Query 029455
Match_columns 193
No_of_seqs 149 out of 1686
Neff 8.8
Searched_HMMs 29240
Date Mon Mar 25 21:45:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029455.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029455hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nwj_A ATSK2; P loop, shikimat 100.0 3.2E-29 1.1E-33 198.8 18.6 189 1-189 56-245 (250)
2 3vaa_A Shikimate kinase, SK; s 99.9 1.1E-25 3.8E-30 172.3 17.7 164 1-183 33-198 (199)
3 3trf_A Shikimate kinase, SK; a 99.9 1.7E-25 5.9E-30 168.8 17.9 163 1-183 13-177 (185)
4 2iyv_A Shikimate kinase, SK; t 99.9 7E-24 2.4E-28 159.9 17.0 159 1-181 10-169 (184)
5 1zuh_A Shikimate kinase; alpha 99.9 1.6E-23 5.5E-28 155.9 15.8 150 1-178 15-167 (168)
6 1via_A Shikimate kinase; struc 99.9 3.4E-23 1.2E-27 155.1 16.4 152 1-179 12-165 (175)
7 1e6c_A Shikimate kinase; phosp 99.9 3.3E-22 1.1E-26 148.9 17.3 157 1-179 10-169 (173)
8 1kag_A SKI, shikimate kinase I 99.9 6.9E-22 2.4E-26 147.3 14.3 158 1-179 12-171 (173)
9 2pt5_A Shikimate kinase, SK; a 99.9 1.6E-21 5.6E-26 144.6 14.9 155 1-180 8-163 (168)
10 3fdi_A Uncharacterized protein 99.8 2.5E-20 8.7E-25 143.1 12.6 162 1-181 14-199 (201)
11 3hdt_A Putative kinase; struct 99.8 8.7E-19 3E-23 136.5 11.2 162 1-180 22-218 (223)
12 2c95_A Adenylate kinase 1; tra 99.7 4.7E-16 1.6E-20 117.6 14.8 162 1-182 17-195 (196)
13 3lw7_A Adenylate kinase relate 99.7 6E-16 2.1E-20 114.4 14.7 150 1-182 9-178 (179)
14 1qf9_A UMP/CMP kinase, protein 99.7 7.4E-16 2.5E-20 115.9 14.5 159 1-180 14-191 (194)
15 3be4_A Adenylate kinase; malar 99.7 1.3E-15 4.3E-20 117.7 14.5 161 1-177 13-216 (217)
16 3kb2_A SPBC2 prophage-derived 99.7 2.2E-15 7.5E-20 111.4 14.5 145 1-185 9-171 (173)
17 2bwj_A Adenylate kinase 5; pho 99.7 3.7E-15 1.3E-19 112.9 15.2 162 1-182 20-198 (199)
18 1knq_A Gluconate kinase; ALFA/ 99.6 3E-15 1E-19 111.5 13.6 144 1-179 16-172 (175)
19 3cm0_A Adenylate kinase; ATP-b 99.6 3E-15 1E-19 112.4 13.1 155 1-178 12-184 (186)
20 4eun_A Thermoresistant glucoki 99.6 2.8E-15 9.5E-20 114.4 13.0 148 1-181 37-194 (200)
21 1tev_A UMP-CMP kinase; ploop, 99.6 4.6E-15 1.6E-19 111.7 14.0 158 1-180 11-194 (196)
22 1aky_A Adenylate kinase; ATP:A 99.6 5.2E-15 1.8E-19 114.3 14.4 164 1-180 12-219 (220)
23 1zak_A Adenylate kinase; ATP:A 99.6 5.4E-15 1.9E-19 114.4 14.0 169 1-186 13-216 (222)
24 3iij_A Coilin-interacting nucl 99.6 4.9E-16 1.7E-20 116.4 7.5 149 1-182 19-175 (180)
25 3umf_A Adenylate kinase; rossm 99.6 1.7E-14 5.7E-19 111.8 15.7 163 1-181 37-214 (217)
26 1jjv_A Dephospho-COA kinase; P 99.6 6.8E-15 2.3E-19 112.4 13.3 149 1-183 10-199 (206)
27 1y63_A LMAJ004144AAA protein; 99.6 1.5E-16 5.2E-21 119.9 4.0 149 1-182 18-179 (184)
28 1ukz_A Uridylate kinase; trans 99.6 2.8E-14 9.5E-19 108.6 15.9 160 1-181 23-202 (203)
29 1zd8_A GTP:AMP phosphotransfer 99.6 1.3E-15 4.3E-20 118.4 8.4 105 1-106 15-128 (227)
30 4i1u_A Dephospho-COA kinase; s 99.6 2.2E-14 7.7E-19 110.3 14.7 154 1-183 17-204 (210)
31 1ak2_A Adenylate kinase isoenz 99.6 4.3E-14 1.5E-18 110.2 16.1 165 1-181 24-231 (233)
32 3t61_A Gluconokinase; PSI-biol 99.6 9.6E-15 3.3E-19 111.3 11.6 143 1-181 26-180 (202)
33 2cdn_A Adenylate kinase; phosp 99.6 3.5E-14 1.2E-18 108.1 13.8 155 1-179 28-200 (201)
34 1qhx_A CPT, protein (chloramph 99.6 1.3E-15 4.6E-20 113.5 5.0 146 1-178 11-176 (178)
35 3sr0_A Adenylate kinase; phosp 99.6 2.1E-14 7.1E-19 110.4 11.7 103 1-106 8-124 (206)
36 1kht_A Adenylate kinase; phosp 99.6 5.1E-14 1.7E-18 105.7 13.3 159 1-178 11-191 (192)
37 2vli_A Antibiotic resistance p 99.6 7.1E-15 2.4E-19 109.9 7.7 146 1-183 13-174 (183)
38 2grj_A Dephospho-COA kinase; T 99.5 4.2E-14 1.4E-18 107.6 10.2 138 1-181 20-187 (192)
39 4e22_A Cytidylate kinase; P-lo 99.5 3.2E-14 1.1E-18 112.4 9.9 30 1-30 35-64 (252)
40 3fb4_A Adenylate kinase; psych 99.5 3.3E-13 1.1E-17 103.6 15.3 103 1-106 8-127 (216)
41 3ake_A Cytidylate kinase; CMP 99.5 3.8E-13 1.3E-17 102.3 15.4 145 1-179 10-207 (208)
42 2h92_A Cytidylate kinase; ross 99.5 4.5E-15 1.5E-19 114.4 4.4 30 1-30 11-40 (219)
43 2xb4_A Adenylate kinase; ATP-b 99.5 1.4E-13 4.7E-18 106.8 12.2 103 1-106 8-126 (223)
44 3dl0_A Adenylate kinase; phosp 99.5 3.7E-13 1.3E-17 103.4 14.2 103 1-106 8-127 (216)
45 1vht_A Dephospho-COA kinase; s 99.5 1.1E-13 3.8E-18 106.5 10.6 149 1-183 12-197 (218)
46 1e4v_A Adenylate kinase; trans 99.5 8.8E-13 3E-17 101.4 14.9 103 1-106 8-123 (214)
47 1uj2_A Uridine-cytidine kinase 99.5 1.8E-14 6.1E-19 113.7 5.5 164 1-186 30-239 (252)
48 3tlx_A Adenylate kinase 2; str 99.5 4.6E-13 1.6E-17 105.2 13.4 103 1-106 37-156 (243)
49 2if2_A Dephospho-COA kinase; a 99.5 7.3E-14 2.5E-18 106.4 8.3 148 1-182 9-193 (204)
50 2pbr_A DTMP kinase, thymidylat 99.5 4.7E-13 1.6E-17 100.6 12.7 155 1-183 8-194 (195)
51 1q3t_A Cytidylate kinase; nucl 99.5 3.2E-14 1.1E-18 111.2 6.0 30 1-30 24-53 (236)
52 2rhm_A Putative kinase; P-loop 99.5 1.1E-13 3.8E-18 104.1 8.5 102 1-106 13-125 (193)
53 3r20_A Cytidylate kinase; stru 99.5 8.5E-13 2.9E-17 103.1 13.6 160 1-182 17-229 (233)
54 3gmt_A Adenylate kinase; ssgci 99.5 3.9E-13 1.3E-17 104.7 11.4 102 1-106 16-131 (230)
55 3a4m_A L-seryl-tRNA(SEC) kinas 99.5 1.3E-13 4.5E-18 109.4 8.3 148 1-180 12-173 (260)
56 1nks_A Adenylate kinase; therm 99.5 4.3E-12 1.5E-16 95.1 16.0 159 1-178 9-193 (194)
57 1uf9_A TT1252 protein; P-loop, 99.5 1.4E-13 4.8E-18 104.4 7.6 150 1-183 16-196 (203)
58 2f6r_A COA synthase, bifunctio 99.4 3.8E-12 1.3E-16 102.1 13.9 151 1-182 83-270 (281)
59 2jaq_A Deoxyguanosine kinase; 99.4 2E-12 6.7E-17 97.9 11.7 75 87-182 126-202 (205)
60 1cke_A CK, MSSA, protein (cyti 99.4 5.8E-12 2E-16 97.1 12.7 30 1-30 13-42 (227)
61 3cr8_A Sulfate adenylyltranfer 99.4 6E-13 2E-17 115.9 6.8 151 1-181 377-540 (552)
62 1ly1_A Polynucleotide kinase; 99.4 2.9E-12 9.8E-17 95.2 9.2 103 1-106 10-126 (181)
63 2z0h_A DTMP kinase, thymidylat 99.3 4.7E-11 1.6E-15 89.9 14.2 73 86-183 122-194 (197)
64 3uie_A Adenylyl-sulfate kinase 99.3 2.2E-11 7.6E-16 92.6 10.6 95 1-103 33-140 (200)
65 1m7g_A Adenylylsulfate kinase; 99.3 5.9E-13 2E-17 102.2 1.5 150 1-180 33-202 (211)
66 2yvu_A Probable adenylyl-sulfa 99.3 1.8E-12 6.1E-17 97.4 3.7 148 1-182 21-185 (186)
67 1x6v_B Bifunctional 3'-phospho 99.3 2.1E-12 7.2E-17 113.6 4.3 149 1-181 60-223 (630)
68 2qt1_A Nicotinamide riboside k 99.2 5.3E-11 1.8E-15 90.7 10.6 157 1-181 29-206 (207)
69 2plr_A DTMP kinase, probable t 99.2 2.1E-09 7.3E-14 81.5 18.0 83 87-183 123-210 (213)
70 2pez_A Bifunctional 3'-phospho 99.2 1.3E-11 4.5E-16 92.0 4.7 147 1-180 13-175 (179)
71 4eaq_A DTMP kinase, thymidylat 99.2 3.6E-10 1.2E-14 88.0 12.8 80 86-184 149-228 (229)
72 1m8p_A Sulfate adenylyltransfe 99.2 1E-11 3.5E-16 108.7 3.4 148 1-180 404-566 (573)
73 2qor_A Guanylate kinase; phosp 99.2 1.1E-10 3.7E-15 89.0 8.6 69 87-184 127-200 (204)
74 4hlc_A DTMP kinase, thymidylat 99.1 5.2E-09 1.8E-13 80.1 16.9 78 86-183 125-203 (205)
75 1nn5_A Similar to deoxythymidy 99.1 5.9E-10 2E-14 84.9 9.8 74 87-184 131-204 (215)
76 3a8t_A Adenylate isopentenyltr 99.1 4.1E-11 1.4E-15 98.1 3.3 105 1-106 48-194 (339)
77 2v54_A DTMP kinase, thymidylat 99.1 2.2E-10 7.7E-15 86.7 7.0 156 1-183 12-193 (204)
78 4edh_A DTMP kinase, thymidylat 99.1 9.7E-09 3.3E-13 79.1 16.1 79 86-184 132-210 (213)
79 2bbw_A Adenylate kinase 4, AK4 99.1 3.7E-09 1.3E-13 82.7 13.9 102 1-106 35-148 (246)
80 2wwf_A Thymidilate kinase, put 99.1 3.6E-10 1.2E-14 86.0 7.8 70 86-181 131-200 (212)
81 2bdt_A BH3686; alpha-beta prot 99.1 5.6E-10 1.9E-14 83.7 8.7 145 1-175 10-168 (189)
82 2gks_A Bifunctional SAT/APS ki 99.0 7.2E-11 2.5E-15 102.8 3.3 148 1-180 380-540 (546)
83 1p5z_B DCK, deoxycytidine kina 99.0 5.8E-09 2E-13 82.4 12.1 80 86-182 175-260 (263)
84 3lv8_A DTMP kinase, thymidylat 99.0 3.1E-08 1.1E-12 77.4 15.7 78 86-184 155-232 (236)
85 4tmk_A Protein (thymidylate ki 99.0 1.2E-07 4.1E-12 72.9 18.4 79 86-185 133-211 (213)
86 1ltq_A Polynucleotide kinase; 98.9 1.4E-09 4.6E-14 87.4 6.9 102 1-106 10-126 (301)
87 3v9p_A DTMP kinase, thymidylat 98.9 1.8E-08 6.3E-13 78.2 13.0 75 86-180 152-226 (227)
88 2axn_A 6-phosphofructo-2-kinas 98.9 2.7E-09 9.3E-14 92.4 8.4 133 1-143 43-196 (520)
89 1zp6_A Hypothetical protein AT 98.9 2.2E-09 7.5E-14 80.4 6.9 150 1-181 17-176 (191)
90 3hjn_A DTMP kinase, thymidylat 98.9 7.6E-08 2.6E-12 73.1 15.1 73 86-183 122-194 (197)
91 2p5t_B PEZT; postsegregational 98.9 6.1E-09 2.1E-13 82.0 8.3 101 1-106 40-157 (253)
92 2ze6_A Isopentenyl transferase 98.8 1.2E-09 4.2E-14 86.1 2.9 105 1-106 9-138 (253)
93 1gvn_B Zeta; postsegregational 98.8 9.3E-08 3.2E-12 76.7 13.6 103 1-106 41-162 (287)
94 3zvl_A Bifunctional polynucleo 98.8 8.9E-09 3E-13 86.8 6.8 84 1-106 266-357 (416)
95 3ld9_A DTMP kinase, thymidylat 98.8 5.7E-08 2E-12 75.2 10.1 74 85-183 145-218 (223)
96 3tmk_A Thymidylate kinase; pho 98.7 1.5E-07 5E-12 72.6 10.6 77 86-184 126-206 (216)
97 1bif_A 6-phosphofructo-2-kinas 98.6 1.8E-08 6E-13 86.2 4.6 131 1-143 47-200 (469)
98 3asz_A Uridine kinase; cytidin 98.6 1E-07 3.5E-12 72.4 8.2 29 1-29 14-44 (211)
99 2ocp_A DGK, deoxyguanosine kin 98.6 4.2E-07 1.4E-11 70.7 11.6 21 86-106 150-170 (241)
100 2vp4_A Deoxynucleoside kinase; 98.6 4.3E-07 1.5E-11 70.2 10.4 78 86-183 147-227 (230)
101 3tr0_A Guanylate kinase, GMP k 98.5 4.2E-07 1.4E-11 68.5 9.1 68 87-181 119-187 (205)
102 1a7j_A Phosphoribulokinase; tr 98.5 3.9E-07 1.3E-11 73.2 9.2 29 1-29 13-46 (290)
103 3d3q_A TRNA delta(2)-isopenten 98.5 7.2E-08 2.5E-12 79.0 4.4 100 1-104 15-136 (340)
104 2jeo_A Uridine-cytidine kinase 98.4 4.3E-06 1.5E-10 65.1 12.9 27 1-27 33-69 (245)
105 3crm_A TRNA delta(2)-isopenten 98.3 1.1E-07 3.7E-12 77.5 1.3 70 1-72 13-102 (323)
106 3tau_A Guanylate kinase, GMP k 98.3 3.4E-07 1.2E-11 69.7 4.0 68 87-181 121-189 (208)
107 1g8f_A Sulfate adenylyltransfe 98.3 1.8E-06 6.2E-11 74.4 7.7 26 1-26 403-435 (511)
108 1rz3_A Hypothetical protein rb 98.2 2E-06 7E-11 65.0 6.7 20 87-106 145-164 (201)
109 2j41_A Guanylate kinase; GMP, 98.2 7.6E-07 2.6E-11 67.0 3.0 17 1-17 14-30 (207)
110 1gtv_A TMK, thymidylate kinase 98.1 2E-07 6.8E-12 70.8 -1.8 20 87-106 134-153 (214)
111 3c8u_A Fructokinase; YP_612366 98.1 8.7E-06 3E-10 61.7 7.0 27 1-27 30-61 (208)
112 2ga8_A Hypothetical 39.9 kDa p 98.0 1.1E-07 3.9E-12 78.2 -4.7 52 1-54 32-103 (359)
113 3tqc_A Pantothenate kinase; bi 98.0 3.1E-05 1E-09 63.0 8.6 28 1-28 100-134 (321)
114 3a00_A Guanylate kinase, GMP k 97.9 4.6E-06 1.6E-10 62.2 2.1 20 87-106 115-135 (186)
115 1ex7_A Guanylate kinase; subst 97.7 3.7E-05 1.3E-09 57.7 5.1 18 1-18 9-26 (186)
116 3lnc_A Guanylate kinase, GMP k 97.7 3.3E-05 1.1E-09 59.4 4.7 67 88-181 142-209 (231)
117 3exa_A TRNA delta(2)-isopenten 97.6 5.1E-05 1.7E-09 61.5 4.2 27 1-27 11-37 (322)
118 3ch4_B Pmkase, phosphomevalona 97.5 0.00049 1.7E-08 52.2 8.2 100 1-103 19-144 (202)
119 3eph_A TRNA isopentenyltransfe 97.2 0.00014 4.8E-09 60.8 2.2 26 1-26 10-35 (409)
120 3foz_A TRNA delta(2)-isopenten 97.0 0.00025 8.4E-09 57.3 2.5 27 1-27 18-44 (316)
121 3t15_A Ribulose bisphosphate c 97.0 0.00025 8.6E-09 56.6 2.5 25 1-25 44-68 (293)
122 4b4t_K 26S protease regulatory 96.9 0.00038 1.3E-08 58.7 2.8 25 1-25 214-238 (428)
123 1dek_A Deoxynucleoside monopho 96.9 0.0006 2E-08 53.1 3.5 30 1-30 9-38 (241)
124 4b4t_M 26S protease regulatory 96.9 0.00043 1.5E-08 58.5 2.9 25 1-25 223-247 (434)
125 1lv7_A FTSH; alpha/beta domain 96.9 0.0005 1.7E-08 53.4 3.0 24 1-24 53-76 (257)
126 4b4t_J 26S protease regulatory 96.9 0.00045 1.6E-08 57.7 2.8 25 1-25 190-214 (405)
127 4b4t_L 26S protease subunit RP 96.9 0.00046 1.6E-08 58.3 2.9 25 1-25 223-247 (437)
128 1g41_A Heat shock protein HSLU 96.8 0.00061 2.1E-08 57.7 3.1 25 1-25 58-82 (444)
129 3hws_A ATP-dependent CLP prote 96.8 0.00063 2.2E-08 55.7 3.1 25 1-25 59-83 (363)
130 2qz4_A Paraplegin; AAA+, SPG7, 96.7 0.00073 2.5E-08 52.3 2.9 23 1-23 47-69 (262)
131 4b4t_H 26S protease regulatory 96.7 0.00078 2.7E-08 57.2 2.9 25 1-25 251-275 (467)
132 3b9p_A CG5977-PA, isoform A; A 96.7 0.00088 3E-08 53.0 2.9 23 1-23 62-84 (297)
133 1sq5_A Pantothenate kinase; P- 96.7 0.00083 2.8E-08 54.0 2.8 27 1-27 88-121 (308)
134 4b4t_I 26S protease regulatory 96.7 0.00082 2.8E-08 56.6 2.8 25 1-25 224-248 (437)
135 3cf0_A Transitional endoplasmi 96.6 0.00094 3.2E-08 53.4 3.0 32 1-32 57-90 (301)
136 3h4m_A Proteasome-activating n 96.6 0.00098 3.3E-08 52.4 2.9 23 1-23 59-81 (285)
137 2r62_A Cell division protease 96.6 0.00077 2.6E-08 52.6 2.3 24 1-24 52-75 (268)
138 2x8a_A Nuclear valosin-contain 96.6 0.001 3.6E-08 52.6 3.0 23 1-23 52-74 (274)
139 1um8_A ATP-dependent CLP prote 96.6 0.0011 3.7E-08 54.5 3.1 25 1-25 80-104 (376)
140 1osn_A Thymidine kinase, VZV-T 96.6 0.012 4E-07 48.1 8.9 42 87-137 168-209 (341)
141 1d2n_A N-ethylmaleimide-sensit 96.5 0.0012 4.1E-08 51.7 2.9 24 1-24 72-95 (272)
142 3ec2_A DNA replication protein 96.5 0.0022 7.4E-08 47.0 3.8 30 1-30 46-81 (180)
143 3eie_A Vacuolar protein sortin 96.5 0.0013 4.5E-08 53.0 2.8 25 1-25 59-83 (322)
144 1ofh_A ATP-dependent HSL prote 96.4 0.0016 5.3E-08 51.6 2.9 23 1-23 58-80 (310)
145 1ixz_A ATP-dependent metallopr 96.4 0.0017 5.9E-08 50.2 3.1 25 1-25 57-81 (254)
146 1kgd_A CASK, peripheral plasma 96.3 0.0017 5.7E-08 47.8 2.5 18 1-18 13-30 (180)
147 2qmh_A HPR kinase/phosphorylas 96.3 0.0018 6.3E-08 49.0 2.7 26 1-27 42-67 (205)
148 2qp9_X Vacuolar protein sortin 96.3 0.0018 6.1E-08 53.1 2.8 25 1-25 92-116 (355)
149 1in4_A RUVB, holliday junction 96.3 0.002 7E-08 52.2 2.9 22 1-22 59-80 (334)
150 2c9o_A RUVB-like 1; hexameric 96.2 0.0021 7.2E-08 54.4 2.9 25 1-25 71-97 (456)
151 1xwi_A SKD1 protein; VPS4B, AA 96.2 0.0023 7.9E-08 51.7 2.9 23 1-23 53-76 (322)
152 3d8b_A Fidgetin-like protein 1 96.2 0.0025 8.5E-08 52.2 3.0 23 1-23 125-147 (357)
153 1jbk_A CLPB protein; beta barr 96.2 0.0028 9.7E-08 45.9 2.9 17 1-17 51-67 (195)
154 1iy2_A ATP-dependent metallopr 96.2 0.0028 9.5E-08 49.8 3.1 25 1-25 81-105 (278)
155 2p65_A Hypothetical protein PF 96.2 0.0021 7.1E-08 46.6 2.1 17 1-17 51-67 (187)
156 3pfi_A Holliday junction ATP-d 96.1 0.0029 9.8E-08 51.0 3.0 25 1-25 63-87 (338)
157 3cf2_A TER ATPase, transitiona 96.1 0.0025 8.7E-08 57.7 2.7 25 1-25 246-270 (806)
158 2ce7_A Cell division protein F 96.0 0.0031 1E-07 53.9 2.9 24 1-24 57-80 (476)
159 4gp7_A Metallophosphoesterase; 96.0 0.0024 8.3E-08 46.6 2.0 28 1-30 17-44 (171)
160 1ye8_A Protein THEP1, hypothet 96.0 0.0028 9.5E-08 46.8 2.4 21 1-21 8-28 (178)
161 1sxj_A Activator 1 95 kDa subu 96.0 0.0032 1.1E-07 54.1 3.0 24 1-24 85-108 (516)
162 3vfd_A Spastin; ATPase, microt 96.0 0.0034 1.2E-07 51.8 3.0 23 1-23 156-178 (389)
163 1odf_A YGR205W, hypothetical 3 95.9 0.0034 1.2E-07 50.1 2.6 28 1-28 39-74 (290)
164 3u61_B DNA polymerase accessor 95.8 0.0038 1.3E-07 50.0 2.5 25 1-25 56-80 (324)
165 3n70_A Transport activator; si 95.8 0.004 1.4E-07 44.1 2.2 17 1-17 32-48 (145)
166 2kjq_A DNAA-related protein; s 95.8 0.0031 1.1E-07 45.1 1.6 26 1-26 44-74 (149)
167 3syl_A Protein CBBX; photosynt 95.7 0.0045 1.6E-07 49.0 2.5 17 1-17 75-91 (309)
168 1l8q_A Chromosomal replication 95.7 0.0052 1.8E-07 49.2 2.8 28 1-28 45-77 (324)
169 3pvs_A Replication-associated 95.7 0.0054 1.8E-07 51.9 3.0 25 1-25 58-82 (447)
170 2zan_A Vacuolar protein sortin 95.7 0.0054 1.8E-07 51.8 3.0 28 1-28 175-205 (444)
171 2w58_A DNAI, primosome compone 95.7 0.0072 2.5E-07 44.9 3.3 30 1-30 62-96 (202)
172 1hqc_A RUVB; extended AAA-ATPa 95.6 0.0056 1.9E-07 48.8 2.6 22 1-22 46-67 (324)
173 2r44_A Uncharacterized protein 95.6 0.0048 1.7E-07 49.6 2.2 22 1-22 54-75 (331)
174 2dhr_A FTSH; AAA+ protein, hex 95.5 0.0068 2.3E-07 52.1 3.0 24 1-24 72-95 (499)
175 1lvg_A Guanylate kinase, GMP k 95.5 0.0061 2.1E-07 45.5 2.2 17 1-17 12-28 (198)
176 3hu3_A Transitional endoplasmi 95.4 0.0076 2.6E-07 51.6 2.9 24 1-24 246-269 (489)
177 3ney_A 55 kDa erythrocyte memb 95.4 0.0076 2.6E-07 45.4 2.5 18 1-18 27-44 (197)
178 1c9k_A COBU, adenosylcobinamid 95.4 0.0075 2.6E-07 44.8 2.4 21 1-22 7-27 (180)
179 3cf2_A TER ATPase, transitiona 95.3 0.0089 3E-07 54.2 3.2 25 1-25 519-543 (806)
180 1svm_A Large T antigen; AAA+ f 95.3 0.0089 3.1E-07 49.5 2.9 23 1-23 177-199 (377)
181 3bos_A Putative DNA replicatio 95.3 0.0072 2.5E-07 45.6 2.2 28 1-28 60-92 (242)
182 1znw_A Guanylate kinase, GMP k 95.3 0.0079 2.7E-07 45.1 2.3 18 1-18 28-45 (207)
183 2v1u_A Cell division control p 95.3 0.0078 2.7E-07 48.8 2.4 17 1-17 52-68 (387)
184 3uk6_A RUVB-like 2; hexameric 95.2 0.01 3.5E-07 48.2 2.9 19 1-19 78-96 (368)
185 2qby_B CDC6 homolog 3, cell di 95.2 0.01 3.5E-07 48.3 2.9 25 1-25 53-88 (384)
186 3m6a_A ATP-dependent protease 95.2 0.0097 3.3E-07 51.6 2.8 23 1-23 116-138 (543)
187 1z6g_A Guanylate kinase; struc 95.2 0.0089 3E-07 45.4 2.3 17 1-17 31-47 (218)
188 3co5_A Putative two-component 95.2 0.0035 1.2E-07 44.4 -0.0 21 1-22 35-55 (143)
189 3aez_A Pantothenate kinase; tr 95.1 0.0086 2.9E-07 48.3 2.2 20 87-106 219-238 (312)
190 4fcw_A Chaperone protein CLPB; 95.1 0.0088 3E-07 47.3 2.3 17 1-17 55-71 (311)
191 1ypw_A Transitional endoplasmi 95.1 0.011 3.7E-07 53.7 3.0 25 1-25 246-270 (806)
192 3pxg_A Negative regulator of g 95.0 0.011 3.9E-07 50.1 2.9 26 1-26 209-244 (468)
193 2qby_A CDC6 homolog 1, cell di 95.0 0.012 4.1E-07 47.6 2.9 24 1-24 53-82 (386)
194 1s96_A Guanylate kinase, GMP k 95.0 0.012 4E-07 44.9 2.5 18 1-18 24-41 (219)
195 3tqf_A HPR(Ser) kinase; transf 95.0 0.016 5.5E-07 42.8 3.1 26 1-27 24-49 (181)
196 1tue_A Replication protein E1; 94.9 0.0093 3.2E-07 45.3 1.8 23 1-23 66-88 (212)
197 1xjc_A MOBB protein homolog; s 94.8 0.012 4.2E-07 43.1 2.2 17 1-17 12-28 (169)
198 4a74_A DNA repair and recombin 94.8 0.012 4E-07 44.3 2.1 16 1-16 33-48 (231)
199 1ypw_A Transitional endoplasmi 94.8 0.012 4E-07 53.5 2.3 23 1-23 519-541 (806)
200 2chg_A Replication factor C sm 94.7 0.013 4.5E-07 43.3 2.2 17 1-17 46-62 (226)
201 1njg_A DNA polymerase III subu 94.7 0.013 4.5E-07 43.8 2.2 19 1-19 53-71 (250)
202 1fnn_A CDC6P, cell division co 94.7 0.017 5.8E-07 46.9 2.9 23 1-23 52-78 (389)
203 2ehv_A Hypothetical protein PH 94.7 0.013 4.6E-07 44.6 2.1 14 1-14 38-51 (251)
204 1htw_A HI0065; nucleotide-bind 94.6 0.017 5.7E-07 41.8 2.3 17 1-17 41-57 (158)
205 2bjv_A PSP operon transcriptio 94.5 0.02 7E-07 44.3 3.0 18 1-18 37-54 (265)
206 2z4s_A Chromosomal replication 94.4 0.02 6.7E-07 48.3 2.7 28 1-28 138-172 (440)
207 3pxi_A Negative regulator of g 94.4 0.019 6.7E-07 51.5 2.9 26 1-26 209-244 (758)
208 1sxj_C Activator 1 40 kDa subu 94.3 0.017 5.8E-07 46.6 2.1 18 1-18 54-71 (340)
209 2qen_A Walker-type ATPase; unk 94.3 0.022 7.4E-07 45.5 2.6 26 1-26 39-64 (350)
210 2i3b_A HCR-ntpase, human cance 94.2 0.02 7E-07 42.6 2.2 17 1-17 9-25 (189)
211 2w0m_A SSO2452; RECA, SSPF, un 94.2 0.02 6.8E-07 42.9 2.2 16 1-16 31-46 (235)
212 2f1r_A Molybdopterin-guanine d 94.2 0.011 3.6E-07 43.5 0.5 17 1-17 10-26 (171)
213 1lw7_A Transcriptional regulat 94.2 0.019 6.6E-07 46.9 2.2 20 1-20 178-197 (365)
214 1np6_A Molybdopterin-guanine d 94.1 0.022 7.5E-07 41.9 2.2 17 1-17 14-30 (174)
215 2cvh_A DNA repair and recombin 94.1 0.021 7.1E-07 42.6 2.1 26 1-26 28-55 (220)
216 3tif_A Uncharacterized ABC tra 94.1 0.017 5.8E-07 44.5 1.5 16 1-16 39-54 (235)
217 2qgz_A Helicase loader, putati 94.0 0.026 8.7E-07 45.3 2.6 32 1-32 160-197 (308)
218 1r6b_X CLPA protein; AAA+, N-t 94.0 0.025 8.6E-07 50.7 2.8 27 1-27 496-524 (758)
219 2pcj_A ABC transporter, lipopr 94.0 0.018 6.1E-07 44.0 1.6 16 1-16 38-53 (224)
220 1sxj_D Activator 1 41 kDa subu 94.0 0.017 6E-07 46.3 1.6 18 1-18 66-83 (353)
221 2onk_A Molybdate/tungstate ABC 94.0 0.022 7.6E-07 44.0 2.1 17 1-17 32-48 (240)
222 1g8p_A Magnesium-chelatase 38 94.0 0.016 5.5E-07 46.5 1.3 18 1-18 53-70 (350)
223 3b85_A Phosphate starvation-in 93.9 0.021 7.1E-07 43.2 1.7 15 1-15 30-44 (208)
224 3te6_A Regulatory protein SIR3 93.9 0.018 6.3E-07 46.5 1.4 17 1-17 53-69 (318)
225 1p6x_A Thymidine kinase; P-loo 93.9 0.022 7.5E-07 46.4 1.9 43 87-138 159-201 (334)
226 3czp_A Putative polyphosphate 93.8 0.25 8.5E-06 42.4 8.3 20 88-107 150-169 (500)
227 1jr3_A DNA polymerase III subu 93.7 0.029 1E-06 45.3 2.5 19 1-19 46-64 (373)
228 2v9p_A Replication protein E1; 93.7 0.027 9.2E-07 45.2 2.1 17 1-17 134-150 (305)
229 1n0w_A DNA repair protein RAD5 93.7 0.028 9.6E-07 42.6 2.1 15 1-15 32-46 (243)
230 4g1u_C Hemin import ATP-bindin 93.6 0.023 7.9E-07 44.6 1.6 17 1-17 45-61 (266)
231 2eyu_A Twitching motility prot 93.6 0.03 1E-06 43.9 2.1 17 1-17 33-49 (261)
232 1sxj_E Activator 1 40 kDa subu 93.6 0.024 8.2E-07 45.7 1.6 17 1-17 44-60 (354)
233 3gfo_A Cobalt import ATP-bindi 93.5 0.024 8.3E-07 44.8 1.6 17 1-17 42-58 (275)
234 2cbz_A Multidrug resistance-as 93.5 0.024 8.3E-07 43.6 1.5 16 1-16 39-54 (237)
235 2d2e_A SUFC protein; ABC-ATPas 93.5 0.031 1E-06 43.4 2.1 15 1-15 37-51 (250)
236 1b0u_A Histidine permease; ABC 93.4 0.026 8.9E-07 44.2 1.6 17 1-17 40-56 (262)
237 3fvq_A Fe(3+) IONS import ATP- 93.4 0.032 1.1E-06 45.9 2.1 17 1-17 38-54 (359)
238 1sgw_A Putative ABC transporte 93.4 0.028 9.5E-07 42.7 1.6 17 1-17 43-59 (214)
239 1ji0_A ABC transporter; ATP bi 93.4 0.027 9.2E-07 43.5 1.5 17 1-17 40-56 (240)
240 1g6h_A High-affinity branched- 93.3 0.027 9.3E-07 43.9 1.5 17 1-17 41-57 (257)
241 1mv5_A LMRA, multidrug resista 93.3 0.028 9.6E-07 43.4 1.6 17 1-17 36-52 (243)
242 1qvr_A CLPB protein; coiled co 93.3 0.042 1.4E-06 50.1 2.9 17 1-17 199-215 (854)
243 1rj9_A FTSY, signal recognitio 93.3 0.035 1.2E-06 44.5 2.2 17 1-17 110-126 (304)
244 2ff7_A Alpha-hemolysin translo 93.3 0.028 9.7E-07 43.6 1.5 17 1-17 43-59 (247)
245 3czp_A Putative polyphosphate 93.2 1.7 5.8E-05 37.2 12.6 20 88-107 407-426 (500)
246 2olj_A Amino acid ABC transpor 93.2 0.03 1E-06 43.9 1.6 17 1-17 58-74 (263)
247 1iqp_A RFCS; clamp loader, ext 93.2 0.038 1.3E-06 43.7 2.2 18 1-18 54-71 (327)
248 2zu0_C Probable ATP-dependent 93.2 0.037 1.3E-06 43.4 2.1 16 1-16 54-69 (267)
249 3rlf_A Maltose/maltodextrin im 93.2 0.036 1.2E-06 45.9 2.1 17 1-17 37-53 (381)
250 1e2k_A Thymidine kinase; trans 93.1 0.027 9.4E-07 45.7 1.3 20 87-106 156-175 (331)
251 2pze_A Cystic fibrosis transme 93.1 0.032 1.1E-06 42.7 1.6 17 1-17 42-58 (229)
252 1z47_A CYSA, putative ABC-tran 93.1 0.038 1.3E-06 45.3 2.1 17 1-17 49-65 (355)
253 1vpl_A ABC transporter, ATP-bi 93.1 0.032 1.1E-06 43.5 1.6 17 1-17 49-65 (256)
254 1cr0_A DNA primase/helicase; R 93.0 0.039 1.3E-06 43.5 2.1 17 1-17 43-59 (296)
255 2yyz_A Sugar ABC transporter, 93.0 0.039 1.3E-06 45.3 2.1 17 1-17 37-53 (359)
256 2ixe_A Antigen peptide transpo 93.0 0.033 1.1E-06 43.8 1.5 17 1-17 53-69 (271)
257 2qi9_C Vitamin B12 import ATP- 93.0 0.034 1.2E-06 43.2 1.6 17 1-17 34-50 (249)
258 2it1_A 362AA long hypothetical 93.0 0.041 1.4E-06 45.3 2.1 17 1-17 37-53 (362)
259 2dr3_A UPF0273 protein PH0284; 92.9 0.045 1.5E-06 41.4 2.2 16 1-16 31-46 (247)
260 2ghi_A Transport protein; mult 92.9 0.034 1.2E-06 43.4 1.5 17 1-17 54-70 (260)
261 3b9q_A Chloroplast SRP recepto 92.9 0.044 1.5E-06 43.8 2.2 17 1-17 108-124 (302)
262 1v43_A Sugar-binding transport 92.9 0.042 1.4E-06 45.3 2.1 17 1-17 45-61 (372)
263 2orw_A Thymidine kinase; TMTK, 92.9 0.047 1.6E-06 40.3 2.2 17 1-17 11-27 (184)
264 1vma_A Cell division protein F 92.8 0.046 1.6E-06 43.9 2.2 26 1-26 112-142 (306)
265 2ihy_A ABC transporter, ATP-bi 92.8 0.036 1.2E-06 43.8 1.6 17 1-17 55-71 (279)
266 1g29_1 MALK, maltose transport 92.8 0.043 1.5E-06 45.3 2.1 17 1-17 37-53 (372)
267 2yz2_A Putative ABC transporte 92.8 0.036 1.2E-06 43.4 1.5 17 1-17 41-57 (266)
268 1w5s_A Origin recognition comp 92.8 0.049 1.7E-06 44.6 2.4 17 1-17 60-76 (412)
269 1nlf_A Regulatory protein REPA 92.8 0.045 1.5E-06 42.8 2.1 15 1-15 38-52 (279)
270 1of1_A Thymidine kinase; trans 92.7 0.041 1.4E-06 45.5 1.8 20 87-106 201-220 (376)
271 2chq_A Replication factor C sm 92.7 0.047 1.6E-06 43.0 2.1 17 1-17 46-62 (319)
272 3nbx_X ATPase RAVA; AAA+ ATPas 92.7 0.038 1.3E-06 47.4 1.6 18 1-18 49-66 (500)
273 2nq2_C Hypothetical ABC transp 92.7 0.039 1.3E-06 43.0 1.5 17 1-17 39-55 (253)
274 3e70_C DPA, signal recognition 92.6 0.051 1.7E-06 44.0 2.2 17 1-17 137-153 (328)
275 2pjz_A Hypothetical protein ST 92.6 0.042 1.4E-06 43.1 1.6 16 1-16 38-53 (263)
276 3d31_A Sulfate/molybdate ABC t 92.5 0.035 1.2E-06 45.4 1.2 17 1-17 34-50 (348)
277 3tui_C Methionine import ATP-b 92.4 0.053 1.8E-06 44.7 2.1 17 1-17 62-78 (366)
278 1sxj_B Activator 1 37 kDa subu 92.4 0.055 1.9E-06 42.7 2.2 17 1-17 50-66 (323)
279 3k1j_A LON protease, ATP-depen 92.4 0.058 2E-06 47.2 2.5 18 1-18 68-85 (604)
280 1a5t_A Delta prime, HOLB; zinc 92.3 0.067 2.3E-06 43.1 2.5 20 1-20 32-51 (334)
281 3gd7_A Fusion complex of cysti 92.2 0.056 1.9E-06 44.9 2.1 15 1-15 55-69 (390)
282 2gza_A Type IV secretion syste 92.2 0.059 2E-06 44.1 2.1 18 1-18 183-200 (361)
283 3kta_A Chromosome segregation 92.1 0.076 2.6E-06 38.5 2.5 18 1-18 34-51 (182)
284 2px0_A Flagellar biosynthesis 92.0 0.065 2.2E-06 42.7 2.2 26 1-26 113-144 (296)
285 3pxi_A Negative regulator of g 92.0 0.081 2.8E-06 47.5 2.9 28 1-28 529-561 (758)
286 1ko7_A HPR kinase/phosphatase; 92.0 0.099 3.4E-06 42.1 3.2 25 1-26 152-176 (314)
287 1pzn_A RAD51, DNA repair and r 91.9 0.064 2.2E-06 43.7 2.1 17 1-17 139-155 (349)
288 1r6b_X CLPA protein; AAA+, N-t 91.9 0.091 3.1E-06 47.1 3.1 17 1-17 215-231 (758)
289 2og2_A Putative signal recogni 91.9 0.071 2.4E-06 43.8 2.2 17 1-17 165-181 (359)
290 2fna_A Conserved hypothetical 91.9 0.092 3.1E-06 41.8 2.9 25 1-25 38-64 (357)
291 3sop_A Neuronal-specific septi 91.8 0.069 2.3E-06 42.0 2.0 17 1-17 10-26 (270)
292 1u0j_A DNA replication protein 91.8 0.088 3E-06 41.4 2.6 19 1-19 112-130 (267)
293 1oxx_K GLCV, glucose, ABC tran 91.7 0.037 1.3E-06 45.3 0.4 17 1-17 39-55 (353)
294 1ojl_A Transcriptional regulat 91.7 0.071 2.4E-06 42.5 2.1 17 1-17 33-49 (304)
295 3tvt_A Disks large 1 tumor sup 91.6 0.33 1.1E-05 38.6 5.8 17 2-18 106-122 (292)
296 2vhj_A Ntpase P4, P4; non- hyd 91.5 0.084 2.9E-06 42.8 2.3 24 1-24 131-156 (331)
297 2bbs_A Cystic fibrosis transme 91.5 0.063 2.1E-06 42.7 1.5 17 1-17 72-88 (290)
298 2ewv_A Twitching motility prot 91.5 0.077 2.6E-06 43.6 2.1 17 1-17 144-160 (372)
299 3jvv_A Twitching mobility prot 91.4 0.082 2.8E-06 43.3 2.2 17 1-17 131-147 (356)
300 2npi_A Protein CLP1; CLP1-PCF1 91.4 0.077 2.6E-06 45.0 2.1 17 1-17 146-162 (460)
301 1oix_A RAS-related protein RAB 91.4 0.092 3.2E-06 38.4 2.2 16 1-16 37-52 (191)
302 2pt7_A CAG-ALFA; ATPase, prote 91.4 0.068 2.3E-06 43.3 1.6 17 1-17 179-195 (330)
303 1yrb_A ATP(GTP)binding protein 91.3 0.092 3.2E-06 40.3 2.3 25 1-25 22-50 (262)
304 2wsm_A Hydrogenase expression/ 91.3 0.098 3.4E-06 39.0 2.3 17 1-17 38-54 (221)
305 3nh6_A ATP-binding cassette SU 91.3 0.048 1.6E-06 43.8 0.6 17 1-17 88-104 (306)
306 1qvr_A CLPB protein; coiled co 91.2 0.088 3E-06 47.9 2.3 27 1-27 596-627 (854)
307 1kjw_A Postsynaptic density pr 91.1 0.2 6.8E-06 39.9 4.1 17 2-18 111-127 (295)
308 2qm8_A GTPase/ATPase; G protei 91.1 0.094 3.2E-06 42.5 2.2 17 1-17 63-79 (337)
309 3hr8_A Protein RECA; alpha and 91.1 0.093 3.2E-06 43.0 2.2 25 1-25 69-98 (356)
310 1qhl_A Protein (cell division 91.1 0.065 2.2E-06 41.1 1.2 18 1-18 35-52 (227)
311 2yhs_A FTSY, cell division pro 91.0 0.095 3.3E-06 44.9 2.2 17 1-17 301-317 (503)
312 2v3c_C SRP54, signal recogniti 90.9 0.071 2.4E-06 44.8 1.4 26 1-26 107-137 (432)
313 2yv5_A YJEQ protein; hydrolase 90.8 0.098 3.4E-06 41.7 2.1 17 1-18 173-189 (302)
314 3kl4_A SRP54, signal recogniti 90.8 0.1 3.6E-06 43.9 2.2 26 1-26 105-135 (433)
315 2b8t_A Thymidine kinase; deoxy 90.7 0.11 3.8E-06 39.7 2.2 17 1-17 20-36 (223)
316 2f9l_A RAB11B, member RAS onco 90.6 0.12 4.1E-06 37.9 2.2 16 1-16 13-28 (199)
317 3upu_A ATP-dependent DNA helic 90.4 0.12 3.9E-06 43.6 2.2 17 1-17 53-69 (459)
318 1zu4_A FTSY; GTPase, signal re 90.3 0.12 4.1E-06 41.6 2.2 26 1-26 113-143 (320)
319 1xx6_A Thymidine kinase; NESG, 90.3 0.18 6E-06 37.6 2.9 17 1-17 16-32 (191)
320 3lda_A DNA repair protein RAD5 90.3 0.11 3.9E-06 43.2 2.1 14 1-14 186-199 (400)
321 1u0l_A Probable GTPase ENGC; p 90.3 0.091 3.1E-06 41.8 1.4 15 1-15 177-191 (301)
322 1knx_A Probable HPR(Ser) kinas 90.1 0.16 5.3E-06 40.9 2.6 26 1-27 155-180 (312)
323 3f9v_A Minichromosome maintena 90.1 0.066 2.3E-06 46.9 0.5 23 1-23 335-357 (595)
324 2zr9_A Protein RECA, recombina 90.1 0.13 4.4E-06 41.9 2.2 25 1-25 69-98 (349)
325 2r2a_A Uncharacterized protein 90.0 0.15 5.2E-06 38.1 2.4 14 1-14 13-26 (199)
326 1p9r_A General secretion pathw 90.0 0.14 4.7E-06 42.9 2.3 18 1-18 175-192 (418)
327 2wji_A Ferrous iron transport 89.9 0.14 4.9E-06 36.3 2.1 15 1-15 11-25 (165)
328 2rcn_A Probable GTPase ENGC; Y 89.9 0.13 4.6E-06 42.1 2.1 16 1-16 223-238 (358)
329 2www_A Methylmalonic aciduria 89.8 0.14 4.9E-06 41.6 2.2 17 1-17 82-98 (349)
330 3ea0_A ATPase, para family; al 89.8 0.21 7.1E-06 37.8 3.0 25 2-26 14-44 (245)
331 2dpy_A FLII, flagellum-specifi 89.6 0.16 5.6E-06 42.7 2.5 18 1-18 165-182 (438)
332 1nij_A Hypothetical protein YJ 89.6 0.13 4.5E-06 41.2 1.8 16 1-16 12-27 (318)
333 3p32_A Probable GTPase RV1496/ 89.5 0.15 5.3E-06 41.4 2.2 25 1-25 87-116 (355)
334 3dm5_A SRP54, signal recogniti 89.5 0.15 5.2E-06 43.0 2.2 27 1-27 108-139 (443)
335 2r8r_A Sensor protein; KDPD, P 89.5 0.16 5.6E-06 38.9 2.2 19 87-105 157-175 (228)
336 1ls1_A Signal recognition part 89.3 0.16 5.6E-06 40.3 2.2 17 1-17 106-122 (295)
337 2zts_A Putative uncharacterize 89.3 0.17 5.7E-06 38.3 2.1 15 1-15 38-52 (251)
338 2dyk_A GTP-binding protein; GT 89.3 0.19 6.4E-06 35.0 2.2 16 1-16 9-24 (161)
339 1yqt_A RNAse L inhibitor; ATP- 89.1 0.16 5.5E-06 43.9 2.1 17 1-17 55-71 (538)
340 2ce2_X GTPase HRAS; signaling 89.1 0.19 6.6E-06 34.9 2.2 16 1-16 11-26 (166)
341 2zej_A Dardarin, leucine-rich 89.0 0.15 5.1E-06 36.9 1.6 15 1-15 10-24 (184)
342 2obl_A ESCN; ATPase, hydrolase 88.9 0.2 7E-06 40.7 2.5 18 1-18 79-96 (347)
343 2oap_1 GSPE-2, type II secreti 88.9 0.16 5.6E-06 43.5 2.0 18 1-18 268-285 (511)
344 1j8m_F SRP54, signal recogniti 88.9 0.16 5.4E-06 40.5 1.8 25 1-25 106-135 (297)
345 2hf9_A Probable hydrogenase ni 88.9 0.19 6.5E-06 37.5 2.2 17 1-17 46-62 (226)
346 1z2a_A RAS-related protein RAB 88.8 0.2 6.9E-06 35.0 2.2 15 1-15 13-27 (168)
347 2z43_A DNA repair and recombin 88.8 0.25 8.5E-06 39.6 2.9 17 1-17 115-131 (324)
348 3euj_A Chromosome partition pr 88.6 0.19 6.4E-06 42.9 2.1 17 1-17 37-53 (483)
349 2wjg_A FEOB, ferrous iron tran 88.5 0.2 7E-06 35.9 2.1 15 1-15 15-29 (188)
350 2gj8_A MNME, tRNA modification 88.5 0.21 7E-06 35.8 2.1 16 1-16 12-27 (172)
351 3b5x_A Lipid A export ATP-bind 88.5 0.18 6E-06 43.9 2.0 17 1-17 377-393 (582)
352 2p67_A LAO/AO transport system 88.4 0.21 7.1E-06 40.4 2.2 17 1-17 64-80 (341)
353 3b60_A Lipid A export ATP-bind 88.2 0.16 5.6E-06 44.1 1.6 17 1-17 377-393 (582)
354 1kao_A RAP2A; GTP-binding prot 88.2 0.24 8.4E-06 34.4 2.2 16 1-16 11-26 (167)
355 1v5w_A DMC1, meiotic recombina 88.1 0.21 7.1E-06 40.5 2.1 16 1-16 130-145 (343)
356 1pui_A ENGB, probable GTP-bind 88.1 0.11 3.8E-06 38.2 0.4 15 1-15 34-48 (210)
357 3e1s_A Exodeoxyribonuclease V, 88.1 0.21 7.3E-06 43.5 2.2 17 1-17 212-228 (574)
358 1tf7_A KAIC; homohexamer, hexa 88.1 0.2 7E-06 42.9 2.1 13 1-13 47-59 (525)
359 1u94_A RECA protein, recombina 87.9 0.23 7.8E-06 40.6 2.2 24 1-24 71-99 (356)
360 1u8z_A RAS-related protein RAL 87.9 0.26 8.7E-06 34.3 2.2 16 1-16 12-27 (168)
361 3k9g_A PF-32 protein; ssgcid, 87.8 0.25 8.5E-06 38.1 2.3 25 2-26 37-65 (267)
362 2qag_B Septin-6, protein NEDD5 87.7 0.2 6.8E-06 42.1 1.8 16 1-16 50-65 (427)
363 3ozx_A RNAse L inhibitor; ATP 87.6 0.19 6.4E-06 43.5 1.6 17 1-17 33-49 (538)
364 1xp8_A RECA protein, recombina 87.6 0.29 9.8E-06 40.2 2.6 25 1-25 82-111 (366)
365 4dzz_A Plasmid partitioning pr 87.6 0.25 8.5E-06 36.2 2.1 24 2-25 11-39 (206)
366 3j16_B RLI1P; ribosome recycli 87.6 0.23 7.9E-06 43.6 2.1 17 1-17 111-127 (608)
367 3ozx_A RNAse L inhibitor; ATP 87.5 0.19 6.6E-06 43.4 1.6 17 1-17 302-318 (538)
368 2ged_A SR-beta, signal recogni 87.4 0.28 9.6E-06 35.4 2.2 16 1-16 56-71 (193)
369 2i1q_A DNA repair and recombin 87.3 0.25 8.5E-06 39.4 2.1 16 1-16 106-121 (322)
370 1tq4_A IIGP1, interferon-induc 87.3 0.25 8.7E-06 41.2 2.1 15 1-15 77-91 (413)
371 1nrj_B SR-beta, signal recogni 87.2 0.28 9.6E-06 36.3 2.2 17 1-17 20-36 (218)
372 3q72_A GTP-binding protein RAD 87.2 0.26 8.8E-06 34.5 1.9 14 1-14 10-23 (166)
373 1tf7_A KAIC; homohexamer, hexa 87.2 0.25 8.6E-06 42.4 2.1 17 1-17 289-305 (525)
374 3q85_A GTP-binding protein REM 87.2 0.28 9.5E-06 34.4 2.1 15 1-15 10-24 (169)
375 1yqt_A RNAse L inhibitor; ATP- 87.1 0.26 8.8E-06 42.6 2.1 17 1-17 320-336 (538)
376 2yl4_A ATP-binding cassette SU 87.0 0.18 6E-06 44.0 1.1 17 1-17 378-394 (595)
377 1z08_A RAS-related protein RAB 87.0 0.31 1.1E-05 34.1 2.2 16 1-16 14-29 (170)
378 2nzj_A GTP-binding protein REM 87.0 0.29 1E-05 34.4 2.1 15 1-15 12-26 (175)
379 1ek0_A Protein (GTP-binding pr 87.0 0.31 1.1E-05 34.0 2.2 15 1-15 11-25 (170)
380 2erx_A GTP-binding protein DI- 86.9 0.3 1E-05 34.2 2.1 15 1-15 11-25 (172)
381 3bh0_A DNAB-like replicative h 86.9 0.28 9.5E-06 39.2 2.1 17 1-17 76-92 (315)
382 1z0j_A RAB-22, RAS-related pro 86.9 0.32 1.1E-05 34.0 2.2 16 1-16 14-29 (170)
383 1ky3_A GTP-binding protein YPT 86.9 0.32 1.1E-05 34.4 2.2 15 1-15 16-30 (182)
384 2j37_W Signal recognition part 86.8 0.28 9.5E-06 42.1 2.2 26 1-26 109-139 (504)
385 1g16_A RAS-related protein SEC 86.8 0.32 1.1E-05 34.0 2.2 15 1-15 11-25 (170)
386 2ffh_A Protein (FFH); SRP54, s 86.8 0.29 9.9E-06 41.1 2.2 26 1-26 106-136 (425)
387 1wms_A RAB-9, RAB9, RAS-relate 86.8 0.32 1.1E-05 34.3 2.2 15 1-15 15-29 (177)
388 1c1y_A RAS-related protein RAP 86.8 0.32 1.1E-05 33.9 2.2 15 1-15 11-25 (167)
389 3qf4_B Uncharacterized ABC tra 86.7 0.2 6.7E-06 43.8 1.2 17 1-17 389-405 (598)
390 2xj4_A MIPZ; replication, cell 86.7 0.33 1.1E-05 38.0 2.5 25 2-26 14-43 (286)
391 2hxs_A RAB-26, RAS-related pro 86.7 0.34 1.2E-05 34.2 2.3 15 1-15 14-28 (178)
392 1f2t_A RAD50 ABC-ATPase; DNA d 86.6 0.32 1.1E-05 34.4 2.1 17 1-17 31-47 (149)
393 3bk7_A ABC transporter ATP-bin 86.6 0.23 7.9E-06 43.6 1.6 17 1-17 125-141 (607)
394 1byi_A Dethiobiotin synthase; 86.5 0.31 1.1E-05 36.3 2.1 21 2-22 11-34 (224)
395 3bk7_A ABC transporter ATP-bin 86.4 0.29 9.9E-06 42.9 2.1 17 1-17 390-406 (607)
396 2ph1_A Nucleotide-binding prot 86.4 0.36 1.2E-05 37.2 2.5 25 2-26 28-57 (262)
397 1t9h_A YLOQ, probable GTPase E 86.4 0.11 3.9E-06 41.6 -0.5 15 1-15 181-195 (307)
398 3kjh_A CO dehydrogenase/acetyl 86.4 0.27 9.4E-06 37.0 1.8 25 2-26 9-38 (254)
399 3con_A GTPase NRAS; structural 86.4 0.34 1.2E-05 34.8 2.2 16 1-16 29-44 (190)
400 2fn4_A P23, RAS-related protei 86.2 0.36 1.2E-05 34.1 2.2 16 1-16 17-32 (181)
401 1r2q_A RAS-related protein RAB 86.2 0.36 1.2E-05 33.7 2.2 15 1-15 14-28 (170)
402 3j16_B RLI1P; ribosome recycli 86.1 0.31 1.1E-05 42.8 2.1 17 1-17 386-402 (608)
403 1m7b_A RND3/RHOE small GTP-bin 86.0 0.36 1.2E-05 34.6 2.2 16 1-16 15-30 (184)
404 4b3f_X DNA-binding protein smu 86.0 0.32 1.1E-05 42.7 2.2 15 1-15 213-227 (646)
405 2r6a_A DNAB helicase, replicat 85.9 0.34 1.2E-05 40.7 2.2 16 1-16 211-226 (454)
406 2qnr_A Septin-2, protein NEDD5 85.8 0.28 9.6E-06 39.0 1.6 15 1-15 26-40 (301)
407 1z0f_A RAB14, member RAS oncog 85.8 0.38 1.3E-05 33.9 2.2 16 1-16 23-38 (179)
408 3tw8_B RAS-related protein RAB 85.8 0.34 1.2E-05 34.2 1.9 15 1-15 17-31 (181)
409 3io5_A Recombination and repai 85.8 0.35 1.2E-05 39.1 2.1 16 1-16 36-51 (333)
410 4dsu_A GTPase KRAS, isoform 2B 85.7 0.39 1.3E-05 34.2 2.2 16 1-16 12-27 (189)
411 4ag6_A VIRB4 ATPase, type IV s 85.7 0.36 1.2E-05 39.6 2.2 17 1-17 43-59 (392)
412 1m2o_B GTP-binding protein SAR 85.6 0.39 1.3E-05 34.9 2.2 15 1-15 31-45 (190)
413 3cwq_A Para family chromosome 85.6 0.37 1.2E-05 36.0 2.1 25 2-26 10-38 (209)
414 3bc1_A RAS-related protein RAB 85.6 0.4 1.4E-05 34.3 2.2 15 1-15 19-33 (195)
415 2xxa_A Signal recognition part 85.5 0.36 1.2E-05 40.5 2.2 26 1-26 108-139 (433)
416 2lkc_A Translation initiation 85.5 0.37 1.3E-05 34.0 2.0 15 1-15 16-30 (178)
417 3szr_A Interferon-induced GTP- 85.5 0.34 1.2E-05 42.4 2.1 16 1-16 53-68 (608)
418 2xkx_A Disks large homolog 4; 85.5 2.2 7.4E-05 38.1 7.3 17 2-18 537-553 (721)
419 3bfv_A CAPA1, CAPB2, membrane 85.4 0.43 1.5E-05 37.3 2.5 25 2-26 92-121 (271)
420 4akg_A Glutathione S-transfera 85.4 0.38 1.3E-05 49.0 2.6 22 1-22 653-674 (2695)
421 3k53_A Ferrous iron transport 85.4 0.36 1.2E-05 37.4 2.1 16 1-16 11-26 (271)
422 3t1o_A Gliding protein MGLA; G 85.4 0.41 1.4E-05 34.3 2.2 17 1-17 22-38 (198)
423 2y8e_A RAB-protein 6, GH09086P 85.4 0.39 1.3E-05 33.9 2.1 15 1-15 22-36 (179)
424 1r8s_A ADP-ribosylation factor 85.4 0.44 1.5E-05 33.2 2.3 15 1-15 8-22 (164)
425 1upt_A ARL1, ADP-ribosylation 85.4 0.42 1.4E-05 33.5 2.2 15 1-15 15-29 (171)
426 3clv_A RAB5 protein, putative; 85.3 0.42 1.4E-05 34.3 2.2 16 1-16 15-30 (208)
427 3cio_A ETK, tyrosine-protein k 85.2 0.43 1.5E-05 37.8 2.4 25 2-26 114-143 (299)
428 2a5y_B CED-4; apoptosis; HET: 85.2 0.37 1.3E-05 41.4 2.2 15 1-15 160-174 (549)
429 1svi_A GTP-binding protein YSX 85.2 0.36 1.2E-05 34.8 1.8 15 1-15 31-45 (195)
430 1zcb_A G alpha I/13; GTP-bindi 85.2 0.35 1.2E-05 39.6 1.9 14 1-14 41-54 (362)
431 2bme_A RAB4A, RAS-related prot 85.1 0.43 1.5E-05 34.0 2.2 15 1-15 18-32 (186)
432 4a82_A Cystic fibrosis transme 85.1 0.17 5.8E-06 44.0 -0.0 17 1-17 375-391 (578)
433 2a9k_A RAS-related protein RAL 85.1 0.43 1.5E-05 33.9 2.2 15 1-15 26-40 (187)
434 1z6t_A APAF-1, apoptotic prote 85.1 0.32 1.1E-05 41.9 1.7 15 1-15 155-169 (591)
435 3qf4_A ABC transporter, ATP-bi 85.0 0.21 7.1E-06 43.6 0.5 17 1-17 377-393 (587)
436 2efe_B Small GTP-binding prote 84.9 0.46 1.6E-05 33.7 2.2 15 1-15 20-34 (181)
437 2cxx_A Probable GTP-binding pr 84.9 0.39 1.3E-05 34.4 1.8 15 1-15 9-23 (190)
438 3kkq_A RAS-related protein M-R 84.8 0.43 1.5E-05 34.0 2.1 16 1-16 26-41 (183)
439 3lxx_A GTPase IMAP family memb 84.8 0.42 1.4E-05 36.2 2.1 15 1-15 37-51 (239)
440 2gk6_A Regulator of nonsense t 84.8 0.4 1.4E-05 42.0 2.2 17 1-17 203-219 (624)
441 2fz4_A DNA repair protein RAD2 84.8 0.6 2E-05 35.6 3.0 20 1-20 116-135 (237)
442 2g6b_A RAS-related protein RAB 84.7 0.46 1.6E-05 33.6 2.2 15 1-15 18-32 (180)
443 3pqc_A Probable GTP-binding pr 84.6 0.37 1.3E-05 34.5 1.7 16 1-16 31-46 (195)
444 3rhf_A Putative polyphosphate 84.5 6.2 0.00021 31.2 8.7 20 88-107 182-201 (289)
445 2oil_A CATX-8, RAS-related pro 84.5 0.47 1.6E-05 34.2 2.2 15 1-15 33-47 (193)
446 1mh1_A RAC1; GTP-binding, GTPa 84.3 0.49 1.7E-05 33.6 2.2 15 1-15 13-27 (186)
447 1g3q_A MIND ATPase, cell divis 84.1 0.46 1.6E-05 35.6 2.1 25 2-26 12-41 (237)
448 3q9l_A Septum site-determining 84.1 0.46 1.6E-05 36.1 2.1 25 2-26 12-41 (260)
449 2j9r_A Thymidine kinase; TK1, 84.1 0.49 1.7E-05 35.9 2.2 17 1-17 36-52 (214)
450 1w36_D RECD, exodeoxyribonucle 84.1 0.45 1.5E-05 41.6 2.2 17 1-17 172-188 (608)
451 2qag_C Septin-7; cell cycle, c 84.0 0.37 1.3E-05 40.3 1.6 15 1-15 39-53 (418)
452 1fzq_A ADP-ribosylation factor 84.0 0.45 1.5E-05 34.2 1.9 16 1-16 24-39 (181)
453 3ihw_A Centg3; RAS, centaurin, 83.9 0.53 1.8E-05 34.0 2.2 15 1-15 28-42 (184)
454 3la6_A Tyrosine-protein kinase 83.8 0.55 1.9E-05 37.0 2.4 25 2-26 102-131 (286)
455 1vg8_A RAS-related protein RAB 83.8 0.54 1.8E-05 34.2 2.2 16 1-16 16-31 (207)
456 1ega_A Protein (GTP-binding pr 83.8 0.46 1.6E-05 37.6 2.0 15 1-15 16-30 (301)
457 3t5g_A GTP-binding protein RHE 83.6 0.52 1.8E-05 33.5 2.1 15 1-15 14-28 (181)
458 3tkl_A RAS-related protein RAB 83.6 0.55 1.9E-05 33.8 2.2 22 163-184 162-183 (196)
459 2atv_A RERG, RAS-like estrogen 83.5 0.56 1.9E-05 34.0 2.2 16 1-16 36-51 (196)
460 3dz8_A RAS-related protein RAB 83.5 0.58 2E-05 33.8 2.3 17 1-17 31-47 (191)
461 1ksh_A ARF-like protein 2; sma 83.4 0.49 1.7E-05 33.8 1.9 15 1-15 26-40 (186)
462 3oes_A GTPase rhebl1; small GT 83.4 0.56 1.9E-05 34.2 2.2 15 1-15 32-46 (201)
463 2fg5_A RAB-22B, RAS-related pr 83.3 0.58 2E-05 33.8 2.2 16 1-16 31-46 (192)
464 2bov_A RAla, RAS-related prote 83.3 0.56 1.9E-05 34.0 2.2 16 1-16 22-37 (206)
465 1f6b_A SAR1; gtpases, N-termin 83.3 0.41 1.4E-05 35.0 1.4 15 1-15 33-47 (198)
466 2gf9_A RAS-related protein RAB 83.2 0.58 2E-05 33.6 2.2 15 1-15 30-44 (189)
467 3bwd_D RAC-like GTP-binding pr 83.2 0.58 2E-05 33.1 2.2 16 1-16 16-31 (182)
468 1z06_A RAS-related protein RAB 83.2 0.59 2E-05 33.6 2.2 15 1-15 28-42 (189)
469 1gwn_A RHO-related GTP-binding 83.1 0.58 2E-05 34.5 2.2 16 1-16 36-51 (205)
470 2gf0_A GTP-binding protein DI- 83.0 0.6 2.1E-05 33.6 2.2 15 1-15 16-30 (199)
471 1cp2_A CP2, nitrogenase iron p 83.0 0.54 1.9E-05 36.1 2.1 25 2-26 10-39 (269)
472 3ice_A Transcription terminati 82.9 0.56 1.9E-05 39.1 2.2 17 1-17 182-198 (422)
473 2ew1_A RAS-related protein RAB 82.9 0.6 2E-05 34.4 2.2 15 1-15 34-48 (201)
474 2afh_E Nitrogenase iron protei 82.9 0.54 1.9E-05 36.6 2.1 25 2-26 11-40 (289)
475 3c5c_A RAS-like protein 12; GD 82.7 0.63 2.2E-05 33.6 2.2 16 1-16 29-44 (187)
476 1moz_A ARL1, ADP-ribosylation 82.7 0.36 1.2E-05 34.3 0.9 14 1-14 26-39 (183)
477 1x3s_A RAS-related protein RAB 82.7 0.62 2.1E-05 33.4 2.2 16 1-16 23-38 (195)
478 1zj6_A ADP-ribosylation factor 82.6 0.59 2E-05 33.5 2.1 15 1-15 24-38 (187)
479 1zbd_A Rabphilin-3A; G protein 82.6 0.59 2E-05 34.0 2.1 15 1-15 16-30 (203)
480 2a5j_A RAS-related protein RAB 82.5 0.64 2.2E-05 33.5 2.2 15 1-15 29-43 (191)
481 2q6t_A DNAB replication FORK h 82.5 0.59 2E-05 39.1 2.2 16 1-16 208-223 (444)
482 1zd9_A ADP-ribosylation factor 82.4 0.64 2.2E-05 33.4 2.2 15 1-15 30-44 (188)
483 2xtp_A GTPase IMAP family memb 82.4 0.6 2.1E-05 35.7 2.1 16 1-16 30-45 (260)
484 2iwr_A Centaurin gamma 1; ANK 82.3 0.48 1.6E-05 33.6 1.4 15 1-15 15-29 (178)
485 2fh5_B SR-beta, signal recogni 82.3 0.65 2.2E-05 34.1 2.2 16 1-16 15-30 (214)
486 2p5s_A RAS and EF-hand domain 82.3 0.65 2.2E-05 33.8 2.2 15 1-15 36-50 (199)
487 1hyq_A MIND, cell division inh 82.2 0.61 2.1E-05 35.6 2.1 25 2-26 12-41 (263)
488 2iw3_A Elongation factor 3A; a 82.1 0.55 1.9E-05 43.5 2.1 15 1-15 469-483 (986)
489 2bcg_Y Protein YP2, GTP-bindin 82.0 0.67 2.3E-05 33.8 2.2 15 1-15 16-30 (206)
490 3reg_A RHO-like small GTPase; 81.9 0.69 2.4E-05 33.4 2.2 16 1-16 31-46 (194)
491 2fv8_A H6, RHO-related GTP-bin 81.9 0.7 2.4E-05 33.9 2.2 15 1-15 33-47 (207)
492 3cbq_A GTP-binding protein REM 81.9 0.49 1.7E-05 34.6 1.4 14 1-14 31-44 (195)
493 3end_A Light-independent proto 81.9 0.62 2.1E-05 36.6 2.1 24 2-25 50-78 (307)
494 2gno_A DNA polymerase III, gam 81.8 0.57 1.9E-05 37.3 1.8 16 1-16 26-41 (305)
495 4a1f_A DNAB helicase, replicat 81.7 0.67 2.3E-05 37.6 2.2 16 1-16 54-69 (338)
496 2b6h_A ADP-ribosylation factor 81.6 0.63 2.2E-05 33.8 1.9 15 1-15 37-51 (192)
497 3qks_A DNA double-strand break 81.6 0.69 2.3E-05 34.4 2.1 19 1-19 31-49 (203)
498 3zq6_A Putative arsenical pump 81.5 0.65 2.2E-05 37.1 2.1 25 2-26 23-52 (324)
499 1ni3_A YCHF GTPase, YCHF GTP-b 81.4 0.68 2.3E-05 38.3 2.2 15 1-15 28-42 (392)
500 1p6x_A Thymidine kinase; P-loo 81.4 2.4 8.4E-05 34.2 5.4 19 1-19 15-33 (334)
No 1
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=99.97 E-value=3.2e-29 Score=198.78 Aligned_cols=189 Identities=74% Similarity=1.167 Sum_probs=148.7
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHHHHHhCCCCHHHHHHHhcchhhHHHHHHHHHHHhcc-CCcEEEeCCceeeCHh
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFREKETEVLQKLSLM-RQLVVSTGGGAVTRPI 79 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~~~~~~g~~~~~~~~~~~~~~~~~~e~~~~~~l~~~-~~~vi~~g~~~v~~~~ 79 (193)
+|||||||+++.|++.+|++++|+|.+++....|.++.+++...|+..|+..+..++..+... .++||++|+|+++.+.
T Consensus 56 ~~GsGKSTl~~~La~~lg~~~~d~d~~~~~~~~g~~i~~i~~~~ge~~fr~~e~~~l~~l~~~~~~~Via~GgG~v~~~~ 135 (250)
T 3nwj_A 56 MMGSGKTTVGKIMARSLGYTFFDCDTLIEQAMKGTSVAEIFEHFGESVFREKETEALKKLSLMYHQVVVSTGGGAVIRPI 135 (250)
T ss_dssp STTSCHHHHHHHHHHHHTCEEEEHHHHHHHHSTTSCHHHHHHHHCHHHHHHHHHHHHHHHHHHCSSEEEECCGGGGGSHH
T ss_pred CCCCCHHHHHHHHHHhcCCcEEeCcHHHHHHhcCccHHHHHHHhCcHHHHHHHHHHHHHHHhhcCCcEEecCCCeecCHH
Confidence 699999999999999999999999999887655788999998889999998888888887765 6789999999999999
Q ss_pred hHHhccCCeEEEEECCHHHHHHHHhccCCCCCCccccCCCCChhHHHHHHHHHHHHHHHHHHhhccceeechhhhhhccc
Q 029455 80 NWRYMQKGISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVSLENIAVKLGH 159 (193)
Q Consensus 80 ~~~~l~~~~vV~L~~~~~~~~~Rl~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~r~~~y~~~~~~i~~~~~~~~~~~ 159 (193)
++..++.+++|||++|++++.+|+.+++.+.||+.....+.+.++...+.+..++.+|.+.|..++.+|+.+++..+..+
T Consensus 136 ~~~~l~~~~vV~L~a~~e~l~~Rl~~~~~~~Rpl~~~~~~~d~~~~~~~~l~~l~~eR~~lY~~ad~vi~~~~~~~~~~~ 215 (250)
T 3nwj_A 136 NWKYMHKGISIWLDVPLEALAHRIAAVGTGSRPLLHDDESGDTYTAALNRLSTIWDARGEAYTKASARVSLENITLKLGY 215 (250)
T ss_dssp HHHHHTTSEEEEEECCHHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHHHTTSSEEEEHHHHHHHHTC
T ss_pred HHHHHhCCcEEEEECCHHHHHHHHhhcCCCCCCcccCCCcccchhhHHHHHHHHHHHHHHHHhhCCEEEEeccccccccc
Confidence 99888778999999999999999986433468876542222222234577889999999999999999876667777778
Q ss_pred ccCCCCCHHHHHHHHHHHHHhhhcccchhh
Q 029455 160 KDVSSLTPVTIAIEALEQIEGFLKEEDDMA 189 (193)
Q Consensus 160 iDt~~~~~~~~~~~i~~~~~~~~~~~~~~~ 189 (193)
|||+.++++++++.|++++..+++.+..|+
T Consensus 216 iDTs~~s~eev~~~I~~~i~~~~~~~~~~~ 245 (250)
T 3nwj_A 216 RSVSDLTPAEIAIEAFEQVQSYLEKEDGMA 245 (250)
T ss_dssp SSGGGCCHHHHHHHHHHHHHHHHHTC----
T ss_pred ccCCCCCHHHHHHHHHHHHHHHhhcccccC
Confidence 899999999999999999999987776553
No 2
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=99.94 E-value=1.1e-25 Score=172.32 Aligned_cols=164 Identities=30% Similarity=0.466 Sum_probs=137.2
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHHHHHhCCCCHHHHHHHhcchhhHHHHHHHHHHHhccCCcEEEeCCceeeCHhh
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFREKETEVLQKLSLMRQLVVSTGGGAVTRPIN 80 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~~~~~~g~~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~vi~~g~~~v~~~~~ 80 (193)
+|||||||+++.|++.+|+++++.|.++.... |.++.+++...|+..|+..+..++..+....++||++|++.+....+
T Consensus 33 ~~GsGKsTl~~~La~~l~~~~i~~d~~~~~~~-g~~i~~~~~~~~~~~~~~~e~~~l~~l~~~~~~vi~~ggg~~~~~~~ 111 (199)
T 3vaa_A 33 YMGAGKTTLGKAFARKLNVPFIDLDWYIEERF-HKTVGELFTERGEAGFRELERNMLHEVAEFENVVISTGGGAPCFYDN 111 (199)
T ss_dssp CTTSCHHHHHHHHHHHHTCCEEEHHHHHHHHH-TSCHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEEEECCTTGGGSTTH
T ss_pred CCCCCHHHHHHHHHHHcCCCEEcchHHHHHHh-CCcHHHHHHhcChHHHHHHHHHHHHHHhhcCCcEEECCCcEEccHHH
Confidence 69999999999999999999999999998888 89999998888888899888888888876678899989888888887
Q ss_pred HHhcc-CCeEEEEECCHHHHHHHHh-ccCCCCCCccccCCCCChhHHHHHHHHHHHHHHHHHHhhccceeechhhhhhcc
Q 029455 81 WRYMQ-KGISVWLDVPLEALAQRIA-AVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVSLENIAVKLG 158 (193)
Q Consensus 81 ~~~l~-~~~vV~L~~~~~~~~~Rl~-~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~r~~~y~~~~~~i~~~~~~~~~~ 158 (193)
+..+. .+.+|||++|++++.+|+. .+ +.||.... .+ .++..+.+.+++.+|.+.|..++.+|
T Consensus 112 ~~~l~~~~~vi~L~~~~e~l~~Rl~~~~--~~Rp~~~~---~~-~~~~~~~i~~~~~~r~~~y~~ad~~I---------- 175 (199)
T 3vaa_A 112 MEFMNRTGKTVFLNVHPDVLFRRLRIAK--QQRPILQG---KE-DDELMDFIIQALEKRAPFYTQAQYIF---------- 175 (199)
T ss_dssp HHHHHHHSEEEEEECCHHHHHHHHHHTG--GGCGGGTT---CC-HHHHHHHHHHHHHHHHHHHTTSSEEE----------
T ss_pred HHHHHcCCEEEEEECCHHHHHHHHhcCC--CCCCCcCC---CC-hhhHHHHHHHHHHHHHHHHhhCCEEE----------
Confidence 77665 3899999999999999998 43 35776543 11 11235678888999999998877775
Q ss_pred cccCCCCCHHHHHHHHHHHHHhhhc
Q 029455 159 HKDVSSLTPVTIAIEALEQIEGFLK 183 (193)
Q Consensus 159 ~iDt~~~~~~~~~~~i~~~~~~~~~ 183 (193)
||+..++++++++|.+.+...++
T Consensus 176 --dt~~~s~ee~~~~I~~~l~~~l~ 198 (199)
T 3vaa_A 176 --NADELEDRWQIESSVQRLQELLE 198 (199)
T ss_dssp --ECCCCSSHHHHHHHHHHHHHHTT
T ss_pred --ECCCCCHHHHHHHHHHHHHHHhc
Confidence 88889999999999999987763
No 3
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=99.94 E-value=1.7e-25 Score=168.79 Aligned_cols=163 Identities=29% Similarity=0.509 Sum_probs=134.2
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHHHHHhCCCCHHHHHHHhcchhhHHHHHHHHHHHhccCCcEEEeCCceeeCHhh
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFREKETEVLQKLSLMRQLVVSTGGGAVTRPIN 80 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~~~~~~g~~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~vi~~g~~~v~~~~~ 80 (193)
+|||||||+|+.|++++|++++|+|.+++... |.++.+++...|+..|+..+..++..+....++|+.+|+++++.+.+
T Consensus 13 ~~GsGKst~a~~La~~l~~~~i~~d~~~~~~~-g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~vi~~gg~~~~~~~~ 91 (185)
T 3trf_A 13 LMGAGKTSVGSQLAKLTKRILYDSDKEIEKRT-GADIAWIFEMEGEAGFRRREREMIEALCKLDNIILATGGGVVLDEKN 91 (185)
T ss_dssp STTSSHHHHHHHHHHHHCCCEEEHHHHHHHHH-TSCHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCEEECCTTGGGSHHH
T ss_pred CCCCCHHHHHHHHHHHhCCCEEEChHHHHHHc-CCChhhHHHHhCHHHHHHHHHHHHHHHHhcCCcEEecCCceecCHHH
Confidence 69999999999999999999999999998888 88888988888888899888888888876677899999899998888
Q ss_pred HHhccC-CeEEEEECCHHHHHHHHhccCCCCCCccccCCCCChhHHHHHHHHHHHHHHHHHHhh-ccceeechhhhhhcc
Q 029455 81 WRYMQK-GISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYAN-ANARVSLENIAVKLG 158 (193)
Q Consensus 81 ~~~l~~-~~vV~L~~~~~~~~~Rl~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~r~~~y~~-~~~~i~~~~~~~~~~ 158 (193)
+..+.. +.+|||++|++++.+|+..+....||.... . ...+.+..++.+|.+.|.. ++.+|
T Consensus 92 ~~~l~~~~~vi~L~~~~e~l~~Rl~~~~~~~rp~~~~---~----~~~~~l~~~~~~r~~~y~~~ad~~I---------- 154 (185)
T 3trf_A 92 RQQISETGVVIYLTASIDTQLKRIGQKGEMRRPLFIK---N----NSKEKLQQLNEIRKPLYQAMADLVY---------- 154 (185)
T ss_dssp HHHHHHHEEEEEEECCHHHHHHHHHCCTTCSSCCCCC---H----HHHHHHHHHHHHHHHHHHHHCSEEE----------
T ss_pred HHHHHhCCcEEEEECCHHHHHHHHhhcCCCCCCCCCC---C----CHHHHHHHHHHHHHHHHhhcCCEEE----------
Confidence 877764 789999999999999993211245776543 1 2356788888999999987 78775
Q ss_pred cccCCCCCHHHHHHHHHHHHHhhhc
Q 029455 159 HKDVSSLTPVTIAIEALEQIEGFLK 183 (193)
Q Consensus 159 ~iDt~~~~~~~~~~~i~~~~~~~~~ 183 (193)
||+..+++++++.|.+.+...+.
T Consensus 155 --dt~~~~~~e~~~~I~~~l~~~~~ 177 (185)
T 3trf_A 155 --PTDDLNPRQLATQILVDIKQTYS 177 (185)
T ss_dssp --ECTTCCHHHHHHHHHHHSCC---
T ss_pred --ECCCCCHHHHHHHHHHHHHHHhh
Confidence 78888999999999998877654
No 4
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=99.92 E-value=7e-24 Score=159.91 Aligned_cols=159 Identities=32% Similarity=0.453 Sum_probs=124.9
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHHHHHhCCCCHHHHHHHhcchhhHHHHHHHHHHHhccCCcEEEeCCceeeCHhh
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFREKETEVLQKLSLMRQLVVSTGGGAVTRPIN 80 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~~~~~~g~~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~vi~~g~~~v~~~~~ 80 (193)
+|||||||+|+.|++++|++++|+|.+++... |.++.+++...|+..|+..+..++..+.....+|+.+|+++++.+.+
T Consensus 10 ~~GsGKsT~a~~La~~lg~~~id~D~~~~~~~-g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~vi~~g~~~v~~~~~ 88 (184)
T 2iyv_A 10 LPGSGKSTIGRRLAKALGVGLLDTDVAIEQRT-GRSIADIFATDGEQEFRRIEEDVVRAALADHDGVLSLGGGAVTSPGV 88 (184)
T ss_dssp STTSSHHHHHHHHHHHHTCCEEEHHHHHHHHH-SSCHHHHHHHHCHHHHHHHHHHHHHHHHHHCCSEEECCTTGGGSHHH
T ss_pred CCCCCHHHHHHHHHHHcCCCEEeCchHHHHHc-CCCHHHHHHHhChHHHHHHHHHHHHHHHhcCCeEEecCCcEEcCHHH
Confidence 69999999999999999999999999998887 88888888777777788776667777665567888888778888766
Q ss_pred HHhccCCeEEEEECCHHHHHHHHhccCCCCCCccccCCCCChhHHHHHHHHHHHHHHHHHHhh-ccceeechhhhhhccc
Q 029455 81 WRYMQKGISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYAN-ANARVSLENIAVKLGH 159 (193)
Q Consensus 81 ~~~l~~~~vV~L~~~~~~~~~Rl~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~r~~~y~~-~~~~i~~~~~~~~~~~ 159 (193)
+..+..+.+|||+||++++.+|+.+| ..|+.... .+ ..+.+..++..|.+.|.. ++.+|
T Consensus 89 ~~~l~~~~vV~L~~~~e~~~~Rl~~r--~~r~~~~~---~~----~~~~i~~~~~~r~~~~~~~~~~~I----------- 148 (184)
T 2iyv_A 89 RAALAGHTVVYLEISAAEGVRRTGGN--TVRPLLAG---PD----RAEKYRALMAKRAPLYRRVATMRV----------- 148 (184)
T ss_dssp HHHHTTSCEEEEECCHHHHHHHTTCC--CCCSSTTS---CC----HHHHHHHHHHHHHHHHHHHCSEEE-----------
T ss_pred HHHHcCCeEEEEeCCHHHHHHHHhCC--CCCCCccC---CC----HHHHHHHHHHHHHHHHhccCCEEE-----------
Confidence 66554568999999999999999874 24555432 22 245677777777788865 66664
Q ss_pred ccCCCCCHHHHHHHHHHHHHhh
Q 029455 160 KDVSSLTPVTIAIEALEQIEGF 181 (193)
Q Consensus 160 iDt~~~~~~~~~~~i~~~~~~~ 181 (193)
||+..+++++++.|.+.+...
T Consensus 149 -dt~~~s~ee~~~~I~~~l~~~ 169 (184)
T 2iyv_A 149 -DTNRRNPGAVVRHILSRLQVP 169 (184)
T ss_dssp -ECSSSCHHHHHHHHHTTSCCC
T ss_pred -ECCCCCHHHHHHHHHHHHhhc
Confidence 888799999999998776543
No 5
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=99.91 E-value=1.6e-23 Score=155.85 Aligned_cols=150 Identities=33% Similarity=0.526 Sum_probs=113.8
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHHHHHhCCCCHHHHHHHhcchhhHHHHHHHHHHHhccCCc-EEEeCCceeeCHh
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFREKETEVLQKLSLMRQL-VVSTGGGAVTRPI 79 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~~~~~~g~~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~-vi~~g~~~v~~~~ 79 (193)
+|||||||+|+.||++||++++|+|.+++... |.++.+++..+|+..|+..+..++..+...+++ |+.+|+++++. +
T Consensus 15 ~~GsGKSTva~~La~~lg~~~id~D~~~~~~~-g~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~Vi~~g~g~~~~-~ 92 (168)
T 1zuh_A 15 FMGSGKSSLAQELGLALKLEVLDTDMIISERV-GLSVREIFEELGEDNFRMFEKNLIDELKTLKTPHVISTGGGIVMH-E 92 (168)
T ss_dssp CTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHH-TSCHHHHHHHTCHHHHHHHHHHHHHHHHTCSSCCEEECCGGGGGC-G
T ss_pred CCCCCHHHHHHHHHHHhCCCEEEChHHHHHHh-CCCHHHHHHHhCHHHHHHHHHHHHHHHHhcCCCEEEECCCCEech-h
Confidence 69999999999999999999999999998888 888888888888888887777777777655667 88777677666 3
Q ss_pred hHHhcc-CCeEEEEECCHHHHHHHHhccCCCCCCccccCCCCChhHHHHHHHHHHHHHHHHHHhh-ccceeechhhhhhc
Q 029455 80 NWRYMQ-KGISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYAN-ANARVSLENIAVKL 157 (193)
Q Consensus 80 ~~~~l~-~~~vV~L~~~~~~~~~Rl~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~r~~~y~~-~~~~i~~~~~~~~~ 157 (193)
+ ++ .+.+|||+||++++++|+..|....|+.... .+.+...+..|.+.|.. ++.+|
T Consensus 93 ~---l~~~~~vi~l~~~~e~~~~Rl~~r~~~~r~~~~~----------~~~~~~~~~~r~~~~~~~a~~~I--------- 150 (168)
T 1zuh_A 93 N---LKGLGTTFYLKMDFETLIKRLNQKEREKRPLLNN----------LTQAKELFEKRQALYEKNASFII--------- 150 (168)
T ss_dssp G---GTTSEEEEEEECCHHHHHHHHCC--------CCT----------THHHHHHHHHHHHHHHHTCSEEE---------
T ss_pred H---HhcCCEEEEEECCHHHHHHHHhccCCCCCCCccC----------HHHHHHHHHHHHHHHHHHCCEEE---------
Confidence 3 44 3789999999999999998641113443220 14566777778888876 67775
Q ss_pred ccccCCCCCHHHHHHHHHHHH
Q 029455 158 GHKDVSSLTPVTIAIEALEQI 178 (193)
Q Consensus 158 ~~iDt~~~~~~~~~~~i~~~~ 178 (193)
||+. +++++++.|.+.+
T Consensus 151 ---d~~~-~~e~~~~~I~~~l 167 (168)
T 1zuh_A 151 ---DARG-GLNNSLKQVLQFI 167 (168)
T ss_dssp ---EGGG-CHHHHHHHHHHC-
T ss_pred ---ECCC-CHHHHHHHHHHHh
Confidence 7776 9999999987654
No 6
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=99.91 E-value=3.4e-23 Score=155.11 Aligned_cols=152 Identities=32% Similarity=0.477 Sum_probs=120.2
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHHHHHhCCCCHHHHHHHhcchhhHHHHHHHHHHHhccCCcEEEeCCceeeCHhh
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFREKETEVLQKLSLMRQLVVSTGGGAVTRPIN 80 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~~~~~~g~~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~vi~~g~~~v~~~~~ 80 (193)
+|||||||+|+.||+++|++++|.|.+++... |.++.+++...|+..|+..+..++..+.....+|+.+|++++.. .+
T Consensus 12 ~~GsGKsTla~~La~~l~~~~~d~d~~~~~~~-g~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~vi~~g~~~~~~-~~ 89 (175)
T 1via_A 12 FMGSGKSTLARALAKDLDLVFLDSDFLIEQKF-NQKVSEIFEQKRENFFREQEQKMADFFSSCEKACIATGGGFVNV-SN 89 (175)
T ss_dssp CTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHH-TSCHHHHHHHHCHHHHHHHHHHHHHHHTTCCSEEEECCTTGGGS-TT
T ss_pred CCCCCHHHHHHHHHHHcCCCEEcccHHHHHHc-CCCHHHHHHHcCHHHHHHHHHHHHHHHHccCCEEEECCCCEehh-hH
Confidence 69999999999999999999999999998877 88888888777877888777777777765567788878777766 33
Q ss_pred HHhcc-CCeEEEEECCHHHHHHHHhccCCCCCCccccCCCCChhHHHHHHHHHHHHHHHHHHhh-ccceeechhhhhhcc
Q 029455 81 WRYMQ-KGISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYAN-ANARVSLENIAVKLG 158 (193)
Q Consensus 81 ~~~l~-~~~vV~L~~~~~~~~~Rl~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~r~~~y~~-~~~~i~~~~~~~~~~ 158 (193)
++ .+.+|||++|++++.+|+..+....||.... .+.+...+.+|.+.|.. ++.+
T Consensus 90 ---l~~~~~~i~l~~~~e~~~~R~~~r~~~~r~~~~~----------~~~i~~~~~~r~~~y~~~~~~~----------- 145 (175)
T 1via_A 90 ---LEKAGFCIYLKADFEYLKKRLDKDEISKRPLFYD----------EIKAKKLYNERLSKYEQKANFI----------- 145 (175)
T ss_dssp ---GGGGCEEEEEECCHHHHTTCCCGGGTTTSCTTCC----------HHHHHHHHHHHHHHHHHHCSEE-----------
T ss_pred ---HhcCCEEEEEeCCHHHHHHHHhcccCCCCCCccc----------HHHHHHHHHHHHHHHHhcCCEE-----------
Confidence 44 3789999999999999997641113543321 35677788888888875 5655
Q ss_pred cccCCCCCHHHHHHHHHHHHH
Q 029455 159 HKDVSSLTPVTIAIEALEQIE 179 (193)
Q Consensus 159 ~iDt~~~~~~~~~~~i~~~~~ 179 (193)
|||+..+++++++.|.+.+.
T Consensus 146 -Idt~~~~~eev~~~I~~~l~ 165 (175)
T 1via_A 146 -LNIENKNIDELLSEIKKVIK 165 (175)
T ss_dssp -EECTTCCHHHHHHHHHHHHC
T ss_pred -EECCCCCHHHHHHHHHHHHH
Confidence 48888999999999998874
No 7
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=99.90 E-value=3.3e-22 Score=148.92 Aligned_cols=157 Identities=32% Similarity=0.502 Sum_probs=120.7
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHHHHHhCCCCHHHHHHHhcchhhHHHHHHHHHHHhccCCcEEEeCCceeeCHhh
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFREKETEVLQKLSLMRQLVVSTGGGAVTRPIN 80 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~~~~~~g~~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~vi~~g~~~v~~~~~ 80 (193)
+|||||||+|+.|++.+|++++|.|.+++... |.++.+++...|+..|+..+..++..+. ...+||.+|++.++.+..
T Consensus 10 ~~GsGKsT~a~~La~~lg~~~id~d~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~vi~~g~~~~~~~~~ 87 (173)
T 1e6c_A 10 ARGCGMTTVGRELARALGYEFVDTDIFMQHTS-GMTVADVVAAEGWPGFRRRESEALQAVA-TPNRVVATGGGMVLLEQN 87 (173)
T ss_dssp CTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHH-CSCHHHHHHHHHHHHHHHHHHHHHHHHC-CSSEEEECCTTGGGSHHH
T ss_pred CCCCCHHHHHHHHHHHhCCcEEcccHHHHHHh-CCCHHHHHHHcCHHHHHHHHHHHHHHhh-cCCeEEECCCcEEeCHHH
Confidence 68999999999999999999999999988877 8888887766677777777666666665 556788777777777776
Q ss_pred HHhcc-CCeEEEEECCHHHHHHHHh--ccCCCCCCccccCCCCChhHHHHHHHHHHHHHHHHHHhhccceeechhhhhhc
Q 029455 81 WRYMQ-KGISVWLDVPLEALAQRIA--AVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVSLENIAVKL 157 (193)
Q Consensus 81 ~~~l~-~~~vV~L~~~~~~~~~Rl~--~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~r~~~y~~~~~~i~~~~~~~~~ 157 (193)
+..++ .+.+|||+||++++.+|+. .|. ..|+.... + ...+.+...+..+.+.|..++.+|
T Consensus 88 ~~~l~~~~~~i~l~~~~e~~~~R~~~~~r~-~~r~~~~~----~---~~~~~~~~~~~~~~~~~~~~~~~I--------- 150 (173)
T 1e6c_A 88 RQFMRAHGTVVYLFAPAEELALRLQASLQA-HQRPTLTG----R---PIAEEMEAVLREREALYQDVAHYV--------- 150 (173)
T ss_dssp HHHHHHHSEEEEEECCHHHHHHHHHHHHCS-CCCCCTTH----H---HHHHHHHHHHHHHHHHHHHHCSEE---------
T ss_pred HHHHHcCCeEEEEECCHHHHHHHHhhccCC-CCCCcCCC----C---CHHHHHHHHHHHHHHHHHhCcEEE---------
Confidence 66665 3899999999999999998 641 13554321 1 234567777777777776666654
Q ss_pred ccccCCCCCHHHHHHHHHHHHH
Q 029455 158 GHKDVSSLTPVTIAIEALEQIE 179 (193)
Q Consensus 158 ~~iDt~~~~~~~~~~~i~~~~~ 179 (193)
||++.+++++++.|.+.+.
T Consensus 151 ---d~~~~~~~~~~~~i~~~l~ 169 (173)
T 1e6c_A 151 ---VDATQPPAAIVCELMQTMR 169 (173)
T ss_dssp ---EETTSCHHHHHHHHHHHTT
T ss_pred ---ECCCCCHHHHHHHHHHHhc
Confidence 8887999999999988764
No 8
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=99.88 E-value=6.9e-22 Score=147.30 Aligned_cols=158 Identities=30% Similarity=0.507 Sum_probs=113.8
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHHHHHhCCCCHHHHHHHhcchhhHHHHHHHHHHHhccCCcEEEeCCceeeCHhh
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFREKETEVLQKLSLMRQLVVSTGGGAVTRPIN 80 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~~~~~~g~~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~vi~~g~~~v~~~~~ 80 (193)
+|||||||+++.|++.+|++++|+|.+++... |..+..++...|+..|+..+..++..+....+.++.++++.++....
T Consensus 12 ~~GsGKSTl~~~La~~l~~~~id~d~~~~~~~-~~~i~~i~~~~g~~~~~~~~~~~l~~l~~~~~~v~~~~~~~~~~~~~ 90 (173)
T 1kag_A 12 PMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRT-GADVGWVFDLEGEEGFRDREEKVINELTEKQGIVLATGGGSVKSRET 90 (173)
T ss_dssp CTTSCHHHHHHHHHHHTTCEEEEHHHHHHHHH-TSCHHHHHHHHHHHHHHHHHHHHHHHHHTSSSEEEECCTTGGGSHHH
T ss_pred CCCCCHHHHHHHHHHHhCCCEEeccHHHHHHh-CcCHHHHHHHHhHHHHHHHHHHHHHHHHhCCCeEEECCCeEEecHHH
Confidence 69999999999999999999999999888776 77777777767777787766666776665566777776566666666
Q ss_pred HHhccC-CeEEEEECCHHHHHHHHhccCCCCCCccccCCCCChhHHHHHHHHHHHHHHHHHHhh-ccceeechhhhhhcc
Q 029455 81 WRYMQK-GISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYAN-ANARVSLENIAVKLG 158 (193)
Q Consensus 81 ~~~l~~-~~vV~L~~~~~~~~~Rl~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~r~~~y~~-~~~~i~~~~~~~~~~ 158 (193)
+..++. +++|||++|++++.+|+.+| ..||.... .+. ..+.+..++.+|.+.|.. ++.+
T Consensus 91 ~~~l~~~~~~i~l~~~~~~l~~R~~~r--~~r~~~~~---~~~---~~~~~~~~~~~r~~~~~~~a~~~----------- 151 (173)
T 1kag_A 91 RNRLSARGVVVYLETTIEKQLARTQRD--KKRPLLHV---ETP---PREVLEALANERNPLYEEIADVT----------- 151 (173)
T ss_dssp HHHHHHHSEEEECCCCHHHHHSCC--------CCSSS---SCC---CHHHHHHHHHHHHHHHHHHCSEE-----------
T ss_pred HHHHHhCCEEEEEeCCHHHHHHHHhCC--CCCCCCCC---CCc---hHHHHHHHHHHHHHHHHhhCCEE-----------
Confidence 665654 89999999999999999875 24665432 111 035677778888888876 6665
Q ss_pred cccCCCCCHHHHHHHHHHHHH
Q 029455 159 HKDVSSLTPVTIAIEALEQIE 179 (193)
Q Consensus 159 ~iDt~~~~~~~~~~~i~~~~~ 179 (193)
|||++.+++++++.|.+.+.
T Consensus 152 -id~~~~~~~~~~~~i~~~l~ 171 (173)
T 1kag_A 152 -IRTDDQSAKVVANQIIHMLE 171 (173)
T ss_dssp -C-----CHHHHHHHHHHHHC
T ss_pred -EECCCCCHHHHHHHHHHHHH
Confidence 48888999999999988774
No 9
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=99.88 E-value=1.6e-21 Score=144.62 Aligned_cols=155 Identities=36% Similarity=0.641 Sum_probs=117.0
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHHHHHhCCCCHHHHHHHhcchhhHHHHHHHHHHHhccCCcEEEeCCceeeCHhh
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFREKETEVLQKLSLMRQLVVSTGGGAVTRPIN 80 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~~~~~~g~~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~vi~~g~~~v~~~~~ 80 (193)
+|||||||+|+.|++++|++++++|.+.+... |..+.+++...|+..|+.++..++..+...+.+||++|.+.++.+..
T Consensus 8 ~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~Vi~~g~~~~~~~~~ 86 (168)
T 2pt5_A 8 FMCSGKSTVGSLLSRSLNIPFYDVDEEVQKRE-GLSIPQIFEKKGEAYFRKLEFEVLKDLSEKENVVISTGGGLGANEEA 86 (168)
T ss_dssp CTTSCHHHHHHHHHHHHTCCEEEHHHHHHHHH-TSCHHHHHHHSCHHHHHHHHHHHHHHHTTSSSEEEECCHHHHTCHHH
T ss_pred CCCCCHHHHHHHHHHHhCCCEEECcHHHHHHc-CCCHHHHHHHhChHHHHHHHHHHHHHHhccCCeEEECCCCEeCCHHH
Confidence 68999999999999999999999999998887 88888888777777777666667776664567788766555566666
Q ss_pred HHhcc-CCeEEEEECCHHHHHHHHhccCCCCCCccccCCCCChhHHHHHHHHHHHHHHHHHHhhccceeechhhhhhccc
Q 029455 81 WRYMQ-KGISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVSLENIAVKLGH 159 (193)
Q Consensus 81 ~~~l~-~~~vV~L~~~~~~~~~Rl~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~r~~~y~~~~~~i~~~~~~~~~~~ 159 (193)
+..++ .+.+|||++|++++.+|+.++ ..|+.... ..+.+.+.+.++.+.|..++.+
T Consensus 87 ~~~l~~~~~~i~l~~~~e~~~~R~~~r--~~r~~~~~---------~~~~i~~~~~~~~~~~~~~~~~------------ 143 (168)
T 2pt5_A 87 LNFMKSRGTTVFIDIPFEVFLERCKDS--KERPLLKR---------PLDEIKNLFEERRKIYSKADIK------------ 143 (168)
T ss_dssp HHHHHTTSEEEEEECCHHHHHHHCBCT--TCCBGGGS---------CGGGTHHHHHHHHHHHTTSSEE------------
T ss_pred HHHHHcCCEEEEEECCHHHHHHHHhCC--CCCCCCcc---------hHHHHHHHHHHHHHHHHhCCEE------------
Confidence 66665 379999999999999999874 23554321 0233555666666666555554
Q ss_pred ccCCCCCHHHHHHHHHHHHHh
Q 029455 160 KDVSSLTPVTIAIEALEQIEG 180 (193)
Q Consensus 160 iDt~~~~~~~~~~~i~~~~~~ 180 (193)
| ++..+++++++.|.+.+.+
T Consensus 144 i-~~~~~~~~~~~~i~~~l~~ 163 (168)
T 2pt5_A 144 V-KGEKPPEEVVKEILLSLEG 163 (168)
T ss_dssp E-ECSSCHHHHHHHHHHHHHT
T ss_pred E-CCCCCHHHHHHHHHHHHHh
Confidence 4 4678999999999988864
No 10
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=99.84 E-value=2.5e-20 Score=143.09 Aligned_cols=162 Identities=14% Similarity=0.092 Sum_probs=106.0
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHHHHHh--CCCCHHHHHHHhcchh--hH------------------HHHHHHHH
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQSV--DGTSVAEIFKLYGEGF--FR------------------EKETEVLQ 58 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~~~~~--~g~~~~~~~~~~~~~~--~~------------------~~e~~~~~ 58 (193)
++||||||+|+.||++||++|+| +++++... .|.+. +.+...++.. |+ ..+..++.
T Consensus 14 ~~GsGk~ti~~~la~~lg~~~~D-~~~~~~~a~~~g~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 91 (201)
T 3fdi_A 14 EFGSGGHLVAKKLAEHYNIPLYS-KELLDEVAKDGRYSK-EVLERFDEKPMNFAFIPVPAGGTTISLEQDIAIRQFNFIR 91 (201)
T ss_dssp CTTSSHHHHHHHHHHHTTCCEEC-HHHHHHTTCC----------------------------------CHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhCcCEEC-HHHHHHHHHhcCCCH-HHHHHHhhhchhHHHHHhccccccccccHHHHHHHHHHHH
Confidence 68999999999999999999999 66666543 25553 2333333322 12 34566777
Q ss_pred HHh--ccCCcEEEeCCceeeCHhhHHhccCCeEEEEECCHHHHHHHHhccCCCCCCccccCCCCChhHHHHHHHHHHHHH
Q 029455 59 KLS--LMRQLVVSTGGGAVTRPINWRYMQKGISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEE 136 (193)
Q Consensus 59 ~l~--~~~~~vi~~g~~~v~~~~~~~~l~~~~vV~L~~~~~~~~~Rl~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (193)
++. ..+++|+...++.++.+.+ ++.++|||++|++++.+|+.++. +++ .+++.+.+.+...+
T Consensus 92 ~la~~~~~~~Vi~Gr~g~~vl~~~----~~~~~V~L~A~~e~r~~R~~~~~--~~~----------~~~~~~~i~~~d~~ 155 (201)
T 3fdi_A 92 KKANEEKESFVIVGRCAEEILSDN----PNMISAFILGDKDTKTKRVMERE--GVD----------EKTALNMMKKMDKM 155 (201)
T ss_dssp HHHHTSCCCEEEESTTHHHHTTTC----TTEEEEEEEECHHHHHHHHHHHH--TCC----------HHHHHHHHHHHHHH
T ss_pred HHHhhcCCCEEEEECCcchhcCCC----CCeEEEEEECCHHHHHHHHHHHh--CCC----------HHHHHHHHHHHHHH
Confidence 787 6677888643332222221 12589999999999999998631 122 11456778888888
Q ss_pred HHHHHhhccceeechhhhhhcccccCCCCCHHHHHHHHHHHHHhh
Q 029455 137 RGEAYANANARVSLENIAVKLGHKDVSSLTPVTIAIEALEQIEGF 181 (193)
Q Consensus 137 r~~~y~~~~~~i~~~~~~~~~~~iDt~~~~~~~~~~~i~~~~~~~ 181 (193)
|.+.|+.+.. +++...++++++|||+.++++++++.|++.++..
T Consensus 156 R~~~y~~~~~-~~~~~~~~~dl~Idt~~l~~eevv~~I~~~i~~~ 199 (201)
T 3fdi_A 156 RKVYHNFYCE-SKWGDSRTYDICIKIGKVDVDTATDMIIKYIDSR 199 (201)
T ss_dssp HHHHHHHHCS-SCTTBGGGCSEEEEESSSCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhC-CCCCCcccCCEEEECCCCCHHHHHHHHHHHHHHh
Confidence 8888886422 2233566778889999999999999999988753
No 11
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=99.78 E-value=8.7e-19 Score=136.53 Aligned_cols=162 Identities=23% Similarity=0.191 Sum_probs=106.0
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHHHHHh-CCCCHHHHHHHhcch-------------------------------h
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQSV-DGTSVAEIFKLYGEG-------------------------------F 48 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~~~~~-~g~~~~~~~~~~~~~-------------------------------~ 48 (193)
++||||||+|+.||++||++++|.|.+..... .|.+... +...++. .
T Consensus 22 ~~gsGk~~i~~~la~~lg~~~~d~~~~~~~a~~~g~~~~~-~~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (223)
T 3hdt_A 22 EYGSGGRIVGKKLAEELGIHFYDDDILKLASEKSAVGEQF-FRLADEKAGNNLLYRLGGGRKIDLHSKPSPNDKLTSPEN 100 (223)
T ss_dssp CTTSCHHHHHHHHHHHHTCEEECHHHHHHHHHCC-------------------------------------------HHH
T ss_pred CCCCCHHHHHHHHHHHcCCcEEcHHHHHHHHHHcCCCHHH-HHHHHhhccccHHHHHhcccccccccccccccccccHHH
Confidence 58999999999999999999999665443221 2433221 1111110 0
Q ss_pred hHHHHHHHHHHHhccCCcEEE-eCCceeeC--HhhHHhccCCeEEEEECCHHHHHHHHhccCCCCCCccccCCCCChhHH
Q 029455 49 FREKETEVLQKLSLMRQLVVS-TGGGAVTR--PINWRYMQKGISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTE 125 (193)
Q Consensus 49 ~~~~e~~~~~~l~~~~~~vi~-~g~~~v~~--~~~~~~l~~~~vV~L~~~~~~~~~Rl~~~~~~~R~~~~~~~~~~~~~~ 125 (193)
....+..++.++...+++||. .++++++. +++ ++.++|||++|++++.+|+.++ ..++. ++
T Consensus 101 ~f~~~~~~i~~la~~~~~Vi~Grggg~vl~~~~~~----~~~~~VfL~A~~e~r~~Ri~~~--~~~~~----------~~ 164 (223)
T 3hdt_A 101 LFKFQSEVMRELAESEPCIFVGRAAGYVLDQDEDI----ERLIRIFVYTDKVKKVQRVMEV--DCIDE----------ER 164 (223)
T ss_dssp HHHHHHHHHHHHHHHSCEEEESTTHHHHHHHCTTC----CEEEEEEEECCHHHHHHHHHHH--HTCCH----------HH
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCcchhcccccCC----CCeEEEEEECCHHHHHHHHHHh--cCCCH----------HH
Confidence 112344566677766778887 44455552 221 1258999999999999999864 12332 14
Q ss_pred HHHHHHHHHHHHHHHHhhccceeechhhhhhcccccCCCCCHHHHHHHHHHHHHh
Q 029455 126 ALNRLSTLWEERGEAYANANARVSLENIAVKLGHKDVSSLTPVTIAIEALEQIEG 180 (193)
Q Consensus 126 ~~~~~~~~~~~r~~~y~~~~~~i~~~~~~~~~~~iDt~~~~~~~~~~~i~~~~~~ 180 (193)
+.+.+.+...+|.+.|....- ++..+.+.++++|||+.++++++++.|++.++.
T Consensus 165 a~~~I~~~d~~R~~~Y~~ytg-~~~~~~~~~dl~IdT~~l~~eevv~~I~~~i~~ 218 (223)
T 3hdt_A 165 AKRRIKKIEKERKEYYKYFTG-SEWHSMKNYDLPINTTKLTLEETAELIKAYIRL 218 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHHHS-SCTTCGGGCSEEEECTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcC-CCCCCcccCeEEEECCCCCHHHHHHHHHHHHHH
Confidence 577888888899999985211 123356667778899999999999999999874
No 12
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=99.70 E-value=4.7e-16 Score=117.56 Aligned_cols=162 Identities=16% Similarity=0.201 Sum_probs=95.7
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHHHHHh-CC----CCHHHHHHHhcchhhHHHHHHHH----HHHhccCCcEEEeC
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQSV-DG----TSVAEIFKLYGEGFFREKETEVL----QKLSLMRQLVVSTG 71 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~~~~~-~g----~~~~~~~~~~~~~~~~~~e~~~~----~~l~~~~~~vi~~g 71 (193)
+|||||||+|+.|++.+|+++++.|.+++... .| ..+.+++. .|...+.......+ ......+..+|..|
T Consensus 17 ~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~i~~~~~~~~~vi~d~ 95 (196)
T 2c95_A 17 GPGSGKGTQCEKIVQKYGYTHLSTGDLLRSEVSSGSARGKKLSEIME-KGQLVPLETVLDMLRDAMVAKVNTSKGFLIDG 95 (196)
T ss_dssp CTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHH-TTCCCCHHHHHHHHHHHHHHHTTTCSCEEEES
T ss_pred CCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHcCChHHHHHHHHHH-cCCcCCHHHHHHHHHHHHHhccccCCcEEEeC
Confidence 69999999999999999999999999887642 12 22333332 24333332222222 22222334455544
Q ss_pred CceeeCHhhHHh----cc-CCeEEEEECCHHHHHHHHhccCCCCCCccccCCCCChhHHHHHHHHHHHHHHHHH---Hhh
Q 029455 72 GGAVTRPINWRY----MQ-KGISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEA---YAN 143 (193)
Q Consensus 72 ~~~v~~~~~~~~----l~-~~~vV~L~~~~~~~~~Rl~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~r~~~---y~~ 143 (193)
++........ +. .+.+|||++|++++.+|+..|.. .++.... ..+...+.+...+..+.+. |..
T Consensus 96 --~~~~~~~~~~~~~~~~~~~~vi~l~~~~e~~~~R~~~R~~-~~~~~~~-----~~~~~~~r~~~~~~~~~~~~~~~~~ 167 (196)
T 2c95_A 96 --YPREVQQGEEFERRIGQPTLLLYVDAGPETMTQRLLKRGE-TSGRVDD-----NEETIKKRLETYYKATEPVIAFYEK 167 (196)
T ss_dssp --CCCSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHHHT-SSSCGGG-----SHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred --CCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHccCC-cCCCCCC-----CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2222222221 23 37999999999999999987521 1221111 1112344555555555554 444
Q ss_pred ccceeechhhhhhcccccCCCCCHHHHHHHHHHHHHhhh
Q 029455 144 ANARVSLENIAVKLGHKDVSSLTPVTIAIEALEQIEGFL 182 (193)
Q Consensus 144 ~~~~i~~~~~~~~~~~iDt~~~~~~~~~~~i~~~~~~~~ 182 (193)
++.++ +||++ .+++++++.|.+.+...+
T Consensus 168 ~~~~~----------~Id~~-~~~e~v~~~i~~~l~~~~ 195 (196)
T 2c95_A 168 RGIVR----------KVNAE-GSVDSVFSQVCTHLDALL 195 (196)
T ss_dssp HTCEE----------EEECC-SCHHHHHHHHHHHHHHHC
T ss_pred cCcEE----------EEECC-CCHHHHHHHHHHHHHHhc
Confidence 45433 36864 899999999999987654
No 13
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=99.70 E-value=6e-16 Score=114.35 Aligned_cols=150 Identities=18% Similarity=0.178 Sum_probs=88.8
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHHHHHh--CCC---CH----HHHHHHhcchhhHHHHHHHHHHHh-ccCCcEEEe
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQSV--DGT---SV----AEIFKLYGEGFFREKETEVLQKLS-LMRQLVVST 70 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~~~~~--~g~---~~----~~~~~~~~~~~~~~~e~~~~~~l~-~~~~~vi~~ 70 (193)
||||||||+|+.| +.+|+++++.|++++... .+. .. ..++...+...+.... ...+. ..+..+|.+
T Consensus 9 ~~GsGKsT~a~~L-~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~vi~d 84 (179)
T 3lw7_A 9 MPGSGKSEFAKLL-KERGAKVIVMSDVVRKRYSIEAKPGERLMDFAKRLREIYGDGVVARLC---VEELGTSNHDLVVFD 84 (179)
T ss_dssp CTTSCHHHHHHHH-HHTTCEEEEHHHHHHHHHHHHC---CCHHHHHHHHHHHHCTTHHHHHH---HHHHCSCCCSCEEEE
T ss_pred CCCCCHHHHHHHH-HHCCCcEEEHhHHHHHHHHhcCCChhHHHHHHHHHHhhCCHHHHHHHH---HHHHHhcCCCeEEEe
Confidence 6999999999999 899999999999887654 121 11 1122223333333322 22231 234556666
Q ss_pred CCceeeCHhhHHhcc-----CCeEEEEECCHHHHHHHHhccCCCCCCccccCCCCChhHHHHHHHHHHHHH--H--HHHH
Q 029455 71 GGGAVTRPINWRYMQ-----KGISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEE--R--GEAY 141 (193)
Q Consensus 71 g~~~v~~~~~~~~l~-----~~~vV~L~~~~~~~~~Rl~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~--r--~~~y 141 (193)
| + .....+..+. ...+|||++|++++.+|+..| .|+.... . .+.+.+.+.. + ...|
T Consensus 85 g--~-~~~~~~~~l~~~~~~~~~~i~l~~~~~~~~~R~~~R---~~~~~~~-----~----~~~~~~r~~~~~~~~~~~~ 149 (179)
T 3lw7_A 85 G--V-RSLAEVEEFKRLLGDSVYIVAVHSPPKIRYKRMIER---LRSDDSK-----E----ISELIRRDREELKLGIGEV 149 (179)
T ss_dssp C--C-CCHHHHHHHHHHHCSCEEEEEEECCHHHHHHHHHTC---C----CC-----C----HHHHHHHHHHHHHHTHHHH
T ss_pred C--C-CCHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhc---cCCCCcc-----h----HHHHHHHHHhhhccChHhH
Confidence 6 2 4444444332 248999999999999999974 2431111 1 1222222211 1 1123
Q ss_pred -hhccceeechhhhhhcccccCCCCCHHHHHHHHHHHHHhhh
Q 029455 142 -ANANARVSLENIAVKLGHKDVSSLTPVTIAIEALEQIEGFL 182 (193)
Q Consensus 142 -~~~~~~i~~~~~~~~~~~iDt~~~~~~~~~~~i~~~~~~~~ 182 (193)
..+|.+| |++. +++++++.|.+.+..++
T Consensus 150 ~~~ad~vI------------d~~~-~~~~~~~~i~~~l~~~l 178 (179)
T 3lw7_A 150 IAMADYII------------TNDS-NYEEFKRRCEEVTDRVL 178 (179)
T ss_dssp HHTCSEEE------------ECCS-CHHHHHHHHHHHHHHHC
T ss_pred HHhCCEEE------------ECCC-CHHHHHHHHHHHHHHHh
Confidence 3367765 6654 99999999999988765
No 14
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=99.69 E-value=7.4e-16 Score=115.94 Aligned_cols=159 Identities=17% Similarity=0.181 Sum_probs=94.5
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHHHHHh-CCCC----HHHHHHHhcchhhHHHHHHHHHHHhc--cCCcEEEeCCc
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQSV-DGTS----VAEIFKLYGEGFFREKETEVLQKLSL--MRQLVVSTGGG 73 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~~~~~-~g~~----~~~~~~~~~~~~~~~~e~~~~~~l~~--~~~~vi~~g~~ 73 (193)
+|||||||+|+.|++.+|+++++.|++++... .|.. +.+++. .|...+.......+..... .+..+|..|
T Consensus 14 ~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~-~g~~~~~~~~~~~l~~~i~~~~~~~vi~d~-- 90 (194)
T 1qf9_A 14 GPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIK-NGEIVPSIVTVKLLKNAIDANQGKNFLVDG-- 90 (194)
T ss_dssp STTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCTTHHHHHHHHH-TTCCCCHHHHHHHHHHHHHTSTTCCEEEET--
T ss_pred CCCCCHHHHHHHHHHHhCCeEeeHHHHHHHHHhcCCHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHhcCCCCEEEeC--
Confidence 69999999999999999999999999877643 2322 233332 2332233333333333321 234455544
Q ss_pred eeeCHhhHHhc----c----CCeEEEEECCHHHHHHHHhccCC-CCCCccccCCCCChhHHHHHHHHHHHHHHHHH---H
Q 029455 74 AVTRPINWRYM----Q----KGISVWLDVPLEALAQRIAAVGT-DSRPLLHQCESGDAYTEALNRLSTLWEERGEA---Y 141 (193)
Q Consensus 74 ~v~~~~~~~~l----~----~~~vV~L~~~~~~~~~Rl~~~~~-~~R~~~~~~~~~~~~~~~~~~~~~~~~~r~~~---y 141 (193)
++........+ . .+++|||+||++++.+|+..|.. ..|+ .+..+...+.+...+..+.+. |
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~r~-------~~~~~~~~~ri~~~~~~~~~~~~~~ 163 (194)
T 1qf9_A 91 FPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQRLLKRGESSGRS-------DDNIESIKKRFNTFNVQTKLVIDHY 163 (194)
T ss_dssp CCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHTTSCCT-------TCSHHHHHHHHHHHHHTHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHhccCCCCEEEEEECCHHHHHHHHHhccccCCCC-------CCCHHHHHHHHHHHHHhHHHHHHHH
Confidence 33333322222 2 26899999999999999987521 1121 111113344455555444453 3
Q ss_pred hhccceeechhhhhhcccccCCCCCHHHHHHHHHHHHHh
Q 029455 142 ANANARVSLENIAVKLGHKDVSSLTPVTIAIEALEQIEG 180 (193)
Q Consensus 142 ~~~~~~i~~~~~~~~~~~iDt~~~~~~~~~~~i~~~~~~ 180 (193)
..++.++ +||++ .+++++++.|.+.+.+
T Consensus 164 ~~~~~~~----------~id~~-~~~~~~~~~i~~~l~~ 191 (194)
T 1qf9_A 164 NKFDKVK----------IIPAN-RDVNEVYNDVENLFKS 191 (194)
T ss_dssp HHTTCEE----------EEECS-SCHHHHHHHHHHHHHH
T ss_pred HhCCCEE----------EEECC-CCHHHHHHHHHHHHHH
Confidence 3355322 36875 8999999999988865
No 15
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=99.67 E-value=1.3e-15 Score=117.75 Aligned_cols=161 Identities=14% Similarity=0.193 Sum_probs=94.0
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHHHHHhC-----CCCHHHHHHHhcchhhHHHHHHHHHHHhc---cCCcEEEeCC
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVD-----GTSVAEIFKLYGEGFFREKETEVLQKLSL---MRQLVVSTGG 72 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~~~~~~-----g~~~~~~~~~~~~~~~~~~e~~~~~~l~~---~~~~vi~~g~ 72 (193)
+|||||||+|+.|++.+|++++++|++++.... |..+.+++.. |...+.+....++..... .+..+|..|
T Consensus 13 ~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~~t~~g~~i~~~~~~-g~~~~~~~~~~~i~~~l~~~~~~~~~i~dg- 90 (217)
T 3be4_A 13 APGSGKGTQCEFIKKEYGLAHLSTGDMLREAIKNGTKIGLEAKSIIES-GNFVGDEIVLGLVKEKFDLGVCVNGFVLDG- 90 (217)
T ss_dssp CTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTC--CCHHHHHHHHH-TCCCCHHHHHHHHHHHHHTTTTTTCEEEES-
T ss_pred CCCCCHHHHHHHHHHHhCceEEehhHHHHHHHHcCCHHHHHHHHHHHC-CCcCCHHHHHHHHHHHHhccccCCCEEEeC-
Confidence 699999999999999999999999999876531 3345555543 444445444444433222 123344444
Q ss_pred ceeeC---HhhHH-hcc-----CCeEEEEECCHHHHHHHHhccCCC-----------------------CCCccccCCCC
Q 029455 73 GAVTR---PINWR-YMQ-----KGISVWLDVPLEALAQRIAAVGTD-----------------------SRPLLHQCESG 120 (193)
Q Consensus 73 ~~v~~---~~~~~-~l~-----~~~vV~L~~~~~~~~~Rl~~~~~~-----------------------~R~~~~~~~~~ 120 (193)
++.. ...+. .+. .+.+|||++|++++.+|+..|... .+++... +.
T Consensus 91 -~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~~--~d 167 (217)
T 3be4_A 91 -FPRTIPQAEGLAKILSEIGDSLTSVIYFEIDDSEIIERISGRCTHPASGRIYHVKYNPPKQPGIDDVTGEPLVWR--DD 167 (217)
T ss_dssp -CCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTEEECTTTCCEEETTTBCCSSTTBCTTTCCBCBCC--GG
T ss_pred -CCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCCCccccCccccccCCCCccccccccccccccC--CC
Confidence 2222 11122 121 268999999999999999875211 1233222 12
Q ss_pred ChhHHHHHHHHHHHHHHHHH---HhhccceeechhhhhhcccccCCCCCHHHHHHHHHHH
Q 029455 121 DAYTEALNRLSTLWEERGEA---YANANARVSLENIAVKLGHKDVSSLTPVTIAIEALEQ 177 (193)
Q Consensus 121 ~~~~~~~~~~~~~~~~r~~~---y~~~~~~i~~~~~~~~~~~iDt~~~~~~~~~~~i~~~ 177 (193)
+..+...+.+......+.+. |...+.++ .||+ ..+++++++.|.+.
T Consensus 168 d~~e~v~~r~~~~~~~~~~l~~~y~~~~~~~----------~id~-~~~~~~v~~~i~~~ 216 (217)
T 3be4_A 168 DNAEAVKVRLDVFHKQTAPLVKFYEDLGILK----------RVNA-KLPPKEVTEQIKKI 216 (217)
T ss_dssp GSHHHHHHHHHHHHHHTTHHHHHHHTTTCEE----------EEET-TSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhCCCEE----------EEEC-CCCHHHHHHHHHhh
Confidence 22222233444443444443 55433333 3686 58999999998765
No 16
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=99.67 E-value=2.2e-15 Score=111.45 Aligned_cols=145 Identities=15% Similarity=0.140 Sum_probs=93.5
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHHHHHhCCCCHHHHHHHhcchhhHHHHHHHHHHHhccCCcEEEeCC---c----
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFREKETEVLQKLSLMRQLVVSTGG---G---- 73 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~~~~~~g~~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~vi~~g~---~---- 73 (193)
+|||||||+++.|++++|+++++.|.+..... ....++. ....+.. +..++.... +
T Consensus 9 ~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~---~~~~~~~-------------~~~~l~~-~~~vi~dr~~~~~~v~~ 71 (173)
T 3kb2_A 9 PDCCFKSTVAAKLSKELKYPIIKGSSFELAKS---GNEKLFE-------------HFNKLAD-EDNVIIDRFVYSNLVYA 71 (173)
T ss_dssp SSSSSHHHHHHHHHHHHCCCEEECCCHHHHTT---CHHHHHH-------------HHHHHTT-CCSEEEESCHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHhCCeeecCcccccchh---HHHHHHH-------------HHHHHHh-CCCeEEeeeecchHHHH
Confidence 69999999999999999999999998765432 1222221 0111222 233332210 0
Q ss_pred ------eeeCHhhHHhc-----cCCeEEEEECCHHHHHHHHhccCCCCCCccccCCCCChhHHHHHHHHHHHHHHHHHHh
Q 029455 74 ------AVTRPINWRYM-----QKGISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYA 142 (193)
Q Consensus 74 ------~v~~~~~~~~l-----~~~~vV~L~~~~~~~~~Rl~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~r~~~y~ 142 (193)
..+.......+ ..+.+|||++|++++.+|+..| .|+.... +..+.+.+.+.++.+.|.
T Consensus 72 ~~~~~~~~~~~~~~~~l~~~~~~~~~~i~l~~~~e~~~~R~~~r---~r~~~~~--------~~~~~~~~~~~~~~~~~~ 140 (173)
T 3kb2_A 72 KKFKDYSILTERQLRFIEDKIKAKAKVVYLHADPSVIKKRLRVR---GDEYIEG--------KDIDSILELYREVMSNAG 140 (173)
T ss_dssp TTBTTCCCCCHHHHHHHHHHHTTTEEEEEEECCHHHHHHHHHHH---SCSCCCH--------HHHHHHHHHHHHHHHTCS
T ss_pred HHHHHhhHhhHHHHHHHhccCCCCCEEEEEeCCHHHHHHHHHhc---CCcchhh--------hHHHHHHHHHHHHHhhcC
Confidence 01122222222 2368999999999999999875 3554322 235666677776666665
Q ss_pred hccceeechhhhhhcccccCCCCCHHHHHHHHHHHHHhhhccc
Q 029455 143 NANARVSLENIAVKLGHKDVSSLTPVTIAIEALEQIEGFLKEE 185 (193)
Q Consensus 143 ~~~~~i~~~~~~~~~~~iDt~~~~~~~~~~~i~~~~~~~~~~~ 185 (193)
.++.+ ||+++.+++++++.|.+.+++.....
T Consensus 141 ~~~~~------------id~~~~~~~ev~~~I~~~~~~~~~~~ 171 (173)
T 3kb2_A 141 LHTYS------------WDTGQWSSDEIAKDIIFLVELEHHHH 171 (173)
T ss_dssp SCEEE------------EETTTSCHHHHHHHHHHHHHHGGGCC
T ss_pred CCEEE------------EECCCCCHHHHHHHHHHHHhCCCccc
Confidence 44444 58877899999999999999877654
No 17
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=99.66 E-value=3.7e-15 Score=112.86 Aligned_cols=162 Identities=14% Similarity=0.180 Sum_probs=92.7
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHHHHHh-CCC----CHHHHHHHhcchhhHHHHHHHHH----HHhccCCcEEEeC
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQSV-DGT----SVAEIFKLYGEGFFREKETEVLQ----KLSLMRQLVVSTG 71 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~~~~~-~g~----~~~~~~~~~~~~~~~~~e~~~~~----~l~~~~~~vi~~g 71 (193)
+|||||||+|+.|++.+|+++++.|++++... .|. .+.+++. .|...+.......+. .....+..+|..|
T Consensus 20 ~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~i~~~~~~~~~vi~dg 98 (199)
T 2bwj_A 20 GPGSGKGTQCEKLVEKYGFTHLSTGELLREELASESERSKLIRDIME-RGDLVPSGIVLELLKEAMVASLGDTRGFLIDG 98 (199)
T ss_dssp CTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHH-TTCCCCHHHHHHHHHHHHHHHTTSCSCEEEET
T ss_pred CCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHhCCHHHHHHHHHHH-cCCcCCHHHHHHHHHHHHhcccccCccEEEeC
Confidence 69999999999999999999999999876543 122 2233332 233222222122222 2222344555554
Q ss_pred CceeeCHhhHHh----c-cCCeEEEEECCHHHHHHHHhccCCCCCCccccCCCCChhHHHHHHHHHHHHHHHH---HHhh
Q 029455 72 GGAVTRPINWRY----M-QKGISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGE---AYAN 143 (193)
Q Consensus 72 ~~~v~~~~~~~~----l-~~~~vV~L~~~~~~~~~Rl~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~r~~---~y~~ 143 (193)
++........ + ..+.+|||+||++++.+|+..|.. .++.. .+..+...+++...+..+.+ .|..
T Consensus 99 --~~~~~~~~~~l~~~~~~~~~~i~l~~~~~~~~~R~~~R~~-~~~~~-----~~~~~~~~~r~~~~~~~~~~~~~~~~~ 170 (199)
T 2bwj_A 99 --YPREVKQGEEFGRRIGDPQLVICMDCSADTMTNRLLQMSR-SSLPV-----DDTTKTIAKRLEAYYRASIPVIAYYET 170 (199)
T ss_dssp --CCSSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHTCC-CCSCH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --CCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHcCCC-CCCCC-----CCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333332222 2 137899999999999999987521 11111 11111223334344444443 3544
Q ss_pred ccceeechhhhhhcccccCCCCCHHHHHHHHHHHHHhhh
Q 029455 144 ANARVSLENIAVKLGHKDVSSLTPVTIAIEALEQIEGFL 182 (193)
Q Consensus 144 ~~~~i~~~~~~~~~~~iDt~~~~~~~~~~~i~~~~~~~~ 182 (193)
++.++ +||+ +.+++++++.|.+.+...+
T Consensus 171 ~~~~~----------~id~-~~~~e~v~~~i~~~l~~~~ 198 (199)
T 2bwj_A 171 KTQLH----------KINA-EGTPEDVFLQLCTAIDSIF 198 (199)
T ss_dssp HSEEE----------EEET-TSCHHHHHHHHHHHHHHHC
T ss_pred cCCEE----------EEEC-CCCHHHHHHHHHHHHHHhc
Confidence 34322 3685 5899999999999887653
No 18
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=99.65 E-value=3e-15 Score=111.45 Aligned_cols=144 Identities=15% Similarity=0.187 Sum_probs=86.6
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHHH-----H-HhCCCCHHHHHHHhcchhhHHHHHHHHHHHhc-cCCcEEEeCCc
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIE-----Q-SVDGTSVAEIFKLYGEGFFREKETEVLQKLSL-MRQLVVSTGGG 73 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~~-----~-~~~g~~~~~~~~~~~~~~~~~~e~~~~~~l~~-~~~~vi~~g~~ 73 (193)
+|||||||+++.|++.+|+.+++.|.+.. . .. |..+.+ ..+...++.++. ++..+.. ...+|++++.
T Consensus 16 ~~GsGKSTl~~~l~~~~g~~~i~~d~~~~~~~~~~~~~-g~~~~~---~~~~~~~~~~~~-~~~~~~~~~~~~vi~~~~- 89 (175)
T 1knq_A 16 VSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMAS-GEPLND---DDRKPWLQALND-AAFAMQRTNKVSLIVCSA- 89 (175)
T ss_dssp STTSCHHHHHHHHHHHHTCEEEEGGGGCCHHHHHHHHT-TCCCCH---HHHHHHHHHHHH-HHHHHHHHCSEEEEECCC-
T ss_pred CCCCCHHHHHHHHHHhhCcEEEeCccccchHHHHHhhc-CcCCCc---cccccHHHHHHH-HHHHHHhcCCcEEEEeCc-
Confidence 69999999999999999999999998742 1 23 544322 112233444433 3333332 2345665542
Q ss_pred eeeCHhhHHhccC---C-eEEEEECCHHHHHHHHhccCCCCCCccccCCCCChhHHHHHHHHHHHHHHHHH-Hhh-ccce
Q 029455 74 AVTRPINWRYMQK---G-ISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEA-YAN-ANAR 147 (193)
Q Consensus 74 ~v~~~~~~~~l~~---~-~vV~L~~~~~~~~~Rl~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~r~~~-y~~-~~~~ 147 (193)
+....+..++. + .+|||+||++++.+|+..|. .++ .. ...+...+....+. |.. ++.+
T Consensus 90 --~~~~~~~~l~~~~~~~~vv~l~~~~e~~~~R~~~R~--~~~--~~----------~~~~~~~~~~~~~~~~~~~~~~~ 153 (175)
T 1knq_A 90 --LKKHYRDLLREGNPNLSFIYLKGDFDVIESRLKARK--GHF--FK----------TQMLVTQFETLQEPGADETDVLV 153 (175)
T ss_dssp --CSHHHHHHHHTTCTTEEEEEEECCHHHHHHHHHTST--TCC--CC----------HHHHHHHHHHCCCCCTTCTTEEE
T ss_pred --hHHHHHHHHHhcCCCEEEEEEECCHHHHHHHHHhcc--CCC--Cc----------hHHHHHHHHhhhCcccCCCCeEE
Confidence 34555555542 3 79999999999999998742 111 01 12233333222222 322 3343
Q ss_pred eechhhhhhcccccCCCCCHHHHHHHHHHHHH
Q 029455 148 VSLENIAVKLGHKDVSSLTPVTIAIEALEQIE 179 (193)
Q Consensus 148 i~~~~~~~~~~~iDt~~~~~~~~~~~i~~~~~ 179 (193)
|||+ .+++++++.|.+.+.
T Consensus 154 ------------Id~~-~~~~~~~~~i~~~l~ 172 (175)
T 1knq_A 154 ------------VDID-QPLEGVVASTIEVIK 172 (175)
T ss_dssp ------------EECS-SCHHHHHHHHHHHHH
T ss_pred ------------EeCC-CCHHHHHHHHHHHHh
Confidence 6876 799999999998875
No 19
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=99.64 E-value=3e-15 Score=112.38 Aligned_cols=155 Identities=19% Similarity=0.184 Sum_probs=90.4
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHHHHHh-CC----CCHHHHHHHhcchhhHHHHHHHHHHHhccCCcEEEeCCcee
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQSV-DG----TSVAEIFKLYGEGFFREKETEVLQKLSLMRQLVVSTGGGAV 75 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~~~~~-~g----~~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~vi~~g~~~v 75 (193)
+|||||||+|+.|++.+|++++++|++++... .| ..+.+++. .|...+.......+...... + +|..| ++
T Consensus 12 ~~GsGKST~~~~La~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~l~~-~-~i~dg--~~ 86 (186)
T 3cm0_A 12 PPGAGKGTQASRLAQELGFKKLSTGDILRDHVARGTPLGERVRPIME-RGDLVPDDLILELIREELAE-R-VIFDG--FP 86 (186)
T ss_dssp CTTSCHHHHHHHHHHHHTCEEECHHHHHHHHHHTTCHHHHHHHHHHH-TTCCCCHHHHHHHHHHHCCS-E-EEEES--CC
T ss_pred CCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHHcCChHHHHHHHHHH-cCCcCCHHHHHHHHHHHhcC-C-EEEeC--CC
Confidence 69999999999999999999999998887642 12 22334443 23333444434444444433 2 44444 23
Q ss_pred eCHhhHH----hcc-----CCeEEEEECCHHHHHHHHhccCC-CCCCccccCCCCChhHHHHHHHHHHHHHHHHH---Hh
Q 029455 76 TRPINWR----YMQ-----KGISVWLDVPLEALAQRIAAVGT-DSRPLLHQCESGDAYTEALNRLSTLWEERGEA---YA 142 (193)
Q Consensus 76 ~~~~~~~----~l~-----~~~vV~L~~~~~~~~~Rl~~~~~-~~R~~~~~~~~~~~~~~~~~~~~~~~~~r~~~---y~ 142 (193)
....... .+. .+.+|||++|++++.+|+..|.. ..|+... .+...+++...+..+.+. |+
T Consensus 87 ~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~r~~~~-------~~~~~~r~~~~~~~~~~l~~~~~ 159 (186)
T 3cm0_A 87 RTLAQAEALDRLLSETGTRLLGVVLVEVPEEELVRRILRRAELEGRSDDN-------EETVRRRLEVYREKTEPLVGYYE 159 (186)
T ss_dssp CSHHHHHHHHHHHHHTTEEEEEEEEEECCHHHHHHHHHHHHHHHTCSSCC-------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhccccCCCCCCC-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222111 122 25899999999999999987420 0232111 112234444444443443 33
Q ss_pred hccceeechhhhhhcccccCCCCCHHHHHHHHHHHH
Q 029455 143 NANARVSLENIAVKLGHKDVSSLTPVTIAIEALEQI 178 (193)
Q Consensus 143 ~~~~~i~~~~~~~~~~~iDt~~~~~~~~~~~i~~~~ 178 (193)
.++.++ +||+ +.+++++++.|.+.+
T Consensus 160 ~~~~~~----------~id~-~~~~~~v~~~i~~~l 184 (186)
T 3cm0_A 160 ARGVLK----------RVDG-LGTPDEVYARIRAAL 184 (186)
T ss_dssp HTTCEE----------EEEC-CSCHHHHHHHHHHHH
T ss_pred hcCcEE----------EEEC-CCCHHHHHHHHHHHh
Confidence 333222 3686 489999999998776
No 20
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=99.64 E-value=2.8e-15 Score=114.36 Aligned_cols=148 Identities=14% Similarity=0.141 Sum_probs=91.6
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHHHH-----HhCCCCHHHHHHHhcchhhHHHHHHHHHHHhccCCcEEEeCCcee
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQ-----SVDGTSVAEIFKLYGEGFFREKETEVLQKLSLMRQLVVSTGGGAV 75 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~~~-----~~~g~~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~vi~~g~~~v 75 (193)
+|||||||+++.|++.+|..+++.|.+... ...|....+. .....+...+..+...+......|+.++ .
T Consensus 37 ~~GsGKSTl~~~L~~~~g~~~i~~d~~~~~~~~~~~~~g~~~~~~---~~~~~~~~~~~~~~~~~~~g~~viid~~---~ 110 (200)
T 4eun_A 37 VSGSGKTTIAHGVADETGLEFAEADAFHSPENIATMQRGIPLTDE---DRWPWLRSLAEWMDARADAGVSTIITCS---A 110 (200)
T ss_dssp CTTSCHHHHHHHHHHHHCCEEEEGGGGSCHHHHHHHHTTCCCCHH---HHHHHHHHHHHHHHHHHHTTCCEEEEEC---C
T ss_pred CCCCCHHHHHHHHHHhhCCeEEcccccccHHHHHHHhcCCCCCCc---ccccHHHHHHHHHHHHHhcCCCEEEEch---h
Confidence 699999999999999999999999987421 1114332221 1112233333333333333345566553 3
Q ss_pred eCHhhHHhccC----CeEEEEECCHHHHHHHHhccCCCCCCccccCCCCChhHHHHHHHHHHHHHHHHHHhh-ccceeec
Q 029455 76 TRPINWRYMQK----GISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYAN-ANARVSL 150 (193)
Q Consensus 76 ~~~~~~~~l~~----~~vV~L~~~~~~~~~Rl~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~r~~~y~~-~~~~i~~ 150 (193)
+....++.+.. ..+|||+||++++.+|+..|. .++. . .+.+...+..+.+.|.. ++.+
T Consensus 111 ~~~~~~~~l~~~~~~~~vv~l~~~~e~l~~Rl~~R~--~~~~--~----------~~~l~~~~~~~~~~~~~~~~~~--- 173 (200)
T 4eun_A 111 LKRTYRDVLREGPPSVDFLHLDGPAEVIKGRMSKRE--GHFM--P----------ASLLQSQLATLEALEPDESGIV--- 173 (200)
T ss_dssp CCHHHHHHHTTSSSCCEEEEEECCHHHHHHHHTTCS--CCSS--C----------GGGHHHHHHHCCCCCTTSCEEE---
T ss_pred hhHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHhcc--cCCC--C----------HHHHHHHHHHhCCCCCCCCeEE---
Confidence 34555554442 478999999999999998742 1221 1 13355555555555654 4444
Q ss_pred hhhhhhcccccCCCCCHHHHHHHHHHHHHhh
Q 029455 151 ENIAVKLGHKDVSSLTPVTIAIEALEQIEGF 181 (193)
Q Consensus 151 ~~~~~~~~~iDt~~~~~~~~~~~i~~~~~~~ 181 (193)
|||+ .+++++++.|.+.+...
T Consensus 174 ---------Id~~-~~~~e~~~~I~~~l~~~ 194 (200)
T 4eun_A 174 ---------LDLR-QPPEQLIERALTWLDIA 194 (200)
T ss_dssp ---------EETT-SCHHHHHHHHHHHHCCC
T ss_pred ---------EECC-CCHHHHHHHHHHHHHhc
Confidence 5875 59999999999988754
No 21
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=99.64 E-value=4.6e-15 Score=111.71 Aligned_cols=158 Identities=16% Similarity=0.190 Sum_probs=91.4
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHHHHHh-C-CCC----HHHHHHHhcchhhHHHHHHHH----HHH-h--ccCCcE
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQSV-D-GTS----VAEIFKLYGEGFFREKETEVL----QKL-S--LMRQLV 67 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~~~~~-~-g~~----~~~~~~~~~~~~~~~~e~~~~----~~l-~--~~~~~v 67 (193)
+|||||||+|+.|++.+|+++++.|++++... + +.. +.+++. .|...+......++ ... . ..+..+
T Consensus 11 ~~GsGKsT~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~v 89 (196)
T 1tev_A 11 GPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIK-EGKIVPVEITISLLKREMDQTMAANAQKNKF 89 (196)
T ss_dssp CTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHCTTSTTHHHHHHHHH-TTCCCCHHHHHHHHHHHHHHHHHHCTTCCEE
T ss_pred CCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHhccCChHHHHHHHHHH-CCCcCCHHHHHHHHHHHHHhhhccccCCCeE
Confidence 69999999999999999999999999987643 1 111 223332 33332222221111 111 1 123445
Q ss_pred EEeCCceeeCHhhHH----hcc----CCeEEEEECCHHHHHHHHhccCC-CCCCccccCCCCChhHHHHHHHHHHHHHHH
Q 029455 68 VSTGGGAVTRPINWR----YMQ----KGISVWLDVPLEALAQRIAAVGT-DSRPLLHQCESGDAYTEALNRLSTLWEERG 138 (193)
Q Consensus 68 i~~g~~~v~~~~~~~----~l~----~~~vV~L~~~~~~~~~Rl~~~~~-~~R~~~~~~~~~~~~~~~~~~~~~~~~~r~ 138 (193)
|..| ++....... .+. .+.+|||++|++++.+|+.+|.. ..|+... .+.....+...+..+.
T Consensus 90 i~dg--~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~~~~r~~~~-------~~~~~~~~~~~~~~~~ 160 (196)
T 1tev_A 90 LIDG--FPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGKSSGRSDDN-------RESLEKRIQTYLQSTK 160 (196)
T ss_dssp EEES--CCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHHTSSCCSCC-------HHHHHHHHHHHHHHHH
T ss_pred EEeC--CCCCHHHHHHHHHHhcccCCCCEEEEEECCHHHHHHHHHcccccCCCCCCC-------HHHHHHHHHHHHHhHH
Confidence 5444 344333221 111 25799999999999999987521 1233211 1122334444444444
Q ss_pred H---HHhh-ccceeechhhhhhcccccCCCCCHHHHHHHHHHHHHh
Q 029455 139 E---AYAN-ANARVSLENIAVKLGHKDVSSLTPVTIAIEALEQIEG 180 (193)
Q Consensus 139 ~---~y~~-~~~~i~~~~~~~~~~~iDt~~~~~~~~~~~i~~~~~~ 180 (193)
+ .|.. ++.+ +||++ .+++++++.|.+.+.+
T Consensus 161 ~~~~~y~~~~~~~-----------~id~~-~~~~~v~~~i~~~l~~ 194 (196)
T 1tev_A 161 PIIDLYEEMGKVK-----------KIDAS-KSVDEVFDEVVQIFDK 194 (196)
T ss_dssp HHHHHHHHTTCEE-----------EEETT-SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCEE-----------EEECC-CCHHHHHHHHHHHHHh
Confidence 4 3554 3432 26876 9999999999988864
No 22
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=99.64 E-value=5.2e-15 Score=114.29 Aligned_cols=164 Identities=16% Similarity=0.172 Sum_probs=92.8
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHHHHHh-CC----CCHHHHHHHhcchhhHHHHHHHHHHHhc----cCCcEEEeC
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQSV-DG----TSVAEIFKLYGEGFFREKETEVLQKLSL----MRQLVVSTG 71 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~~~~~-~g----~~~~~~~~~~~~~~~~~~e~~~~~~l~~----~~~~vi~~g 71 (193)
+|||||||+|+.|++.+|++++++|++++... .+ ..+.+++. .|...+......++..... .+..+|..|
T Consensus 12 ~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~-~g~~~~~~~~~~~l~~~l~~~~~~~~~~i~dg 90 (220)
T 1aky_A 12 PPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMD-QGGLVSDDIMVNMIKDELTNNPACKNGFILDG 90 (220)
T ss_dssp CTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHH-TTCCCCHHHHHHHHHHHHHHCGGGGSCEEEES
T ss_pred CCCCCHHHHHHHHHHHcCceEEehhHHHHHHHHcCChHHHHHHHHHH-CCCcCCHHHHHHHHHHHHHhccccCCCeEEeC
Confidence 69999999999999999999999999987642 12 22333332 2333334333333333221 122344444
Q ss_pred CceeeCHhhH----Hhcc-----CCeEEEEECCHHHHHHHHhccCCC-----------------------CCCccccCCC
Q 029455 72 GGAVTRPINW----RYMQ-----KGISVWLDVPLEALAQRIAAVGTD-----------------------SRPLLHQCES 119 (193)
Q Consensus 72 ~~~v~~~~~~----~~l~-----~~~vV~L~~~~~~~~~Rl~~~~~~-----------------------~R~~~~~~~~ 119 (193)
++...... ..+. .+.+|||++|++++.+|+..|... .|++... .
T Consensus 91 --~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~d~~~~~~l~~r--~ 166 (220)
T 1aky_A 91 --FPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVARITGRLIHPASGRSYHKIFNPPKEDMKDDVTGEALVQR--S 166 (220)
T ss_dssp --CCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTEEECTTTCCEEETTTBCCSSTTBCTTTCCBCBCC--T
T ss_pred --CCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhCCCccCccCCccccccCCCcccccccccccccccC--C
Confidence 22222111 1121 258999999999999999865211 1333322 1
Q ss_pred CChhHHHHHHHHHHHHHHHH---HHhhccceeechhhhhhcccccCCCCCHHHHHHHHHHHHHh
Q 029455 120 GDAYTEALNRLSTLWEERGE---AYANANARVSLENIAVKLGHKDVSSLTPVTIAIEALEQIEG 180 (193)
Q Consensus 120 ~~~~~~~~~~~~~~~~~r~~---~y~~~~~~i~~~~~~~~~~~iDt~~~~~~~~~~~i~~~~~~ 180 (193)
++..+...+++......+.+ .|...+.++ .||+ ..+++++++.|.+.+..
T Consensus 167 dd~~~~~~~rl~~~~~~~~~l~~~y~~~~~~~----------~id~-~~~~~~v~~~i~~~l~~ 219 (220)
T 1aky_A 167 DDNADALKKRLAAYHAQTEPIVDFYKKTGIWA----------GVDA-SQPPATVWADILNKLGK 219 (220)
T ss_dssp TCSHHHHHHHHHHHHHHTTHHHHHHHHHTCEE----------EEET-TSCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHhCCCEE----------EEEC-CCCHHHHHHHHHHHHhc
Confidence 22211223445444444444 454333333 3685 58999999999988753
No 23
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=99.63 E-value=5.4e-15 Score=114.35 Aligned_cols=169 Identities=17% Similarity=0.171 Sum_probs=98.6
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHHHHHh-C----CCCHHHHHHHhcchhhHH-----HHHHHHHHHhccCCcEEEe
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQSV-D----GTSVAEIFKLYGEGFFRE-----KETEVLQKLSLMRQLVVST 70 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~~~~~-~----g~~~~~~~~~~~~~~~~~-----~e~~~~~~l~~~~~~vi~~ 70 (193)
+|||||||+|+.|++.+|++++++|++++... . |..+.+++. .|...... +...+.......+.+|+ .
T Consensus 13 ~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~vi-d 90 (222)
T 1zak_A 13 APASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFME-KGQLVPDEIVVNMVKERLRQPDAQENGWLL-D 90 (222)
T ss_dssp STTSSHHHHHHHHHHHHCCEECCHHHHHHHHHHHTCHHHHHHHHHHH-TTCCCCHHHHHHHHHHHHHSHHHHHTCEEE-E
T ss_pred CCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcCCchhHHHHHHHH-cCCcCCHHHHHHHHHHHHhhccccCCcEEE-E
Confidence 69999999999999999999999999887632 1 222333332 23221111 11122111122345566 4
Q ss_pred CCceeeCHhhHHhcc-----CCeEEEEECCHHHHHHHHhccCCC---CC----------------CccccCCCCChhHHH
Q 029455 71 GGGAVTRPINWRYMQ-----KGISVWLDVPLEALAQRIAAVGTD---SR----------------PLLHQCESGDAYTEA 126 (193)
Q Consensus 71 g~~~v~~~~~~~~l~-----~~~vV~L~~~~~~~~~Rl~~~~~~---~R----------------~~~~~~~~~~~~~~~ 126 (193)
| ++........+. .+++|||++|++++.+|+..|..+ .| ++... ..+..+..
T Consensus 91 g--~~~~~~~~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~r~~~~~~g~~~~~~~~pp~~~~~~~~l~~r--~~d~~~~i 166 (222)
T 1zak_A 91 G--YPRSYSQAMALETLEIRPDTFILLDVPDELLVERVVGRRLDPVTGKIYHLKYSPPENEEIASRLTQR--FDDTEEKV 166 (222)
T ss_dssp S--CCCSHHHHHHHHTTTCCCSEEEEEECCHHHHHHHHTTEEECTTTCCEEESSSSCCCSSGGGGGCBCC--TTCCTTHH
T ss_pred C--CCCCHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcCCcccccCCccccccCCCcccccccccccC--CCCCHHHH
Confidence 5 333333333332 268999999999999999764211 11 11111 11212233
Q ss_pred HHHHHHHHHHHHHHHhhcc-ceeechhhhhhcccccCCCCCHHHHHHHHHHHHHhhhcccc
Q 029455 127 LNRLSTLWEERGEAYANAN-ARVSLENIAVKLGHKDVSSLTPVTIAIEALEQIEGFLKEED 186 (193)
Q Consensus 127 ~~~~~~~~~~r~~~y~~~~-~~i~~~~~~~~~~~iDt~~~~~~~~~~~i~~~~~~~~~~~~ 186 (193)
..++...+.++.+.+...+ .++ +||+ ..+++++++.|.+.+...+....
T Consensus 167 ~~Rl~~~~~~~~~l~~~y~~~~~----------~Id~-~~~~~ev~~~I~~~l~~~l~~~~ 216 (222)
T 1zak_A 167 KLRLETYYQNIESLLSTYENIIV----------KVQG-DATVDAVFAKIDELLGSILEKKN 216 (222)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCEE----------EEEC-SSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcEE----------EEEC-CCCHHHHHHHHHHHHHhhccccc
Confidence 4455566666666544322 222 3687 69999999999999988775544
No 24
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=99.63 E-value=4.9e-16 Score=116.39 Aligned_cols=149 Identities=22% Similarity=0.301 Sum_probs=89.0
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHHHHHhCCCCHHHHHHHhcchhh----HH-HHHHHHHHHhccCCcEEEeCCcee
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFF----RE-KETEVLQKLSLMRQLVVSTGGGAV 75 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~~~~~~g~~~~~~~~~~~~~~~----~~-~e~~~~~~l~~~~~~vi~~g~~~v 75 (193)
+|||||||+++.|++.+|+++++.|.+++... . +...+...+ .. .-...+......+..|+.... ..
T Consensus 19 ~~GsGKst~~~~l~~~~~~~~~~~d~~~~~~~-~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~vv~~~~-~~ 90 (180)
T 3iij_A 19 TPGVGKTTLGKELASKSGLKYINVGDLAREEQ-L------YDGYDEEYDCPILDEDRVVDELDNQMREGGVIVDYHG-CD 90 (180)
T ss_dssp STTSSHHHHHHHHHHHHCCEEEEHHHHHHHHT-C------EEEEETTTTEEEECHHHHHHHHHHHHHHCCEEEECSC-CT
T ss_pred CCCCCHHHHHHHHHHHhCCeEEEHHHHHhhcc-h------hhhhhhhhcCccCChHHHHHHHHHHHhcCCEEEEech-hh
Confidence 69999999999999999999999999887652 0 000111111 00 001112222223445554221 11
Q ss_pred eCHhhHHhccCCeEEEEECCHHHHHHHHhccCCCCCCccccCCCCChhHHHHHHHHHHHHHHHHHHhhccceeechhhhh
Q 029455 76 TRPINWRYMQKGISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVSLENIAV 155 (193)
Q Consensus 76 ~~~~~~~~l~~~~vV~L~~~~~~~~~Rl~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~r~~~y~~~~~~i~~~~~~~ 155 (193)
.....+ .+.+|||+||++++.+|+..|+ ..++.... . ...+.+..++.++.+.|. ++.+|
T Consensus 91 ~~~~~~----~~~vi~L~~~~e~l~~R~~~r~-~~~~~~~~---~----~~~~~~~~~~~~~~~~y~-~~~~i------- 150 (180)
T 3iij_A 91 FFPERW----FHIVFVLRTDTNVLYERLETRG-YNEKKLTD---N----IQCEIFQVLYEEATASYK-EEIVH------- 150 (180)
T ss_dssp TSCGGG----CSEEEEEECCHHHHHHHHHHTT-CCHHHHHH---H----HHHHHTTHHHHHHHHHSC-GGGEE-------
T ss_pred hcchhc----CCEEEEEECCHHHHHHHHHHcC-CCHHHHHH---H----HHHHHHHHHHHHHHHHcC-CCeEE-------
Confidence 111100 2689999999999999998742 12222111 0 012445667778888776 35654
Q ss_pred hcccccCCCCCHHHH---HHHHHHHHHhhh
Q 029455 156 KLGHKDVSSLTPVTI---AIEALEQIEGFL 182 (193)
Q Consensus 156 ~~~~iDt~~~~~~~~---~~~i~~~~~~~~ 182 (193)
||++.+++++ ++.|++++.++.
T Consensus 151 -----~~~~~~~~ev~~~v~~i~~~l~~~~ 175 (180)
T 3iij_A 151 -----QLPSNKPEELENNVDQILKWIEQWI 175 (180)
T ss_dssp -----EEECSSHHHHHHHHHHHHHHHHHHH
T ss_pred -----EcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 6778999999 777777776654
No 25
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=99.62 E-value=1.7e-14 Score=111.77 Aligned_cols=163 Identities=16% Similarity=0.101 Sum_probs=89.3
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHHHHHhCCCC-----HHHHHHHhcchhhHHHHHHHH-HHHh---ccCCcEEEeC
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTS-----VAEIFKLYGEGFFREKETEVL-QKLS---LMRQLVVSTG 71 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~~~~~~g~~-----~~~~~~~~~~~~~~~~e~~~~-~~l~---~~~~~vi~~g 71 (193)
||||||+|+|+.|++++|+++++++++++......+ +.+++. .|....-++-..++ ..+. .....+|..|
T Consensus 37 pPGsGKgTqa~~L~~~~g~~hIstGdllR~~i~~~t~lg~~~~~~~~-~G~lVpde~~~~lv~~~l~~~~~~~~g~ilDG 115 (217)
T 3umf_A 37 GPGSGKGTQCEKLVQKFHFNHLSSGDLLRAEVQSGSPKGKELKAMME-RGELVPLEVVLALLKEAMIKLVDKNCHFLIDG 115 (217)
T ss_dssp CTTCCHHHHHHHHHHHHCCEEECHHHHHHHHHTTCCHHHHHHHHHHH-HTCCCCHHHHHHHHHHHHHHHTTTCSEEEEET
T ss_pred CCCCCHHHHHHHHHHHHCCceEcHHHHHHHHHHcCCchHHHHHHHHh-cCCCCCHHHHHHHHHHHHhhccccccCccccc
Confidence 799999999999999999999999999987652222 233332 23322222212222 2222 1222234444
Q ss_pred CceeeCHhhHHhcc-----CCeEEEEECCHHHHHHHHhccCCCCCCccccCCCCChhHHHHHHHHHHHHHHHHHHhh-cc
Q 029455 72 GGAVTRPINWRYMQ-----KGISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYAN-AN 145 (193)
Q Consensus 72 ~~~v~~~~~~~~l~-----~~~vV~L~~~~~~~~~Rl~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~r~~~y~~-~~ 145 (193)
++........|. .+.+|+|++|.+++.+|+..|. ..... .+|. .+.+. .|...|.. ..
T Consensus 116 --fPRt~~Qa~~l~~~~~~~~~vi~l~v~~e~~~~Rl~~R~----~~~~R--~DD~----~e~i~----~Rl~~Y~~~t~ 179 (217)
T 3umf_A 116 --YPRELDQGIKFEKEVCPCLCVINFDVSEEVMRKRLLKRA----ETSNR--VDDN----EETIV----KRFRTFNELTK 179 (217)
T ss_dssp --BCSSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHSCC------------CHHH----HHHHH----HHHHHHHHHTH
T ss_pred --CCCcHHHHHHHHHhCCccCEEEeccCCHHHHHHHHhccc----ccCCC--CCCC----HHHHH----HHHHHHHHHHH
Confidence 444333222231 3789999999999999998642 11111 1222 12222 22222222 11
Q ss_pred ceeechhhhhhcccccCCCCCHHHHHHHHHHHHHhh
Q 029455 146 ARVSLENIAVKLGHKDVSSLTPVTIAIEALEQIEGF 181 (193)
Q Consensus 146 ~~i~~~~~~~~~~~iDt~~~~~~~~~~~i~~~~~~~ 181 (193)
.+++++.-.+....||+ ..+++++.+.|...++++
T Consensus 180 pl~~~Y~~~~~l~~Idg-~~~~eeV~~~I~~~l~k~ 214 (217)
T 3umf_A 180 PVIEHYKQQNKVITIDA-SGTVDAIFDKVNHELQKF 214 (217)
T ss_dssp HHHHHHHTTTCEEEEET-TSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCCEEEEEC-CCCHHHHHHHHHHHHHHc
Confidence 12221111122225786 479999999999988753
No 26
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=99.62 E-value=6.8e-15 Score=112.41 Aligned_cols=149 Identities=18% Similarity=0.222 Sum_probs=85.6
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHHHHHh-CC-CCHHHHHHHhcchhhHH----------------------HH---
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQSV-DG-TSVAEIFKLYGEGFFRE----------------------KE--- 53 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~~~~~-~g-~~~~~~~~~~~~~~~~~----------------------~e--- 53 (193)
+|||||||+++.|++ +|++++|+|.+.+... +| ..+.+++..+|...+.. ++
T Consensus 10 ~~GsGKST~~~~La~-lg~~~id~d~~~~~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~~~f~~~~~~~~l~~~~ 88 (206)
T 1jjv_A 10 GIGSGKTTIANLFTD-LGVPLVDADVVAREVVAKDSPLLSKIVEHFGAQILTEQGELNRAALRERVFNHDEDKLWLNNLL 88 (206)
T ss_dssp STTSCHHHHHHHHHT-TTCCEEEHHHHHHHTTCSSCHHHHHHHHHHCTTCC------CHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH-CCCcccchHHHHHHHccCChHHHHHHHHHhCHHHhccCccccHHHHHHHHhCCHHHHHHHHhcc
Confidence 699999999999987 9999999999887643 11 22334444444322210 00
Q ss_pred -----HHHHHHHhc-cCCcEEEeCCceeeCHhhHHhcc-CCeEEEEECCHHHHHHHHhccCCCCCCccccCCCCChhHHH
Q 029455 54 -----TEVLQKLSL-MRQLVVSTGGGAVTRPINWRYMQ-KGISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEA 126 (193)
Q Consensus 54 -----~~~~~~l~~-~~~~vi~~g~~~v~~~~~~~~l~-~~~vV~L~~~~~~~~~Rl~~~~~~~R~~~~~~~~~~~~~~~ 126 (193)
..+...+.. .+..+|..+. +..+.. +.+ .+.+|||++|++++.+|+..| +...
T Consensus 89 ~p~v~~~~~~~~~~~~~~~vv~~~~---~l~e~~-~~~~~d~vi~l~~~~e~~~~Rl~~R-----~~~~----------- 148 (206)
T 1jjv_A 89 HPAIRERMKQKLAEQTAPYTLFVVP---LLIENK-LTALCDRILVVDVSPQTQLARSAQR-----DNNN----------- 148 (206)
T ss_dssp HHHHHHHHHHHHHTCCSSEEEEECT---TTTTTT-CGGGCSEEEEEECCHHHHHHHHC----------C-----------
T ss_pred CHHHHHHHHHHHHhcCCCEEEEEec---hhhhcC-cHhhCCEEEEEECCHHHHHHHHHHc-----CCCC-----------
Confidence 000011111 1233443331 111111 122 278999999999999999863 2111
Q ss_pred HHHHHHHHH---HHHHHHhhccceeechhhhhhcccccCCCCCHH----HHHHHHHHHHHhhhc
Q 029455 127 LNRLSTLWE---ERGEAYANANARVSLENIAVKLGHKDVSSLTPV----TIAIEALEQIEGFLK 183 (193)
Q Consensus 127 ~~~~~~~~~---~r~~~y~~~~~~i~~~~~~~~~~~iDt~~~~~~----~~~~~i~~~~~~~~~ 183 (193)
.+.+.+.+. .+.+.|+.+|.+| ||++ +++ ++++.|.+.+.+++.
T Consensus 149 ~e~~~~r~~~q~~~~~~~~~ad~vI------------dn~~-~~~~~~~~~~~~i~~~~~~~~~ 199 (206)
T 1jjv_A 149 FEQIQRIMNSQVSQQERLKWADDVI------------NNDA-ELAQNLPHLQQKVLELHQFYLQ 199 (206)
T ss_dssp HHHHHHHHHHSCCHHHHHHHCSEEE------------ECCS-CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCChHHHHHhCCEEE------------ECCC-CccccHHHHHHHHHHHHHHHHH
Confidence 122333333 3456676788765 7776 999 888888888876554
No 27
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=99.62 E-value=1.5e-16 Score=119.94 Aligned_cols=149 Identities=16% Similarity=0.145 Sum_probs=82.8
Q ss_pred CCCCchHHHHHHHHHh-cCCcEeechHHHHHHhCCCCHHHHHHHhcchhh-HHHHHH---HHHHHh-ccCCcEEEeCCce
Q 029455 1 MMGSGKTTVGKILSGV-LGYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFF-REKETE---VLQKLS-LMRQLVVSTGGGA 74 (193)
Q Consensus 1 ~~GsGKSTia~~La~~-lg~~~~d~d~~~~~~~~g~~~~~~~~~~~~~~~-~~~e~~---~~~~l~-~~~~~vi~~g~~~ 74 (193)
+|||||||+|+.|++. +|++++|+|.+++...--....+ ..+.... +..+.. .+..+. ..+..|+. +.
T Consensus 18 ~~GsGKSTv~~~La~~l~g~~~id~d~~~~~~~~~~~~~~---~~~~~~~~r~~~~~~~~~l~~~~~~~g~~vi~-~~-- 91 (184)
T 1y63_A 18 TPGTGKTSMAEMIAAELDGFQHLEVGKLVKENHFYTEYDT---ELDTHIIEEKDEDRLLDFMEPIMVSRGNHVVD-YH-- 91 (184)
T ss_dssp STTSSHHHHHHHHHHHSTTEEEEEHHHHHHHTTCSCC---------CCCCCHHHHHHHHHHHHHHHTSSSEEEEE-CS--
T ss_pred CCCCCHHHHHHHHHHhcCCCEEeeHHHHHHHhhhhhhHHH---HhhhcccCCCCHHHHHHHHHHHHhccCCEEEe-Cc--
Confidence 6999999999999999 79999999999876420001111 1111111 001111 122222 22223332 21
Q ss_pred eeCHhhHHhcc---CCeEEEEECCHHHHHHHHhccCCCCCCccccCCCCChhHHHHHH-HHHHHHHHHHHHhhccceeec
Q 029455 75 VTRPINWRYMQ---KGISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNR-LSTLWEERGEAYANANARVSL 150 (193)
Q Consensus 75 v~~~~~~~~l~---~~~vV~L~~~~~~~~~Rl~~~~~~~R~~~~~~~~~~~~~~~~~~-~~~~~~~r~~~y~~~~~~i~~ 150 (193)
....+. .+.+|||+||++++.+|+..|+ ..|+.... ....+ +..++.++.+.|. ++.+|
T Consensus 92 -----~~~~~~~~~~~~vi~l~~~~e~~~~Rl~~R~-~~~~~~~~--------~~~~q~~~~l~~~~~~~y~-~~~vi-- 154 (184)
T 1y63_A 92 -----SSELFPERWFHMVVVLHTSTEVLFERLTKRQ-YSEAKRAE--------NMEAEIQCICEEEARDAYE-DDIVL-- 154 (184)
T ss_dssp -----CCTTSCGGGCSEEEEEECCHHHHHHHHHHTT-CCHHHHHH--------HHHHHHTTHHHHHHHHHSC-GGGEE--
T ss_pred -----hHhhhhhccCCEEEEEECCHHHHHHHHHhCC-CChhhhHh--------hHHHHHHHHHHHHHHHHhc-cCcEE--
Confidence 111222 2689999999999999999742 12322111 01111 4444666777776 45555
Q ss_pred hhhhhhcccccCCCCCHHHH---HHHHHHHHHhhh
Q 029455 151 ENIAVKLGHKDVSSLTPVTI---AIEALEQIEGFL 182 (193)
Q Consensus 151 ~~~~~~~~~iDt~~~~~~~~---~~~i~~~~~~~~ 182 (193)
||++.+++++ ++.|.+.+..+.
T Consensus 155 ----------~~n~~~~~~~~~~v~~i~~~l~~~~ 179 (184)
T 1y63_A 155 ----------VRENDTLEQMAATVEEIRERVEVLK 179 (184)
T ss_dssp ----------EEECSSHHHHHHHHHHHHHHHHHHC
T ss_pred ----------ECCCCCHHHHHHHHHHHHHHHHHHH
Confidence 6667899999 666655555443
No 28
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=99.61 E-value=2.8e-14 Score=108.65 Aligned_cols=160 Identities=14% Similarity=0.172 Sum_probs=91.9
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHHHHHh--CCCCH----HHHHHHhcchhhHHHHHHHH----HHHhccC-CcEEE
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQSV--DGTSV----AEIFKLYGEGFFREKETEVL----QKLSLMR-QLVVS 69 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~~~~~--~g~~~----~~~~~~~~~~~~~~~e~~~~----~~l~~~~-~~vi~ 69 (193)
+|||||||+|+.|++.+|++++++|.+++... .|... .+++. .|...+.......+ ......+ ..++.
T Consensus 23 ~~GsGKsT~~~~L~~~~g~~~i~~d~~~~~~~~~~~~~~~~~i~~~~~-~g~~~~~~~~~~~l~~~i~~~l~~g~~~~i~ 101 (203)
T 1ukz_A 23 GPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIK-EGQIVPQEITLALLRNAISDNVKANKHKFLI 101 (203)
T ss_dssp STTSSHHHHHHHHHHHSSCEEEEHHHHHHHHHHSTTCSCHHHHHHHHH-TTCCCCHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCCCHHHHHHHHHHHcCceEEeHHHHHHHHHhccCCHHHHHHHHHHH-cCCcCCHHHHHHHHHHHHHhhhccCCCeEEE
Confidence 69999999999999999999999999887653 24332 22322 23322222222222 2222222 33444
Q ss_pred eCCceeeCHhh---HH-hcc-CCeEEEEECCHHHHHHHHhccCC-CCCCccccCCCCChhHHHHHHHHHHHHHHHHH---
Q 029455 70 TGGGAVTRPIN---WR-YMQ-KGISVWLDVPLEALAQRIAAVGT-DSRPLLHQCESGDAYTEALNRLSTLWEERGEA--- 140 (193)
Q Consensus 70 ~g~~~v~~~~~---~~-~l~-~~~vV~L~~~~~~~~~Rl~~~~~-~~R~~~~~~~~~~~~~~~~~~~~~~~~~r~~~--- 140 (193)
.|. +...+. .+ .+. .+.+|||++|++++.+|+..|.. ++|. .+..+.....+...+..+.+.
T Consensus 102 dg~--~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~Rl~~R~~~~~~~-------~~~~e~~~~r~~~~~~~~~~~~~~ 172 (203)
T 1ukz_A 102 DGF--PRKMDQAISFERDIVESKFILFFDCPEDIMLERLLERGKTSGRS-------DDNIESIKKRFNTFKETSMPVIEY 172 (203)
T ss_dssp ETC--CCSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHHHHHHCCT-------TCSHHHHHHHHHHHHHTTHHHHHH
T ss_pred eCC--CCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhccccCCCC-------CCCHHHHHHHHHHHHHhhHHHHHH
Confidence 442 211111 11 222 37899999999999999987421 1121 111112233344444444444
Q ss_pred HhhccceeechhhhhhcccccCCCCCHHHHHHHHHHHHHhh
Q 029455 141 YANANARVSLENIAVKLGHKDVSSLTPVTIAIEALEQIEGF 181 (193)
Q Consensus 141 y~~~~~~i~~~~~~~~~~~iDt~~~~~~~~~~~i~~~~~~~ 181 (193)
|..++.++ +||++ .+++++.+.|.+.+...
T Consensus 173 ~~~~~~vi----------~id~~-~~~e~v~~~i~~~l~~~ 202 (203)
T 1ukz_A 173 FETKSKVV----------RVRCD-RSVEDVYKDVQDAIRDS 202 (203)
T ss_dssp HHTTTCEE----------EEECS-SCHHHHHHHHHHHHHHH
T ss_pred HHhcCcEE----------EEECC-CCHHHHHHHHHHHHhcc
Confidence 33355544 36875 99999999999988754
No 29
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=99.61 E-value=1.3e-15 Score=118.41 Aligned_cols=105 Identities=19% Similarity=0.229 Sum_probs=63.8
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHHHHHh-CCC----CHHHHHHHhcchhhHHHHHH-HHHHHhc--cCCcEEEeCC
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQSV-DGT----SVAEIFKLYGEGFFREKETE-VLQKLSL--MRQLVVSTGG 72 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~~~~~-~g~----~~~~~~~~~~~~~~~~~e~~-~~~~l~~--~~~~vi~~g~ 72 (193)
+|||||||+|+.|++.+|++++++|++++... .|. .+.+++. .|...+...... +...+.. ...+|+...+
T Consensus 15 ~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~-~g~~~~~~~~~~~~~~~l~~~~~~~~vid~~~ 93 (227)
T 1zd8_A 15 APGSGKGTVSSRITTHFELKHLSSGDLLRDNMLRGTEIGVLAKAFID-QGKLIPDDVMTRLALHELKNLTQYSWLLDGFP 93 (227)
T ss_dssp CTTSSHHHHHHHHHHHSSSEEEEHHHHHHHHHHHTCHHHHHHHHHHT-TTCCCCHHHHHHHHHHHHHTCTTSCEEEESCC
T ss_pred CCCCCHHHHHHHHHHHcCCeEEechHHHHHhhhcCChHHHHHHHHHH-cCCcCCHHHHHHHHHHHHhcccCCCEEEeCCC
Confidence 69999999999999999999999999887643 122 2223332 233334433222 2233432 2344544322
Q ss_pred ceeeCHhhHHhcc-CCeEEEEECCHHHHHHHHhcc
Q 029455 73 GAVTRPINWRYMQ-KGISVWLDVPLEALAQRIAAV 106 (193)
Q Consensus 73 ~~v~~~~~~~~l~-~~~vV~L~~~~~~~~~Rl~~~ 106 (193)
+.+.....+..+. .+.+|||++|++++.+|+..|
T Consensus 94 ~~~~~~~~l~~~~~~~~vi~L~~~~~~~~~R~~~R 128 (227)
T 1zd8_A 94 RTLPQAEALDRAYQIDTVINLNVPFEVIKQRLTAR 128 (227)
T ss_dssp CSHHHHHHHHTTSCCCEEEEEECCHHHHHHHHTCE
T ss_pred CCHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHcC
Confidence 2222112222222 379999999999999999864
No 30
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=99.60 E-value=2.2e-14 Score=110.35 Aligned_cols=154 Identities=19% Similarity=0.264 Sum_probs=95.5
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHHHHHh--CCCCHHHHHHHhcchhhH----------------HH-HHHHHH---
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQSV--DGTSVAEIFKLYGEGFFR----------------EK-ETEVLQ--- 58 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~~~~~--~g~~~~~~~~~~~~~~~~----------------~~-e~~~~~--- 58 (193)
.+||||||+++.|++ +|++++|+|.+.++.+ .+..+.+++..+|...+. .. ..+.+.
T Consensus 17 gigsGKStv~~~l~~-~g~~vidaD~ia~~l~~~~~~~~~~i~~~fG~~~~~~dg~ldR~~L~~~vF~d~~~~~~L~~i~ 95 (210)
T 4i1u_A 17 GIGSGKTTVADLFAA-RGASLVDTDLIAHRITAPAGLAMPAIEQTFGPAFVAADGSLDRARMRALIFSDEDARRRLEAIT 95 (210)
T ss_dssp CTTSCHHHHHHHHHH-TTCEEEEHHHHHHHHTSTTCTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHHHCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH-CCCcEEECcHHHHHHhcCCcHHHHHHHHHhChhhcCCCCCCcHHHHHHHHhCCHHHHHHHHHHh
Confidence 489999999999987 9999999999998876 245677888777765431 00 000111
Q ss_pred ----------HHhc-cCCcEEEeCCceeeCH-hhHHhccCCeEEEEECCHHHHHHHHhccCCCCCCccccCCCCChhHHH
Q 029455 59 ----------KLSL-MRQLVVSTGGGAVTRP-INWRYMQKGISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEA 126 (193)
Q Consensus 59 ----------~l~~-~~~~vi~~g~~~v~~~-~~~~~l~~~~vV~L~~~~~~~~~Rl~~~~~~~R~~~~~~~~~~~~~~~ 126 (193)
.+.. ....++...+ .+.+ ..+..+ -+.+|||+||++++.+|+.+| +.... +++
T Consensus 96 HP~I~~~~~~~~~~~~~~~vv~d~p--LL~E~~~~~~~-~D~vi~V~ap~e~r~~Rl~~R-----dg~s~-------eea 160 (210)
T 4i1u_A 96 HPLIRAETEREARDAQGPYVIFVVP--LLVESRNWKAR-CDRVLVVDCPVDTQIARVMQR-----NGFTR-------EQV 160 (210)
T ss_dssp HHHHHHHHHHHHHTCCSSSEEEECT--TCTTCHHHHHH-CSEEEEEECCHHHHHHHHHHH-----HCCCH-------HHH
T ss_pred hHHHHHHHHHHHHhcCCCEEEEEEe--cccccCCcccc-CCeEEEEECCHHHHHHHHHhc-----CCCCH-------HHH
Confidence 1111 1234444331 2233 222211 278999999999999999984 21111 123
Q ss_pred HHHHHHHHHHHHHHHhhccceeechhhhhhcccccCCCCCHHHHHHHHHHHHHhhhc
Q 029455 127 LNRLSTLWEERGEAYANANARVSLENIAVKLGHKDVSSLTPVTIAIEALEQIEGFLK 183 (193)
Q Consensus 127 ~~~~~~~~~~r~~~y~~~~~~i~~~~~~~~~~~iDt~~~~~~~~~~~i~~~~~~~~~ 183 (193)
.+.+...+. ....++.||.+| |++..+.+++.+.|...+.+++.
T Consensus 161 ~~ri~~Q~~-~eek~~~AD~VI------------dN~~gsle~l~~qV~~l~~~~~~ 204 (210)
T 4i1u_A 161 EAIIARQAT-REARLAAADDVI------------VNDAATPDALAVQVDALHQRYLA 204 (210)
T ss_dssp HHHHHHSCC-HHHHHHTCSEEE------------ECSSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCC-hHHHHHhCCEEE------------ECCCCCHHHHHHHHHHHHHHHHH
Confidence 344433321 233455688887 54426899999999888877654
No 31
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=99.60 E-value=4.3e-14 Score=110.22 Aligned_cols=165 Identities=18% Similarity=0.168 Sum_probs=92.7
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHHHHHhC-----CCCHHHHHHHhcchhhHHHHHHHHHHHhcc---CCcEEEeCC
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVD-----GTSVAEIFKLYGEGFFREKETEVLQKLSLM---RQLVVSTGG 72 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~~~~~~-----g~~~~~~~~~~~~~~~~~~e~~~~~~l~~~---~~~vi~~g~ 72 (193)
+|||||||+|+.|++++|++++++|+++++... |..+.+++. .|...+.+....++...... +..+|..|
T Consensus 24 ~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~~~~~g~~i~~~~~-~g~~~~~~~~~~~i~~~l~~~~~~~g~ildg- 101 (233)
T 1ak2_A 24 PPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMD-AGKLVSDEMVLELIEKNLETPPCKNGFLLDG- 101 (233)
T ss_dssp CTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHH-TTCCCCHHHHHHHHHHHHTSGGGTTCEEEES-
T ss_pred CCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcCChhHHHHHHHHH-CCCcCCHHHHHHHHHHHHhcccccCcEEEeC-
Confidence 699999999999999999999999998876421 222333332 23333344333344332221 12244444
Q ss_pred ceeeCHhhH----Hhc-----cCCeEEEEECCHHHHHHHHhccCCC-----------------------CCCccccCCCC
Q 029455 73 GAVTRPINW----RYM-----QKGISVWLDVPLEALAQRIAAVGTD-----------------------SRPLLHQCESG 120 (193)
Q Consensus 73 ~~v~~~~~~----~~l-----~~~~vV~L~~~~~~~~~Rl~~~~~~-----------------------~R~~~~~~~~~ 120 (193)
++...... ..+ ..+.+|||++|++++.+|+..|..+ .|++... .+
T Consensus 102 -~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~r--~d 178 (233)
T 1ak2_A 102 -FPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLIRRITGRLIHPQSGRSYHEEFNPPKEPMKDDITGEPLIRR--SD 178 (233)
T ss_dssp -CCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTCEECTTTCCEEBTTTBCCSSTTBCTTTCCBCEEC--CC
T ss_pred -CCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCcCCccCCccccccCCCccccccccccccccCC--CC
Confidence 22111111 122 1378999999999999999864210 1222221 12
Q ss_pred ChhHHHHHHHHHHHHHHHH---HHhhccceeechhhhhhcccccCCCCCHHHHHHHHHHHHHhh
Q 029455 121 DAYTEALNRLSTLWEERGE---AYANANARVSLENIAVKLGHKDVSSLTPVTIAIEALEQIEGF 181 (193)
Q Consensus 121 ~~~~~~~~~~~~~~~~r~~---~y~~~~~~i~~~~~~~~~~~iDt~~~~~~~~~~~i~~~~~~~ 181 (193)
+..+...+++......+.+ .|...+..+ +||++ .+++++++.|.+.+...
T Consensus 179 ~~~~~~~~r~~~y~~~~~~~~~~y~~~~~~~----------~id~~-~~~~~v~~~I~~~l~~~ 231 (233)
T 1ak2_A 179 DNKKALKIRLEAYHTQTTPLVEYYSKRGIHS----------AIDAS-QTPDVVFASILAAFSKA 231 (233)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHTTCEE----------EEETT-SCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhcCCEE----------EEECC-CCHHHHHHHHHHHHHhh
Confidence 2211223344433333334 333222222 37875 89999999999988754
No 32
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=99.59 E-value=9.6e-15 Score=111.31 Aligned_cols=143 Identities=20% Similarity=0.222 Sum_probs=84.6
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHHHHH-----hCCCCHHHHHHHhcchhhHHHHHHHHHHHhc-cCCcEEEeCCce
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQS-----VDGTSVAEIFKLYGEGFFREKETEVLQKLSL-MRQLVVSTGGGA 74 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~~~~-----~~g~~~~~~~~~~~~~~~~~~e~~~~~~l~~-~~~~vi~~g~~~ 74 (193)
+|||||||+++.|++.+|+.+++.|.+.... ..|....+. .....+. .+.+... ...+|+.++
T Consensus 26 ~~GsGKSTla~~L~~~lg~~~i~~d~~~~~~~~~~~~~g~~~~~~---~~~~~~~-----~l~~~~~~~~~vivd~~--- 94 (202)
T 3t61_A 26 VSGSGKSSVGEAIAEACGYPFIEGDALHPPENIRKMSEGIPLTDD---DRWPWLA-----AIGERLASREPVVVSCS--- 94 (202)
T ss_dssp STTSCHHHHHHHHHHHHTCCEEEGGGGCCHHHHHHHHHTCCCCHH---HHHHHHH-----HHHHHHTSSSCCEEECC---
T ss_pred CCCCCHHHHHHHHHHHhCCEEEeCCcCcchhhHHHHhcCCCCCch---hhHHHHH-----HHHHHHhcCCCEEEECC---
Confidence 6999999999999999999999999875221 012221111 0111111 1222223 334555533
Q ss_pred eeCHhhHHhcc---C--CeEEEEECCHHHHHHHHhccCCCCCCccccCCCCChhHHHHHHHHHHHHHHHHHHhh-cccee
Q 029455 75 VTRPINWRYMQ---K--GISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYAN-ANARV 148 (193)
Q Consensus 75 v~~~~~~~~l~---~--~~vV~L~~~~~~~~~Rl~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~r~~~y~~-~~~~i 148 (193)
......+..+. . ..+|||+||++++.+|+..|.. ++ .+ .+.+...+..+.+.+.. ++.+
T Consensus 95 ~~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R~~--~~-------~~-----~~~~~~~~~~~~~~~~~~~~~~- 159 (202)
T 3t61_A 95 ALKRSYRDKLRESAPGGLAFVFLHGSESVLAERMHHRTG--HF-------MP-----SSLLQTQLETLEDPRGEVRTVA- 159 (202)
T ss_dssp CCSHHHHHHHHHTSTTCCEEEEEECCHHHHHHHHHHHHS--SC-------CC-----HHHHHHHHHHCCCCTTSTTEEE-
T ss_pred CCCHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHHHhhc--cC-------CC-----HHHHHHHHHhcCCCCCCCCeEE-
Confidence 23444444333 1 4899999999999999987521 11 00 23344444433333332 3333
Q ss_pred echhhhhhcccccCCCCCHHHHHHHHHHHHHhh
Q 029455 149 SLENIAVKLGHKDVSSLTPVTIAIEALEQIEGF 181 (193)
Q Consensus 149 ~~~~~~~~~~~iDt~~~~~~~~~~~i~~~~~~~ 181 (193)
|||+ .+++++++.|.+.+...
T Consensus 160 -----------Id~~-~~~~e~~~~I~~~l~~~ 180 (202)
T 3t61_A 160 -----------VDVA-QPLAEIVREALAGLARL 180 (202)
T ss_dssp -----------EESS-SCHHHHHHHHHHHHHHH
T ss_pred -----------EeCC-CCHHHHHHHHHHHHHHh
Confidence 5876 89999999999988653
No 33
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=99.58 E-value=3.5e-14 Score=108.07 Aligned_cols=155 Identities=17% Similarity=0.142 Sum_probs=86.4
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHHHHHh-CCC----CHHHHHHHhcchhhHHHHHHHHHHHhc---cCCcEEEeCC
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQSV-DGT----SVAEIFKLYGEGFFREKETEVLQKLSL---MRQLVVSTGG 72 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~~~~~-~g~----~~~~~~~~~~~~~~~~~e~~~~~~l~~---~~~~vi~~g~ 72 (193)
+|||||||+|+.|++.+|++++++|++++... .+. .+.+++. .|...+......++..... .+..+|..|
T Consensus 28 ~~GsGKST~a~~La~~l~~~~i~~d~~~r~~~~~~~~~g~~i~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~vIldg- 105 (201)
T 2cdn_A 28 PPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLD-AGDLVPSDLTNELVDDRLNNPDAANGFILDG- 105 (201)
T ss_dssp CTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHTTCHHHHHHHHHHH-HTCCCCHHHHHHHHHHHTTSGGGTTCEEEES-
T ss_pred CCCCCHHHHHHHHHHHhCCcEEehhHHHHHHHHcCChHHHHHHHHHH-cCCcccHHHHHHHHHHHHhcccCCCeEEEEC-
Confidence 69999999999999999999999999887632 122 2233332 2333344333333333221 122344333
Q ss_pred ceeeCHhh---H-Hhcc-----CCeEEEEECCHHHHHHHHhccCCCCCCccccCCCCChhHHHHHHHHHHHHHHHHHHhh
Q 029455 73 GAVTRPIN---W-RYMQ-----KGISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYAN 143 (193)
Q Consensus 73 ~~v~~~~~---~-~~l~-----~~~vV~L~~~~~~~~~Rl~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~r~~~y~~ 143 (193)
++..... + ..+. .+.+|||+||++++.+|+..| .|+... .+...+.+...+..+.+.++.
T Consensus 106 -~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R---~r~~~~-------~e~~~~r~~~~~~~~~~~~~~ 174 (201)
T 2cdn_A 106 -YPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLERLKGR---GRADDT-------DDVILNRMKVYRDETAPLLEY 174 (201)
T ss_dssp -CCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHHH---CCTTCS-------HHHHHHHHHHHHHHTTTHHHH
T ss_pred -CCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcC---CCCCCC-------HHHHHHHHHHHHHhhHHHHHH
Confidence 1221111 1 1222 268999999999999999875 243211 111223333333322222222
Q ss_pred -ccceeechhhhhhcccccCCCCCHHHHHHHHHHHHH
Q 029455 144 -ANARVSLENIAVKLGHKDVSSLTPVTIAIEALEQIE 179 (193)
Q Consensus 144 -~~~~i~~~~~~~~~~~iDt~~~~~~~~~~~i~~~~~ 179 (193)
....+ +||+ ..+++++++.|.+.+.
T Consensus 175 ~~~~~~----------~Id~-~~~~eev~~~I~~~l~ 200 (201)
T 2cdn_A 175 YRDQLK----------TVDA-VGTMDEVFARALRALG 200 (201)
T ss_dssp TTTTEE----------EEEC-CSCHHHHHHHHHHHTT
T ss_pred hcCcEE----------EEeC-CCCHHHHHHHHHHHHc
Confidence 11111 3686 5899999999987764
No 34
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=99.57 E-value=1.3e-15 Score=113.51 Aligned_cols=146 Identities=14% Similarity=0.059 Sum_probs=81.4
Q ss_pred CCCCchHHHHHHHHHhcCCcEee--chHHHHHHhCCC--------CHHHHHHHhcchhhHHHHHHH---HHHHhccCCcE
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFD--CDTLIEQSVDGT--------SVAEIFKLYGEGFFREKETEV---LQKLSLMRQLV 67 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d--~d~~~~~~~~g~--------~~~~~~~~~~~~~~~~~e~~~---~~~l~~~~~~v 67 (193)
+|||||||+|+.|+++++.++++ .|.++.... +. ++.+.+...+...|+..+..+ +..+...+..+
T Consensus 11 ~~GsGKST~a~~La~~l~~~~~~~~~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v 89 (178)
T 1qhx_A 11 GSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMP-LKMQSAEGGIEFDADGGVSIGPEFRALEGAWAEGVVAMARAGARI 89 (178)
T ss_dssp CTTSSHHHHHHHHHHHSSSCEEEEEHHHHHHHSC-GGGGTSTTSEEECTTSCEEECHHHHHHHHHHHHHHHHHHHTTCEE
T ss_pred CCCCCHHHHHHHHHHhcCCCeEEeccchHhhhcc-hhhccchhhccccCCCccccchhHHHHHHHHHHHHHHHHhcCCeE
Confidence 69999999999999999987764 787765432 21 110000011223344433322 33344444344
Q ss_pred EEeCCceee-C----HhhHHhccC-C-eEEEEECCHHHHHHHHhccCCCCCCccccCCCCChhHHHHHHHHHHHHHHHHH
Q 029455 68 VSTGGGAVT-R----PINWRYMQK-G-ISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEA 140 (193)
Q Consensus 68 i~~g~~~v~-~----~~~~~~l~~-~-~vV~L~~~~~~~~~Rl~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 140 (193)
|.++ .++ . ...++.+.. . .+|||+||++++.+|+..|. .|+... ....+... ..
T Consensus 90 i~~~--~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~e~l~~R~~~r~--~~~~~~----------~~~~~~~~-----~~ 150 (178)
T 1qhx_A 90 IIDD--VFLGGAAAQERWRSFVGDLDVLWVGVRCDGAVAEGRETARG--DRVAGM----------AAKQAYVV-----HE 150 (178)
T ss_dssp EEEE--CCTTTHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHHHHTS--SSCTTH----------HHHHTTGG-----GT
T ss_pred EEEe--ccccChHHHHHHHHHhcCCcEEEEEEECCHHHHHHHHHhhC--Ccccch----------hhhhchhh-----cc
Confidence 4433 222 1 223344443 3 68899999999999998752 233210 00111000 01
Q ss_pred HhhccceeechhhhhhcccccCCCCCHHHHHHHHHHHH
Q 029455 141 YANANARVSLENIAVKLGHKDVSSLTPVTIAIEALEQI 178 (193)
Q Consensus 141 y~~~~~~i~~~~~~~~~~~iDt~~~~~~~~~~~i~~~~ 178 (193)
|..++.+ |||++.+|+++++.|++.+
T Consensus 151 ~~~~d~~------------idt~~~~~~~~~~~I~~~l 176 (178)
T 1qhx_A 151 GVEYDVE------------VDTTHKESIECAWAIAAHV 176 (178)
T ss_dssp TCCCSEE------------EETTSSCHHHHHHHHHTTC
T ss_pred CCCCcEE------------EECCCCCHHHHHHHHHHHh
Confidence 2224444 5899999999999988654
No 35
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=99.57 E-value=2.1e-14 Score=110.44 Aligned_cols=103 Identities=17% Similarity=0.217 Sum_probs=65.1
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHHHHHh-CC----CCHHHHHHHhcchhhHHHHHHHHHHHhccCCcEEEeCCcee
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQSV-DG----TSVAEIFKLYGEGFFREKETEVLQKLSLMRQLVVSTGGGAV 75 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~~~~~-~g----~~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~vi~~g~~~v 75 (193)
||||||+|+|+.|++++|++++++++++++.. .+ ..+..++ ..|.....++-..++.......+++|..| ++
T Consensus 8 pPGsGKgTqa~~La~~~g~~~istGdllR~~i~~~t~lg~~~~~~~-~~G~lvpd~iv~~lv~~~l~~~~~~ilDG--fP 84 (206)
T 3sr0_A 8 PPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYM-ERGELVPDDLIIALIEEVFPKHGNVIFDG--FP 84 (206)
T ss_dssp STTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHTCHHHHHHHHHH-HHTCCCCHHHHHHHHHHHCCSSSCEEEES--CC
T ss_pred CCCCCHHHHHHHHHHHHCCeEEcHHHHHHHHHHhcChhhhhHHHHH-hcCCcCCHHHHHHHHHHhhccCCceEecC--Cc
Confidence 79999999999999999999999999998654 12 2222333 23433333333333333333333444445 44
Q ss_pred eCHhhHHh----cc-----CCeEEEEECCHHHHHHHHhcc
Q 029455 76 TRPINWRY----MQ-----KGISVWLDVPLEALAQRIAAV 106 (193)
Q Consensus 76 ~~~~~~~~----l~-----~~~vV~L~~~~~~~~~Rl~~~ 106 (193)
........ +. .+.+|+|++|.+++++|+..|
T Consensus 85 Rt~~Qa~~l~~~l~~~~~~~~~vi~l~v~~e~l~~Rl~~R 124 (206)
T 3sr0_A 85 RTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVVIERLSGR 124 (206)
T ss_dssp CSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTE
T ss_pred hhHHHHHHHHhhHHHhccccceeeecCCCHHHHHHHHhCC
Confidence 43322221 21 268999999999999999875
No 36
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=99.57 E-value=5.1e-14 Score=105.72 Aligned_cols=159 Identities=10% Similarity=0.100 Sum_probs=84.2
Q ss_pred CCCCchHHHHHHHHHhcC-----CcEeechHHHHHHh--CCC--CHHHHHHHhcchhhHHHHHH---HHHHHhccCCcEE
Q 029455 1 MMGSGKTTVGKILSGVLG-----YSFFDCDTLIEQSV--DGT--SVAEIFKLYGEGFFREKETE---VLQKLSLMRQLVV 68 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg-----~~~~d~d~~~~~~~--~g~--~~~~~~~~~~~~~~~~~e~~---~~~~l~~~~~~vi 68 (193)
+|||||||+++.|++++| +++++.|++++... .|. +..+++. .....+...+.. .+..+...+. +|
T Consensus 11 ~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~-vi 88 (192)
T 1kht_A 11 VPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLVSDRDQMRK-MDPETQKRIQKMAGRKIAEMAKESP-VA 88 (192)
T ss_dssp CTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHHHHHHHHHTTSCSSGGGGSS-CCHHHHHHHHHHHHHHHHHHHTTSC-EE
T ss_pred CCCCCHHHHHHHHHHHHHhcCcceEEEehHHHHHHHHhccCCCCCHHHHhc-CCHHHHHHHHHHHHHHHHhhccCCe-EE
Confidence 699999999999999999 99999998876543 132 2222210 001111222211 1222333334 45
Q ss_pred EeCCceeeCHhhH------Hhc---cCCeEEEEECCHHHHHH-HHhccCCCCCCccccCCCCChhHHHHHHHHHHHHHHH
Q 029455 69 STGGGAVTRPINW------RYM---QKGISVWLDVPLEALAQ-RIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERG 138 (193)
Q Consensus 69 ~~g~~~v~~~~~~------~~l---~~~~vV~L~~~~~~~~~-Rl~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~r~ 138 (193)
.+|.+.......+ ..+ ..+++|||++|++++.+ |+.... +.|+.... +.. .....+.+.+..+.
T Consensus 89 id~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~rRl~~~~-R~r~~~~~----~~~-~~~~~~~~~~~~~~ 162 (192)
T 1kht_A 89 VDTHSTVSTPKGYLPGLPSWVLNELNPDLIIVVETTGDEILMRRMSDET-RVRDLDTA----STI-EQHQFMNRCAAMSY 162 (192)
T ss_dssp EECCSEEEETTEEEESSCHHHHHHHCCSEEEEEECCHHHHHHHHHTSSS-CSSSCCCH----HHH-HHHHHHHHHHHHHH
T ss_pred EccceeccccccccccCcHHHHhccCCCEEEEEeCCHHHHHHHHhhhcc-cCCCcCCH----HHH-HHHHHHHHHHHHHH
Confidence 5564432211110 112 24789999999999996 897510 12433221 000 01123334444444
Q ss_pred HHHhhccceeechhhhhhcccccCCCCCHHHHHHHHHHHH
Q 029455 139 EAYANANARVSLENIAVKLGHKDVSSLTPVTIAIEALEQI 178 (193)
Q Consensus 139 ~~y~~~~~~i~~~~~~~~~~~iDt~~~~~~~~~~~i~~~~ 178 (193)
+.|..+...+ |++...+++++++.|.+.+
T Consensus 163 ~~~~~~~~~~-----------i~~~~~~~e~~~~~i~~~i 191 (192)
T 1kht_A 163 GVLTGATVKI-----------VQNRNGLLDQAVEELTNVL 191 (192)
T ss_dssp HHHHCCEEEE-----------EECCTTCHHHHHHHHHHHH
T ss_pred HHhcCCcEEE-----------EeCCCCCHHHHHHHHHHHh
Confidence 4443333222 3334456999999998765
No 37
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=99.56 E-value=7.1e-15 Score=109.92 Aligned_cols=146 Identities=16% Similarity=0.120 Sum_probs=77.5
Q ss_pred CCCCchHHHHHHHHHhcCCcEe-echHHHHHHhCCCCHHHHHHHhcchhh------HHHHHHHHHHHhcc-CCcEEEeCC
Q 029455 1 MMGSGKTTVGKILSGVLGYSFF-DCDTLIEQSVDGTSVAEIFKLYGEGFF------REKETEVLQKLSLM-RQLVVSTGG 72 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~-d~d~~~~~~~~g~~~~~~~~~~~~~~~------~~~e~~~~~~l~~~-~~~vi~~g~ 72 (193)
+|||||||+|+.|++.+|++++ +.+.+-.. +.+++. .+...| +......+..+... +..||..+
T Consensus 13 ~~GsGKST~a~~La~~l~~~~i~d~~~~g~~------i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~l~~~g~~vi~d~- 84 (183)
T 2vli_A 13 PFGVGKTHTAHTLHERLPGSFVFEPEEMGQA------LRKLTP-GFSGDPQEHPMWIPLMLDALQYASREAAGPLIVPV- 84 (183)
T ss_dssp CC----CHHHHHHHHHSTTCEECCTHHHHHH------HHHTST-TCCSCGGGSTTHHHHHHHHHHHHHHHCSSCEEEEE-
T ss_pred CCCCCHHHHHHHHHHhcCCCEEEchhhhHHH------HHHhCc-cccchhhhhHHHHHHHHHHHHHHHHhCCCcEEEee-
Confidence 6999999999999999999998 54322111 111111 111111 11112233333332 44455432
Q ss_pred ceeeCH----hhHHhcc-CC---eEEEEECCHHHHHHHHhccCCCCCCccccCCCCChhHHHHHHHHHHHHHHHHHHhhc
Q 029455 73 GAVTRP----INWRYMQ-KG---ISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANA 144 (193)
Q Consensus 73 ~~v~~~----~~~~~l~-~~---~vV~L~~~~~~~~~Rl~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~r~~~y~~~ 144 (193)
.+... ..+..+. .+ ..|||+||++++.+|+..|. .|+. . .+.+...+..+.+. ..+
T Consensus 85 -~~~~~~~~~~~~~~l~~~~~~~~~i~l~~~~e~~~~R~~~R~--~r~~-~-----------~~~~~~~~~~~~~~-~~~ 148 (183)
T 2vli_A 85 -SISDTARHRRLMSGLKDRGLSVHHFTLIAPLNVVLERLRRDG--QPQV-N-----------VGTVEDRLNELRGE-QFQ 148 (183)
T ss_dssp -CCCCHHHHHHHHHHHHHTTCCCEEEEEECCHHHHHHHHHTC------C-C-----------HHHHHHHHHHHTSG-GGC
T ss_pred -eccCHHHHHHHHHHHHhcCCceEEEEEeCCHHHHHHHHHhcc--ccch-h-----------HHHHHHHHHhhccc-ccc
Confidence 12121 2223343 23 34999999999999998742 2441 1 13444444444333 222
Q ss_pred cceeechhhhhhcccccCCCCCHHHHHHHHHHHHHhhhc
Q 029455 145 NARVSLENIAVKLGHKDVSSLTPVTIAIEALEQIEGFLK 183 (193)
Q Consensus 145 ~~~i~~~~~~~~~~~iDt~~~~~~~~~~~i~~~~~~~~~ 183 (193)
+ + |||+..+++++++.|.+.+...+.
T Consensus 149 ~-~------------Id~~~~~~~~~~~~I~~~l~~~~~ 174 (183)
T 2vli_A 149 T-H------------IDTAGLGTQQVAEQIAAQVGLTLA 174 (183)
T ss_dssp S-E------------EECTTCCHHHHHHHHHHHHTCCCC
T ss_pred e-E------------eeCCCCCHHHHHHHHHHHHHHhcC
Confidence 2 3 688889999999999999987664
No 38
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=99.53 E-value=4.2e-14 Score=107.60 Aligned_cols=138 Identities=16% Similarity=0.201 Sum_probs=85.1
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHHHHHhCCCCHHHHHHHhcchhh---------------HHHH-HHHHH------
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFF---------------REKE-TEVLQ------ 58 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~~~~~~g~~~~~~~~~~~~~~~---------------~~~e-~~~~~------ 58 (193)
++||||||+|+.|++.+|++++|+|.+.++.+ +....+++..+|...+ ...+ ...+.
T Consensus 20 ~~GSGKSTva~~L~~~lg~~vid~D~~~~~~~-~~~~~~i~~~fG~~~~~~g~ldr~~L~~~vF~~~~~~~~l~~i~hP~ 98 (192)
T 2grj_A 20 KIGTGKSTVCEILKNKYGAHVVNVDRIGHEVL-EEVKEKLVELFGGSVLEDGKVNRKKLAGIVFESRENLKKLELLVHPL 98 (192)
T ss_dssp STTSSHHHHHHHHHHHHCCEEEEHHHHHHHHH-HHTHHHHHHHHCGGGBSSSSBCHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhcCCEEEECcHHHHHHH-HHHHHHHHHHhChhhcCCCCcCHHHHHHHHhCCHHHHHHHHhhhCHH
Confidence 58999999999999988999999999988776 4455566656654322 1111 00111
Q ss_pred -------HHhccCCcEEEeCCceeeCHhhHHhcc-CCeEEEEECCHHHHHHHHhccCCCCCCccccCCCCChhHHHHHHH
Q 029455 59 -------KLSLMRQLVVSTGGGAVTRPINWRYMQ-KGISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRL 130 (193)
Q Consensus 59 -------~l~~~~~~vi~~g~~~v~~~~~~~~l~-~~~vV~L~~~~~~~~~Rl~~~~~~~R~~~~~~~~~~~~~~~~~~~ 130 (193)
.+......|+..++ .+....+ .. .+.+|||+||++++.+|+.. .++
T Consensus 99 i~~~~~~~~~~~~~~vv~d~p--ll~e~~~--~~~~d~vi~v~a~~e~r~~Rli~----------------------~q~ 152 (192)
T 2grj_A 99 MKKRVQEIINKTSGLIVIEAA--LLKRMGL--DQLCDHVITVVASRETILKRNRE----------------------ADR 152 (192)
T ss_dssp HHHHHHHHHHTCCEEEEEECT--TTTTTTG--GGGCSEEEEEECCHHHHHHHCSS----------------------HHH
T ss_pred HHHHHHHHHHHcCCEEEEEEe--ceeecCh--HHhCCEEEEEECCHHHHHHHHHH----------------------hcC
Confidence 11111334444331 1222212 12 27899999999999999821 111
Q ss_pred HHHHHHHHHHHhhccceeechhhhhhcccccCCCCCHHHHHHHHHHHHHhh
Q 029455 131 STLWEERGEAYANANARVSLENIAVKLGHKDVSSLTPVTIAIEALEQIEGF 181 (193)
Q Consensus 131 ~~~~~~r~~~y~~~~~~i~~~~~~~~~~~iDt~~~~~~~~~~~i~~~~~~~ 181 (193)
..++. ..++.||.+| |++ .+++++.+.|.+.+.++
T Consensus 153 ~~~~~---~~~~~AD~vI------------~n~-~~~~~l~~~v~~~~~~l 187 (192)
T 2grj_A 153 RLKFQ---EDIVPQGIVV------------ANN-STLEDLEKKVEEVMKLV 187 (192)
T ss_dssp HHTTC---TTCCCCSEEE------------ECS-SCHHHHHHHHHHHHHHH
T ss_pred Cchhh---hHHhcCCEEE------------ECC-CCHHHHHHHHHHHHHHH
Confidence 11111 1233478876 544 78999999999888766
No 39
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=99.53 E-value=3.2e-14 Score=112.42 Aligned_cols=30 Identities=27% Similarity=0.439 Sum_probs=28.1
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHHHH
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQ 30 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~~~ 30 (193)
|+||||||+++.|+++||+.++|.+.+++.
T Consensus 35 ~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~ 64 (252)
T 4e22_A 35 PSGAGKGTLCKALAESLNWRLLDSGAIYRV 64 (252)
T ss_dssp CTTSSHHHHHHHHHHHTTCEEEEHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhcCCCcCCCCceehH
Confidence 689999999999999999999999998854
No 40
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=99.53 E-value=3.3e-13 Score=103.60 Aligned_cols=103 Identities=15% Similarity=0.197 Sum_probs=61.3
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHHHHHh-CCCC----HHHHHHHhcchhhHHHHHHHHH-HHhc--cCCcEEEeCC
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQSV-DGTS----VAEIFKLYGEGFFREKETEVLQ-KLSL--MRQLVVSTGG 72 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~~~~~-~g~~----~~~~~~~~~~~~~~~~e~~~~~-~l~~--~~~~vi~~g~ 72 (193)
+|||||||+|+.|++++|++++++|++++... .+.. +.+++.. |..........++. .+.. .+..+|..|
T Consensus 8 ~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~l~~~~~~~~~ildg- 85 (216)
T 3fb4_A 8 LPGAGKGTQAEQIIEKYEIPHISTGDMFRAAIKNGTELGLKAKSFMDQ-GNLVPDEVTIGIVHERLSKDDCQKGFLLDG- 85 (216)
T ss_dssp STTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHTTCHHHHHHHHHHHH-TCCCCHHHHHHHHHHHHTSGGGTTCEEEES-
T ss_pred CCCCCHHHHHHHHHHHhCCcEeeHHHHHHHHHhcCCHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcccCCCcEEEeC-
Confidence 69999999999999999999999999988754 1221 2222222 22112222222222 2322 123344444
Q ss_pred ceeeCHhhHH----hcc-----CCeEEEEECCHHHHHHHHhcc
Q 029455 73 GAVTRPINWR----YMQ-----KGISVWLDVPLEALAQRIAAV 106 (193)
Q Consensus 73 ~~v~~~~~~~----~l~-----~~~vV~L~~~~~~~~~Rl~~~ 106 (193)
++....... .+. .+.+|||++|++++.+|+..|
T Consensus 86 -~p~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R 127 (216)
T 3fb4_A 86 -FPRTVAQADALDSLLTDLGKKLDYVLNIKVEQEELMKRLTGR 127 (216)
T ss_dssp -CCCSHHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHSE
T ss_pred -CCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcC
Confidence 233222111 121 268999999999999999975
No 41
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=99.53 E-value=3.8e-13 Score=102.32 Aligned_cols=145 Identities=19% Similarity=0.174 Sum_probs=85.0
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHHHHHh-----CCCCH------HHHHHHhc----------------chhhHH--
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQSV-----DGTSV------AEIFKLYG----------------EGFFRE-- 51 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~~~~~-----~g~~~------~~~~~~~~----------------~~~~~~-- 51 (193)
++||||||+|+.|++.+|++++|.|.+.+... .|.+. ..+....+ ...++.
T Consensus 10 ~~GsGKst~~~~la~~lg~~~~d~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~ 89 (208)
T 3ake_A 10 PSASGKSSVARRVAAALGVPYLSSGLLYRAAAFLALRAGVDPGDEEGLLALLEGLGVRLLAQAEGNRVLADGEDLTSFLH 89 (208)
T ss_dssp STTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHHTTCEEECCTTCCEEEETTEECGGGSS
T ss_pred CCCCCHHHHHHHHHHhcCCceeccchHHHhhhhhhHhcCCCCCCHHHHHHHHHhCceeeeecCCCceEEECCeeCchhhC
Confidence 58999999999999999999999999886542 14321 11111111 111110
Q ss_pred ----------------HHHHHHHHH--hccCCcEEEeCCceeeCHhhHHhcc-CCeEEEEECCHHHHHHHHhccCCCCCC
Q 029455 52 ----------------KETEVLQKL--SLMRQLVVSTGGGAVTRPINWRYMQ-KGISVWLDVPLEALAQRIAAVGTDSRP 112 (193)
Q Consensus 52 ----------------~e~~~~~~l--~~~~~~vi~~g~~~v~~~~~~~~l~-~~~vV~L~~~~~~~~~Rl~~~~~~~R~ 112 (193)
+...+...+ .. +.+|+ .|.... . ..++ .+++|||+||++++.+|+..+ .
T Consensus 90 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~vi-~g~~~~---~--~~~~~~d~~i~l~a~~e~~~~R~~~r-----~ 157 (208)
T 3ake_A 90 TPEVDRVVSAVARLPGVRAWVNRRLKEVP-PPFVA-EGRDMG---T--AVFPEAAHKFYLTASPEVRAWRRARE-----R 157 (208)
T ss_dssp SHHHHHHHHHHHTCHHHHHHHHHHHHHSC-SCEEE-EESSCC---C--CCCTTCSEEEEEECCHHHHHHHHHHT-----S
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHhc-CCEEE-Ecccee---E--EEecCCcEEEEEECCHHHHHHHHHhh-----c
Confidence 000011100 11 33333 342211 0 1122 268999999999999999873 1
Q ss_pred ccccCCCCChhHHHHHHHHHHHHHHHHHH----hh-ccceeechhhhhhcccccCCCCCHHHHHHHHHHHHH
Q 029455 113 LLHQCESGDAYTEALNRLSTLWEERGEAY----AN-ANARVSLENIAVKLGHKDVSSLTPVTIAIEALEQIE 179 (193)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~y----~~-~~~~i~~~~~~~~~~~iDt~~~~~~~~~~~i~~~~~ 179 (193)
. .. .+.+.+.+.+|.+.| .. ++.. +|||+.++++++++.|.+.++
T Consensus 158 ~-~~----------~~~~~~~~~~R~~~~~~~~~~~ad~~-----------~Id~~~~~~ee~~~~I~~~~~ 207 (208)
T 3ake_A 158 P-QA----------YEEVLRDLLRRDERDKAQSAPAPDAL-----------VLDTGGMTLDEVVAWVLAHIR 207 (208)
T ss_dssp S-SC----------HHHHHHHHHHHHHTC--CCCCCTTCE-----------EEETTTSCHHHHHHHHHHHHH
T ss_pred c-cC----------HHHHHHHHHHHHHHHhhcccCCCCEE-----------EEECCCCCHHHHHHHHHHHHh
Confidence 1 11 244555666666665 22 3412 368888899999999988775
No 42
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=99.53 E-value=4.5e-15 Score=114.37 Aligned_cols=30 Identities=20% Similarity=0.367 Sum_probs=28.3
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHHHH
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQ 30 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~~~ 30 (193)
++||||||+++.|++.+|++++|+|.+++.
T Consensus 11 ~~gsGkst~~~~l~~~~g~~~~~~d~~~~~ 40 (219)
T 2h92_A 11 PAAAGKSTIAKRVASELSMIYVDTGAMYRA 40 (219)
T ss_dssp CTTSSHHHHHHHHHHHTTCEEEEHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhcCCceecCChHHHH
Confidence 689999999999999999999999999875
No 43
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=99.52 E-value=1.4e-13 Score=106.76 Aligned_cols=103 Identities=15% Similarity=0.202 Sum_probs=62.9
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHHHHHhCC-CC----HHHHHHHhcchhhHHHHHHHHHHHhcc--CCcEEEeCCc
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDG-TS----VAEIFKLYGEGFFREKETEVLQKLSLM--RQLVVSTGGG 73 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~~~~~~g-~~----~~~~~~~~~~~~~~~~e~~~~~~l~~~--~~~vi~~g~~ 73 (193)
+|||||||+++.|++.+|++++++|++++....+ .. +.+++. .|...+.+....++...... +..+|..|
T Consensus 8 ~~GsGKsT~a~~La~~lg~~~i~~dd~~r~~~~~~~~~g~~i~~~~~-~g~~~~~~~~~~~i~~~l~~~~g~~vIlDg-- 84 (223)
T 2xb4_A 8 PNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFID-RGDLVPDDITIPMVLETLESKGKDGWLLDG-- 84 (223)
T ss_dssp CTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHTTTTCHHHHHHHHHHT-TTCCCCHHHHHHHHHHHHHHHCTTCEEEES--
T ss_pred CCCCCHHHHHHHHHHHhCCeEEchHHHHHHHHHcCCHHHHHHHHHHH-cCCcCcHHHHHHHHHHHHhcccCCeEEEeC--
Confidence 6999999999999999999999999998876312 21 222221 23222333323333332222 34455444
Q ss_pred eeeCHhhHH----hc-----cCCeEEEEECCHHHHHHHHhcc
Q 029455 74 AVTRPINWR----YM-----QKGISVWLDVPLEALAQRIAAV 106 (193)
Q Consensus 74 ~v~~~~~~~----~l-----~~~~vV~L~~~~~~~~~Rl~~~ 106 (193)
++....... .+ ..+.+|||++|++++.+|+..|
T Consensus 85 ~~~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R 126 (223)
T 2xb4_A 85 FPRNTVQAQKLFEALQEKGMKINFVIEILLPREVAKNRIMGR 126 (223)
T ss_dssp CCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTB
T ss_pred CcCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcc
Confidence 222211111 11 1368999999999999999875
No 44
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=99.51 E-value=3.7e-13 Score=103.38 Aligned_cols=103 Identities=15% Similarity=0.213 Sum_probs=60.6
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHHHHHh-CCCC----HHHHHHHhcchhhHHHHHHHH-HHHhc--cCCcEEEeCC
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQSV-DGTS----VAEIFKLYGEGFFREKETEVL-QKLSL--MRQLVVSTGG 72 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~~~~~-~g~~----~~~~~~~~~~~~~~~~e~~~~-~~l~~--~~~~vi~~g~ 72 (193)
+|||||||+|+.|++++|++++++|++++... .+.. +.+++. .|..........++ ..+.. .+..++..|
T Consensus 8 ~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~l~~~~~~~~~ildg- 85 (216)
T 3dl0_A 8 LPGAGKGTQGERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYID-KGELVPDEVTIGIVKERLGKDDCERGFLLDG- 85 (216)
T ss_dssp STTSSHHHHHHHHHHHSSCCEEEHHHHHHHHHHTTCHHHHHHHHHHT-TTCCCCHHHHHHHHHHHHTSGGGTTCEEEES-
T ss_pred CCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcccccCCEEEeC-
Confidence 69999999999999999999999999888754 1222 122221 12111122212222 22322 122344344
Q ss_pred ceeeCHhhH----Hhcc-----CCeEEEEECCHHHHHHHHhcc
Q 029455 73 GAVTRPINW----RYMQ-----KGISVWLDVPLEALAQRIAAV 106 (193)
Q Consensus 73 ~~v~~~~~~----~~l~-----~~~vV~L~~~~~~~~~Rl~~~ 106 (193)
++...... ..+. .+.+|||++|++++.+|+..|
T Consensus 86 -~p~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R 127 (216)
T 3dl0_A 86 -FPRTVAQAEALEEILEEMGKPIDYVINIQVDKDVLMERLTGR 127 (216)
T ss_dssp -CCCSHHHHHHHHHHHHHTTCCCSEEEEEECCGGGHHHHHHTE
T ss_pred -CCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHCC
Confidence 33322211 1121 258999999999999999975
No 45
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=99.50 E-value=1.1e-13 Score=106.55 Aligned_cols=149 Identities=18% Similarity=0.240 Sum_probs=85.1
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHHHHHh-CC-CCHHHHHHHhcchhhH--------H--------------HHH--
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQSV-DG-TSVAEIFKLYGEGFFR--------E--------------KET-- 54 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~~~~~-~g-~~~~~~~~~~~~~~~~--------~--------------~e~-- 54 (193)
++||||||+++.|++ +|++++|+|.+.+... +| ....+++...|...+. . ++.
T Consensus 12 ~~GSGKST~~~~L~~-lg~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~l~~~~f~~~~~~~~l~~~~ 90 (218)
T 1vht_A 12 GIGSGKSTVANAFAD-LGINVIDADIIARQVVEPGAPALHAIADHFGANMIAADGTLQRRALRERIFANPEEKNWLNALL 90 (218)
T ss_dssp CTTSCHHHHHHHHHH-TTCEEEEHHHHHHHTTSTTCTHHHHHHHHHCGGGBCTTSCBCHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH-cCCEEEEccHHHHHHhcCChHHHHHHHHHhHHHHcCCCCCCCHHHHHHHHhCCHHHHHHHHHhH
Confidence 689999999999998 9999999999887654 22 2334444443322110 0 000
Q ss_pred -HHH-----HHHhc-cCCcEEEeCCceeeCHhhHHhcc-CCeEEEEECCHHHHHHHHhccCCCCCCccccCCCCChhHHH
Q 029455 55 -EVL-----QKLSL-MRQLVVSTGGGAVTRPINWRYMQ-KGISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEA 126 (193)
Q Consensus 55 -~~~-----~~l~~-~~~~vi~~g~~~v~~~~~~~~l~-~~~vV~L~~~~~~~~~Rl~~~~~~~R~~~~~~~~~~~~~~~ 126 (193)
..+ ..+.. ...+++..+ .. +.... +.. .+.+|||++|++++.+|+..| +...
T Consensus 91 ~p~v~~~~~~~~~~~~~~~vi~~~-~~-l~~~~--~~~~~d~vi~l~~~~e~~~~Rl~~R-----~~~~----------- 150 (218)
T 1vht_A 91 HPLIQQETQHQIQQATSPYVLWVV-PL-LVENS--LYKKANRVLVVDVSPETQLKRTMQR-----DDVT----------- 150 (218)
T ss_dssp HHHHHHHHHHHHHHCCSSEEEEEC-TT-TTTTT--GGGGCSEEEEEECCHHHHHHHHHHH-----HTCC-----------
T ss_pred CHHHHHHHHHHHHhcCCCEEEEEe-ee-eeccC--ccccCCEEEEEECCHHHHHHHHHHc-----CCCC-----------
Confidence 000 00111 123444332 11 11111 122 379999999999999999873 2111
Q ss_pred HHHHHHHHHHHHHHH---hhccceeechhhhhhcccccCCCCCHHHHHHHHHHHHHhhhc
Q 029455 127 LNRLSTLWEERGEAY---ANANARVSLENIAVKLGHKDVSSLTPVTIAIEALEQIEGFLK 183 (193)
Q Consensus 127 ~~~~~~~~~~r~~~y---~~~~~~i~~~~~~~~~~~iDt~~~~~~~~~~~i~~~~~~~~~ 183 (193)
.+.+...+..+.+.+ ..+|.+ ||++. +++++++.|.+.+..++.
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~ad~v------------Id~~~-~~~~~~~~I~~~l~~~~~ 197 (218)
T 1vht_A 151 REHVEQILAAQATREARLAVADDV------------IDNNG-APDAIASDVARLHAHYLQ 197 (218)
T ss_dssp HHHHHHHHHHSCCHHHHHHHCSEE------------EECSS-CTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCChHHHHHhCCEE------------EECCC-CHHHHHHHHHHHHHHHHH
Confidence 122333333322222 236655 47765 999999999888876653
No 46
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=99.49 E-value=8.8e-13 Score=101.36 Aligned_cols=103 Identities=17% Similarity=0.203 Sum_probs=63.2
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHHHHHh-C----CCCHHHHHHHhcchhhHHHHHHHHHH-Hhcc--CCcEEEeCC
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQSV-D----GTSVAEIFKLYGEGFFREKETEVLQK-LSLM--RQLVVSTGG 72 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~~~~~-~----g~~~~~~~~~~~~~~~~~~e~~~~~~-l~~~--~~~vi~~g~ 72 (193)
+|||||||+|+.|++.+|++++++|+++++.. . |..+.+++.. |..........++.. +... ...+|..|
T Consensus 8 ~~GsGKsT~a~~L~~~~g~~~i~~d~~~r~~~~~~~~~g~~i~~~~~~-g~~~~~~~~~~~i~~~l~~~~~~~~~i~dg- 85 (214)
T 1e4v_A 8 APVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDA-GKLVTDELVIALVKERIAQEDCRNGFLLDG- 85 (214)
T ss_dssp STTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHHTCTTTGGGHHHHHH-TCCCCHHHHHHHHHHHHTSGGGGGCEEEES-
T ss_pred CCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHHcCChHHHHHHHHHHC-CCcCCHHHHHHHHHHHHhccccCCCEEEeC-
Confidence 69999999999999999999999999988742 1 3344555533 322222222222322 2221 12344444
Q ss_pred ceeeCHhhHHhcc-----CCeEEEEECCHHHHHHHHhcc
Q 029455 73 GAVTRPINWRYMQ-----KGISVWLDVPLEALAQRIAAV 106 (193)
Q Consensus 73 ~~v~~~~~~~~l~-----~~~vV~L~~~~~~~~~Rl~~~ 106 (193)
++........+. .+.+|||++|++++++|+..|
T Consensus 86 -~~~~~~~~~~l~~~~~~~d~vi~l~~~~e~~~~R~~~R 123 (214)
T 1e4v_A 86 -FPRTIPQADAMKEAGINVDYVLEFDVPDELIVDRIVGR 123 (214)
T ss_dssp -CCCSHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHTE
T ss_pred -CCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHCC
Confidence 222222222221 268999999999999999864
No 47
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=99.49 E-value=1.8e-14 Score=113.74 Aligned_cols=164 Identities=15% Similarity=0.102 Sum_probs=84.1
Q ss_pred CCCCchHHHHHHHHHhcCCc----------EeechHHHHHHhCCCCHHHHHHHhcchhhH-------HHHHHHHHHHhc-
Q 029455 1 MMGSGKTTVGKILSGVLGYS----------FFDCDTLIEQSVDGTSVAEIFKLYGEGFFR-------EKETEVLQKLSL- 62 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~----------~~d~d~~~~~~~~g~~~~~~~~~~~~~~~~-------~~e~~~~~~l~~- 62 (193)
+|||||||+|+.|++.+|++ ++++|++++... ...+. ....|...|. ......+..+..
T Consensus 30 ~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~~~~-~~~~~--~~~~g~~~f~~~~~~d~~~l~~~L~~l~~~ 106 (252)
T 1uj2_A 30 GTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVLT-SEQKA--KALKGQFNFDHPDAFDNELILKTLKEITEG 106 (252)
T ss_dssp STTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBCCCC-HHHHH--HHHTTCSCTTSGGGBCHHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccccccC-hhhhh--hhccCCCCCCCcchhhHHHHHHHHHHHHcC
Confidence 68999999999999999998 799999874211 00000 1111211110 001123344421
Q ss_pred -----------------------cCCcEEEeCCceeeCHhhHHhccCCeEEEEECCHHHHHHHHhccCCCCCCccccCCC
Q 029455 63 -----------------------MRQLVVSTGGGAVTRPINWRYMQKGISVWLDVPLEALAQRIAAVGTDSRPLLHQCES 119 (193)
Q Consensus 63 -----------------------~~~~vi~~g~~~v~~~~~~~~l~~~~vV~L~~~~~~~~~Rl~~~~~~~R~~~~~~~~ 119 (193)
....||.+|......+..... .+.+|||++|++++++|+..|....|+. .
T Consensus 107 ~~v~~~~~d~~~~~~~~~~~~~~~~~~vIveG~~~~~~~~~~~~--~d~vi~l~~~~e~~~~R~~~R~~~~rg~--~--- 179 (252)
T 1uj2_A 107 KTVQIPVYDFVSHSRKEETVTVYPADVVLFEGILAFYSQEVRDL--FQMKLFVDTDADTRLSRRVLRDISERGR--D--- 179 (252)
T ss_dssp CCEEEEEEETTTTEEEEEEEEECCCSEEEEECTTTTSSHHHHHH--CSEEEEEECCHHHHHHHHHHHHHHHSCC--C---
T ss_pred CeeecCccccccccCCCceeeeCCCcEEEEeeeccccCHHHHHh--cCeeEEEeCCHHHHHHHHHHHHHhhhCC--C---
Confidence 123455555321112222211 2789999999999999998641000111 0
Q ss_pred CChhHHHHHHHHHHHHH-HH----HHHhhccceeechhhhhhcccccCCCCCHHHHHHHHHHHHHhhhcccc
Q 029455 120 GDAYTEALNRLSTLWEE-RG----EAYANANARVSLENIAVKLGHKDVSSLTPVTIAIEALEQIEGFLKEED 186 (193)
Q Consensus 120 ~~~~~~~~~~~~~~~~~-r~----~~y~~~~~~i~~~~~~~~~~~iDt~~~~~~~~~~~i~~~~~~~~~~~~ 186 (193)
.++..+.+...... .. +.+..+|.+|.. .||| ..+++++.+.|.+.+...++...
T Consensus 180 ---~e~i~~~~~~~~~~~~~~~i~~~~~~ad~vI~~--------~id~-~~s~e~v~~~I~~~l~~~~~~~~ 239 (252)
T 1uj2_A 180 ---LEQILSQYITFVKPAFEEFCLPTKKYADVIIPR--------GADN-LVAINLIVQHIQDILNGGPSKRQ 239 (252)
T ss_dssp ---HHHHHHHHHHTHHHHHHHHTGGGGGGCSEEEET--------GGGC-HHHHHHHHHHHHHHHHC------
T ss_pred ---HHHHHHHHHHhccHHHHHHhhhhhhcCcEEEec--------CCCC-hhHHHHHHHHHHHHHccchhhhh
Confidence 00122222221100 00 122336666521 2587 68999999999999887765443
No 48
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=99.49 E-value=4.6e-13 Score=105.23 Aligned_cols=103 Identities=19% Similarity=0.222 Sum_probs=61.2
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHHHHHhC-CCC----HHHHHHHhcchhhHHHHHHHHHH-Hhc--cCCcEEEeCC
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVD-GTS----VAEIFKLYGEGFFREKETEVLQK-LSL--MRQLVVSTGG 72 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~~~~~~-g~~----~~~~~~~~~~~~~~~~e~~~~~~-l~~--~~~~vi~~g~ 72 (193)
+|||||||+|+.|++++|++++++|++++.... |.. +.+++.. |..........++.. +.. ....++..|
T Consensus 37 ~~GsGKsT~a~~L~~~~g~~~is~~~~~r~~~~~~~~~g~~i~~~~~~-g~~~~~~~~~~~~~~~l~~~~~~~~~ildg- 114 (243)
T 3tlx_A 37 APGSGKGTQSLNLKKSHCYCHLSTGDLLREAAEKKTELGLKIKNIINE-GKLVDDQMVLSLVDEKLKTPQCKKGFILDG- 114 (243)
T ss_dssp CTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHTTSSSHHHHHHHHHHHT-TCCCCHHHHHHHHHHHTTSGGGSSEEEEES-
T ss_pred CCCCCHHHHHHHHHHHhCCeEEecHHHHHHHHhccchHHHHHHHHHhc-CCCCcHHHHHHHHHHHHhcccccCCEEecC-
Confidence 699999999999999999999999999887542 222 2222221 221111221222222 222 123344444
Q ss_pred ceeeCHhhHHh----cc-----CCeEEEEECCHHHHHHHHhcc
Q 029455 73 GAVTRPINWRY----MQ-----KGISVWLDVPLEALAQRIAAV 106 (193)
Q Consensus 73 ~~v~~~~~~~~----l~-----~~~vV~L~~~~~~~~~Rl~~~ 106 (193)
++........ +. .+.+|+|++|++++++|+..|
T Consensus 115 -~p~~~~q~~~l~~~l~~~~~~~d~vi~l~~p~e~~~~Rl~~R 156 (243)
T 3tlx_A 115 -YPRNVKQAEDLNKLLQKNQTKLDGVFYFNVPDEVLVNRISGR 156 (243)
T ss_dssp -CCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTE
T ss_pred -CCCcHHHHHHHHHHHHHcCCCCceEEEEeCCHHHHHHHHHcC
Confidence 2322221111 21 368999999999999999975
No 49
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=99.49 E-value=7.3e-14 Score=106.38 Aligned_cols=148 Identities=18% Similarity=0.192 Sum_probs=85.0
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHHHHHhC--CCCHHHHHHHhcchhhH----------------------HHH---
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVD--GTSVAEIFKLYGEGFFR----------------------EKE--- 53 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~~~~~~--g~~~~~~~~~~~~~~~~----------------------~~e--- 53 (193)
++||||||+++.|++ +|++++++|++++..+. +..+..++..+|...++ ...
T Consensus 9 ~~GsGKSTl~~~L~~-~g~~~i~~d~~~~~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~~~f~~~~~~~~l~~l~ 87 (204)
T 2if2_A 9 NIGCGKSTVAQMFRE-LGAYVLDADKLIHSFYRKGHPVYEEVVKTFGKGILDEEGNIDRKKLADIVFKDEEKLRKLEEIT 87 (204)
T ss_dssp CTTSSHHHHHHHHHH-TTCEEEEHHHHHHGGGSSSSHHHHHHHHHHCTTTTEETTEECHHHHHHTTSSCHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHH-CCCEEEEccHHHHHHhcCCHHHHHHHHHHhCHHhhCCCCcCCHHHHHHHHhCCHHHHHHHHHhh
Confidence 689999999999999 99999999999876541 12233444444432110 000
Q ss_pred HH-----HHHHHhc-cC-CcEEEeCCceeeCHhhHHhccCCeEEEEECCHHHHHHHHhccCCCCCCccccCCCCChhHHH
Q 029455 54 TE-----VLQKLSL-MR-QLVVSTGGGAVTRPINWRYMQKGISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEA 126 (193)
Q Consensus 54 ~~-----~~~~l~~-~~-~~vi~~g~~~v~~~~~~~~l~~~~vV~L~~~~~~~~~Rl~~~~~~~R~~~~~~~~~~~~~~~ 126 (193)
.. +...+.. .+ ..+|.++. .+....+..+ .+.+|||+||++++.+|+.. |+. .
T Consensus 88 ~~~v~~~~~~~~~~~~~~~~vive~~--~l~~~~~~~~-~~~~i~l~~~~e~~~~Rl~~-----R~~-~----------- 147 (204)
T 2if2_A 88 HRALYKEIEKITKNLSEDTLFILEAS--LLVEKGTYKN-YDKLIVVYAPYEVCKERAIK-----RGM-S----------- 147 (204)
T ss_dssp HHHHTTTHHHHHHHSCTTCCEEEECS--CSTTTTCGGG-SSEEEEECCCHHHHHHHHHH-----TCC-C-----------
T ss_pred CHHHHHHHHHHHHhccCCCEEEEEcc--ccccCCchhh-CCEEEEEECCHHHHHHHHHH-----cCC-C-----------
Confidence 00 0000111 12 45555542 1222222111 37899999999999999986 321 1
Q ss_pred HHHHHHHHHHHHH---HHhhccceeechhhhhhcccccCCCCCHHHHHHHHHHHHHhhh
Q 029455 127 LNRLSTLWEERGE---AYANANARVSLENIAVKLGHKDVSSLTPVTIAIEALEQIEGFL 182 (193)
Q Consensus 127 ~~~~~~~~~~r~~---~y~~~~~~i~~~~~~~~~~~iDt~~~~~~~~~~~i~~~~~~~~ 182 (193)
.+.+.+.+..+.+ .+..++.+ ||++ .+++++++.|.+.+....
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~ad~v------------Id~~-~~~~~~~~~i~~~l~~~~ 193 (204)
T 2if2_A 148 EEDFERRWKKQMPIEEKVKYADYV------------IDNS-GSIEETYKQVKKVYEELT 193 (204)
T ss_dssp HHHHHHHHTTSCCHHHHGGGCSEE------------CCCS-SCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCChhHHHhcCCEE------------EECC-CCHHHHHHHHHHHHHHHh
Confidence 1222222222221 22335654 5776 799999999999987654
No 50
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=99.49 E-value=4.7e-13 Score=100.61 Aligned_cols=155 Identities=23% Similarity=0.242 Sum_probs=83.0
Q ss_pred CCCCchHHHHHHHHHhc---CCcEeechHHHHHHhCCCCHHHHHHHhcch------hhHHHH-----HHHHHHHhccCCc
Q 029455 1 MMGSGKTTVGKILSGVL---GYSFFDCDTLIEQSVDGTSVAEIFKLYGEG------FFREKE-----TEVLQKLSLMRQL 66 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l---g~~~~d~d~~~~~~~~g~~~~~~~~~~~~~------~~~~~e-----~~~~~~l~~~~~~ 66 (193)
+|||||||+++.|++++ |++++++|....... |..+.+++.. |.. .|...+ ...+......+..
T Consensus 8 ~~GsGKsT~~~~L~~~l~~~g~~~i~~d~~~~~~~-~~~i~~~~~~-g~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~~~ 85 (195)
T 2pbr_A 8 IDGSGKTTQAKKLYEYLKQKGYFVSLYREPGGTKV-GEVLREILLT-EELDERTELLLFEASRSKLIEEKIIPDLKRDKV 85 (195)
T ss_dssp STTSCHHHHHHHHHHHHHHTTCCEEEEESSCSSHH-HHHHHHHHHH-SCCCHHHHHHHHHHHHHHHHHHTHHHHHHTTCE
T ss_pred CCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCCch-HHHHHHHHcC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE
Confidence 68999999999999998 999999874110000 1111222221 211 111111 0112222334455
Q ss_pred EEEe----------CCceeeCHhhHH----hc----cCCeEEEEECCHHHHHHHHhccCCCCCCccccCCCCChhHHHHH
Q 029455 67 VVST----------GGGAVTRPINWR----YM----QKGISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALN 128 (193)
Q Consensus 67 vi~~----------g~~~v~~~~~~~----~l----~~~~vV~L~~~~~~~~~Rl~~~~~~~R~~~~~~~~~~~~~~~~~ 128 (193)
|+.. |.+......... .+ ..+.+|||+||++++.+|+.+ |+.... . +..+
T Consensus 86 vi~dr~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~-----r~~~~~----~---~~~~ 153 (195)
T 2pbr_A 86 VILDRFVLSTIAYQGYGKGLDVEFIKNLNEFATRGVKPDITLLLDIPVDIALRRLKE-----KNRFEN----K---EFLE 153 (195)
T ss_dssp EEEESCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHT-----TTCCCC----H---HHHH
T ss_pred EEECcchhHHHHHccccCCCCHHHHHHHHHHhhcCCCCCEEEEEeCCHHHHHHHhhc-----cCccch----H---HHHH
Confidence 6654 222222222111 12 237899999999999999985 222211 1 2234
Q ss_pred HHHHHHHHHHHHHhhccceeechhhhhhcccccCCCCCHHHHHHHHHHHHHhhhc
Q 029455 129 RLSTLWEERGEAYANANARVSLENIAVKLGHKDVSSLTPVTIAIEALEQIEGFLK 183 (193)
Q Consensus 129 ~~~~~~~~r~~~y~~~~~~i~~~~~~~~~~~iDt~~~~~~~~~~~i~~~~~~~~~ 183 (193)
.+...+.+....| +..+ +||+ +.+++++++.|.+.+.+.+.
T Consensus 154 ~~~~~~~~~~~~~---~~~~----------~Id~-~~~~~~~~~~i~~~l~~~l~ 194 (195)
T 2pbr_A 154 KVRKGFLELAKEE---ENVV----------VIDA-SGEEEEVFKEILRALSGVLR 194 (195)
T ss_dssp HHHHHHHHHHHHS---TTEE----------EEET-TSCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhhC---CCEE----------EEEC-CCCHHHHHHHHHHHHHHHhC
Confidence 4444443332222 2111 3686 58999999999999887653
No 51
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=99.48 E-value=3.2e-14 Score=111.20 Aligned_cols=30 Identities=30% Similarity=0.598 Sum_probs=28.3
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHHHH
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQ 30 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~~~ 30 (193)
++||||||+++.|++.||++++|+|.+++.
T Consensus 24 ~~gsGKst~~~~l~~~lg~~~~d~d~~~~~ 53 (236)
T 1q3t_A 24 PASSGKSTVAKIIAKDFGFTYLDTGAMYRA 53 (236)
T ss_dssp SSCSSHHHHHHHHHHHHCCEEEEHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHcCCceecCCCeeEc
Confidence 689999999999999999999999999875
No 52
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=99.47 E-value=1.1e-13 Score=104.13 Aligned_cols=102 Identities=19% Similarity=0.124 Sum_probs=57.9
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHHHHHhC--CCCHHHHHHHhcchhhHHHHHHHHHHHhccCCcEEEeCCceeeCH
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVD--GTSVAEIFKLYGEGFFREKETEVLQKLSLMRQLVVSTGGGAVTRP 78 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~~~~~~--g~~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~vi~~g~~~v~~~ 78 (193)
+|||||||+++.|++.+|+++++.|.+...... +..-.+++.......+..+. ..+......+..||..+.. ..
T Consensus 13 ~~GsGKST~~~~L~~~l~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~g~~vi~d~~~---~~ 88 (193)
T 2rhm_A 13 HPATGKTTLSQALATGLRLPLLSKDAFKEVMFDGLGWSDREWSRRVGATAIMMLY-HTAATILQSGQSLIMESNF---RV 88 (193)
T ss_dssp STTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHHHCCCSHHHHHHHHHHHHHHHH-HHHHHHHHTTCCEEEEECC---CH
T ss_pred CCCCCHHHHHHHHHHHcCCeEecHHHHHHHHHHhcCccchHHHHHhhHHHHHHHH-HHHHHHHhCCCeEEEecCC---CC
Confidence 699999999999999999999999998765431 11101111111111111111 1122223333444544421 11
Q ss_pred h----hHHhcc-----CCeEEEEECCHHHHHHHHhcc
Q 029455 79 I----NWRYMQ-----KGISVWLDVPLEALAQRIAAV 106 (193)
Q Consensus 79 ~----~~~~l~-----~~~vV~L~~~~~~~~~Rl~~~ 106 (193)
. .+..+. ...+|||++|++++.+|+.+|
T Consensus 89 ~~~~~~~~~l~~~~~~~~~~v~l~~~~e~~~~R~~~R 125 (193)
T 2rhm_A 89 DLDTERMQNLHTIAPFTPIQIRCVASGDVLVERILSR 125 (193)
T ss_dssp HHHHHHHHHHHHHSCCEEEEEEEECCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHHHHh
Confidence 1 111132 137999999999999999875
No 53
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=99.47 E-value=8.5e-13 Score=103.15 Aligned_cols=160 Identities=18% Similarity=0.220 Sum_probs=86.7
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHHHHHh-----CCCCHHH------HHHHhc------------------------
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQSV-----DGTSVAE------IFKLYG------------------------ 45 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~~~~~-----~g~~~~~------~~~~~~------------------------ 45 (193)
||||||||+++.|++.+|+++++.|.+++... .|.++.+ ......
T Consensus 17 ~~GsGKsTla~~la~~lg~~~~d~g~~~r~~~~~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~v~l~g~~v~~~ir 96 (233)
T 3r20_A 17 PAGTGKSSVSRGLARALGARYLDTGAMYRIATLAVLRAGADLTDPAAIEKAAADAEIGVGSDPDVDAAFLAGEDVSSEIR 96 (233)
T ss_dssp CTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEECCCTTSCCEEETTEECTTGGG
T ss_pred CCCCCHHHHHHHHHHHhCCCcccCCcHHHHHHHHHHHcCCCchhhHHHHHHHHhCCEEEeecCCCcEEEECCeehhhhhc
Confidence 69999999999999999999999999876532 2443221 111000
Q ss_pred -------------chhhHHHHHHHHHHHhcc-CCcEEEeC-CceeeCHhhHHhccCCeEEEEECCHHHHHHHHhccCC-C
Q 029455 46 -------------EGFFREKETEVLQKLSLM-RQLVVSTG-GGAVTRPINWRYMQKGISVWLDVPLEALAQRIAAVGT-D 109 (193)
Q Consensus 46 -------------~~~~~~~e~~~~~~l~~~-~~~vi~~g-~~~v~~~~~~~~l~~~~vV~L~~~~~~~~~Rl~~~~~-~ 109 (193)
....++.-....+.+... +++|+... .+.+..+. .++.|||++|++++.+|..+... +
T Consensus 97 ~~~v~~~~s~va~~~~vr~~l~~~qr~~a~~~~~~V~~GRd~gt~V~pd------a~lkifl~A~~e~Ra~Rr~~~l~~~ 170 (233)
T 3r20_A 97 GDAVTGAVSAVSAVPAVRTRLVDIQRKLATEGGRVVVEGRDIGTVVLPD------ADVKIFLTASAEERARRRNAQNVAN 170 (233)
T ss_dssp SHHHHHHHHHHHTCHHHHHHHHHHHHHHHTSSSCEEEEESSCCCCCCTT------CSEEEEEECCHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHhcchHHHHHHHHHHHHHHHhcCcEEEecccceeEEcCC------CCEEEEEECCHHHHHHHHHHHHHhc
Confidence 000011111122334444 56666422 23333332 15899999999999999875200 0
Q ss_pred CCCccccCCCCChhHHHHHHHHHHHHHHHHHHhhccceeechhhhhhc--ccccCCCCCHHHHHHHHHHHHHhhh
Q 029455 110 SRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVSLENIAVKL--GHKDVSSLTPVTIAIEALEQIEGFL 182 (193)
Q Consensus 110 ~R~~~~~~~~~~~~~~~~~~~~~~~~~r~~~y~~~~~~i~~~~~~~~~--~~iDt~~~~~~~~~~~i~~~~~~~~ 182 (193)
..+. .+++..+.+.+.-..+...|- +++. .+. ++||||.++++++++.|.+.+++.+
T Consensus 171 ~~~~--------~~~~~~~~i~~rD~~d~~r~~-~pl~-------~~~dal~IDTs~l~iee~v~~I~~~i~~~~ 229 (233)
T 3r20_A 171 GLPD--------DYATVLADVQRRDHLDSTRPV-SPLR-------AADDALVVDTSDMDQAQVIAHLLDLVTAQA 229 (233)
T ss_dssp TCCC--------CHHHHHHHHHHHHHHHHHSCS-SCCS-------CCTTSEEEECTTSCHHHHHHHHHHHC----
T ss_pred cCCC--------CHHHHHHHHHHHHHhhhhccc-cccc-------cccCcEEEECCCCCHHHHHHHHHHHHHHhh
Confidence 1111 122333444333221111111 1111 111 3689999999999999999887654
No 54
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=99.47 E-value=3.9e-13 Score=104.73 Aligned_cols=102 Identities=16% Similarity=0.221 Sum_probs=65.6
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHHHHHh-CCC----CHHHHHHHhcchhhHHHHHHHHHH-Hhc---cCCcEEEeC
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQSV-DGT----SVAEIFKLYGEGFFREKETEVLQK-LSL---MRQLVVSTG 71 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~~~~~-~g~----~~~~~~~~~~~~~~~~~e~~~~~~-l~~---~~~~vi~~g 71 (193)
+|||||||+|+.|++++|++++++++++++.. .+. .+.+++. .|.....++...++.+ +.. ...+|+ .|
T Consensus 16 ~pGsGKsT~a~~L~~~~g~~~is~gdllR~~~~~~t~lG~~i~~~~~-~G~lvpdei~~~ll~~~l~~~~~~~g~IL-DG 93 (230)
T 3gmt_A 16 APGAGKGTQANFIKEKFGIPQISTGDMLRAAVKAGTPLGVEAKTYMD-EGKLVPDSLIIGLVKERLKEADCANGYLF-DG 93 (230)
T ss_dssp CTTSCHHHHHHHHHHHHTCCEECHHHHHHHHHHTTCHHHHHHHHHHT-TTCCCCHHHHHHHHHHHHHSGGGTTCEEE-ES
T ss_pred CCCCCHHHHHHHHHHHhCCCeeechHHHHHhccCCChHHHHHHHHHh-hccccccHHHHHHHHHHHhCcccCCCeEe-cC
Confidence 69999999999999999999999999988753 222 2233332 2433333333333333 322 234555 34
Q ss_pred CceeeCHhhHHhcc-----CCeEEEEECCHHHHHHHHhcc
Q 029455 72 GGAVTRPINWRYMQ-----KGISVWLDVPLEALAQRIAAV 106 (193)
Q Consensus 72 ~~~v~~~~~~~~l~-----~~~vV~L~~~~~~~~~Rl~~~ 106 (193)
++......+.|. .+.+|||++|++++++|+..|
T Consensus 94 --fPRt~~Qa~~L~~~~~~~d~VI~Ldvp~e~l~~Rl~~R 131 (230)
T 3gmt_A 94 --FPRTIAQADAMKEAGVAIDYVLEIDVPFSEIIERMSGR 131 (230)
T ss_dssp --CCCSHHHHHHHHHTTCCCSEEEEECCCHHHHHHHHHTE
T ss_pred --CCCcHHHHHHHHHhCCCccEEEEEeCCHHHHHHHHHcC
Confidence 443333222332 268999999999999999986
No 55
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=99.46 E-value=1.3e-13 Score=109.35 Aligned_cols=148 Identities=15% Similarity=0.146 Sum_probs=84.1
Q ss_pred CCCCchHHHHHHHHHh---cCCcEe--echHHHHHHhCCCCHHHHHHHhcchhhHHHHHHHHHHHhccCCcEEEeCCcee
Q 029455 1 MMGSGKTTVGKILSGV---LGYSFF--DCDTLIEQSVDGTSVAEIFKLYGEGFFREKETEVLQKLSLMRQLVVSTGGGAV 75 (193)
Q Consensus 1 ~~GsGKSTia~~La~~---lg~~~~--d~d~~~~~~~~g~~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~vi~~g~~~v 75 (193)
+|||||||+|+.|++. +|++++ +.|.+..... +. ...++..++......+...... ..+|..+ ..
T Consensus 12 ~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~~~l~-~~------~~~~e~~~~~~~~~~i~~~l~~-~~vIiD~--~~ 81 (260)
T 3a4m_A 12 LPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRESFP-VW------KEKYEEFIKKSTYRLIDSALKN-YWVIVDD--TN 81 (260)
T ss_dssp CTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHHTTSS-SC------CGGGHHHHHHHHHHHHHHHHTT-SEEEECS--CC
T ss_pred CCCCCHHHHHHHHHHHHHhCCCEEEEECchHHHHHHh-hh------hHHHHHHHHHHHHHHHHHHhhC-CEEEEeC--Cc
Confidence 6999999999999998 789888 8888764433 31 1123333444333444444444 4455444 23
Q ss_pred eCHhhHHhc----c----CCeEEEEECCHHHHHHHHhccCCCCCCccccCCCCChhHHHHHHHHHHHHHHHHHHhhccce
Q 029455 76 TRPINWRYM----Q----KGISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANAR 147 (193)
Q Consensus 76 ~~~~~~~~l----~----~~~vV~L~~~~~~~~~Rl~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~r~~~y~~~~~~ 147 (193)
.....+..+ . ...+|||+||++++.+|+.+| +++. . .+.+..++. .|......
T Consensus 82 ~~~~~~~~l~~~a~~~~~~~~vi~l~~~~e~~~~R~~~R---~~~~------~------~~~l~~~~~----~~e~~~~~ 142 (260)
T 3a4m_A 82 YYNSMRRDLINIAKKYNKNYAIIYLKASLDVLIRRNIER---GEKI------P------NEVIKKMYE----KFDEPGKK 142 (260)
T ss_dssp CSHHHHHHHHHHHHHTTCEEEEEEEECCHHHHHHHHHHT---TCSS------C------HHHHHHHHH----HCCCTTSS
T ss_pred ccHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHHhC---CCCC------C------HHHHHHHHH----HhcCcccc
Confidence 333333222 1 258999999999999999873 2221 1 122333322 12211000
Q ss_pred eechhhhhhcccccCCC-CCHHHHHHHHHHHHHh
Q 029455 148 VSLENIAVKLGHKDVSS-LTPVTIAIEALEQIEG 180 (193)
Q Consensus 148 i~~~~~~~~~~~iDt~~-~~~~~~~~~i~~~~~~ 180 (193)
. .-...+++||++. .+++++++.|.+.+..
T Consensus 143 ~---~~~~~~~~Id~~~~~~~~ei~~~I~~~l~~ 173 (260)
T 3a4m_A 143 Y---KWDEPFLIIDTTKDIDFNEIAKKLIEKSKE 173 (260)
T ss_dssp C---GGGCCSEEEETTSCCCHHHHHHHHHHHHTS
T ss_pred C---CCCCCEEEEeCCCCCCHHHHHHHHHhcccC
Confidence 0 0001122468876 6899999999888754
No 56
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=99.46 E-value=4.3e-12 Score=95.12 Aligned_cols=159 Identities=11% Similarity=0.115 Sum_probs=83.5
Q ss_pred CCCCchHHHHHHHHHhcC-----CcEeechHHHHHHh-C-CCCH-HHHHHHhcch----hhHHHHHHHHHHHh--ccCCc
Q 029455 1 MMGSGKTTVGKILSGVLG-----YSFFDCDTLIEQSV-D-GTSV-AEIFKLYGEG----FFREKETEVLQKLS--LMRQL 66 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg-----~~~~d~d~~~~~~~-~-g~~~-~~~~~~~~~~----~~~~~e~~~~~~l~--~~~~~ 66 (193)
+|||||||+++.|+++++ +.+++.|+++.+.. + +... .+-+...... ........ +.... ..+..
T Consensus 9 ~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~l~~~~~~~ 87 (194)
T 1nks_A 9 IPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDRDEMRKLSVEKQKKLQIDAAKG-IAEEARAGGEGY 87 (194)
T ss_dssp CTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHTTTSCSSHHHHTTSCHHHHHHHHHHHHHH-HHHHHHHTCSSE
T ss_pred CCCCCHHHHHHHHHHHHHhcCceEEEEECChHHHHHHHhcccccchhhhhcCCHHHHHHHHHHHHHH-HHHHhhccCCCE
Confidence 699999999999999998 88999888776433 1 2110 0100000000 00001111 22222 34455
Q ss_pred EEEeCCceeeC---------HhhHHhccCCeEEEEECCHHHHHHH-HhccCCCCC-CccccCCCCChhHHHHHHHHHHHH
Q 029455 67 VVSTGGGAVTR---------PINWRYMQKGISVWLDVPLEALAQR-IAAVGTDSR-PLLHQCESGDAYTEALNRLSTLWE 135 (193)
Q Consensus 67 vi~~g~~~v~~---------~~~~~~l~~~~vV~L~~~~~~~~~R-l~~~~~~~R-~~~~~~~~~~~~~~~~~~~~~~~~ 135 (193)
||..+.+.+.. ......+..+.+|||++|++++.+| +... .+.| +.... +.. .....+.+.+.
T Consensus 88 vi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~l~~~~~~~~~rr~~~~-~R~~~~~~~~----~~~-~~~~~~~~~~~ 161 (194)
T 1nks_A 88 LFIDTHAVIRTPSGYLPGLPSYVITEINPSVIFLLEADPKIILSRQKRDT-TRNRNDYSDE----SVI-LETINFARYAA 161 (194)
T ss_dssp EEEEECSEEEETTEEEESSCHHHHHHHCCSEEEEEECCHHHHHHHHHHCT-TTCCCCCCSH----HHH-HHHHHHHHHHH
T ss_pred EEECCchhhccccccccCCCHHHHHhcCCCEEEEEeCCHHHHHHHHHhhc-ccCCCCccCH----HHH-HHHHHHHHHHH
Confidence 66655322211 1111222347899999999998866 6540 0123 22211 000 11233555555
Q ss_pred HHHHHHhhccceeechhhhhhcccc-cCCCCCHHHHHHHHHHHH
Q 029455 136 ERGEAYANANARVSLENIAVKLGHK-DVSSLTPVTIAIEALEQI 178 (193)
Q Consensus 136 ~r~~~y~~~~~~i~~~~~~~~~~~i-Dt~~~~~~~~~~~i~~~~ 178 (193)
++...|..++.++ | |+ ..+++++++.|.+.+
T Consensus 162 ~~~~~~~~~~~~~-----------I~d~-~~~~e~v~~~I~~~l 193 (194)
T 1nks_A 162 TASAVLAGSTVKV-----------IVNV-EGDPSIAANEIIRSM 193 (194)
T ss_dssp HHHHHHHTCEEEE-----------EECC-SSCHHHHHHHHHHHH
T ss_pred HHHHHhcCCcEEE-----------EeCC-CCCHHHHHHHHHHHh
Confidence 5544453333333 6 65 589999999998765
No 57
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=99.45 E-value=1.4e-13 Score=104.39 Aligned_cols=150 Identities=21% Similarity=0.269 Sum_probs=83.6
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHHHHHhCCCCHHHHHHHhcchhh----------H-----------HHH---H--
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFF----------R-----------EKE---T-- 54 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~~~~~~g~~~~~~~~~~~~~~~----------~-----------~~e---~-- 54 (193)
++||||||+|+.|++. |++++|+|.+++....|.+ .+++..+ +..| . .++ .
T Consensus 16 ~~GsGKST~~~~La~~-g~~~id~d~~~~~~~~~~~-~~i~~~~-~~~~~~g~i~~~~l~~~~~~~~~~~~~l~~~~~~~ 92 (203)
T 1uf9_A 16 NIGSGKSTVAALLRSW-GYPVLDLDALAARARENKE-EELKRLF-PEAVVGGRLDRRALARLVFSDPERLKALEAVVHPE 92 (203)
T ss_dssp CTTSCHHHHHHHHHHT-TCCEEEHHHHHHHHHHHTH-HHHHHHC-GGGEETTEECHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHC-CCEEEcccHHHHHhcCChH-HHHHHHH-HHHHhCCCcCHHHHHHHHhCCHHHHHHHHHHhChH
Confidence 6899999999999997 9999999998765431221 2232222 1100 0 000 0
Q ss_pred ---HHHHHHhcc-CCcEEEeCCceeeCHhhHHhcc-CCeEEEEECCHHHHHHHHhccCCCCCCccccCCCCChhHHHHHH
Q 029455 55 ---EVLQKLSLM-RQLVVSTGGGAVTRPINWRYMQ-KGISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNR 129 (193)
Q Consensus 55 ---~~~~~l~~~-~~~vi~~g~~~v~~~~~~~~l~-~~~vV~L~~~~~~~~~Rl~~~~~~~R~~~~~~~~~~~~~~~~~~ 129 (193)
..+...... +++||..+. .+....+ .. .+.+|||++|++++.+|+.. |+.... + +....
T Consensus 93 i~~~~i~~~~~~g~~~vi~d~~--~l~~~~~--~~~~d~~i~l~~~~e~~~~R~~~-----R~~~~~----~---~~~~~ 156 (203)
T 1uf9_A 93 VRRLLMEELSRLEAPLVFLEIP--LLFEKGW--EGRLHGTLLVAAPLEERVRRVMA-----RSGLSR----E---EVLAR 156 (203)
T ss_dssp HHHHHHHHHHTCCCSEEEEECT--TTTTTTC--GGGSSEEEEECCCHHHHHHHHHT-----TTCCTT----H---HHHHH
T ss_pred HHHHHHHHhhhcCCCEEEEEec--ceeccCc--hhhCCEEEEEECCHHHHHHHHHH-----cCCCCH----H---HHHHH
Confidence 011111122 356665542 1222111 11 26899999999999999986 332211 0 12222
Q ss_pred HHHHHHHHHHHHhhccceeechhhhhhcccccCCCCCHHHHHHHHHHHHHhhhc
Q 029455 130 LSTLWEERGEAYANANARVSLENIAVKLGHKDVSSLTPVTIAIEALEQIEGFLK 183 (193)
Q Consensus 130 ~~~~~~~r~~~y~~~~~~i~~~~~~~~~~~iDt~~~~~~~~~~~i~~~~~~~~~ 183 (193)
+...+. ....+..+|.+ ||++. +++++++.|.+.+..++.
T Consensus 157 i~~~~~-~~~~~~~ad~v------------Id~~~-~~~~~~~~i~~~~~~~~~ 196 (203)
T 1uf9_A 157 ERAQMP-EEEKRKRATWV------------LENTG-SLEDLERALKAVLAELTG 196 (203)
T ss_dssp HTTSCC-HHHHHHHCSEE------------ECCSS-HHHHHHHHHHHHHHSCCC
T ss_pred HHHCCC-hhHHHHhCCEE------------EECCC-CHHHHHHHHHHHHHHHHh
Confidence 222111 01112336655 47765 999999999999887654
No 58
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=99.41 E-value=3.8e-12 Score=102.12 Aligned_cols=151 Identities=17% Similarity=0.204 Sum_probs=84.5
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHHHHHh-CC-CCHHHHHHHhcch----------------hhHH------HH---
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQSV-DG-TSVAEIFKLYGEG----------------FFRE------KE--- 53 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~~~~~-~g-~~~~~~~~~~~~~----------------~~~~------~e--- 53 (193)
+|||||||+|+.|+ .+|++++++|.+.+..+ +| .....+....|.. .|.. ++
T Consensus 83 ~~GSGKSTva~~La-~lg~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~i~~~~g~idr~~l~~~vf~~~~~~~~l~~i~ 161 (281)
T 2f6r_A 83 ISGSGKSSVAQRLK-NLGAYIIDSDHLGHRAYAPGGPAYQPVVEAFGTDILHKDGTINRKVLGSRVFGNKKQMKILTDIV 161 (281)
T ss_dssp CTTSCHHHHHHHHH-HHTCEEEEHHHHHHHHTSTTSTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHH-HCCCcEEehhHHHHHHhcCChHHHHHHHHHcCccccCCCCCcCHHHHHHHHhCCHHHHHHhhccc
Confidence 68999999999999 59999999999876644 12 1122222222211 0110 00
Q ss_pred --------HHHHHHHhcc-CCcEEEeCCceeeCHhhHHhcc-CCeEEEEECCHHHHHHHHhccCCCCCCccccCCCCChh
Q 029455 54 --------TEVLQKLSLM-RQLVVSTGGGAVTRPINWRYMQ-KGISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAY 123 (193)
Q Consensus 54 --------~~~~~~l~~~-~~~vi~~g~~~v~~~~~~~~l~-~~~vV~L~~~~~~~~~Rl~~~~~~~R~~~~~~~~~~~~ 123 (193)
...+..+... ...||.+|. .+....+. . .+.+|||+||++++.+|+.+|. +++.
T Consensus 162 ~P~i~~~~~~~~~~~~~~~~~~vIveg~--~l~~~~~~--~~~d~vI~l~a~~ev~~~Rl~~R~--g~s~---------- 225 (281)
T 2f6r_A 162 WPVIAKLAREEMDVAVAKGKTLCVIDAA--MLLEAGWQ--SMVHEVWTVVIPETEAVRRIVERD--GLSE---------- 225 (281)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEECT--TTTTTTGG--GGCSEEEEEECCHHHHHHHHHHHH--CCCH----------
T ss_pred ChHHHHHHHHHHHHHhccCCCEEEEEec--hhhccchH--HhCCEEEEEcCCHHHHHHHHHHcC--CCCH----------
Confidence 0111122122 345666663 22222221 1 2789999999999999998741 1211
Q ss_pred HHHHHHHHHHHHHHHHHHhhccceeechhhhhhcccccCCCCCHHHHHHHHHHHHHhhh
Q 029455 124 TEALNRLSTLWEERGEAYANANARVSLENIAVKLGHKDVSSLTPVTIAIEALEQIEGFL 182 (193)
Q Consensus 124 ~~~~~~~~~~~~~r~~~y~~~~~~i~~~~~~~~~~~iDt~~~~~~~~~~~i~~~~~~~~ 182 (193)
++....+...+. ....+..+|.+| |++ .+++++.+.|.+.+..++
T Consensus 226 e~~~~ri~~q~~-~~~~~~~AD~vI------------dn~-~s~eel~~~I~~~l~~l~ 270 (281)
T 2f6r_A 226 AAAQSRLQSQMS-GQQLVEQSNVVL------------STL-WESHVTQSQVEKAWNLLQ 270 (281)
T ss_dssp HHHHHHHHTSCC-HHHHHHTCSEEE------------ECS-SCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCC-hHhhHhhCCEEE------------ECC-CCHHHHHHHHHHHHHHHH
Confidence 012233322211 112233467665 665 599999999998887654
No 59
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=99.41 E-value=2e-12 Score=97.93 Aligned_cols=75 Identities=17% Similarity=0.130 Sum_probs=52.1
Q ss_pred CeEEEEECCHHHHHHHHhccCCCCCCccccCCCCChhHHHHHHHHHHHHHHHHHHh-h-ccceeechhhhhhcccccCCC
Q 029455 87 GISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYA-N-ANARVSLENIAVKLGHKDVSS 164 (193)
Q Consensus 87 ~~vV~L~~~~~~~~~Rl~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~r~~~y~-~-~~~~i~~~~~~~~~~~iDt~~ 164 (193)
+.+|||++|++++.+|+.+| .|+..... .. +..+.+...+..+.+.|. . ++.+ ||++.
T Consensus 126 d~vi~L~~~~e~~~~Rl~~R---~r~~~~~~--~~---~~~~~l~~~~~~~~~~~~~~~~~~~------------Id~~~ 185 (205)
T 2jaq_A 126 DIVIYLRVSTKTAISRIKKR---GRSEELLI--GE---EYWETLNKNYEEFYKQNVYDFPFFV------------VDAEL 185 (205)
T ss_dssp SEEEEEECCHHHHHHHHHHH---TCHHHHHS--CH---HHHHHHHHHHHHHHHHHTTTSCEEE------------EETTS
T ss_pred CEEEEEeCCHHHHHHHHHHc---CChhhhcC--cH---HHHHHHHHHHHHHHHHccccCcEEE------------EECCC
Confidence 68999999999999999874 35543210 00 234556666666666674 3 4555 47765
Q ss_pred CCHHHHHHHHHHHHHhhh
Q 029455 165 LTPVTIAIEALEQIEGFL 182 (193)
Q Consensus 165 ~~~~~~~~~i~~~~~~~~ 182 (193)
+++++++.|.+.+.++.
T Consensus 186 -~~~~v~~~I~~~l~~~~ 202 (205)
T 2jaq_A 186 -DVKTQIELIMNKLNSIK 202 (205)
T ss_dssp -CHHHHHHHHHHHHHHC-
T ss_pred -CHHHHHHHHHHHHHHhc
Confidence 99999999999987654
No 60
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=99.38 E-value=5.8e-12 Score=97.14 Aligned_cols=30 Identities=23% Similarity=0.422 Sum_probs=28.2
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHHHH
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQ 30 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~~~ 30 (193)
+|||||||+++.|++.+|++++|+|.+++.
T Consensus 13 ~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~ 42 (227)
T 1cke_A 13 PSGAGKGTLCKAMAEALQWHLLDSGAIYRV 42 (227)
T ss_dssp CTTSSHHHHHHHHHHHHTCEEEEHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhCCCcccCcceeeh
Confidence 699999999999999999999999998874
No 61
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=99.37 E-value=6e-13 Score=115.86 Aligned_cols=151 Identities=15% Similarity=0.153 Sum_probs=75.3
Q ss_pred CCCCchHHHHHHHHHhcC------CcEeechHHHHHHhCCCCHHHHHHHhcchhhHHHHHHHHHHHhccCCcEEEeCCc-
Q 029455 1 MMGSGKTTVGKILSGVLG------YSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFREKETEVLQKLSLMRQLVVSTGGG- 73 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg------~~~~d~d~~~~~~~~g~~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~vi~~g~~- 73 (193)
++||||||+++.|+..++ +.++|.|.+......+..... ..+...++.+ ..+++.+...+..++.++.+
T Consensus 377 ~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~l~~~l~f~~---~~r~~~~r~i-~~v~q~l~~~~~ivi~~~~~~ 452 (552)
T 3cr8_A 377 LSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHLSSELGFSK---AHRDVNVRRI-GFVASEITKNRGIAICAPIAP 452 (552)
T ss_dssp SSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHHTTSSCCCSH---HHHHHHHHHH-HHHHHHHHHTTCEEEECCCCC
T ss_pred CCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHhhccccCCCH---HHHHHHHHHH-HHHHHHHHhcCCEEEEecCCc
Confidence 689999999999999884 557999988654321111111 1122223332 23444454445566654422
Q ss_pred -eeeCHhhHHhccC-C--eEEEEECCHHHHHHHHhccCCCCCCccccCCCCChhHHHHHHHHHHHHHHHHHHh--hccce
Q 029455 74 -AVTRPINWRYMQK-G--ISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYA--NANAR 147 (193)
Q Consensus 74 -~v~~~~~~~~l~~-~--~vV~L~~~~~~~~~Rl~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~r~~~y~--~~~~~ 147 (193)
......+++.+.. + .+|||++|.+++.+|+. |++.... ....+..++..|.+.|. .++.+
T Consensus 453 ~~~~r~~~r~lL~~~g~f~~V~L~~~~e~~~~R~~------r~l~~~~--------~~~~i~~l~~~r~~~e~P~~adl~ 518 (552)
T 3cr8_A 453 YRQTRRDVRAMIEAVGGFVEIHVATPIETCESRDR------KGLYAKA--------RAGLIPEFTGVSDPYEVPETPELA 518 (552)
T ss_dssp CHHHHHHHHHHHHTTSEEEEEEECC-------------------------------------------CCCCCCSSCSEE
T ss_pred cHHHHHHHHHHHHHcCCEEEEEEcCCHHHHHHhcc------ccccccc--------cHhHHHHHHhccccccCCCCCCEE
Confidence 1122334445553 5 89999999999999975 4443320 11335566666666553 25544
Q ss_pred eechhhhhhcccccCCCCCHHHHHHHHHHHHHhh
Q 029455 148 VSLENIAVKLGHKDVSSLTPVTIAIEALEQIEGF 181 (193)
Q Consensus 148 i~~~~~~~~~~~iDt~~~~~~~~~~~i~~~~~~~ 181 (193)
|||+..++++++++|++.+...
T Consensus 519 ------------Idt~~~s~~e~v~~Il~~L~~~ 540 (552)
T 3cr8_A 519 ------------IDTTGLAIDEAVQQILLKLEHE 540 (552)
T ss_dssp ------------ECCSSCCHHHHHHHHHHHHHHH
T ss_pred ------------EECCCCCHHHHHHHHHHHHHhc
Confidence 5898899999999999998653
No 62
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=99.36 E-value=2.9e-12 Score=95.18 Aligned_cols=103 Identities=16% Similarity=0.111 Sum_probs=61.3
Q ss_pred CCCCchHHHHHHHHH-hcCCcEeechHHHHHHhCCCCHH--HHHHHhcchhhHHHHHHHHHHHh---ccCCcEEEeCCce
Q 029455 1 MMGSGKTTVGKILSG-VLGYSFFDCDTLIEQSVDGTSVA--EIFKLYGEGFFREKETEVLQKLS---LMRQLVVSTGGGA 74 (193)
Q Consensus 1 ~~GsGKSTia~~La~-~lg~~~~d~d~~~~~~~~g~~~~--~~~~~~~~~~~~~~e~~~~~~l~---~~~~~vi~~g~~~ 74 (193)
+|||||||+|+.|++ .+|+.+++.|.+..... +.+.. ..+...++..+.......+.... ..+..+|..+.
T Consensus 10 ~~GsGKST~a~~L~~~~~~~~~i~~d~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~vi~d~~-- 86 (181)
T 1ly1_A 10 CPGSGKSTWAREFIAKNPGFYNINRDDYRQSIM-AHEERDEYKYTKKKEGIVTGMQFDTAKSILYGGDSVKGVIISDT-- 86 (181)
T ss_dssp CTTSSHHHHHHHHHHHSTTEEEECHHHHHHHHT-TSCCGGGCCCCHHHHHHHHHHHHHHHHHHHTSCSSCCEEEECSC--
T ss_pred CCCCCHHHHHHHHHhhcCCcEEecHHHHHHHhh-CCCccchhhhchhhhhHHHHHHHHHHHHHHhhccCCCeEEEeCC--
Confidence 699999999999999 79999999998776655 32110 00111122223333233344444 33445555442
Q ss_pred eeCHhhHHh----cc--C--CeEEEEECCHHHHHHHHhcc
Q 029455 75 VTRPINWRY----MQ--K--GISVWLDVPLEALAQRIAAV 106 (193)
Q Consensus 75 v~~~~~~~~----l~--~--~~vV~L~~~~~~~~~Rl~~~ 106 (193)
......+.. +. . ..+|||++|++++.+|+..|
T Consensus 87 ~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R 126 (181)
T 1ly1_A 87 NLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKR 126 (181)
T ss_dssp CCSHHHHHHHHHHHHHHTCEEEEEECCCCHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHhcc
Confidence 222222221 11 1 26999999999999999863
No 63
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=99.32 E-value=4.7e-11 Score=89.89 Aligned_cols=73 Identities=14% Similarity=0.148 Sum_probs=43.1
Q ss_pred CCeEEEEECCHHHHHHHHhccCCCCCCccccCCCCChhHHHHHHHHHHHHHHHHHHhhccceeechhhhhhcccccCCCC
Q 029455 86 KGISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVSLENIAVKLGHKDVSSL 165 (193)
Q Consensus 86 ~~~vV~L~~~~~~~~~Rl~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~r~~~y~~~~~~i~~~~~~~~~~~iDt~~~ 165 (193)
.+.+|||++|++++.+|+..| +.... . +..+.+...+.+....+. .+.+ +||+ +.
T Consensus 122 ~d~vi~l~~~~e~~~~Rl~~R-----~~~~~---~----~~~~~~~~~~~~~~~~~~-~~~~-----------~Id~-~~ 176 (197)
T 2z0h_A 122 PDLTFYIDVDVETALKRKGEL-----NRFEK---R----EFLERVREGYLVLAREHP-ERIV-----------VLDG-KR 176 (197)
T ss_dssp CSEEEEEECCHHHHHHHC--------CCCCC---H----HHHHHHHHHHHHHHHHCT-TTEE-----------EEET-TS
T ss_pred CCEEEEEeCCHHHHHHHHhcc-----CcccH---H----HHHHHHHHHHHHHHHhCC-CCEE-----------EEeC-CC
Confidence 478999999999999999873 21111 0 123444444433222221 1222 2675 58
Q ss_pred CHHHHHHHHHHHHHhhhc
Q 029455 166 TPVTIAIEALEQIEGFLK 183 (193)
Q Consensus 166 ~~~~~~~~i~~~~~~~~~ 183 (193)
+++++.+.|.+.+.+.+.
T Consensus 177 ~~e~~~~~i~~~l~~~l~ 194 (197)
T 2z0h_A 177 SIEEIHRDVVREVKRRWK 194 (197)
T ss_dssp CHHHHHHHHHHHTTCC--
T ss_pred CHHHHHHHHHHHHHHHhc
Confidence 999999999999887654
No 64
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=99.29 E-value=2.2e-11 Score=92.57 Aligned_cols=95 Identities=20% Similarity=0.210 Sum_probs=54.5
Q ss_pred CCCCchHHHHHHHHHhc---CCc--EeechHHHHHHhC--CCCHHHHHHHhcchhhHHHHHHHHHHHhccCCcEEEeCCc
Q 029455 1 MMGSGKTTVGKILSGVL---GYS--FFDCDTLIEQSVD--GTSVAEIFKLYGEGFFREKETEVLQKLSLMRQLVVSTGGG 73 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l---g~~--~~d~d~~~~~~~~--g~~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~vi~~g~~ 73 (193)
||||||||+++.|+..+ |.. +++.|.+...... +....+. ...+... ..+...+...+..++.+..
T Consensus 33 ~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~~~~~~~~~~~~~~~~-----~~~~~~~-~~~~~~~~~~~~~vi~~~~- 105 (200)
T 3uie_A 33 LSGSGKSTLACALNQMLYQKGKLCYILDGDNVRHGLNRDLSFKAEDR-----AENIRRV-GEVAKLFADAGIICIASLI- 105 (200)
T ss_dssp STTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTTTTTTTCCSSHHHH-----HHHHHHH-HHHHHHHHHTTCEEEEECC-
T ss_pred CCCCCHHHHHHHHHHHHHhcCceEEEecCchhhhHhhcccCcChHHH-----HHHHHHH-HHHHHHHHhCCceEEEecC-
Confidence 69999999999999998 666 8998887543221 2222221 1122222 1222333333444554331
Q ss_pred eeeCHhhHHhc----cC--CeEEEEECCHHHHHHHH
Q 029455 74 AVTRPINWRYM----QK--GISVWLDVPLEALAQRI 103 (193)
Q Consensus 74 ~v~~~~~~~~l----~~--~~vV~L~~~~~~~~~Rl 103 (193)
...+..+..+ .. ..+|||++|++++.+|+
T Consensus 106 -~~~~~~r~~~~~~~~~~~~~~v~L~a~~e~~~~R~ 140 (200)
T 3uie_A 106 -SPYRTDRDACRSLLPEGDFVEVFMDVPLSVCEARD 140 (200)
T ss_dssp -CCCHHHHHHHHHTSCTTSEEEEEECCCHHHHHHHC
T ss_pred -CchHHHHHHHHHhcCCCCEEEEEEeCCHHHHHHhc
Confidence 1223333332 22 25799999999999997
No 65
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=99.28 E-value=5.9e-13 Score=102.19 Aligned_cols=150 Identities=15% Similarity=0.107 Sum_probs=79.3
Q ss_pred CCCCchHHHHHHHHHhcC------CcEeechHHHHHHhCCCCHHHHHHHhcchhhHHHHHHHHHHHhccCCcEEEeCCce
Q 029455 1 MMGSGKTTVGKILSGVLG------YSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFREKETEVLQKLSLMRQLVVSTGGGA 74 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg------~~~~d~d~~~~~~~~g~~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~vi~~g~~~ 74 (193)
+|||||||+++.|++.++ +.+++.|.+......+.. +....+...++.+.. .+......+..||++.. .
T Consensus 33 ~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~r~~l~~~~~---~~~~~r~~~~~~~~~-~~~~~l~~g~~VI~d~~-~ 107 (211)
T 1m7g_A 33 LSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRFGLNKDLG---FSEADRNENIRRIAE-VAKLFADSNSIAITSFI-S 107 (211)
T ss_dssp STTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHTTTTTTTCC---SSHHHHHHHHHHHHH-HHHHHHHTTCEEEEECC-C
T ss_pred CCCCCHHHHHHHHHHHhccccCCcEEEECChHHhhhhccccC---CCHHHHHHHHHHHHH-HHHHHHHCCCEEEEecC-C
Confidence 689999999999999886 778887776432221111 111223333443322 23333444556665532 1
Q ss_pred eeCHhhHHhc----c----------CCeEEEEECCHHHHHHHHhccCCCCCCccccCCCCChhHHHHHHHHHHHHHHHHH
Q 029455 75 VTRPINWRYM----Q----------KGISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEA 140 (193)
Q Consensus 75 v~~~~~~~~l----~----------~~~vV~L~~~~~~~~~Rl~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 140 (193)
.....++.+ . ++++|||+||++++.+|+. |+.... ..+.....+..+...
T Consensus 108 -~~~~~~~~l~~l~~~~~~~~~~~~p~~vi~Ld~~~e~~~~R~~------r~~~~~---------~r~~~~~~~~~~~~~ 171 (211)
T 1m7g_A 108 -PYRKDRDTARQLHEVATPGEETGLPFVEVYVDVPVEVAEQRDP------KGLYKK---------AREGVIKEFTGISAP 171 (211)
T ss_dssp -CCHHHHHHHHHHHHCCCTTCSCCCCEEEEEEECCHHHHHTSCT------TCHHHH---------HHHTSSSSCBTTTBC
T ss_pred -ccHHHHHHHHHHhhhcccccccCCCeEEEEEeCCHHHHHHhhh------HHHHHH---------HHhcchhhhhhhhhh
Confidence 111222211 1 1589999999999999962 332110 000000000001111
Q ss_pred HhhccceeechhhhhhcccccCCCCCHHHHHHHHHHHHHh
Q 029455 141 YANANARVSLENIAVKLGHKDVSSLTPVTIAIEALEQIEG 180 (193)
Q Consensus 141 y~~~~~~i~~~~~~~~~~~iDt~~~~~~~~~~~i~~~~~~ 180 (193)
|... ...+++|||+.++++++++.|.+.+..
T Consensus 172 y~~~---------~~~~~~IDt~~~s~eev~~~I~~~l~~ 202 (211)
T 1m7g_A 172 YEAP---------ANPEVHVKNYELPVQDAVKQIIDYLDT 202 (211)
T ss_dssp CCCC---------SSCSEEEECSSSCHHHHHHHHHHHHHH
T ss_pred ccCC---------CCCeEEEECCCCCHHHHHHHHHHHHHH
Confidence 2210 011234798888999999999998865
No 66
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=99.27 E-value=1.8e-12 Score=97.40 Aligned_cols=148 Identities=16% Similarity=0.129 Sum_probs=77.5
Q ss_pred CCCCchHHHHHHHHHhcC-----CcEeechHHHHHHhCCCCHHHHHHHhcchhhHHHHHHHHHHHhccCCcEEEeCCcee
Q 029455 1 MMGSGKTTVGKILSGVLG-----YSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFREKETEVLQKLSLMRQLVVSTGGGAV 75 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg-----~~~~d~d~~~~~~~~g~~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~vi~~g~~~v 75 (193)
+|||||||+++.|++.++ +.+++.|.+......+..... ......+..+ ..+...+...+..|+..+ ...
T Consensus 21 ~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~---~~r~~~~~~~-~~~~~~~~~~g~~vi~d~-~~~ 95 (186)
T 2yvu_A 21 LPGSGKTTIATRLADLLQKEGYRVEVLDGDWARTTVSEGAGFTR---EERLRHLKRI-AWIARLLARNGVIVICSF-VSP 95 (186)
T ss_dssp CTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHTTTTTTCCCCH---HHHHHHHHHH-HHHHHHHHTTTCEEEEEC-CCC
T ss_pred CCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHHHHHHhhccCCCh---hhHHHHHHHH-HHHHHHHHhCCCEEEEeC-ccc
Confidence 689999999999999885 357788876433221111100 1111112211 111222333344455433 211
Q ss_pred e---CHhhHHhcc----CCeEEEEECCHHHHHHHHhccCC-C-CCCccccCCCCChhHHHHHHHHHHHHHHHHHHh---h
Q 029455 76 T---RPINWRYMQ----KGISVWLDVPLEALAQRIAAVGT-D-SRPLLHQCESGDAYTEALNRLSTLWEERGEAYA---N 143 (193)
Q Consensus 76 ~---~~~~~~~l~----~~~vV~L~~~~~~~~~Rl~~~~~-~-~R~~~~~~~~~~~~~~~~~~~~~~~~~r~~~y~---~ 143 (193)
. ....+..+. ++.+|||++|++++.+|+..+.. + .++... .+ ...+. .|. .
T Consensus 96 ~~~~r~~~~~~~~~~~~~~~~v~L~~~~e~~~~R~~~~~~~~~~~~~~~-------------~~---~~~~~-~y~~~~~ 158 (186)
T 2yvu_A 96 YKQARNMVRRIVEEEGIPFLEIYVKASLEEVIRRDPKGLYKKALKGELE-------------NF---TGITD-PYEPPEN 158 (186)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHCHHHHHHHHHTTCCS-------------SC---HHHHS-CCCCCSS
T ss_pred cHHHHHHHHHHhhccCCCeEEEEEeCCHHHHHHhhhhhhhhHHhhcchh-------------hh---hhhhh-cccCCCC
Confidence 1 111222232 25899999999999999853100 0 011000 01 11121 243 1
Q ss_pred ccceeechhhhhhcccccCCCCCHHHHHHHHHHHHHhhh
Q 029455 144 ANARVSLENIAVKLGHKDVSSLTPVTIAIEALEQIEGFL 182 (193)
Q Consensus 144 ~~~~i~~~~~~~~~~~iDt~~~~~~~~~~~i~~~~~~~~ 182 (193)
++. +|||++.+++++++.|.+.+...+
T Consensus 159 ~~~------------~Id~~~~~~~ev~~~I~~~l~~~~ 185 (186)
T 2yvu_A 159 PQL------------VLDTESNTIEHNVSYLYSLVKAVI 185 (186)
T ss_dssp CSE------------EEETTTSCHHHHHHHHHHHHHHHC
T ss_pred CcE------------EEECCCCCHHHHHHHHHHHHHHhc
Confidence 333 368888999999999999987654
No 67
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=99.26 E-value=2.1e-12 Score=113.61 Aligned_cols=149 Identities=19% Similarity=0.188 Sum_probs=82.6
Q ss_pred CCCCchHHHHHHHHHhc---CCcEeechH-HHHHHhCCCCHHHHHH-HhcchhhHHHHHHHHHHHhccCCcEEEeCCcee
Q 029455 1 MMGSGKTTVGKILSGVL---GYSFFDCDT-LIEQSVDGTSVAEIFK-LYGEGFFREKETEVLQKLSLMRQLVVSTGGGAV 75 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l---g~~~~d~d~-~~~~~~~g~~~~~~~~-~~~~~~~~~~e~~~~~~l~~~~~~vi~~g~~~v 75 (193)
+|||||||+|+.|+++| |+++++.|. .++... .....+. ..+...++.+. .+...+...+..|+. +...+
T Consensus 60 lsGSGKSTlAr~La~~L~~~G~~~v~lDgD~iR~~L---~~~~~fs~~dree~~r~i~-eva~~~l~~G~iVI~-d~~s~ 134 (630)
T 1x6v_B 60 LSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGL---NKNLGFSPEDREENVRRIA-EVAKLFADAGLVCIT-SFISP 134 (630)
T ss_dssp STTSSHHHHHHHHHHHHHHTTCCEEEESHHHHTTTT---TTTCCSSHHHHHHHHHHHH-HHHHHHHHTTCEEEE-ECCCC
T ss_pred CCCCCHHHHHHHHHHHHHhcCCeEEEechHHhhhcc---CccccCChhhhHHHHHHHH-HHHHHHHhCCCEEEE-eCchh
Confidence 58999999999999999 998877753 233221 1111111 23445565542 233333444444443 32222
Q ss_pred e---CHhhHHhccC----CeEEEEECCHHHHHHHHhccCCCCCCccccCCCCChhHHHHHHHHHHHHHHHHHHh---hcc
Q 029455 76 T---RPINWRYMQK----GISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYA---NAN 145 (193)
Q Consensus 76 ~---~~~~~~~l~~----~~vV~L~~~~~~~~~Rl~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~r~~~y~---~~~ 145 (193)
. ....+..+.. .++|||+||++++.+|+.+ +.....+.++ + ..+..+...|. .++
T Consensus 135 ~~~~r~~~r~ll~~~g~p~~vV~Ldap~Evl~~Rl~r------~ly~~aR~~~--------~-~~~~~~~~~Ye~p~~~d 199 (630)
T 1x6v_B 135 YTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVK------GLYKKARAGE--------I-KGFTGIDSEYEKPEAPE 199 (630)
T ss_dssp CHHHHHHHHHHHHTTTCCEEEEEEECCHHHHHHHCTT------SHHHHHTTC-------------CBTTTBCCCCCSSCS
T ss_pred hHHHHHHHHHHHHhCCCCeEEEEEECCHHHHHHHhcc------ccchhhhhhh--------H-HHHHHhhhhhcccCCCc
Confidence 2 1222333332 3699999999999999862 2111000000 0 00111223343 133
Q ss_pred ceeechhhhhhcccccCCCCCHHHHHHHHHHHHHhh
Q 029455 146 ARVSLENIAVKLGHKDVSSLTPVTIAIEALEQIEGF 181 (193)
Q Consensus 146 ~~i~~~~~~~~~~~iDt~~~~~~~~~~~i~~~~~~~ 181 (193)
. +|||+..+++++++.|++.+...
T Consensus 200 l------------vIDts~~s~eevv~~Il~~L~~~ 223 (630)
T 1x6v_B 200 L------------VLKTDSCDVNDCVQQVVELLQER 223 (630)
T ss_dssp E------------EEETTSSCHHHHHHHHHHHHHHT
T ss_pred E------------EEECCCCCHHHHHHHHHHHHHhc
Confidence 3 46998899999999999998754
No 68
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=99.24 E-value=5.3e-11 Score=90.72 Aligned_cols=157 Identities=12% Similarity=0.049 Sum_probs=82.0
Q ss_pred CCCCchHHHHHHHHHhc-CCcEeechHHHHHHhCCCCH-------HHHHHHhcchhhHHHHHHHHHHHh-----------
Q 029455 1 MMGSGKTTVGKILSGVL-GYSFFDCDTLIEQSVDGTSV-------AEIFKLYGEGFFREKETEVLQKLS----------- 61 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l-g~~~~d~d~~~~~~~~g~~~-------~~~~~~~~~~~~~~~e~~~~~~l~----------- 61 (193)
+|||||||+++.|++.+ ++.+++.|.++.... +... .++........+...-...+....
T Consensus 29 ~~GsGKSTl~~~L~~~~~~~~~i~~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~ 107 (207)
T 2qt1_A 29 VTNSGKTTLAKNLQKHLPNCSVISQDDFFKPES-EIETDKNGFLQYDVLEALNMEKMMSAISCWMESARHSVVSTDQESA 107 (207)
T ss_dssp STTSSHHHHHHHHHTTSTTEEEEEGGGGBCCGG-GSCBCTTSCBCCSSGGGBCHHHHHHHHHHHHHHHTTSSCCC-----
T ss_pred CCCCCHHHHHHHHHHhcCCcEEEeCCccccCHh-HhhccccCCChhHHHHHhHHHHHHHHHHHHHhCCCCCCcCCCeeec
Confidence 58999999999999988 899999998764221 1100 000000000001110011111111
Q ss_pred ccCCcEEEeCCceeeCHhhHHhcc-CCeEEEEECCHHHHHHHHhccCCCCCCccccCCCCChhHHHHHHHHHHHHHHHHH
Q 029455 62 LMRQLVVSTGGGAVTRPINWRYMQ-KGISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEA 140 (193)
Q Consensus 62 ~~~~~vi~~g~~~v~~~~~~~~l~-~~~vV~L~~~~~~~~~Rl~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 140 (193)
.....+|.+|. +... ...... .+.+|||++|++++.+|+..|. +..... .+. ....+...+......
T Consensus 108 ~~~~~vi~eg~--~~~~-~~~~~~~~d~~i~l~~~~~~~~~R~~~R~---~~~e~~---~~~---~~~~~~~~~~~~~~~ 175 (207)
T 2qt1_A 108 EEIPILIIEGF--LLFN-YKPLDTIWNRSYFLTIPYEECKRRRSTRV---YQPPDS---PGY---FDGHVWPMYLKYRQE 175 (207)
T ss_dssp CCCCEEEEECT--TCTT-CGGGTTTCSEEEEEECCHHHHHHHHHHSC---CSSCCC---TTH---HHHTHHHHHHHHHHH
T ss_pred CCCCEEEEeeh--HHcC-cHHHHHhcCeeEEEECCHHHHHHHHHHcC---CCccch---HHH---HHHHHhHHHHHHHHH
Confidence 11345666662 2211 111122 2789999999999999997642 211100 110 111222233333333
Q ss_pred Hhh-ccceeechhhhhhcccccCCCCCHHHHHHHHHHHHHhh
Q 029455 141 YAN-ANARVSLENIAVKLGHKDVSSLTPVTIAIEALEQIEGF 181 (193)
Q Consensus 141 y~~-~~~~i~~~~~~~~~~~iDt~~~~~~~~~~~i~~~~~~~ 181 (193)
+.. ++.++ .||++ .+++++.+.|.+.+.+.
T Consensus 176 ~~~~~~~v~----------~Id~~-~~~eev~~~I~~~l~~~ 206 (207)
T 2qt1_A 176 MQDITWEVV----------YLDGT-KSEEDLFLQVYEDLIQE 206 (207)
T ss_dssp GGGCSSCCE----------EEETT-SCHHHHHHHHHHHHTTT
T ss_pred HHhcCCeEE----------EecCC-CCHHHHHHHHHHHHHhh
Confidence 443 45553 46865 89999999999888654
No 69
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=99.21 E-value=2.1e-09 Score=81.48 Aligned_cols=83 Identities=13% Similarity=0.089 Sum_probs=44.8
Q ss_pred CeEEEEECCHHHHHHHHh-ccCCCCCCcccc---CCCCChhHHHHHHHHHHHHHHHHHHhh-ccceeechhhhhhccccc
Q 029455 87 GISVWLDVPLEALAQRIA-AVGTDSRPLLHQ---CESGDAYTEALNRLSTLWEERGEAYAN-ANARVSLENIAVKLGHKD 161 (193)
Q Consensus 87 ~~vV~L~~~~~~~~~Rl~-~~~~~~R~~~~~---~~~~~~~~~~~~~~~~~~~~r~~~y~~-~~~~i~~~~~~~~~~~iD 161 (193)
+++|||++|++++.+|+. .|+...| .... ....+.+ +.......+....|.. ++. . ...+||
T Consensus 123 ~~vi~l~~~~e~~~~Rl~~~R~~~~~-~~~g~~~~~~~d~~----e~~~~~~~r~~~~~~~~~~~-------~-~~~~Id 189 (213)
T 2plr_A 123 DITFYIRVSPDIALERIKKSKRKIKP-QEAGADIFPGLSPE----EGFLKYQGLITEVYDKLVKD-------E-NFIVID 189 (213)
T ss_dssp SEEEEEECCHHHHHHHHHHTTCCCCT-TTTTTTTCTTSCHH----HHHHHHHHHHHHHHHHHTTT-------T-TCEEEE
T ss_pred CEEEEEeCCHHHHHHHHhcccccccc-cccccccccccchh----hhHHHHHHHHHHHHHHHHhh-------C-CEEEEE
Confidence 689999999999999998 6531112 0000 0001111 1111222222233432 210 0 112468
Q ss_pred CCCCCHHHHHHHHHHHHHhhhc
Q 029455 162 VSSLTPVTIAIEALEQIEGFLK 183 (193)
Q Consensus 162 t~~~~~~~~~~~i~~~~~~~~~ 183 (193)
++ .+++++++.|.+.+.+.+.
T Consensus 190 ~~-~~~e~v~~~I~~~l~~~~~ 210 (213)
T 2plr_A 190 GT-KTPKEIQIQIRKFVGELID 210 (213)
T ss_dssp TT-SCHHHHHHHHHHHHHHHHH
T ss_pred CC-CCHHHHHHHHHHHHHHHhh
Confidence 65 7999999999999887654
No 70
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=99.19 E-value=1.3e-11 Score=92.04 Aligned_cols=147 Identities=20% Similarity=0.123 Sum_probs=75.3
Q ss_pred CCCCchHHHHHHHHHhc---CCcEeech--HHHHHHhC--CCCHHHHHHHhcchhhHHHHHHHHHHHhccCCcEEEeCCc
Q 029455 1 MMGSGKTTVGKILSGVL---GYSFFDCD--TLIEQSVD--GTSVAEIFKLYGEGFFREKETEVLQKLSLMRQLVVSTGGG 73 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l---g~~~~d~d--~~~~~~~~--g~~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~vi~~g~~ 73 (193)
++||||||+++.|++.+ |+++++.| .+...... +... ..++..++.... ...+......++.++.-
T Consensus 13 ~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 85 (179)
T 2pez_A 13 LSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSP-----EDREENVRRIAE--VAKLFADAGLVCITSFI 85 (179)
T ss_dssp CTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTTTTTTTCCSSH-----HHHHHHHHHHHH--HHHHHHHTTCEEEEECC
T ss_pred CCCCCHHHHHHHHHHHHhhCCCcEEEECChHHHHHHhhcccccc-----ccHHHHHHHHHH--HHHHHHHCCCEEEEecC
Confidence 68999999999999988 98887554 33221111 1111 123334444332 11222122344443321
Q ss_pred eee---CHhhHHhcc-C---CeEEEEECCHHHHHHHHhccCC--CCCCccccCCCCChhHHHHHHHHHHHHHHHHHHhhc
Q 029455 74 AVT---RPINWRYMQ-K---GISVWLDVPLEALAQRIAAVGT--DSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANA 144 (193)
Q Consensus 74 ~v~---~~~~~~~l~-~---~~vV~L~~~~~~~~~Rl~~~~~--~~R~~~~~~~~~~~~~~~~~~~~~~~~~r~~~y~~~ 144 (193)
.++ ....+..+. . +.+|||+||++++.+|+.++.. ..++.... . ..+...+.. ...+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~~~~~~~~~~~~~~---~-------~~~~~~~~~----~~~a 151 (179)
T 2pez_A 86 SPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKGLYKKARAGEIKG---F-------TGIDSEYEK----PEAP 151 (179)
T ss_dssp CCCHHHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHCTTSHHHHHHTTSSCS---C-------BTTTBCCCC----CSSC
T ss_pred CcchHHHHHHHHHhhccCCCeEEEEEeCCHHHHHHHHhhhhHHHHhcccccc---c-------ccCCccccC----CCCC
Confidence 122 111222222 1 3789999999999999864100 01111110 0 000000000 1124
Q ss_pred cceeechhhhhhcccccCCCCCHHHHHHHHHHHHHh
Q 029455 145 NARVSLENIAVKLGHKDVSSLTPVTIAIEALEQIEG 180 (193)
Q Consensus 145 ~~~i~~~~~~~~~~~iDt~~~~~~~~~~~i~~~~~~ 180 (193)
+.+ |||+..+++++++.|.+.+.+
T Consensus 152 d~v------------id~~~~~~~~~~~~i~~~l~~ 175 (179)
T 2pez_A 152 ELV------------LKTDSCDVNDCVQQVVELLQE 175 (179)
T ss_dssp SEE------------EETTTSCHHHHHHHHHHHHHH
T ss_pred cEE------------EECCCCCHHHHHHHHHHHHHH
Confidence 544 577888999999999988864
No 71
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=99.18 E-value=3.6e-10 Score=87.99 Aligned_cols=80 Identities=11% Similarity=0.134 Sum_probs=45.6
Q ss_pred CCeEEEEECCHHHHHHHHhccCCCCCCccccCCCCChhHHHHHHHHHHHHHHHHHHhhccceeechhhhhhcccccCCCC
Q 029455 86 KGISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVSLENIAVKLGHKDVSSL 165 (193)
Q Consensus 86 ~~~vV~L~~~~~~~~~Rl~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~r~~~y~~~~~~i~~~~~~~~~~~iDt~~~ 165 (193)
++++|||++|++++.+|+.+|+ +..... ++...+..+++++.|.+....|. ...+ +||+ ..
T Consensus 149 pd~vi~L~~~~e~~~~R~~~R~---~~~dr~---e~~~~~~~~rv~~~y~~l~~~~~-~~~~-----------vIDa-~~ 209 (229)
T 4eaq_A 149 PDLTIYLNVSAEVGRERIIKNS---RDQNRL---DQEDLKFHEKVIEGYQEIIHNES-QRFK-----------SVNA-DQ 209 (229)
T ss_dssp CSEEEEEECCHHHHHHHHHHC--------CC---CHHHHHHHHHHHHHHHHHTTTCT-TTEE-----------EEET-TS
T ss_pred CCEEEEEeCCHHHHHHHHHhcC---CCccch---hhhhHHHHHHHHHHHHHHHHhCC-CCEE-----------EEeC-CC
Confidence 4789999999999999999742 221110 11000122233333322111111 1122 4786 58
Q ss_pred CHHHHHHHHHHHHHhhhcc
Q 029455 166 TPVTIAIEALEQIEGFLKE 184 (193)
Q Consensus 166 ~~~~~~~~i~~~~~~~~~~ 184 (193)
+++++.++|.+.+.+.+++
T Consensus 210 s~eev~~~I~~~l~~~l~~ 228 (229)
T 4eaq_A 210 PLENVVEDTYQTIIKYLEK 228 (229)
T ss_dssp CHHHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHHhcc
Confidence 9999999999999887653
No 72
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=99.16 E-value=1e-11 Score=108.65 Aligned_cols=148 Identities=17% Similarity=0.125 Sum_probs=80.5
Q ss_pred CCCCchHHHHHHHHHhcC----C--cEeechHHHHHHhCCCCHHHHHHHhcchhhHHHHHHHHHHHhccCCcEEEeCCce
Q 029455 1 MMGSGKTTVGKILSGVLG----Y--SFFDCDTLIEQSVDGTSVAEIFKLYGEGFFREKETEVLQKLSLMRQLVVSTGGGA 74 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg----~--~~~d~d~~~~~~~~g~~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~vi~~g~~~ 74 (193)
+|||||||+|+.|+++|+ . .++|.|.+.+....+....+ ......++.+ ..++..+...+..||++..
T Consensus 404 lsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ir~~l~~~~~f~~---~er~~~i~ri-~~v~~~~~~~g~~VI~~~i-- 477 (573)
T 1m8p_A 404 YMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRHELSSELGFTR---EDRHTNIQRI-AFVATELTRAGAAVIAAPI-- 477 (573)
T ss_dssp STTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHHHHHTCTTCCCSH---HHHHHHHHHH-HHHHHHHHHTTCEEEEECC--
T ss_pred CCCCCHHHHHHHHHHHhcccCCceEEEECcHHHHHHhccccCCCh---hHHHHHHHHH-HHHHHHHHhCCCEEEEEcC--
Confidence 689999999999999987 3 56677776543321111111 1111223322 2234445545555665421
Q ss_pred eeCH----hhHHhccC-C--eEEEEECCHHHHHHHHhccCCCCCCccccCCCCChhHHHHHHHHHHHHHHHHHHh--hcc
Q 029455 75 VTRP----INWRYMQK-G--ISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYA--NAN 145 (193)
Q Consensus 75 v~~~----~~~~~l~~-~--~vV~L~~~~~~~~~Rl~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~r~~~y~--~~~ 145 (193)
.... ..+..++. + ++|||+||++++.+|.. |++.... ....+..+...+.+.|. .++
T Consensus 478 s~~~~~R~~~r~l~~~~g~~~~V~Lda~~ev~~~R~~------r~l~~~~--------~~~~i~~~~~~r~~~~~p~~~d 543 (573)
T 1m8p_A 478 APYEESRKFARDAVSQAGSFFLVHVATPLEHCEQSDK------RGIYAAA--------RRGEIKGFTGVDDPYETPEKAD 543 (573)
T ss_dssp CCCHHHHHHHHHHHHTTSEEEEEEECCCHHHHHHHCS------SCHHHHH--------HTTSSSSCBTTTBCCCCCSSCS
T ss_pred CCcHHHHHHHHHHHHhcCCeEEEEEeCCHHHHHHHhc------ccchhhh--------hHHHHHHHHhccccccccCCCC
Confidence 1112 22233333 3 89999999999999963 3322110 00001111112222221 123
Q ss_pred ceeechhhhhhcccccCCCCCHHHHHHHHHHHHHh
Q 029455 146 ARVSLENIAVKLGHKDVSSLTPVTIAIEALEQIEG 180 (193)
Q Consensus 146 ~~i~~~~~~~~~~~iDt~~~~~~~~~~~i~~~~~~ 180 (193)
. +|||+.++++++++.|++.+..
T Consensus 544 l------------~IDts~~s~eevv~~Il~~l~~ 566 (573)
T 1m8p_A 544 L------------VVDFSKQSVRSIVHEIILVLES 566 (573)
T ss_dssp E------------EECTTTSCHHHHHHHHHHHHHH
T ss_pred E------------EEECCCCCHHHHHHHHHHHHHh
Confidence 3 4699999999999999999864
No 73
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=99.16 E-value=1.1e-10 Score=88.98 Aligned_cols=69 Identities=16% Similarity=0.126 Sum_probs=43.4
Q ss_pred CeEEEEE-CCHHHHHHHHhccCCCCCCccccCCCCChhHHHHHHHHHHHHHHHHH---Hh-hccceeechhhhhhccccc
Q 029455 87 GISVWLD-VPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEA---YA-NANARVSLENIAVKLGHKD 161 (193)
Q Consensus 87 ~~vV~L~-~~~~~~~~Rl~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~r~~~---y~-~~~~~i~~~~~~~~~~~iD 161 (193)
..+|||. +|++++.+|+..| +.... + ...+.+.. .+.+. |. .+|.+| +
T Consensus 127 ~~~i~l~~~s~e~l~~Rl~~R-----~~~~~----~---~i~~rl~~---~~~~~~~~~~~~~d~vi------------~ 179 (204)
T 2qor_A 127 GIYIFVKPPSIDILLGRLKNR-----NTEKP----E---EINKRMQE---LTREMDEADKVGFNYFI------------V 179 (204)
T ss_dssp CEEEEEECSCHHHHHHHHHTC-----TTSCH----H---HHHHHHHH---HHHHHHHHHHHTCSEEE------------E
T ss_pred eEEEEEcCCCHHHHHHHHHHc-----CCCCH----H---HHHHHHHH---HHHHHHHhhhccCcEEE------------E
Confidence 3789998 9999999999863 32111 1 11222222 22222 33 367765 4
Q ss_pred CCCCCHHHHHHHHHHHHHhhhcc
Q 029455 162 VSSLTPVTIAIEALEQIEGFLKE 184 (193)
Q Consensus 162 t~~~~~~~~~~~i~~~~~~~~~~ 184 (193)
++ ++++++++|.+.+...+..
T Consensus 180 n~--~~e~~~~~i~~~i~~~~~~ 200 (204)
T 2qor_A 180 ND--DLARTYAELREYLLGSYPQ 200 (204)
T ss_dssp CS--SHHHHHHHHHHHHHHHCTT
T ss_pred Cc--CHHHHHHHHHHHHHHHhhc
Confidence 33 8999999999999876643
No 74
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=99.13 E-value=5.2e-09 Score=80.09 Aligned_cols=78 Identities=13% Similarity=0.157 Sum_probs=45.0
Q ss_pred CCeEEEEECCHHHHHHHHhccCCCCCCccccCCCCChhHHHHHHHHHHHHHHHHHHhh-ccceeechhhhhhcccccCCC
Q 029455 86 KGISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYAN-ANARVSLENIAVKLGHKDVSS 164 (193)
Q Consensus 86 ~~~vV~L~~~~~~~~~Rl~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~r~~~y~~-~~~~i~~~~~~~~~~~iDt~~ 164 (193)
++++|||++|+++..+|+.+|+ +..... +..-.+..+++++.|.+ ..+. .+.++ +||+ +
T Consensus 125 PDl~i~Ld~~~e~~~~Ri~~r~---~~~dr~---e~~~~~f~~~v~~~Y~~---l~~~~~~~~~----------~IDa-~ 184 (205)
T 4hlc_A 125 PDLTIYLNVSAEVGRERIIKNS---RDQNRL---DQEDLKFHEKVIEGYQE---IIHNESQRFK----------SVNA-D 184 (205)
T ss_dssp CSEEEEEECCHHHHHHHHHC----------C---CHHHHHHHHHHHHHHHH---HHHSCCTTEE----------EEET-T
T ss_pred CCEEeeeCCCHHHHHHHHHhcC---Ccccch---hccCHHHHHHHHHHHHH---HHHhCCCCEE----------EEEC-C
Confidence 5899999999999999998742 221110 00000112233333322 1222 22222 4786 5
Q ss_pred CCHHHHHHHHHHHHHhhhc
Q 029455 165 LTPVTIAIEALEQIEGFLK 183 (193)
Q Consensus 165 ~~~~~~~~~i~~~~~~~~~ 183 (193)
.+++++.+.|.+.+.+.++
T Consensus 185 ~~~e~V~~~i~~~i~~~L~ 203 (205)
T 4hlc_A 185 QPLENVVEDTYQTIIKYLE 203 (205)
T ss_dssp SCHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHHh
Confidence 8999999999999988775
No 75
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=99.08 E-value=5.9e-10 Score=84.93 Aligned_cols=74 Identities=15% Similarity=0.087 Sum_probs=42.1
Q ss_pred CeEEEEECCHHHHHHHHhccCCCCCCccccCCCCChhHHHHHHHHHHHHHHHHHHhhccceeechhhhhhcccccCCCCC
Q 029455 87 GISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVSLENIAVKLGHKDVSSLT 166 (193)
Q Consensus 87 ~~vV~L~~~~~~~~~Rl~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~r~~~y~~~~~~i~~~~~~~~~~~iDt~~~~ 166 (193)
+.+|||++|++++.+|+..+ ..| ... . +..+.+...+.+....+ ..+.+ +||+ +.+
T Consensus 131 d~vi~l~~~~e~~~~Rl~r~--~~~--~~~----~---~~~~~~~~~~~~~~~~~-~~~~~-----------~Id~-~~~ 186 (215)
T 1nn5_A 131 DLVLFLQLQLADAAKRGAFG--HER--YEN----G---AFQERALRCFHQLMKDT-TLNWK-----------MVDA-SKS 186 (215)
T ss_dssp SEEEEEECCHHHHHHC-------CT--TCS----H---HHHHHHHHHHHHHTTCT-TSCEE-----------EEET-TSC
T ss_pred CEEEEEeCCHHHHHHHhccC--ccc--cch----H---HHHHHHHHHHHHHHHhC-CCCEE-----------EEEC-CCC
Confidence 78999999999999999632 112 111 0 12233333332211111 12222 3685 589
Q ss_pred HHHHHHHHHHHHHhhhcc
Q 029455 167 PVTIAIEALEQIEGFLKE 184 (193)
Q Consensus 167 ~~~~~~~i~~~~~~~~~~ 184 (193)
++++++.|.+.+...+..
T Consensus 187 ~e~~~~~i~~~l~~~l~~ 204 (215)
T 1nn5_A 187 IEAVHEDIRVLSEDAIAT 204 (215)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 999999999999887654
No 76
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=99.08 E-value=4.1e-11 Score=98.07 Aligned_cols=105 Identities=17% Similarity=0.217 Sum_probs=71.5
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHH--------------HHHhCCC-----CHHHH-HHHhcchhhHHHHHHHHHHH
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLI--------------EQSVDGT-----SVAEI-FKLYGEGFFREKETEVLQKL 60 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~--------------~~~~~g~-----~~~~~-~~~~~~~~~~~~e~~~~~~l 60 (193)
|+||||||||..||++++..++|+|.+. .+.. |. ++.++ ...++...|++....++.++
T Consensus 48 PTgsGKTtLa~~LA~~l~~eiIs~Ds~qvYr~mdIgTakp~~eE~~-gvphhlidi~~~~~e~~s~~~F~~~a~~~i~~i 126 (339)
T 3a8t_A 48 ATGTGKSRLSIDLAAHFPLEVINSDKMQVYKGLDITTNKISVPDRG-GVPHHLLGEVDPARGELTPADFRSLAGKAVSEI 126 (339)
T ss_dssp STTSSHHHHHHHHHTTSCEEEEECCSSTTBSSCTTTTTCCCSGGGT-TCCEESSSCBCGGGCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHCCCcEEcccccccccceeeecCCCCHHHHc-CCCEeeccccCcccCccCHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999862 1111 32 22222 22344456777777777887
Q ss_pred hccCCcEEEeCCceeeCHhhHH---------------------hccC-CeEEEEECCHHHHHHHHhcc
Q 029455 61 SLMRQLVVSTGGGAVTRPINWR---------------------YMQK-GISVWLDVPLEALAQRIAAV 106 (193)
Q Consensus 61 ~~~~~~vi~~g~~~v~~~~~~~---------------------~l~~-~~vV~L~~~~~~~~~Rl~~~ 106 (193)
...+..+|.+|++.++...... .++. .++|||.++.+++.+||.+|
T Consensus 127 ~~~g~~pIlvGGtglYi~all~g~~~p~~~d~~~a~~~~~~~~~~~~~~~~i~L~~~re~L~~RI~~R 194 (339)
T 3a8t_A 127 TGRRKLPVLVGGSNSFIHALLVDRFDSSGPGVFEEGSHSVVSSELRYDCCFLWVDVSVKVLTDYLAKR 194 (339)
T ss_dssp HHTTCEEEEECCCHHHHHHHHBSSCCTTCC-------------CBSSEEEEEEEECCHHHHHHHHHHH
T ss_pred HhcCCeEEEEcCHHHHHHHHHhCCCCCcccChhhhcccCccccccccCeEEEEEeCCHHHHHHHHHhh
Confidence 7777778888864332221111 1222 47899999999999999874
No 77
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=99.07 E-value=2.2e-10 Score=86.66 Aligned_cols=156 Identities=8% Similarity=-0.009 Sum_probs=77.5
Q ss_pred CCCCchHHHHHHHHHhc-CCcEeechHHHH-HHhCCCCHHHHHHHhcc-------hhhHH--HH-HHHHHHHhccCCcEE
Q 029455 1 MMGSGKTTVGKILSGVL-GYSFFDCDTLIE-QSVDGTSVAEIFKLYGE-------GFFRE--KE-TEVLQKLSLMRQLVV 68 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l-g~~~~d~d~~~~-~~~~g~~~~~~~~~~~~-------~~~~~--~e-~~~~~~l~~~~~~vi 68 (193)
+|||||||+++.|++.+ |+++++.+...+ ... |..+.+++...+. -.|.. .+ ...+......+..||
T Consensus 12 ~~GsGKsT~~~~L~~~l~g~~~~~~~~~~~~~~~-g~~i~~~~~~~~~~~~~~~~~l~~~~r~~~~~~i~~~l~~~~~vi 90 (204)
T 2v54_A 12 LDKSGKTTQCMNIMESIPANTIKYLNFPQRSTVT-GKMIDDYLTRKKTYNDHIVNLLFCANRWEFASFIQEQLEQGITLI 90 (204)
T ss_dssp CTTSSHHHHHHHHHHTSCGGGEEEEESSCTTSHH-HHHHHHHHTSSCCCCHHHHHHHHHHHHHTTHHHHHHHHHTTCEEE
T ss_pred CCCCCHHHHHHHHHHHHCCCceEEEecCCCCCcH-HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEE
Confidence 68999999999999999 688887543210 000 1111222211000 00000 00 011222223445566
Q ss_pred EeCCce---------eeCHhhHHhc-----cCCeEEEEECCHHHHHHHHhccCCCCCCccccCCCCChhHHHHHHHHHHH
Q 029455 69 STGGGA---------VTRPINWRYM-----QKGISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLW 134 (193)
Q Consensus 69 ~~g~~~---------v~~~~~~~~l-----~~~~vV~L~~~~~~~~~Rl~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~ 134 (193)
..+... -...+....+ ..+.+|||++|++++.+ .|+ +..... . +..+.+...|
T Consensus 91 ~Dr~~~s~~~~~~~~g~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~---~R~---~d~~e~----~---~~~~rl~~~y 157 (204)
T 2v54_A 91 VDRYAFSGVAYAAAKGASMTLSKSYESGLPKPDLVIFLESGSKEINR---NVG---EEIYED----V---TFQQKVLQEY 157 (204)
T ss_dssp EESCHHHHHHHHHHTTCCHHHHHHHHTTSBCCSEEEEECCCHHHHTT---CCS---SSTTCC----S---HHHHHHHHHH
T ss_pred EECchhhHHHHHHccCCCHHHHHHHhcCCCCCCEEEEEeCCHHHHHh---hcC---cccccH----H---HHHHHHHHHH
Confidence 543100 0111211111 13789999999999877 321 111111 1 2344454444
Q ss_pred HHHHHHHhhccceeechhhhhhcccccCCCCCHHHHHHHHHHHHHhhhc
Q 029455 135 EERGEAYANANARVSLENIAVKLGHKDVSSLTPVTIAIEALEQIEGFLK 183 (193)
Q Consensus 135 ~~r~~~y~~~~~~i~~~~~~~~~~~iDt~~~~~~~~~~~i~~~~~~~~~ 183 (193)
.+....|. .+.+ +||+ +.+++++++.|.+.+.+.+.
T Consensus 158 ~~~~~~~~-~~~~-----------~Id~-~~~~~~v~~~i~~~l~~~l~ 193 (204)
T 2v54_A 158 KKMIEEGD-IHWQ-----------IISS-EFEEDVKKELIKNIVIEAIH 193 (204)
T ss_dssp HHHHTTCS-SCEE-----------EECT-TSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCC-CcEE-----------EEEC-CCCHHHHHHHHHHHHHHHHh
Confidence 43322111 2222 3686 58999999999999987764
No 78
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=99.07 E-value=9.7e-09 Score=79.06 Aligned_cols=79 Identities=18% Similarity=0.225 Sum_probs=49.6
Q ss_pred CCeEEEEECCHHHHHHHHhccCCCCCCccccCCCCChhHHHHHHHHHHHHHHHHHHhhccceeechhhhhhcccccCCCC
Q 029455 86 KGISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVSLENIAVKLGHKDVSSL 165 (193)
Q Consensus 86 ~~~vV~L~~~~~~~~~Rl~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~r~~~y~~~~~~i~~~~~~~~~~~iDt~~~ 165 (193)
++++|||++|++++.+|+.+|+...| ... .. .+..+++++.|......|. +.++ +||+ ..
T Consensus 132 PDlvi~Ld~~~e~~~~Ri~~R~~~dr--~E~---~~--~~~~~rv~~~y~~l~~~~~--~~~~----------vIDa-~~ 191 (213)
T 4edh_A 132 PDLTLVFDLPVEIGLARAAARGRLDR--FEQ---ED--RRFFEAVRQTYLQRAAQAP--ERYQ----------VLDA-GL 191 (213)
T ss_dssp CSEEEEEECCHHHHHHHHCCCSSCCT--TTT---SC--HHHHHHHHHHHHHHHHHCT--TTEE----------EEET-TS
T ss_pred CCEEEEEeCCHHHHHHHHHhcCCcCc--ccc---cH--HHHHHHHHHHHHHHHHHCC--CcEE----------EEeC-CC
Confidence 58999999999999999987421111 111 00 0234455555544332222 2222 3786 58
Q ss_pred CHHHHHHHHHHHHHhhhcc
Q 029455 166 TPVTIAIEALEQIEGFLKE 184 (193)
Q Consensus 166 ~~~~~~~~i~~~~~~~~~~ 184 (193)
+++++.+.|.+.+...+.+
T Consensus 192 s~eeV~~~I~~~l~~~l~~ 210 (213)
T 4edh_A 192 PLAEVQAGLDRLLPNLLER 210 (213)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHh
Confidence 9999999999999887754
No 79
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.06 E-value=3.7e-09 Score=82.67 Aligned_cols=102 Identities=16% Similarity=0.188 Sum_probs=56.4
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHHHHHh-CCCCH----HHHHHHhcchhhHHH-HHHHHHHHhc--cCCcEEEeCC
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQSV-DGTSV----AEIFKLYGEGFFREK-ETEVLQKLSL--MRQLVVSTGG 72 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~~~~~-~g~~~----~~~~~~~~~~~~~~~-e~~~~~~l~~--~~~~vi~~g~ 72 (193)
++||||||+++.|++.+|+..++.++++.... .+..+ ..++ ..+...+... ...+...+.. ...+++ .|.
T Consensus 35 ~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~v~~~l~~~l~~~~~~~~il-~g~ 112 (246)
T 2bbw_A 35 PPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYI-EKSLLVPDHVITRLMMSELENRRGQHWLL-DGF 112 (246)
T ss_dssp CTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTTCHHHHHHHHHH-HTTCCCCHHHHHHHHHHHHHTCTTSCEEE-ESC
T ss_pred CCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcCChHHHHHHHHH-HcCCCCCHHHHHHHHHHHHHhcCCCeEEE-ECC
Confidence 69999999999999999999999988776432 11111 1111 1121111111 1112222221 123333 331
Q ss_pred ceeeCHhhHHhc---c-CCeEEEEECCHHHHHHHHhcc
Q 029455 73 GAVTRPINWRYM---Q-KGISVWLDVPLEALAQRIAAV 106 (193)
Q Consensus 73 ~~v~~~~~~~~l---~-~~~vV~L~~~~~~~~~Rl~~~ 106 (193)
.........+ . .+.+|||++|++++.+|+..+
T Consensus 113 --~~~~~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r 148 (246)
T 2bbw_A 113 --PRTLGQAEALDKICEVDLVISLNIPFETLKDRLSRR 148 (246)
T ss_dssp --CCSHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTE
T ss_pred --CCCHHHHHHHHhhcCCCEEEEEECCHHHHHHHHHcC
Confidence 1111111111 2 379999999999999998753
No 80
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=99.06 E-value=3.6e-10 Score=85.99 Aligned_cols=70 Identities=10% Similarity=0.138 Sum_probs=41.6
Q ss_pred CCeEEEEECCHHHHHHHHhccCCCCCCccccCCCCChhHHHHHHHHHHHHHHHHHHhhccceeechhhhhhcccccCCCC
Q 029455 86 KGISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVSLENIAVKLGHKDVSSL 165 (193)
Q Consensus 86 ~~~vV~L~~~~~~~~~Rl~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~r~~~y~~~~~~i~~~~~~~~~~~iDt~~~ 165 (193)
.+.+|||++|++++.+|+..+ ..| ... . +....+...|.++.. ..++. +||++ .
T Consensus 131 ~d~vi~l~~~~e~~~~Rl~~r--~~r--~~~----~---~~~~~~~~~~~~~~~--~~~~~------------~Id~~-~ 184 (212)
T 2wwf_A 131 PDVVFYLNVPPNYAQNRSDYG--EEI--YEK----V---ETQKKIYETYKHFAH--EDYWI------------NIDAT-R 184 (212)
T ss_dssp CSEEEEEECCTTGGGGSTTTT--SST--TCS----H---HHHHHHHHHGGGGTT--CTTEE------------EEECS-S
T ss_pred CCEEEEEeCCHHHHHHhhccC--ccc--ccH----H---HHHHHHHHHHHHHhc--cCCEE------------EEECC-C
Confidence 378999999999999998642 112 111 0 122222222221110 11122 36875 8
Q ss_pred CHHHHHHHHHHHHHhh
Q 029455 166 TPVTIAIEALEQIEGF 181 (193)
Q Consensus 166 ~~~~~~~~i~~~~~~~ 181 (193)
+++++++.|.+.+.+.
T Consensus 185 ~~~~~~~~i~~~l~~~ 200 (212)
T 2wwf_A 185 KIEDIHNDIVKEVTKI 200 (212)
T ss_dssp CHHHHHHHHHHHHTTS
T ss_pred CHHHHHHHHHHHHHHh
Confidence 9999999999988765
No 81
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.06 E-value=5.6e-10 Score=83.73 Aligned_cols=145 Identities=19% Similarity=0.033 Sum_probs=73.6
Q ss_pred CCCCchHHHHHHHHHhcCC-cEeechHHHHHHhCCCCHHHHHHHhcchhhHHHHHHHHHHHhccCCcEEEeCCceeeCHh
Q 029455 1 MMGSGKTTVGKILSGVLGY-SFFDCDTLIEQSVDGTSVAEIFKLYGEGFFREKETEVLQKLSLMRQLVVSTGGGAVTRPI 79 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~-~~~d~d~~~~~~~~g~~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~vi~~g~~~v~~~~ 79 (193)
|+||||||+++.|++.++. .+++.|.+......|..............+..+.. ........+..++..+ +..+.
T Consensus 10 ~~GaGKSTl~~~L~~~~~g~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~ild~---~~~~~ 85 (189)
T 2bdt_A 10 PAGVGKSTTCKRLAAQLDNSAYIEGDIINHMVVGGYRPPWESDELLALTWKNITD-LTVNFLLAQNDVVLDY---IAFPD 85 (189)
T ss_dssp STTSSHHHHHHHHHHHSSSEEEEEHHHHHTTCCTTCCCGGGCHHHHHHHHHHHHH-HHHHHHHTTCEEEEES---CCCHH
T ss_pred CCCCcHHHHHHHHhcccCCeEEEcccchhhhhccccccCccchhHHHHHHHHHHH-HHHHHHhcCCcEEEee---ccCHH
Confidence 6999999999999998875 78898887543211211111100001111222211 1122222222334333 12222
Q ss_pred h----HHhcc------CCeEEEEECCHHHHHHHHhccCCCCCCccccCCCCChhHHHHHHHHHHHHHHHHHHhhccceee
Q 029455 80 N----WRYMQ------KGISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVS 149 (193)
Q Consensus 80 ~----~~~l~------~~~vV~L~~~~~~~~~Rl~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~r~~~y~~~~~~i~ 149 (193)
. ...++ ...+++|.+|++++.+|+..+. .-...++. .... +..+...+.....+
T Consensus 86 ~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~-----~d~~ld~~--------~~~~-~~~~~~~~~~~~~i-- 149 (189)
T 2bdt_A 86 EAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRK-----KDEQMGER--------CLEL-VEEFESKGIDERYF-- 149 (189)
T ss_dssp HHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSC-----C----CGG--------GGHH-HHHHHHTTCCTTSE--
T ss_pred HHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhcc-----ccccCCHH--------HHHH-HHHHhhcCCCccEE--
Confidence 1 12221 1346889999999999998642 11111111 1222 23333334333333
Q ss_pred chhhhhhcccccCCCC---CHHHHHHHHH
Q 029455 150 LENIAVKLGHKDVSSL---TPVTIAIEAL 175 (193)
Q Consensus 150 ~~~~~~~~~~iDt~~~---~~~~~~~~i~ 175 (193)
|+|++. +++++++.|.
T Consensus 150 ----------i~tsh~~~~~~e~~~~~i~ 168 (189)
T 2bdt_A 150 ----------YNTSHLQPTNLNDIVKNLK 168 (189)
T ss_dssp ----------EECSSSCGGGHHHHHHHHH
T ss_pred ----------EeCCCCChhhHHHHHHHHh
Confidence 578888 8999998887
No 82
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=99.04 E-value=7.2e-11 Score=102.78 Aligned_cols=148 Identities=18% Similarity=0.195 Sum_probs=79.1
Q ss_pred CCCCchHHHHHHHHHhcCC-----cEeechHHHHHHhCCCCHHHHHHHhcchhhHHHHHHHHHHHhccCCcEEEeCCcee
Q 029455 1 MMGSGKTTVGKILSGVLGY-----SFFDCDTLIEQSVDGTSVAEIFKLYGEGFFREKETEVLQKLSLMRQLVVSTGGGAV 75 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~-----~~~d~d~~~~~~~~g~~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~vi~~g~~~v 75 (193)
+|||||||+|+.|++.|+. .++|.|.+.+....+....+ ......+..+. .+...+...+..||..+ ..
T Consensus 380 ~~GsGKSTia~~La~~L~~~G~~~~~ld~D~ir~~l~~~~~f~~---~er~~~l~~i~-~~~~~~l~~G~~VI~d~--~~ 453 (546)
T 2gks_A 380 LPCAGKSTIAEILATMLQARGRKVTLLDGDVVRTHLSRGLGFSK---EDRITNILRVG-FVASEIVKHNGVVICAL--VS 453 (546)
T ss_dssp STTSSHHHHHHHHHHHHHHTTCCEEEECHHHHHHHTCTTCCSSH---HHHHHHHHHHH-HHHHHHHHTTCEEEEEC--CC
T ss_pred CCCCCHHHHHHHHHHHhhhcCCeEEEECchHhhhhhcccccccH---HHHHHHHHHHH-HHHHHHHhCCCEEEEEc--CC
Confidence 5899999999999998874 78898886554431111111 11111122221 12333334444555443 12
Q ss_pred eCHhh----HHhcc-CC-eEEEEECCHHHHHHHHhccCCCCCCccccCCCCChhHHHHHHHHHHHHHHHHHHh--hccce
Q 029455 76 TRPIN----WRYMQ-KG-ISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYA--NANAR 147 (193)
Q Consensus 76 ~~~~~----~~~l~-~~-~vV~L~~~~~~~~~Rl~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~r~~~y~--~~~~~ 147 (193)
..... +..+. .+ .+|||++|.+++.+|+. |+.... . ....+..++..+.+.+. .++.
T Consensus 454 ~~~~~r~~~~~~l~~~d~~vV~L~~~~e~~~~Rl~------r~~~~~---~-----~~~~i~~~~~vr~~~e~~~~adi- 518 (546)
T 2gks_A 454 PYRSARNQVRNMMEEGKFIEVFVDAPVEVCEERDV------KGLYKK---A-----KEGLIKGFTGVDDPYEPPVAPEV- 518 (546)
T ss_dssp CCHHHHHHHHTTSCTTCEEEEEEECCGGGHHHHCC------SSHHHH---C-----------CCBTTTBCCCCCSSCSE-
T ss_pred CCHHHHHHHHHHhhcCCEEEEEEeCCHHHHHHHhh------cccccc---c-----cHHHHHHHHhhhhccccccCCcE-
Confidence 22222 22333 25 89999999999999985 222111 0 00112111111112221 1343
Q ss_pred eechhhhhhcccccCCCCCHHHHHHHHHHHHHh
Q 029455 148 VSLENIAVKLGHKDVSSLTPVTIAIEALEQIEG 180 (193)
Q Consensus 148 i~~~~~~~~~~~iDt~~~~~~~~~~~i~~~~~~ 180 (193)
+|||++.+++++++.|.+.+..
T Consensus 519 -----------vIDts~~s~eev~~~I~~~L~~ 540 (546)
T 2gks_A 519 -----------RVDTTKLTPEESALKILEFLKK 540 (546)
T ss_dssp -----------EEETTTSCHHHHHHHHHHHHHH
T ss_pred -----------EEECCCCCHHHHHHHHHHHHHH
Confidence 4688889999999999998864
No 83
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=98.98 E-value=5.8e-09 Score=82.38 Aligned_cols=80 Identities=20% Similarity=0.089 Sum_probs=48.0
Q ss_pred CCeEEEEECCHHHHHHHHhccCCCCCCccccCCCCChhHHHHHHHHHHHHHHHH------HHhhccceeechhhhhhccc
Q 029455 86 KGISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGE------AYANANARVSLENIAVKLGH 159 (193)
Q Consensus 86 ~~~vV~L~~~~~~~~~Rl~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~r~~------~y~~~~~~i~~~~~~~~~~~ 159 (193)
.+++|||++|++++.+|+..| +|+..... .. +..+.+...+..+.. .|.. + .....++
T Consensus 175 pd~vi~L~~~~e~~~~Ri~~R---~r~~~~~~--~~---~~~~~l~~~~~~~~~~~~v~~~y~~------~--~~~~~~~ 238 (263)
T 1p5z_B 175 LDGIIYLQATPETCLHRIYLR---GRNEEQGI--PL---EYLEKLHYKHESWLLHRTLKTNFDY------L--QEVPILT 238 (263)
T ss_dssp CSEEEEEECCHHHHHHHHHHH---CCGGGTTC--CH---HHHHHHHHHHHHHHTTCCCCCSCGG------G--GGSCEEE
T ss_pred CCeEEEEECCHHHHHHHHHhc---CCccccCc--cH---HHHHHHHHHHHHHHhhccchhhhhh------h--ccCCEEE
Confidence 478999999999999999875 35433220 11 123444444432211 1110 0 0011335
Q ss_pred ccCCCCCHHHHHHHHHHHHHhhh
Q 029455 160 KDVSSLTPVTIAIEALEQIEGFL 182 (193)
Q Consensus 160 iDt~~~~~~~~~~~i~~~~~~~~ 182 (193)
||++ .+++++++.|.+.+...+
T Consensus 239 Id~~-~~~eev~~~I~~~l~~~l 260 (263)
T 1p5z_B 239 LDVN-EDFKDKYESLVEKVKEFL 260 (263)
T ss_dssp EECC-SCHHHHHHHHHHHHHHHH
T ss_pred EECC-CCHHHHHHHHHHHHHHHH
Confidence 8976 499999999999997765
No 84
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=98.97 E-value=3.1e-08 Score=77.39 Aligned_cols=78 Identities=12% Similarity=0.176 Sum_probs=46.2
Q ss_pred CCeEEEEECCHHHHHHHHhccCCCCCCccccCCCCChhHHHHHHHHHHHHHHHHHHhhccceeechhhhhhcccccCCCC
Q 029455 86 KGISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVSLENIAVKLGHKDVSSL 165 (193)
Q Consensus 86 ~~~vV~L~~~~~~~~~Rl~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~r~~~y~~~~~~i~~~~~~~~~~~iDt~~~ 165 (193)
++++|||++|++++.+|+.+|+...| ... . .. +..+++++.|.+....+ .+.+ +||+ ..
T Consensus 155 PDlvi~Ldv~~e~~~~Ri~~R~~~dr--~E~-~-~~---~~~~rv~~~y~~la~~~--~~~~-----------vIDa-~~ 213 (236)
T 3lv8_A 155 PDLTLYLDIDPKLGLERARGRGELDR--IEK-M-DI---SFFERARERYLELANSD--DSVV-----------MIDA-AQ 213 (236)
T ss_dssp CSEEEEEECCHHHHHHC-----CCCT--TTT-S-CH---HHHHHHHHHHHHHHHHC--TTEE-----------EEET-TS
T ss_pred CCEEEEEeCCHHHHHHHHHhcCCcch--hhh-h-HH---HHHHHHHHHHHHHHHHC--CCEE-----------EEeC-CC
Confidence 58999999999999999987531111 111 0 11 23444555544332222 2222 4786 58
Q ss_pred CHHHHHHHHHHHHHhhhcc
Q 029455 166 TPVTIAIEALEQIEGFLKE 184 (193)
Q Consensus 166 ~~~~~~~~i~~~~~~~~~~ 184 (193)
+++++.++|.+.+...+.+
T Consensus 214 sieeV~~~I~~~l~~~l~~ 232 (236)
T 3lv8_A 214 SIEQVTADIRRALQDWLSQ 232 (236)
T ss_dssp CHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHh
Confidence 9999999999999888754
No 85
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=98.96 E-value=1.2e-07 Score=72.90 Aligned_cols=79 Identities=20% Similarity=0.215 Sum_probs=49.7
Q ss_pred CCeEEEEECCHHHHHHHHhccCCCCCCccccCCCCChhHHHHHHHHHHHHHHHHHHhhccceeechhhhhhcccccCCCC
Q 029455 86 KGISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVSLENIAVKLGHKDVSSL 165 (193)
Q Consensus 86 ~~~vV~L~~~~~~~~~Rl~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~r~~~y~~~~~~i~~~~~~~~~~~iDt~~~ 165 (193)
++++|||++|++++++|+.+|+...| ... .. .+..+++++.|.... +..+.++ +||+ ..
T Consensus 133 PDl~i~Ldv~~e~~~~Ri~~R~~~dr--~E~---~~--~~f~~rv~~~y~~la---~~~~~~~----------vIDa-~~ 191 (213)
T 4tmk_A 133 PDLTLYLDVTPEVGLKRARARGELDR--IEQ---ES--FDFFNRTRARYLELA---AQDKSIH----------TIDA-TQ 191 (213)
T ss_dssp CSEEEEEECCHHHHHHHHHHHSSCCT--TTT---SC--HHHHHHHHHHHHHHH---HTCTTEE----------EEET-TS
T ss_pred CCEEEEEeCCHHHHHHHHHhcCCccc--hhh---hH--HHHHHHHHHHHHHHH---HHCCcEE----------EECC-CC
Confidence 58999999999999999988631111 111 01 022344444443321 1112222 4786 58
Q ss_pred CHHHHHHHHHHHHHhhhccc
Q 029455 166 TPVTIAIEALEQIEGFLKEE 185 (193)
Q Consensus 166 ~~~~~~~~i~~~~~~~~~~~ 185 (193)
+++++.+.|.+.+.+.+.+.
T Consensus 192 s~eeV~~~I~~~l~~~l~~~ 211 (213)
T 4tmk_A 192 PLEAVMDAIRTTVTHWVKEL 211 (213)
T ss_dssp CHHHHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999887553
No 86
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=98.94 E-value=1.4e-09 Score=87.42 Aligned_cols=102 Identities=16% Similarity=0.096 Sum_probs=58.6
Q ss_pred CCCCchHHHHHHHHHhc-CCcEeechHHHHHHhCCCCH---HHHHHHhcchhhHHHHHHHHHHHh---ccCCcEEEeCCc
Q 029455 1 MMGSGKTTVGKILSGVL-GYSFFDCDTLIEQSVDGTSV---AEIFKLYGEGFFREKETEVLQKLS---LMRQLVVSTGGG 73 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l-g~~~~d~d~~~~~~~~g~~~---~~~~~~~~~~~~~~~e~~~~~~l~---~~~~~vi~~g~~ 73 (193)
+|||||||+|+.|++++ |+.+++.|.+..... +.+. ..+. ..++..+.......+.... ..+..+|..+.
T Consensus 10 ~~GsGKST~a~~L~~~~~~~~~i~~D~~r~~~~-~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~g~~vi~d~~- 86 (301)
T 1ltq_A 10 CPGSGKSTWAREFIAKNPGFYNINRDDYRQSIM-AHEERDEYKYT-KKKEGIVTGMQFDTAKSILYGGDSVKGVIISDT- 86 (301)
T ss_dssp CTTSSHHHHHHHHHHHSTTEEEECHHHHHHHHT-TSCCCC---CC-HHHHHHHHHHHHHHHHHHTTSCTTCCEEEECSC-
T ss_pred CCCCCHHHHHHHHHHhCCCcEEecccHHHHHhc-cCCcccccccc-hhhhhHHHHHHHHHHHHHHhhccCCCEEEEeCC-
Confidence 69999999999999975 999999997765544 3110 0110 1111222221122333333 33444555442
Q ss_pred eeeCHhhHHh----cc-C---CeEEEEECCHHHHHHHHhcc
Q 029455 74 AVTRPINWRY----MQ-K---GISVWLDVPLEALAQRIAAV 106 (193)
Q Consensus 74 ~v~~~~~~~~----l~-~---~~vV~L~~~~~~~~~Rl~~~ 106 (193)
......+.. .. . ..+|||++|++++.+|+.+|
T Consensus 87 -~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R 126 (301)
T 1ltq_A 87 -NLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKR 126 (301)
T ss_dssp -CCCHHHHHHHHHHHHHTTCEEEEEECCCCHHHHHHHHHHC
T ss_pred -CCCHHHHHHHHHHHHHcCCcEEEEEEECCHHHHHHHHHhc
Confidence 222222221 11 1 27999999999999999874
No 87
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=98.93 E-value=1.8e-08 Score=78.22 Aligned_cols=75 Identities=17% Similarity=0.148 Sum_probs=44.3
Q ss_pred CCeEEEEECCHHHHHHHHhccCCCCCCccccCCCCChhHHHHHHHHHHHHHHHHHHhhccceeechhhhhhcccccCCCC
Q 029455 86 KGISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVSLENIAVKLGHKDVSSL 165 (193)
Q Consensus 86 ~~~vV~L~~~~~~~~~Rl~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~r~~~y~~~~~~i~~~~~~~~~~~iDt~~~ 165 (193)
++++|||++|++++.+|+.+|+. ...... .+ .+..+++++.|......| .+.++ +||+ +.
T Consensus 152 PDl~I~Ldv~~e~~~~Ri~~R~~--~dr~E~---~~--~ef~~rv~~~Y~~la~~~--~~~~~----------vIDa-~~ 211 (227)
T 3v9p_A 152 PDLTVLFDVPPQIASARRGAVRM--PDKFES---ES--DAFFARTRAEYLRRAQEA--PHRFV----------IVDS-SE 211 (227)
T ss_dssp CSEEEEEECCSSCGGGTTTCCCC--C---CC---HH--HHHHHHHHHHHHHHHHHC--TTTEE----------EEET-TS
T ss_pred CCEEEEEeCCHHHHHHHHHhccC--ccchhh---hh--HHHHHHHHHHHHHHHHHh--cCCEE----------EEeC-CC
Confidence 58999999999999999987421 111111 00 012334444443322222 12222 4786 58
Q ss_pred CHHHHHHHHHHHHHh
Q 029455 166 TPVTIAIEALEQIEG 180 (193)
Q Consensus 166 ~~~~~~~~i~~~~~~ 180 (193)
+++++.+.|.+.+..
T Consensus 212 s~eeV~~~I~~~l~~ 226 (227)
T 3v9p_A 212 PIAQIRKQLEGVLAA 226 (227)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999988865
No 88
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=98.91 E-value=2.7e-09 Score=92.39 Aligned_cols=133 Identities=17% Similarity=0.180 Sum_probs=69.9
Q ss_pred CCCCchHHHHHHHHHhcCCc-----EeechHHHHHHhCCC-CHHHHHHHhcchhhHHHHHHH---HHH----Hh-ccCCc
Q 029455 1 MMGSGKTTVGKILSGVLGYS-----FFDCDTLIEQSVDGT-SVAEIFKLYGEGFFREKETEV---LQK----LS-LMRQL 66 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~-----~~d~d~~~~~~~~g~-~~~~~~~~~~~~~~~~~e~~~---~~~----l~-~~~~~ 66 (193)
+|||||||+|+.|++.|++. +++.|++++... |. ...++|...+...++..+..+ +.. +. ..+..
T Consensus 43 lpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r~~~~-~~~~~~~~f~~~~~~~~~~re~~~~~~l~~~~~~L~~~~g~~ 121 (520)
T 2axn_A 43 LPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAV-KQYSSYNFFRPDNEEAMKVRKQCALAALRDVKSYLAKEGGQI 121 (520)
T ss_dssp CTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHH-SCCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHHHHHHSCCCE
T ss_pred CCCCCHHHHHHHHHHHHhhcCCCeEEecccHHHHHhc-cCCccccccCcccHHHHHHHHHHHHHHHHHHHHHHHhcCCce
Confidence 69999999999999998654 367799887776 43 233444333444343222211 211 21 23444
Q ss_pred EEEeC-Cc-eeeCHhhHHhccC-C---eEEEEECC-HHHHHHHHhccCCCCCCccccCCCCChhHHHHHHHHHHHHHHHH
Q 029455 67 VVSTG-GG-AVTRPINWRYMQK-G---ISVWLDVP-LEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGE 139 (193)
Q Consensus 67 vi~~g-~~-~v~~~~~~~~l~~-~---~vV~L~~~-~~~~~~Rl~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 139 (193)
||..+ ++ .......+..++. + ++|++.|+ ++.+.+|+..+. ..||.... .+ .+...+.+.+|..
T Consensus 122 VIvDat~~~~~~R~~~~~~a~~~g~~v~~l~~~~~d~e~i~~ri~~r~-~~rPdl~~---~d-----~e~~~~~~~~Ri~ 192 (520)
T 2axn_A 122 AVFDATNTTRERRHMILHFAKENDFKAFFIESVCDDPTVVASNIMEVK-ISSPDYKD---CN-----SAEAMDDFMKRIS 192 (520)
T ss_dssp EEEESCCCSHHHHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHHHHHT-TTSGGGTT---SC-----HHHHHHHHHHHHH
T ss_pred EEecCCCCCHHHHHHHHHHHHHcCCeEEEEEEeCChHHHHHHHHHhhh-hcCCcccc---CC-----HHHHHHHHHHHHH
Confidence 55332 21 1122222233332 3 34555566 788888886542 34666543 11 1334444555666
Q ss_pred HHhh
Q 029455 140 AYAN 143 (193)
Q Consensus 140 ~y~~ 143 (193)
.|..
T Consensus 193 ~y~~ 196 (520)
T 2axn_A 193 CYEA 196 (520)
T ss_dssp HHHT
T ss_pred hhhh
Confidence 6664
No 89
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.91 E-value=2.2e-09 Score=80.40 Aligned_cols=150 Identities=17% Similarity=0.079 Sum_probs=77.7
Q ss_pred CCCCchHHHHHHHHHhcCCc--EeechHHHHHHhC----CCCHHHHHHHhcchhhHHHHHHHHHHHhccCCcEEEeCCce
Q 029455 1 MMGSGKTTVGKILSGVLGYS--FFDCDTLIEQSVD----GTSVAEIFKLYGEGFFREKETEVLQKLSLMRQLVVSTGGGA 74 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~--~~d~d~~~~~~~~----g~~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~vi~~g~~~ 74 (193)
||||||||+++.|+..++.. +++.|++...... +....... .....+..+.. ........+..++..+
T Consensus 17 ~~GsGKSTl~~~La~~~~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~-~~~~~~~~~~~~~~~~--- 90 (191)
T 1zp6_A 17 HPGSGKSTIAEALANLPGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAAD-VAGRYAKEGYFVILDG--- 90 (191)
T ss_dssp CTTSCHHHHHHHHHTCSSSCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHH-HHHHHHHTSCEEEECS---
T ss_pred CCCCCHHHHHHHHHhccCCCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHH-HHHHHhccCCeEEEec---
Confidence 69999999999999877654 7888887643221 11111100 00000111100 0111122222333322
Q ss_pred eeCHhhHHhc---c-CCeEEEEECCHHHHHHHHhccCCCCCCccccCCCCChhHHHHHHHHHHHHHHHHHHhhccceeec
Q 029455 75 VTRPINWRYM---Q-KGISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVSL 150 (193)
Q Consensus 75 v~~~~~~~~l---~-~~~vV~L~~~~~~~~~Rl~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~r~~~y~~~~~~i~~ 150 (193)
++.......+ . ...++++.++.+++++|+..+ .++... + .+.+..++..+.+.|..++.+
T Consensus 91 ~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r---~~~~ll-----d-----~~~~~~~~~~~~~l~~~~~~~--- 154 (191)
T 1zp6_A 91 VVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDR---GGDSLS-----D-----PLVVADLHSQFADLGAFEHHV--- 154 (191)
T ss_dssp CCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTT---CTTSCC-----C-----HHHHHHHHHHTTCCGGGGGGE---
T ss_pred cCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhc---CCCccC-----C-----HHHHHHHHHHHhccCcccccE---
Confidence 1111111111 2 135799999999999999874 233321 1 122333333333333333333
Q ss_pred hhhhhhcccccCCCCCHHHHHHHHHHHHHhh
Q 029455 151 ENIAVKLGHKDVSSLTPVTIAIEALEQIEGF 181 (193)
Q Consensus 151 ~~~~~~~~~iDt~~~~~~~~~~~i~~~~~~~ 181 (193)
|||++.+++++++.|.+.+...
T Consensus 155 ---------i~t~~~~~~~~~~~i~~~l~~~ 176 (191)
T 1zp6_A 155 ---------LPVSGKDTDQALQSAINALQSG 176 (191)
T ss_dssp ---------EECTTCCTTTTTTTTHHHHHHT
T ss_pred ---------EECCCCCHHHHHHHHHHHHHhh
Confidence 5888889999999999888654
No 90
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=98.90 E-value=7.6e-08 Score=73.07 Aligned_cols=73 Identities=16% Similarity=0.205 Sum_probs=44.8
Q ss_pred CCeEEEEECCHHHHHHHHhccCCCCCCccccCCCCChhHHHHHHHHHHHHHHHHHHhhccceeechhhhhhcccccCCCC
Q 029455 86 KGISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVSLENIAVKLGHKDVSSL 165 (193)
Q Consensus 86 ~~~vV~L~~~~~~~~~Rl~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~r~~~y~~~~~~i~~~~~~~~~~~iDt~~~ 165 (193)
+++++||++|+++..+|...+ .| ... . +..+++++.|.+....+ .+.++ +||+ +.
T Consensus 122 PDl~i~Ld~~~e~~~~R~~~~---dr--~e~---~----ef~~rv~~~y~~la~~~--~~~~~----------~IDa-~~ 176 (197)
T 3hjn_A 122 PDLTFYIDVDVETALKRKGEL---NR--FEK---R----EFLERVREGYLVLAREH--PERIV----------VLDG-KR 176 (197)
T ss_dssp CSEEEEEECCHHHHHHHC------CT--TCC---H----HHHHHHHHHHHHHHHHC--TTTEE----------EEET-TS
T ss_pred CCceeecCcChHHHHHhCcCc---Cc--ccc---H----HHHHHHHHHHHHHHHhC--CCCEE----------EEcC-CC
Confidence 589999999999999996542 23 222 1 23455555554322211 22222 4786 58
Q ss_pred CHHHHHHHHHHHHHhhhc
Q 029455 166 TPVTIAIEALEQIEGFLK 183 (193)
Q Consensus 166 ~~~~~~~~i~~~~~~~~~ 183 (193)
+++++.++|.+.+++.++
T Consensus 177 ~~eeV~~~I~~~i~~rl~ 194 (197)
T 3hjn_A 177 SIEEIHRDVVREVKRRWK 194 (197)
T ss_dssp CHHHHHHHHHHHHSCC--
T ss_pred CHHHHHHHHHHHHHHHhC
Confidence 999999999999987653
No 91
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=98.87 E-value=6.1e-09 Score=81.97 Aligned_cols=101 Identities=20% Similarity=0.184 Sum_probs=60.0
Q ss_pred CCCCchHHHHHHHHHhcC--CcEeechHHHH---------HHhCCCCHHHHHHHhcchhhHHHHHHHHHHHhcc-CCcEE
Q 029455 1 MMGSGKTTVGKILSGVLG--YSFFDCDTLIE---------QSVDGTSVAEIFKLYGEGFFREKETEVLQKLSLM-RQLVV 68 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg--~~~~d~d~~~~---------~~~~g~~~~~~~~~~~~~~~~~~e~~~~~~l~~~-~~~vi 68 (193)
+|||||||+|+.|++.++ +.+++.|.+.. ... |....+++... +......++..+... .++|+
T Consensus 40 ~~GsGKSTla~~L~~~l~~~~~~~~~D~~r~~~~~~~~i~~~~-g~~~~~~~~~~----~~~~~~~~~~~~~~~g~~vVi 114 (253)
T 2p5t_B 40 QSGAGKTTIHRIKQKEFQGNIVIIDGDSFRSQHPHYLELQQEY-GKDSVEYTKDF----AGKMVESLVTKLSSLGYNLLI 114 (253)
T ss_dssp CGGGTTHHHHHHHHHHTTTCCEEECGGGGGTTSTTHHHHHTTC-SSTTHHHHHHH----HHHHHHHHHHHHHHTTCCEEE
T ss_pred CCCCCHHHHHHHHHHhcCCCcEEEecHHHHHhchhHHHHHHHc-CchHHHHhhHH----HHHHHHHHHHHHHhcCCCEEE
Confidence 699999999999999987 57789988732 122 44444443211 122223344444444 35666
Q ss_pred EeCCcee-eCHhhHHhcc-CC---eEEEEECCHHHHHHHHhcc
Q 029455 69 STGGGAV-TRPINWRYMQ-KG---ISVWLDVPLEALAQRIAAV 106 (193)
Q Consensus 69 ~~g~~~v-~~~~~~~~l~-~~---~vV~L~~~~~~~~~Rl~~~ 106 (193)
+++.+.. ........++ .+ .+||+.+|++++.+|+..|
T Consensus 115 d~~~~~~~~~~~~~~~l~~~g~~v~lv~l~~~~e~~~~R~~~R 157 (253)
T 2p5t_B 115 EGTLRTVDVPKKTAQLLKNKGYEVQLALIATKPELSYLSTLIR 157 (253)
T ss_dssp ECCTTSSHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHHH
T ss_pred eCCCCCHHHHHHHHHHHHHCCCcEEEEEEeCCHHHHHHHHHHH
Confidence 5432222 1222233343 23 3568899999999999875
No 92
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=98.83 E-value=1.2e-09 Score=86.12 Aligned_cols=105 Identities=13% Similarity=0.064 Sum_probs=58.7
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHHH--HH-h-CCCC-HHH-------------HHH-HhcchhhHHHHHHHHHHHh
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIE--QS-V-DGTS-VAE-------------IFK-LYGEGFFREKETEVLQKLS 61 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~~--~~-~-~g~~-~~~-------------~~~-~~~~~~~~~~e~~~~~~l~ 61 (193)
||||||||+|+.||+++|+++++.|.+.. .. . .+.+ ..+ +.. ..+...|.......+ .+.
T Consensus 9 ~~GSGKSTla~~La~~~~~~~i~~D~~~~~~~~~~~t~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~i-~~~ 87 (253)
T 2ze6_A 9 PTCSGKTDMAIQIAQETGWPVVALDRVQCCPQIATGSGRPLESELQSTRRIYLDSRPLTEGILDAESAHRRLIFEV-DWR 87 (253)
T ss_dssp CTTSSHHHHHHHHHHHHCCCEEECCSGGGCGGGTTTTTCCCGGGGTTCCEECSCCCCGGGCSCCHHHHHHHHHHHH-HTT
T ss_pred CCCcCHHHHHHHHHhcCCCeEEeccHHhccCCCccccCCCCHHHHhCCCeEEEeeeccccccccHHHHHHHHHHHH-HHH
Confidence 69999999999999999999999998642 11 0 0111 000 000 112233544444444 444
Q ss_pred ccCCcEEEeCCceeeCHhhHHh--ccC---CeEEEEECCH-HHHHHHHhcc
Q 029455 62 LMRQLVVSTGGGAVTRPINWRY--MQK---GISVWLDVPL-EALAQRIAAV 106 (193)
Q Consensus 62 ~~~~~vi~~g~~~v~~~~~~~~--l~~---~~vV~L~~~~-~~~~~Rl~~~ 106 (193)
..+..+|.+++........... +.. ..+|||++|. +++.+|+.+|
T Consensus 88 ~~g~~vIl~gg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~e~l~~Rl~~R 138 (253)
T 2ze6_A 88 KSEEGLILEGGSISLLNCMAKSPFWRSGFQWHVKRLRLGDSDAFLTRAKQR 138 (253)
T ss_dssp TTSSEEEEEECCHHHHHHHHHCTTTTSSCEEEEEECCCCCHHHHHHHHHHH
T ss_pred hCCCCeEEeccHHHHHHHHHhcccccccCceEEEEecchhHHHHHHHHHHH
Confidence 4444444444321111111111 001 2689999997 9999999875
No 93
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=98.81 E-value=9.3e-08 Score=76.69 Aligned_cols=103 Identities=22% Similarity=0.263 Sum_probs=56.7
Q ss_pred CCCCchHHHHHHHHHhc--CCcEeechHHHHHHhCCCCHHHHHHHhcc-------hhhHHHHHHHHHHHhcc-CCcEEEe
Q 029455 1 MMGSGKTTVGKILSGVL--GYSFFDCDTLIEQSVDGTSVAEIFKLYGE-------GFFREKETEVLQKLSLM-RQLVVST 70 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l--g~~~~d~d~~~~~~~~g~~~~~~~~~~~~-------~~~~~~e~~~~~~l~~~-~~~vi~~ 70 (193)
||||||||+++.|++++ ++.+++.|.+..... + ...+....+. ..+.......+..+... .++|+..
T Consensus 41 ~sGsGKSTla~~L~~~~~~~~~~Is~D~~R~~~~-~--~~~~~~~~~~~a~~~~~~~~~~~~~~~v~~~l~~g~~vIld~ 117 (287)
T 1gvn_B 41 QPGSGKTSLRSAIFEETQGNVIVIDNDTFKQQHP-N--FDELVKLYEKDVVKHVTPYSNRMTEAIISRLSDQGYNLVIEG 117 (287)
T ss_dssp CTTSCTHHHHHHHHHHTTTCCEEECTHHHHTTST-T--HHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHHHTCCEEECC
T ss_pred CCCCCHHHHHHHHHHHhCCCeEEEechHhHHhch-h--hHHHHHHccchhhhhhhHHHHHHHHHHHHHHHhcCCeEEEEC
Confidence 79999999999999998 789999988753221 1 1111111111 12333223334444433 3445442
Q ss_pred CCceee-CHhhHHhccC-C---eEEEEECCHHHH----HHHHhcc
Q 029455 71 GGGAVT-RPINWRYMQK-G---ISVWLDVPLEAL----AQRIAAV 106 (193)
Q Consensus 71 g~~~v~-~~~~~~~l~~-~---~vV~L~~~~~~~----~~Rl~~~ 106 (193)
...... .......++. + .++++.+|++++ .+|+..|
T Consensus 118 ~~~~~~~~~~~~~~~~~~g~~~~~i~~~~p~~~~~l~~~~Rl~~R 162 (287)
T 1gvn_B 118 TGRTTDVPIQTATMLQAKGYETKMYVMAVPKINSYLGTIERYETM 162 (287)
T ss_dssp CCCCSHHHHHHHHHHHTTTCEEEEEEECCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhCCCcEEEEEEECCHHHHHHHHHHHHHHH
Confidence 211111 1122233332 2 478999999999 8888653
No 94
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=98.78 E-value=8.9e-09 Score=86.79 Aligned_cols=84 Identities=14% Similarity=0.080 Sum_probs=54.3
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHHHHHhCCCCHHHHHHHhcchhhHHHHHHHHHHHhccCCcEEEeCCceeeCHhh
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFREKETEVLQKLSLMRQLVVSTGGGAVTRPIN 80 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~~~~~~g~~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~vi~~g~~~v~~~~~ 80 (193)
+|||||||+|+.|++.+|+.+++.|.+. .|..+...+...+.....+|+++.+ .....
T Consensus 266 ~pGSGKSTla~~L~~~~~~~~i~~D~~~-------------------~~~~~~~~~~~~l~~g~~vIiD~~~---~~~~~ 323 (416)
T 3zvl_A 266 FPGAGKSTFIQEHLVSAGYVHVNRDTLG-------------------SWQRCVSSCQAALRQGKRVVIDNTN---PDVPS 323 (416)
T ss_dssp CTTSSHHHHHHHHTGGGTCEECCGGGSC-------------------SHHHHHHHHHHHHHTTCCEEEESCC---CSHHH
T ss_pred CCCCCHHHHHHHHHHhcCcEEEccchHH-------------------HHHHHHHHHHHHHhcCCcEEEeCCC---CCHHH
Confidence 6999999999999999999999999861 0112222222333333445554322 12222
Q ss_pred H----Hhcc--C--CeEEEEECCHHHHHHHHhcc
Q 029455 81 W----RYMQ--K--GISVWLDVPLEALAQRIAAV 106 (193)
Q Consensus 81 ~----~~l~--~--~~vV~L~~~~~~~~~Rl~~~ 106 (193)
+ ..++ . ..+|||.+|.+++.+|+..|
T Consensus 324 r~~~~~~~~~~~~~~~~v~l~~~~e~l~~R~~~R 357 (416)
T 3zvl_A 324 RARYIQCAKDAGVPCRCFNFCATIEQARHNNRFR 357 (416)
T ss_dssp HHHHHHHHHHHTCCEEEEEECCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEEEEEeCCHHHHHHHHHhh
Confidence 2 2222 1 37899999999999999885
No 95
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=98.75 E-value=5.7e-08 Score=75.23 Aligned_cols=74 Identities=11% Similarity=0.008 Sum_probs=38.2
Q ss_pred cCCeEEEEECCHHHHHHHHhccCCCCCCccccCCCCChhHHHHHHHHHHHHHHHHHHhhccceeechhhhhhcccccCCC
Q 029455 85 QKGISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVSLENIAVKLGHKDVSS 164 (193)
Q Consensus 85 ~~~~vV~L~~~~~~~~~Rl~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~r~~~y~~~~~~i~~~~~~~~~~~iDt~~ 164 (193)
+++++|||++|+++..+|+ . +.| .... .. +..+++++.|.+....|.. ..+ +||+ +
T Consensus 145 ~PDl~I~Ldv~~e~~~~Ri-~---rdr--~E~~--~~---e~~~rv~~~y~~la~~~~~-~~~-----------vIDa-~ 200 (223)
T 3ld9_A 145 YPDITFIIDVDINESLSRS-C---KNG--YEFA--DM---EFYYRVRDGFYDIAKKNPH-RCH-----------VITD-K 200 (223)
T ss_dssp CCSEEEEEECC------------------------CH---HHHHHHHHHHHHHHHHCTT-TEE-----------EEES-S
T ss_pred CCCeEEEEeCCHHHHHHHh-c---cCc--cccc--hH---HHHHHHHHHHHHHHHHCCC-CEE-----------EEcC-C
Confidence 3589999999999999999 3 223 2210 11 2356666666554443321 222 3686 5
Q ss_pred CCHHHHHHHHHHHHHhhhc
Q 029455 165 LTPVTIAIEALEQIEGFLK 183 (193)
Q Consensus 165 ~~~~~~~~~i~~~~~~~~~ 183 (193)
.+++++ ++|.+.+.+.+.
T Consensus 201 ~sieeV-~~I~~~l~~~lg 218 (223)
T 3ld9_A 201 SETYDI-DDINFVHLEVIK 218 (223)
T ss_dssp CSSSCC-CHHHHHHHHHHH
T ss_pred CCHHHH-HHHHHHHHHHHh
Confidence 899999 999988887763
No 96
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=98.69 E-value=1.5e-07 Score=72.57 Aligned_cols=77 Identities=10% Similarity=0.112 Sum_probs=51.6
Q ss_pred CCeEEEE-ECCHHHHHHHHhccCCCCCCccccCCCCChhHHHHHHHHHHHHHHHHHH---hhccceeechhhhhhccccc
Q 029455 86 KGISVWL-DVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAY---ANANARVSLENIAVKLGHKD 161 (193)
Q Consensus 86 ~~~vV~L-~~~~~~~~~Rl~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~r~~~y---~~~~~~i~~~~~~~~~~~iD 161 (193)
++++||| ++|+++..+|+..+ ..| .+. . +..+++++.|.+....+ .....+ +||
T Consensus 126 PDlti~L~dv~pe~~~~R~~~~--~dr--~E~----~---~f~~rvr~~Y~~la~~~~~~~~~~~~-----------vID 183 (216)
T 3tmk_A 126 PDLTLFLSTQDVDNNAEKSGFG--DER--YET----V---KFQEKVKQTFMKLLDKEIRKGDESIT-----------IVD 183 (216)
T ss_dssp CSEEEEEECSCCSCGGGCCSSS--CCT--TCC----H---HHHHHHHHHHHHHHHHHHHTTCCSEE-----------EEE
T ss_pred CCEEEEEeCCCHHHHHHHhccC--ccc--ccH----H---HHHHHHHHHHHHHHHhccccCCCCEE-----------EEe
Confidence 4899999 99999999997542 112 111 1 24566666665544331 112232 489
Q ss_pred CCCCCHHHHHHHHHHHHHhhhcc
Q 029455 162 VSSLTPVTIAIEALEQIEGFLKE 184 (193)
Q Consensus 162 t~~~~~~~~~~~i~~~~~~~~~~ 184 (193)
+...+++++.+.|.+.+...+..
T Consensus 184 ~a~~s~eeV~~~I~~~i~~~l~~ 206 (216)
T 3tmk_A 184 VTNKGIQEVEALIWQIVEPVLST 206 (216)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHHHHHhc
Confidence 66799999999999999988765
No 97
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=98.64 E-value=1.8e-08 Score=86.19 Aligned_cols=131 Identities=22% Similarity=0.211 Sum_probs=68.4
Q ss_pred CCCCchHHHHHHHHHhcCCcE-----eechHHHHHHhCCC-CHHHHHHHhcchhhHHHHHHHHH------H-Hh-ccCCc
Q 029455 1 MMGSGKTTVGKILSGVLGYSF-----FDCDTLIEQSVDGT-SVAEIFKLYGEGFFREKETEVLQ------K-LS-LMRQL 66 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~-----~d~d~~~~~~~~g~-~~~~~~~~~~~~~~~~~e~~~~~------~-l~-~~~~~ 66 (193)
+|||||||+++.|++.+++.+ ++.|.+..... |. ...+++...|...++..+..++. . +. ..+..
T Consensus 47 lpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~~-g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~~~l~~~~G~~ 125 (469)
T 1bif_A 47 LPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMV-KTYKSFEFFLPDNEEGLKIRKQCALAALNDVRKFLSEEGGHV 125 (469)
T ss_dssp CTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHH-CSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHHHHHTTCCSE
T ss_pred CCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhhc-cCCCcccccCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCE
Confidence 599999999999999887544 44555666655 43 22344444454334333222111 1 21 22323
Q ss_pred EEEeCCceeeCHhhHH----hccC--CeEEEEE---CCHHHHHHHHhccCCCCCCccccCCCCChhHHHHHHHHHHHHHH
Q 029455 67 VVSTGGGAVTRPINWR----YMQK--GISVWLD---VPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEER 137 (193)
Q Consensus 67 vi~~g~~~v~~~~~~~----~l~~--~~vV~L~---~~~~~~~~Rl~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~r 137 (193)
+|..... ...+.+. .++. ..++||. .+++.+.+|+..+. ..||.... .+ .+...+.+.+|
T Consensus 126 vV~D~tn--~~~~~R~~~~~~~~~~~~~vv~l~~~~~~~~~i~~r~~~~~-~~rp~~~~---~~-----~e~~~~~~~~R 194 (469)
T 1bif_A 126 AVFDATN--TTRERRAMIFNFGEQNGYKTFFVESICVDPEVIAANIVQVK-LGSPDYVN---RD-----SDEATEDFMRR 194 (469)
T ss_dssp EEEESCC--CSHHHHHHHHHHHHHHTCEEEEEEECCCCHHHHHHHHHHHT-TTSTTTTT---SC-----HHHHHHHHHHH
T ss_pred EEEeCCC--CCHHHHHHHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHhh-hcCCcccC---CC-----HHHHHHHHHHH
Confidence 3333211 1222222 2222 3577887 56888888887532 24565443 11 23344556667
Q ss_pred HHHHhh
Q 029455 138 GEAYAN 143 (193)
Q Consensus 138 ~~~y~~ 143 (193)
...|..
T Consensus 195 ~~~y~~ 200 (469)
T 1bif_A 195 IECYEN 200 (469)
T ss_dssp HHHHHT
T ss_pred HHHhcc
Confidence 777765
No 98
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=98.63 E-value=1e-07 Score=72.40 Aligned_cols=29 Identities=31% Similarity=0.442 Sum_probs=25.5
Q ss_pred CCCCchHHHHHHHHHhcC--CcEeechHHHH
Q 029455 1 MMGSGKTTVGKILSGVLG--YSFFDCDTLIE 29 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg--~~~~d~d~~~~ 29 (193)
++||||||+++.|+..++ +.+++.|.++.
T Consensus 14 ~~GsGKSTl~~~l~~~~~~~i~~v~~d~~~~ 44 (211)
T 3asz_A 14 GTASGKTTLAQALARTLGERVALLPMDHYYK 44 (211)
T ss_dssp STTSSHHHHHHHHHHHHGGGEEEEEGGGCBC
T ss_pred CCCCCHHHHHHHHHHHhCCCeEEEecCcccc
Confidence 689999999999999888 89999887653
No 99
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=98.62 E-value=4.2e-07 Score=70.68 Aligned_cols=21 Identities=10% Similarity=0.053 Sum_probs=19.1
Q ss_pred CCeEEEEECCHHHHHHHHhcc
Q 029455 86 KGISVWLDVPLEALAQRIAAV 106 (193)
Q Consensus 86 ~~~vV~L~~~~~~~~~Rl~~~ 106 (193)
.+++|||++|++++.+|+.+|
T Consensus 150 pd~~i~l~~~~~~~~~R~~~R 170 (241)
T 2ocp_A 150 LHGFIYLQASPQVCLKRLYQR 170 (241)
T ss_dssp CCEEEEEECCHHHHHHHHHHS
T ss_pred CCEEEEEECCHHHHHHHHHhc
Confidence 489999999999999999874
No 100
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.57 E-value=4.3e-07 Score=70.22 Aligned_cols=78 Identities=17% Similarity=0.101 Sum_probs=34.9
Q ss_pred CCeEEEEECCHHHHHHHHhccCCCCCCccccCCCCChhHHHHHHHHHHHHHHHHHH--hh-ccceeechhhhhhcccccC
Q 029455 86 KGISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAY--AN-ANARVSLENIAVKLGHKDV 162 (193)
Q Consensus 86 ~~~vV~L~~~~~~~~~Rl~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~r~~~y--~~-~~~~i~~~~~~~~~~~iDt 162 (193)
.+++|||++|++++++|+.+| .|+.... ... +..++++..+.++...| .. ++.+ +||+
T Consensus 147 pD~vi~Ld~~~e~~~~Ri~~R---~r~~e~~--~~~---~~~~rv~~~~~~~~~~~~~~~~~~~~-----------vId~ 207 (230)
T 2vp4_A 147 ADLIIYLRTSPEVAYERIRQR---ARSEESC--VPL---KYLQELHELHEDWLIHQRRPQSCKVL-----------VLDA 207 (230)
T ss_dssp CSEEEEEECCHHHHHHHHHHH---CCGGGTT--CCH---HHHHHHHHHHHHHHTSCCSSCCCEEE-----------EEEC
T ss_pred CCEEEEEeCCHHHHHHHHHHc---CCccccc--CcH---HHHHHHHHHHHHHHHHhcccCCCCEE-----------EEEC
Confidence 379999999999999999874 3432221 010 23556666665543222 12 2222 3686
Q ss_pred CCCCHHHHHHHHHHHHHhhhc
Q 029455 163 SSLTPVTIAIEALEQIEGFLK 183 (193)
Q Consensus 163 ~~~~~~~~~~~i~~~~~~~~~ 183 (193)
+.+++++.+.|.+.+.+.+.
T Consensus 208 -~~~~eev~~~I~~~l~~~~~ 227 (230)
T 2vp4_A 208 -DLNLENIGTEYQRSESSIFD 227 (230)
T ss_dssp -CC------------------
T ss_pred -CCCHHHHHHHHHHHHHHHhh
Confidence 57999999999998876654
No 101
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.53 E-value=4.2e-07 Score=68.46 Aligned_cols=68 Identities=18% Similarity=0.135 Sum_probs=41.2
Q ss_pred CeEEEEEC-CHHHHHHHHhccCCCCCCccccCCCCChhHHHHHHHHHHHHHHHHHHhhccceeechhhhhhcccccCCCC
Q 029455 87 GISVWLDV-PLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVSLENIAVKLGHKDVSSL 165 (193)
Q Consensus 87 ~~vV~L~~-~~~~~~~Rl~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~r~~~y~~~~~~i~~~~~~~~~~~iDt~~~ 165 (193)
..+||+.+ |++++.+|+.+|+ +. .. . .....+.....+ ...+..+|.+| +++
T Consensus 119 ~~~v~~~~~~~e~l~~Rl~~R~---~~--~~---~----~i~~rl~~~~~~-~~~~~~~d~vi------------~n~-- 171 (205)
T 3tr0_A 119 ALSIFILPPSIEALRERLIKRR---QD--DT---A----IIEQRLALAREE-MAHYKEFDYLV------------VND-- 171 (205)
T ss_dssp CEEEEEECSCHHHHHHHHHTCT---TS--CS---S----THHHHHHHHHHH-HTTGGGCSEEE------------ECS--
T ss_pred cEEEEEECcCHHHHHHHHHHhC---CC--CH---H----HHHHHHHHHHHH-HhcccCCCEEE------------ECC--
Confidence 46677766 5999999999742 21 11 1 133444443221 22334477776 333
Q ss_pred CHHHHHHHHHHHHHhh
Q 029455 166 TPVTIAIEALEQIEGF 181 (193)
Q Consensus 166 ~~~~~~~~i~~~~~~~ 181 (193)
+++++.+.+...+...
T Consensus 172 ~~~~~~~~l~~~i~~~ 187 (205)
T 3tr0_A 172 NFDQAVQNLIHIISAE 187 (205)
T ss_dssp SHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 8999999999888643
No 102
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=98.53 E-value=3.9e-07 Score=73.20 Aligned_cols=29 Identities=17% Similarity=0.286 Sum_probs=23.3
Q ss_pred CCCCchHHHHHHHHHhcC-----CcEeechHHHH
Q 029455 1 MMGSGKTTVGKILSGVLG-----YSFFDCDTLIE 29 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg-----~~~~d~d~~~~ 29 (193)
++||||||+++.|++.+| ++++++|.+++
T Consensus 13 ~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~r 46 (290)
T 1a7j_A 13 SSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHR 46 (290)
T ss_dssp CC---CCTHHHHHHHHHHHHTCCEEEEEGGGGBS
T ss_pred CCCCCHHHHHHHHHHHHhhcCCCeeEeecchhhc
Confidence 689999999999999888 78999999874
No 103
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=98.50 E-value=7.2e-08 Score=79.03 Aligned_cols=100 Identities=9% Similarity=0.130 Sum_probs=54.6
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHH--HHHHh-----------CCCC-----HHHHHHHhcchhhHHHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTL--IEQSV-----------DGTS-----VAEIFKLYGEGFFREKETEVLQKLSL 62 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~--~~~~~-----------~g~~-----~~~~~~~~~~~~~~~~e~~~~~~l~~ 62 (193)
|+||||||+|+.|++.++..++++|.+ ++.+. .|.+ +.+.....+...|.......+..+..
T Consensus 15 ptgSGKTtla~~La~~l~~~iis~Ds~qvYr~~~i~Takp~~eE~~~v~hhl~di~~~~~~~~~~dF~~~a~~~i~~i~~ 94 (340)
T 3d3q_A 15 PTASGKTELSIEVAKKFNGEIISGDSMQVYQGMDIGTAKVTTEEMEGIPHYMIDILPPDASFSAYEFKKRAEKYIKDITR 94 (340)
T ss_dssp STTSSHHHHHHHHHHHTTEEEEECCSSTTBTTCCTTTTCCCTTTTTTCCEESSSCBCTTSCCCHHHHHHHHHHHHHHHHH
T ss_pred CCcCcHHHHHHHHHHHcCCceeccccccccccccccccCCCHHHHHHHHHHHHHHhCCccccCHHHHHHHHHHHHHHHHh
Confidence 689999999999999999999999987 32210 0111 00100011223344444445555554
Q ss_pred cCCcEEEeCCceeeCHhhHHhccCCeEEEEE-CCHHH---HHHHHh
Q 029455 63 MRQLVVSTGGGAVTRPINWRYMQKGISVWLD-VPLEA---LAQRIA 104 (193)
Q Consensus 63 ~~~~vi~~g~~~v~~~~~~~~l~~~~vV~L~-~~~~~---~~~Rl~ 104 (193)
.+..+|..|+..++..... .++.+|+. ++++. +.+|+.
T Consensus 95 ~g~~~IlvGGt~ly~~~l~----~~l~~~~~~~d~~~~~Rlrrrl~ 136 (340)
T 3d3q_A 95 RGKVPIIAGGTGLYIQSLL----YNYAFEDESISEDKMKQVKLKLK 136 (340)
T ss_dssp TTCEEEEECCCHHHHHHHH----BCSCCC---CCHHHHHHHHHHHH
T ss_pred CCCcEEEECChhhhHHHHH----hcccccCCCCChHHHHHHHHHHH
Confidence 5566666665443323221 23337777 88873 445553
No 104
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=98.43 E-value=4.3e-06 Score=65.10 Aligned_cols=27 Identities=30% Similarity=0.405 Sum_probs=22.6
Q ss_pred CCCCchHHHHHHHHHhcCCc----------EeechHH
Q 029455 1 MMGSGKTTVGKILSGVLGYS----------FFDCDTL 27 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~----------~~d~d~~ 27 (193)
|+||||||+++.|+..+|.. +++.|.+
T Consensus 33 ~~GsGKSTl~k~L~~~lG~~~~~~~~~~i~~v~~d~~ 69 (245)
T 2jeo_A 33 GTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDRF 69 (245)
T ss_dssp STTSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEGGGG
T ss_pred CCCCCHHHHHHHHHHHhchhcccccCCceEEEeCCcC
Confidence 68999999999999988865 6777654
No 105
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=98.33 E-value=1.1e-07 Score=77.49 Aligned_cols=70 Identities=19% Similarity=0.260 Sum_probs=46.3
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHHHHHhCCCC-------HHH-------------HHHHhcchhhHHHHHHHHHHH
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTS-------VAE-------------IFKLYGEGFFREKETEVLQKL 60 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~~~~~~g~~-------~~~-------------~~~~~~~~~~~~~e~~~~~~l 60 (193)
|+||||||+|+.||+++|..++++|.+..- +|++ ..+ +...++...|+......+.++
T Consensus 13 ptGsGKTtla~~La~~l~~~iis~Ds~qvy--~~~~igTakp~~~e~~gvph~lid~~~~~~~~~~~~F~~~a~~~i~~i 90 (323)
T 3crm_A 13 PTAAGKTDLAMALADALPCELISVDSALIY--RGMDIGTAKPSRELLARYPHRLIDIRDPAESYSAAEFRADALAAMAKA 90 (323)
T ss_dssp CTTSCHHHHHHHHHHHSCEEEEEECTTTTB--TTCCTTTTCCCHHHHHHSCEETSSCBCTTSCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHcCCcEEeccchhhh--cCCCcccCCCCHHHHcCCCEEEeeccCcccccCHHHHHHHHHHHHHHH
Confidence 799999999999999999999999986321 1111 111 111223345666666677777
Q ss_pred hccCCcEEEeCC
Q 029455 61 SLMRQLVVSTGG 72 (193)
Q Consensus 61 ~~~~~~vi~~g~ 72 (193)
...+..+|.+|+
T Consensus 91 ~~~g~~~IlvGG 102 (323)
T 3crm_A 91 TARGRIPLLVGG 102 (323)
T ss_dssp HHTTCEEEEEES
T ss_pred HHcCCeEEEECC
Confidence 666666776765
No 106
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.32 E-value=3.4e-07 Score=69.72 Aligned_cols=68 Identities=22% Similarity=0.177 Sum_probs=37.3
Q ss_pred CeEEEEECC-HHHHHHHHhccCCCCCCccccCCCCChhHHHHHHHHHHHHHHHHHHhhccceeechhhhhhcccccCCCC
Q 029455 87 GISVWLDVP-LEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVSLENIAVKLGHKDVSSL 165 (193)
Q Consensus 87 ~~vV~L~~~-~~~~~~Rl~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~r~~~y~~~~~~i~~~~~~~~~~~iDt~~~ 165 (193)
..+||+..| .+++.+|+.+| .... .+ +..+.+.....+ ...+..+|.+| +| +
T Consensus 121 ~~~i~i~~ps~~~l~~Rl~~R-----~~~~----~e---~i~~Rl~~~~~e-~~~~~~~d~vi-----------vN-~-- 173 (208)
T 3tau_A 121 GIFIFLTPPDLSELKNRIIGR-----GTES----ME---VVEERMETAKKE-IEMMASYDYAV-----------VN-D-- 173 (208)
T ss_dssp SEEEEEECTTTTTSSCC------------C----CH---HHHHHHHHHHHH-HHHGGGSSEEE-----------EC-S--
T ss_pred eEEEEEeCCCHHHHHHHHHhc-----CCCC----HH---HHHHHHHHHHHH-HHhhccCCEEE-----------EC-c--
Confidence 467888866 88999999863 2111 11 233444433221 23344477776 23 3
Q ss_pred CHHHHHHHHHHHHHhh
Q 029455 166 TPVTIAIEALEQIEGF 181 (193)
Q Consensus 166 ~~~~~~~~i~~~~~~~ 181 (193)
+.++++++|...+...
T Consensus 174 ~~~~~~~~l~~~i~~~ 189 (208)
T 3tau_A 174 VVANAVQKIKGIVETE 189 (208)
T ss_dssp SHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 5999999998888654
No 107
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=98.27 E-value=1.8e-06 Score=74.39 Aligned_cols=26 Identities=8% Similarity=0.156 Sum_probs=23.6
Q ss_pred CCCCchHHHHHHHHHhcCC-------cEeechH
Q 029455 1 MMGSGKTTVGKILSGVLGY-------SFFDCDT 26 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~-------~~~d~d~ 26 (193)
+|||||||||+.||++|+. .++|.|.
T Consensus 403 lsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD~ 435 (511)
T 1g8f_A 403 SLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN 435 (511)
T ss_dssp TCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT
T ss_pred cCCCCHHHHHHHHHHHHHHhhcCcceEEecCCC
Confidence 5899999999999999996 6888887
No 108
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.24 E-value=2e-06 Score=64.98 Aligned_cols=20 Identities=30% Similarity=0.330 Sum_probs=8.5
Q ss_pred CeEEEEECCHHHHHHHHhcc
Q 029455 87 GISVWLDVPLEALAQRIAAV 106 (193)
Q Consensus 87 ~~vV~L~~~~~~~~~Rl~~~ 106 (193)
+.+|||+||.+++.+|+.+|
T Consensus 145 d~~i~v~~~~~~~~~R~~~R 164 (201)
T 1rz3_A 145 DFVVYLDCPREIRFARENDQ 164 (201)
T ss_dssp SEEEEECCC-----------
T ss_pred CEEEEEeCCHHHHHHHHhcC
Confidence 68999999999999999873
No 109
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.17 E-value=7.6e-07 Score=67.04 Aligned_cols=17 Identities=35% Similarity=0.202 Sum_probs=15.6
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
|+||||||+++.|++.+
T Consensus 14 ~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 14 PSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp STTSCHHHHHHHHHHCT
T ss_pred CCCCCHHHHHHHHHHhh
Confidence 69999999999999866
No 110
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=98.09 E-value=2e-07 Score=70.75 Aligned_cols=20 Identities=25% Similarity=0.197 Sum_probs=18.3
Q ss_pred CeEEEEECCHHHHHHHHhcc
Q 029455 87 GISVWLDVPLEALAQRIAAV 106 (193)
Q Consensus 87 ~~vV~L~~~~~~~~~Rl~~~ 106 (193)
+.+|||++|++++.+|+..|
T Consensus 134 d~~i~l~~~~~~~~~R~~~R 153 (214)
T 1gtv_A 134 DWQVLLAVSAELAGERSRGR 153 (214)
T ss_dssp EEEEEEEEEHHHHHHHHHHH
T ss_pred CEEEEEeCCHHHHHHHHHcc
Confidence 67999999999999999874
No 111
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.06 E-value=8.7e-06 Score=61.75 Aligned_cols=27 Identities=30% Similarity=0.399 Sum_probs=22.0
Q ss_pred CCCCchHHHHHHHHHhcC-----CcEeechHH
Q 029455 1 MMGSGKTTVGKILSGVLG-----YSFFDCDTL 27 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg-----~~~~d~d~~ 27 (193)
++||||||+++.|+..+. ..++..|..
T Consensus 30 ~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~ 61 (208)
T 3c8u_A 30 APGSGKSTLSNPLAAALSAQGLPAEVVPMDGF 61 (208)
T ss_dssp CTTSCTHHHHHHHHHHHHHTTCCEEEEESGGG
T ss_pred CCCCCHHHHHHHHHHHHhhcCCceEEEecCCC
Confidence 689999999999998875 566776654
No 112
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=98.02 E-value=1.1e-07 Score=78.22 Aligned_cols=52 Identities=23% Similarity=0.302 Sum_probs=44.4
Q ss_pred CCCCchHHHHHHHHHhcCCcE--------------------eechHHHHHHhCCCCHHHHHHHhcchhhHHHHH
Q 029455 1 MMGSGKTTVGKILSGVLGYSF--------------------FDCDTLIEQSVDGTSVAEIFKLYGEGFFREKET 54 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~--------------------~d~d~~~~~~~~g~~~~~~~~~~~~~~~~~~e~ 54 (193)
||||||||+++.|++.++++| +|+|..+.... |.++.+++...|+ .|+..|.
T Consensus 32 ~~G~GKTTl~~~la~~l~~~f~~l~a~~~g~~~ir~~~~~a~d~D~~I~~~~-g~~i~~if~~~ge-~fr~~E~ 103 (359)
T 2ga8_A 32 SPGSGKSTIAEELCQIINEKYHTFLSEHPNVIEVNDRLKPMVNLVDSLKTLQ-PNKVAEMIENQGL-FKDHVED 103 (359)
T ss_dssp CTTSSHHHHHHHHHHHHHHHHHHHHHHSTTCCCEECTTSCCCCSSTTSEECC-HHHHHHHHHTTTC-CGGGTTC
T ss_pred CCCCcHHHHHHHHHHHhCCCeeeecccccchHHHHHHHHhhhhhhhHHHHHh-CccHHHHHHHhcc-cchHHHh
Confidence 699999999999999999998 88888876666 7788889988887 7776654
No 113
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.95 E-value=3.1e-05 Score=63.00 Aligned_cols=28 Identities=21% Similarity=0.461 Sum_probs=22.7
Q ss_pred CCCCchHHHHHHHHHhcC-------CcEeechHHH
Q 029455 1 MMGSGKTTVGKILSGVLG-------YSFFDCDTLI 28 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg-------~~~~d~d~~~ 28 (193)
++||||||+++.|+..++ ..+++.|.+.
T Consensus 100 psGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~ 134 (321)
T 3tqc_A 100 SVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFL 134 (321)
T ss_dssp CTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGB
T ss_pred CCCCCHHHHHHHHHHHhcccCCCCeEEEEeecccc
Confidence 689999999999998775 4567788754
No 114
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.86 E-value=4.6e-06 Score=62.19 Aligned_cols=20 Identities=20% Similarity=0.356 Sum_probs=8.2
Q ss_pred CeEEEEECCH-HHHHHHHhcc
Q 029455 87 GISVWLDVPL-EALAQRIAAV 106 (193)
Q Consensus 87 ~~vV~L~~~~-~~~~~Rl~~~ 106 (193)
..+|||.+|. +++.+|+..|
T Consensus 115 ~~~i~i~~p~~~~l~~Rl~~R 135 (186)
T 3a00_A 115 ARFLFIAPPSVEDLKKRLEGR 135 (186)
T ss_dssp CEEEEEECSCC----------
T ss_pred eEEEEEECcCHHHHHHHHHhc
Confidence 5789999976 9999999874
No 115
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.72 E-value=3.7e-05 Score=57.67 Aligned_cols=18 Identities=33% Similarity=0.276 Sum_probs=15.9
Q ss_pred CCCCchHHHHHHHHHhcC
Q 029455 1 MMGSGKTTVGKILSGVLG 18 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg 18 (193)
|+|||||||.+.|.+++.
T Consensus 9 PSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 9 PSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CTTSSHHHHHHHHHHHCT
T ss_pred CCCCCHHHHHHHHHHhCC
Confidence 799999999999987763
No 116
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.70 E-value=3.3e-05 Score=59.39 Aligned_cols=67 Identities=12% Similarity=-0.010 Sum_probs=33.1
Q ss_pred eEEEEE-CCHHHHHHHHhccCCCCCCccccCCCCChhHHHHHHHHHHHHHHHHHHhhccceeechhhhhhcccccCCCCC
Q 029455 88 ISVWLD-VPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVSLENIAVKLGHKDVSSLT 166 (193)
Q Consensus 88 ~vV~L~-~~~~~~~~Rl~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~r~~~y~~~~~~i~~~~~~~~~~~iDt~~~~ 166 (193)
..||+. ++.+++.+|+..| +.... . ...+.+.....+ ...+..+|.+| +++ +
T Consensus 142 ~~v~v~~~~~~~l~~Rl~~R-----~~~~~---~----~i~~rl~~~~~~-~~~~~~~d~vI------------~n~--~ 194 (231)
T 3lnc_A 142 VSIFIMPPSMEELRRRLCGR-----RADDS---E----VVEARLKGAAFE-ISHCEAYDYVI------------VNE--D 194 (231)
T ss_dssp EEEEEECSCHHHHHHC--------------------------CHHHHHHH-HTTGGGSSEEE------------ECS--S
T ss_pred EEEEEECCcHHHHHHHHHHc-----CCCCH---H----HHHHHHHHHHHH-HhhhcCCeEEE------------ECc--C
Confidence 456664 5788999999863 21111 0 122333333221 11223467776 443 6
Q ss_pred HHHHHHHHHHHHHhh
Q 029455 167 PVTIAIEALEQIEGF 181 (193)
Q Consensus 167 ~~~~~~~i~~~~~~~ 181 (193)
++++.+.+...+...
T Consensus 195 ~e~~~~~l~~~i~~~ 209 (231)
T 3lnc_A 195 IEETADRISNILRAE 209 (231)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999998888654
No 117
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=97.58 E-value=5.1e-05 Score=61.48 Aligned_cols=27 Identities=22% Similarity=0.265 Sum_probs=25.5
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHH
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTL 27 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~ 27 (193)
|+||||||++..||++++..++++|..
T Consensus 11 ptgsGKt~la~~La~~~~~~iis~Ds~ 37 (322)
T 3exa_A 11 PTAVGKTKTSVMLAKRLNGEVISGDSM 37 (322)
T ss_dssp CTTSCHHHHHHHHHHTTTEEEEECCGG
T ss_pred CCcCCHHHHHHHHHHhCccceeecCcc
Confidence 789999999999999999999999975
No 118
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=97.48 E-value=0.00049 Score=52.18 Aligned_cols=100 Identities=15% Similarity=0.171 Sum_probs=54.2
Q ss_pred CCCCchHHHHHHHHHhcC---CcEeechHHHHHH-h--CCCCHHHHHHH-hcchhhHHHHHHH------------HHHHh
Q 029455 1 MMGSGKTTVGKILSGVLG---YSFFDCDTLIEQS-V--DGTSVAEIFKL-YGEGFFREKETEV------------LQKLS 61 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg---~~~~d~d~~~~~~-~--~g~~~~~~~~~-~~~~~~~~~e~~~------------~~~l~ 61 (193)
+|||||+|+|+.|.+.+| ++++...+.+++. + .|.++.+.+.. .-.+.++.....+ +..+.
T Consensus 19 k~~SGKd~va~~l~~~~g~~~~~vv~msD~iK~~~a~~~gl~~~~~l~~~~ykE~~R~~m~~~g~~~R~~d~~~~~~~~~ 98 (202)
T 3ch4_B 19 KRKSGKDFVTEALQSRLGADVCAVLRLSGPLKEQYAQEHGLNFQRLLDTSTYKEAFRKDMIRWGEEKRQADPGFFCRKIV 98 (202)
T ss_dssp CTTSSHHHHHHHHHHHHCTTTEEEECTHHHHHHHHHHTTTCCCC-------CCSSHHHHHHHHHHHHHHHCTTTTHHHHS
T ss_pred CCCCChHHHHHHHHHHcCCCCceEEEccHHHHHHHHHHcCCCchhhcchhhhHHHHHHHHHHHHHHHHhcCchHHHHHHH
Confidence 589999999999988785 7789988877742 2 25443332211 0011122111100 11111
Q ss_pred c--cCCcEEEeCCceeeCHhhHHhccC-----CeEEEEECCHHHHHHHH
Q 029455 62 L--MRQLVVSTGGGAVTRPINWRYMQK-----GISVWLDVPLEALAQRI 103 (193)
Q Consensus 62 ~--~~~~vi~~g~~~v~~~~~~~~l~~-----~~vV~L~~~~~~~~~Rl 103 (193)
. ....+|.+| +....-.++++. -.+|.+.++++++.+|.
T Consensus 99 ~~~~~~~vII~d---vR~~~Ev~~fr~~~g~~~~iirI~as~~~R~~Rg 144 (202)
T 3ch4_B 99 EGISQPIWLVSD---TRRVSDIQWFREAYGAVTQTVRVVALEQSRQQRG 144 (202)
T ss_dssp BTCCCSEEEECC---CCSHHHHHHHHHHHGGGEEEEEEEECHHHHHHTT
T ss_pred HhcCCCcEEEeC---CCCHHHHHHHHHhCCCcEEEEEEECCHHHHHHHh
Confidence 1 123455544 333333344431 25799999999999995
No 119
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=97.17 E-value=0.00014 Score=60.81 Aligned_cols=26 Identities=19% Similarity=0.316 Sum_probs=24.8
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechH
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDT 26 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~ 26 (193)
|+||||||++..|++.++..++++|.
T Consensus 10 ptgsGKttla~~La~~~~~~iis~Ds 35 (409)
T 3eph_A 10 TTGVGKSQLSIQLAQKFNGEVINSDS 35 (409)
T ss_dssp CSSSSHHHHHHHHHHHHTEEEEECCT
T ss_pred cchhhHHHHHHHHHHHCCCeEeecCc
Confidence 78999999999999999999999987
No 120
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=97.04 E-value=0.00025 Score=57.33 Aligned_cols=27 Identities=26% Similarity=0.321 Sum_probs=25.2
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHH
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTL 27 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~ 27 (193)
|+||||||++..||++++..+++.|..
T Consensus 18 ptgsGKt~la~~La~~~~~~iis~Ds~ 44 (316)
T 3foz_A 18 PTASGKTALAIELRKILPVELISVDSA 44 (316)
T ss_dssp CTTSCHHHHHHHHHHHSCEEEEECCTT
T ss_pred CCccCHHHHHHHHHHhCCCcEEecccc
Confidence 789999999999999999999999874
No 121
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.03 E-value=0.00025 Score=56.62 Aligned_cols=25 Identities=16% Similarity=0.151 Sum_probs=21.8
Q ss_pred CCCCchHHHHHHHHHhcCCcEeech
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCD 25 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d 25 (193)
|||+|||++|+.+|+.+|.+++..+
T Consensus 44 ppGtGKT~la~aiA~~l~~~~i~v~ 68 (293)
T 3t15_A 44 GKGQGKSFQCELVFRKMGINPIMMS 68 (293)
T ss_dssp CTTSCHHHHHHHHHHHHTCCCEEEE
T ss_pred CCCCCHHHHHHHHHHHhCCCEEEEe
Confidence 7999999999999999998776543
No 122
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.93 E-value=0.00038 Score=58.67 Aligned_cols=25 Identities=24% Similarity=0.329 Sum_probs=22.7
Q ss_pred CCCCchHHHHHHHHHhcCCcEeech
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCD 25 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d 25 (193)
|||||||++|+.+|..+|++++..+
T Consensus 214 PPGtGKT~lakAiA~~~~~~~~~v~ 238 (428)
T 4b4t_K 214 PPGTGKTMLVKAVANSTKAAFIRVN 238 (428)
T ss_dssp CTTTTHHHHHHHHHHHHTCEEEEEE
T ss_pred CCCCCHHHHHHHHHHHhCCCeEEEe
Confidence 8999999999999999999887644
No 123
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=96.90 E-value=0.0006 Score=53.14 Aligned_cols=30 Identities=17% Similarity=0.181 Sum_probs=25.6
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHHHH
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQ 30 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~~~ 30 (193)
++||||||+++.|++++|++++..++.+++
T Consensus 9 ~~~sGK~tv~~~l~~~~g~~~~~~~~~~~~ 38 (241)
T 1dek_A 9 VKRSGKDTTADFIMSNYSAVKYQLAGPIKD 38 (241)
T ss_dssp CTTSSHHHHHHHHHHHSCEEECCTTHHHHH
T ss_pred CCCCCHHHHHHHHHHhcCCeEEecChHHHH
Confidence 589999999999999899999987765543
No 124
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.90 E-value=0.00043 Score=58.46 Aligned_cols=25 Identities=20% Similarity=0.311 Sum_probs=22.5
Q ss_pred CCCCchHHHHHHHHHhcCCcEeech
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCD 25 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d 25 (193)
|||||||++|+.+|.++|++++..+
T Consensus 223 PPGTGKTllAkAiA~e~~~~f~~v~ 247 (434)
T 4b4t_M 223 PPGTGKTLLARACAAQTNATFLKLA 247 (434)
T ss_dssp CTTSSHHHHHHHHHHHHTCEEEEEE
T ss_pred cCCCCHHHHHHHHHHHhCCCEEEEe
Confidence 8999999999999999999887643
No 125
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.89 E-value=0.0005 Score=53.41 Aligned_cols=24 Identities=33% Similarity=0.521 Sum_probs=21.1
Q ss_pred CCCCchHHHHHHHHHhcCCcEeec
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDC 24 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~ 24 (193)
||||||||+++.|+..++.+++..
T Consensus 53 ~~GtGKT~la~~la~~~~~~~~~i 76 (257)
T 1lv7_A 53 PPGTGKTLLAKAIAGEAKVPFFTI 76 (257)
T ss_dssp CTTSCHHHHHHHHHHHHTCCEEEE
T ss_pred cCCCCHHHHHHHHHHHcCCCEEEE
Confidence 699999999999999999777653
No 126
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.88 E-value=0.00045 Score=57.72 Aligned_cols=25 Identities=20% Similarity=0.329 Sum_probs=22.6
Q ss_pred CCCCchHHHHHHHHHhcCCcEeech
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCD 25 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d 25 (193)
|||||||.+|+.+|.++|++++..+
T Consensus 190 PPGTGKTllAkAiA~e~~~~f~~v~ 214 (405)
T 4b4t_J 190 PPGTGKTLLARAVAHHTDCKFIRVS 214 (405)
T ss_dssp CSSSSHHHHHHHHHHHHTCEEEEEE
T ss_pred CCCCCHHHHHHHHHHhhCCCceEEE
Confidence 8999999999999999999987643
No 127
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.88 E-value=0.00046 Score=58.33 Aligned_cols=25 Identities=28% Similarity=0.446 Sum_probs=22.5
Q ss_pred CCCCchHHHHHHHHHhcCCcEeech
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCD 25 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d 25 (193)
|||||||++|+.+|..+|++++..+
T Consensus 223 PPGtGKTllAkAiA~e~~~~~~~v~ 247 (437)
T 4b4t_L 223 PPGTGKTLLAKAVAATIGANFIFSP 247 (437)
T ss_dssp CTTSSHHHHHHHHHHHHTCEEEEEE
T ss_pred CCCCcHHHHHHHHHHHhCCCEEEEe
Confidence 8999999999999999999887543
No 128
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=96.81 E-value=0.00061 Score=57.68 Aligned_cols=25 Identities=24% Similarity=0.442 Sum_probs=23.0
Q ss_pred CCCCchHHHHHHHHHhcCCcEeech
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCD 25 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d 25 (193)
||||||||+|+.||+.++.+++..+
T Consensus 58 ppGtGKT~lar~lA~~l~~~~~~v~ 82 (444)
T 1g41_A 58 PTGVGKTEIARRLAKLANAPFIKVE 82 (444)
T ss_dssp CTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCCHHHHHHHHHHHcCCCceeec
Confidence 7999999999999999999988765
No 129
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.80 E-value=0.00063 Score=55.73 Aligned_cols=25 Identities=36% Similarity=0.481 Sum_probs=22.7
Q ss_pred CCCCchHHHHHHHHHhcCCcEeech
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCD 25 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d 25 (193)
|||||||++|+.||+.++.+++..+
T Consensus 59 ppGtGKT~la~~ia~~~~~~~~~~~ 83 (363)
T 3hws_A 59 PTGSGKTLLAETLARLLDVPFTMAD 83 (363)
T ss_dssp CTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCCHHHHHHHHHHHcCCCEEEec
Confidence 7999999999999999999888654
No 130
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.75 E-value=0.00073 Score=52.29 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=20.9
Q ss_pred CCCCchHHHHHHHHHhcCCcEee
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFD 23 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d 23 (193)
|||+||||+++.+++.++.+++.
T Consensus 47 ~~GtGKT~la~~la~~~~~~~~~ 69 (262)
T 2qz4_A 47 PPGCGKTLLAKAVATEAQVPFLA 69 (262)
T ss_dssp CTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CCCCCHHHHHHHHHHHhCCCEEE
Confidence 69999999999999999987764
No 131
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.69 E-value=0.00078 Score=57.20 Aligned_cols=25 Identities=20% Similarity=0.268 Sum_probs=22.5
Q ss_pred CCCCchHHHHHHHHHhcCCcEeech
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCD 25 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d 25 (193)
|||||||++|+.+|.+++++++..+
T Consensus 251 PPGTGKTlLAkAiA~e~~~~fi~vs 275 (467)
T 4b4t_H 251 PPGTGKTLCARAVANRTDATFIRVI 275 (467)
T ss_dssp CTTSSHHHHHHHHHHHHTCEEEEEE
T ss_pred CCCCcHHHHHHHHHhccCCCeEEEE
Confidence 7999999999999999999887543
No 132
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.66 E-value=0.00088 Score=53.03 Aligned_cols=23 Identities=22% Similarity=0.395 Sum_probs=20.7
Q ss_pred CCCCchHHHHHHHHHhcCCcEee
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFD 23 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d 23 (193)
||||||||+++.+++.++.+++.
T Consensus 62 p~GtGKT~la~~la~~~~~~~~~ 84 (297)
T 3b9p_A 62 PPGNGKTLLARAVATECSATFLN 84 (297)
T ss_dssp SSSSCHHHHHHHHHHHTTCEEEE
T ss_pred cCCCCHHHHHHHHHHHhCCCeEE
Confidence 79999999999999999987754
No 133
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.66 E-value=0.00083 Score=54.00 Aligned_cols=27 Identities=22% Similarity=0.469 Sum_probs=22.5
Q ss_pred CCCCchHHHHHHHHHhcC-------CcEeechHH
Q 029455 1 MMGSGKTTVGKILSGVLG-------YSFFDCDTL 27 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg-------~~~~d~d~~ 27 (193)
++||||||+++.|+..++ +.++++|.+
T Consensus 88 ~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~ 121 (308)
T 1sq5_A 88 SVAVGKSTTARVLQALLSRWPEHRRVELITTDGF 121 (308)
T ss_dssp CTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred CCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCc
Confidence 689999999999998776 567777764
No 134
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.66 E-value=0.00082 Score=56.59 Aligned_cols=25 Identities=24% Similarity=0.343 Sum_probs=22.4
Q ss_pred CCCCchHHHHHHHHHhcCCcEeech
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCD 25 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d 25 (193)
|||||||.+|+.+|.+++++++..+
T Consensus 224 PPGTGKTlLAkAiA~e~~~~fi~v~ 248 (437)
T 4b4t_I 224 APGTGKTLLAKAVANQTSATFLRIV 248 (437)
T ss_dssp STTTTHHHHHHHHHHHHTCEEEEEE
T ss_pred CCCchHHHHHHHHHHHhCCCEEEEE
Confidence 7999999999999999999887543
No 135
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.65 E-value=0.00094 Score=53.36 Aligned_cols=32 Identities=22% Similarity=0.265 Sum_probs=24.9
Q ss_pred CCCCchHHHHHHHHHhcCCcEeec--hHHHHHHh
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDC--DTLIEQSV 32 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~--d~~~~~~~ 32 (193)
||||||||+++.|+..++.+++.. .++.....
T Consensus 57 p~GtGKT~la~ala~~~~~~~i~v~~~~l~~~~~ 90 (301)
T 3cf0_A 57 PPGCGKTLLAKAIANECQANFISIKGPELLTMWF 90 (301)
T ss_dssp SSSSSHHHHHHHHHHHTTCEEEEECHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhhhc
Confidence 699999999999999999887654 35544433
No 136
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.63 E-value=0.00098 Score=52.39 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=21.0
Q ss_pred CCCCchHHHHHHHHHhcCCcEee
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFD 23 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d 23 (193)
|||+||||+++.+++.++.+++.
T Consensus 59 ~~GtGKT~la~~la~~~~~~~~~ 81 (285)
T 3h4m_A 59 PPGTGKTLLAKAVATETNATFIR 81 (285)
T ss_dssp SSSSSHHHHHHHHHHHTTCEEEE
T ss_pred CCCCcHHHHHHHHHHHhCCCEEE
Confidence 69999999999999999988765
No 137
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.62 E-value=0.00077 Score=52.56 Aligned_cols=24 Identities=33% Similarity=0.513 Sum_probs=21.1
Q ss_pred CCCCchHHHHHHHHHhcCCcEeec
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDC 24 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~ 24 (193)
|||+||||+++.|++.++.+++..
T Consensus 52 ~~GtGKT~la~~la~~~~~~~~~v 75 (268)
T 2r62_A 52 PPGTGKTLLAKAVAGEAHVPFFSM 75 (268)
T ss_dssp SSCSSHHHHHHHHHHHHTCCCCCC
T ss_pred CCCCcHHHHHHHHHHHhCCCEEEe
Confidence 699999999999999999877643
No 138
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.61 E-value=0.001 Score=52.56 Aligned_cols=23 Identities=30% Similarity=0.478 Sum_probs=20.2
Q ss_pred CCCCchHHHHHHHHHhcCCcEee
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFD 23 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d 23 (193)
||||||||+++.|+..++..++.
T Consensus 52 p~GtGKTtLakala~~~~~~~i~ 74 (274)
T 2x8a_A 52 PPGCGKTLLAKAVANESGLNFIS 74 (274)
T ss_dssp STTSCHHHHHHHHHHHTTCEEEE
T ss_pred CCCCcHHHHHHHHHHHcCCCEEE
Confidence 79999999999999998876554
No 139
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.59 E-value=0.0011 Score=54.51 Aligned_cols=25 Identities=32% Similarity=0.339 Sum_probs=22.0
Q ss_pred CCCCchHHHHHHHHHhcCCcEeech
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCD 25 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d 25 (193)
|||+||||+|+.|++.++.+++..+
T Consensus 80 p~GtGKT~la~~la~~l~~~~~~~~ 104 (376)
T 1um8_A 80 PTGSGKTLMAQTLAKHLDIPIAISD 104 (376)
T ss_dssp CTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCCHHHHHHHHHHHhCCCEEEec
Confidence 6999999999999999998877544
No 140
>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1
Probab=96.56 E-value=0.012 Score=48.10 Aligned_cols=42 Identities=17% Similarity=0.052 Sum_probs=25.5
Q ss_pred CeEEEEECCHHHHHHHHhccCCCCCCccccCCCCChhHHHHHHHHHHHHHH
Q 029455 87 GISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEER 137 (193)
Q Consensus 87 ~~vV~L~~~~~~~~~Rl~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~r 137 (193)
+++|||++|+++.++|+.+| .|+... ++ . +..+++++.|.+.
T Consensus 168 DltI~Ld~~pe~~l~RI~~R---gR~~Er-ie--~---~yl~rvr~~Y~~l 209 (341)
T 1osn_A 168 TNLVVCTVSLPSHLSRVSKR---ARPGET-VN--L---PFVMVLRNVYIML 209 (341)
T ss_dssp CEEEEEECCHHHHHHHCC---------CC-CC--H---HHHHHHHHHHHHH
T ss_pred CeEEEEeCCHHHHHHHHHhh---CCCccc-CC--H---HHHHHHHHHHHHH
Confidence 78999999999999999764 343222 21 1 2356666666554
No 141
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.53 E-value=0.0012 Score=51.68 Aligned_cols=24 Identities=21% Similarity=0.294 Sum_probs=21.4
Q ss_pred CCCCchHHHHHHHHHhcCCcEeec
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDC 24 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~ 24 (193)
|||+|||++|+.+++.++.+++..
T Consensus 72 ~~GtGKT~la~~ia~~~~~~~~~i 95 (272)
T 1d2n_A 72 PPHSGKTALAAKIAEESNFPFIKI 95 (272)
T ss_dssp STTSSHHHHHHHHHHHHTCSEEEE
T ss_pred CCCCcHHHHHHHHHHHhCCCEEEE
Confidence 699999999999999999887653
No 142
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.48 E-value=0.0022 Score=46.95 Aligned_cols=30 Identities=33% Similarity=0.412 Sum_probs=22.6
Q ss_pred CCCCchHHHHHHHHHhc----C--CcEeechHHHHH
Q 029455 1 MMGSGKTTVGKILSGVL----G--YSFFDCDTLIEQ 30 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l----g--~~~~d~d~~~~~ 30 (193)
|+||||||+++.++..+ | +.+++..+++..
T Consensus 46 ~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~ 81 (180)
T 3ec2_A 46 SPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFR 81 (180)
T ss_dssp SSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHH
Confidence 68999999999998766 4 345666666543
No 143
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.46 E-value=0.0013 Score=52.96 Aligned_cols=25 Identities=24% Similarity=0.416 Sum_probs=22.0
Q ss_pred CCCCchHHHHHHHHHhcCCcEeech
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCD 25 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d 25 (193)
|||+|||++|+.+++.++.+++..+
T Consensus 59 ppGtGKT~la~aia~~~~~~~~~v~ 83 (322)
T 3eie_A 59 PPGTGKSYLAKAVATEANSTFFSVS 83 (322)
T ss_dssp SSSSCHHHHHHHHHHHHTCEEEEEE
T ss_pred CCCCcHHHHHHHHHHHHCCCEEEEc
Confidence 7999999999999999998876543
No 144
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.43 E-value=0.0016 Score=51.56 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=20.6
Q ss_pred CCCCchHHHHHHHHHhcCCcEee
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFD 23 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d 23 (193)
+||+|||++++.+++.++.+++.
T Consensus 58 ~~GtGKT~la~~la~~l~~~~~~ 80 (310)
T 1ofh_A 58 PTGVGKTEIARRLAKLANAPFIK 80 (310)
T ss_dssp CTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CCCCCHHHHHHHHHHHhCCCEEE
Confidence 69999999999999999987653
No 145
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.42 E-value=0.0017 Score=50.21 Aligned_cols=25 Identities=24% Similarity=0.410 Sum_probs=20.9
Q ss_pred CCCCchHHHHHHHHHhcCCcEeech
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCD 25 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d 25 (193)
||||||||+++.|+..++.+++..+
T Consensus 57 ~~G~GKTtl~~~i~~~~~~~~i~~~ 81 (254)
T 1ixz_A 57 PPGVGKTHLARAVAGEARVPFITAS 81 (254)
T ss_dssp CTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCCHHHHHHHHHHHhCCCEEEee
Confidence 7999999999999998887665433
No 146
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.35 E-value=0.0017 Score=47.83 Aligned_cols=18 Identities=17% Similarity=0.196 Sum_probs=15.9
Q ss_pred CCCCchHHHHHHHHHhcC
Q 029455 1 MMGSGKTTVGKILSGVLG 18 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg 18 (193)
|+||||||+++.|+..+.
T Consensus 13 psGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 13 AHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CTTSSHHHHHHHHHHHCT
T ss_pred CCCCCHHHHHHHHHhhCC
Confidence 799999999999998653
No 147
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.34 E-value=0.0018 Score=48.96 Aligned_cols=26 Identities=19% Similarity=0.104 Sum_probs=22.6
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHH
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTL 27 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~ 27 (193)
++||||||+|..|+++.+ ++++.|..
T Consensus 42 psGsGKStLA~~La~~g~-~iIsdDs~ 67 (205)
T 2qmh_A 42 DSGVGKSETALELVQRGH-RLIADDRV 67 (205)
T ss_dssp CCTTTTHHHHHHHHTTTC-EEEESSEE
T ss_pred CCCCCHHHHHHHHHHhCC-eEEecchh
Confidence 689999999999998766 88888864
No 148
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=96.33 E-value=0.0018 Score=53.06 Aligned_cols=25 Identities=24% Similarity=0.416 Sum_probs=22.0
Q ss_pred CCCCchHHHHHHHHHhcCCcEeech
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCD 25 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d 25 (193)
|||+|||++|+.+++.++.+++..+
T Consensus 92 ppGtGKT~la~ala~~~~~~~~~v~ 116 (355)
T 2qp9_X 92 PPGTGKSYLAKAVATEANSTFFSVS 116 (355)
T ss_dssp STTSCHHHHHHHHHHHHTCEEEEEE
T ss_pred CCCCcHHHHHHHHHHHhCCCEEEee
Confidence 6999999999999999998876543
No 149
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.29 E-value=0.002 Score=52.18 Aligned_cols=22 Identities=32% Similarity=0.406 Sum_probs=19.5
Q ss_pred CCCCchHHHHHHHHHhcCCcEe
Q 029455 1 MMGSGKTTVGKILSGVLGYSFF 22 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~ 22 (193)
||||||||+++.|+..++..+.
T Consensus 59 p~G~GKTTLa~~ia~~l~~~~~ 80 (334)
T 1in4_A 59 PPGLGKTTLAHIIASELQTNIH 80 (334)
T ss_dssp STTSSHHHHHHHHHHHHTCCEE
T ss_pred CCCCcHHHHHHHHHHHhCCCEE
Confidence 7999999999999999987553
No 150
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=96.25 E-value=0.0021 Score=54.41 Aligned_cols=25 Identities=28% Similarity=0.377 Sum_probs=21.6
Q ss_pred CCCCchHHHHHHHHHhcC--CcEeech
Q 029455 1 MMGSGKTTVGKILSGVLG--YSFFDCD 25 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg--~~~~d~d 25 (193)
|||+|||++|+.+|+.+| ++++..+
T Consensus 71 ppGtGKT~la~ala~~l~~~~~~~~~~ 97 (456)
T 2c9o_A 71 PPGTGKTALALAIAQELGSKVPFCPMV 97 (456)
T ss_dssp CTTSSHHHHHHHHHHHHCTTSCEEEEE
T ss_pred CCcCCHHHHHHHHHHHhCCCceEEEEe
Confidence 799999999999999999 7776543
No 151
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.22 E-value=0.0023 Score=51.70 Aligned_cols=23 Identities=26% Similarity=0.444 Sum_probs=19.8
Q ss_pred CCCCchHHHHHHHHHhc-CCcEee
Q 029455 1 MMGSGKTTVGKILSGVL-GYSFFD 23 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l-g~~~~d 23 (193)
|||+|||++|+.+|+.+ +.+++.
T Consensus 53 ppGtGKT~la~ala~~~~~~~~~~ 76 (322)
T 1xwi_A 53 PPGTGKSYLAKAVATEANNSTFFS 76 (322)
T ss_dssp SSSSCHHHHHHHHHHHTTSCEEEE
T ss_pred CCCccHHHHHHHHHHHcCCCcEEE
Confidence 79999999999999998 666653
No 152
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.19 E-value=0.0025 Score=52.20 Aligned_cols=23 Identities=39% Similarity=0.684 Sum_probs=20.9
Q ss_pred CCCCchHHHHHHHHHhcCCcEee
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFD 23 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d 23 (193)
|||+||||+++.+++.++.+++.
T Consensus 125 ppGtGKT~la~aia~~~~~~~~~ 147 (357)
T 3d8b_A 125 PPGTGKTLIGKCIASQSGATFFS 147 (357)
T ss_dssp STTSSHHHHHHHHHHHTTCEEEE
T ss_pred CCCCCHHHHHHHHHHHcCCeEEE
Confidence 69999999999999999988764
No 153
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.17 E-value=0.0028 Score=45.88 Aligned_cols=17 Identities=29% Similarity=0.305 Sum_probs=15.9
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
+||+||||+++.+++.+
T Consensus 51 ~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 51 EPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp CTTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 68999999999999986
No 154
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.17 E-value=0.0028 Score=49.84 Aligned_cols=25 Identities=24% Similarity=0.410 Sum_probs=20.9
Q ss_pred CCCCchHHHHHHHHHhcCCcEeech
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCD 25 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d 25 (193)
||||||||+++.|+..++..++..+
T Consensus 81 p~GtGKTtl~~~i~~~~~~~~i~~~ 105 (278)
T 1iy2_A 81 PPGVGKTHLARAVAGEARVPFITAS 105 (278)
T ss_dssp CTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred CCcChHHHHHHHHHHHcCCCEEEec
Confidence 6999999999999998887665543
No 155
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.15 E-value=0.0021 Score=46.58 Aligned_cols=17 Identities=29% Similarity=0.223 Sum_probs=15.9
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
+||+||||+++.+++.+
T Consensus 51 ~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 51 DPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp CGGGCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 68999999999999987
No 156
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.13 E-value=0.0029 Score=50.97 Aligned_cols=25 Identities=28% Similarity=0.284 Sum_probs=21.8
Q ss_pred CCCCchHHHHHHHHHhcCCcEeech
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCD 25 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d 25 (193)
+||+||||+++.+++.++.+++..+
T Consensus 63 ~~GtGKT~la~~ia~~~~~~~~~~~ 87 (338)
T 3pfi_A 63 PAGLGKTTLANIISYEMSANIKTTA 87 (338)
T ss_dssp STTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred cCCCCHHHHHHHHHHHhCCCeEEec
Confidence 6999999999999999998876543
No 157
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.09 E-value=0.0025 Score=57.68 Aligned_cols=25 Identities=28% Similarity=0.436 Sum_probs=22.5
Q ss_pred CCCCchHHHHHHHHHhcCCcEeech
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCD 25 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d 25 (193)
|||||||++|+.+|.++|.+++..+
T Consensus 246 PPGTGKT~LAraiA~elg~~~~~v~ 270 (806)
T 3cf2_A 246 PPGTGKTLIARAVANETGAFFFLIN 270 (806)
T ss_dssp CTTSCHHHHHHHHHTTTTCEEEEEE
T ss_pred CCCCCHHHHHHHHHHHhCCeEEEEE
Confidence 7999999999999999999887644
No 158
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.05 E-value=0.0031 Score=53.88 Aligned_cols=24 Identities=29% Similarity=0.527 Sum_probs=21.7
Q ss_pred CCCCchHHHHHHHHHhcCCcEeec
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDC 24 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~ 24 (193)
|||+||||+++.++..++.+++..
T Consensus 57 ppGtGKT~Laraia~~~~~~f~~i 80 (476)
T 2ce7_A 57 PPGTGKTLLARAVAGEANVPFFHI 80 (476)
T ss_dssp CTTSSHHHHHHHHHHHHTCCEEEE
T ss_pred CCCCCHHHHHHHHHHHcCCCeeeC
Confidence 799999999999999999888754
No 159
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.05 E-value=0.0024 Score=46.60 Aligned_cols=28 Identities=25% Similarity=0.113 Sum_probs=21.7
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHHHHH
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTLIEQ 30 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~~~~ 30 (193)
++||||||+++.+. .|..+++.|.+...
T Consensus 17 ~nGsGKSTl~~~~~--~~~~~~~~d~~~g~ 44 (171)
T 4gp7_A 17 SSGSGKSTFAKKHF--KPTEVISSDFCRGL 44 (171)
T ss_dssp CTTSCHHHHHHHHS--CGGGEEEHHHHHHH
T ss_pred CCCCCHHHHHHHHc--cCCeEEccHHHHHH
Confidence 68999999999875 46677877776533
No 160
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.05 E-value=0.0028 Score=46.84 Aligned_cols=21 Identities=38% Similarity=0.328 Sum_probs=18.3
Q ss_pred CCCCchHHHHHHHHHhcCCcE
Q 029455 1 MMGSGKTTVGKILSGVLGYSF 21 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~ 21 (193)
++||||||+.+.|+..+++.+
T Consensus 8 ~nGsGKTTLl~~l~g~l~i~~ 28 (178)
T 1ye8_A 8 EPGVGKTTLVKKIVERLGKRA 28 (178)
T ss_dssp CTTSSHHHHHHHHHHHHGGGE
T ss_pred CCCCCHHHHHHHHHHHhCCcC
Confidence 689999999999999887544
No 161
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.04 E-value=0.0032 Score=54.13 Aligned_cols=24 Identities=33% Similarity=0.570 Sum_probs=21.7
Q ss_pred CCCCchHHHHHHHHHhcCCcEeec
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDC 24 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~ 24 (193)
|||+||||+++.|++.+|++++..
T Consensus 85 ppGtGKTtla~~la~~l~~~~i~i 108 (516)
T 1sxj_A 85 PPGIGKTTAAHLVAQELGYDILEQ 108 (516)
T ss_dssp STTSSHHHHHHHHHHHTTCEEEEE
T ss_pred CCCCCHHHHHHHHHHHcCCCEEEE
Confidence 799999999999999999888753
No 162
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=96.02 E-value=0.0034 Score=51.85 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=21.1
Q ss_pred CCCCchHHHHHHHHHhcCCcEee
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFD 23 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d 23 (193)
+||+|||++|+.+++.++.+++.
T Consensus 156 ppGtGKT~la~aia~~~~~~~~~ 178 (389)
T 3vfd_A 156 PPGNGKTMLAKAVAAESNATFFN 178 (389)
T ss_dssp STTSCHHHHHHHHHHHTTCEEEE
T ss_pred CCCCCHHHHHHHHHHhhcCcEEE
Confidence 69999999999999999988775
No 163
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.94 E-value=0.0034 Score=50.12 Aligned_cols=28 Identities=21% Similarity=0.148 Sum_probs=22.3
Q ss_pred CCCCchHHHHHHHHHhcC-------CcEe-echHHH
Q 029455 1 MMGSGKTTVGKILSGVLG-------YSFF-DCDTLI 28 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg-------~~~~-d~d~~~ 28 (193)
++||||||+++.|++.++ ...+ +.|.++
T Consensus 39 ~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~ 74 (290)
T 1odf_A 39 PQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFY 74 (290)
T ss_dssp CTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGB
T ss_pred CCCCCHHHHHHHHHHHhhhcCCCCceEEEecccccc
Confidence 689999999999998875 3445 777754
No 164
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=95.83 E-value=0.0038 Score=49.99 Aligned_cols=25 Identities=32% Similarity=0.356 Sum_probs=21.6
Q ss_pred CCCCchHHHHHHHHHhcCCcEeech
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCD 25 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d 25 (193)
|||+||||+++.+++.++.+++..+
T Consensus 56 ~~G~GKT~la~~la~~l~~~~~~i~ 80 (324)
T 3u61_B 56 SPGTGKTTVAKALCHDVNADMMFVN 80 (324)
T ss_dssp STTSSHHHHHHHHHHHTTEEEEEEE
T ss_pred cCCCCHHHHHHHHHHHhCCCEEEEc
Confidence 5999999999999999998776543
No 165
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.80 E-value=0.004 Score=44.10 Aligned_cols=17 Identities=24% Similarity=0.274 Sum_probs=15.4
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
+||||||++|+.|++..
T Consensus 32 ~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 32 APGTGRMTGARYLHQFG 48 (145)
T ss_dssp STTSSHHHHHHHHHHSS
T ss_pred CCCCCHHHHHHHHHHhC
Confidence 69999999999999865
No 166
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=95.77 E-value=0.0031 Score=45.15 Aligned_cols=26 Identities=19% Similarity=0.346 Sum_probs=19.9
Q ss_pred CCCCchHHHHHHHHHhc---C--CcEeechH
Q 029455 1 MMGSGKTTVGKILSGVL---G--YSFFDCDT 26 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l---g--~~~~d~d~ 26 (193)
++||||||+++.++..+ | ..+++..+
T Consensus 44 ~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~ 74 (149)
T 2kjq_A 44 EEGAGKSHLLQAWVAQALEAGKNAAYIDAAS 74 (149)
T ss_dssp SSTTTTCHHHHHHHHHHHTTTCCEEEEETTT
T ss_pred CCCCCHHHHHHHHHHHHHhcCCcEEEEcHHH
Confidence 68999999999999877 6 34555443
No 167
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.72 E-value=0.0045 Score=49.03 Aligned_cols=17 Identities=47% Similarity=0.673 Sum_probs=16.0
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
|||+|||++++.+++.+
T Consensus 75 ~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 75 NPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 79999999999999988
No 168
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.71 E-value=0.0052 Score=49.25 Aligned_cols=28 Identities=25% Similarity=0.457 Sum_probs=22.0
Q ss_pred CCCCchHHHHHHHHHhc---CCc--EeechHHH
Q 029455 1 MMGSGKTTVGKILSGVL---GYS--FFDCDTLI 28 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l---g~~--~~d~d~~~ 28 (193)
|||+||||+++.++..+ +.+ ++++..+.
T Consensus 45 ~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~ 77 (324)
T 1l8q_A 45 SVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFA 77 (324)
T ss_dssp SSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHH
Confidence 69999999999999987 655 45555554
No 169
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=95.70 E-value=0.0054 Score=51.93 Aligned_cols=25 Identities=20% Similarity=0.259 Sum_probs=22.0
Q ss_pred CCCCchHHHHHHHHHhcCCcEeech
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCD 25 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d 25 (193)
|||+||||+++.|++.++.+++...
T Consensus 58 ppGtGKTtlAr~ia~~~~~~f~~l~ 82 (447)
T 3pvs_A 58 PPGTGKTTLAEVIARYANADVERIS 82 (447)
T ss_dssp STTSSHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCCcHHHHHHHHHHHhCCCeEEEE
Confidence 6999999999999999998876543
No 170
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=95.70 E-value=0.0054 Score=51.76 Aligned_cols=28 Identities=25% Similarity=0.457 Sum_probs=21.0
Q ss_pred CCCCchHHHHHHHHHhc-CCcEe--echHHH
Q 029455 1 MMGSGKTTVGKILSGVL-GYSFF--DCDTLI 28 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l-g~~~~--d~d~~~ 28 (193)
|||+|||++|+.||..+ +.+++ +...+.
T Consensus 175 ppGtGKT~lA~aia~~~~~~~~~~v~~~~l~ 205 (444)
T 2zan_A 175 PPGTGKSYLAKAVATEANNSTFFSISSSDLV 205 (444)
T ss_dssp STTSSHHHHHHHHHHHCCSSEEEEECCC---
T ss_pred CCCCCHHHHHHHHHHHcCCCCEEEEeHHHHH
Confidence 79999999999999998 76665 444544
No 171
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.68 E-value=0.0072 Score=44.86 Aligned_cols=30 Identities=23% Similarity=0.278 Sum_probs=22.5
Q ss_pred CCCCchHHHHHHHHHhc---CCc--EeechHHHHH
Q 029455 1 MMGSGKTTVGKILSGVL---GYS--FFDCDTLIEQ 30 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l---g~~--~~d~d~~~~~ 30 (193)
+||+||||+++.++..+ +.+ +++...+...
T Consensus 62 ~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~~ 96 (202)
T 2w58_A 62 SFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRE 96 (202)
T ss_dssp STTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHHH
Confidence 68999999999999877 443 4666665543
No 172
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=95.61 E-value=0.0056 Score=48.78 Aligned_cols=22 Identities=32% Similarity=0.460 Sum_probs=20.0
Q ss_pred CCCCchHHHHHHHHHhcCCcEe
Q 029455 1 MMGSGKTTVGKILSGVLGYSFF 22 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~ 22 (193)
+||+||||+++.+++.++.+++
T Consensus 46 ~~GtGKT~la~~i~~~~~~~~~ 67 (324)
T 1hqc_A 46 PPGLGKTTLAHVIAHELGVNLR 67 (324)
T ss_dssp CTTCCCHHHHHHHHHHHTCCEE
T ss_pred CCCCCHHHHHHHHHHHhCCCEE
Confidence 6999999999999999998765
No 173
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=95.60 E-value=0.0048 Score=49.56 Aligned_cols=22 Identities=23% Similarity=0.286 Sum_probs=19.9
Q ss_pred CCCCchHHHHHHHHHhcCCcEe
Q 029455 1 MMGSGKTTVGKILSGVLGYSFF 22 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~ 22 (193)
+||+|||++++.|++.++.+++
T Consensus 54 ~pGtGKT~la~~la~~~~~~~~ 75 (331)
T 2r44_A 54 VPGLAKTLSVNTLAKTMDLDFH 75 (331)
T ss_dssp CCCHHHHHHHHHHHHHTTCCEE
T ss_pred CCCCcHHHHHHHHHHHhCCCeE
Confidence 6999999999999999987764
No 174
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=95.52 E-value=0.0068 Score=52.05 Aligned_cols=24 Identities=25% Similarity=0.420 Sum_probs=20.8
Q ss_pred CCCCchHHHHHHHHHhcCCcEeec
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDC 24 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~ 24 (193)
||||||||+++.|+..++.+++..
T Consensus 72 ppGtGKTtLaraIa~~~~~~~i~i 95 (499)
T 2dhr_A 72 PPGVGKTHLARAVAGEARVPFITA 95 (499)
T ss_dssp SSSSSHHHHHHHHHHHTTCCEEEE
T ss_pred CCCCCHHHHHHHHHHHhCCCEEEE
Confidence 799999999999999988776543
No 175
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.46 E-value=0.0061 Score=45.54 Aligned_cols=17 Identities=35% Similarity=0.249 Sum_probs=15.2
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
|+||||||+.+.|...+
T Consensus 12 psGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 12 PSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHhhC
Confidence 78999999999998754
No 176
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=95.41 E-value=0.0076 Score=51.60 Aligned_cols=24 Identities=29% Similarity=0.423 Sum_probs=21.5
Q ss_pred CCCCchHHHHHHHHHhcCCcEeec
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDC 24 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~ 24 (193)
+||+|||++|+.++..++.+++..
T Consensus 246 ppGtGKT~lAraia~~~~~~fv~v 269 (489)
T 3hu3_A 246 PPGTGKTLIARAVANETGAFFFLI 269 (489)
T ss_dssp STTSSHHHHHHHHHHHCSSEEEEE
T ss_pred cCCCCHHHHHHHHHHHhCCCEEEE
Confidence 699999999999999999887753
No 177
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.38 E-value=0.0076 Score=45.39 Aligned_cols=18 Identities=17% Similarity=0.228 Sum_probs=16.3
Q ss_pred CCCCchHHHHHHHHHhcC
Q 029455 1 MMGSGKTTVGKILSGVLG 18 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg 18 (193)
|+||||||+.+.|.+.+.
T Consensus 27 PSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 27 ASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CTTSSHHHHHHHHHHHCT
T ss_pred cCCCCHHHHHHHHHhhCC
Confidence 799999999999998765
No 178
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=95.38 E-value=0.0075 Score=44.77 Aligned_cols=21 Identities=24% Similarity=0.202 Sum_probs=17.6
Q ss_pred CCCCchHHHHHHHHHhcCCcEe
Q 029455 1 MMGSGKTTVGKILSGVLGYSFF 22 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~ 22 (193)
++||||||+|..|+.. |.+++
T Consensus 7 g~~SGKS~~A~~la~~-~~~~~ 27 (180)
T 1c9k_A 7 GARSGKSRHAEALIGD-APQVL 27 (180)
T ss_dssp CTTSSHHHHHHHHHCS-CSSEE
T ss_pred CCCCcHHHHHHHHHhc-CCCeE
Confidence 5899999999999987 76543
No 179
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.32 E-value=0.0089 Score=54.17 Aligned_cols=25 Identities=24% Similarity=0.323 Sum_probs=23.0
Q ss_pred CCCCchHHHHHHHHHhcCCcEeech
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCD 25 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d 25 (193)
|||||||.+|+.+|.+++.+++..+
T Consensus 519 PPGtGKT~lAkaiA~e~~~~f~~v~ 543 (806)
T 3cf2_A 519 PPGCGKTLLAKAIANECQANFISIK 543 (806)
T ss_dssp STTSSHHHHHHHHHHTTTCEEEECC
T ss_pred CCCCCchHHHHHHHHHhCCceEEec
Confidence 7999999999999999999988654
No 180
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=95.31 E-value=0.0089 Score=49.48 Aligned_cols=23 Identities=30% Similarity=0.353 Sum_probs=20.4
Q ss_pred CCCCchHHHHHHHHHhcCCcEee
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFD 23 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d 23 (193)
||||||||+++.|+..++..++.
T Consensus 177 ~~GsGKSTl~~~l~~~~~g~~~~ 199 (377)
T 1svm_A 177 PIDSGKTTLAAALLELCGGKALN 199 (377)
T ss_dssp STTSSHHHHHHHHHHHHCCEEEC
T ss_pred CCCCCHHHHHHHHHhhcCCcEEE
Confidence 79999999999999988877665
No 181
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.29 E-value=0.0072 Score=45.60 Aligned_cols=28 Identities=11% Similarity=0.020 Sum_probs=21.3
Q ss_pred CCCCchHHHHHHHHHhcC-----CcEeechHHH
Q 029455 1 MMGSGKTTVGKILSGVLG-----YSFFDCDTLI 28 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg-----~~~~d~d~~~ 28 (193)
||||||||+++.+++.++ +.+++.+.+.
T Consensus 60 ~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~ 92 (242)
T 3bos_A 60 PVKSGRTHLIHAACARANELERRSFYIPLGIHA 92 (242)
T ss_dssp STTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGG
T ss_pred CCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHH
Confidence 699999999999998764 3456665543
No 182
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.28 E-value=0.0079 Score=45.10 Aligned_cols=18 Identities=28% Similarity=0.250 Sum_probs=16.0
Q ss_pred CCCCchHHHHHHHHHhcC
Q 029455 1 MMGSGKTTVGKILSGVLG 18 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg 18 (193)
|+||||||+.+.|+..+.
T Consensus 28 pnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 28 PSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp STTSSHHHHHHHHHHHST
T ss_pred CCCCCHHHHHHHHHhhCC
Confidence 689999999999998764
No 183
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.26 E-value=0.0078 Score=48.83 Aligned_cols=17 Identities=35% Similarity=0.653 Sum_probs=16.0
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
|||+||||+++.+++.+
T Consensus 52 ~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 52 LTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 79999999999999988
No 184
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.18 E-value=0.01 Score=48.18 Aligned_cols=19 Identities=32% Similarity=0.453 Sum_probs=17.7
Q ss_pred CCCCchHHHHHHHHHhcCC
Q 029455 1 MMGSGKTTVGKILSGVLGY 19 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~ 19 (193)
|||+|||++++.+++.++.
T Consensus 78 ppGtGKT~la~~la~~l~~ 96 (368)
T 3uk6_A 78 QPGTGKTAIAMGMAQALGP 96 (368)
T ss_dssp STTSSHHHHHHHHHHHHCS
T ss_pred CCCCCHHHHHHHHHHHhcc
Confidence 7999999999999999974
No 185
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.18 E-value=0.01 Score=48.29 Aligned_cols=25 Identities=24% Similarity=0.290 Sum_probs=20.7
Q ss_pred CCCCchHHHHHHHHHhc-----------CCcEeech
Q 029455 1 MMGSGKTTVGKILSGVL-----------GYSFFDCD 25 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l-----------g~~~~d~d 25 (193)
|||+||||+++.+++.+ +++++..+
T Consensus 53 ~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~ 88 (384)
T 2qby_B 53 LTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVN 88 (384)
T ss_dssp CTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEE
T ss_pred CCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEE
Confidence 69999999999999987 77666443
No 186
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=95.17 E-value=0.0097 Score=51.55 Aligned_cols=23 Identities=35% Similarity=0.520 Sum_probs=20.2
Q ss_pred CCCCchHHHHHHHHHhcCCcEee
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFD 23 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d 23 (193)
||||||||+++.|+..++.++..
T Consensus 116 p~GtGKTtlar~ia~~l~~~~~~ 138 (543)
T 3m6a_A 116 PPGVGKTSLAKSIAKSLGRKFVR 138 (543)
T ss_dssp SSSSSHHHHHHHHHHHHTCEEEE
T ss_pred CCCCCHHHHHHHHHHhcCCCeEE
Confidence 79999999999999999876653
No 187
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.16 E-value=0.0089 Score=45.37 Aligned_cols=17 Identities=35% Similarity=0.272 Sum_probs=15.5
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
|+||||||+.+.|+..+
T Consensus 31 psGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 31 PSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp STTSSHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHhhC
Confidence 68999999999999866
No 188
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.16 E-value=0.0035 Score=44.35 Aligned_cols=21 Identities=19% Similarity=0.107 Sum_probs=17.7
Q ss_pred CCCCchHHHHHHHHHhcCCcEe
Q 029455 1 MMGSGKTTVGKILSGVLGYSFF 22 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~ 22 (193)
+||+|||++|+.+++..+ +++
T Consensus 35 ~~GtGKt~lA~~i~~~~~-~~~ 55 (143)
T 3co5_A 35 EAGSPFETVARYFHKNGT-PWV 55 (143)
T ss_dssp ETTCCHHHHHGGGCCTTS-CEE
T ss_pred CCCccHHHHHHHHHHhCC-CeE
Confidence 589999999999998776 554
No 189
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.12 E-value=0.0086 Score=48.26 Aligned_cols=20 Identities=20% Similarity=0.391 Sum_probs=17.2
Q ss_pred CeEEEEECCHHHHHHHHhcc
Q 029455 87 GISVWLDVPLEALAQRIAAV 106 (193)
Q Consensus 87 ~~vV~L~~~~~~~~~Rl~~~ 106 (193)
+.+|||+++.+.+.+|+.+|
T Consensus 219 D~~I~V~a~~~~~~~R~i~R 238 (312)
T 3aez_A 219 DFSLYVDARIEDIEQWYVSR 238 (312)
T ss_dssp SEEEEEEECHHHHHHHHHHH
T ss_pred CcEEEEECCHHHHHHHHHHH
Confidence 68999999999988887754
No 190
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=95.12 E-value=0.0088 Score=47.34 Aligned_cols=17 Identities=41% Similarity=0.575 Sum_probs=16.0
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
||||||||+|+.|++.+
T Consensus 55 ~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 55 PTGVGKTELAKTLAATL 71 (311)
T ss_dssp CSSSSHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHH
Confidence 69999999999999987
No 191
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.07 E-value=0.011 Score=53.66 Aligned_cols=25 Identities=28% Similarity=0.436 Sum_probs=21.7
Q ss_pred CCCCchHHHHHHHHHhcCCcEeech
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCD 25 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d 25 (193)
+|||||||+++.|+..++.+++..+
T Consensus 246 p~GtGKTtLarala~~l~~~~i~v~ 270 (806)
T 1ypw_A 246 PPGTGKTLIARAVANETGAFFFLIN 270 (806)
T ss_dssp CTTSSHHHHHHHHHHTTTCEEEEEE
T ss_pred cCCCCHHHHHHHHHHHcCCcEEEEE
Confidence 6999999999999999998776544
No 192
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=95.04 E-value=0.011 Score=50.10 Aligned_cols=26 Identities=23% Similarity=0.282 Sum_probs=20.7
Q ss_pred CCCCchHHHHHHHHHhc----------CCcEeechH
Q 029455 1 MMGSGKTTVGKILSGVL----------GYSFFDCDT 26 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l----------g~~~~d~d~ 26 (193)
+||+|||++++.|++.+ +.+++..|.
T Consensus 209 ~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~ 244 (468)
T 3pxg_A 209 EPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM 244 (468)
T ss_dssp CTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC--
T ss_pred CCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeC
Confidence 69999999999999987 667766553
No 193
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.01 E-value=0.012 Score=47.58 Aligned_cols=24 Identities=29% Similarity=0.419 Sum_probs=19.9
Q ss_pred CCCCchHHHHHHHHHhc------CCcEeec
Q 029455 1 MMGSGKTTVGKILSGVL------GYSFFDC 24 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l------g~~~~d~ 24 (193)
|+|+||||+++.+++.+ ++.++..
T Consensus 53 ~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i 82 (386)
T 2qby_A 53 LTGTGKTAVVKFVLSKLHKKFLGKFKHVYI 82 (386)
T ss_dssp CTTSSHHHHHHHHHHHHHHHTCSSCEEEEE
T ss_pred CCCCCHHHHHHHHHHHHHHHhcCCceEEEE
Confidence 69999999999999987 7665543
No 194
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.97 E-value=0.012 Score=44.94 Aligned_cols=18 Identities=22% Similarity=0.230 Sum_probs=16.0
Q ss_pred CCCCchHHHHHHHHHhcC
Q 029455 1 MMGSGKTTVGKILSGVLG 18 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg 18 (193)
|+||||||+.+.|+..+.
T Consensus 24 psGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 24 PSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CTTSCHHHHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHhccCC
Confidence 789999999999998664
No 195
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=94.97 E-value=0.016 Score=42.85 Aligned_cols=26 Identities=19% Similarity=0.185 Sum_probs=21.5
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHH
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTL 27 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~ 27 (193)
+||+||||+|..|.+ .|+.++.=|..
T Consensus 24 ~SGaGKStlal~L~~-rG~~lvaDD~v 49 (181)
T 3tqf_A 24 EANIGKSELSLALID-RGHQLVCDDVI 49 (181)
T ss_dssp SSSSSHHHHHHHHHH-TTCEEEESSEE
T ss_pred CCCCCHHHHHHHHHH-cCCeEecCCEE
Confidence 589999999999987 58888765553
No 196
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=94.94 E-value=0.0093 Score=45.32 Aligned_cols=23 Identities=13% Similarity=0.163 Sum_probs=19.4
Q ss_pred CCCCchHHHHHHHHHhcCCcEee
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFD 23 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d 23 (193)
|||+||||+|..|++.++-.+++
T Consensus 66 PPGtGKTt~a~ala~~l~g~i~~ 88 (212)
T 1tue_A 66 PANTGKSYFGMSFIHFIQGAVIS 88 (212)
T ss_dssp CGGGCHHHHHHHHHHHHTCEECC
T ss_pred CCCCCHHHHHHHHHHHhCCCeee
Confidence 79999999999999988755543
No 197
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.84 E-value=0.012 Score=43.12 Aligned_cols=17 Identities=29% Similarity=0.180 Sum_probs=15.0
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
++||||||++..|+..|
T Consensus 12 ~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 12 YKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhh
Confidence 58999999999998765
No 198
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=94.78 E-value=0.012 Score=44.31 Aligned_cols=16 Identities=38% Similarity=0.551 Sum_probs=14.3
Q ss_pred CCCCchHHHHHHHHHh
Q 029455 1 MMGSGKTTVGKILSGV 16 (193)
Q Consensus 1 ~~GsGKSTia~~La~~ 16 (193)
|+||||||+++.|+..
T Consensus 33 ~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 33 EFGSGKTQLAHTLAVM 48 (231)
T ss_dssp STTSSHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH
Confidence 6899999999999863
No 199
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=94.77 E-value=0.012 Score=53.46 Aligned_cols=23 Identities=26% Similarity=0.359 Sum_probs=20.5
Q ss_pred CCCCchHHHHHHHHHhcCCcEee
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFD 23 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d 23 (193)
||||||||+++.||..++.+++.
T Consensus 519 ppGtGKT~Lakala~~~~~~~i~ 541 (806)
T 1ypw_A 519 PPGCGKTLLAKAIANECQANFIS 541 (806)
T ss_dssp CTTSSHHHHHHHHHHHHTCCCCC
T ss_pred CCCCCHHHHHHHHHHHhCCCEEE
Confidence 79999999999999999877654
No 200
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=94.72 E-value=0.013 Score=43.29 Aligned_cols=17 Identities=35% Similarity=0.374 Sum_probs=15.6
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
+||+||||+++.+++.+
T Consensus 46 ~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 46 PPGTGKTATAIALARDL 62 (226)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 68999999999999876
No 201
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=94.71 E-value=0.013 Score=43.80 Aligned_cols=19 Identities=32% Similarity=0.541 Sum_probs=17.0
Q ss_pred CCCCchHHHHHHHHHhcCC
Q 029455 1 MMGSGKTTVGKILSGVLGY 19 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~ 19 (193)
+||+||||+++.+++.++.
T Consensus 53 ~~G~GKT~l~~~~~~~~~~ 71 (250)
T 1njg_A 53 TRGVGKTSIARLLAKGLNC 71 (250)
T ss_dssp STTSCHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHhcC
Confidence 6899999999999998764
No 202
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=94.67 E-value=0.017 Score=46.93 Aligned_cols=23 Identities=26% Similarity=0.219 Sum_probs=19.1
Q ss_pred CCCCchHHHHHHHHHhc----CCcEee
Q 029455 1 MMGSGKTTVGKILSGVL----GYSFFD 23 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l----g~~~~d 23 (193)
|||+||||+++.+++.+ ++.++.
T Consensus 52 ~~G~GKTtl~~~l~~~~~~~~~~~~~~ 78 (389)
T 1fnn_A 52 RPGTGKTVTLRKLWELYKDKTTARFVY 78 (389)
T ss_dssp CTTSSHHHHHHHHHHHHTTSCCCEEEE
T ss_pred CCCCCHHHHHHHHHHHHhhhcCeeEEE
Confidence 69999999999999988 555543
No 203
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=94.66 E-value=0.013 Score=44.59 Aligned_cols=14 Identities=36% Similarity=0.413 Sum_probs=13.1
Q ss_pred CCCCchHHHHHHHH
Q 029455 1 MMGSGKTTVGKILS 14 (193)
Q Consensus 1 ~~GsGKSTia~~La 14 (193)
|+||||||+++.|+
T Consensus 38 pnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 38 GTGTGKTTFAAQFI 51 (251)
T ss_dssp CTTSSHHHHHHHHH
T ss_pred CCCCCHHHHHHHHH
Confidence 68999999999887
No 204
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.56 E-value=0.017 Score=41.82 Aligned_cols=17 Identities=29% Similarity=0.401 Sum_probs=15.5
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
+.||||||+.+.|+..+
T Consensus 41 ~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 41 DLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp STTSSHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHhC
Confidence 58999999999999876
No 205
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=94.54 E-value=0.02 Score=44.33 Aligned_cols=18 Identities=22% Similarity=0.261 Sum_probs=16.2
Q ss_pred CCCCchHHHHHHHHHhcC
Q 029455 1 MMGSGKTTVGKILSGVLG 18 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg 18 (193)
+||+|||++|+.+++.++
T Consensus 37 ~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 37 ERGTGKELIASRLHYLSS 54 (265)
T ss_dssp CTTSCHHHHHHHHHHTST
T ss_pred CCCCcHHHHHHHHHHhcC
Confidence 689999999999998764
No 206
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=94.41 E-value=0.02 Score=48.26 Aligned_cols=28 Identities=14% Similarity=0.355 Sum_probs=21.7
Q ss_pred CCCCchHHHHHHHHHhc-----CCc--EeechHHH
Q 029455 1 MMGSGKTTVGKILSGVL-----GYS--FFDCDTLI 28 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l-----g~~--~~d~d~~~ 28 (193)
|||+||||+++.++..+ +.+ ++++..+.
T Consensus 138 p~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~ 172 (440)
T 2z4s_A 138 GVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFL 172 (440)
T ss_dssp SSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHH
Confidence 69999999999999877 554 45655554
No 207
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=94.40 E-value=0.019 Score=51.49 Aligned_cols=26 Identities=23% Similarity=0.282 Sum_probs=21.3
Q ss_pred CCCCchHHHHHHHHHhc----------CCcEeechH
Q 029455 1 MMGSGKTTVGKILSGVL----------GYSFFDCDT 26 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l----------g~~~~d~d~ 26 (193)
+||+|||++++.||+.+ +.+++..+.
T Consensus 209 ~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~ 244 (758)
T 3pxi_A 209 EPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM 244 (758)
T ss_dssp CTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC--
T ss_pred CCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc
Confidence 69999999999999997 777776655
No 208
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.32 E-value=0.017 Score=46.61 Aligned_cols=18 Identities=28% Similarity=0.207 Sum_probs=16.3
Q ss_pred CCCCchHHHHHHHHHhcC
Q 029455 1 MMGSGKTTVGKILSGVLG 18 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg 18 (193)
|||+||||+++.|++.+.
T Consensus 54 p~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 54 PPGTGKTSTIVALAREIY 71 (340)
T ss_dssp SSSSSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHc
Confidence 799999999999999863
No 209
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=94.28 E-value=0.022 Score=45.47 Aligned_cols=26 Identities=15% Similarity=0.239 Sum_probs=22.3
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechH
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDT 26 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~ 26 (193)
++|+||||+++.+++.+++.+++...
T Consensus 39 ~~G~GKT~Ll~~~~~~~~~~~~~~~~ 64 (350)
T 2qen_A 39 IRRVGKSSLLRAFLNERPGILIDCRE 64 (350)
T ss_dssp CTTSSHHHHHHHHHHHSSEEEEEHHH
T ss_pred CCcCCHHHHHHHHHHHcCcEEEEeec
Confidence 68999999999999998877777654
No 210
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=94.22 E-value=0.02 Score=42.58 Aligned_cols=17 Identities=47% Similarity=0.374 Sum_probs=15.4
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
++||||||+.+.|+..+
T Consensus 9 ~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 9 PPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCSSCHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHhhc
Confidence 68999999999999876
No 211
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=94.21 E-value=0.02 Score=42.95 Aligned_cols=16 Identities=25% Similarity=0.223 Sum_probs=14.1
Q ss_pred CCCCchHHHHHHHHHh
Q 029455 1 MMGSGKTTVGKILSGV 16 (193)
Q Consensus 1 ~~GsGKSTia~~La~~ 16 (193)
++||||||+++.|+..
T Consensus 31 ~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 31 EPGTGKTIFSLHFIAK 46 (235)
T ss_dssp STTSSHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH
Confidence 6899999999999854
No 212
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=94.19 E-value=0.011 Score=43.49 Aligned_cols=17 Identities=35% Similarity=0.335 Sum_probs=14.9
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
++||||||+++.|...+
T Consensus 10 ~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 10 TSDSGKTTLITRMMPIL 26 (171)
T ss_dssp SCHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 58999999999998765
No 213
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=94.17 E-value=0.019 Score=46.94 Aligned_cols=20 Identities=25% Similarity=0.278 Sum_probs=17.2
Q ss_pred CCCCchHHHHHHHHHhcCCc
Q 029455 1 MMGSGKTTVGKILSGVLGYS 20 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~ 20 (193)
++||||||+++.|+..+...
T Consensus 178 ~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 178 GESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp CTTSHHHHHHHHHHHHTTCE
T ss_pred CCCCCHHHHHHHHHHHhCCC
Confidence 58999999999999877643
No 214
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.15 E-value=0.022 Score=41.89 Aligned_cols=17 Identities=47% Similarity=0.466 Sum_probs=14.7
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
++||||||+.+.|...+
T Consensus 14 ~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 14 WSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CTTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhc
Confidence 58999999999998754
No 215
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=94.09 E-value=0.021 Score=42.61 Aligned_cols=26 Identities=27% Similarity=0.325 Sum_probs=18.8
Q ss_pred CCCCchHHHHHHHHHhcC--CcEeechH
Q 029455 1 MMGSGKTTVGKILSGVLG--YSFFDCDT 26 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg--~~~~d~d~ 26 (193)
+|||||||++..|+...+ ..+++.+.
T Consensus 28 ~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 28 PYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp STTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred CCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 689999999999986434 34555443
No 216
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=94.07 E-value=0.017 Score=44.48 Aligned_cols=16 Identities=38% Similarity=0.497 Sum_probs=14.0
Q ss_pred CCCCchHHHHHHHHHh
Q 029455 1 MMGSGKTTVGKILSGV 16 (193)
Q Consensus 1 ~~GsGKSTia~~La~~ 16 (193)
|+||||||+.+.|+--
T Consensus 39 ~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 39 PSGSGKSTMLNIIGCL 54 (235)
T ss_dssp STTSSHHHHHHHHTTS
T ss_pred CCCCcHHHHHHHHhcC
Confidence 6899999999999743
No 217
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=94.04 E-value=0.026 Score=45.26 Aligned_cols=32 Identities=19% Similarity=0.199 Sum_probs=23.4
Q ss_pred CCCCchHHHHHHHHHhcC----Cc--EeechHHHHHHh
Q 029455 1 MMGSGKTTVGKILSGVLG----YS--FFDCDTLIEQSV 32 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg----~~--~~d~d~~~~~~~ 32 (193)
+||+|||+++..++..+. .+ +++...++....
T Consensus 160 ~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~l~ 197 (308)
T 2qgz_A 160 DMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDVK 197 (308)
T ss_dssp STTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHHHH
Confidence 699999999999987543 44 467776665443
No 218
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=94.04 E-value=0.025 Score=50.67 Aligned_cols=27 Identities=37% Similarity=0.458 Sum_probs=22.1
Q ss_pred CCCCchHHHHHHHHHhcCCcEe--echHH
Q 029455 1 MMGSGKTTVGKILSGVLGYSFF--DCDTL 27 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~--d~d~~ 27 (193)
|||+|||++|+.|++.++.+++ ++..+
T Consensus 496 ~~GtGKT~la~~la~~l~~~~~~i~~s~~ 524 (758)
T 1r6b_X 496 PTGVGKTEVTVQLSKALGIELLRFDMSEY 524 (758)
T ss_dssp STTSSHHHHHHHHHHHHTCEEEEEEGGGC
T ss_pred CCCCcHHHHHHHHHHHhcCCEEEEechhh
Confidence 6999999999999999997665 44443
No 219
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=94.04 E-value=0.018 Score=44.01 Aligned_cols=16 Identities=44% Similarity=0.451 Sum_probs=14.0
Q ss_pred CCCCchHHHHHHHHHh
Q 029455 1 MMGSGKTTVGKILSGV 16 (193)
Q Consensus 1 ~~GsGKSTia~~La~~ 16 (193)
|+||||||+.+.|+--
T Consensus 38 ~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 38 ASGSGKSTLLYILGLL 53 (224)
T ss_dssp CTTSCHHHHHHHHTTS
T ss_pred CCCCCHHHHHHHHhcC
Confidence 6899999999999753
No 220
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.02 E-value=0.017 Score=46.33 Aligned_cols=18 Identities=33% Similarity=0.228 Sum_probs=16.4
Q ss_pred CCCCchHHHHHHHHHhcC
Q 029455 1 MMGSGKTTVGKILSGVLG 18 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg 18 (193)
|||+||||+++.+++.++
T Consensus 66 ~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 66 PPGTGKTSTILALTKELY 83 (353)
T ss_dssp STTSSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 699999999999999864
No 221
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=94.01 E-value=0.022 Score=44.03 Aligned_cols=17 Identities=24% Similarity=0.610 Sum_probs=14.7
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
|+||||||+.+.|+--+
T Consensus 32 ~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 32 PTGAGKSVFLELIAGIV 48 (240)
T ss_dssp CTTSSHHHHHHHHHTSS
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 68999999999998644
No 222
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=93.99 E-value=0.016 Score=46.54 Aligned_cols=18 Identities=33% Similarity=0.477 Sum_probs=16.8
Q ss_pred CCCCchHHHHHHHHHhcC
Q 029455 1 MMGSGKTTVGKILSGVLG 18 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg 18 (193)
+||+|||++++.+++.++
T Consensus 53 ~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 53 DRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CGGGCTTHHHHHHHHHSC
T ss_pred CCCccHHHHHHHHHHhCc
Confidence 689999999999999886
No 223
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=93.90 E-value=0.021 Score=43.20 Aligned_cols=15 Identities=33% Similarity=0.266 Sum_probs=13.7
Q ss_pred CCCCchHHHHHHHHH
Q 029455 1 MMGSGKTTVGKILSG 15 (193)
Q Consensus 1 ~~GsGKSTia~~La~ 15 (193)
|+||||||+.+.|+-
T Consensus 30 ~nGsGKSTLl~~l~G 44 (208)
T 3b85_A 30 PAGSGKTYLAMAKAV 44 (208)
T ss_dssp CTTSSTTHHHHHHHH
T ss_pred CCCCCHHHHHHHHhc
Confidence 689999999999985
No 224
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=93.88 E-value=0.018 Score=46.50 Aligned_cols=17 Identities=18% Similarity=-0.064 Sum_probs=16.2
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
|||+|||++++.+++++
T Consensus 53 pPGTGKT~~v~~v~~~L 69 (318)
T 3te6_A 53 ADDSTKFQLVNDVMDEL 69 (318)
T ss_dssp CCSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 79999999999999988
No 225
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*
Probab=93.85 E-value=0.022 Score=46.37 Aligned_cols=43 Identities=14% Similarity=0.031 Sum_probs=28.9
Q ss_pred CeEEEEECCHHHHHHHHhccCCCCCCccccCCCCChhHHHHHHHHHHHHHHH
Q 029455 87 GISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERG 138 (193)
Q Consensus 87 ~~vV~L~~~~~~~~~Rl~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~r~ 138 (193)
+++|||++|+++.++|+.+|+ |+... + .. +.++++++.|.+..
T Consensus 159 DLtIyLd~~pe~~l~RI~~Rg---R~~Er-i--~~---eyl~~vr~~Y~~l~ 201 (334)
T 1p6x_A 159 GNIVVTTLNVEEHIRRLRTRA---RIGEQ-I--DI---TLIATLRNVYFMLV 201 (334)
T ss_dssp EEEEEEECCHHHHHHHHHHHS---CTTCC-C--CH---HHHHHHHHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHhcC---CCccc-C--CH---HHHHHHHHHHHHHH
Confidence 789999999999999998753 43222 1 11 23666666666544
No 226
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=93.78 E-value=0.25 Score=42.35 Aligned_cols=20 Identities=20% Similarity=0.579 Sum_probs=15.5
Q ss_pred eEEEEECCHHHHHHHHhccC
Q 029455 88 ISVWLDVPLEALAQRIAAVG 107 (193)
Q Consensus 88 ~vV~L~~~~~~~~~Rl~~~~ 107 (193)
+++||+.|+++..+|+..+.
T Consensus 150 ~KffL~is~eeq~kRl~~R~ 169 (500)
T 3czp_A 150 FKFWFHLSKKQLKERLKALE 169 (500)
T ss_dssp EEEEEECCHHHHHHCC----
T ss_pred EEEEEECCHHHHHHHHHHHh
Confidence 78999999999999999753
No 227
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=93.74 E-value=0.029 Score=45.33 Aligned_cols=19 Identities=32% Similarity=0.541 Sum_probs=17.4
Q ss_pred CCCCchHHHHHHHHHhcCC
Q 029455 1 MMGSGKTTVGKILSGVLGY 19 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~ 19 (193)
++|+||||+++.+++.++.
T Consensus 46 ~~G~GKT~la~~la~~l~~ 64 (373)
T 1jr3_A 46 TRGVGKTSIARLLAKGLNC 64 (373)
T ss_dssp CTTSSHHHHHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHHHHhCC
Confidence 6899999999999998865
No 228
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=93.70 E-value=0.027 Score=45.24 Aligned_cols=17 Identities=24% Similarity=0.227 Sum_probs=15.4
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
|+||||||+++.|+.-+
T Consensus 134 psGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 134 PPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp SSSSSHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHhhhc
Confidence 68999999999999765
No 229
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=93.66 E-value=0.028 Score=42.56 Aligned_cols=15 Identities=27% Similarity=0.342 Sum_probs=14.1
Q ss_pred CCCCchHHHHHHHHH
Q 029455 1 MMGSGKTTVGKILSG 15 (193)
Q Consensus 1 ~~GsGKSTia~~La~ 15 (193)
+|||||||+++.|+.
T Consensus 32 ~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 32 EFRTGKTQICHTLAV 46 (243)
T ss_dssp CTTSSHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHH
Confidence 699999999999987
No 230
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=93.62 E-value=0.023 Score=44.62 Aligned_cols=17 Identities=41% Similarity=0.683 Sum_probs=14.4
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
|+||||||+.+.|+--+
T Consensus 45 ~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 45 PNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp CTTSCHHHHHHHHTSSS
T ss_pred CCCCcHHHHHHHHhcCC
Confidence 68999999999997533
No 231
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=93.59 E-value=0.03 Score=43.86 Aligned_cols=17 Identities=29% Similarity=0.309 Sum_probs=14.8
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
|+||||||+.+.|+..+
T Consensus 33 p~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 33 PTGSGKSTTIASMIDYI 49 (261)
T ss_dssp STTCSHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHhC
Confidence 68999999999998754
No 232
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.58 E-value=0.024 Score=45.68 Aligned_cols=17 Identities=29% Similarity=0.249 Sum_probs=15.4
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
|+|+||||+++.|+..+
T Consensus 44 p~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 44 PNGTGKKTRCMALLESI 60 (354)
T ss_dssp STTSSHHHHHHTHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 68999999999999864
No 233
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=93.54 E-value=0.024 Score=44.77 Aligned_cols=17 Identities=35% Similarity=0.503 Sum_probs=14.5
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
|+||||||+.+.|+--+
T Consensus 42 pnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 42 GNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp CTTSSHHHHHHHHTTSS
T ss_pred CCCCCHHHHHHHHHcCC
Confidence 68999999999997543
No 234
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=93.52 E-value=0.024 Score=43.64 Aligned_cols=16 Identities=25% Similarity=0.362 Sum_probs=14.0
Q ss_pred CCCCchHHHHHHHHHh
Q 029455 1 MMGSGKTTVGKILSGV 16 (193)
Q Consensus 1 ~~GsGKSTia~~La~~ 16 (193)
++||||||+.+.|+..
T Consensus 39 ~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 39 QVGCGKSSLLSALLAE 54 (237)
T ss_dssp STTSSHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHHhcC
Confidence 6899999999999754
No 235
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=93.48 E-value=0.031 Score=43.40 Aligned_cols=15 Identities=60% Similarity=0.981 Sum_probs=13.7
Q ss_pred CCCCchHHHHHHHHH
Q 029455 1 MMGSGKTTVGKILSG 15 (193)
Q Consensus 1 ~~GsGKSTia~~La~ 15 (193)
++||||||+.+.|+-
T Consensus 37 ~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 37 PNGAGKSTLGKILAG 51 (250)
T ss_dssp STTSSHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHhC
Confidence 689999999999985
No 236
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=93.44 E-value=0.026 Score=44.18 Aligned_cols=17 Identities=29% Similarity=0.288 Sum_probs=14.6
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
|+||||||+.+.|+--+
T Consensus 40 ~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 40 SSGSGKSTFLRCINFLE 56 (262)
T ss_dssp CTTSSHHHHHHHHTTSS
T ss_pred CCCCCHHHHHHHHhcCC
Confidence 68999999999997544
No 237
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=93.38 E-value=0.032 Score=45.88 Aligned_cols=17 Identities=41% Similarity=0.538 Sum_probs=14.8
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
|+||||||+.+.|+--+
T Consensus 38 psGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 38 ASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp STTSSHHHHHHHHHTSS
T ss_pred CCCchHHHHHHHHhcCC
Confidence 68999999999998643
No 238
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=93.37 E-value=0.028 Score=42.74 Aligned_cols=17 Identities=47% Similarity=0.428 Sum_probs=14.3
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
|+||||||+.+.|+-.+
T Consensus 43 ~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 43 PNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CTTSSHHHHHHHHTTSS
T ss_pred CCCCCHHHHHHHHhcCC
Confidence 68999999999997543
No 239
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.36 E-value=0.027 Score=43.46 Aligned_cols=17 Identities=35% Similarity=0.562 Sum_probs=14.5
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
|+||||||+.+.|+-.+
T Consensus 40 ~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 40 ANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp STTSSHHHHHHHHTTSS
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 68999999999997543
No 240
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=93.33 E-value=0.027 Score=43.89 Aligned_cols=17 Identities=41% Similarity=0.671 Sum_probs=14.4
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
|+||||||+.+.|+--+
T Consensus 41 ~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 41 PNGSGKSTLINVITGFL 57 (257)
T ss_dssp STTSSHHHHHHHHTTSS
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 68999999999997543
No 241
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=93.32 E-value=0.028 Score=43.41 Aligned_cols=17 Identities=29% Similarity=0.415 Sum_probs=14.6
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
++||||||+.+.|+--+
T Consensus 36 ~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 36 PSGGGKSTIFSLLERFY 52 (243)
T ss_dssp CTTSSHHHHHHHHTTSS
T ss_pred CCCCCHHHHHHHHhcCC
Confidence 68999999999997643
No 242
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=93.31 E-value=0.042 Score=50.08 Aligned_cols=17 Identities=29% Similarity=0.305 Sum_probs=16.1
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
+||+||||+++.|++.+
T Consensus 199 ~pG~GKT~la~~la~~l 215 (854)
T 1qvr_A 199 EPGVGKTAIVEGLAQRI 215 (854)
T ss_dssp CTTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 69999999999999987
No 243
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=93.30 E-value=0.035 Score=44.49 Aligned_cols=17 Identities=35% Similarity=0.298 Sum_probs=15.0
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
|+||||||+++.|+..+
T Consensus 110 ~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 110 VNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHH
Confidence 68999999999999655
No 244
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=93.26 E-value=0.028 Score=43.56 Aligned_cols=17 Identities=35% Similarity=0.556 Sum_probs=14.4
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
++||||||+.+.|+.-+
T Consensus 43 ~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 43 RSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp STTSSHHHHHHHHTTSS
T ss_pred CCCCCHHHHHHHHhcCC
Confidence 68999999999997543
No 245
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=93.23 E-value=1.7 Score=37.17 Aligned_cols=20 Identities=15% Similarity=0.430 Sum_probs=18.0
Q ss_pred eEEEEECCHHHHHHHHhccC
Q 029455 88 ISVWLDVPLEALAQRIAAVG 107 (193)
Q Consensus 88 ~vV~L~~~~~~~~~Rl~~~~ 107 (193)
+++||..|+++..+|+..|.
T Consensus 407 ~Kf~L~is~eeQ~~R~~~R~ 426 (500)
T 3czp_A 407 VKFWLAIDKQTQMERFKERE 426 (500)
T ss_dssp EEEEEECCHHHHHHHHHHHH
T ss_pred EEEEEECCHHHHHHHHHHHh
Confidence 68999999999999999853
No 246
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=93.21 E-value=0.03 Score=43.94 Aligned_cols=17 Identities=35% Similarity=0.307 Sum_probs=14.6
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
|+||||||+.+.|+-.+
T Consensus 58 ~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 58 PSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp CTTSSHHHHHHHHTTSS
T ss_pred CCCCcHHHHHHHHHcCC
Confidence 68999999999997544
No 247
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=93.20 E-value=0.038 Score=43.71 Aligned_cols=18 Identities=39% Similarity=0.266 Sum_probs=16.3
Q ss_pred CCCCchHHHHHHHHHhcC
Q 029455 1 MMGSGKTTVGKILSGVLG 18 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg 18 (193)
|||+||||+++.+++.++
T Consensus 54 ~~G~GKT~la~~l~~~l~ 71 (327)
T 1iqp_A 54 PPGVGKTTAALALARELF 71 (327)
T ss_dssp CTTSSHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHhc
Confidence 699999999999999863
No 248
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=93.17 E-value=0.037 Score=43.40 Aligned_cols=16 Identities=44% Similarity=0.603 Sum_probs=14.1
Q ss_pred CCCCchHHHHHHHHHh
Q 029455 1 MMGSGKTTVGKILSGV 16 (193)
Q Consensus 1 ~~GsGKSTia~~La~~ 16 (193)
++||||||+.+.|+-.
T Consensus 54 ~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 54 PNGSGKSTLSATLAGR 69 (267)
T ss_dssp CTTSSHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHhCC
Confidence 6899999999999853
No 249
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=93.16 E-value=0.036 Score=45.88 Aligned_cols=17 Identities=29% Similarity=0.565 Sum_probs=14.8
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
|+||||||+.+.|+--+
T Consensus 37 psGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 37 PSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp CTTSSHHHHHHHHHTSS
T ss_pred CCCchHHHHHHHHHcCC
Confidence 68999999999998644
No 250
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...
Probab=93.14 E-value=0.027 Score=45.73 Aligned_cols=20 Identities=20% Similarity=0.114 Sum_probs=16.9
Q ss_pred CeEEEEECCHHHHHHHHhcc
Q 029455 87 GISVWLDVPLEALAQRIAAV 106 (193)
Q Consensus 87 ~~vV~L~~~~~~~~~Rl~~~ 106 (193)
++++++++|+++.++|+.+|
T Consensus 156 dlt~lldl~pe~~l~RI~~R 175 (331)
T 1e2k_A 156 TNIVLGALPEDRHIDRLAKR 175 (331)
T ss_dssp CEEEEEECCHHHHHHHHHHS
T ss_pred eEEEEEcCCHHHHHHHHHhc
Confidence 46777788999999999875
No 251
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=93.12 E-value=0.032 Score=42.74 Aligned_cols=17 Identities=35% Similarity=0.552 Sum_probs=14.6
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
|+||||||+.+.|+-.+
T Consensus 42 ~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 42 STGAGKTSLLMMIMGEL 58 (229)
T ss_dssp CTTSSHHHHHHHHTTSS
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 68999999999997644
No 252
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=93.06 E-value=0.038 Score=45.34 Aligned_cols=17 Identities=41% Similarity=0.657 Sum_probs=14.7
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
|+||||||+.+.|+--+
T Consensus 49 pnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 49 PSGSGKTTILRLIAGLE 65 (355)
T ss_dssp STTSSHHHHHHHHHTSS
T ss_pred CCCCcHHHHHHHHhCCC
Confidence 68999999999998543
No 253
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.06 E-value=0.032 Score=43.54 Aligned_cols=17 Identities=41% Similarity=0.563 Sum_probs=14.6
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
|+||||||+.+.|+-.+
T Consensus 49 ~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 49 PNGAGKTTTLRIISTLI 65 (256)
T ss_dssp CTTSSHHHHHHHHTTSS
T ss_pred CCCCCHHHHHHHHhcCC
Confidence 68999999999997543
No 254
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=93.02 E-value=0.039 Score=43.50 Aligned_cols=17 Identities=24% Similarity=0.093 Sum_probs=14.6
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
+|||||||+++.|+..+
T Consensus 43 ~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 43 GSGMGKSTFVRQQALQW 59 (296)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 69999999999987644
No 255
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=93.00 E-value=0.039 Score=45.33 Aligned_cols=17 Identities=41% Similarity=0.559 Sum_probs=14.7
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
|+||||||+.+.|+--+
T Consensus 37 pnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 37 PSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp STTSSHHHHHHHHHTSS
T ss_pred CCCchHHHHHHHHHCCC
Confidence 68999999999998643
No 256
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=92.98 E-value=0.033 Score=43.83 Aligned_cols=17 Identities=41% Similarity=0.602 Sum_probs=14.6
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
++||||||+.+.|+-.+
T Consensus 53 ~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 53 PNGSGKSTVAALLQNLY 69 (271)
T ss_dssp STTSSHHHHHHHHTTSS
T ss_pred CCCCCHHHHHHHHhcCC
Confidence 68999999999997644
No 257
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=92.95 E-value=0.034 Score=43.21 Aligned_cols=17 Identities=29% Similarity=0.438 Sum_probs=14.4
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
|+||||||+.+.|+-.+
T Consensus 34 ~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 34 PNGAGKSTLLARMAGMT 50 (249)
T ss_dssp CTTSSHHHHHHHHTTSS
T ss_pred CCCCcHHHHHHHHhCCC
Confidence 68999999999997543
No 258
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=92.95 E-value=0.041 Score=45.25 Aligned_cols=17 Identities=35% Similarity=0.532 Sum_probs=14.8
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
|+||||||+.+.|+--+
T Consensus 37 pnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 37 PSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp CTTSSHHHHHHHHHTSS
T ss_pred CCCchHHHHHHHHhcCC
Confidence 68999999999998643
No 259
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=92.91 E-value=0.045 Score=41.44 Aligned_cols=16 Identities=25% Similarity=0.162 Sum_probs=13.5
Q ss_pred CCCCchHHHHHHHHHh
Q 029455 1 MMGSGKTTVGKILSGV 16 (193)
Q Consensus 1 ~~GsGKSTia~~La~~ 16 (193)
+|||||||++..++..
T Consensus 31 ~~GsGKTtl~~~~~~~ 46 (247)
T 2dr3_A 31 GPGTGKTIFSQQFLWN 46 (247)
T ss_dssp CTTSSHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH
Confidence 6999999998888653
No 260
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=92.91 E-value=0.034 Score=43.43 Aligned_cols=17 Identities=41% Similarity=0.618 Sum_probs=14.5
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
++||||||+.+.|+-.+
T Consensus 54 ~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 54 HTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp STTSSHHHHHHHHTTSS
T ss_pred CCCCCHHHHHHHHhccC
Confidence 68999999999997543
No 261
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=92.89 E-value=0.044 Score=43.81 Aligned_cols=17 Identities=41% Similarity=0.360 Sum_probs=15.1
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
++||||||+++.|+..+
T Consensus 108 ~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 108 VNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp CTTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 68999999999998765
No 262
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=92.89 E-value=0.042 Score=45.34 Aligned_cols=17 Identities=35% Similarity=0.550 Sum_probs=14.7
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
|+||||||+.+.|+--+
T Consensus 45 pnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 45 PSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp CTTSSHHHHHHHHHTSS
T ss_pred CCCChHHHHHHHHHcCC
Confidence 68999999999998543
No 263
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=92.86 E-value=0.047 Score=40.29 Aligned_cols=17 Identities=35% Similarity=0.159 Sum_probs=13.5
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
+|||||||++..++.++
T Consensus 11 ~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 11 PMYSGKTTELLSFVEIY 27 (184)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 58999999996666544
No 264
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=92.85 E-value=0.046 Score=43.87 Aligned_cols=26 Identities=35% Similarity=0.454 Sum_probs=19.2
Q ss_pred CCCCchHHHHHHHHHhc---C--CcEeechH
Q 029455 1 MMGSGKTTVGKILSGVL---G--YSFFDCDT 26 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l---g--~~~~d~d~ 26 (193)
++||||||++..||..+ | ..+++.|.
T Consensus 112 ~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~ 142 (306)
T 1vma_A 112 VNGTGKTTSCGKLAKMFVDEGKSVVLAAADT 142 (306)
T ss_dssp CTTSSHHHHHHHHHHHHHHTTCCEEEEEECT
T ss_pred CCCChHHHHHHHHHHHHHhcCCEEEEEcccc
Confidence 58999999999998765 3 23456554
No 265
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=92.83 E-value=0.036 Score=43.82 Aligned_cols=17 Identities=41% Similarity=0.526 Sum_probs=14.5
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
|+||||||+.+.|+-.+
T Consensus 55 ~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 55 LNGAGKTTLLNILNAYE 71 (279)
T ss_dssp CTTSSHHHHHHHHTTSS
T ss_pred CCCCcHHHHHHHHhCCC
Confidence 68999999999997543
No 266
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=92.83 E-value=0.043 Score=45.30 Aligned_cols=17 Identities=35% Similarity=0.550 Sum_probs=14.7
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
|+||||||+.+.|+--+
T Consensus 37 pnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 37 PSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp STTSSHHHHHHHHHTSS
T ss_pred CCCcHHHHHHHHHHcCC
Confidence 68999999999998543
No 267
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=92.78 E-value=0.036 Score=43.41 Aligned_cols=17 Identities=41% Similarity=0.722 Sum_probs=14.4
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
++||||||+.+.|+--+
T Consensus 41 ~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 41 NTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp STTSSHHHHHHHHTTSS
T ss_pred CCCCcHHHHHHHHhCCC
Confidence 68999999999997543
No 268
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=92.78 E-value=0.049 Score=44.57 Aligned_cols=17 Identities=35% Similarity=0.440 Sum_probs=15.5
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
+||+||||+++.+++.+
T Consensus 60 ~~G~GKT~L~~~~~~~~ 76 (412)
T 1w5s_A 60 RVGIGKTTLAKFTVKRV 76 (412)
T ss_dssp CCSSSHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHH
Confidence 69999999999998876
No 269
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=92.76 E-value=0.045 Score=42.84 Aligned_cols=15 Identities=27% Similarity=0.366 Sum_probs=13.5
Q ss_pred CCCCchHHHHHHHHH
Q 029455 1 MMGSGKTTVGKILSG 15 (193)
Q Consensus 1 ~~GsGKSTia~~La~ 15 (193)
++||||||++..|+.
T Consensus 38 ~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 38 PGGAGKSMLALQLAA 52 (279)
T ss_dssp STTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 689999999999875
No 270
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=92.73 E-value=0.041 Score=45.48 Aligned_cols=20 Identities=20% Similarity=0.114 Sum_probs=16.8
Q ss_pred CeEEEEECCHHHHHHHHhcc
Q 029455 87 GISVWLDVPLEALAQRIAAV 106 (193)
Q Consensus 87 ~~vV~L~~~~~~~~~Rl~~~ 106 (193)
++++++++|+++.++|+.+|
T Consensus 201 dlt~Lldl~pe~~l~RI~~R 220 (376)
T 1of1_A 201 TNIVLGALPEDRHIDRLAKR 220 (376)
T ss_dssp CEEEEEECCHHHHHHHHHHS
T ss_pred eEEEEecCCHHHHHHHHHhc
Confidence 46777788999999999874
No 271
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=92.70 E-value=0.047 Score=42.98 Aligned_cols=17 Identities=35% Similarity=0.374 Sum_probs=15.8
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
|||+||||+++.+++.+
T Consensus 46 ~~G~GKt~la~~l~~~l 62 (319)
T 2chq_A 46 PPGTGKTATAIALARDL 62 (319)
T ss_dssp SSSSSHHHHHHHHHHHH
T ss_pred cCCcCHHHHHHHHHHHh
Confidence 69999999999999986
No 272
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=92.67 E-value=0.038 Score=47.37 Aligned_cols=18 Identities=17% Similarity=0.146 Sum_probs=16.6
Q ss_pred CCCCchHHHHHHHHHhcC
Q 029455 1 MMGSGKTTVGKILSGVLG 18 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg 18 (193)
|||+|||++|+.|+..++
T Consensus 49 pPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 49 PPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp CSSSSHHHHHHHGGGGBS
T ss_pred CchHHHHHHHHHHHHHHh
Confidence 799999999999999885
No 273
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=92.66 E-value=0.039 Score=42.96 Aligned_cols=17 Identities=35% Similarity=0.544 Sum_probs=14.5
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
|+||||||+.+.|+..+
T Consensus 39 ~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 39 QNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp CSSSSHHHHHHHHTTSS
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 68999999999997543
No 274
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=92.62 E-value=0.051 Score=44.04 Aligned_cols=17 Identities=47% Similarity=0.450 Sum_probs=15.0
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
|+||||||+.+.|+..+
T Consensus 137 ~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 137 FNGSGKTTTIAKLANWL 153 (328)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 68999999999998755
No 275
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=92.56 E-value=0.042 Score=43.10 Aligned_cols=16 Identities=50% Similarity=0.661 Sum_probs=14.1
Q ss_pred CCCCchHHHHHHHHHh
Q 029455 1 MMGSGKTTVGKILSGV 16 (193)
Q Consensus 1 ~~GsGKSTia~~La~~ 16 (193)
++||||||+.+.|+-.
T Consensus 38 ~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 38 PNGSGKTTLLRAISGL 53 (263)
T ss_dssp CTTSSHHHHHHHHTTS
T ss_pred CCCCCHHHHHHHHhCC
Confidence 6899999999999754
No 276
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=92.54 E-value=0.035 Score=45.38 Aligned_cols=17 Identities=29% Similarity=0.473 Sum_probs=14.7
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
|+||||||+.+.|+--+
T Consensus 34 pnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 34 PTGAGKTLFLELIAGFH 50 (348)
T ss_dssp CCTHHHHHHHHHHHTSS
T ss_pred CCCccHHHHHHHHHcCC
Confidence 68999999999998543
No 277
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=92.44 E-value=0.053 Score=44.67 Aligned_cols=17 Identities=24% Similarity=0.307 Sum_probs=14.6
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
|+||||||+.+.|+--+
T Consensus 62 pnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 62 ASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp CTTSSHHHHHHHHHTSS
T ss_pred CCCchHHHHHHHHhcCC
Confidence 68999999999998643
No 278
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.42 E-value=0.055 Score=42.67 Aligned_cols=17 Identities=47% Similarity=0.442 Sum_probs=15.8
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
|||+||||+++.+++.+
T Consensus 50 ~~G~GKt~la~~l~~~l 66 (323)
T 1sxj_B 50 MPGIGKTTSVHCLAHEL 66 (323)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHh
Confidence 68999999999999986
No 279
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=92.38 E-value=0.058 Score=47.18 Aligned_cols=18 Identities=28% Similarity=0.571 Sum_probs=16.6
Q ss_pred CCCCchHHHHHHHHHhcC
Q 029455 1 MMGSGKTTVGKILSGVLG 18 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg 18 (193)
||||||||+++.|+..++
T Consensus 68 p~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 68 EPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp CTTSSHHHHHHHHHHTSC
T ss_pred CCCCCHHHHHHHHhccCC
Confidence 699999999999999875
No 280
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=92.29 E-value=0.067 Score=43.13 Aligned_cols=20 Identities=25% Similarity=0.187 Sum_probs=17.9
Q ss_pred CCCCchHHHHHHHHHhcCCc
Q 029455 1 MMGSGKTTVGKILSGVLGYS 20 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~ 20 (193)
|+|+||||+++.+|+.+...
T Consensus 32 ~~G~GKt~~a~~la~~l~~~ 51 (334)
T 1a5t_A 32 LPGMGDDALIYALSRYLLCQ 51 (334)
T ss_dssp CTTSCHHHHHHHHHHHHTCS
T ss_pred CCCchHHHHHHHHHHHHhCC
Confidence 68999999999999998753
No 281
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=92.24 E-value=0.056 Score=44.88 Aligned_cols=15 Identities=33% Similarity=0.355 Sum_probs=13.8
Q ss_pred CCCCchHHHHHHHHH
Q 029455 1 MMGSGKTTVGKILSG 15 (193)
Q Consensus 1 ~~GsGKSTia~~La~ 15 (193)
|+||||||+.+.|+-
T Consensus 55 psGsGKSTLLr~iaG 69 (390)
T 3gd7_A 55 RTGSGKSTLLSAFLR 69 (390)
T ss_dssp STTSSHHHHHHHHHT
T ss_pred CCCChHHHHHHHHhC
Confidence 689999999999985
No 282
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=92.20 E-value=0.059 Score=44.14 Aligned_cols=18 Identities=44% Similarity=0.420 Sum_probs=15.6
Q ss_pred CCCCchHHHHHHHHHhcC
Q 029455 1 MMGSGKTTVGKILSGVLG 18 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg 18 (193)
++||||||+.+.|+..+.
T Consensus 183 ~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 183 ETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp SSSSCHHHHHHHHHTTSC
T ss_pred CCCCCHHHHHHHHHhcCC
Confidence 689999999999987653
No 283
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=92.14 E-value=0.076 Score=38.45 Aligned_cols=18 Identities=44% Similarity=0.678 Sum_probs=15.4
Q ss_pred CCCCchHHHHHHHHHhcC
Q 029455 1 MMGSGKTTVGKILSGVLG 18 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg 18 (193)
+.||||||+.+.|.-.++
T Consensus 34 ~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 34 ANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp CTTSSHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHc
Confidence 579999999999986665
No 284
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=92.05 E-value=0.065 Score=42.69 Aligned_cols=26 Identities=35% Similarity=0.418 Sum_probs=19.1
Q ss_pred CCCCchHHHHHHHHHhc----CC--cEeechH
Q 029455 1 MMGSGKTTVGKILSGVL----GY--SFFDCDT 26 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l----g~--~~~d~d~ 26 (193)
++||||||++..||..+ |. .+++.|.
T Consensus 113 ~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~ 144 (296)
T 2px0_A 113 STGAGKTTTLAKLAAISMLEKHKKIAFITTDT 144 (296)
T ss_dssp STTSSHHHHHHHHHHHHHHTTCCCEEEEECCC
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCEEEEEecCc
Confidence 57999999999998644 43 4566664
No 285
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=91.97 E-value=0.081 Score=47.48 Aligned_cols=28 Identities=21% Similarity=0.291 Sum_probs=21.3
Q ss_pred CCCCchHHHHHHHHHhc---CC--cEeechHHH
Q 029455 1 MMGSGKTTVGKILSGVL---GY--SFFDCDTLI 28 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l---g~--~~~d~d~~~ 28 (193)
|||+|||++|+.|++.+ +. ..+++..+.
T Consensus 529 p~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~ 561 (758)
T 3pxi_A 529 PTGVGKTELARALAESIFGDEESMIRIDMSEYM 561 (758)
T ss_dssp CTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGC
T ss_pred CCCCCHHHHHHHHHHHhcCCCcceEEEechhcc
Confidence 69999999999999987 33 445555543
No 286
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=91.97 E-value=0.099 Score=42.11 Aligned_cols=25 Identities=24% Similarity=0.191 Sum_probs=20.6
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechH
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDT 26 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~ 26 (193)
++|+||||++..|.+ .|..++.-|.
T Consensus 152 ~sG~GKSt~a~~l~~-~g~~lv~dD~ 176 (314)
T 1ko7_A 152 DSGIGKSETALELIK-RGHRLVADDN 176 (314)
T ss_dssp STTSSHHHHHHHHHH-TTCEEEESSE
T ss_pred CCCCCHHHHHHHHHh-cCCceecCCe
Confidence 589999999999987 4888885554
No 287
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=91.94 E-value=0.064 Score=43.72 Aligned_cols=17 Identities=35% Similarity=0.554 Sum_probs=15.3
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
+|||||||++..|+-..
T Consensus 139 ~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 139 EFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp STTSSHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 69999999999998765
No 288
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=91.88 E-value=0.091 Score=47.07 Aligned_cols=17 Identities=29% Similarity=0.341 Sum_probs=15.9
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
+||+||||+++.|++.+
T Consensus 215 ~~GtGKT~la~~la~~l 231 (758)
T 1r6b_X 215 ESGVGKTAIAEGLAWRI 231 (758)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 69999999999999987
No 289
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=91.86 E-value=0.071 Score=43.78 Aligned_cols=17 Identities=41% Similarity=0.360 Sum_probs=15.1
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
++||||||+++.|+..+
T Consensus 165 ~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 165 VNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp CTTSCHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHhhc
Confidence 68999999999998765
No 290
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=91.86 E-value=0.092 Score=41.80 Aligned_cols=25 Identities=24% Similarity=0.336 Sum_probs=19.7
Q ss_pred CCCCchHHHHHHHHHhcCC--cEeech
Q 029455 1 MMGSGKTTVGKILSGVLGY--SFFDCD 25 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~--~~~d~d 25 (193)
++|+||||+++.+++.++. .++++.
T Consensus 38 ~~G~GKT~L~~~~~~~~~~~~~~~~~~ 64 (357)
T 2fna_A 38 LRRTGKSSIIKIGINELNLPYIYLDLR 64 (357)
T ss_dssp STTSSHHHHHHHHHHHHTCCEEEEEGG
T ss_pred CCCCCHHHHHHHHHHhcCCCEEEEEch
Confidence 6899999999999988754 455544
No 291
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=91.79 E-value=0.069 Score=41.95 Aligned_cols=17 Identities=29% Similarity=0.239 Sum_probs=14.8
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
++||||||+.+.|+..+
T Consensus 10 ~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 10 QSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp SSSSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 68999999999998654
No 292
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=91.76 E-value=0.088 Score=41.43 Aligned_cols=19 Identities=16% Similarity=0.385 Sum_probs=16.5
Q ss_pred CCCCchHHHHHHHHHhcCC
Q 029455 1 MMGSGKTTVGKILSGVLGY 19 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~ 19 (193)
|||+|||+++..||..+++
T Consensus 112 ppgtGKt~~a~ala~~~~l 130 (267)
T 1u0j_A 112 PATTGKTNIAEAIAHTVPF 130 (267)
T ss_dssp STTSSHHHHHHHHHHHSSC
T ss_pred CCCCCHHHHHHHHHhhhcc
Confidence 7999999999999986543
No 293
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=91.74 E-value=0.037 Score=45.30 Aligned_cols=17 Identities=41% Similarity=0.595 Sum_probs=14.6
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
|+||||||+.+.|+--+
T Consensus 39 pnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 39 PSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp SCHHHHHHHHHHHHTSS
T ss_pred CCCCcHHHHHHHHhCCC
Confidence 68999999999998543
No 294
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=91.72 E-value=0.071 Score=42.48 Aligned_cols=17 Identities=29% Similarity=0.395 Sum_probs=15.2
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
+||+|||++|+.+++..
T Consensus 33 e~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 33 DSGTGKELVARALHACS 49 (304)
T ss_dssp CTTSCHHHHHHHHHHHS
T ss_pred CCCchHHHHHHHHHHhC
Confidence 58999999999999854
No 295
>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*
Probab=91.57 E-value=0.33 Score=38.58 Aligned_cols=17 Identities=18% Similarity=0.153 Sum_probs=14.7
Q ss_pred CCCchHHHHHHHHHhcC
Q 029455 2 MGSGKTTVGKILSGVLG 18 (193)
Q Consensus 2 ~GsGKSTia~~La~~lg 18 (193)
.|.||+|+.+.|.+.+.
T Consensus 106 ~Gp~K~tl~~~Ll~~~p 122 (292)
T 3tvt_A 106 LGPLKDRINDDLISEYP 122 (292)
T ss_dssp ESTTHHHHHHHHHHHCT
T ss_pred eCCCHHHHHHHHHHhCh
Confidence 58899999999988764
No 296
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=91.54 E-value=0.084 Score=42.80 Aligned_cols=24 Identities=29% Similarity=0.318 Sum_probs=19.2
Q ss_pred CCCCchHHHHHHHHHhcC--CcEeec
Q 029455 1 MMGSGKTTVGKILSGVLG--YSFFDC 24 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg--~~~~d~ 24 (193)
||||||||+|..++...| ..|++.
T Consensus 131 pPGsGKTtLAlqlA~~~G~~VlyIs~ 156 (331)
T 2vhj_A 131 KGNSGKTPLVHALGEALGGKDKYATV 156 (331)
T ss_dssp SCSSSHHHHHHHHHHHHHTTSCCEEE
T ss_pred CCCCCHHHHHHHHHHhCCCCEEEEEe
Confidence 799999999999997644 346666
No 297
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=91.54 E-value=0.063 Score=42.70 Aligned_cols=17 Identities=35% Similarity=0.552 Sum_probs=14.5
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
++||||||+.+.|+-.+
T Consensus 72 ~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 72 STGAGKTSLLMMIMGEL 88 (290)
T ss_dssp STTSSHHHHHHHHTTSS
T ss_pred CCCCcHHHHHHHHhcCC
Confidence 68999999999997543
No 298
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=91.52 E-value=0.077 Score=43.64 Aligned_cols=17 Identities=29% Similarity=0.309 Sum_probs=14.9
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
|+||||||+.+.|+..+
T Consensus 144 ~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 144 PTGSGKSTTIASMIDYI 160 (372)
T ss_dssp SSSSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHhhc
Confidence 68999999999998754
No 299
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=91.44 E-value=0.082 Score=43.31 Aligned_cols=17 Identities=35% Similarity=0.348 Sum_probs=14.8
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
|+||||||+.+.|+..+
T Consensus 131 ptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 131 PTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp STTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHhcc
Confidence 68999999999997655
No 300
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=91.42 E-value=0.077 Score=44.99 Aligned_cols=17 Identities=24% Similarity=0.313 Sum_probs=14.8
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
++||||||+++.|+..+
T Consensus 146 pnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 146 GSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp STTSSHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHhCcc
Confidence 68999999999998744
No 301
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=91.39 E-value=0.092 Score=38.40 Aligned_cols=16 Identities=19% Similarity=0.177 Sum_probs=14.1
Q ss_pred CCCCchHHHHHHHHHh
Q 029455 1 MMGSGKTTVGKILSGV 16 (193)
Q Consensus 1 ~~GsGKSTia~~La~~ 16 (193)
++||||||+.+.|+..
T Consensus 37 ~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 37 DSGVGKSNLLSRFTRN 52 (191)
T ss_dssp CTTSSHHHHHHHHHHS
T ss_pred cCCCCHHHHHHHHhcC
Confidence 5899999999999863
No 302
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=91.39 E-value=0.068 Score=43.26 Aligned_cols=17 Identities=41% Similarity=0.370 Sum_probs=15.1
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
++||||||+.+.|+..+
T Consensus 179 ~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 179 GTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp STTSCHHHHHHHGGGGS
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 68999999999998765
No 303
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=91.34 E-value=0.092 Score=40.27 Aligned_cols=25 Identities=32% Similarity=0.461 Sum_probs=18.7
Q ss_pred CCCCchHHHHHHHHHhc--C--CcEeech
Q 029455 1 MMGSGKTTVGKILSGVL--G--YSFFDCD 25 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l--g--~~~~d~d 25 (193)
.+||||||++..|+..+ | ..++|.|
T Consensus 22 kgGvGKTTl~~~La~~l~~g~~v~vvd~D 50 (262)
T 1yrb_A 22 TAGSGKTTLTGEFGRYLEDNYKVAYVNLD 50 (262)
T ss_dssp STTSSHHHHHHHHHHHHTTTSCEEEEECC
T ss_pred CCCCCHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 37999999999998654 3 3456655
No 304
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=91.27 E-value=0.098 Score=38.95 Aligned_cols=17 Identities=29% Similarity=0.288 Sum_probs=15.0
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
.+||||||+...|+..+
T Consensus 38 ~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 38 AIGSGKTLLIERTIERI 54 (221)
T ss_dssp CTTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 48999999999998875
No 305
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=91.27 E-value=0.048 Score=43.77 Aligned_cols=17 Identities=29% Similarity=0.436 Sum_probs=14.6
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
++||||||+.+.|+.-+
T Consensus 88 ~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 88 PSGAGKSTILRLLFRFY 104 (306)
T ss_dssp SSCHHHHHHHHHHTTSS
T ss_pred CCCchHHHHHHHHHcCC
Confidence 68999999999997644
No 306
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=91.19 E-value=0.088 Score=47.94 Aligned_cols=27 Identities=30% Similarity=0.411 Sum_probs=20.6
Q ss_pred CCCCchHHHHHHHHHhc---CCcE--eechHH
Q 029455 1 MMGSGKTTVGKILSGVL---GYSF--FDCDTL 27 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l---g~~~--~d~d~~ 27 (193)
|||+|||++|+.|++.+ +.++ +++..+
T Consensus 596 p~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~ 627 (854)
T 1qvr_A 596 PTGVGKTELAKTLAATLFDTEEAMIRIDMTEY 627 (854)
T ss_dssp CSSSSHHHHHHHHHHHHHSSGGGEEEECTTTC
T ss_pred CCCCCHHHHHHHHHHHhcCCCCcEEEEechhc
Confidence 69999999999999987 4444 454443
No 307
>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A
Probab=91.11 E-value=0.2 Score=39.88 Aligned_cols=17 Identities=18% Similarity=0.192 Sum_probs=14.3
Q ss_pred CCCchHHHHHHHHHhcC
Q 029455 2 MGSGKTTVGKILSGVLG 18 (193)
Q Consensus 2 ~GsGKSTia~~La~~lg 18 (193)
+|.||+||.+.|.+.+.
T Consensus 111 ~GPgK~tl~~~L~~~~~ 127 (295)
T 1kjw_A 111 LGPTKDRANDDLLSEFP 127 (295)
T ss_dssp ESTTHHHHHHHHHHHCT
T ss_pred ECCCHHHHHHHHHhhCc
Confidence 57899999999988663
No 308
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=91.11 E-value=0.094 Score=42.50 Aligned_cols=17 Identities=35% Similarity=0.479 Sum_probs=14.7
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
+|||||||+.+.|+..+
T Consensus 63 ~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 63 VPGVGKSTTIDALGSLL 79 (337)
T ss_dssp CTTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhh
Confidence 69999999999998643
No 309
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=91.10 E-value=0.093 Score=43.01 Aligned_cols=25 Identities=32% Similarity=0.377 Sum_probs=18.5
Q ss_pred CCCCchHHHHHHHHHhc---C--CcEeech
Q 029455 1 MMGSGKTTVGKILSGVL---G--YSFFDCD 25 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l---g--~~~~d~d 25 (193)
+|||||||++..++..+ | ..|++..
T Consensus 69 ppGsGKSTLal~la~~~~~~gg~VlyId~E 98 (356)
T 3hr8_A 69 QESSGKTTLALHAIAEAQKMGGVAAFIDAE 98 (356)
T ss_dssp STTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCCCCHHHHHHHHHHHHHhcCCeEEEEecc
Confidence 69999999999998754 3 3356544
No 310
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=91.08 E-value=0.065 Score=41.09 Aligned_cols=18 Identities=28% Similarity=0.198 Sum_probs=15.3
Q ss_pred CCCCchHHHHHHHHHhcC
Q 029455 1 MMGSGKTTVGKILSGVLG 18 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg 18 (193)
|+||||||+.+.|+-.+.
T Consensus 35 pnGsGKSTll~~i~g~~~ 52 (227)
T 1qhl_A 35 GNGAGKSTTMAAFVTALI 52 (227)
T ss_dssp CCSHHHHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHhcccc
Confidence 689999999999986553
No 311
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=91.02 E-value=0.095 Score=44.90 Aligned_cols=17 Identities=35% Similarity=0.329 Sum_probs=14.9
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
++||||||+.+.|+..+
T Consensus 301 pNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 301 VNGVGKTTTIGKLARQF 317 (503)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCcccHHHHHHHHHHHh
Confidence 58999999999998754
No 312
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=90.92 E-value=0.071 Score=44.83 Aligned_cols=26 Identities=35% Similarity=0.466 Sum_probs=19.9
Q ss_pred CCCCchHHHHHHHHHhcC-----CcEeechH
Q 029455 1 MMGSGKTTVGKILSGVLG-----YSFFDCDT 26 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg-----~~~~d~d~ 26 (193)
++||||||++..||..+. ..++++|.
T Consensus 107 ~~GvGKTTla~~La~~l~~~G~kVllv~~D~ 137 (432)
T 2v3c_C 107 IQGSGKTTTAAKLARYIQKRGLKPALIAADT 137 (432)
T ss_dssp CSSSSTTHHHHHHHHHHHHHHCCEEEECCSC
T ss_pred CCCCCHHHHHHHHHHHHHHcCCeEEEEeccc
Confidence 589999999999998652 44566663
No 313
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=90.85 E-value=0.098 Score=41.67 Aligned_cols=17 Identities=24% Similarity=0.190 Sum_probs=14.6
Q ss_pred CCCCchHHHHHHHHHhcC
Q 029455 1 MMGSGKTTVGKILSGVLG 18 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg 18 (193)
++||||||+.+.|+ .+.
T Consensus 173 ~sG~GKSTLln~l~-~~~ 189 (302)
T 2yv5_A 173 PSGVGKSSILSRLT-GEE 189 (302)
T ss_dssp STTSSHHHHHHHHH-SCC
T ss_pred CCCCCHHHHHHHHH-Hhh
Confidence 68999999999998 543
No 314
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=90.77 E-value=0.1 Score=43.87 Aligned_cols=26 Identities=38% Similarity=0.567 Sum_probs=19.3
Q ss_pred CCCCchHHHHHHHHHhc---CCc--EeechH
Q 029455 1 MMGSGKTTVGKILSGVL---GYS--FFDCDT 26 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l---g~~--~~d~d~ 26 (193)
++||||||++..||..+ |.. ++++|.
T Consensus 105 ~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~ 135 (433)
T 3kl4_A 105 VQGSGKTTTAGKLAYFYKKRGYKVGLVAADV 135 (433)
T ss_dssp CTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCCCCHHHHHHHHHHHHHHcCCeEEEEecCc
Confidence 68999999999998655 433 456664
No 315
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=90.71 E-value=0.11 Score=39.67 Aligned_cols=17 Identities=29% Similarity=-0.072 Sum_probs=14.5
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
+|||||||.+..++.++
T Consensus 20 ~mGsGKTT~ll~~~~r~ 36 (223)
T 2b8t_A 20 PMFAGKTAELIRRLHRL 36 (223)
T ss_dssp STTSCHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHH
Confidence 47999999998887766
No 316
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=90.58 E-value=0.12 Score=37.91 Aligned_cols=16 Identities=19% Similarity=0.177 Sum_probs=14.0
Q ss_pred CCCCchHHHHHHHHHh
Q 029455 1 MMGSGKTTVGKILSGV 16 (193)
Q Consensus 1 ~~GsGKSTia~~La~~ 16 (193)
++||||||+.+.|...
T Consensus 13 ~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 13 DSGVGKSNLLSRFTRN 28 (199)
T ss_dssp STTSSHHHHHHHHHHS
T ss_pred cCCCCHHHHHHHHhcC
Confidence 5899999999999863
No 317
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=90.42 E-value=0.12 Score=43.64 Aligned_cols=17 Identities=35% Similarity=0.499 Sum_probs=15.2
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
+|||||||++..++..+
T Consensus 53 ~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 53 PAGTGATTLTKFIIEAL 69 (459)
T ss_dssp CTTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 68999999999998776
No 318
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=90.35 E-value=0.12 Score=41.63 Aligned_cols=26 Identities=35% Similarity=0.463 Sum_probs=19.1
Q ss_pred CCCCchHHHHHHHHHhc---CC--cEeechH
Q 029455 1 MMGSGKTTVGKILSGVL---GY--SFFDCDT 26 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l---g~--~~~d~d~ 26 (193)
++||||||++..||..+ |. -+++.|.
T Consensus 113 ~~G~GKTT~~~~LA~~l~~~g~kVllid~D~ 143 (320)
T 1zu4_A 113 VNGTGKTTSLAKMANYYAELGYKVLIAAADT 143 (320)
T ss_dssp STTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 48999999999998765 33 3456654
No 319
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=90.35 E-value=0.18 Score=37.55 Aligned_cols=17 Identities=24% Similarity=-0.148 Sum_probs=14.8
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
++||||||.+-.++.++
T Consensus 16 ~mgsGKTT~ll~~a~r~ 32 (191)
T 1xx6_A 16 PMYSGKSEELIRRIRRA 32 (191)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHH
Confidence 47999999999888876
No 320
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=90.33 E-value=0.11 Score=43.15 Aligned_cols=14 Identities=21% Similarity=0.389 Sum_probs=12.6
Q ss_pred CCCCchHHHHHHHH
Q 029455 1 MMGSGKTTVGKILS 14 (193)
Q Consensus 1 ~~GsGKSTia~~La 14 (193)
+|||||||++..|+
T Consensus 186 ~sGsGKTTLl~~la 199 (400)
T 3lda_A 186 EFRTGKSQLCHTLA 199 (400)
T ss_dssp STTSSHHHHHHHHH
T ss_pred CCCCChHHHHHHHH
Confidence 69999999999776
No 321
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=90.26 E-value=0.091 Score=41.81 Aligned_cols=15 Identities=20% Similarity=0.430 Sum_probs=13.4
Q ss_pred CCCCchHHHHHHHHH
Q 029455 1 MMGSGKTTVGKILSG 15 (193)
Q Consensus 1 ~~GsGKSTia~~La~ 15 (193)
++||||||+.+.|+.
T Consensus 177 ~sG~GKSTll~~l~g 191 (301)
T 1u0l_A 177 LSGVGKSSLLNAINP 191 (301)
T ss_dssp STTSSHHHHHHHHST
T ss_pred CCCCcHHHHHHHhcc
Confidence 689999999999964
No 322
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=90.10 E-value=0.16 Score=40.91 Aligned_cols=26 Identities=23% Similarity=0.210 Sum_probs=20.9
Q ss_pred CCCCchHHHHHHHHHhcCCcEeechHH
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFDCDTL 27 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d~d~~ 27 (193)
+||+||||+|-.|.+ .|+.++.=|..
T Consensus 155 ~sG~GKStlal~l~~-~G~~lv~DD~v 180 (312)
T 1knx_A 155 RSGIGKSECALDLIN-KNHLFVGDDAI 180 (312)
T ss_dssp SSSSSHHHHHHHHHT-TTCEEEEEEEE
T ss_pred CCCCCHHHHHHHHHH-cCCEEEeCCEE
Confidence 589999999999975 68888765543
No 323
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=90.09 E-value=0.066 Score=46.86 Aligned_cols=23 Identities=17% Similarity=0.244 Sum_probs=19.6
Q ss_pred CCCCchHHHHHHHHHhcCCcEee
Q 029455 1 MMGSGKTTVGKILSGVLGYSFFD 23 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~d 23 (193)
+||+|||++|+.+++.++...+.
T Consensus 335 ppGtGKT~LAr~la~~~~r~~~~ 357 (595)
T 3f9v_A 335 DPGTAKSQMLQFISRVAPRAVYT 357 (595)
T ss_dssp SSCCTHHHHHHSSSTTCSCEECC
T ss_pred CCchHHHHHHHHHHHhCCCceec
Confidence 69999999999999988765554
No 324
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=90.07 E-value=0.13 Score=41.93 Aligned_cols=25 Identities=36% Similarity=0.387 Sum_probs=18.3
Q ss_pred CCCCchHHHHHHHHHhc---C--CcEeech
Q 029455 1 MMGSGKTTVGKILSGVL---G--YSFFDCD 25 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l---g--~~~~d~d 25 (193)
+|||||||++..++... | ..|++.+
T Consensus 69 ~pGsGKTtLal~la~~~~~~g~~vlyi~~E 98 (349)
T 2zr9_A 69 PESSGKTTVALHAVANAQAAGGIAAFIDAE 98 (349)
T ss_dssp STTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 69999999999987543 2 4556644
No 325
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=90.04 E-value=0.15 Score=38.14 Aligned_cols=14 Identities=36% Similarity=0.228 Sum_probs=12.2
Q ss_pred CCCCchHHHHHHHH
Q 029455 1 MMGSGKTTVGKILS 14 (193)
Q Consensus 1 ~~GsGKSTia~~La 14 (193)
+||||||++|..+.
T Consensus 13 ~pGsGKT~~a~~~~ 26 (199)
T 2r2a_A 13 TPGSGKTLKMVSMM 26 (199)
T ss_dssp CTTSSHHHHHHHHH
T ss_pred CCCCCHHHHHHHHH
Confidence 59999999998864
No 326
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=90.03 E-value=0.14 Score=42.92 Aligned_cols=18 Identities=33% Similarity=0.137 Sum_probs=15.7
Q ss_pred CCCCchHHHHHHHHHhcC
Q 029455 1 MMGSGKTTVGKILSGVLG 18 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg 18 (193)
|+||||||+.+.|...+.
T Consensus 175 pnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 175 PTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp STTSCHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHhhcC
Confidence 689999999999987664
No 327
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=89.91 E-value=0.14 Score=36.27 Aligned_cols=15 Identities=33% Similarity=0.414 Sum_probs=13.5
Q ss_pred CCCCchHHHHHHHHH
Q 029455 1 MMGSGKTTVGKILSG 15 (193)
Q Consensus 1 ~~GsGKSTia~~La~ 15 (193)
++|+||||+.+.|..
T Consensus 11 ~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 11 NPNVGKSTIFNALTG 25 (165)
T ss_dssp STTSSHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHhC
Confidence 589999999999975
No 328
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=89.89 E-value=0.13 Score=42.10 Aligned_cols=16 Identities=31% Similarity=0.495 Sum_probs=14.0
Q ss_pred CCCCchHHHHHHHHHh
Q 029455 1 MMGSGKTTVGKILSGV 16 (193)
Q Consensus 1 ~~GsGKSTia~~La~~ 16 (193)
++||||||+.+.|+..
T Consensus 223 ~sG~GKSTLln~L~g~ 238 (358)
T 2rcn_A 223 QSGVGKSSLLNALLGL 238 (358)
T ss_dssp CTTSSHHHHHHHHHCC
T ss_pred CCCccHHHHHHHHhcc
Confidence 6899999999999743
No 329
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=89.79 E-value=0.14 Score=41.59 Aligned_cols=17 Identities=29% Similarity=0.387 Sum_probs=14.8
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
+|||||||+.+.|...+
T Consensus 82 ~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 82 PPGAGKSTFIEYFGKML 98 (349)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 69999999999998643
No 330
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=89.75 E-value=0.21 Score=37.76 Aligned_cols=25 Identities=16% Similarity=0.170 Sum_probs=18.9
Q ss_pred CCCchHHHHHHHHHhcC----Cc--EeechH
Q 029455 2 MGSGKTTVGKILSGVLG----YS--FFDCDT 26 (193)
Q Consensus 2 ~GsGKSTia~~La~~lg----~~--~~d~d~ 26 (193)
.|+||||++..||..|. .+ ++|+|.
T Consensus 14 GGvGKTt~a~~LA~~la~~~g~~VlliD~D~ 44 (245)
T 3ea0_A 14 GGDGGSCIAANFAFALSQEPDIHVLAVDISL 44 (245)
T ss_dssp TTSSHHHHHHHHHHHHTTSTTCCEEEEECCT
T ss_pred CCcchHHHHHHHHHHHHhCcCCCEEEEECCC
Confidence 59999999999987663 33 567764
No 331
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=89.65 E-value=0.16 Score=42.68 Aligned_cols=18 Identities=17% Similarity=0.193 Sum_probs=16.0
Q ss_pred CCCCchHHHHHHHHHhcC
Q 029455 1 MMGSGKTTVGKILSGVLG 18 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg 18 (193)
++||||||+.+.|+..+.
T Consensus 165 ~sGsGKSTLl~~Iag~~~ 182 (438)
T 2dpy_A 165 GSGVGKSVLLGMMARYTR 182 (438)
T ss_dssp CTTSSHHHHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHhcccC
Confidence 689999999999998764
No 332
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=89.59 E-value=0.13 Score=41.20 Aligned_cols=16 Identities=31% Similarity=0.501 Sum_probs=14.1
Q ss_pred CCCCchHHHHHHHHHh
Q 029455 1 MMGSGKTTVGKILSGV 16 (193)
Q Consensus 1 ~~GsGKSTia~~La~~ 16 (193)
+.||||||+.+.|...
T Consensus 12 ~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 12 FLGAGKTTLLRHILNE 27 (318)
T ss_dssp SSSSSCHHHHHHHHHS
T ss_pred cCCCCHHHHHHHHHhh
Confidence 5799999999999854
No 333
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=89.54 E-value=0.15 Score=41.41 Aligned_cols=25 Identities=32% Similarity=0.394 Sum_probs=19.1
Q ss_pred CCCCchHHHHHHHHHhc---CC--cEeech
Q 029455 1 MMGSGKTTVGKILSGVL---GY--SFFDCD 25 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l---g~--~~~d~d 25 (193)
.||+||||++..|+..+ |. .+++.|
T Consensus 87 ~~G~GKSTl~~~L~~~l~~~g~kV~vi~~D 116 (355)
T 3p32_A 87 VPGVGKSTAIEALGMHLIERGHRVAVLAVD 116 (355)
T ss_dssp CTTSSHHHHHHHHHHHHHTTTCCEEEEEEC
T ss_pred CCCCCHHHHHHHHHHHHHhCCCceEEEecC
Confidence 58999999999998765 43 455655
No 334
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=89.54 E-value=0.15 Score=42.99 Aligned_cols=27 Identities=41% Similarity=0.528 Sum_probs=20.1
Q ss_pred CCCCchHHHHHHHHHhc---CC--cEeechHH
Q 029455 1 MMGSGKTTVGKILSGVL---GY--SFFDCDTL 27 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l---g~--~~~d~d~~ 27 (193)
++||||||++..||..+ |. -++++|.+
T Consensus 108 ~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~ 139 (443)
T 3dm5_A 108 IQGSGKTTTVAKLARYFQKRGYKVGVVCSDTW 139 (443)
T ss_dssp CTTSSHHHHHHHHHHHHHTTTCCEEEEECCCS
T ss_pred cCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence 58999999999998755 43 35677653
No 335
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=89.49 E-value=0.16 Score=38.94 Aligned_cols=19 Identities=26% Similarity=0.312 Sum_probs=17.5
Q ss_pred CeEEEEECCHHHHHHHHhc
Q 029455 87 GISVWLDVPLEALAQRIAA 105 (193)
Q Consensus 87 ~~vV~L~~~~~~~~~Rl~~ 105 (193)
+-++.++++|+.+++|+..
T Consensus 157 ~~v~lvD~~p~~l~~rl~~ 175 (228)
T 2r8r_A 157 FDLVLIDLPPRELLERLRD 175 (228)
T ss_dssp SEEEEBCCCHHHHHHHHHT
T ss_pred CeEEEecCCHHHHHHHHHC
Confidence 5799999999999999986
No 336
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=89.34 E-value=0.16 Score=40.28 Aligned_cols=17 Identities=41% Similarity=0.452 Sum_probs=14.7
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
++||||||++..||..+
T Consensus 106 ~~G~GKTT~~~~la~~~ 122 (295)
T 1ls1_A 106 LQGSGKTTTAAKLALYY 122 (295)
T ss_dssp CTTTTHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 57999999999998755
No 337
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=89.27 E-value=0.17 Score=38.26 Aligned_cols=15 Identities=33% Similarity=0.297 Sum_probs=12.6
Q ss_pred CCCCchHHHHHHHHH
Q 029455 1 MMGSGKTTVGKILSG 15 (193)
Q Consensus 1 ~~GsGKSTia~~La~ 15 (193)
+||+|||++|..++.
T Consensus 38 ~pG~GKT~l~l~~~~ 52 (251)
T 2zts_A 38 GTGTGKTTFAAQFIY 52 (251)
T ss_dssp CTTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 599999999987753
No 338
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=89.27 E-value=0.19 Score=34.98 Aligned_cols=16 Identities=19% Similarity=0.048 Sum_probs=13.8
Q ss_pred CCCCchHHHHHHHHHh
Q 029455 1 MMGSGKTTVGKILSGV 16 (193)
Q Consensus 1 ~~GsGKSTia~~La~~ 16 (193)
++||||||+.+.|...
T Consensus 9 ~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 9 RPNVGKSSLFNRLLKK 24 (161)
T ss_dssp CTTSSHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHhCC
Confidence 4799999999999763
No 339
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=89.10 E-value=0.16 Score=43.86 Aligned_cols=17 Identities=53% Similarity=0.696 Sum_probs=14.5
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
++||||||+.+.|+-.+
T Consensus 55 ~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 55 PNGTGKSTAVKILAGQL 71 (538)
T ss_dssp CTTSSHHHHHHHHHTSS
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 68999999999998543
No 340
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=89.07 E-value=0.19 Score=34.86 Aligned_cols=16 Identities=25% Similarity=0.189 Sum_probs=13.7
Q ss_pred CCCCchHHHHHHHHHh
Q 029455 1 MMGSGKTTVGKILSGV 16 (193)
Q Consensus 1 ~~GsGKSTia~~La~~ 16 (193)
.+||||||+.+.|...
T Consensus 11 ~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 11 AGGVGKSALTIQLIQN 26 (166)
T ss_dssp STTSSHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHhC
Confidence 4799999999999754
No 341
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=89.00 E-value=0.15 Score=36.89 Aligned_cols=15 Identities=47% Similarity=0.430 Sum_probs=13.3
Q ss_pred CCCCchHHHHHHHHH
Q 029455 1 MMGSGKTTVGKILSG 15 (193)
Q Consensus 1 ~~GsGKSTia~~La~ 15 (193)
++|+||||+.+.|..
T Consensus 10 ~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 10 NTGSGKTTLLQQLMK 24 (184)
T ss_dssp CTTSSHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHhc
Confidence 589999999999975
No 342
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=88.92 E-value=0.2 Score=40.75 Aligned_cols=18 Identities=22% Similarity=0.233 Sum_probs=16.0
Q ss_pred CCCCchHHHHHHHHHhcC
Q 029455 1 MMGSGKTTVGKILSGVLG 18 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg 18 (193)
++||||||+.+.|+..+.
T Consensus 79 ~nGaGKTTLl~~I~g~~~ 96 (347)
T 2obl_A 79 GSGVGKSTLLGMICNGAS 96 (347)
T ss_dssp CTTSSHHHHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHhcCCC
Confidence 689999999999998764
No 343
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=88.91 E-value=0.16 Score=43.55 Aligned_cols=18 Identities=28% Similarity=0.182 Sum_probs=15.4
Q ss_pred CCCCchHHHHHHHHHhcC
Q 029455 1 MMGSGKTTVGKILSGVLG 18 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg 18 (193)
++||||||+.+.|+..+.
T Consensus 268 ptGSGKTTlL~aL~~~i~ 285 (511)
T 2oap_1 268 ETASGKTTTLNAIMMFIP 285 (511)
T ss_dssp STTSSHHHHHHHHGGGSC
T ss_pred CCCCCHHHHHHHHHhhCC
Confidence 689999999999987653
No 344
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=88.90 E-value=0.16 Score=40.48 Aligned_cols=25 Identities=32% Similarity=0.472 Sum_probs=19.2
Q ss_pred CCCCchHHHHHHHHHhc---C--CcEeech
Q 029455 1 MMGSGKTTVGKILSGVL---G--YSFFDCD 25 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l---g--~~~~d~d 25 (193)
++|+||||++..||..+ | ..+++.|
T Consensus 106 ~~G~GKTT~~~~la~~~~~~g~~v~l~~~D 135 (297)
T 1j8m_F 106 VQGTGKTTTAGKLAYFYKKKGFKVGLVGAD 135 (297)
T ss_dssp SSCSSTTHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCCCCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 58999999999998765 3 3455666
No 345
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=88.85 E-value=0.19 Score=37.47 Aligned_cols=17 Identities=41% Similarity=0.434 Sum_probs=14.9
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
.+||||||+...|+..+
T Consensus 46 ~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 46 AIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 47999999999998765
No 346
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=88.83 E-value=0.2 Score=34.99 Aligned_cols=15 Identities=13% Similarity=0.042 Sum_probs=13.4
Q ss_pred CCCCchHHHHHHHHH
Q 029455 1 MMGSGKTTVGKILSG 15 (193)
Q Consensus 1 ~~GsGKSTia~~La~ 15 (193)
.+||||||+.+.|..
T Consensus 13 ~~~~GKssl~~~l~~ 27 (168)
T 1z2a_A 13 NGAVGKSSMIQRYCK 27 (168)
T ss_dssp STTSSHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHc
Confidence 479999999999975
No 347
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=88.81 E-value=0.25 Score=39.59 Aligned_cols=17 Identities=41% Similarity=0.427 Sum_probs=14.8
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
+|||||||++..++...
T Consensus 115 ~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 115 EFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp STTSSHHHHHHHHHHHT
T ss_pred CCCCCHhHHHHHHHHHH
Confidence 69999999999998753
No 348
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=88.56 E-value=0.19 Score=42.92 Aligned_cols=17 Identities=29% Similarity=0.225 Sum_probs=14.8
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
|+||||||+.+.|+--+
T Consensus 37 ~nGsGKSTLl~~l~Gl~ 53 (483)
T 3euj_A 37 GNGAGKSTTMAGFVTAL 53 (483)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHhcCC
Confidence 68999999999998644
No 349
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=88.50 E-value=0.2 Score=35.94 Aligned_cols=15 Identities=33% Similarity=0.414 Sum_probs=13.5
Q ss_pred CCCCchHHHHHHHHH
Q 029455 1 MMGSGKTTVGKILSG 15 (193)
Q Consensus 1 ~~GsGKSTia~~La~ 15 (193)
++|+||||+.+.|..
T Consensus 15 ~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 15 NPNVGKSTIFNALTG 29 (188)
T ss_dssp STTSSHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHhC
Confidence 479999999999975
No 350
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=88.50 E-value=0.21 Score=35.81 Aligned_cols=16 Identities=25% Similarity=0.362 Sum_probs=14.0
Q ss_pred CCCCchHHHHHHHHHh
Q 029455 1 MMGSGKTTVGKILSGV 16 (193)
Q Consensus 1 ~~GsGKSTia~~La~~ 16 (193)
+||+||||+.+.|...
T Consensus 12 ~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 12 RPNAGKSSLLNALAGR 27 (172)
T ss_dssp STTSSHHHHHHHHHTS
T ss_pred CCCCCHHHHHHHHhCC
Confidence 4899999999999863
No 351
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=88.49 E-value=0.18 Score=43.92 Aligned_cols=17 Identities=29% Similarity=0.575 Sum_probs=14.8
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
|+||||||+.+.|+.-+
T Consensus 377 ~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 377 RSGSGKSTIANLFTRFY 393 (582)
T ss_pred CCCCCHHHHHHHHhcCC
Confidence 68999999999998654
No 352
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=88.37 E-value=0.21 Score=40.41 Aligned_cols=17 Identities=29% Similarity=0.380 Sum_probs=14.7
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
+||+||||+.+.|+..+
T Consensus 64 ~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 64 TPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp CTTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 58999999999998654
No 353
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=88.24 E-value=0.16 Score=44.12 Aligned_cols=17 Identities=29% Similarity=0.577 Sum_probs=14.7
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
|+||||||+.+.|+.-+
T Consensus 377 ~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 377 RSGSGKSTIASLITRFY 393 (582)
T ss_dssp CTTSSHHHHHHHHTTTT
T ss_pred CCCCCHHHHHHHHhhcc
Confidence 68999999999997644
No 354
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=88.17 E-value=0.24 Score=34.40 Aligned_cols=16 Identities=19% Similarity=0.133 Sum_probs=13.5
Q ss_pred CCCCchHHHHHHHHHh
Q 029455 1 MMGSGKTTVGKILSGV 16 (193)
Q Consensus 1 ~~GsGKSTia~~La~~ 16 (193)
++|+||||+.+.|...
T Consensus 11 ~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 11 SGGVGKSALTVQFVTG 26 (167)
T ss_dssp CTTSSHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHcC
Confidence 4899999999998753
No 355
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=88.14 E-value=0.21 Score=40.48 Aligned_cols=16 Identities=25% Similarity=0.322 Sum_probs=14.5
Q ss_pred CCCCchHHHHHHHHHh
Q 029455 1 MMGSGKTTVGKILSGV 16 (193)
Q Consensus 1 ~~GsGKSTia~~La~~ 16 (193)
+|||||||++..++..
T Consensus 130 ~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 130 EFRTGKTQLSHTLCVT 145 (343)
T ss_dssp CTTCTHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH
Confidence 6999999999999875
No 356
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=88.09 E-value=0.11 Score=38.22 Aligned_cols=15 Identities=20% Similarity=0.291 Sum_probs=13.0
Q ss_pred CCCCchHHHHHHHHH
Q 029455 1 MMGSGKTTVGKILSG 15 (193)
Q Consensus 1 ~~GsGKSTia~~La~ 15 (193)
++||||||+.+.|..
T Consensus 34 ~~g~GKSTLl~~l~g 48 (210)
T 1pui_A 34 RSNAGKSSALNTLTN 48 (210)
T ss_dssp CTTSSHHHHHTTTCC
T ss_pred CCCCCHHHHHHHHhC
Confidence 589999999998864
No 357
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=88.09 E-value=0.21 Score=43.46 Aligned_cols=17 Identities=29% Similarity=0.411 Sum_probs=14.5
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
+|||||||+.+.|...+
T Consensus 212 ~pGTGKTt~i~~l~~~l 228 (574)
T 3e1s_A 212 GPGTGKSTTTKAVADLA 228 (574)
T ss_dssp CTTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 69999999999987644
No 358
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=88.06 E-value=0.2 Score=42.93 Aligned_cols=13 Identities=31% Similarity=0.401 Sum_probs=11.8
Q ss_pred CCCCchHHHHHHH
Q 029455 1 MMGSGKTTVGKIL 13 (193)
Q Consensus 1 ~~GsGKSTia~~L 13 (193)
++||||||+++.+
T Consensus 47 ~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 47 TSGTGKTLFSIQF 59 (525)
T ss_dssp STTSSHHHHHHHH
T ss_pred CCCCCHHHHHHHH
Confidence 6899999999994
No 359
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=87.89 E-value=0.23 Score=40.63 Aligned_cols=24 Identities=33% Similarity=0.411 Sum_probs=18.4
Q ss_pred CCCCchHHHHHHHHHhc---C--CcEeec
Q 029455 1 MMGSGKTTVGKILSGVL---G--YSFFDC 24 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l---g--~~~~d~ 24 (193)
+|||||||+|..|+... | ..|+++
T Consensus 71 ~pGsGKTtLal~la~~~~~~g~~vlyid~ 99 (356)
T 1u94_A 71 PESSGKTTLTLQVIAAAQREGKTCAFIDA 99 (356)
T ss_dssp STTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 59999999999988643 3 456776
No 360
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=87.86 E-value=0.26 Score=34.33 Aligned_cols=16 Identities=19% Similarity=0.065 Sum_probs=13.6
Q ss_pred CCCCchHHHHHHHHHh
Q 029455 1 MMGSGKTTVGKILSGV 16 (193)
Q Consensus 1 ~~GsGKSTia~~La~~ 16 (193)
.+||||||+.+.|...
T Consensus 12 ~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 12 SGGVGKSALTLQFMYD 27 (168)
T ss_dssp STTSSHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHhC
Confidence 4799999999999753
No 361
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=87.77 E-value=0.25 Score=38.07 Aligned_cols=25 Identities=40% Similarity=0.507 Sum_probs=19.1
Q ss_pred CCCchHHHHHHHHHhc--CC--cEeechH
Q 029455 2 MGSGKTTVGKILSGVL--GY--SFFDCDT 26 (193)
Q Consensus 2 ~GsGKSTia~~La~~l--g~--~~~d~d~ 26 (193)
.|+||||++..||..| |. -++|+|.
T Consensus 37 GGvGKTT~a~~LA~~la~g~~VlliD~D~ 65 (267)
T 3k9g_A 37 GGVGKSTSAIILATLLSKNNKVLLIDMDT 65 (267)
T ss_dssp SSSCHHHHHHHHHHHHTTTSCEEEEEECT
T ss_pred CCchHHHHHHHHHHHHHCCCCEEEEECCC
Confidence 5999999999998877 44 3567663
No 362
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=87.74 E-value=0.2 Score=42.07 Aligned_cols=16 Identities=31% Similarity=0.324 Sum_probs=13.9
Q ss_pred CCCCchHHHHHHHHHh
Q 029455 1 MMGSGKTTVGKILSGV 16 (193)
Q Consensus 1 ~~GsGKSTia~~La~~ 16 (193)
++||||||+.+.|+..
T Consensus 50 ~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 50 ETGLGKSTLMDTLFNT 65 (427)
T ss_dssp STTSSSHHHHHHHHTS
T ss_pred CCCCCHHHHHHHHhCc
Confidence 5899999999999753
No 363
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=87.64 E-value=0.19 Score=43.46 Aligned_cols=17 Identities=59% Similarity=0.698 Sum_probs=14.5
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
|.||||||+.+.|+-.+
T Consensus 33 pNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 33 KNGVGKTTVLKILAGEI 49 (538)
T ss_dssp CTTSSHHHHHHHHTTSS
T ss_pred CCCCcHHHHHHHHhcCC
Confidence 68999999999997543
No 364
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=87.62 E-value=0.29 Score=40.21 Aligned_cols=25 Identities=28% Similarity=0.445 Sum_probs=18.5
Q ss_pred CCCCchHHHHHHHHHhc---C--CcEeech
Q 029455 1 MMGSGKTTVGKILSGVL---G--YSFFDCD 25 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l---g--~~~~d~d 25 (193)
+|||||||+|..++... | ..|++++
T Consensus 82 ~pGsGKTtlal~la~~~~~~g~~vlyi~~E 111 (366)
T 1xp8_A 82 PESGGKTTLALAIVAQAQKAGGTCAFIDAE 111 (366)
T ss_dssp STTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCCCChHHHHHHHHHHHHHCCCeEEEEECC
Confidence 69999999999887643 2 4566654
No 365
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=87.58 E-value=0.25 Score=36.19 Aligned_cols=24 Identities=46% Similarity=0.605 Sum_probs=18.6
Q ss_pred CCCchHHHHHHHHHhc---CC--cEeech
Q 029455 2 MGSGKTTVGKILSGVL---GY--SFFDCD 25 (193)
Q Consensus 2 ~GsGKSTia~~La~~l---g~--~~~d~d 25 (193)
.|+||||++..||..+ |. -++|+|
T Consensus 11 gG~GKTt~a~~la~~la~~g~~vlliD~D 39 (206)
T 4dzz_A 11 GGSGKTTAVINIATALSRSGYNIAVVDTD 39 (206)
T ss_dssp TTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCccHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 5999999999888765 43 456776
No 366
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=87.56 E-value=0.23 Score=43.59 Aligned_cols=17 Identities=47% Similarity=0.532 Sum_probs=14.7
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
|+||||||+.+.|+-.+
T Consensus 111 pNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 111 TNGIGKSTALKILAGKQ 127 (608)
T ss_dssp CTTSSHHHHHHHHHTSS
T ss_pred CCCChHHHHHHHHhcCC
Confidence 68999999999998643
No 367
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=87.53 E-value=0.19 Score=43.40 Aligned_cols=17 Identities=47% Similarity=0.644 Sum_probs=14.6
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
++||||||+.+.|+-.+
T Consensus 302 ~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 302 PNGIGKTTFARILVGEI 318 (538)
T ss_dssp CTTSSHHHHHHHHTTSS
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 68999999999998643
No 368
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=87.41 E-value=0.28 Score=35.38 Aligned_cols=16 Identities=31% Similarity=0.310 Sum_probs=13.8
Q ss_pred CCCCchHHHHHHHHHh
Q 029455 1 MMGSGKTTVGKILSGV 16 (193)
Q Consensus 1 ~~GsGKSTia~~La~~ 16 (193)
++||||||+.+.|...
T Consensus 56 ~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 56 PQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CTTSSHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHhcC
Confidence 4799999999999763
No 369
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=87.35 E-value=0.25 Score=39.40 Aligned_cols=16 Identities=31% Similarity=0.316 Sum_probs=14.2
Q ss_pred CCCCchHHHHHHHHHh
Q 029455 1 MMGSGKTTVGKILSGV 16 (193)
Q Consensus 1 ~~GsGKSTia~~La~~ 16 (193)
+|||||||++..++..
T Consensus 106 ~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 106 VFGSGKTQIMHQSCVN 121 (322)
T ss_dssp STTSSHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH
Confidence 6999999999999864
No 370
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=87.25 E-value=0.25 Score=41.24 Aligned_cols=15 Identities=40% Similarity=0.561 Sum_probs=13.8
Q ss_pred CCCCchHHHHHHHHH
Q 029455 1 MMGSGKTTVGKILSG 15 (193)
Q Consensus 1 ~~GsGKSTia~~La~ 15 (193)
++||||||+.+.|+.
T Consensus 77 ~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 77 ETGSGKSSFINTLRG 91 (413)
T ss_dssp CTTSSHHHHHHHHHT
T ss_pred CCCCcHHHHHHHHhC
Confidence 689999999999986
No 371
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=87.24 E-value=0.28 Score=36.25 Aligned_cols=17 Identities=29% Similarity=0.251 Sum_probs=14.6
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
++||||||+...|....
T Consensus 20 ~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 20 PQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp STTSSHHHHHHHHHHSS
T ss_pred CCCCCHHHHHHHHhcCC
Confidence 58999999999998753
No 372
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=87.20 E-value=0.26 Score=34.48 Aligned_cols=14 Identities=29% Similarity=0.615 Sum_probs=12.3
Q ss_pred CCCCchHHHHHHHH
Q 029455 1 MMGSGKTTVGKILS 14 (193)
Q Consensus 1 ~~GsGKSTia~~La 14 (193)
.+|+||||+.+.|.
T Consensus 10 ~~~~GKSsli~~l~ 23 (166)
T 3q72_A 10 APGVGKSALARIFG 23 (166)
T ss_dssp STTSSHHHHHHHHC
T ss_pred CCCCCHHHHHHHHc
Confidence 48999999999884
No 373
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=87.19 E-value=0.25 Score=42.36 Aligned_cols=17 Identities=24% Similarity=0.214 Sum_probs=14.5
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
++||||||+++.|+..+
T Consensus 289 ~~GsGKSTLl~~l~g~~ 305 (525)
T 1tf7_A 289 ATGTGKTLLVSRFVENA 305 (525)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 68999999999998543
No 374
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=87.19 E-value=0.28 Score=34.42 Aligned_cols=15 Identities=33% Similarity=0.570 Sum_probs=13.0
Q ss_pred CCCCchHHHHHHHHH
Q 029455 1 MMGSGKTTVGKILSG 15 (193)
Q Consensus 1 ~~GsGKSTia~~La~ 15 (193)
++|+||||+.+.|..
T Consensus 10 ~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 10 ESGVGKSTLAGTFGG 24 (169)
T ss_dssp STTSSHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHh
Confidence 489999999999863
No 375
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=87.08 E-value=0.26 Score=42.58 Aligned_cols=17 Identities=53% Similarity=0.585 Sum_probs=14.7
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
+.||||||+.+.|+-.+
T Consensus 320 ~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 320 PNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp CTTSSHHHHHHHHHTSS
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 68999999999998644
No 376
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=87.01 E-value=0.18 Score=44.03 Aligned_cols=17 Identities=41% Similarity=0.460 Sum_probs=14.7
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
++||||||+.+.|+.-+
T Consensus 378 ~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 378 PSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp CTTSSSTHHHHHHTTSS
T ss_pred CCCCCHHHHHHHHhcCc
Confidence 68999999999997644
No 377
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=87.01 E-value=0.31 Score=34.12 Aligned_cols=16 Identities=19% Similarity=-0.072 Sum_probs=13.6
Q ss_pred CCCCchHHHHHHHHHh
Q 029455 1 MMGSGKTTVGKILSGV 16 (193)
Q Consensus 1 ~~GsGKSTia~~La~~ 16 (193)
.+|+||||+.+.|...
T Consensus 14 ~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 14 EGCVGKTSLVLRYCEN 29 (170)
T ss_dssp CTTSCHHHHHHHHHHC
T ss_pred cCCCCHHHHHHHHHcC
Confidence 4899999999999753
No 378
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=87.00 E-value=0.29 Score=34.44 Aligned_cols=15 Identities=33% Similarity=0.643 Sum_probs=13.1
Q ss_pred CCCCchHHHHHHHHH
Q 029455 1 MMGSGKTTVGKILSG 15 (193)
Q Consensus 1 ~~GsGKSTia~~La~ 15 (193)
.+|+||||+.+.|..
T Consensus 12 ~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 12 DPGVGKTSLASLFAG 26 (175)
T ss_dssp CTTSSHHHHHHHHHC
T ss_pred CCCccHHHHHHHHhc
Confidence 489999999999964
No 379
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=86.98 E-value=0.31 Score=34.03 Aligned_cols=15 Identities=13% Similarity=0.142 Sum_probs=13.1
Q ss_pred CCCCchHHHHHHHHH
Q 029455 1 MMGSGKTTVGKILSG 15 (193)
Q Consensus 1 ~~GsGKSTia~~La~ 15 (193)
++||||||+.+.|..
T Consensus 11 ~~~~GKssli~~l~~ 25 (170)
T 1ek0_A 11 EAAVGKSSIVLRFVS 25 (170)
T ss_dssp STTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHhc
Confidence 479999999999875
No 380
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=86.92 E-value=0.3 Score=34.17 Aligned_cols=15 Identities=20% Similarity=0.182 Sum_probs=13.2
Q ss_pred CCCCchHHHHHHHHH
Q 029455 1 MMGSGKTTVGKILSG 15 (193)
Q Consensus 1 ~~GsGKSTia~~La~ 15 (193)
.+|+||||+.+.|..
T Consensus 11 ~~~~GKssli~~l~~ 25 (172)
T 2erx_A 11 AGGVGKSSLVLRFVK 25 (172)
T ss_dssp CTTSSHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHc
Confidence 489999999999975
No 381
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=86.90 E-value=0.28 Score=39.20 Aligned_cols=17 Identities=18% Similarity=0.065 Sum_probs=14.4
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
+||+||||++..++...
T Consensus 76 ~pG~GKTtl~l~ia~~~ 92 (315)
T 3bh0_A 76 RPSMGKTAFALKQAKNM 92 (315)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 59999999999998643
No 382
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=86.86 E-value=0.32 Score=33.98 Aligned_cols=16 Identities=19% Similarity=0.123 Sum_probs=13.7
Q ss_pred CCCCchHHHHHHHHHh
Q 029455 1 MMGSGKTTVGKILSGV 16 (193)
Q Consensus 1 ~~GsGKSTia~~La~~ 16 (193)
++|+||||+.+.|...
T Consensus 14 ~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 14 DTGVGKSSIMWRFVED 29 (170)
T ss_dssp CTTSSHHHHHHHHHHS
T ss_pred cCCCCHHHHHHHHHcC
Confidence 4899999999999753
No 383
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=86.86 E-value=0.32 Score=34.43 Aligned_cols=15 Identities=27% Similarity=0.244 Sum_probs=13.2
Q ss_pred CCCCchHHHHHHHHH
Q 029455 1 MMGSGKTTVGKILSG 15 (193)
Q Consensus 1 ~~GsGKSTia~~La~ 15 (193)
++||||||+.+.|..
T Consensus 16 ~~~~GKSsli~~l~~ 30 (182)
T 1ky3_A 16 DSGVGKTSLMHRYVN 30 (182)
T ss_dssp CTTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHh
Confidence 489999999999875
No 384
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=86.84 E-value=0.28 Score=42.09 Aligned_cols=26 Identities=38% Similarity=0.510 Sum_probs=19.3
Q ss_pred CCCCchHHHHHHHHHhc---CC--cEeechH
Q 029455 1 MMGSGKTTVGKILSGVL---GY--SFFDCDT 26 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l---g~--~~~d~d~ 26 (193)
++||||||++..|+..+ |. -+++.|.
T Consensus 109 ~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~ 139 (504)
T 2j37_W 109 LQGSGKTTTCSKLAYYYQRKGWKTCLICADT 139 (504)
T ss_dssp STTSSHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCCCCHHHHHHHHHHHHHhCCCeEEEEeccc
Confidence 48999999999999654 44 3456653
No 385
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=86.81 E-value=0.32 Score=34.01 Aligned_cols=15 Identities=20% Similarity=0.124 Sum_probs=13.2
Q ss_pred CCCCchHHHHHHHHH
Q 029455 1 MMGSGKTTVGKILSG 15 (193)
Q Consensus 1 ~~GsGKSTia~~La~ 15 (193)
++|+||||+.+.|..
T Consensus 11 ~~~~GKssli~~l~~ 25 (170)
T 1g16_A 11 DSGVGKSCLLVRFVE 25 (170)
T ss_dssp STTSSHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHh
Confidence 489999999999974
No 386
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=86.81 E-value=0.29 Score=41.06 Aligned_cols=26 Identities=38% Similarity=0.452 Sum_probs=19.2
Q ss_pred CCCCchHHHHHHHHHhc---CC--cEeechH
Q 029455 1 MMGSGKTTVGKILSGVL---GY--SFFDCDT 26 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l---g~--~~~d~d~ 26 (193)
++||||||++..||..+ |. .+++.|.
T Consensus 106 ~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~ 136 (425)
T 2ffh_A 106 LQGSGKTTTAAKLALYYKGKGRRPLLVAADT 136 (425)
T ss_dssp CTTSSHHHHHHHHHHHHHTTTCCEEEEECCS
T ss_pred CCCCCHHHHHHHHHHHHHHcCCeEEEeeccc
Confidence 57999999999998765 32 3456653
No 387
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=86.79 E-value=0.32 Score=34.34 Aligned_cols=15 Identities=20% Similarity=0.146 Sum_probs=13.2
Q ss_pred CCCCchHHHHHHHHH
Q 029455 1 MMGSGKTTVGKILSG 15 (193)
Q Consensus 1 ~~GsGKSTia~~La~ 15 (193)
++||||||+.+.|..
T Consensus 15 ~~~~GKSsli~~l~~ 29 (177)
T 1wms_A 15 DGGVGKSSLMNRYVT 29 (177)
T ss_dssp CTTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHc
Confidence 489999999999975
No 388
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=86.77 E-value=0.32 Score=33.88 Aligned_cols=15 Identities=20% Similarity=0.217 Sum_probs=13.2
Q ss_pred CCCCchHHHHHHHHH
Q 029455 1 MMGSGKTTVGKILSG 15 (193)
Q Consensus 1 ~~GsGKSTia~~La~ 15 (193)
.+||||||+.+.|..
T Consensus 11 ~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 11 SGGVGKSALTVQFVQ 25 (167)
T ss_dssp STTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHc
Confidence 479999999999975
No 389
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=86.73 E-value=0.2 Score=43.79 Aligned_cols=17 Identities=41% Similarity=0.505 Sum_probs=14.7
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
|+||||||+.+.|+..+
T Consensus 389 ~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 389 PTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp CTTSSTTHHHHHHTTSS
T ss_pred CCCCcHHHHHHHHhcCc
Confidence 68999999999997644
No 390
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=86.73 E-value=0.33 Score=37.98 Aligned_cols=25 Identities=36% Similarity=0.493 Sum_probs=19.4
Q ss_pred CCCchHHHHHHHHHhc---CC--cEeechH
Q 029455 2 MGSGKTTVGKILSGVL---GY--SFFDCDT 26 (193)
Q Consensus 2 ~GsGKSTia~~La~~l---g~--~~~d~d~ 26 (193)
.|+||||++..||..| |. -++|+|.
T Consensus 14 GGvGKTT~a~nLA~~La~~G~~VlliD~D~ 43 (286)
T 2xj4_A 14 GGAGKSTIAVHLVTALLYGGAKVAVIDLDL 43 (286)
T ss_dssp SCTTHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred CCCCHHHHHHHHHHHHHHCCCcEEEEECCC
Confidence 5999999999998766 44 4567775
No 391
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=86.65 E-value=0.34 Score=34.24 Aligned_cols=15 Identities=27% Similarity=0.264 Sum_probs=13.2
Q ss_pred CCCCchHHHHHHHHH
Q 029455 1 MMGSGKTTVGKILSG 15 (193)
Q Consensus 1 ~~GsGKSTia~~La~ 15 (193)
.+||||||+.+.|..
T Consensus 14 ~~~~GKssl~~~l~~ 28 (178)
T 2hxs_A 14 DGASGKTSLTTCFAQ 28 (178)
T ss_dssp CTTSSHHHHHHHHHG
T ss_pred cCCCCHHHHHHHHHh
Confidence 489999999999975
No 392
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=86.65 E-value=0.32 Score=34.39 Aligned_cols=17 Identities=29% Similarity=0.268 Sum_probs=13.5
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
|.||||||+...|.=.+
T Consensus 31 ~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 31 QNGSGKSSLLDAILVGL 47 (149)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 57999999999886433
No 393
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=86.63 E-value=0.23 Score=43.56 Aligned_cols=17 Identities=59% Similarity=0.716 Sum_probs=14.4
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
++||||||+.+.|+-.+
T Consensus 125 ~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 125 PNGTGKTTAVKILAGQL 141 (607)
T ss_dssp CTTSSHHHHHHHHTTSS
T ss_pred CCCChHHHHHHHHhCCC
Confidence 68999999999997543
No 394
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=86.49 E-value=0.31 Score=36.34 Aligned_cols=21 Identities=29% Similarity=0.260 Sum_probs=16.2
Q ss_pred CCCchHHHHHHHHHhc---CCcEe
Q 029455 2 MGSGKTTVGKILSGVL---GYSFF 22 (193)
Q Consensus 2 ~GsGKSTia~~La~~l---g~~~~ 22 (193)
+|+||||++--||..| |..++
T Consensus 11 gGvGKTt~a~nLa~~la~~G~rVl 34 (224)
T 1byi_A 11 TEVGKTVASCALLQAAKAAGYRTA 34 (224)
T ss_dssp TTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEE
Confidence 6999999999888655 55443
No 395
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=86.45 E-value=0.29 Score=42.95 Aligned_cols=17 Identities=53% Similarity=0.585 Sum_probs=14.7
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
|.||||||+.+.|+-.+
T Consensus 390 ~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 390 PNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp CTTSSHHHHHHHHHTSS
T ss_pred CCCCCHHHHHHHHhcCC
Confidence 68999999999998643
No 396
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=86.40 E-value=0.36 Score=37.20 Aligned_cols=25 Identities=36% Similarity=0.477 Sum_probs=18.9
Q ss_pred CCCchHHHHHHHHHhc---CCc--EeechH
Q 029455 2 MGSGKTTVGKILSGVL---GYS--FFDCDT 26 (193)
Q Consensus 2 ~GsGKSTia~~La~~l---g~~--~~d~d~ 26 (193)
.|+||||++..||..| |.. ++|+|.
T Consensus 28 GGvGKTT~a~nLA~~la~~G~~VlliD~D~ 57 (262)
T 2ph1_A 28 GGVGKSTVTALLAVHYARQGKKVGILDADF 57 (262)
T ss_dssp SCTTHHHHHHHHHHHHHHTTCCEEEEECCS
T ss_pred CCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 5999999999888765 544 567764
No 397
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=86.40 E-value=0.11 Score=41.61 Aligned_cols=15 Identities=27% Similarity=0.375 Sum_probs=13.1
Q ss_pred CCCCchHHHHHHHHH
Q 029455 1 MMGSGKTTVGKILSG 15 (193)
Q Consensus 1 ~~GsGKSTia~~La~ 15 (193)
+|||||||+.+.|+.
T Consensus 181 ~sG~GKSTLln~L~g 195 (307)
T 1t9h_A 181 QSGVGKSSLLNAISP 195 (307)
T ss_dssp SHHHHHHHHHHHHCC
T ss_pred CCCCCHHHHHHHhcc
Confidence 589999999999853
No 398
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=86.39 E-value=0.27 Score=37.02 Aligned_cols=25 Identities=36% Similarity=0.288 Sum_probs=19.4
Q ss_pred CCCchHHHHHHHHHhc---CCc--EeechH
Q 029455 2 MGSGKTTVGKILSGVL---GYS--FFDCDT 26 (193)
Q Consensus 2 ~GsGKSTia~~La~~l---g~~--~~d~d~ 26 (193)
.|+||||++..||..| |.+ ++|+|.
T Consensus 9 GGvGKTt~a~~LA~~la~~g~~VlliD~D~ 38 (254)
T 3kjh_A 9 GGVGKTTVAAGLIKIMASDYDKIYAVDGDP 38 (254)
T ss_dssp SSHHHHHHHHHHHHHHTTTCSCEEEEEECT
T ss_pred CCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 6999999999999877 444 466664
No 399
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=86.37 E-value=0.34 Score=34.83 Aligned_cols=16 Identities=25% Similarity=0.189 Sum_probs=13.7
Q ss_pred CCCCchHHHHHHHHHh
Q 029455 1 MMGSGKTTVGKILSGV 16 (193)
Q Consensus 1 ~~GsGKSTia~~La~~ 16 (193)
.+||||||+.+.|...
T Consensus 29 ~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 29 AGGVGKSALTIQLIQN 44 (190)
T ss_dssp STTSSHHHHHHHHHHS
T ss_pred cCCCCHHHHHHHHHcC
Confidence 4799999999999753
No 400
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=86.22 E-value=0.36 Score=34.10 Aligned_cols=16 Identities=19% Similarity=0.115 Sum_probs=13.8
Q ss_pred CCCCchHHHHHHHHHh
Q 029455 1 MMGSGKTTVGKILSGV 16 (193)
Q Consensus 1 ~~GsGKSTia~~La~~ 16 (193)
.+||||||+.+.|...
T Consensus 17 ~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 17 GGGVGKSALTIQFIQS 32 (181)
T ss_dssp CTTSSHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHhC
Confidence 4799999999999764
No 401
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=86.19 E-value=0.36 Score=33.67 Aligned_cols=15 Identities=13% Similarity=0.065 Sum_probs=13.2
Q ss_pred CCCCchHHHHHHHHH
Q 029455 1 MMGSGKTTVGKILSG 15 (193)
Q Consensus 1 ~~GsGKSTia~~La~ 15 (193)
.+|+||||+.+.|..
T Consensus 14 ~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 14 ESAVGKSSLVLRFVK 28 (170)
T ss_dssp STTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHc
Confidence 479999999999975
No 402
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=86.11 E-value=0.31 Score=42.79 Aligned_cols=17 Identities=53% Similarity=0.741 Sum_probs=14.6
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
++||||||+.+.|+-.+
T Consensus 386 ~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 386 ENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp CTTSSHHHHHHHHHTSS
T ss_pred CCCCcHHHHHHHHhcCC
Confidence 68999999999998643
No 403
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=86.03 E-value=0.36 Score=34.63 Aligned_cols=16 Identities=19% Similarity=0.164 Sum_probs=13.8
Q ss_pred CCCCchHHHHHHHHHh
Q 029455 1 MMGSGKTTVGKILSGV 16 (193)
Q Consensus 1 ~~GsGKSTia~~La~~ 16 (193)
++|+||||+.+.|...
T Consensus 15 ~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 15 DSQCGKTALLHVFAKD 30 (184)
T ss_dssp STTSSHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHhcC
Confidence 4899999999999763
No 404
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=85.98 E-value=0.32 Score=42.75 Aligned_cols=15 Identities=33% Similarity=0.157 Sum_probs=10.9
Q ss_pred CCCCchHHHHHHHHH
Q 029455 1 MMGSGKTTVGKILSG 15 (193)
Q Consensus 1 ~~GsGKSTia~~La~ 15 (193)
|||||||++...+..
T Consensus 213 PPGTGKT~ti~~~I~ 227 (646)
T 4b3f_X 213 PPGTGKTTTVVEIIL 227 (646)
T ss_dssp CTTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 899999976554433
No 405
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=85.92 E-value=0.34 Score=40.74 Aligned_cols=16 Identities=19% Similarity=0.098 Sum_probs=13.9
Q ss_pred CCCCchHHHHHHHHHh
Q 029455 1 MMGSGKTTVGKILSGV 16 (193)
Q Consensus 1 ~~GsGKSTia~~La~~ 16 (193)
+||+||||++..++..
T Consensus 211 ~pG~GKTtl~l~ia~~ 226 (454)
T 2r6a_A 211 RPSVGKTAFALNIAQN 226 (454)
T ss_dssp CTTSCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH
Confidence 5999999999998764
No 406
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=85.82 E-value=0.28 Score=38.96 Aligned_cols=15 Identities=33% Similarity=0.180 Sum_probs=13.0
Q ss_pred CCCCchHHHHHHHHH
Q 029455 1 MMGSGKTTVGKILSG 15 (193)
Q Consensus 1 ~~GsGKSTia~~La~ 15 (193)
++|+||||+.+.|..
T Consensus 26 ~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 26 ESGLGKSTLINSLFL 40 (301)
T ss_dssp ETTSSHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHhC
Confidence 489999999999863
No 407
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=85.80 E-value=0.38 Score=33.90 Aligned_cols=16 Identities=25% Similarity=0.310 Sum_probs=13.7
Q ss_pred CCCCchHHHHHHHHHh
Q 029455 1 MMGSGKTTVGKILSGV 16 (193)
Q Consensus 1 ~~GsGKSTia~~La~~ 16 (193)
.+||||||+.+.|...
T Consensus 23 ~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 23 DMGVGKSCLLHQFTEK 38 (179)
T ss_dssp STTSSHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHcC
Confidence 4799999999999753
No 408
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=85.77 E-value=0.34 Score=34.22 Aligned_cols=15 Identities=20% Similarity=0.226 Sum_probs=12.8
Q ss_pred CCCCchHHHHHHHHH
Q 029455 1 MMGSGKTTVGKILSG 15 (193)
Q Consensus 1 ~~GsGKSTia~~La~ 15 (193)
.+||||||+.+.|..
T Consensus 17 ~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 17 DSGVGKSSLLLRFAD 31 (181)
T ss_dssp CTTSCHHHHHHHHCS
T ss_pred CCCCCHHHHHHHHhc
Confidence 489999999998853
No 409
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=85.76 E-value=0.35 Score=39.14 Aligned_cols=16 Identities=19% Similarity=0.054 Sum_probs=13.1
Q ss_pred CCCCchHHHHHHHHHh
Q 029455 1 MMGSGKTTVGKILSGV 16 (193)
Q Consensus 1 ~~GsGKSTia~~La~~ 16 (193)
+|||||||++-.++..
T Consensus 36 ~pGsGKTtL~Lq~~~~ 51 (333)
T 3io5_A 36 PSKSFKSNFGLTMVSS 51 (333)
T ss_dssp SSSSSHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH
Confidence 6999999998777543
No 410
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=85.75 E-value=0.39 Score=34.23 Aligned_cols=16 Identities=25% Similarity=0.200 Sum_probs=13.7
Q ss_pred CCCCchHHHHHHHHHh
Q 029455 1 MMGSGKTTVGKILSGV 16 (193)
Q Consensus 1 ~~GsGKSTia~~La~~ 16 (193)
++|+||||+.+.|...
T Consensus 12 ~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 12 ADGVGKSALTIQLIQN 27 (189)
T ss_dssp CTTSSHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHhC
Confidence 4899999999999753
No 411
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=85.72 E-value=0.36 Score=39.60 Aligned_cols=17 Identities=29% Similarity=0.235 Sum_probs=14.5
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
++||||||+.+.|...+
T Consensus 43 ~~G~GKs~~~~~~~~~~ 59 (392)
T 4ag6_A 43 KPGAGKSFTAKMLLLRE 59 (392)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 68999999999987653
No 412
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=85.65 E-value=0.39 Score=34.87 Aligned_cols=15 Identities=33% Similarity=0.470 Sum_probs=13.4
Q ss_pred CCCCchHHHHHHHHH
Q 029455 1 MMGSGKTTVGKILSG 15 (193)
Q Consensus 1 ~~GsGKSTia~~La~ 15 (193)
++|+||||+.++|..
T Consensus 31 ~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 31 LDNAGKTTLLHMLKN 45 (190)
T ss_dssp STTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHhc
Confidence 489999999999975
No 413
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=85.61 E-value=0.37 Score=35.95 Aligned_cols=25 Identities=44% Similarity=0.484 Sum_probs=18.7
Q ss_pred CCCchHHHHHHHHHhc---C-CcEeechH
Q 029455 2 MGSGKTTVGKILSGVL---G-YSFFDCDT 26 (193)
Q Consensus 2 ~GsGKSTia~~La~~l---g-~~~~d~d~ 26 (193)
.|+||||++..||..| | .-++|+|.
T Consensus 10 GGvGKTT~a~~LA~~la~~g~VlliD~D~ 38 (209)
T 3cwq_A 10 GGVGKTTTAVHLSAYLALQGETLLIDGDP 38 (209)
T ss_dssp TTSSHHHHHHHHHHHHHTTSCEEEEEECT
T ss_pred CCCcHHHHHHHHHHHHHhcCCEEEEECCC
Confidence 5999999999998766 4 23566664
No 414
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=85.55 E-value=0.4 Score=34.28 Aligned_cols=15 Identities=33% Similarity=0.260 Sum_probs=13.3
Q ss_pred CCCCchHHHHHHHHH
Q 029455 1 MMGSGKTTVGKILSG 15 (193)
Q Consensus 1 ~~GsGKSTia~~La~ 15 (193)
.+|+||||+.+.|..
T Consensus 19 ~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 19 DSGVGKTSVLYQYTD 33 (195)
T ss_dssp STTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHhc
Confidence 479999999999975
No 415
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=85.51 E-value=0.36 Score=40.53 Aligned_cols=26 Identities=31% Similarity=0.319 Sum_probs=19.3
Q ss_pred CCCCchHHHHHHHHHhc----CC--cEeechH
Q 029455 1 MMGSGKTTVGKILSGVL----GY--SFFDCDT 26 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l----g~--~~~d~d~ 26 (193)
++||||||++..||..+ |. -++|+|.
T Consensus 108 ~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~ 139 (433)
T 2xxa_A 108 LQGAGKTTSVGKLGKFLREKHKKKVLVVSADV 139 (433)
T ss_dssp STTSSHHHHHHHHHHHHHHTSCCCEEEEECCC
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCeEEEEecCC
Confidence 47999999999998654 54 3567774
No 416
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=85.47 E-value=0.37 Score=34.04 Aligned_cols=15 Identities=27% Similarity=0.297 Sum_probs=13.1
Q ss_pred CCCCchHHHHHHHHH
Q 029455 1 MMGSGKTTVGKILSG 15 (193)
Q Consensus 1 ~~GsGKSTia~~La~ 15 (193)
.+||||||+.+.|..
T Consensus 16 ~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 16 HVDHGKTTLLDAIRH 30 (178)
T ss_dssp CTTTTHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHhC
Confidence 489999999999964
No 417
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=85.46 E-value=0.34 Score=42.41 Aligned_cols=16 Identities=50% Similarity=0.563 Sum_probs=14.0
Q ss_pred CCCCchHHHHHHHHHh
Q 029455 1 MMGSGKTTVGKILSGV 16 (193)
Q Consensus 1 ~~GsGKSTia~~La~~ 16 (193)
++||||||+.+.|+..
T Consensus 53 ~nGsGKSTLL~~I~Gl 68 (608)
T 3szr_A 53 DQSSGKSSVLEALSGV 68 (608)
T ss_dssp CTTSCHHHHHHHHHSC
T ss_pred CCCChHHHHHHHHhCC
Confidence 5899999999999753
No 418
>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}
Probab=85.46 E-value=2.2 Score=38.12 Aligned_cols=17 Identities=18% Similarity=0.192 Sum_probs=13.8
Q ss_pred CCCchHHHHHHHHHhcC
Q 029455 2 MGSGKTTVGKILSGVLG 18 (193)
Q Consensus 2 ~GsGKSTia~~La~~lg 18 (193)
+|-||+|+.+.|.+.+.
T Consensus 537 ~GP~K~tl~~~L~~~~~ 553 (721)
T 2xkx_A 537 LGPTKDRANDDLLSEFP 553 (721)
T ss_pred ECCCHHHHHHHHHHhCc
Confidence 46789999999988663
No 419
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=85.45 E-value=0.43 Score=37.25 Aligned_cols=25 Identities=36% Similarity=0.555 Sum_probs=19.2
Q ss_pred CCCchHHHHHHHHHhc---CC--cEeechH
Q 029455 2 MGSGKTTVGKILSGVL---GY--SFFDCDT 26 (193)
Q Consensus 2 ~GsGKSTia~~La~~l---g~--~~~d~d~ 26 (193)
+|+||||++.-||..+ |. -++|+|.
T Consensus 92 gG~GKTt~a~nLA~~lA~~G~rVLLID~D~ 121 (271)
T 3bfv_A 92 PGAGKSTIAANLAVAYAQAGYKTLIVDGDM 121 (271)
T ss_dssp TTSSHHHHHHHHHHHHHHTTCCEEEEECCS
T ss_pred CCCcHHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 7999999999888765 54 4567773
No 420
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=85.44 E-value=0.38 Score=49.02 Aligned_cols=22 Identities=32% Similarity=0.357 Sum_probs=19.6
Q ss_pred CCCCchHHHHHHHHHhcCCcEe
Q 029455 1 MMGSGKTTVGKILSGVLGYSFF 22 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~~~ 22 (193)
|+|+|||++++.||+.+|.+++
T Consensus 653 paGtGKTe~vk~LA~~lg~~~v 674 (2695)
T 4akg_A 653 PAGTGKTETVKAFGQNLGRVVV 674 (2695)
T ss_dssp CTTSCHHHHHHHHHHTTTCCCE
T ss_pred CCCCCcHHHHHHHHHHhCCcEE
Confidence 7999999999999999996543
No 421
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=85.43 E-value=0.36 Score=37.40 Aligned_cols=16 Identities=38% Similarity=0.447 Sum_probs=13.8
Q ss_pred CCCCchHHHHHHHHHh
Q 029455 1 MMGSGKTTVGKILSGV 16 (193)
Q Consensus 1 ~~GsGKSTia~~La~~ 16 (193)
+|||||||+.+.|...
T Consensus 11 ~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 11 NPNVGKTTIFNALTGL 26 (271)
T ss_dssp CSSSSHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHhCC
Confidence 5899999999999753
No 422
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=85.43 E-value=0.41 Score=34.34 Aligned_cols=17 Identities=35% Similarity=0.059 Sum_probs=13.8
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
.+|+||||+.+.|...+
T Consensus 22 ~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 22 PGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp STTSSHHHHHHHHHHTS
T ss_pred CCCCCHHHHHHHHHhhc
Confidence 47999999998886543
No 423
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=85.37 E-value=0.39 Score=33.85 Aligned_cols=15 Identities=20% Similarity=0.042 Sum_probs=13.1
Q ss_pred CCCCchHHHHHHHHH
Q 029455 1 MMGSGKTTVGKILSG 15 (193)
Q Consensus 1 ~~GsGKSTia~~La~ 15 (193)
.+||||||+.+.|..
T Consensus 22 ~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 22 EQSVGKTSLITRFMY 36 (179)
T ss_dssp STTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHc
Confidence 479999999999974
No 424
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=85.36 E-value=0.44 Score=33.18 Aligned_cols=15 Identities=33% Similarity=0.233 Sum_probs=13.2
Q ss_pred CCCCchHHHHHHHHH
Q 029455 1 MMGSGKTTVGKILSG 15 (193)
Q Consensus 1 ~~GsGKSTia~~La~ 15 (193)
.+|+||||+.+.|..
T Consensus 8 ~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 8 LDAAGKTTILYKLKL 22 (164)
T ss_dssp STTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHc
Confidence 479999999999975
No 425
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=85.35 E-value=0.42 Score=33.47 Aligned_cols=15 Identities=40% Similarity=0.388 Sum_probs=13.1
Q ss_pred CCCCchHHHHHHHHH
Q 029455 1 MMGSGKTTVGKILSG 15 (193)
Q Consensus 1 ~~GsGKSTia~~La~ 15 (193)
.+|+||||+.+.|..
T Consensus 15 ~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 15 LDGAGKTTILYRLQV 29 (171)
T ss_dssp STTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHhc
Confidence 479999999999964
No 426
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=85.32 E-value=0.42 Score=34.35 Aligned_cols=16 Identities=19% Similarity=0.119 Sum_probs=13.9
Q ss_pred CCCCchHHHHHHHHHh
Q 029455 1 MMGSGKTTVGKILSGV 16 (193)
Q Consensus 1 ~~GsGKSTia~~La~~ 16 (193)
.+|+||||+.+.|...
T Consensus 15 ~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 15 ESSVGKSSIVLRLTKD 30 (208)
T ss_dssp CTTSSHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHhC
Confidence 4799999999999764
No 427
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=85.22 E-value=0.43 Score=37.81 Aligned_cols=25 Identities=40% Similarity=0.507 Sum_probs=19.0
Q ss_pred CCCchHHHHHHHHHhc---CC--cEeechH
Q 029455 2 MGSGKTTVGKILSGVL---GY--SFFDCDT 26 (193)
Q Consensus 2 ~GsGKSTia~~La~~l---g~--~~~d~d~ 26 (193)
+|+||||++.-||..+ |. -++|+|.
T Consensus 114 gG~GKTtva~nLA~~lA~~G~rVLLID~D~ 143 (299)
T 3cio_A 114 PDSGKTFVSSTLAAVIAQSDQKVLFIDADL 143 (299)
T ss_dssp SSSCHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred CCCChHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 7999999998888765 54 3567774
No 428
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=85.22 E-value=0.37 Score=41.43 Aligned_cols=15 Identities=27% Similarity=0.370 Sum_probs=13.8
Q ss_pred CCCCchHHHHHHHHH
Q 029455 1 MMGSGKTTVGKILSG 15 (193)
Q Consensus 1 ~~GsGKSTia~~La~ 15 (193)
|+|+||||+|+.++.
T Consensus 160 ~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 160 RAGSGKSVIASQALS 174 (549)
T ss_dssp STTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 689999999999995
No 429
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=85.22 E-value=0.36 Score=34.79 Aligned_cols=15 Identities=20% Similarity=0.142 Sum_probs=13.1
Q ss_pred CCCCchHHHHHHHHH
Q 029455 1 MMGSGKTTVGKILSG 15 (193)
Q Consensus 1 ~~GsGKSTia~~La~ 15 (193)
.+||||||+.+.|..
T Consensus 31 ~~~~GKSsli~~l~~ 45 (195)
T 1svi_A 31 RSNVGKSSFINSLIN 45 (195)
T ss_dssp BTTSSHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHhC
Confidence 479999999999975
No 430
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=85.17 E-value=0.35 Score=39.62 Aligned_cols=14 Identities=36% Similarity=0.254 Sum_probs=12.2
Q ss_pred CCCCchHHHHHHHH
Q 029455 1 MMGSGKTTVGKILS 14 (193)
Q Consensus 1 ~~GsGKSTia~~La 14 (193)
.+||||||+++.+.
T Consensus 41 ~~~SGKST~~kq~~ 54 (362)
T 1zcb_A 41 AGESGKSTFLKQMR 54 (362)
T ss_dssp STTSSHHHHHHHHH
T ss_pred CCCCcHHHHHHHHH
Confidence 37999999999984
No 431
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=85.14 E-value=0.43 Score=34.05 Aligned_cols=15 Identities=20% Similarity=0.257 Sum_probs=13.2
Q ss_pred CCCCchHHHHHHHHH
Q 029455 1 MMGSGKTTVGKILSG 15 (193)
Q Consensus 1 ~~GsGKSTia~~La~ 15 (193)
++||||||+.+.|..
T Consensus 18 ~~~~GKSsli~~l~~ 32 (186)
T 2bme_A 18 NAGTGKSCLLHQFIE 32 (186)
T ss_dssp STTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHc
Confidence 479999999999975
No 432
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=85.14 E-value=0.17 Score=44.01 Aligned_cols=17 Identities=29% Similarity=0.528 Sum_probs=14.4
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
|+||||||+.+.|+..+
T Consensus 375 ~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 375 MSGGGKSTLINLIPRFY 391 (578)
T ss_dssp STTSSHHHHHTTTTTSS
T ss_pred CCCChHHHHHHHHhcCC
Confidence 68999999999987544
No 433
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=85.07 E-value=0.43 Score=33.87 Aligned_cols=15 Identities=20% Similarity=0.133 Sum_probs=13.3
Q ss_pred CCCCchHHHHHHHHH
Q 029455 1 MMGSGKTTVGKILSG 15 (193)
Q Consensus 1 ~~GsGKSTia~~La~ 15 (193)
.+||||||+.+.|..
T Consensus 26 ~~~~GKSsli~~l~~ 40 (187)
T 2a9k_A 26 SGGVGKSALTLQFMY 40 (187)
T ss_dssp STTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHhh
Confidence 479999999999975
No 434
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=85.05 E-value=0.32 Score=41.89 Aligned_cols=15 Identities=27% Similarity=0.392 Sum_probs=13.3
Q ss_pred CCCCchHHHHHHHHH
Q 029455 1 MMGSGKTTVGKILSG 15 (193)
Q Consensus 1 ~~GsGKSTia~~La~ 15 (193)
|+|+||||+++.++.
T Consensus 155 ~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 155 MAGCGKSVLAAEAVR 169 (591)
T ss_dssp CTTSSHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHh
Confidence 689999999999864
No 435
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=84.95 E-value=0.21 Score=43.58 Aligned_cols=17 Identities=29% Similarity=0.563 Sum_probs=14.7
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
|+||||||+.+.|+..+
T Consensus 377 ~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 377 ETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp SSSSSHHHHHHTTTTSS
T ss_pred CCCCCHHHHHHHHhCCc
Confidence 68999999999997654
No 436
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=84.90 E-value=0.46 Score=33.67 Aligned_cols=15 Identities=20% Similarity=0.290 Sum_probs=13.1
Q ss_pred CCCCchHHHHHHHHH
Q 029455 1 MMGSGKTTVGKILSG 15 (193)
Q Consensus 1 ~~GsGKSTia~~La~ 15 (193)
.+|+||||+.+.|..
T Consensus 20 ~~~~GKSsli~~l~~ 34 (181)
T 2efe_B 20 DVGAGKSSLVLRFVK 34 (181)
T ss_dssp CTTSCHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHc
Confidence 479999999999875
No 437
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=84.87 E-value=0.39 Score=34.36 Aligned_cols=15 Identities=33% Similarity=0.335 Sum_probs=13.2
Q ss_pred CCCCchHHHHHHHHH
Q 029455 1 MMGSGKTTVGKILSG 15 (193)
Q Consensus 1 ~~GsGKSTia~~La~ 15 (193)
.+|+||||+.+.|..
T Consensus 9 ~~~~GKSsli~~l~~ 23 (190)
T 2cxx_A 9 RSNVGKSTLIYRLTG 23 (190)
T ss_dssp BTTSSHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHhC
Confidence 479999999999975
No 438
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=84.84 E-value=0.43 Score=33.98 Aligned_cols=16 Identities=19% Similarity=0.090 Sum_probs=13.7
Q ss_pred CCCCchHHHHHHHHHh
Q 029455 1 MMGSGKTTVGKILSGV 16 (193)
Q Consensus 1 ~~GsGKSTia~~La~~ 16 (193)
.+|+||||+.+.|...
T Consensus 26 ~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 26 DGGVGKSALTIQFFQK 41 (183)
T ss_dssp STTSSHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHhC
Confidence 4799999999999753
No 439
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=84.84 E-value=0.42 Score=36.15 Aligned_cols=15 Identities=33% Similarity=0.678 Sum_probs=13.3
Q ss_pred CCCCchHHHHHHHHH
Q 029455 1 MMGSGKTTVGKILSG 15 (193)
Q Consensus 1 ~~GsGKSTia~~La~ 15 (193)
.+|+||||+.+.|..
T Consensus 37 ~~g~GKStlin~l~g 51 (239)
T 3lxx_A 37 KTGAGKSATGNSILG 51 (239)
T ss_dssp CTTSSHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHcC
Confidence 489999999999975
No 440
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=84.80 E-value=0.4 Score=42.05 Aligned_cols=17 Identities=29% Similarity=0.292 Sum_probs=13.4
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
||||||||+...+...+
T Consensus 203 ppGTGKT~~~~~~i~~l 219 (624)
T 2gk6_A 203 PPGTGKTVTSATIVYHL 219 (624)
T ss_dssp CTTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 79999999877765543
No 441
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=84.77 E-value=0.6 Score=35.55 Aligned_cols=20 Identities=35% Similarity=0.300 Sum_probs=16.8
Q ss_pred CCCCchHHHHHHHHHhcCCc
Q 029455 1 MMGSGKTTVGKILSGVLGYS 20 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~~ 20 (193)
++|+|||.++..++..++.+
T Consensus 116 ~tG~GKT~~a~~~~~~~~~~ 135 (237)
T 2fz4_A 116 PTGSGKTHVAMAAINELSTP 135 (237)
T ss_dssp SSSTTHHHHHHHHHHHSCSC
T ss_pred CCCCCHHHHHHHHHHHcCCC
Confidence 68999999999998877643
No 442
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=84.72 E-value=0.46 Score=33.61 Aligned_cols=15 Identities=27% Similarity=0.191 Sum_probs=13.2
Q ss_pred CCCCchHHHHHHHHH
Q 029455 1 MMGSGKTTVGKILSG 15 (193)
Q Consensus 1 ~~GsGKSTia~~La~ 15 (193)
.+|+||||+.+.|..
T Consensus 18 ~~~~GKssli~~l~~ 32 (180)
T 2g6b_A 18 DSGVGKTCLLVRFKD 32 (180)
T ss_dssp STTSSHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHh
Confidence 479999999999975
No 443
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=84.62 E-value=0.37 Score=34.54 Aligned_cols=16 Identities=19% Similarity=0.129 Sum_probs=13.6
Q ss_pred CCCCchHHHHHHHHHh
Q 029455 1 MMGSGKTTVGKILSGV 16 (193)
Q Consensus 1 ~~GsGKSTia~~La~~ 16 (193)
.+||||||+.+.|...
T Consensus 31 ~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 31 RSNVGKSSLLNALFNR 46 (195)
T ss_dssp BTTSSHHHHHHHHHTS
T ss_pred CCCCCHHHHHHHHHcC
Confidence 4799999999999754
No 444
>3rhf_A Putative polyphosphate kinase 2 family protein; PSI-biology, MCSG, structural genomics, midwest center for S genomics; HET: PGE FLC PG4; 2.45A {Arthrobacter aurescens}
Probab=84.50 E-value=6.2 Score=31.18 Aligned_cols=20 Identities=20% Similarity=0.303 Sum_probs=17.6
Q ss_pred eEEEEECCHHHHHHHHhccC
Q 029455 88 ISVWLDVPLEALAQRIAAVG 107 (193)
Q Consensus 88 ~vV~L~~~~~~~~~Rl~~~~ 107 (193)
+.+||..|.+++.+|+.++.
T Consensus 182 lKf~LhIskeEQ~kR~~~R~ 201 (289)
T 3rhf_A 182 VKVMLNISKDEQKKRLIARL 201 (289)
T ss_dssp EEEEEECCHHHHHHHHHHHH
T ss_pred EEEEEECCHHHHHHHHHHHh
Confidence 47999999999999998753
No 445
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=84.50 E-value=0.47 Score=34.20 Aligned_cols=15 Identities=27% Similarity=0.282 Sum_probs=13.3
Q ss_pred CCCCchHHHHHHHHH
Q 029455 1 MMGSGKTTVGKILSG 15 (193)
Q Consensus 1 ~~GsGKSTia~~La~ 15 (193)
.+|+||||+.+.|..
T Consensus 33 ~~~~GKSsLi~~l~~ 47 (193)
T 2oil_A 33 ESGVGKTNLLSRFTR 47 (193)
T ss_dssp STTSSHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHhc
Confidence 479999999999975
No 446
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=84.29 E-value=0.49 Score=33.60 Aligned_cols=15 Identities=20% Similarity=-0.026 Sum_probs=13.1
Q ss_pred CCCCchHHHHHHHHH
Q 029455 1 MMGSGKTTVGKILSG 15 (193)
Q Consensus 1 ~~GsGKSTia~~La~ 15 (193)
.+|+||||+.+.|..
T Consensus 13 ~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 13 DGAVGKTCLLISYTT 27 (186)
T ss_dssp STTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHc
Confidence 479999999999975
No 447
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=84.15 E-value=0.46 Score=35.63 Aligned_cols=25 Identities=48% Similarity=0.429 Sum_probs=19.2
Q ss_pred CCCchHHHHHHHHHhc---CC--cEeechH
Q 029455 2 MGSGKTTVGKILSGVL---GY--SFFDCDT 26 (193)
Q Consensus 2 ~GsGKSTia~~La~~l---g~--~~~d~d~ 26 (193)
.|+||||++..||..| |. -++|.|.
T Consensus 12 gGvGKTt~a~~LA~~la~~g~~VlliD~D~ 41 (237)
T 1g3q_A 12 GGTGKTTVTANLSVALGDRGRKVLAVDGDL 41 (237)
T ss_dssp TTSSHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred CCCCHHHHHHHHHHHHHhcCCeEEEEeCCC
Confidence 5999999999998766 54 4567764
No 448
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=84.11 E-value=0.46 Score=36.14 Aligned_cols=25 Identities=32% Similarity=0.351 Sum_probs=18.6
Q ss_pred CCCchHHHHHHHHHhc---CC--cEeechH
Q 029455 2 MGSGKTTVGKILSGVL---GY--SFFDCDT 26 (193)
Q Consensus 2 ~GsGKSTia~~La~~l---g~--~~~d~d~ 26 (193)
.|+||||++..||..| |. -++|+|.
T Consensus 12 gGvGKTt~a~~LA~~la~~g~~VlliD~D~ 41 (260)
T 3q9l_A 12 GGVGKTTSSAAIATGLAQKGKKTVVIDFAI 41 (260)
T ss_dssp TTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CCCcHHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 5999999999888755 44 3567664
No 449
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=84.10 E-value=0.49 Score=35.88 Aligned_cols=17 Identities=24% Similarity=-0.138 Sum_probs=14.4
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
++||||||.+-.++.++
T Consensus 36 ~MgsGKTT~lL~~a~r~ 52 (214)
T 2j9r_A 36 SMFSGKSEELIRRVRRT 52 (214)
T ss_dssp STTSCHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHH
Confidence 47999999998887765
No 450
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=84.07 E-value=0.45 Score=41.64 Aligned_cols=17 Identities=41% Similarity=0.348 Sum_probs=13.2
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
+|||||||+...+...+
T Consensus 172 ~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 172 GPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp CTTSTHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 69999999887765443
No 451
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=84.03 E-value=0.37 Score=40.28 Aligned_cols=15 Identities=33% Similarity=0.180 Sum_probs=13.5
Q ss_pred CCCCchHHHHHHHHH
Q 029455 1 MMGSGKTTVGKILSG 15 (193)
Q Consensus 1 ~~GsGKSTia~~La~ 15 (193)
++||||||+.+.|..
T Consensus 39 ~sGaGKSTLln~L~g 53 (418)
T 2qag_C 39 ESGLGKSTLINSLFL 53 (418)
T ss_dssp CTTSSHHHHHHHHTT
T ss_pred CCCCcHHHHHHHHhC
Confidence 589999999999975
No 452
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=84.02 E-value=0.45 Score=34.17 Aligned_cols=16 Identities=38% Similarity=0.385 Sum_probs=13.5
Q ss_pred CCCCchHHHHHHHHHh
Q 029455 1 MMGSGKTTVGKILSGV 16 (193)
Q Consensus 1 ~~GsGKSTia~~La~~ 16 (193)
++|+||||+.+.|...
T Consensus 24 ~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 24 LDNAGKTTLLKQLASE 39 (181)
T ss_dssp STTSSHHHHHHHHCCS
T ss_pred CCCCCHHHHHHHHhcC
Confidence 4899999999999653
No 453
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=83.93 E-value=0.53 Score=33.98 Aligned_cols=15 Identities=20% Similarity=0.193 Sum_probs=12.9
Q ss_pred CCCCchHHHHHHHHH
Q 029455 1 MMGSGKTTVGKILSG 15 (193)
Q Consensus 1 ~~GsGKSTia~~La~ 15 (193)
.+|+||||+.+.|..
T Consensus 28 ~~~vGKSsL~~~~~~ 42 (184)
T 3ihw_A 28 NLSSGKSALVHRYLT 42 (184)
T ss_dssp CTTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHhc
Confidence 479999999988865
No 454
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=83.83 E-value=0.55 Score=37.03 Aligned_cols=25 Identities=32% Similarity=0.417 Sum_probs=19.2
Q ss_pred CCCchHHHHHHHHHhc---CC--cEeechH
Q 029455 2 MGSGKTTVGKILSGVL---GY--SFFDCDT 26 (193)
Q Consensus 2 ~GsGKSTia~~La~~l---g~--~~~d~d~ 26 (193)
+|+||||++.-||..+ |. -++|+|.
T Consensus 102 gG~GKTtva~nLA~~lA~~G~rVLLID~D~ 131 (286)
T 3la6_A 102 PSIGMTFVCANLAAVISQTNKRVLLIDCDM 131 (286)
T ss_dssp SSSSHHHHHHHHHHHHHTTTCCEEEEECCT
T ss_pred CCCcHHHHHHHHHHHHHhCCCCEEEEeccC
Confidence 7999999999888766 44 3567775
No 455
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=83.79 E-value=0.54 Score=34.21 Aligned_cols=16 Identities=25% Similarity=0.208 Sum_probs=13.6
Q ss_pred CCCCchHHHHHHHHHh
Q 029455 1 MMGSGKTTVGKILSGV 16 (193)
Q Consensus 1 ~~GsGKSTia~~La~~ 16 (193)
.+|+||||+.+.|...
T Consensus 16 ~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 16 DSGVGKTSLMNQYVNK 31 (207)
T ss_dssp CTTSSHHHHHHHHHHS
T ss_pred cCCCCHHHHHHHHHcC
Confidence 4899999999999753
No 456
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=83.75 E-value=0.46 Score=37.62 Aligned_cols=15 Identities=33% Similarity=0.306 Sum_probs=13.4
Q ss_pred CCCCchHHHHHHHHH
Q 029455 1 MMGSGKTTVGKILSG 15 (193)
Q Consensus 1 ~~GsGKSTia~~La~ 15 (193)
+||+||||+.+.|..
T Consensus 16 ~~nvGKSTLln~L~g 30 (301)
T 1ega_A 16 RPNVGKSTLLNKLLG 30 (301)
T ss_dssp SSSSSHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHC
Confidence 589999999999974
No 457
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=83.60 E-value=0.52 Score=33.48 Aligned_cols=15 Identities=13% Similarity=0.162 Sum_probs=13.1
Q ss_pred CCCCchHHHHHHHHH
Q 029455 1 MMGSGKTTVGKILSG 15 (193)
Q Consensus 1 ~~GsGKSTia~~La~ 15 (193)
.+|+||||+.+.|..
T Consensus 14 ~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 14 YRSVGKSSLTIQFVE 28 (181)
T ss_dssp STTSSHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHc
Confidence 479999999999974
No 458
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=83.56 E-value=0.55 Score=33.77 Aligned_cols=22 Identities=5% Similarity=-0.032 Sum_probs=15.3
Q ss_pred CCCCHHHHHHHHHHHHHhhhcc
Q 029455 163 SSLTPVTIAIEALEQIEGFLKE 184 (193)
Q Consensus 163 ~~~~~~~~~~~i~~~~~~~~~~ 184 (193)
++.+.+++.+.+.+.+.+....
T Consensus 162 ~g~gv~~l~~~l~~~i~~~~~~ 183 (196)
T 3tkl_A 162 NATNVEQSFMTMAAEIKKRMGP 183 (196)
T ss_dssp TCTTHHHHHHHHHHHHHHHC--
T ss_pred CCCCHHHHHHHHHHHHHHHhcc
Confidence 3567899888888887766543
No 459
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=83.46 E-value=0.56 Score=33.96 Aligned_cols=16 Identities=19% Similarity=0.140 Sum_probs=13.7
Q ss_pred CCCCchHHHHHHHHHh
Q 029455 1 MMGSGKTTVGKILSGV 16 (193)
Q Consensus 1 ~~GsGKSTia~~La~~ 16 (193)
.+|+||||+.+.|...
T Consensus 36 ~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 36 RAGVGKSALVVRFLTK 51 (196)
T ss_dssp CTTSSHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHhC
Confidence 4799999999999763
No 460
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=83.46 E-value=0.58 Score=33.76 Aligned_cols=17 Identities=18% Similarity=-0.064 Sum_probs=14.2
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
.+|+||||+.+.|...-
T Consensus 31 ~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 31 NSSVGKTSFLFRYADDT 47 (191)
T ss_dssp STTSSHHHHHHHHHHHT
T ss_pred CCCcCHHHHHHHHhcCC
Confidence 47999999999998643
No 461
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=83.43 E-value=0.49 Score=33.82 Aligned_cols=15 Identities=40% Similarity=0.565 Sum_probs=13.1
Q ss_pred CCCCchHHHHHHHHH
Q 029455 1 MMGSGKTTVGKILSG 15 (193)
Q Consensus 1 ~~GsGKSTia~~La~ 15 (193)
.+|+||||+.+.|..
T Consensus 26 ~~~~GKssl~~~l~~ 40 (186)
T 1ksh_A 26 LDNAGKTTILKKFNG 40 (186)
T ss_dssp STTSSHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHhc
Confidence 479999999999864
No 462
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=83.39 E-value=0.56 Score=34.19 Aligned_cols=15 Identities=20% Similarity=0.226 Sum_probs=13.3
Q ss_pred CCCCchHHHHHHHHH
Q 029455 1 MMGSGKTTVGKILSG 15 (193)
Q Consensus 1 ~~GsGKSTia~~La~ 15 (193)
.+|+||||+.+.|..
T Consensus 32 ~~~~GKSsli~~l~~ 46 (201)
T 3oes_A 32 YRCVGKTSLAHQFVE 46 (201)
T ss_dssp STTSSHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHh
Confidence 479999999999975
No 463
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=83.32 E-value=0.58 Score=33.83 Aligned_cols=16 Identities=19% Similarity=0.138 Sum_probs=13.6
Q ss_pred CCCCchHHHHHHHHHh
Q 029455 1 MMGSGKTTVGKILSGV 16 (193)
Q Consensus 1 ~~GsGKSTia~~La~~ 16 (193)
.+|+||||+.+.|...
T Consensus 31 ~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 31 DTGVGKSSIVCRFVQD 46 (192)
T ss_dssp CTTSSHHHHHHHHHHC
T ss_pred cCCCCHHHHHHHHhcC
Confidence 4799999999999753
No 464
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=83.31 E-value=0.56 Score=34.00 Aligned_cols=16 Identities=19% Similarity=0.065 Sum_probs=13.5
Q ss_pred CCCCchHHHHHHHHHh
Q 029455 1 MMGSGKTTVGKILSGV 16 (193)
Q Consensus 1 ~~GsGKSTia~~La~~ 16 (193)
.+||||||+.+.|...
T Consensus 22 ~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 22 SGGVGKSALTLQFMYD 37 (206)
T ss_dssp STTSSHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHhC
Confidence 4799999999999753
No 465
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=83.29 E-value=0.41 Score=35.03 Aligned_cols=15 Identities=33% Similarity=0.463 Sum_probs=12.8
Q ss_pred CCCCchHHHHHHHHH
Q 029455 1 MMGSGKTTVGKILSG 15 (193)
Q Consensus 1 ~~GsGKSTia~~La~ 15 (193)
++|+||||+.+.|..
T Consensus 33 ~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 33 LDNAGKTTLLHMLKD 47 (198)
T ss_dssp ETTSSHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHhc
Confidence 489999999999853
No 466
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=83.20 E-value=0.58 Score=33.64 Aligned_cols=15 Identities=20% Similarity=0.020 Sum_probs=13.1
Q ss_pred CCCCchHHHHHHHHH
Q 029455 1 MMGSGKTTVGKILSG 15 (193)
Q Consensus 1 ~~GsGKSTia~~La~ 15 (193)
.+|+||||+.+.|..
T Consensus 30 ~~~~GKSsli~~l~~ 44 (189)
T 2gf9_A 30 NSSVGKTSFLFRYAD 44 (189)
T ss_dssp STTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHc
Confidence 479999999999875
No 467
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=83.19 E-value=0.58 Score=33.12 Aligned_cols=16 Identities=19% Similarity=-0.039 Sum_probs=13.5
Q ss_pred CCCCchHHHHHHHHHh
Q 029455 1 MMGSGKTTVGKILSGV 16 (193)
Q Consensus 1 ~~GsGKSTia~~La~~ 16 (193)
.+|+||||+.+.|...
T Consensus 16 ~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 16 DGAVGKTCLLISYTSN 31 (182)
T ss_dssp STTSSHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHhcC
Confidence 4799999999999753
No 468
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=83.15 E-value=0.59 Score=33.57 Aligned_cols=15 Identities=20% Similarity=0.127 Sum_probs=13.1
Q ss_pred CCCCchHHHHHHHHH
Q 029455 1 MMGSGKTTVGKILSG 15 (193)
Q Consensus 1 ~~GsGKSTia~~La~ 15 (193)
.+||||||+.+.|..
T Consensus 28 ~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 28 DSNVGKTCLTYRFCA 42 (189)
T ss_dssp CTTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHc
Confidence 479999999999974
No 469
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=83.08 E-value=0.58 Score=34.53 Aligned_cols=16 Identities=19% Similarity=0.164 Sum_probs=13.8
Q ss_pred CCCCchHHHHHHHHHh
Q 029455 1 MMGSGKTTVGKILSGV 16 (193)
Q Consensus 1 ~~GsGKSTia~~La~~ 16 (193)
.+|+||||+.+.|...
T Consensus 36 ~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 36 DSQCGKTALLHVFAKD 51 (205)
T ss_dssp STTSSHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHhcC
Confidence 4799999999999763
No 470
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=83.05 E-value=0.6 Score=33.64 Aligned_cols=15 Identities=20% Similarity=0.182 Sum_probs=13.3
Q ss_pred CCCCchHHHHHHHHH
Q 029455 1 MMGSGKTTVGKILSG 15 (193)
Q Consensus 1 ~~GsGKSTia~~La~ 15 (193)
.+|+||||+.+.|..
T Consensus 16 ~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 16 AGGVGKSSLVLRFVK 30 (199)
T ss_dssp CTTSSHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHc
Confidence 479999999999975
No 471
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=82.99 E-value=0.54 Score=36.07 Aligned_cols=25 Identities=36% Similarity=0.521 Sum_probs=18.9
Q ss_pred CCCchHHHHHHHHHhc---CC--cEeechH
Q 029455 2 MGSGKTTVGKILSGVL---GY--SFFDCDT 26 (193)
Q Consensus 2 ~GsGKSTia~~La~~l---g~--~~~d~d~ 26 (193)
.|+||||++..||..| |. -++|+|.
T Consensus 10 GGvGKTT~a~nLA~~la~~G~~VlliD~D~ 39 (269)
T 1cp2_A 10 GGIGKSTTTQNLTSGLHAMGKTIMVVGCDP 39 (269)
T ss_dssp TTSSHHHHHHHHHHHHHTTTCCEEEEEECT
T ss_pred CCCcHHHHHHHHHHHHHHCCCcEEEEcCCC
Confidence 5999999999888765 44 4567773
No 472
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=82.93 E-value=0.56 Score=39.09 Aligned_cols=17 Identities=18% Similarity=0.153 Sum_probs=14.8
Q ss_pred CCCCchHHHHHHHHHhc
Q 029455 1 MMGSGKTTVGKILSGVL 17 (193)
Q Consensus 1 ~~GsGKSTia~~La~~l 17 (193)
++|+||||+++.|+...
T Consensus 182 ~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 182 PPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp CSSSSHHHHHHHHHHHH
T ss_pred CCCCChhHHHHHHHHHH
Confidence 68999999999998754
No 473
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=82.91 E-value=0.6 Score=34.38 Aligned_cols=15 Identities=27% Similarity=0.353 Sum_probs=13.2
Q ss_pred CCCCchHHHHHHHHH
Q 029455 1 MMGSGKTTVGKILSG 15 (193)
Q Consensus 1 ~~GsGKSTia~~La~ 15 (193)
.+|+||||+.+.|..
T Consensus 34 ~~~vGKSsLi~~l~~ 48 (201)
T 2ew1_A 34 NAGVGKTCLVRRFTQ 48 (201)
T ss_dssp STTSSHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHh
Confidence 479999999999875
No 474
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=82.90 E-value=0.54 Score=36.64 Aligned_cols=25 Identities=36% Similarity=0.566 Sum_probs=19.0
Q ss_pred CCCchHHHHHHHHHhc---CCc--EeechH
Q 029455 2 MGSGKTTVGKILSGVL---GYS--FFDCDT 26 (193)
Q Consensus 2 ~GsGKSTia~~La~~l---g~~--~~d~d~ 26 (193)
.|+||||++..||..| |.. ++|+|.
T Consensus 11 GGvGKTT~a~nLA~~La~~G~rVlliD~D~ 40 (289)
T 2afh_E 11 GGIGKSTTTQNLVAALAEMGKKVMIVGCDP 40 (289)
T ss_dssp TTSSHHHHHHHHHHHHHHTTCCEEEEEECS
T ss_pred CcCcHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 5999999999988765 544 567773
No 475
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=82.74 E-value=0.63 Score=33.56 Aligned_cols=16 Identities=19% Similarity=0.214 Sum_probs=13.5
Q ss_pred CCCCchHHHHHHHHHh
Q 029455 1 MMGSGKTTVGKILSGV 16 (193)
Q Consensus 1 ~~GsGKSTia~~La~~ 16 (193)
.+|+||||+.+.|...
T Consensus 29 ~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 29 RRGAGKSALTVKFLTK 44 (187)
T ss_dssp CTTSSHHHHHHHHHHS
T ss_pred CCCCcHHHHHHHHHhC
Confidence 4799999999998753
No 476
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=82.73 E-value=0.36 Score=34.34 Aligned_cols=14 Identities=43% Similarity=0.494 Sum_probs=12.2
Q ss_pred CCCCchHHHHHHHH
Q 029455 1 MMGSGKTTVGKILS 14 (193)
Q Consensus 1 ~~GsGKSTia~~La 14 (193)
++||||||+.+.|.
T Consensus 26 ~~~~GKssli~~l~ 39 (183)
T 1moz_A 26 LDGAGKTTILYRLQ 39 (183)
T ss_dssp ETTSSHHHHHHHTC
T ss_pred CCCCCHHHHHHHHh
Confidence 47999999999885
No 477
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=82.73 E-value=0.62 Score=33.39 Aligned_cols=16 Identities=19% Similarity=0.181 Sum_probs=13.6
Q ss_pred CCCCchHHHHHHHHHh
Q 029455 1 MMGSGKTTVGKILSGV 16 (193)
Q Consensus 1 ~~GsGKSTia~~La~~ 16 (193)
.+|+||||+.+.|...
T Consensus 23 ~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 23 ESGVGKSSLLLRFTDD 38 (195)
T ss_dssp STTSSHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHcC
Confidence 4799999999999753
No 478
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=82.60 E-value=0.59 Score=33.50 Aligned_cols=15 Identities=33% Similarity=0.257 Sum_probs=13.2
Q ss_pred CCCCchHHHHHHHHH
Q 029455 1 MMGSGKTTVGKILSG 15 (193)
Q Consensus 1 ~~GsGKSTia~~La~ 15 (193)
.+||||||+.+.|..
T Consensus 24 ~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 24 LDNAGKTTILYQFSM 38 (187)
T ss_dssp STTSSHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHhc
Confidence 479999999999974
No 479
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=82.60 E-value=0.59 Score=33.96 Aligned_cols=15 Identities=20% Similarity=0.020 Sum_probs=13.1
Q ss_pred CCCCchHHHHHHHHH
Q 029455 1 MMGSGKTTVGKILSG 15 (193)
Q Consensus 1 ~~GsGKSTia~~La~ 15 (193)
.+|+||||+.+.|..
T Consensus 16 ~~~~GKSsli~~l~~ 30 (203)
T 1zbd_A 16 NSSVGKTSFLFRYAD 30 (203)
T ss_dssp STTSSHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHhc
Confidence 479999999999975
No 480
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=82.48 E-value=0.64 Score=33.51 Aligned_cols=15 Identities=20% Similarity=0.220 Sum_probs=13.2
Q ss_pred CCCCchHHHHHHHHH
Q 029455 1 MMGSGKTTVGKILSG 15 (193)
Q Consensus 1 ~~GsGKSTia~~La~ 15 (193)
.+|+||||+.+.|..
T Consensus 29 ~~~~GKSsli~~l~~ 43 (191)
T 2a5j_A 29 DTGVGKSCLLLQFTD 43 (191)
T ss_dssp STTSSHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHhc
Confidence 479999999999975
No 481
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=82.46 E-value=0.59 Score=39.14 Aligned_cols=16 Identities=19% Similarity=0.137 Sum_probs=13.9
Q ss_pred CCCCchHHHHHHHHHh
Q 029455 1 MMGSGKTTVGKILSGV 16 (193)
Q Consensus 1 ~~GsGKSTia~~La~~ 16 (193)
+||+||||++..++..
T Consensus 208 ~pg~GKT~lal~ia~~ 223 (444)
T 2q6t_A 208 RPAMGKTAFALTIAQN 223 (444)
T ss_dssp CTTSCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH
Confidence 5999999999988764
No 482
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=82.45 E-value=0.64 Score=33.45 Aligned_cols=15 Identities=33% Similarity=0.441 Sum_probs=13.2
Q ss_pred CCCCchHHHHHHHHH
Q 029455 1 MMGSGKTTVGKILSG 15 (193)
Q Consensus 1 ~~GsGKSTia~~La~ 15 (193)
.+|+||||+.+.|..
T Consensus 30 ~~~~GKSsli~~l~~ 44 (188)
T 1zd9_A 30 LQYSGKTTFVNVIAS 44 (188)
T ss_dssp STTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHc
Confidence 479999999999975
No 483
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=82.36 E-value=0.6 Score=35.69 Aligned_cols=16 Identities=25% Similarity=0.453 Sum_probs=13.7
Q ss_pred CCCCchHHHHHHHHHh
Q 029455 1 MMGSGKTTVGKILSGV 16 (193)
Q Consensus 1 ~~GsGKSTia~~La~~ 16 (193)
.+||||||+...|...
T Consensus 30 ~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 30 KTGTGKSAAGNSILRK 45 (260)
T ss_dssp CTTSCHHHHHHHHHTS
T ss_pred CCCCCHHHHHHHHhCC
Confidence 4899999999999753
No 484
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=82.32 E-value=0.48 Score=33.58 Aligned_cols=15 Identities=20% Similarity=0.104 Sum_probs=13.2
Q ss_pred CCCCchHHHHHHHHH
Q 029455 1 MMGSGKTTVGKILSG 15 (193)
Q Consensus 1 ~~GsGKSTia~~La~ 15 (193)
.+|+||||+.+.|..
T Consensus 15 ~~~vGKTsli~~l~~ 29 (178)
T 2iwr_A 15 DARSGKSSLIHRFLT 29 (178)
T ss_dssp CGGGCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHh
Confidence 479999999999976
No 485
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=82.30 E-value=0.65 Score=34.10 Aligned_cols=16 Identities=31% Similarity=0.110 Sum_probs=13.8
Q ss_pred CCCCchHHHHHHHHHh
Q 029455 1 MMGSGKTTVGKILSGV 16 (193)
Q Consensus 1 ~~GsGKSTia~~La~~ 16 (193)
.+|+||||+.+.|...
T Consensus 15 ~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 15 LCDSGKTLLFVRLLTG 30 (214)
T ss_dssp STTSSHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHhCC
Confidence 4799999999999763
No 486
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=82.30 E-value=0.65 Score=33.75 Aligned_cols=15 Identities=20% Similarity=0.080 Sum_probs=13.2
Q ss_pred CCCCchHHHHHHHHH
Q 029455 1 MMGSGKTTVGKILSG 15 (193)
Q Consensus 1 ~~GsGKSTia~~La~ 15 (193)
.+|+||||+.+.|..
T Consensus 36 ~~~~GKSsli~~l~~ 50 (199)
T 2p5s_A 36 DAAVGKSSFLMRLCK 50 (199)
T ss_dssp STTSSHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHh
Confidence 479999999999975
No 487
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=82.16 E-value=0.61 Score=35.65 Aligned_cols=25 Identities=40% Similarity=0.530 Sum_probs=19.1
Q ss_pred CCCchHHHHHHHHHhc---CC--cEeechH
Q 029455 2 MGSGKTTVGKILSGVL---GY--SFFDCDT 26 (193)
Q Consensus 2 ~GsGKSTia~~La~~l---g~--~~~d~d~ 26 (193)
.|+||||++..||..| |. -++|.|.
T Consensus 12 gGvGKTt~a~~LA~~la~~g~~VlliD~D~ 41 (263)
T 1hyq_A 12 GGTGKTTITANLGVALAQLGHDVTIVDADI 41 (263)
T ss_dssp SCSCHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CCCCHHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 5999999999998765 54 4567664
No 488
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=82.13 E-value=0.55 Score=43.48 Aligned_cols=15 Identities=27% Similarity=0.454 Sum_probs=13.6
Q ss_pred CCCCchHHHHHHHHH
Q 029455 1 MMGSGKTTVGKILSG 15 (193)
Q Consensus 1 ~~GsGKSTia~~La~ 15 (193)
+.||||||+.+.|+.
T Consensus 469 pNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 469 PNGCGKSTLMRAIAN 483 (986)
T ss_dssp STTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHhC
Confidence 589999999999983
No 489
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=82.02 E-value=0.67 Score=33.77 Aligned_cols=15 Identities=27% Similarity=0.224 Sum_probs=13.2
Q ss_pred CCCCchHHHHHHHHH
Q 029455 1 MMGSGKTTVGKILSG 15 (193)
Q Consensus 1 ~~GsGKSTia~~La~ 15 (193)
.+|+||||+.+.|..
T Consensus 16 ~~~~GKSsli~~l~~ 30 (206)
T 2bcg_Y 16 NSGVGKSCLLLRFSD 30 (206)
T ss_dssp STTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHhc
Confidence 479999999999975
No 490
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=81.94 E-value=0.69 Score=33.38 Aligned_cols=16 Identities=25% Similarity=-0.016 Sum_probs=13.6
Q ss_pred CCCCchHHHHHHHHHh
Q 029455 1 MMGSGKTTVGKILSGV 16 (193)
Q Consensus 1 ~~GsGKSTia~~La~~ 16 (193)
.+|+||||+.+.|...
T Consensus 31 ~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 31 DGAVGKTCLLLAFSKG 46 (194)
T ss_dssp STTSSHHHHHHHHHHS
T ss_pred cCCCCHHHHHHHHhcC
Confidence 4799999999999763
No 491
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=81.91 E-value=0.7 Score=33.87 Aligned_cols=15 Identities=27% Similarity=0.166 Sum_probs=13.3
Q ss_pred CCCCchHHHHHHHHH
Q 029455 1 MMGSGKTTVGKILSG 15 (193)
Q Consensus 1 ~~GsGKSTia~~La~ 15 (193)
.+|+||||+.+.|..
T Consensus 33 ~~~~GKSsli~~l~~ 47 (207)
T 2fv8_A 33 DGACGKTCLLIVFSK 47 (207)
T ss_dssp CTTSSHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHhc
Confidence 479999999999975
No 492
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=81.89 E-value=0.49 Score=34.56 Aligned_cols=14 Identities=29% Similarity=0.454 Sum_probs=12.4
Q ss_pred CCCCchHHHHHHHH
Q 029455 1 MMGSGKTTVGKILS 14 (193)
Q Consensus 1 ~~GsGKSTia~~La 14 (193)
.+|+||||+.+.|.
T Consensus 31 ~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 31 ESGVGKSTLAGTFG 44 (195)
T ss_dssp STTSSHHHHHHHTC
T ss_pred CCCCCHHHHHHHHH
Confidence 47999999999985
No 493
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=81.87 E-value=0.62 Score=36.64 Aligned_cols=24 Identities=38% Similarity=0.565 Sum_probs=18.2
Q ss_pred CCCchHHHHHHHHHhc---CCc--Eeech
Q 029455 2 MGSGKTTVGKILSGVL---GYS--FFDCD 25 (193)
Q Consensus 2 ~GsGKSTia~~La~~l---g~~--~~d~d 25 (193)
.|+||||++..||..| |.. ++|+|
T Consensus 50 GGvGKTT~a~nLA~~La~~G~~VlliD~D 78 (307)
T 3end_A 50 GGIGKSTTSSNLSAAFSILGKRVLQIGCD 78 (307)
T ss_dssp TTSSHHHHHHHHHHHHHHTTCCEEEEEES
T ss_pred CCccHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 5999999998887755 544 56766
No 494
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=81.80 E-value=0.57 Score=37.32 Aligned_cols=16 Identities=19% Similarity=-0.218 Sum_probs=14.9
Q ss_pred CCCCchHHHHHHHHHh
Q 029455 1 MMGSGKTTVGKILSGV 16 (193)
Q Consensus 1 ~~GsGKSTia~~La~~ 16 (193)
|||+||||+++.|++.
T Consensus 26 p~G~GKtt~a~~la~~ 41 (305)
T 2gno_A 26 EDLSYPREVSLELPEY 41 (305)
T ss_dssp SSSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHh
Confidence 7999999999999985
No 495
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=81.66 E-value=0.67 Score=37.58 Aligned_cols=16 Identities=19% Similarity=-0.014 Sum_probs=14.1
Q ss_pred CCCCchHHHHHHHHHh
Q 029455 1 MMGSGKTTVGKILSGV 16 (193)
Q Consensus 1 ~~GsGKSTia~~La~~ 16 (193)
+||+||||++..++..
T Consensus 54 ~pG~GKTt~al~ia~~ 69 (338)
T 4a1f_A 54 RPSMGKTSLMMNMVLS 69 (338)
T ss_dssp CTTSCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH
Confidence 5999999999998765
No 496
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=81.62 E-value=0.63 Score=33.77 Aligned_cols=15 Identities=33% Similarity=0.233 Sum_probs=12.8
Q ss_pred CCCCchHHHHHHHHH
Q 029455 1 MMGSGKTTVGKILSG 15 (193)
Q Consensus 1 ~~GsGKSTia~~La~ 15 (193)
++|+||||+.+.|..
T Consensus 37 ~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 37 LDAAGKTTILYKLKL 51 (192)
T ss_dssp STTSSHHHHHHHHCS
T ss_pred CCCCCHHHHHHHHHh
Confidence 479999999999853
No 497
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=81.61 E-value=0.69 Score=34.38 Aligned_cols=19 Identities=26% Similarity=0.242 Sum_probs=14.8
Q ss_pred CCCCchHHHHHHHHHhcCC
Q 029455 1 MMGSGKTTVGKILSGVLGY 19 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~ 19 (193)
+.||||||+...|.=.|+.
T Consensus 31 ~NgsGKStil~ai~~~l~g 49 (203)
T 3qks_A 31 QNGSGKSSLLDAILVGLYW 49 (203)
T ss_dssp CTTSSHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHhcC
Confidence 5799999999988654443
No 498
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=81.48 E-value=0.65 Score=37.13 Aligned_cols=25 Identities=28% Similarity=0.339 Sum_probs=18.6
Q ss_pred CCCchHHHHHHHHHhc---CCc--EeechH
Q 029455 2 MGSGKTTVGKILSGVL---GYS--FFDCDT 26 (193)
Q Consensus 2 ~GsGKSTia~~La~~l---g~~--~~d~d~ 26 (193)
.|+||||+|..||..+ |.. ++|+|-
T Consensus 23 GGvGKTTvA~~LA~~lA~~G~rVLlvD~D~ 52 (324)
T 3zq6_A 23 GGVGKTTISAATALWMARSGKKTLVISTDP 52 (324)
T ss_dssp TTSSHHHHHHHHHHHHHHTTCCEEEEECCS
T ss_pred CCchHHHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 6999999999887654 543 567664
No 499
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=81.41 E-value=0.68 Score=38.35 Aligned_cols=15 Identities=27% Similarity=0.337 Sum_probs=13.9
Q ss_pred CCCCchHHHHHHHHH
Q 029455 1 MMGSGKTTVGKILSG 15 (193)
Q Consensus 1 ~~GsGKSTia~~La~ 15 (193)
+||+||||+-+.|..
T Consensus 28 ~pnaGKSTL~n~Ltg 42 (392)
T 1ni3_A 28 MPNVGKSTFFRAITK 42 (392)
T ss_dssp CSSSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHC
Confidence 589999999999986
No 500
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*
Probab=81.37 E-value=2.4 Score=34.21 Aligned_cols=19 Identities=26% Similarity=0.562 Sum_probs=16.9
Q ss_pred CCCCchHHHHHHHHHhcCC
Q 029455 1 MMGSGKTTVGKILSGVLGY 19 (193)
Q Consensus 1 ~~GsGKSTia~~La~~lg~ 19 (193)
+.||||||+++.|++.|+.
T Consensus 15 ~dGaGKTT~~~~La~~L~~ 33 (334)
T 1p6x_A 15 VYGIGKSTTGRVMASAASG 33 (334)
T ss_dssp STTSSHHHHHHHHHSGGGC
T ss_pred CCCCCHHHHHHHHHHHhcc
Confidence 4699999999999999864
Done!