHHHHHHhcCCc
Q 029455 1 MMGSGKTTVGKILSGVLGYS 20 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~ 20 (193)
|+|+||||+|+.||+.+++.
T Consensus 48 P~GtGKTTlAriLAk~Lnce 67 (484)
T PRK14956 48 PRGVGKTTIARILAKRLNCE 67 (484)
T ss_pred CCCCCHHHHHHHHHHhcCcc
Confidence 69999999999999999874
No 271
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=94.79 E-value=0.019 Score=50.54 Aligned_cols=20 Identities=30% Similarity=0.398 Sum_probs=18.1
Q ss_pred CCCCchHHHHHHHHHhcCCc
Q 029455 1 MMGSGKTTVGKILSGVLGYS 20 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~ 20 (193)
|||||||++++.+|+.++.+
T Consensus 224 PPGTGKT~LAKAlA~eL~~~ 243 (512)
T TIGR03689 224 PPGCGKTLIAKAVANSLAQR 243 (512)
T ss_pred CCCCcHHHHHHHHHHhhccc
Confidence 79999999999999998654
No 272
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.75 E-value=0.023 Score=51.45 Aligned_cols=24 Identities=33% Similarity=0.542 Sum_probs=22.3
Q ss_pred CCCCchHHHHHHHHHhcCCcEeec
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDC 24 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~ 24 (193)
|||-||||+|..+|++-|+.+++.
T Consensus 334 ppGlGKTTLAHViAkqaGYsVvEI 357 (877)
T KOG1969|consen 334 PPGLGKTTLAHVIAKQAGYSVVEI 357 (877)
T ss_pred CCCCChhHHHHHHHHhcCceEEEe
Confidence 799999999999999999999863
No 273
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=94.74 E-value=0.018 Score=48.01 Aligned_cols=15 Identities=33% Similarity=0.662 Sum_probs=13.9
Q ss_pred CCCCchHHHHHHHHH
Q 029455 1 MMGSGKTTVGKILSG 15 (193)
Q Consensus 1 ~~GsGKSTia~~La~ 15 (193)
|+||||||+.+.+|-
T Consensus 37 PSGcGKSTlLr~IAG 51 (338)
T COG3839 37 PSGCGKSTLLRMIAG 51 (338)
T ss_pred CCCCCHHHHHHHHhC
Confidence 799999999999984
No 274
>PRK08084 DNA replication initiation factor; Provisional
Probab=94.73 E-value=0.02 Score=45.32 Aligned_cols=26 Identities=15% Similarity=0.267 Sum_probs=20.8
Q ss_pred CCCCchHHHHHHHHHhcC-----CcEeechH
Q 029455 1 MMGSGKTTVGKILSGVLG-----YSFFDCDT 26 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg-----~~~~d~d~ 26 (193)
|+|||||++++.++..+. ..+++.+.
T Consensus 53 p~G~GKThLl~a~~~~~~~~~~~v~y~~~~~ 83 (235)
T PRK08084 53 REGAGRSHLLHAACAELSQRGRAVGYVPLDK 83 (235)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCeEEEEEHHH
Confidence 799999999999987654 45666665
No 275
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=94.68 E-value=0.21 Score=44.98 Aligned_cols=31 Identities=16% Similarity=0.267 Sum_probs=23.4
Q ss_pred CCCCchHHHHHHHHHhc-----C--CcEeechHHHHHH
Q 029455 1 MMGSGKTTVGKILSGVL-----G--YSFFDCDTLIEQS 31 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l-----g--~~~~d~d~~~~~~ 31 (193)
++|+|||.|+..++..+ | +.|++++++....
T Consensus 322 ~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el 359 (617)
T PRK14086 322 ESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEF 359 (617)
T ss_pred CCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHH
Confidence 48999999999998865 3 3677777766443
No 276
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=94.65 E-value=0.022 Score=41.24 Aligned_cols=17 Identities=41% Similarity=0.397 Sum_probs=15.2
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
+|||||||++..++..+
T Consensus 7 ~~G~GKT~l~~~i~~~~ 23 (165)
T cd01120 7 PTGSGKTTLALQLALNI 23 (165)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 68999999999998766
No 277
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=94.63 E-value=0.023 Score=51.33 Aligned_cols=27 Identities=33% Similarity=0.533 Sum_probs=22.6
Q ss_pred CCCCchHHHHHHHHHhcCCcEe--echHH
Q 029455 1 MMGSGKTTVGKILSGVLGYSFF--DCDTL 27 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~--d~d~~ 27 (193)
|||.|||++++-+|+.+|-.|+ +.+.+
T Consensus 358 PPGVGKTSLgkSIA~al~RkfvR~sLGGv 386 (782)
T COG0466 358 PPGVGKTSLGKSIAKALGRKFVRISLGGV 386 (782)
T ss_pred CCCCCchhHHHHHHHHhCCCEEEEecCcc
Confidence 8999999999999999997775 44443
No 278
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.61 E-value=0.02 Score=44.71 Aligned_cols=14 Identities=43% Similarity=0.541 Sum_probs=12.9
Q ss_pred CCCCchHHHHHHHH
Q 029455 1 MMGSGKTTVGKILS 14 (193)
Q Consensus 1 ~~GsGKSTia~~La 14 (193)
|+||||||+.|.|-
T Consensus 36 pSGSGKSTlLRclN 49 (240)
T COG1126 36 PSGSGKSTLLRCLN 49 (240)
T ss_pred CCCCCHHHHHHHHH
Confidence 79999999999984
No 279
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=94.60 E-value=0.025 Score=41.53 Aligned_cols=18 Identities=39% Similarity=0.575 Sum_probs=16.6
Q ss_pred CCCchHHHHHHHHHhcCC
Q 029455 2 MGSGKTTVGKILSGVLGY 19 (193)
Q Consensus 2 ~GsGKSTia~~La~~lg~ 19 (193)
-||||||++|.+++.||.
T Consensus 34 LGAGKTtf~rgi~~~Lg~ 51 (149)
T COG0802 34 LGAGKTTLVRGIAKGLGV 51 (149)
T ss_pred CcCChHHHHHHHHHHcCC
Confidence 499999999999999994
No 280
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=94.60 E-value=0.12 Score=41.75 Aligned_cols=29 Identities=28% Similarity=0.314 Sum_probs=24.0
Q ss_pred CCCCchHHHHHHHHHhcCCcEeec--hHHHH
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDC--DTLIE 29 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~--d~~~~ 29 (193)
|||+|||-+|+.||.+...|++.. ..++-
T Consensus 159 ppGTGKTm~Akalane~kvp~l~vkat~liG 189 (368)
T COG1223 159 PPGTGKTMMAKALANEAKVPLLLVKATELIG 189 (368)
T ss_pred CCCccHHHHHHHHhcccCCceEEechHHHHH
Confidence 799999999999999999988753 34443
No 281
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=94.58 E-value=0.031 Score=47.10 Aligned_cols=28 Identities=25% Similarity=0.420 Sum_probs=20.7
Q ss_pred CCCCchHHHHHHHHHhcC--CcEe--echHHH
Q 029455 1 MMGSGKTTVGKILSGVLG--YSFF--DCDTLI 28 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg--~~~~--d~d~~~ 28 (193)
|||||||.+|-.+|+.|| .||. ++.+++
T Consensus 58 ppGtGKTAlA~~ia~eLG~~~PF~~isgSEiy 89 (398)
T PF06068_consen 58 PPGTGKTALAMAIAKELGEDVPFVSISGSEIY 89 (398)
T ss_dssp -TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-
T ss_pred CCCCCchHHHHHHHHHhCCCCCeeEcccceee
Confidence 799999999999999998 5665 444443
No 282
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=94.58 E-value=0.028 Score=50.99 Aligned_cols=25 Identities=32% Similarity=0.507 Sum_probs=22.2
Q ss_pred CCCCchHHHHHHHHHhcCCcEeech
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCD 25 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d 25 (193)
||||||||+++.++.+++.+++..+
T Consensus 193 ~~G~GKt~~~~~~a~~~~~~f~~is 217 (644)
T PRK10733 193 PPGTGKTLLAKAIAGEAKVPFFTIS 217 (644)
T ss_pred CCCCCHHHHHHHHHHHcCCCEEEEe
Confidence 6999999999999999999887543
No 283
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=94.57 E-value=0.027 Score=46.19 Aligned_cols=22 Identities=41% Similarity=0.554 Sum_probs=19.0
Q ss_pred CCCCchHHHHHHHHHhcCCcEe
Q 029455 1 MMGSGKTTVGKILSGVLGYSFF 22 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~ 22 (193)
+||+||||+++.+++.++..++
T Consensus 51 ~~G~GKT~la~~l~~~~~~~~~ 72 (316)
T PHA02544 51 SPGTGKTTVAKALCNEVGAEVL 72 (316)
T ss_pred cCCCCHHHHHHHHHHHhCccce
Confidence 6999999999999998876544
No 284
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=94.56 E-value=0.024 Score=49.92 Aligned_cols=20 Identities=35% Similarity=0.571 Sum_probs=18.4
Q ss_pred CCCCchHHHHHHHHHhcCCc
Q 029455 1 MMGSGKTTVGKILSGVLGYS 20 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~ 20 (193)
|+|+||||+|+.||+.+++.
T Consensus 51 p~G~GKTT~ArilAk~Lnc~ 70 (507)
T PRK06645 51 IRGVGKTTSARIIAKAVNCS 70 (507)
T ss_pred CCCCCHHHHHHHHHHHhcCc
Confidence 69999999999999999874
No 285
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.54 E-value=0.024 Score=49.83 Aligned_cols=23 Identities=43% Similarity=0.684 Sum_probs=20.9
Q ss_pred CCCCchHHHHHHHHHhcCCcEee
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFD 23 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d 23 (193)
|+||||||..+.|++.+|+.++.
T Consensus 118 PsGcGKSTtvkvLskelg~~~~E 140 (634)
T KOG1970|consen 118 PSGCGKSTTVKVLSKELGYQLIE 140 (634)
T ss_pred CCCCCchhHHHHHHHhhCceeee
Confidence 79999999999999999987764
No 286
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=94.52 E-value=0.026 Score=40.34 Aligned_cols=17 Identities=29% Similarity=0.569 Sum_probs=15.7
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
+||+|||.+++.||+.+
T Consensus 61 ~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 61 WTGTGKNFVSRLIAEHL 77 (127)
T ss_pred CCCCcHHHHHHHHHHHH
Confidence 68999999999999975
No 287
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.47 E-value=0.083 Score=44.28 Aligned_cols=32 Identities=22% Similarity=0.381 Sum_probs=27.1
Q ss_pred CCCCchHHHHHHHHHhcCCcEee--chHHHHHHh
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFD--CDTLIEQSV 32 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d--~d~~~~~~~ 32 (193)
|||+|||-+|+++|.+.+..|+- +.++++...
T Consensus 193 PPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYi 226 (406)
T COG1222 193 PPGTGKTLLAKAVANQTDATFIRVVGSELVQKYI 226 (406)
T ss_pred CCCCcHHHHHHHHHhccCceEEEeccHHHHHHHh
Confidence 79999999999999999988874 566776655
No 288
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=94.36 E-value=0.03 Score=51.36 Aligned_cols=26 Identities=27% Similarity=0.363 Sum_probs=22.0
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechH
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDT 26 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~ 26 (193)
|||+||||+++.+++.++..++..+.
T Consensus 60 PpGtGKTTLA~aIA~~~~~~f~~lna 85 (725)
T PRK13341 60 PPGVGKTTLARIIANHTRAHFSSLNA 85 (725)
T ss_pred CCCCCHHHHHHHHHHHhcCcceeehh
Confidence 79999999999999998877665544
No 289
>PLN03025 replication factor C subunit; Provisional
Probab=94.35 E-value=0.027 Score=46.57 Aligned_cols=17 Identities=41% Similarity=0.305 Sum_probs=16.1
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
|||+||||+++.+|+.+
T Consensus 42 p~G~GKTtla~~la~~l 58 (319)
T PLN03025 42 PPGTGKTTSILALAHEL 58 (319)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 79999999999999987
No 290
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=94.35 E-value=0.026 Score=44.38 Aligned_cols=15 Identities=47% Similarity=0.685 Sum_probs=13.5
Q ss_pred CCCCchHHHHHHHHH
Q 029455 1 MMGSGKTTVGKILSG 15 (193)
Q Consensus 1 ~~GsGKSTia~~La~ 15 (193)
|+||||||+-..|+-
T Consensus 39 pSGSGKSTLLniig~ 53 (226)
T COG1136 39 PSGSGKSTLLNLLGG 53 (226)
T ss_pred CCCCCHHHHHHHHhc
Confidence 799999999999874
No 291
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.34 E-value=0.11 Score=47.49 Aligned_cols=32 Identities=25% Similarity=0.351 Sum_probs=25.8
Q ss_pred CCCCchHHHHHHHHHhcCCcEee--chHHHHHHh
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFD--CDTLIEQSV 32 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d--~d~~~~~~~ 32 (193)
|||+|||=+|+++|.+..+.|++ ..+++-...
T Consensus 713 PPGTGKTLlAKAVATEcsL~FlSVKGPELLNMYV 746 (953)
T KOG0736|consen 713 PPGTGKTLLAKAVATECSLNFLSVKGPELLNMYV 746 (953)
T ss_pred CCCCchHHHHHHHHhhceeeEEeecCHHHHHHHh
Confidence 79999999999999999999987 345553333
No 292
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.28 E-value=0.031 Score=51.03 Aligned_cols=30 Identities=33% Similarity=0.610 Sum_probs=25.1
Q ss_pred CCCCchHHHHHHHHHhcCCcEeec--hHHHHH
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDC--DTLIEQ 30 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~--d~~~~~ 30 (193)
|||||||-+|+++|.+-|.||++. .++++.
T Consensus 352 PPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~ 383 (774)
T KOG0731|consen 352 PPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEM 383 (774)
T ss_pred CCCCcHHHHHHHHhcccCCceeeechHHHHHH
Confidence 899999999999999999999864 344443
No 293
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=94.26 E-value=0.028 Score=50.93 Aligned_cols=23 Identities=35% Similarity=0.566 Sum_probs=20.9
Q ss_pred CCCCchHHHHHHHHHhcCCcEee
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFD 23 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d 23 (193)
|||.|||+||+-+|+.||-.|+.
T Consensus 446 PPGVGKTSI~kSIA~ALnRkFfR 468 (906)
T KOG2004|consen 446 PPGVGKTSIAKSIARALNRKFFR 468 (906)
T ss_pred CCCCCcccHHHHHHHHhCCceEE
Confidence 89999999999999999977753
No 294
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=94.25 E-value=0.031 Score=42.99 Aligned_cols=18 Identities=28% Similarity=0.320 Sum_probs=15.5
Q ss_pred CCCCchHHHHHHHHHhcC
Q 029455 1 MMGSGKTTVGKILSGVLG 18 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg 18 (193)
|+||||||+.+.|...+.
T Consensus 9 ptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 9 PTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred CCCCCHHHHHHHHHHHhh
Confidence 689999999998877664
No 295
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=94.25 E-value=0.039 Score=42.30 Aligned_cols=28 Identities=21% Similarity=0.108 Sum_probs=20.2
Q ss_pred CCCCchHHHHHHHHH----hcCCcEeechHHH
Q 029455 1 MMGSGKTTVGKILSG----VLGYSFFDCDTLI 28 (193)
Q Consensus 1 ~~GsGKSTia~~La~----~lg~~~~d~d~~~ 28 (193)
|||||||++...+-+ ++.+.++..|.+-
T Consensus 21 p~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t 52 (202)
T COG0378 21 PPGSGKTALIEKTLRALKDEYKIAVITGDIYT 52 (202)
T ss_pred CCCcCHHHHHHHHHHHHHhhCCeEEEeceeec
Confidence 799999999766544 4567777766544
No 296
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=94.25 E-value=0.034 Score=51.16 Aligned_cols=28 Identities=36% Similarity=0.570 Sum_probs=22.9
Q ss_pred CCCCchHHHHHHHHHhcCCcE--eechHHH
Q 029455 1 MMGSGKTTVGKILSGVLGYSF--FDCDTLI 28 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~--~d~d~~~ 28 (193)
|+|+|||++|+.||+.++.++ +|+..+.
T Consensus 492 p~GvGKT~lA~~la~~l~~~~~~~d~se~~ 521 (731)
T TIGR02639 492 PTGVGKTELAKQLAEALGVHLERFDMSEYM 521 (731)
T ss_pred CCCccHHHHHHHHHHHhcCCeEEEeCchhh
Confidence 799999999999999998754 4555554
No 297
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=94.24 E-value=0.043 Score=41.26 Aligned_cols=21 Identities=29% Similarity=0.292 Sum_probs=17.5
Q ss_pred CCCCchHHHHHHHHHhcCCcE
Q 029455 1 MMGSGKTTVGKILSGVLGYSF 21 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~ 21 (193)
++|||||++|..++...+-++
T Consensus 7 ~~~sGKS~~a~~~~~~~~~~~ 27 (169)
T cd00544 7 GARSGKSRFAERLAAELGGPV 27 (169)
T ss_pred CCCCCHHHHHHHHHHhcCCCe
Confidence 589999999999998766444
No 298
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=94.20 E-value=0.77 Score=39.83 Aligned_cols=29 Identities=14% Similarity=0.298 Sum_probs=22.5
Q ss_pred CCCCchHHHHHHHHHhc-----C--CcEeechHHHH
Q 029455 1 MMGSGKTTVGKILSGVL-----G--YSFFDCDTLIE 29 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l-----g--~~~~d~d~~~~ 29 (193)
+||+|||++++.++.++ + +.+++++++..
T Consensus 156 ~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~ 191 (450)
T PRK00149 156 GVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTN 191 (450)
T ss_pred CCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHH
Confidence 69999999999999876 3 34667776654
No 299
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.16 E-value=0.033 Score=47.50 Aligned_cols=20 Identities=25% Similarity=0.532 Sum_probs=18.4
Q ss_pred CCCCchHHHHHHHHHhcCCc
Q 029455 1 MMGSGKTTVGKILSGVLGYS 20 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~ 20 (193)
|||+||||+|+.+|+.+.+.
T Consensus 46 p~G~GKtt~A~~~a~~l~c~ 65 (397)
T PRK14955 46 LRGVGKTTAARVFAKAVNCQ 65 (397)
T ss_pred CCCCCHHHHHHHHHHHhcCC
Confidence 79999999999999999874
No 300
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.16 E-value=0.033 Score=50.35 Aligned_cols=19 Identities=42% Similarity=0.637 Sum_probs=18.0
Q ss_pred CCCCchHHHHHHHHHhcCC
Q 029455 1 MMGSGKTTVGKILSGVLGY 19 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~ 19 (193)
|+|+||||+|+.||+.+++
T Consensus 45 PpGvGKTTlAriLAK~LnC 63 (702)
T PRK14960 45 TRGVGKTTIARILAKCLNC 63 (702)
T ss_pred CCCCCHHHHHHHHHHHhCC
Confidence 6899999999999999987
No 301
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.16 E-value=0.033 Score=49.09 Aligned_cols=20 Identities=40% Similarity=0.607 Sum_probs=18.3
Q ss_pred CCCCchHHHHHHHHHhcCCc
Q 029455 1 MMGSGKTTVGKILSGVLGYS 20 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~ 20 (193)
|+|+||||+|+.||+.+++.
T Consensus 46 p~G~GKTt~A~~lAk~l~c~ 65 (509)
T PRK14958 46 TRGVGKTTISRILAKCLNCE 65 (509)
T ss_pred CCCCCHHHHHHHHHHHhcCC
Confidence 69999999999999999864
No 302
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=94.14 E-value=0.032 Score=47.87 Aligned_cols=28 Identities=25% Similarity=0.242 Sum_probs=21.4
Q ss_pred CCCCchHHHHHHHHHhcC-----CcEeechHHH
Q 029455 1 MMGSGKTTVGKILSGVLG-----YSFFDCDTLI 28 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg-----~~~~d~d~~~ 28 (193)
++||||||+++.|...+. ...++.|++.
T Consensus 220 ~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDfY 252 (460)
T PLN03046 220 PQGCGKTTLVFALDYLFRVTGRKSATLSIDDFY 252 (460)
T ss_pred CCCCCHHHHHHHHHHHhcccCCceEEEEECCcc
Confidence 589999999999987652 4556777654
No 303
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.10 E-value=0.11 Score=45.74 Aligned_cols=24 Identities=33% Similarity=0.591 Sum_probs=22.1
Q ss_pred CCCCchHHHHHHHHHhcCCcEeec
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDC 24 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~ 24 (193)
|||+|||-+||.+|-+-|.|||.+
T Consensus 345 PPGTGKTlLARAvAGEA~VPFF~~ 368 (752)
T KOG0734|consen 345 PPGTGKTLLARAVAGEAGVPFFYA 368 (752)
T ss_pred CCCCchhHHHHHhhcccCCCeEec
Confidence 799999999999999999998853
No 304
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=94.10 E-value=0.034 Score=45.88 Aligned_cols=18 Identities=39% Similarity=0.331 Sum_probs=16.4
Q ss_pred CCCCchHHHHHHHHHhcC
Q 029455 1 MMGSGKTTVGKILSGVLG 18 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg 18 (193)
||||||||+++.+++.+.
T Consensus 44 p~GtGKT~la~~~~~~l~ 61 (337)
T PRK12402 44 PPGSGKTAAVRALARELY 61 (337)
T ss_pred CCCCCHHHHHHHHHHHhc
Confidence 799999999999999874
No 305
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.09 E-value=0.037 Score=46.36 Aligned_cols=25 Identities=28% Similarity=0.473 Sum_probs=22.7
Q ss_pred CCCCchHHHHHHHHHhcCCcEeech
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCD 25 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d 25 (193)
|||+|||-+|+++|++.|..|++.+
T Consensus 135 PpG~GKTmlAKA~Akeaga~fInv~ 159 (386)
T KOG0737|consen 135 PPGTGKTMLAKAIAKEAGANFINVS 159 (386)
T ss_pred CCCchHHHHHHHHHHHcCCCcceee
Confidence 8999999999999999999888643
No 306
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=94.09 E-value=0.033 Score=42.04 Aligned_cols=18 Identities=44% Similarity=0.403 Sum_probs=15.4
Q ss_pred CCCCchHHHHHHHHHhcC
Q 029455 1 MMGSGKTTVGKILSGVLG 18 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg 18 (193)
++||||||+.+.|...|.
T Consensus 14 ~sgsGKTTLi~~li~~l~ 31 (173)
T PRK10751 14 WSGTGKTTLLKKLIPALC 31 (173)
T ss_pred CCCChHHHHHHHHHHHHh
Confidence 589999999999987664
No 307
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.08 E-value=0.035 Score=49.30 Aligned_cols=19 Identities=42% Similarity=0.700 Sum_probs=17.7
Q ss_pred CCCCchHHHHHHHHHhcCC
Q 029455 1 MMGSGKTTVGKILSGVLGY 19 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~ 19 (193)
|+|+||||+|+.||+.+++
T Consensus 46 p~GvGKTTlAr~lAk~L~c 64 (546)
T PRK14957 46 TRGVGKTTLGRLLAKCLNC 64 (546)
T ss_pred CCCCCHHHHHHHHHHHhCC
Confidence 6999999999999999875
No 308
>PRK09183 transposase/IS protein; Provisional
Probab=94.06 E-value=0.054 Score=43.54 Aligned_cols=28 Identities=29% Similarity=0.335 Sum_probs=19.9
Q ss_pred CCCCchHHHHHHHHHhc---CC--cEeechHHH
Q 029455 1 MMGSGKTTVGKILSGVL---GY--SFFDCDTLI 28 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l---g~--~~~d~d~~~ 28 (193)
|||||||+++..|+..+ |. .+++..+++
T Consensus 110 p~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~ 142 (259)
T PRK09183 110 PSGVGKTHLAIALGYEAVRAGIKVRFTTAADLL 142 (259)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHH
Confidence 69999999999996543 43 355555554
No 309
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.02 E-value=0.036 Score=51.69 Aligned_cols=20 Identities=25% Similarity=0.463 Sum_probs=18.5
Q ss_pred CCCCchHHHHHHHHHhcCCc
Q 029455 1 MMGSGKTTVGKILSGVLGYS 20 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~ 20 (193)
|||+||||+|+.||+.+++.
T Consensus 46 PpGtGKTTLARiLAk~Lnce 65 (944)
T PRK14949 46 TRGVGKTSLARLFAKGLNCE 65 (944)
T ss_pred CCCCCHHHHHHHHHHhccCc
Confidence 69999999999999999874
No 310
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=94.01 E-value=0.036 Score=42.69 Aligned_cols=17 Identities=35% Similarity=0.305 Sum_probs=13.0
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
||||||||+...+...+
T Consensus 25 pPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 25 PPGTGKTTTLASIIAQL 41 (236)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHh
Confidence 79999997666666555
No 311
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.00 E-value=0.038 Score=43.56 Aligned_cols=23 Identities=30% Similarity=0.419 Sum_probs=18.1
Q ss_pred CCCCchHHHHHHHHHhcCCcEee
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFD 23 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d 23 (193)
|.||||||++..|+-.-++.+-.
T Consensus 38 PNGsGKSTLa~~i~G~p~Y~Vt~ 60 (251)
T COG0396 38 PNGSGKSTLAYTIMGHPKYEVTE 60 (251)
T ss_pred CCCCCHHHHHHHHhCCCCceEec
Confidence 78999999999998666554443
No 312
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=93.99 E-value=0.036 Score=47.92 Aligned_cols=18 Identities=39% Similarity=0.388 Sum_probs=16.7
Q ss_pred CCCCchHHHHHHHHHhcC
Q 029455 1 MMGSGKTTVGKILSGVLG 18 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg 18 (193)
|||+||||+|+.||..++
T Consensus 202 ppGtGKT~lA~~la~~l~ 219 (459)
T PRK11331 202 PPGVGKTFVARRLAYLLT 219 (459)
T ss_pred CCCCCHHHHHHHHHHHhc
Confidence 799999999999999875
No 313
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=93.98 E-value=0.035 Score=41.93 Aligned_cols=15 Identities=40% Similarity=0.547 Sum_probs=14.0
Q ss_pred CCCCchHHHHHHHHH
Q 029455 1 MMGSGKTTVGKILSG 15 (193)
Q Consensus 1 ~~GsGKSTia~~La~ 15 (193)
|+||||||+-+.+|.
T Consensus 37 PSG~GKStllk~va~ 51 (223)
T COG4619 37 PSGCGKSTLLKIVAS 51 (223)
T ss_pred CCCccHHHHHHHHHh
Confidence 799999999999985
No 314
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.94 E-value=0.037 Score=48.52 Aligned_cols=19 Identities=42% Similarity=0.527 Sum_probs=17.4
Q ss_pred CCCCchHHHHHHHHHhcCC
Q 029455 1 MMGSGKTTVGKILSGVLGY 19 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~ 19 (193)
|+|+||||+|+.||+.+++
T Consensus 43 p~G~GKTT~ArilAk~LnC 61 (491)
T PRK14964 43 ASGVGKTTCARIISLCLNC 61 (491)
T ss_pred CCCccHHHHHHHHHHHHcC
Confidence 6999999999999998865
No 315
>PRK12377 putative replication protein; Provisional
Probab=93.90 E-value=0.067 Score=42.78 Aligned_cols=31 Identities=16% Similarity=0.296 Sum_probs=23.0
Q ss_pred CCCCchHHHHHHHHHhc---CC--cEeechHHHHHH
Q 029455 1 MMGSGKTTVGKILSGVL---GY--SFFDCDTLIEQS 31 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l---g~--~~~d~d~~~~~~ 31 (193)
+||+|||+++..++..+ |. .+++..+++...
T Consensus 109 ~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l 144 (248)
T PRK12377 109 KPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRL 144 (248)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHH
Confidence 68999999999999877 33 455666665443
No 316
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=93.85 E-value=0.042 Score=40.67 Aligned_cols=17 Identities=41% Similarity=0.309 Sum_probs=14.9
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
++||||||++..|.+.+
T Consensus 7 ~~gsGKTtl~~~l~~~l 23 (155)
T TIGR00176 7 PKNSGKTTLIERLVKAL 23 (155)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 58999999999998865
No 317
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=93.83 E-value=0.063 Score=37.74 Aligned_cols=26 Identities=38% Similarity=0.540 Sum_probs=19.7
Q ss_pred CCCCchHHHHHHHHHhc---CCc--EeechH
Q 029455 1 MMGSGKTTVGKILSGVL---GYS--FFDCDT 26 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l---g~~--~~d~d~ 26 (193)
.+|+||||++..|+..+ |.+ ++|+|.
T Consensus 7 kgG~GKTt~a~~la~~l~~~g~~V~~id~D~ 37 (116)
T cd02034 7 KGGVGKTTIAALLARYLAEKGKPVLAIDADP 37 (116)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCcEEEEECCc
Confidence 37999999999998766 543 467664
No 318
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.82 E-value=0.054 Score=45.89 Aligned_cols=25 Identities=32% Similarity=0.538 Sum_probs=23.0
Q ss_pred CCCCchHHHHHHHHHhcCCcEeech
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCD 25 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d 25 (193)
|||+|||-+|+.+|.+-|..||+..
T Consensus 253 PPGTGKTlLAKAvATEc~tTFFNVS 277 (491)
T KOG0738|consen 253 PPGTGKTLLAKAVATECGTTFFNVS 277 (491)
T ss_pred CCCCcHHHHHHHHHHhhcCeEEEec
Confidence 7999999999999999999998754
No 319
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=93.80 E-value=0.048 Score=50.54 Aligned_cols=23 Identities=26% Similarity=0.495 Sum_probs=20.7
Q ss_pred CCCCchHHHHHHHHHhcCCcEee
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFD 23 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d 23 (193)
|||+||||+++.+++.++.+++.
T Consensus 357 ppG~GKTtl~~~ia~~l~~~~~~ 379 (784)
T PRK10787 357 PPGVGKTSLGQSIAKATGRKYVR 379 (784)
T ss_pred CCCCCHHHHHHHHHHHhCCCEEE
Confidence 79999999999999999988753
No 320
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=93.79 E-value=0.041 Score=41.00 Aligned_cols=18 Identities=39% Similarity=0.427 Sum_probs=14.7
Q ss_pred CCCCchHHHHHHHHHhcC
Q 029455 1 MMGSGKTTVGKILSGVLG 18 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg 18 (193)
++|+||||+.+.+.+.+.
T Consensus 32 ~~G~GKT~ll~~~~~~~~ 49 (185)
T PF13191_consen 32 ESGSGKTSLLRALLDRLA 49 (185)
T ss_dssp -TTSSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 589999999998877664
No 321
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=93.79 E-value=0.067 Score=40.52 Aligned_cols=32 Identities=22% Similarity=0.377 Sum_probs=24.9
Q ss_pred CCCCchHHHHHHHHHhc---C--CcEeechHHHHHHh
Q 029455 1 MMGSGKTTVGKILSGVL---G--YSFFDCDTLIEQSV 32 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l---g--~~~~d~d~~~~~~~ 32 (193)
+||+|||.+|..++.++ | ..|++..+++....
T Consensus 55 ~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~ 91 (178)
T PF01695_consen 55 PPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELK 91 (178)
T ss_dssp STTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHhccCCcceeEeecCceecccc
Confidence 68999999999998644 3 46778888876654
No 322
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=93.73 E-value=0.038 Score=43.22 Aligned_cols=15 Identities=33% Similarity=0.437 Sum_probs=13.2
Q ss_pred CCCCchHHHHHHHHH
Q 029455 1 MMGSGKTTVGKILSG 15 (193)
Q Consensus 1 ~~GsGKSTia~~La~ 15 (193)
|+||||||+.|.|=+
T Consensus 41 PSGcGKST~LR~lNR 55 (253)
T COG1117 41 PSGCGKSTLLRCLNR 55 (253)
T ss_pred CCCcCHHHHHHHHHh
Confidence 799999999998843
No 323
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.69 E-value=0.045 Score=48.47 Aligned_cols=20 Identities=40% Similarity=0.571 Sum_probs=18.3
Q ss_pred CCCCchHHHHHHHHHhcCCc
Q 029455 1 MMGSGKTTVGKILSGVLGYS 20 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~ 20 (193)
|+|+||||+|+.||+.+++.
T Consensus 46 p~G~GKTt~A~~lAk~l~c~ 65 (527)
T PRK14969 46 TRGVGKTTLARILAKSLNCE 65 (527)
T ss_pred CCCCCHHHHHHHHHHHhcCC
Confidence 69999999999999999863
No 324
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=93.67 E-value=0.053 Score=33.77 Aligned_cols=14 Identities=36% Similarity=0.432 Sum_probs=12.0
Q ss_pred CCCCchHHHHHHHH
Q 029455 1 MMGSGKTTVGKILS 14 (193)
Q Consensus 1 ~~GsGKSTia~~La 14 (193)
+.||||||+-..+.
T Consensus 31 ~nGsGKSTllDAi~ 44 (62)
T PF13555_consen 31 PNGSGKSTLLDAIQ 44 (62)
T ss_pred CCCCCHHHHHHHHH
Confidence 57999999998775
No 325
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=93.58 E-value=0.044 Score=42.27 Aligned_cols=17 Identities=29% Similarity=0.319 Sum_probs=14.5
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
++||||||+.+.|+-.+
T Consensus 35 ~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 35 PSGAGKSTLLKLIYKEE 51 (214)
T ss_pred CCCCCHHHHHHHHhcCC
Confidence 58999999999998543
No 326
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=93.58 E-value=0.046 Score=42.38 Aligned_cols=18 Identities=33% Similarity=0.493 Sum_probs=14.7
Q ss_pred CCCCchHHHHHHHHHhcC
Q 029455 1 MMGSGKTTVGKILSGVLG 18 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg 18 (193)
+||||||++|+.|..-|.
T Consensus 30 ppGtGKTmlA~~l~~lLP 47 (206)
T PF01078_consen 30 PPGTGKTMLARRLPSLLP 47 (206)
T ss_dssp -CCCTHHHHHHHHHHCS-
T ss_pred CCCCCHHHHHHHHHHhCC
Confidence 699999999999987653
No 327
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=93.57 E-value=0.045 Score=42.42 Aligned_cols=17 Identities=47% Similarity=0.585 Sum_probs=14.6
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
++||||||+.+.|+..+
T Consensus 38 ~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 38 PSGSGKSTLLNILGGLD 54 (218)
T ss_pred CCCCCHHHHHHHHhCCc
Confidence 68999999999998544
No 328
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=93.57 E-value=0.044 Score=42.45 Aligned_cols=17 Identities=35% Similarity=0.552 Sum_probs=14.6
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
++||||||+.+.|+-.+
T Consensus 37 ~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 37 HSGAGKSTFLKLILGIE 53 (216)
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 68999999999998643
No 329
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=93.54 E-value=0.055 Score=41.95 Aligned_cols=26 Identities=27% Similarity=0.422 Sum_probs=19.1
Q ss_pred CCCCchHHHHHHHHHhc---C--CcEeechH
Q 029455 1 MMGSGKTTVGKILSGVL---G--YSFFDCDT 26 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l---g--~~~~d~d~ 26 (193)
+|||||||+|..++... | ..+++++.
T Consensus 27 ~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e~ 57 (218)
T cd01394 27 PPGTGKTNIAIQLAVETAGQGKKVAYIDTEG 57 (218)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCeEEEEECCC
Confidence 69999999999998654 2 33666543
No 330
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.53 E-value=0.045 Score=48.19 Aligned_cols=19 Identities=26% Similarity=0.431 Sum_probs=17.5
Q ss_pred CCCCchHHHHHHHHHhcCC
Q 029455 1 MMGSGKTTVGKILSGVLGY 19 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~ 19 (193)
|||+||||+++.||+.+.+
T Consensus 44 ppGtGKTTlA~~lA~~l~c 62 (504)
T PRK14963 44 PRGVGKTTTARLIAMAVNC 62 (504)
T ss_pred CCCCCHHHHHHHHHHHHhc
Confidence 7999999999999999864
No 331
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=93.52 E-value=0.046 Score=47.18 Aligned_cols=17 Identities=29% Similarity=0.473 Sum_probs=15.5
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
+||+||||.|+.||+-+
T Consensus 271 ~PGaGKsTFaqAlAefy 287 (604)
T COG1855 271 APGAGKSTFAQALAEFY 287 (604)
T ss_pred CCCCChhHHHHHHHHHH
Confidence 69999999999999855
No 332
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=93.51 E-value=0.041 Score=49.05 Aligned_cols=18 Identities=22% Similarity=0.527 Sum_probs=16.3
Q ss_pred CCCCchHHHHHHHHHhcC
Q 029455 1 MMGSGKTTVGKILSGVLG 18 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg 18 (193)
|||+||||+++.|++.+.
T Consensus 111 PpG~GKSsLa~~la~~le 128 (644)
T PRK15455 111 PVGGGKSSLAERLKSLME 128 (644)
T ss_pred CCCCCchHHHHHHHHHHH
Confidence 899999999999998763
No 333
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.48 E-value=0.065 Score=44.71 Aligned_cols=23 Identities=30% Similarity=0.531 Sum_probs=21.0
Q ss_pred CCCCchHHHHHHHHHhcCCcEee
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFD 23 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d 23 (193)
|.|.|||.+||+||+-.|.||+-
T Consensus 58 pTGVGKTEIARRLAkl~~aPFiK 80 (444)
T COG1220 58 PTGVGKTEIARRLAKLAGAPFIK 80 (444)
T ss_pred CCCCcHHHHHHHHHHHhCCCeEE
Confidence 67999999999999999999874
No 334
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=93.47 E-value=0.047 Score=41.40 Aligned_cols=16 Identities=38% Similarity=0.522 Sum_probs=13.9
Q ss_pred CCCCchHHHHHHHHHh
Q 029455 1 MMGSGKTTVGKILSGV 16 (193)
Q Consensus 1 ~~GsGKSTia~~La~~ 16 (193)
++||||||+.+.|+-.
T Consensus 26 ~nGsGKSTLl~~i~G~ 41 (190)
T TIGR01166 26 ANGAGKSTLLLHLNGL 41 (190)
T ss_pred CCCCCHHHHHHHHhCC
Confidence 5899999999999753
No 335
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.46 E-value=0.07 Score=44.18 Aligned_cols=25 Identities=36% Similarity=0.493 Sum_probs=21.9
Q ss_pred CCCCchHHHHHHHHHhcCCcEeech
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCD 25 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d 25 (193)
|.|||||-+|+-||+.|+.||-=+|
T Consensus 105 PTGsGKTlLAqTLAk~LnVPFaiAD 129 (408)
T COG1219 105 PTGSGKTLLAQTLAKILNVPFAIAD 129 (408)
T ss_pred CCCCcHHHHHHHHHHHhCCCeeecc
Confidence 7899999999999999999886443
No 336
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=93.40 E-value=0.05 Score=41.94 Aligned_cols=17 Identities=47% Similarity=0.749 Sum_probs=14.5
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
++||||||+.+.|+-.+
T Consensus 35 ~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 35 PNGSGKSTLLRLLNGLL 51 (211)
T ss_pred CCCCCHHHHHHHHhcCC
Confidence 58999999999998543
No 337
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=93.40 E-value=0.06 Score=43.24 Aligned_cols=28 Identities=39% Similarity=0.561 Sum_probs=21.3
Q ss_pred CCCCchHHHHHHHHHhc----CCcEeechHHH
Q 029455 1 MMGSGKTTVGKILSGVL----GYSFFDCDTLI 28 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l----g~~~~d~d~~~ 28 (193)
|.||||||+.+.|+.-+ |-.+++...+.
T Consensus 36 pNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~ 67 (258)
T COG1120 36 PNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIA 67 (258)
T ss_pred CCCCCHHHHHHHHhccCCCCCCEEEECCCchh
Confidence 68999999999999755 34666665543
No 338
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=93.40 E-value=0.13 Score=42.54 Aligned_cols=32 Identities=22% Similarity=0.531 Sum_probs=24.9
Q ss_pred CCCCchHHHHHHHHHhcCCcEe--echHHHHHHh
Q 029455 1 MMGSGKTTVGKILSGVLGYSFF--DCDTLIEQSV 32 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~--d~d~~~~~~~ 32 (193)
|||.|||-+|+.++.++|+.++ .+..+.....
T Consensus 174 ppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~kyi 207 (388)
T KOG0651|consen 174 PPGTGKTLLARAVAATMGVNFLKVVSSALVDKYI 207 (388)
T ss_pred CCCCchhHHHHHHHHhcCCceEEeeHhhhhhhhc
Confidence 7999999999999999998765 4455544443
No 339
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=93.38 E-value=0.058 Score=41.57 Aligned_cols=18 Identities=39% Similarity=0.486 Sum_probs=15.4
Q ss_pred CCCCchHHHHHHHHHhcC
Q 029455 1 MMGSGKTTVGKILSGVLG 18 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg 18 (193)
++||||||+.+.+.+.+.
T Consensus 9 ~~GsGKTTll~~l~~~l~ 26 (199)
T TIGR00101 9 PVGSGKTALIEALTRALR 26 (199)
T ss_pred CCCCCHHHHHHHHHHhhC
Confidence 689999999999887653
No 340
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.38 E-value=0.05 Score=41.96 Aligned_cols=16 Identities=44% Similarity=0.598 Sum_probs=14.1
Q ss_pred CCCCchHHHHHHHHHh
Q 029455 1 MMGSGKTTVGKILSGV 16 (193)
Q Consensus 1 ~~GsGKSTia~~La~~ 16 (193)
++||||||+.+.|+-.
T Consensus 33 ~nGsGKSTLl~~l~Gl 48 (211)
T cd03264 33 PNGAGKTTLMRILATL 48 (211)
T ss_pred CCCCCHHHHHHHHhCC
Confidence 6899999999999853
No 341
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=93.38 E-value=0.058 Score=39.22 Aligned_cols=17 Identities=41% Similarity=0.319 Sum_probs=14.7
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
+.||||||+++.|...|
T Consensus 8 ~~~sGKTTl~~~Li~~l 24 (140)
T PF03205_consen 8 PKNSGKTTLIRKLINEL 24 (140)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 57999999999997765
No 342
>PRK13768 GTPase; Provisional
Probab=93.35 E-value=0.066 Score=42.85 Aligned_cols=26 Identities=50% Similarity=0.708 Sum_probs=18.9
Q ss_pred CCCCchHHHHHHHHHhc---CC--cEeechH
Q 029455 1 MMGSGKTTVGKILSGVL---GY--SFFDCDT 26 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l---g~--~~~d~d~ 26 (193)
++||||||++..++..+ |. .+++.|.
T Consensus 10 ~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~ 40 (253)
T PRK13768 10 TAGSGKTTLTKALSDWLEEQGYDVAIVNLDP 40 (253)
T ss_pred CCCccHHHHHHHHHHHHHhcCCceEEEECCC
Confidence 58999999998888665 33 3556553
No 343
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=93.33 E-value=0.05 Score=47.86 Aligned_cols=21 Identities=38% Similarity=0.504 Sum_probs=19.0
Q ss_pred CCCCchHHHHHHHHHhcCCcE
Q 029455 1 MMGSGKTTVGKILSGVLGYSF 21 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~ 21 (193)
|.|+||||+||.||+.|++..
T Consensus 46 ~RGvGKTt~Ari~AkalNC~~ 66 (515)
T COG2812 46 PRGVGKTTIARILAKALNCEN 66 (515)
T ss_pred CCCcCchhHHHHHHHHhcCCC
Confidence 579999999999999999864
No 344
>CHL00206 ycf2 Ycf2; Provisional
Probab=93.33 E-value=0.062 Score=53.68 Aligned_cols=28 Identities=18% Similarity=0.331 Sum_probs=24.1
Q ss_pred CCCCchHHHHHHHHHhcCCcEee--chHHH
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFD--CDTLI 28 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d--~d~~~ 28 (193)
|||||||.+|+.||...++|++. +.+++
T Consensus 1638 PPGTGKTlLAKALA~es~VPFIsISgs~fl 1667 (2281)
T CHL00206 1638 SIGTGRSYLVKYLATNSYVPFITVFLNKFL 1667 (2281)
T ss_pred CCCCCHHHHHHHHHHhcCCceEEEEHHHHh
Confidence 79999999999999999998875 45555
No 345
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.33 E-value=0.052 Score=41.82 Aligned_cols=17 Identities=35% Similarity=0.624 Sum_probs=14.5
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
++||||||+.+.|+-.+
T Consensus 34 ~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 34 PNGAGKTTTIRMILGII 50 (210)
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 58999999999998543
No 346
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=93.32 E-value=0.046 Score=43.95 Aligned_cols=25 Identities=32% Similarity=0.688 Sum_probs=18.6
Q ss_pred CCCchHHHHHHHHHhc----CCcEeechH
Q 029455 2 MGSGKTTVGKILSGVL----GYSFFDCDT 26 (193)
Q Consensus 2 ~GsGKSTia~~La~~l----g~~~~d~d~ 26 (193)
+||||||+|+.|..-+ |-.+++..+
T Consensus 48 SG~GKSTlgr~i~~L~~pt~G~i~f~g~~ 76 (268)
T COG4608 48 SGCGKSTLGRLILGLEEPTSGEILFEGKD 76 (268)
T ss_pred CCCCHHHHHHHHHcCcCCCCceEEEcCcc
Confidence 7999999999998644 345566544
No 347
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=93.28 E-value=0.053 Score=41.89 Aligned_cols=17 Identities=53% Similarity=0.684 Sum_probs=14.5
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
++||||||+.+.|+..+
T Consensus 36 ~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 36 PSGAGKTTLLKLLYGAL 52 (214)
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 58999999999998543
No 348
>PRK13695 putative NTPase; Provisional
Probab=93.25 E-value=0.059 Score=40.32 Aligned_cols=20 Identities=40% Similarity=0.556 Sum_probs=16.3
Q ss_pred CCCCchHHHHHHHHHhc---CCc
Q 029455 1 MMGSGKTTVGKILSGVL---GYS 20 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l---g~~ 20 (193)
++||||||+++.++..+ |+.
T Consensus 8 ~~G~GKTTll~~i~~~l~~~G~~ 30 (174)
T PRK13695 8 PPGVGKTTLVLKIAELLKEEGYK 30 (174)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCe
Confidence 58999999999987665 554
No 349
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.24 E-value=0.053 Score=42.56 Aligned_cols=17 Identities=41% Similarity=0.704 Sum_probs=14.7
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
++||||||+.+.|+..+
T Consensus 34 ~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 34 PSGSGKSTLLRLIVGLL 50 (235)
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 68999999999998644
No 350
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=93.24 E-value=0.053 Score=41.63 Aligned_cols=16 Identities=56% Similarity=0.873 Sum_probs=14.1
Q ss_pred CCCCchHHHHHHHHHh
Q 029455 1 MMGSGKTTVGKILSGV 16 (193)
Q Consensus 1 ~~GsGKSTia~~La~~ 16 (193)
++||||||+.+.|+-.
T Consensus 34 ~nGsGKSTLl~~l~Gl 49 (205)
T cd03226 34 KNGAGKTTLAKILAGL 49 (205)
T ss_pred CCCCCHHHHHHHHhcC
Confidence 6899999999999854
No 351
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=93.24 E-value=0.048 Score=38.82 Aligned_cols=17 Identities=53% Similarity=0.692 Sum_probs=14.4
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
++||||||+.+.|+..+
T Consensus 19 ~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 19 PNGSGKSTLLKALAGLL 35 (137)
T ss_dssp STTSSHHHHHHHHTTSS
T ss_pred cCCCccccceeeecccc
Confidence 57999999999997644
No 352
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=93.21 E-value=0.055 Score=41.97 Aligned_cols=17 Identities=53% Similarity=0.677 Sum_probs=14.5
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
++||||||+.+.|+-.+
T Consensus 36 ~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 36 HNGAGKTTTLKMLTGEL 52 (220)
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 68999999999998543
No 353
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=93.21 E-value=0.064 Score=40.72 Aligned_cols=18 Identities=39% Similarity=0.383 Sum_probs=15.3
Q ss_pred CCCCchHHHHHHHHHhcC
Q 029455 1 MMGSGKTTVGKILSGVLG 18 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg 18 (193)
++||||||+.+.|...+.
T Consensus 33 ~tGSGKTTll~aL~~~i~ 50 (186)
T cd01130 33 GTGSGKTTLLNALLAFIP 50 (186)
T ss_pred CCCCCHHHHHHHHHhhcC
Confidence 689999999999987553
No 354
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=93.20 E-value=0.062 Score=39.99 Aligned_cols=17 Identities=47% Similarity=0.456 Sum_probs=15.3
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
++||||||+++.|...+
T Consensus 9 ~~gsGKTTli~~L~~~l 25 (159)
T cd03116 9 YSGSGKTTLLEKLIPAL 25 (159)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 47999999999999876
No 355
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=93.20 E-value=0.053 Score=42.09 Aligned_cols=17 Identities=47% Similarity=0.636 Sum_probs=14.5
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
++||||||+.+.|+-.+
T Consensus 34 ~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 34 RNGAGKTTLLKTIMGLL 50 (222)
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 68999999999998543
No 356
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=93.17 E-value=0.052 Score=42.60 Aligned_cols=28 Identities=29% Similarity=0.284 Sum_probs=20.7
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHHHH
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQ 30 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~~~ 30 (193)
+||+||||+|+.|+. ...+++.|.....
T Consensus 20 ~~G~GKtt~a~~~~~--~~~~~~~d~~~~~ 47 (220)
T TIGR01618 20 KPGTGKTSTIKYLPG--KTLVLSFDMSSKV 47 (220)
T ss_pred CCCCCHHHHHHhcCC--CCEEEeccccchh
Confidence 599999999999962 3567777764433
No 357
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=93.17 E-value=0.056 Score=39.50 Aligned_cols=15 Identities=53% Similarity=0.762 Sum_probs=13.2
Q ss_pred CCCCchHHHHHHHHH
Q 029455 1 MMGSGKTTVGKILSG 15 (193)
Q Consensus 1 ~~GsGKSTia~~La~ 15 (193)
++|||||||++.|-.
T Consensus 9 ~~g~GKTTL~q~L~~ 23 (143)
T PF10662_consen 9 PSGSGKTTLAQALNG 23 (143)
T ss_pred CCCCCHHHHHHHHcC
Confidence 579999999999964
No 358
>PRK07952 DNA replication protein DnaC; Validated
Probab=93.13 E-value=0.092 Score=41.88 Aligned_cols=30 Identities=17% Similarity=0.337 Sum_probs=22.3
Q ss_pred CCCCchHHHHHHHHHhc---CC--cEeechHHHHH
Q 029455 1 MMGSGKTTVGKILSGVL---GY--SFFDCDTLIEQ 30 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l---g~--~~~d~d~~~~~ 30 (193)
+||+|||+++..++..+ |. .+++..+++..
T Consensus 107 ~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~ 141 (244)
T PRK07952 107 KPGTGKNHLAAAICNELLLRGKSVLIITVADIMSA 141 (244)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHH
Confidence 58999999999999887 33 35566665543
No 359
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=93.12 E-value=0.052 Score=42.57 Aligned_cols=17 Identities=47% Similarity=0.663 Sum_probs=14.5
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
++||||||+.+.|+-.+
T Consensus 34 ~nGsGKSTLl~~l~Gl~ 50 (236)
T cd03219 34 PNGAGKTTLFNLISGFL 50 (236)
T ss_pred CCCCCHHHHHHHHcCCC
Confidence 58999999999998543
No 360
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=93.11 E-value=0.059 Score=41.59 Aligned_cols=17 Identities=35% Similarity=0.550 Sum_probs=14.7
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
++||||||+.+.|+..+
T Consensus 34 ~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 34 PSGCGKTTTLRMIAGLE 50 (213)
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 58999999999998644
No 361
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.11 E-value=0.076 Score=46.75 Aligned_cols=23 Identities=26% Similarity=0.382 Sum_probs=21.2
Q ss_pred CCCCchHHHHHHHHHhcCCcEee
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFD 23 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d 23 (193)
|||||||++|..+|..-+|||+-
T Consensus 546 p~~sGKTaLAA~iA~~S~FPFvK 568 (744)
T KOG0741|consen 546 PPGSGKTALAAKIALSSDFPFVK 568 (744)
T ss_pred CCCCChHHHHHHHHhhcCCCeEE
Confidence 79999999999999999999873
No 362
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.10 E-value=0.058 Score=42.43 Aligned_cols=17 Identities=35% Similarity=0.624 Sum_probs=14.5
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
++||||||+.+.|+-.+
T Consensus 35 ~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 35 PSGAGKSTLLRCLNGLV 51 (241)
T ss_pred CCCCCHHHHHHHHhCCc
Confidence 68999999999998543
No 363
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.10 E-value=0.058 Score=42.25 Aligned_cols=17 Identities=29% Similarity=0.522 Sum_probs=14.8
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
++||||||+.+.|+..+
T Consensus 39 ~nGsGKSTLl~~l~G~~ 55 (233)
T cd03258 39 RSGAGKSTLIRCINGLE 55 (233)
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 58999999999998654
No 364
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=93.09 E-value=0.058 Score=48.84 Aligned_cols=20 Identities=35% Similarity=0.534 Sum_probs=18.3
Q ss_pred CCCCchHHHHHHHHHhcCCc
Q 029455 1 MMGSGKTTVGKILSGVLGYS 20 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~ 20 (193)
++|+||||+|+.||+.+++.
T Consensus 46 p~GvGKTTlAr~lAk~L~c~ 65 (647)
T PRK07994 46 TRGVGKTTIARLLAKGLNCE 65 (647)
T ss_pred CCCCCHHHHHHHHHHhhhhc
Confidence 68999999999999999873
No 365
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=93.06 E-value=0.06 Score=41.50 Aligned_cols=17 Identities=29% Similarity=0.317 Sum_probs=14.5
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
++||||||+.+.|+-.+
T Consensus 34 ~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 34 PSGSGKSTLLRCINLLE 50 (213)
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 58999999999998543
No 366
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=93.06 E-value=0.06 Score=42.26 Aligned_cols=17 Identities=41% Similarity=0.577 Sum_probs=14.5
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
++||||||+.+.|+-.+
T Consensus 43 ~nGsGKSTLl~~l~Gl~ 59 (233)
T PRK11629 43 SSGSGKSTLLHLLGGLD 59 (233)
T ss_pred CCCCCHHHHHHHHhcCC
Confidence 58999999999998543
No 367
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.06 E-value=0.06 Score=41.57 Aligned_cols=17 Identities=35% Similarity=0.591 Sum_probs=14.5
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
++||||||+.+.|+-.+
T Consensus 34 ~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 34 PSGCGKTTLLRLIAGLE 50 (213)
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 58999999999998543
No 368
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.05 E-value=0.06 Score=41.84 Aligned_cols=17 Identities=35% Similarity=0.595 Sum_probs=14.5
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
++||||||+.+.|+-.+
T Consensus 38 ~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 38 PSGCGKSTLLRIIAGLE 54 (220)
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 58999999999998543
No 369
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=93.05 E-value=0.061 Score=41.98 Aligned_cols=17 Identities=29% Similarity=0.438 Sum_probs=14.8
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
++||||||+.+.|+-.+
T Consensus 34 ~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 34 PSGCGKSTLLRLLNRLN 50 (227)
T ss_pred CCCCCHHHHHHHHHhhc
Confidence 58999999999998654
No 370
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=93.05 E-value=0.059 Score=42.46 Aligned_cols=17 Identities=24% Similarity=0.452 Sum_probs=14.5
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
++||||||+.+.|+-.+
T Consensus 36 ~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 36 PSGAGKSTLLRCINRLV 52 (243)
T ss_pred CCCCCHHHHHHHHhCCc
Confidence 68999999999998543
No 371
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=93.02 E-value=0.062 Score=41.19 Aligned_cols=17 Identities=35% Similarity=0.378 Sum_probs=14.5
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
++||||||+.+.|+-.+
T Consensus 32 ~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 32 ESGSGKSTLLNIIGLLE 48 (206)
T ss_pred CCCCCHHHHHHHHhcCC
Confidence 58999999999998543
No 372
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=93.02 E-value=0.058 Score=44.31 Aligned_cols=15 Identities=40% Similarity=0.718 Sum_probs=13.9
Q ss_pred CCCCchHHHHHHHHH
Q 029455 1 MMGSGKTTVGKILSG 15 (193)
Q Consensus 1 ~~GsGKSTia~~La~ 15 (193)
|+||||||+.+.+|-
T Consensus 36 pSGaGKsTlLRiIAG 50 (345)
T COG1118 36 PSGAGKSTLLRIIAG 50 (345)
T ss_pred CCCCcHHHHHHHHhC
Confidence 799999999999985
No 373
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=92.99 E-value=0.056 Score=41.76 Aligned_cols=16 Identities=38% Similarity=0.538 Sum_probs=14.0
Q ss_pred CCCCchHHHHHHHHHh
Q 029455 1 MMGSGKTTVGKILSGV 16 (193)
Q Consensus 1 ~~GsGKSTia~~La~~ 16 (193)
++||||||+.+.|+-.
T Consensus 33 ~nGsGKSTLl~~l~G~ 48 (213)
T cd03235 33 PNGAGKSTLLKAILGL 48 (213)
T ss_pred CCCCCHHHHHHHHcCC
Confidence 5899999999999754
No 374
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=92.98 E-value=0.073 Score=43.71 Aligned_cols=20 Identities=25% Similarity=0.351 Sum_probs=18.5
Q ss_pred CCCCchHHHHHHHHHhcCCc
Q 029455 1 MMGSGKTTVGKILSGVLGYS 20 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~ 20 (193)
|||+|||+.+..+|++|..+
T Consensus 65 PpGTGKTStalafar~L~~~ 84 (346)
T KOG0989|consen 65 PPGTGKTSTALAFARALNCE 84 (346)
T ss_pred CCCCcHhHHHHHHHHHhcCc
Confidence 89999999999999999873
No 375
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.94 E-value=0.065 Score=40.09 Aligned_cols=17 Identities=53% Similarity=0.696 Sum_probs=14.5
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
++||||||+.+.|+-.+
T Consensus 34 ~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 34 PNGAGKTTLIKIILGLL 50 (173)
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 58999999999998643
No 376
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=92.93 E-value=0.063 Score=41.57 Aligned_cols=15 Identities=40% Similarity=0.649 Sum_probs=13.5
Q ss_pred CCCCchHHHHHHHHH
Q 029455 1 MMGSGKTTVGKILSG 15 (193)
Q Consensus 1 ~~GsGKSTia~~La~ 15 (193)
|+||||||+.+.+|-
T Consensus 39 pSGcGKTTLLnl~AG 53 (259)
T COG4525 39 PSGCGKTTLLNLIAG 53 (259)
T ss_pred CCCccHHHHHHHHhc
Confidence 799999999999873
No 377
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=92.93 E-value=0.066 Score=39.87 Aligned_cols=17 Identities=29% Similarity=0.557 Sum_probs=14.6
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
++||||||+.+.|+..+
T Consensus 35 ~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 35 PSGTGKSSLFRALAGLW 51 (166)
T ss_pred CCCCCHHHHHHHHhcCC
Confidence 58999999999998644
No 378
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=92.92 E-value=0.067 Score=44.61 Aligned_cols=26 Identities=31% Similarity=0.395 Sum_probs=18.6
Q ss_pred CCCCchHHHHHHHHHhc---C--CcEeechH
Q 029455 1 MMGSGKTTVGKILSGVL---G--YSFFDCDT 26 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l---g--~~~~d~d~ 26 (193)
+|||||||++..|...+ | +.++..|.
T Consensus 64 ~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp 94 (332)
T PRK09435 64 VPGVGKSTFIEALGMHLIEQGHKVAVLAVDP 94 (332)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 69999999999876655 3 34555553
No 379
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.92 E-value=0.066 Score=40.24 Aligned_cols=16 Identities=38% Similarity=0.627 Sum_probs=14.0
Q ss_pred CCCCchHHHHHHHHHh
Q 029455 1 MMGSGKTTVGKILSGV 16 (193)
Q Consensus 1 ~~GsGKSTia~~La~~ 16 (193)
++||||||+.+.|+..
T Consensus 34 ~nGsGKSTLl~~l~G~ 49 (178)
T cd03229 34 PSGSGKSTLLRCIAGL 49 (178)
T ss_pred CCCCCHHHHHHHHhCC
Confidence 5899999999999854
No 380
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.91 E-value=0.065 Score=41.62 Aligned_cols=17 Identities=47% Similarity=0.575 Sum_probs=14.5
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
++||||||+.+.|+-.+
T Consensus 34 ~nGsGKSTLl~~i~G~~ 50 (220)
T cd03265 34 PNGAGKTTTIKMLTTLL 50 (220)
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 58999999999998543
No 381
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=92.91 E-value=0.066 Score=40.22 Aligned_cols=17 Identities=47% Similarity=0.675 Sum_probs=14.5
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
++||||||+.+.|+-.+
T Consensus 36 ~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 36 RSGSGKSTLLQLLTGDL 52 (178)
T ss_pred CCCCCHHHHHHHHhccC
Confidence 58999999999998543
No 382
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=92.90 E-value=0.084 Score=48.66 Aligned_cols=25 Identities=24% Similarity=0.321 Sum_probs=20.7
Q ss_pred CCCCchHHHHHHHHHhc----------CCcEeech
Q 029455 1 MMGSGKTTVGKILSGVL----------GYSFFDCD 25 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l----------g~~~~d~d 25 (193)
+||+|||++++.||+++ +..++..|
T Consensus 211 ~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~ 245 (731)
T TIGR02639 211 EPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLD 245 (731)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEec
Confidence 69999999999999987 66666544
No 383
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=92.88 E-value=0.063 Score=40.65 Aligned_cols=16 Identities=56% Similarity=0.677 Sum_probs=14.1
Q ss_pred CCCCchHHHHHHHHHh
Q 029455 1 MMGSGKTTVGKILSGV 16 (193)
Q Consensus 1 ~~GsGKSTia~~La~~ 16 (193)
++||||||+.+.|+-.
T Consensus 33 ~nGsGKSTLl~~l~Gl 48 (177)
T cd03222 33 PNGTGKTTAVKILAGQ 48 (177)
T ss_pred CCCChHHHHHHHHHcC
Confidence 5899999999999854
No 384
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.87 E-value=0.065 Score=42.21 Aligned_cols=17 Identities=41% Similarity=0.632 Sum_probs=14.7
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
++||||||+.+.|+-.+
T Consensus 36 ~nGsGKSTLl~~l~Gl~ 52 (239)
T cd03296 36 PSGSGKTTLLRLIAGLE 52 (239)
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 68999999999998644
No 385
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=92.85 E-value=0.067 Score=41.51 Aligned_cols=17 Identities=41% Similarity=0.577 Sum_probs=14.6
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
++||||||+.+.|+..+
T Consensus 39 ~nGsGKSTLl~~i~G~~ 55 (221)
T TIGR02211 39 SSGSGKSTLLHLLGGLD 55 (221)
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 68999999999998543
No 386
>PRK08181 transposase; Validated
Probab=92.83 E-value=0.12 Score=41.92 Aligned_cols=31 Identities=23% Similarity=0.354 Sum_probs=23.3
Q ss_pred CCCCchHHHHHHHHHhc---C--CcEeechHHHHHH
Q 029455 1 MMGSGKTTVGKILSGVL---G--YSFFDCDTLIEQS 31 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l---g--~~~~d~d~~~~~~ 31 (193)
|||+|||.++..++.++ | ..|+++.+++...
T Consensus 114 p~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l 149 (269)
T PRK08181 114 PPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKL 149 (269)
T ss_pred cCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHH
Confidence 69999999999998643 5 4566777776543
No 387
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=92.82 E-value=0.074 Score=43.47 Aligned_cols=25 Identities=32% Similarity=0.205 Sum_probs=18.6
Q ss_pred CCCCchHHHHHHHHHhc----CCcEeech
Q 029455 1 MMGSGKTTVGKILSGVL----GYSFFDCD 25 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l----g~~~~d~d 25 (193)
+|||||||+.+.|.+.+ +..++..|
T Consensus 112 ~pGsGKTTLl~~l~~~l~~~~~~~VI~gD 140 (290)
T PRK10463 112 SPGSGKTTLLTETLMRLKDSVPCAVIEGD 140 (290)
T ss_pred CCCCCHHHHHHHHHHHhccCCCEEEECCC
Confidence 59999999998887764 35555544
No 388
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=92.81 E-value=0.073 Score=41.43 Aligned_cols=17 Identities=41% Similarity=0.313 Sum_probs=15.2
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
+|||||||+.+.+.+..
T Consensus 6 ~pGsGKSt~i~~~~~~~ 22 (234)
T PF01443_consen 6 VPGSGKSTLIKKLLKDR 22 (234)
T ss_pred CCCCCHHHHHHHHHHhc
Confidence 59999999999999873
No 389
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=92.81 E-value=0.072 Score=43.24 Aligned_cols=17 Identities=35% Similarity=0.346 Sum_probs=15.3
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
++||||||++..|+..|
T Consensus 9 ~~gSGKTTLi~~Li~~L 25 (274)
T PRK14493 9 YKATGKTTLVERLVDRL 25 (274)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 47999999999998887
No 390
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=92.79 E-value=0.076 Score=47.64 Aligned_cols=19 Identities=32% Similarity=0.529 Sum_probs=17.6
Q ss_pred CCCCchHHHHHHHHHhcCC
Q 029455 1 MMGSGKTTVGKILSGVLGY 19 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~ 19 (193)
|+|+||||+|+.||+.+.+
T Consensus 46 P~GvGKTTlA~~lAk~L~C 64 (605)
T PRK05896 46 PRGIGKTSIAKIFAKAINC 64 (605)
T ss_pred CCCCCHHHHHHHHHHHhcC
Confidence 7999999999999999865
No 391
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=92.79 E-value=0.069 Score=42.13 Aligned_cols=17 Identities=24% Similarity=0.382 Sum_probs=14.5
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
++||||||+.+.|+-.+
T Consensus 36 ~nGsGKSTLl~~l~G~~ 52 (242)
T PRK11124 36 PSGAGKSSLLRVLNLLE 52 (242)
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 58999999999998543
No 392
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=92.78 E-value=0.079 Score=39.72 Aligned_cols=26 Identities=23% Similarity=0.156 Sum_probs=18.0
Q ss_pred CCCCchHHHHHHHHHhc---C--CcEeechH
Q 029455 1 MMGSGKTTVGKILSGVL---G--YSFFDCDT 26 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l---g--~~~~d~d~ 26 (193)
+||||||+++..++... | .-+++.+.
T Consensus 7 ~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~ 37 (187)
T cd01124 7 GPGTGKTTFALQFLYAGLARGEPGLYVTLEE 37 (187)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCcEEEEECCC
Confidence 69999999998876532 3 34565543
No 393
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=92.78 E-value=0.066 Score=41.85 Aligned_cols=17 Identities=53% Similarity=0.618 Sum_probs=14.7
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
++||||||+.+.|+-.+
T Consensus 34 ~nGsGKSTLl~~l~G~~ 50 (230)
T TIGR03410 34 RNGVGKTTLLKTLMGLL 50 (230)
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 58999999999998644
No 394
>PRK08116 hypothetical protein; Validated
Probab=92.78 E-value=0.11 Score=42.01 Aligned_cols=30 Identities=27% Similarity=0.519 Sum_probs=22.5
Q ss_pred CCCCchHHHHHHHHHhc---CC--cEeechHHHHH
Q 029455 1 MMGSGKTTVGKILSGVL---GY--SFFDCDTLIEQ 30 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l---g~--~~~d~d~~~~~ 30 (193)
++|||||+++..++..+ |. .+++..+++..
T Consensus 122 ~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~ 156 (268)
T PRK08116 122 SVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNR 156 (268)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHH
Confidence 58999999999999875 44 45566666544
No 395
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=92.77 E-value=0.069 Score=45.04 Aligned_cols=24 Identities=29% Similarity=0.596 Sum_probs=18.7
Q ss_pred CCCCchHHHHHHHHHhcC---CcEeec
Q 029455 1 MMGSGKTTVGKILSGVLG---YSFFDC 24 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg---~~~~d~ 24 (193)
|||+||||+|+.|+..-. +.|+..
T Consensus 170 ppG~GKTtlArlia~tsk~~Syrfvel 196 (554)
T KOG2028|consen 170 PPGTGKTTLARLIASTSKKHSYRFVEL 196 (554)
T ss_pred CCCCchHHHHHHHHhhcCCCceEEEEE
Confidence 799999999999987554 446653
No 396
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=92.77 E-value=0.066 Score=46.00 Aligned_cols=27 Identities=37% Similarity=0.445 Sum_probs=21.1
Q ss_pred CCCCchHHHHHHHHHhc----C--CcEeechHH
Q 029455 1 MMGSGKTTVGKILSGVL----G--YSFFDCDTL 27 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l----g--~~~~d~d~~ 27 (193)
|+||||||++..||..+ | ..++++|.+
T Consensus 231 ptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~ 263 (432)
T PRK12724 231 PTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNY 263 (432)
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCeEEEecccch
Confidence 68999999999999754 3 345777774
No 397
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=92.74 E-value=0.07 Score=40.28 Aligned_cols=17 Identities=29% Similarity=0.638 Sum_probs=14.7
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
++||||||+.+.|+..+
T Consensus 34 ~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 34 LVGNGQTELAEALFGLR 50 (182)
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 58999999999998654
No 398
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=92.74 E-value=0.87 Score=36.02 Aligned_cols=18 Identities=33% Similarity=0.270 Sum_probs=15.7
Q ss_pred CCCCchHHHHHHHHHhcC
Q 029455 1 MMGSGKTTVGKILSGVLG 18 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg 18 (193)
.|.|||||.|+.|.+.|.
T Consensus 9 ~P~SGKstrA~~L~~~l~ 26 (281)
T KOG3062|consen 9 LPCSGKSTRAVELREALK 26 (281)
T ss_pred CCCCCchhHHHHHHHHHH
Confidence 488999999999998773
No 399
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.74 E-value=0.07 Score=42.17 Aligned_cols=17 Identities=29% Similarity=0.556 Sum_probs=14.7
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
++||||||+.+.|+-.+
T Consensus 37 ~nGsGKSTLl~~l~Gl~ 53 (241)
T PRK14250 37 PSGAGKSTLIKLINRLI 53 (241)
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 58999999999998644
No 400
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=92.72 E-value=0.071 Score=41.40 Aligned_cols=16 Identities=50% Similarity=0.816 Sum_probs=14.1
Q ss_pred CCCCchHHHHHHHHHh
Q 029455 1 MMGSGKTTVGKILSGV 16 (193)
Q Consensus 1 ~~GsGKSTia~~La~~ 16 (193)
++||||||+.+.|+..
T Consensus 21 ~NGsGKSTLlk~i~Gl 36 (213)
T PRK15177 21 APGSGKTTLTRLLCGL 36 (213)
T ss_pred CCCCCHHHHHHHHhCC
Confidence 6899999999999854
No 401
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.71 E-value=0.078 Score=47.81 Aligned_cols=19 Identities=47% Similarity=0.623 Sum_probs=17.8
Q ss_pred CCCCchHHHHHHHHHhcCC
Q 029455 1 MMGSGKTTVGKILSGVLGY 19 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~ 19 (193)
++|+||||+++.||+.+++
T Consensus 46 p~GvGKTtlAr~lAk~LnC 64 (618)
T PRK14951 46 TRGVGKTTVSRILAKSLNC 64 (618)
T ss_pred CCCCCHHHHHHHHHHHhcC
Confidence 6899999999999999986
No 402
>PHA03133 thymidine kinase; Provisional
Probab=92.71 E-value=4.4 Score=34.18 Aligned_cols=26 Identities=31% Similarity=0.217 Sum_probs=21.7
Q ss_pred CeEEEEECCHHHHHHHHhccCCCCCCccc
Q 029455 87 GISVWLDVPLEALAQRIAAVGTDSRPLLH 115 (193)
Q Consensus 87 ~~vV~L~~~~~~~~~Rl~~~~~~~R~~~~ 115 (193)
+.+|+++.+.++-.+||.+| .|+...
T Consensus 195 ~NiVl~~L~~~E~~~RL~~R---~R~gE~ 220 (368)
T PHA03133 195 TNLVLGALPEAAHAERLAQR---QRPGER 220 (368)
T ss_pred CEEEEEeCCHHHHHHHHHHc---CCCccc
Confidence 58999999999999999985 566544
No 403
>COG3911 Predicted ATPase [General function prediction only]
Probab=92.70 E-value=0.077 Score=39.16 Aligned_cols=21 Identities=33% Similarity=0.420 Sum_probs=17.3
Q ss_pred CCCCchHHHHHHHHHhcCCcEe
Q 029455 1 MMGSGKTTVGKILSGVLGYSFF 22 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~ 22 (193)
-||+||||+.+.|++ -|+..+
T Consensus 17 gpGaGKTtLL~aLa~-~Gfatv 37 (183)
T COG3911 17 GPGAGKTTLLAALAR-AGFATV 37 (183)
T ss_pred CCCCcHHHHHHHHHH-cCceee
Confidence 389999999999986 577554
No 404
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=92.69 E-value=0.072 Score=41.66 Aligned_cols=17 Identities=35% Similarity=0.493 Sum_probs=14.5
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
++||||||+.+.|+-.+
T Consensus 34 ~nGsGKSTLl~~l~Gl~ 50 (232)
T cd03218 34 PNGAGKTTTFYMIVGLV 50 (232)
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 58999999999998543
No 405
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=92.69 E-value=0.076 Score=39.73 Aligned_cols=17 Identities=41% Similarity=0.778 Sum_probs=14.6
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
++||||||+.+.|+-.+
T Consensus 36 ~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 36 PSGSGKSTLARLILGLL 52 (173)
T ss_pred CCCCCHHHHHHHHHhcc
Confidence 58999999999998643
No 406
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=92.68 E-value=0.07 Score=42.01 Aligned_cols=16 Identities=44% Similarity=0.652 Sum_probs=14.3
Q ss_pred CCCCchHHHHHHHHHh
Q 029455 1 MMGSGKTTVGKILSGV 16 (193)
Q Consensus 1 ~~GsGKSTia~~La~~ 16 (193)
++||||||+.+.|+-.
T Consensus 34 ~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 34 PNGSGKSTLSKTIAGH 49 (243)
T ss_pred CCCCCHHHHHHHHhCC
Confidence 5899999999999864
No 407
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=92.67 E-value=0.073 Score=41.85 Aligned_cols=17 Identities=29% Similarity=0.446 Sum_probs=14.6
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
++||||||+.+.|+-.+
T Consensus 35 ~nGsGKSTLl~~l~G~~ 51 (236)
T TIGR03864 35 PNGAGKSTLFSLLTRLY 51 (236)
T ss_pred CCCCCHHHHHHHHhCCc
Confidence 58999999999998543
No 408
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=92.67 E-value=0.074 Score=40.55 Aligned_cols=17 Identities=24% Similarity=0.698 Sum_probs=14.5
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
++||||||+.+.|+-.+
T Consensus 34 ~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 34 ANGCGKSSLLRMIAGIM 50 (195)
T ss_pred CCCCCHHHHHHHHhcCC
Confidence 58999999999998643
No 409
>PRK06526 transposase; Provisional
Probab=92.62 E-value=0.077 Score=42.57 Aligned_cols=17 Identities=29% Similarity=0.153 Sum_probs=14.7
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
|||+|||+++..|+.++
T Consensus 106 p~GtGKThLa~al~~~a 122 (254)
T PRK06526 106 PPGTGKTHLAIGLGIRA 122 (254)
T ss_pred CCCCchHHHHHHHHHHH
Confidence 79999999999997654
No 410
>PRK04296 thymidine kinase; Provisional
Probab=92.61 E-value=0.076 Score=40.55 Aligned_cols=17 Identities=29% Similarity=0.049 Sum_probs=14.9
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
+|||||||++..++.++
T Consensus 10 ~~GsGKTT~~l~~~~~~ 26 (190)
T PRK04296 10 AMNSGKSTELLQRAYNY 26 (190)
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 57999999999988776
No 411
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.61 E-value=0.083 Score=47.69 Aligned_cols=20 Identities=25% Similarity=0.532 Sum_probs=18.6
Q ss_pred CCCCchHHHHHHHHHhcCCc
Q 029455 1 MMGSGKTTVGKILSGVLGYS 20 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~ 20 (193)
|+|+||||+|+.||+.+++.
T Consensus 46 p~GvGKttlA~~lAk~L~c~ 65 (620)
T PRK14954 46 LRGVGKTTAARVFAKAVNCQ 65 (620)
T ss_pred CCCCCHHHHHHHHHHHhCCC
Confidence 69999999999999999884
No 412
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=92.60 E-value=0.073 Score=41.43 Aligned_cols=17 Identities=41% Similarity=0.716 Sum_probs=14.5
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
++||||||+.+.|+..+
T Consensus 39 ~nGsGKSTLl~~l~G~~ 55 (228)
T cd03257 39 ESGSGKSTLARAILGLL 55 (228)
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 58999999999998543
No 413
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.60 E-value=0.076 Score=41.08 Aligned_cols=17 Identities=29% Similarity=0.548 Sum_probs=14.4
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
++||||||+.+.|+-.+
T Consensus 31 ~nGsGKSTLl~~l~G~~ 47 (214)
T cd03297 31 ASGAGKSTLLRCIAGLE 47 (214)
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 58999999999997543
No 414
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.58 E-value=0.42 Score=42.30 Aligned_cols=35 Identities=23% Similarity=0.414 Sum_probs=30.0
Q ss_pred CCCCchHHHHHHHHHhcCC---cEeechHHHHHHhCCCC
Q 029455 1 MMGSGKTTVGKILSGVLGY---SFFDCDTLIEQSVDGTS 36 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~---~~~d~d~~~~~~~~g~~ 36 (193)
|||+|||-+||.+.+-|+. .+++..++..... |.+
T Consensus 264 PPGTGKTLiARqIGkMLNArePKIVNGPeIL~KYV-GeS 301 (744)
T KOG0741|consen 264 PPGTGKTLIARQIGKMLNAREPKIVNGPEILNKYV-GES 301 (744)
T ss_pred CCCCChhHHHHHHHHHhcCCCCcccCcHHHHHHhh-ccc
Confidence 8999999999999999986 4788888887776 655
No 415
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=92.58 E-value=0.08 Score=42.91 Aligned_cols=27 Identities=37% Similarity=0.367 Sum_probs=21.0
Q ss_pred CCCCchHHHHHHHHHhc---CC--cEeechHH
Q 029455 1 MMGSGKTTVGKILSGVL---GY--SFFDCDTL 27 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l---g~--~~~d~d~~ 27 (193)
++|+||||++..||..+ |. .++++|.+
T Consensus 80 ~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~ 111 (272)
T TIGR00064 80 VNGVGKTTTIAKLANKLKKQGKSVLLAAGDTF 111 (272)
T ss_pred CCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCC
Confidence 68999999999998766 43 45777753
No 416
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=92.55 E-value=0.077 Score=41.44 Aligned_cols=17 Identities=47% Similarity=0.575 Sum_probs=14.6
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
++||||||+.+.|+-.+
T Consensus 41 ~nGsGKSTLlk~l~G~~ 57 (226)
T cd03234 41 SSGSGKTTLLDAISGRV 57 (226)
T ss_pred CCCCCHHHHHHHHhCcc
Confidence 68999999999998543
No 417
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=92.53 E-value=0.078 Score=41.05 Aligned_cols=16 Identities=44% Similarity=0.671 Sum_probs=14.0
Q ss_pred CCCCchHHHHHHHHHh
Q 029455 1 MMGSGKTTVGKILSGV 16 (193)
Q Consensus 1 ~~GsGKSTia~~La~~ 16 (193)
++||||||+.+.|+..
T Consensus 39 ~nGsGKSTLl~~l~Gl 54 (218)
T cd03266 39 PNGAGKTTTLRMLAGL 54 (218)
T ss_pred CCCCCHHHHHHHHhCC
Confidence 5899999999999854
No 418
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=92.52 E-value=0.078 Score=41.99 Aligned_cols=17 Identities=35% Similarity=0.337 Sum_probs=14.6
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
++||||||+.+.|+-.+
T Consensus 37 ~nGsGKSTLl~~l~G~~ 53 (250)
T PRK11264 37 PSGSGKTTLLRCINLLE 53 (250)
T ss_pred CCCCCHHHHHHHHhcCC
Confidence 58999999999998644
No 419
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=92.51 E-value=0.077 Score=40.13 Aligned_cols=14 Identities=36% Similarity=0.309 Sum_probs=12.7
Q ss_pred CCCCchHHHHHHHH
Q 029455 1 MMGSGKTTVGKILS 14 (193)
Q Consensus 1 ~~GsGKSTia~~La 14 (193)
|+||||||+.+.+.
T Consensus 29 ~nG~GKSTLl~~il 42 (176)
T cd03238 29 VSGSGKSTLVNEGL 42 (176)
T ss_pred CCCCCHHHHHHHHh
Confidence 68999999999885
No 420
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=92.50 E-value=0.082 Score=39.23 Aligned_cols=16 Identities=56% Similarity=0.779 Sum_probs=14.0
Q ss_pred CCCCchHHHHHHHHHh
Q 029455 1 MMGSGKTTVGKILSGV 16 (193)
Q Consensus 1 ~~GsGKSTia~~La~~ 16 (193)
++||||||+.+.|+-.
T Consensus 34 ~nGsGKSTLl~~i~G~ 49 (163)
T cd03216 34 ENGAGKSTLMKILSGL 49 (163)
T ss_pred CCCCCHHHHHHHHhCC
Confidence 5899999999999854
No 421
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.50 E-value=0.083 Score=39.44 Aligned_cols=17 Identities=41% Similarity=0.489 Sum_probs=14.7
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
++||||||+.+.|+-.+
T Consensus 36 ~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 36 PSGSGKSTLLKLLLRLY 52 (171)
T ss_pred CCCCCHHHHHHHHHcCC
Confidence 58999999999998654
No 422
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.48 E-value=0.087 Score=47.22 Aligned_cols=20 Identities=35% Similarity=0.512 Sum_probs=18.2
Q ss_pred CCCCchHHHHHHHHHhcCCc
Q 029455 1 MMGSGKTTVGKILSGVLGYS 20 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~ 20 (193)
|+|+||||+|+.||+.+++.
T Consensus 43 p~G~GKTt~A~~lAk~l~c~ 62 (584)
T PRK14952 43 PRGCGKTSSARILARSLNCA 62 (584)
T ss_pred CCCCCHHHHHHHHHHHhccc
Confidence 68999999999999999863
No 423
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=92.48 E-value=0.078 Score=42.37 Aligned_cols=17 Identities=24% Similarity=0.387 Sum_probs=14.6
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
++||||||+.+.|+..+
T Consensus 47 ~nGsGKSTLl~~l~Gl~ 63 (260)
T PRK10744 47 PSGCGKSTLLRTFNRMY 63 (260)
T ss_pred CCCCCHHHHHHHHhccc
Confidence 58999999999998543
No 424
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=92.47 E-value=0.075 Score=46.88 Aligned_cols=17 Identities=53% Similarity=0.896 Sum_probs=14.4
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
.+||||||+|+.|+.-+
T Consensus 325 eSGsGKSTlar~i~gL~ 341 (539)
T COG1123 325 ESGSGKSTLARILAGLL 341 (539)
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 48999999999998643
No 425
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.46 E-value=0.08 Score=41.32 Aligned_cols=17 Identities=35% Similarity=0.434 Sum_probs=14.8
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
++||||||+.+.|+-.+
T Consensus 37 ~nGsGKSTLl~~l~G~~ 53 (229)
T cd03254 37 PTGAGKTTLINLLMRFY 53 (229)
T ss_pred CCCCCHHHHHHHHhcCc
Confidence 68999999999998654
No 426
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.46 E-value=0.081 Score=40.32 Aligned_cols=15 Identities=47% Similarity=0.707 Sum_probs=13.6
Q ss_pred CCCCchHHHHHHHHH
Q 029455 1 MMGSGKTTVGKILSG 15 (193)
Q Consensus 1 ~~GsGKSTia~~La~ 15 (193)
++||||||+.+.|+-
T Consensus 41 ~nGsGKSTLl~~l~G 55 (192)
T cd03232 41 ESGAGKTTLLDVLAG 55 (192)
T ss_pred CCCCCHHHHHHHHhC
Confidence 589999999999984
No 427
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=92.45 E-value=0.08 Score=42.31 Aligned_cols=17 Identities=35% Similarity=0.610 Sum_probs=14.7
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
++||||||+.+.|+..+
T Consensus 35 ~nGsGKSTLl~~l~Gl~ 51 (255)
T PRK11248 35 PSGCGKTTLLNLIAGFV 51 (255)
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 58999999999998643
No 428
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=92.45 E-value=0.082 Score=41.32 Aligned_cols=16 Identities=38% Similarity=0.551 Sum_probs=14.0
Q ss_pred CCCCchHHHHHHHHHh
Q 029455 1 MMGSGKTTVGKILSGV 16 (193)
Q Consensus 1 ~~GsGKSTia~~La~~ 16 (193)
++||||||+.+.|+-.
T Consensus 41 ~nGsGKSTLl~~l~G~ 56 (225)
T PRK10247 41 PSGCGKSTLLKIVASL 56 (225)
T ss_pred CCCCCHHHHHHHHhcc
Confidence 5899999999999853
No 429
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=92.45 E-value=0.084 Score=43.79 Aligned_cols=26 Identities=35% Similarity=0.285 Sum_probs=20.1
Q ss_pred CCCCchHHHHHHHHHhc---C--CcEeechH
Q 029455 1 MMGSGKTTVGKILSGVL---G--YSFFDCDT 26 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l---g--~~~~d~d~ 26 (193)
|+||||||++..||..+ | ..++++|.
T Consensus 122 pnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~ 152 (318)
T PRK10416 122 VNGVGKTTTIGKLAHKYKAQGKKVLLAAGDT 152 (318)
T ss_pred CCCCcHHHHHHHHHHHHHhcCCeEEEEecCc
Confidence 68999999999998866 3 34456665
No 430
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=92.45 E-value=0.095 Score=43.75 Aligned_cols=17 Identities=35% Similarity=0.536 Sum_probs=16.1
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
+||+||||+++.|++-+
T Consensus 37 ~pG~gKT~lar~la~ll 53 (334)
T PRK13407 37 DRGTGKSTAVRALAALL 53 (334)
T ss_pred CCCCCHHHHHHHHHHHC
Confidence 69999999999999988
No 431
>PRK06835 DNA replication protein DnaC; Validated
Probab=92.44 E-value=0.12 Score=43.05 Aligned_cols=31 Identities=32% Similarity=0.437 Sum_probs=23.7
Q ss_pred CCCCchHHHHHHHHHhc---C--CcEeechHHHHHH
Q 029455 1 MMGSGKTTVGKILSGVL---G--YSFFDCDTLIEQS 31 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l---g--~~~~d~d~~~~~~ 31 (193)
++|+|||+++..+|..+ | +.++++++++...
T Consensus 191 ~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l 226 (329)
T PRK06835 191 NTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEIL 226 (329)
T ss_pred CCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHH
Confidence 58999999999999876 3 4566777766544
No 432
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.42 E-value=0.082 Score=41.40 Aligned_cols=17 Identities=29% Similarity=0.456 Sum_probs=14.7
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
++||||||+.+.|+-.+
T Consensus 36 ~nGsGKSTLl~~l~Gl~ 52 (234)
T cd03251 36 PSGSGKSTLVNLIPRFY 52 (234)
T ss_pred CCCCCHHHHHHHHhccc
Confidence 58999999999998644
No 433
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=92.40 E-value=0.084 Score=40.60 Aligned_cols=16 Identities=50% Similarity=0.640 Sum_probs=14.0
Q ss_pred CCCCchHHHHHHHHHh
Q 029455 1 MMGSGKTTVGKILSGV 16 (193)
Q Consensus 1 ~~GsGKSTia~~La~~ 16 (193)
++||||||+.+.|+-.
T Consensus 34 ~nGsGKSTLl~~l~Gl 49 (208)
T cd03268 34 PNGAGKTTTMKIILGL 49 (208)
T ss_pred CCCCCHHHHHHHHhCC
Confidence 5899999999999853
No 434
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.40 E-value=0.081 Score=41.93 Aligned_cols=17 Identities=29% Similarity=0.559 Sum_probs=14.7
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
++||||||+.+.|+-.+
T Consensus 37 ~nGsGKSTLl~~i~G~~ 53 (250)
T PRK14247 37 PSGSGKSTLLRVFNRLI 53 (250)
T ss_pred CCCCCHHHHHHHHhccC
Confidence 58999999999998653
No 435
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.39 E-value=0.082 Score=41.99 Aligned_cols=17 Identities=29% Similarity=0.469 Sum_probs=14.7
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
++||||||+.+.|+-.+
T Consensus 38 ~nGsGKSTLl~~l~G~~ 54 (253)
T PRK14267 38 PSGCGKSTLLRTFNRLL 54 (253)
T ss_pred CCCCCHHHHHHHHhccC
Confidence 58999999999998643
No 436
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=92.38 E-value=0.085 Score=41.18 Aligned_cols=17 Identities=47% Similarity=0.583 Sum_probs=14.5
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
++||||||+.+.|+-.+
T Consensus 44 ~nGsGKSTLl~~i~Gl~ 60 (228)
T PRK10584 44 ESGSGKSTLLAILAGLD 60 (228)
T ss_pred CCCCCHHHHHHHHHcCC
Confidence 58999999999998543
No 437
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=92.37 E-value=0.078 Score=42.06 Aligned_cols=15 Identities=53% Similarity=0.731 Sum_probs=13.3
Q ss_pred CCCCchHHHHHHHHH
Q 029455 1 MMGSGKTTVGKILSG 15 (193)
Q Consensus 1 ~~GsGKSTia~~La~ 15 (193)
++||||||+.+.|+-
T Consensus 38 ~nGsGKSTL~~~l~G 52 (235)
T COG1122 38 PNGSGKSTLLKLLNG 52 (235)
T ss_pred CCCCCHHHHHHHHcC
Confidence 589999999999974
No 438
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=92.36 E-value=0.083 Score=42.14 Aligned_cols=17 Identities=53% Similarity=0.517 Sum_probs=14.8
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
++||||||+.+.|+-.+
T Consensus 40 ~nGsGKSTLl~~l~Gl~ 56 (258)
T PRK11701 40 ESGSGKTTLLNALSARL 56 (258)
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 58999999999998654
No 439
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=92.36 E-value=0.086 Score=40.36 Aligned_cols=16 Identities=44% Similarity=0.721 Sum_probs=14.0
Q ss_pred CCCCchHHHHHHHHHh
Q 029455 1 MMGSGKTTVGKILSGV 16 (193)
Q Consensus 1 ~~GsGKSTia~~La~~ 16 (193)
++||||||+.+.|+-.
T Consensus 35 ~nGsGKSTLl~~i~G~ 50 (200)
T PRK13540 35 SNGAGKTTLLKLIAGL 50 (200)
T ss_pred CCCCCHHHHHHHHhcC
Confidence 5899999999999753
No 440
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=92.34 E-value=0.081 Score=38.46 Aligned_cols=17 Identities=41% Similarity=0.659 Sum_probs=14.5
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
++||||||+.+.|+..+
T Consensus 34 ~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 34 RNGAGKSTLLKLIAGEL 50 (144)
T ss_pred CCCCCHHHHHHHHcCCC
Confidence 58999999999997644
No 441
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=92.34 E-value=0.084 Score=42.10 Aligned_cols=16 Identities=38% Similarity=0.486 Sum_probs=14.2
Q ss_pred CCCCchHHHHHHHHHh
Q 029455 1 MMGSGKTTVGKILSGV 16 (193)
Q Consensus 1 ~~GsGKSTia~~La~~ 16 (193)
++||||||+.+.|+-.
T Consensus 38 ~nGsGKSTLl~~laGl 53 (258)
T PRK14241 38 PSGCGKSTVLRTLNRM 53 (258)
T ss_pred CCCCCHHHHHHHHhcc
Confidence 5899999999999864
No 442
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=92.34 E-value=0.084 Score=41.92 Aligned_cols=17 Identities=47% Similarity=0.552 Sum_probs=14.7
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
++||||||+.+.|+..+
T Consensus 37 ~nGsGKSTLl~~l~G~~ 53 (253)
T TIGR02323 37 ESGSGKSTLLGCLAGRL 53 (253)
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 58999999999998654
No 443
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=92.33 E-value=0.086 Score=41.87 Aligned_cols=16 Identities=31% Similarity=0.407 Sum_probs=14.1
Q ss_pred CCCCchHHHHHHHHHh
Q 029455 1 MMGSGKTTVGKILSGV 16 (193)
Q Consensus 1 ~~GsGKSTia~~La~~ 16 (193)
++||||||+.+.|+..
T Consensus 40 ~nGsGKSTLl~~l~Gl 55 (253)
T PRK14242 40 PSGCGKSTFLRCLNRM 55 (253)
T ss_pred CCCCCHHHHHHHHHhh
Confidence 5899999999999853
No 444
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=92.32 E-value=0.083 Score=41.43 Aligned_cols=17 Identities=35% Similarity=0.653 Sum_probs=14.6
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
++||||||+.+.|+-.+
T Consensus 33 ~nGsGKSTLl~~l~Gl~ 49 (232)
T PRK10771 33 PSGAGKSTLLNLIAGFL 49 (232)
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 58999999999998643
No 445
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=92.30 E-value=0.089 Score=39.62 Aligned_cols=17 Identities=47% Similarity=0.675 Sum_probs=14.5
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
++||||||+.+.|+..+
T Consensus 33 ~nGsGKStLl~~i~G~~ 49 (180)
T cd03214 33 PNGAGKSTLLKTLAGLL 49 (180)
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 58999999999998643
No 446
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=92.30 E-value=0.11 Score=47.47 Aligned_cols=26 Identities=38% Similarity=0.558 Sum_probs=23.4
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechH
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDT 26 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~ 26 (193)
+|||||||+.+..|+.||..++..|-
T Consensus 439 ~~g~GK~t~V~~vas~lg~h~~evdc 464 (953)
T KOG0736|consen 439 PPGSGKTTVVRAVASELGLHLLEVDC 464 (953)
T ss_pred CCCCChHHHHHHHHHHhCCceEeccH
Confidence 58999999999999999999987664
No 447
>PRK10908 cell division protein FtsE; Provisional
Probab=92.30 E-value=0.087 Score=40.97 Aligned_cols=17 Identities=35% Similarity=0.628 Sum_probs=14.4
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
++||||||+.+.|+-.+
T Consensus 36 ~nGsGKSTLl~~l~G~~ 52 (222)
T PRK10908 36 HSGAGKSTLLKLICGIE 52 (222)
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 58999999999998543
No 448
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=92.29 E-value=0.12 Score=43.51 Aligned_cols=18 Identities=33% Similarity=0.449 Sum_probs=17.5
Q ss_pred CCCCchHHHHHHHHHhcC
Q 029455 1 MMGSGKTTVGKILSGVLG 18 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg 18 (193)
|||||||.+|-.+|+.||
T Consensus 73 ppgTGKTAlA~gIa~eLG 90 (450)
T COG1224 73 PPGTGKTALAMGIARELG 90 (450)
T ss_pred CCCCcHHHHHHHHHHHhC
Confidence 799999999999999998
No 449
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=92.29 E-value=0.094 Score=47.75 Aligned_cols=20 Identities=40% Similarity=0.592 Sum_probs=18.1
Q ss_pred CCCCchHHHHHHHHHhcCCc
Q 029455 1 MMGSGKTTVGKILSGVLGYS 20 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~ 20 (193)
++|+||||+|+.|++.+++.
T Consensus 46 P~GvGKTTlAriLAk~LnC~ 65 (709)
T PRK08691 46 TRGVGKTTIARILAKSLNCE 65 (709)
T ss_pred CCCCcHHHHHHHHHHHhccc
Confidence 68999999999999998764
No 450
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=92.27 E-value=0.084 Score=41.35 Aligned_cols=17 Identities=35% Similarity=0.464 Sum_probs=14.7
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
++||||||+.+.|+-.+
T Consensus 20 ~nGsGKSTLl~~l~Gl~ 36 (230)
T TIGR02770 20 ESGSGKSLTCLAILGLL 36 (230)
T ss_pred CCCCCHHHHHHHHhcCC
Confidence 58999999999998643
No 451
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=92.27 E-value=0.095 Score=40.29 Aligned_cols=26 Identities=35% Similarity=0.453 Sum_probs=19.5
Q ss_pred CCCCchHHHHHHHHHhc---C--CcEeechH
Q 029455 1 MMGSGKTTVGKILSGVL---G--YSFFDCDT 26 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l---g--~~~~d~d~ 26 (193)
+||||||++|..++... | ..|++++.
T Consensus 20 ~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~ 50 (209)
T TIGR02237 20 PPGSGKTNICMILAVNAARQGKKVVYIDTEG 50 (209)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 69999999999988543 3 45666654
No 452
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=92.27 E-value=0.097 Score=38.37 Aligned_cols=25 Identities=32% Similarity=0.453 Sum_probs=18.8
Q ss_pred CCCCchHHHHHHHHHhc---CC--cEeech
Q 029455 1 MMGSGKTTVGKILSGVL---GY--SFFDCD 25 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l---g~--~~~d~d 25 (193)
++||||||++..|+..+ |. .+++.|
T Consensus 7 ~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D 36 (148)
T cd03114 7 VPGAGKSTLIDALITALRARGKRVAVLAID 36 (148)
T ss_pred CCCCcHHHHHHHHHHHHHHCCCEEEEEEeC
Confidence 47999999999998876 33 345555
No 453
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=92.25 E-value=0.099 Score=40.25 Aligned_cols=27 Identities=33% Similarity=0.348 Sum_probs=21.2
Q ss_pred CCCCchHHHHHHHHHhcC-----CcEeechHH
Q 029455 1 MMGSGKTTVGKILSGVLG-----YSFFDCDTL 27 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg-----~~~~d~d~~ 27 (193)
|+|+||||.+..||.++. ..++++|.+
T Consensus 9 ptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~ 40 (196)
T PF00448_consen 9 PTGVGKTTTIAKLAARLKLKGKKVALISADTY 40 (196)
T ss_dssp STTSSHHHHHHHHHHHHHHTT--EEEEEESTS
T ss_pred CCCCchHhHHHHHHHHHhhccccceeecCCCC
Confidence 689999999999987763 456777764
No 454
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=92.24 E-value=0.1 Score=36.09 Aligned_cols=15 Identities=33% Similarity=0.412 Sum_probs=13.5
Q ss_pred CCCCchHHHHHHHHH
Q 029455 1 MMGSGKTTVGKILSG 15 (193)
Q Consensus 1 ~~GsGKSTia~~La~ 15 (193)
+||+||||+.+.|..
T Consensus 7 ~~~~GKSTlin~l~~ 21 (116)
T PF01926_consen 7 RPNVGKSTLINALTG 21 (116)
T ss_dssp STTSSHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHhc
Confidence 589999999999974
No 455
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.22 E-value=0.09 Score=41.50 Aligned_cols=17 Identities=41% Similarity=0.575 Sum_probs=14.7
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
++||||||+.+.|+-.+
T Consensus 35 ~nGsGKSTLl~~l~G~~ 51 (242)
T cd03295 35 PSGSGKTTTMKMINRLI 51 (242)
T ss_pred CCCCCHHHHHHHHhcCC
Confidence 68999999999998644
No 456
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=92.22 E-value=0.087 Score=41.83 Aligned_cols=17 Identities=41% Similarity=0.485 Sum_probs=14.6
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
++||||||+.+.|+-.+
T Consensus 34 ~nGsGKSTLl~~l~G~~ 50 (252)
T TIGR03005 34 PSGSGKSTILRILMTLE 50 (252)
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 58999999999998644
No 457
>PRK13531 regulatory ATPase RavA; Provisional
Probab=92.20 E-value=0.09 Score=45.99 Aligned_cols=18 Identities=17% Similarity=0.146 Sum_probs=16.2
Q ss_pred CCCCchHHHHHHHHHhcC
Q 029455 1 MMGSGKTTVGKILSGVLG 18 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg 18 (193)
|||+|||++|+.|++..+
T Consensus 47 pPGTGKT~LAraLa~~~~ 64 (498)
T PRK13531 47 PPGIAKSLIARRLKFAFQ 64 (498)
T ss_pred CCChhHHHHHHHHHHHhc
Confidence 799999999999998664
No 458
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=92.19 E-value=0.11 Score=35.80 Aligned_cols=16 Identities=38% Similarity=0.418 Sum_probs=13.9
Q ss_pred CCCCchHHHHHHHHHh
Q 029455 1 MMGSGKTTVGKILSGV 16 (193)
Q Consensus 1 ~~GsGKSTia~~La~~ 16 (193)
.+||||||+.+.|...
T Consensus 7 ~~g~GKTsLi~~l~~~ 22 (119)
T PF08477_consen 7 DSGVGKTSLIRRLCGG 22 (119)
T ss_dssp STTSSHHHHHHHHHHS
T ss_pred cCCCCHHHHHHHHhcC
Confidence 4799999999999864
No 459
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=92.18 E-value=0.09 Score=41.29 Aligned_cols=17 Identities=35% Similarity=0.556 Sum_probs=14.6
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
++||||||+.+.|+-.+
T Consensus 36 ~nGsGKSTLl~~l~Gl~ 52 (237)
T cd03252 36 RSGSGKSTLTKLIQRFY 52 (237)
T ss_pred CCCCCHHHHHHHHhcCc
Confidence 58999999999998544
No 460
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.17 E-value=0.08 Score=40.70 Aligned_cols=17 Identities=35% Similarity=0.286 Sum_probs=14.5
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
++||||||+.+.|+-.+
T Consensus 41 ~nGsGKSTLl~~l~G~~ 57 (202)
T cd03233 41 RPGSGCSTLLKALANRT 57 (202)
T ss_pred CCCCCHHHHHHHhcccC
Confidence 58999999999998643
No 461
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=92.17 E-value=0.091 Score=41.03 Aligned_cols=17 Identities=35% Similarity=0.571 Sum_probs=14.7
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
++||||||+.+.|+..+
T Consensus 14 ~nGsGKSTLl~~l~G~~ 30 (223)
T TIGR03771 14 PNGAGKTTLLRAILGLI 30 (223)
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 58999999999998643
No 462
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=92.17 E-value=0.094 Score=40.69 Aligned_cols=16 Identities=31% Similarity=0.331 Sum_probs=14.1
Q ss_pred CCCCchHHHHHHHHHh
Q 029455 1 MMGSGKTTVGKILSGV 16 (193)
Q Consensus 1 ~~GsGKSTia~~La~~ 16 (193)
++||||||+.+.|+-.
T Consensus 38 ~nGsGKSTLl~~l~G~ 53 (221)
T cd03244 38 RTGSGKSSLLLALFRL 53 (221)
T ss_pred CCCCCHHHHHHHHHcC
Confidence 5899999999999854
No 463
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=92.15 E-value=0.093 Score=41.16 Aligned_cols=17 Identities=35% Similarity=0.608 Sum_probs=14.6
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
++||||||+.+.|+-.+
T Consensus 19 ~nGsGKSTLl~~l~Gl~ 35 (230)
T TIGR01184 19 HSGCGKSTLLNLISGLA 35 (230)
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 58999999999998644
No 464
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=92.15 E-value=0.081 Score=46.25 Aligned_cols=27 Identities=37% Similarity=0.587 Sum_probs=19.3
Q ss_pred CCCCchHHHHHHHHHhc----CCcEeechHH
Q 029455 1 MMGSGKTTVGKILSGVL----GYSFFDCDTL 27 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l----g~~~~d~d~~ 27 (193)
|+||||||++|.|.--. |-..+|.-++
T Consensus 370 PSgSGKSTLaR~lvG~w~p~~G~VRLDga~l 400 (580)
T COG4618 370 PSGSGKSTLARLLVGIWPPTSGSVRLDGADL 400 (580)
T ss_pred CCCccHHHHHHHHHcccccCCCcEEecchhh
Confidence 79999999999996432 3455665554
No 465
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=92.15 E-value=0.093 Score=40.57 Aligned_cols=17 Identities=29% Similarity=0.630 Sum_probs=14.5
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
++||||||+.+.|+..+
T Consensus 32 ~nGsGKSTLl~~l~G~~ 48 (213)
T TIGR01277 32 PSGAGKSTLLNLIAGFI 48 (213)
T ss_pred CCCCCHHHHHHHHhcCC
Confidence 58999999999998543
No 466
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=92.14 E-value=0.094 Score=40.18 Aligned_cols=15 Identities=33% Similarity=0.649 Sum_probs=13.7
Q ss_pred CCCCchHHHHHHHHH
Q 029455 1 MMGSGKTTVGKILSG 15 (193)
Q Consensus 1 ~~GsGKSTia~~La~ 15 (193)
|+||||||+-+.+|-
T Consensus 33 pSGaGKSTLLnLIAG 47 (231)
T COG3840 33 PSGAGKSTLLNLIAG 47 (231)
T ss_pred CCCccHHHHHHHHHh
Confidence 689999999999984
No 467
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=92.13 E-value=0.094 Score=40.30 Aligned_cols=17 Identities=41% Similarity=0.653 Sum_probs=14.5
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
++||||||+.+.|+..+
T Consensus 35 ~nGsGKSTLl~~l~G~~ 51 (204)
T PRK13538 35 PNGAGKTSLLRILAGLA 51 (204)
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 58999999999998643
No 468
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.12 E-value=0.094 Score=41.86 Aligned_cols=17 Identities=35% Similarity=0.389 Sum_probs=14.6
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
++||||||+.+.|+-.+
T Consensus 46 ~nGsGKSTLl~~l~G~~ 62 (259)
T PRK14274 46 PSGCGKSTFIKTLNLMI 62 (259)
T ss_pred CCCCCHHHHHHHHHhhc
Confidence 58999999999998643
No 469
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=92.12 E-value=0.093 Score=41.33 Aligned_cols=17 Identities=29% Similarity=0.382 Sum_probs=14.6
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
++||||||+.+.|+-.+
T Consensus 35 ~nGsGKSTLl~~l~G~~ 51 (240)
T PRK09493 35 PSGSGKSTLLRCINKLE 51 (240)
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 58999999999998644
No 470
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.10 E-value=0.093 Score=42.19 Aligned_cols=17 Identities=41% Similarity=0.718 Sum_probs=14.7
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
++||||||+.+.|+-.+
T Consensus 43 ~nGsGKSTLl~~i~Gl~ 59 (269)
T PRK13648 43 HNGSGKSTIAKLMIGIE 59 (269)
T ss_pred CCCCCHHHHHHHHhcCC
Confidence 68999999999998644
No 471
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=92.10 E-value=0.12 Score=43.73 Aligned_cols=17 Identities=41% Similarity=0.319 Sum_probs=15.5
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
+||+||||+++.+++.+
T Consensus 63 ~~GtGKT~l~~~v~~~l 79 (394)
T PRK00411 63 PPGTGKTTTVKKVFEEL 79 (394)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 69999999999998876
No 472
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=92.08 E-value=0.095 Score=41.19 Aligned_cols=17 Identities=35% Similarity=0.472 Sum_probs=14.7
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
++||||||+.+.|+-.+
T Consensus 37 ~nGsGKSTLl~~i~G~~ 53 (238)
T cd03249 37 SSGCGKSTVVSLLERFY 53 (238)
T ss_pred CCCCCHHHHHHHHhccC
Confidence 58999999999998654
No 473
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.07 E-value=0.096 Score=40.36 Aligned_cols=17 Identities=35% Similarity=0.542 Sum_probs=14.5
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
++||||||+.+.|+..+
T Consensus 32 ~nGsGKSTLl~~l~gl~ 48 (211)
T cd03298 32 PSGSGKSTLLNLIAGFE 48 (211)
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 58999999999998543
No 474
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.07 E-value=0.094 Score=41.61 Aligned_cols=16 Identities=31% Similarity=0.393 Sum_probs=14.0
Q ss_pred CCCCchHHHHHHHHHh
Q 029455 1 MMGSGKTTVGKILSGV 16 (193)
Q Consensus 1 ~~GsGKSTia~~La~~ 16 (193)
++||||||+.+.|+..
T Consensus 39 ~nGsGKSTLl~~l~Gl 54 (252)
T PRK14255 39 PSGCGKSTYLRTLNRM 54 (252)
T ss_pred CCCCCHHHHHHHHhcc
Confidence 5899999999999853
No 475
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.04 E-value=0.097 Score=41.57 Aligned_cols=17 Identities=29% Similarity=0.374 Sum_probs=14.8
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
++||||||+.+.|+-.+
T Consensus 38 ~nGsGKSTLl~~l~Gl~ 54 (252)
T PRK14256 38 PSGCGKSTVLRSINRMH 54 (252)
T ss_pred CCCCCHHHHHHHHHhcc
Confidence 58999999999998653
No 476
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=92.04 E-value=0.098 Score=40.13 Aligned_cols=17 Identities=41% Similarity=0.552 Sum_probs=14.4
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
++||||||+.+.|+-.+
T Consensus 39 ~nG~GKSTLl~~i~G~~ 55 (204)
T cd03250 39 PVGSGKSSLLSALLGEL 55 (204)
T ss_pred CCCCCHHHHHHHHhCcC
Confidence 68999999999997543
No 477
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=92.04 E-value=0.092 Score=41.71 Aligned_cols=17 Identities=47% Similarity=0.550 Sum_probs=14.6
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
++||||||+.+.|+..+
T Consensus 39 ~nGsGKSTLl~~l~Gl~ 55 (255)
T PRK11300 39 PNGAGKTTVFNCLTGFY 55 (255)
T ss_pred CCCCCHHHHHHHHhCCc
Confidence 58999999999998643
No 478
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=92.03 E-value=0.1 Score=41.76 Aligned_cols=19 Identities=21% Similarity=0.197 Sum_probs=16.5
Q ss_pred CCCCchHHHHHHHHHhcCC
Q 029455 1 MMGSGKTTVGKILSGVLGY 19 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~ 19 (193)
++|+||||+++.++..+..
T Consensus 24 ~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 24 PPKAGKTTLLQSIANAITK 42 (249)
T ss_pred CCCCCHHHHHHHHHhcccc
Confidence 6899999999999987653
No 479
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=92.03 E-value=0.097 Score=41.24 Aligned_cols=17 Identities=35% Similarity=0.499 Sum_probs=14.8
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
++||||||+.+.|+-.+
T Consensus 37 ~nGsGKSTLl~~l~G~~ 53 (241)
T PRK10895 37 PNGAGKTTTFYMVVGIV 53 (241)
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 58999999999998654
No 480
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=92.03 E-value=0.096 Score=41.50 Aligned_cols=15 Identities=33% Similarity=0.410 Sum_probs=13.7
Q ss_pred CCCCchHHHHHHHHH
Q 029455 1 MMGSGKTTVGKILSG 15 (193)
Q Consensus 1 ~~GsGKSTia~~La~ 15 (193)
++||||||+.+.|+-
T Consensus 37 ~nGsGKSTLl~~i~G 51 (250)
T PRK14240 37 PSGCGKSTFLRTLNR 51 (250)
T ss_pred CCCCCHHHHHHHHhc
Confidence 589999999999985
No 481
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=92.02 E-value=0.098 Score=40.54 Aligned_cols=16 Identities=50% Similarity=0.821 Sum_probs=14.1
Q ss_pred CCCCchHHHHHHHHHh
Q 029455 1 MMGSGKTTVGKILSGV 16 (193)
Q Consensus 1 ~~GsGKSTia~~La~~ 16 (193)
++||||||+.+.|+..
T Consensus 38 ~nGsGKSTLl~~i~G~ 53 (220)
T cd03245 38 RVGSGKSTLLKLLAGL 53 (220)
T ss_pred CCCCCHHHHHHHHhcC
Confidence 6899999999999854
No 482
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=92.02 E-value=0.097 Score=41.67 Aligned_cols=17 Identities=59% Similarity=0.694 Sum_probs=14.7
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
++||||||+.+.|+-.+
T Consensus 33 ~NGsGKSTLlk~L~G~~ 49 (246)
T cd03237 33 PNGIGKTTFIKMLAGVL 49 (246)
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 58999999999998654
No 483
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=92.02 E-value=0.11 Score=41.01 Aligned_cols=25 Identities=40% Similarity=0.595 Sum_probs=20.5
Q ss_pred CCCchHHHHHHHHHhc---C--CcEeechH
Q 029455 2 MGSGKTTVGKILSGVL---G--YSFFDCDT 26 (193)
Q Consensus 2 ~GsGKSTia~~La~~l---g--~~~~d~d~ 26 (193)
-|+||||.+..||..| | ...||+|.
T Consensus 11 GGaGKTT~~~~LAs~la~~G~~V~lIDaDp 40 (231)
T PF07015_consen 11 GGAGKTTAAMALASELAARGARVALIDADP 40 (231)
T ss_pred CCCcHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 3999999999999877 3 46788885
No 484
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.01 E-value=0.098 Score=42.02 Aligned_cols=16 Identities=25% Similarity=0.368 Sum_probs=14.1
Q ss_pred CCCCchHHHHHHHHHh
Q 029455 1 MMGSGKTTVGKILSGV 16 (193)
Q Consensus 1 ~~GsGKSTia~~La~~ 16 (193)
++||||||+.+.|+-.
T Consensus 55 ~nGsGKSTLl~~l~Gl 70 (268)
T PRK14248 55 PSGCGKSTFLRSINRM 70 (268)
T ss_pred CCCCCHHHHHHHHHhc
Confidence 5899999999999863
No 485
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=92.01 E-value=0.1 Score=39.89 Aligned_cols=17 Identities=53% Similarity=0.718 Sum_probs=14.4
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
+.||||||+.+.|+-.+
T Consensus 34 ~nGsGKSTLl~~l~G~~ 50 (198)
T TIGR01189 34 PNGIGKTTLLRILAGLL 50 (198)
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 58999999999998643
No 486
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=91.99 E-value=0.099 Score=40.68 Aligned_cols=17 Identities=35% Similarity=0.333 Sum_probs=14.5
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
++||||||+.+.|+..+
T Consensus 42 ~nGsGKSTLl~~i~G~~ 58 (224)
T TIGR02324 42 PSGAGKSTLLKSLYANY 58 (224)
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 58999999999998643
No 487
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=91.98 E-value=0.1 Score=40.71 Aligned_cols=17 Identities=41% Similarity=0.511 Sum_probs=14.6
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
++||||||+.+.|+-.+
T Consensus 48 ~nGsGKSTLl~~l~Gl~ 64 (226)
T cd03248 48 PSGSGKSTVVALLENFY 64 (226)
T ss_pred CCCCCHHHHHHHHhcCc
Confidence 58999999999998543
No 488
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=91.97 E-value=0.099 Score=41.91 Aligned_cols=17 Identities=35% Similarity=0.608 Sum_probs=14.8
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
++||||||+.+.|+..+
T Consensus 46 ~NGsGKSTLlk~l~Gl~ 62 (257)
T PRK11247 46 RSGCGKSTLLRLLAGLE 62 (257)
T ss_pred CCCCCHHHHHHHHhcCC
Confidence 58999999999998654
No 489
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=91.96 E-value=0.097 Score=40.91 Aligned_cols=16 Identities=38% Similarity=0.736 Sum_probs=14.1
Q ss_pred CCCCchHHHHHHHHHh
Q 029455 1 MMGSGKTTVGKILSGV 16 (193)
Q Consensus 1 ~~GsGKSTia~~La~~ 16 (193)
++||||||+.+.|+-.
T Consensus 56 ~nGsGKSTLl~~l~G~ 71 (224)
T cd03220 56 RNGAGKSTLLRLLAGI 71 (224)
T ss_pred CCCCCHHHHHHHHhCC
Confidence 5899999999999853
No 490
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=91.94 E-value=0.097 Score=37.10 Aligned_cols=16 Identities=25% Similarity=0.343 Sum_probs=13.9
Q ss_pred CCCCchHHHHHHHHHh
Q 029455 1 MMGSGKTTVGKILSGV 16 (193)
Q Consensus 1 ~~GsGKSTia~~La~~ 16 (193)
++||||||+.+.|...
T Consensus 4 ~~gsGKstl~~~l~~~ 19 (163)
T cd00880 4 RTNAGKSSLLNALLGQ 19 (163)
T ss_pred CCCCCHHHHHHHHhCc
Confidence 5899999999999754
No 491
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=91.94 E-value=0.099 Score=41.54 Aligned_cols=15 Identities=27% Similarity=0.392 Sum_probs=13.7
Q ss_pred CCCCchHHHHHHHHH
Q 029455 1 MMGSGKTTVGKILSG 15 (193)
Q Consensus 1 ~~GsGKSTia~~La~ 15 (193)
++||||||+.+.|+.
T Consensus 40 ~nGsGKSTLl~~l~G 54 (253)
T PRK14261 40 PSGCGKSTLLRCFNR 54 (253)
T ss_pred CCCCCHHHHHHHHhc
Confidence 589999999999984
No 492
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=91.92 E-value=0.1 Score=40.08 Aligned_cols=16 Identities=31% Similarity=0.291 Sum_probs=13.9
Q ss_pred CCCCchHHHHHHHHHh
Q 029455 1 MMGSGKTTVGKILSGV 16 (193)
Q Consensus 1 ~~GsGKSTia~~La~~ 16 (193)
++||||||+.+.|+-.
T Consensus 42 ~nGsGKSTLl~~l~Gl 57 (207)
T cd03369 42 RTGAGKSTLILALFRF 57 (207)
T ss_pred CCCCCHHHHHHHHhcc
Confidence 5899999999999753
No 493
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=91.91 E-value=0.11 Score=41.74 Aligned_cols=17 Identities=35% Similarity=0.335 Sum_probs=14.5
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
|||+||||+...|.+.+
T Consensus 37 ~PGaGKSTli~~l~~~~ 53 (266)
T PF03308_consen 37 PPGAGKSTLIDALIREL 53 (266)
T ss_dssp -TTSSHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHH
Confidence 69999999999998766
No 494
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=91.90 E-value=0.069 Score=48.29 Aligned_cols=21 Identities=48% Similarity=0.521 Sum_probs=18.9
Q ss_pred CCCCchHHHHHHHHHhcCCcE
Q 029455 1 MMGSGKTTVGKILSGVLGYSF 21 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~ 21 (193)
||||||||+++.|++.+++.+
T Consensus 118 P~GsGKTTl~~~la~~l~~~~ 138 (637)
T TIGR00602 118 PSGCGKSTTIKILSKELGIQV 138 (637)
T ss_pred CCCCCHHHHHHHHHHHhhhHH
Confidence 799999999999999998654
No 495
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=91.89 E-value=0.1 Score=41.30 Aligned_cols=17 Identities=29% Similarity=0.344 Sum_probs=14.5
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
++||||||+.+.|+-.+
T Consensus 35 ~nGsGKSTLl~~l~G~~ 51 (247)
T TIGR00972 35 PSGCGKSTLLRSLNRMN 51 (247)
T ss_pred CCCCCHHHHHHHHhccC
Confidence 58999999999998543
No 496
>PRK05642 DNA replication initiation factor; Validated
Probab=91.89 E-value=0.15 Score=40.30 Aligned_cols=29 Identities=10% Similarity=0.102 Sum_probs=22.1
Q ss_pred CCCCchHHHHHHHHHh-----cCCcEeechHHHH
Q 029455 1 MMGSGKTTVGKILSGV-----LGYSFFDCDTLIE 29 (193)
Q Consensus 1 ~~GsGKSTia~~La~~-----lg~~~~d~d~~~~ 29 (193)
++|||||++++.++.+ ..+.|++.+++..
T Consensus 53 ~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~ 86 (234)
T PRK05642 53 KDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLD 86 (234)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHh
Confidence 5899999999998753 2456788877653
No 497
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=91.88 E-value=0.1 Score=40.41 Aligned_cols=16 Identities=44% Similarity=0.709 Sum_probs=14.1
Q ss_pred CCCCchHHHHHHHHHh
Q 029455 1 MMGSGKTTVGKILSGV 16 (193)
Q Consensus 1 ~~GsGKSTia~~La~~ 16 (193)
++||||||+.+.|+..
T Consensus 45 ~nGsGKSTLl~~i~G~ 60 (214)
T PRK13543 45 DNGAGKTTLLRVLAGL 60 (214)
T ss_pred CCCCCHHHHHHHHhCC
Confidence 5899999999999854
No 498
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=91.87 E-value=0.15 Score=44.23 Aligned_cols=31 Identities=13% Similarity=0.281 Sum_probs=23.5
Q ss_pred CCCCchHHHHHHHHHhc-------CCcEeechHHHHHH
Q 029455 1 MMGSGKTTVGKILSGVL-------GYSFFDCDTLIEQS 31 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l-------g~~~~d~d~~~~~~ 31 (193)
+||+|||++++.++..+ .+.+++++++....
T Consensus 138 ~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~ 175 (440)
T PRK14088 138 GVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDL 175 (440)
T ss_pred CCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHH
Confidence 68999999999998864 24566777765543
No 499
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=91.87 E-value=0.092 Score=42.11 Aligned_cols=17 Identities=41% Similarity=0.432 Sum_probs=14.6
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
++||||||+.+.|+-.+
T Consensus 45 ~nGsGKSTLl~~l~Gl~ 61 (265)
T PRK10575 45 HNGSGKSTLLKMLGRHQ 61 (265)
T ss_pred CCCCCHHHHHHHHcCCC
Confidence 58999999999998643
No 500
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=91.87 E-value=0.1 Score=41.33 Aligned_cols=17 Identities=29% Similarity=0.325 Sum_probs=14.5
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
++||||||+.+.|+-.+
T Consensus 38 ~nGsGKSTLl~~l~Gl~ 54 (251)
T PRK14251 38 PSGCGKSTFLRCLNRMN 54 (251)
T ss_pred CCCCCHHHHHHHHhhcc
Confidence 58999999999998543
Done!