BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029457
(193 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ZSH|A Chain A, Structural Basis Of Gibberellin(Ga3)-Induced Della
Recognition By The Gibberellin Receptor
pdb|2ZSI|A Chain A, Structural Basis Of Gibberellin(Ga4)-Induced Della
Recognition By The Gibberellin Receptor
Length = 351
Score = 139 bits (349), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 74/161 (45%), Positives = 106/161 (65%), Gaps = 6/161 (3%)
Query: 24 FLAGDSAGGNLAHHVAVKAGEYNFSNLKMLGLISLQPFFGGEERTESEIKNDRNPLLSLD 83
FLAGDS+GGN+AH+VA++AGE S + +LG I L P FGG ERTESE D +++
Sbjct: 193 FLAGDSSGGNIAHNVALRAGE---SGIDVLGNILLNPMFGGNERTESEKSLDGKYFVTVR 249
Query: 84 FTDWYWKVFLPNGSNRDHPAAHVFGPKS-SVDVIPDTFPATLLFVGGLDLLKDWQMKYYE 142
DWYWK FLP G +R+HPA + F P+ S++ + +FP +L+ V GLDL++DWQ+ Y E
Sbjct: 250 DRDWYWKAFLPEGEDREHPACNPFSPRGKSLEGV--SFPKSLVVVAGLDLIRDWQLAYAE 307
Query: 143 GLKQAGKEVYLVEDPKAFHCSFMYKEFPEYNLFVKEIEDFM 183
GLK+AG+EV L+ KA ++ ++ + EI F+
Sbjct: 308 GLKKAGQEVKLMHLEKATVGFYLLPNNNHFHNVMDEISAFV 348
>pdb|3EBL|A Chain A, Crystal Structure Of Rice Gid1 Complexed With Ga4
pdb|3EBL|B Chain B, Crystal Structure Of Rice Gid1 Complexed With Ga4
pdb|3EBL|C Chain C, Crystal Structure Of Rice Gid1 Complexed With Ga4
pdb|3EBL|D Chain D, Crystal Structure Of Rice Gid1 Complexed With Ga4
pdb|3EBL|E Chain E, Crystal Structure Of Rice Gid1 Complexed With Ga4
pdb|3EBL|F Chain F, Crystal Structure Of Rice Gid1 Complexed With Ga4
pdb|3ED1|A Chain A, Crystal Structure Of Rice Gid1 Complexed With Ga3
pdb|3ED1|B Chain B, Crystal Structure Of Rice Gid1 Complexed With Ga3
pdb|3ED1|C Chain C, Crystal Structure Of Rice Gid1 Complexed With Ga3
pdb|3ED1|D Chain D, Crystal Structure Of Rice Gid1 Complexed With Ga3
pdb|3ED1|E Chain E, Crystal Structure Of Rice Gid1 Complexed With Ga3
pdb|3ED1|F Chain F, Crystal Structure Of Rice Gid1 Complexed With Ga3
Length = 365
Score = 121 bits (304), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 66/161 (40%), Positives = 96/161 (59%), Gaps = 6/161 (3%)
Query: 24 FLAGDSAGGNLAHHVAVKAGEYNFSNLKMLGLISLQPFFGGEERTESEIKNDRNPLLSLD 83
FL+GDS+GGN+AHHVAV+A + +K+ G I L FGG ERTESE + D ++L
Sbjct: 192 FLSGDSSGGNIAHHVAVRAAD---EGVKVCGNILLNAMFGGTERTESERRLDGKYFVTLQ 248
Query: 84 FTDWYWKVFLPNGSNRDHPAAHVFGPKS-SVDVIPDTFPATLLFVGGLDLLKDWQMKYYE 142
DWYWK +LP ++RDHPA + FGP + +P F +L+ V GLDL D Q+ Y +
Sbjct: 249 DRDWYWKAYLPEDADRDHPACNPFGPNGRRLGGLP--FAKSLIIVSGLDLTCDRQLAYAD 306
Query: 143 GLKQAGKEVYLVEDPKAFHCSFMYKEFPEYNLFVKEIEDFM 183
L++ G V +V+ A ++ Y+ ++EI DF+
Sbjct: 307 ALREDGHHVKVVQCENATVGFYLLPNTVHYHEVMEEISDFL 347
>pdb|2O7R|A Chain A, Plant Carboxylesterase Aecxe1 From Actinidia Eriantha With
Acyl Adduct
pdb|2O7V|A Chain A, Carboxylesterase Aecxe1 From Actinidia Eriantha Covalently
Inhibited By Paraoxon
Length = 338
Score = 70.9 bits (172), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 86/168 (51%), Gaps = 8/168 (4%)
Query: 1 MDALKFLDNNLEELPIN-VNPKWCFLAGDSAGGNLAHHVAVKAGEY--NFSNLKMLGLIS 57
M+AL+++ ++ +E N + CF+ G+SAGGN+A+H ++A LK+ GL+
Sbjct: 140 MEALQWIKDSRDEWLTNFADFSNCFIMGESAGGNIAYHAGLRAAAVADELLPLKIKGLVL 199
Query: 58 LQPFFGGEERTESEIKNDRNPLLSLDFTDWYWKVFLPNGSNRDH----PAAHVFGPKSSV 113
+P FGG +RT SE++ + L D W++ LP G++RDH P A P S
Sbjct: 200 DEPGFGGSKRTGSELRLANDSRLPTFVLDLIWELSLPMGADRDHEYCNPTAES-EPLYSF 258
Query: 114 DVIPDTFPATLLFVGGLDLLKDWQMKYYEGLKQAGKEVYLVEDPKAFH 161
D I ++ D + D QM+ E L++ G +V D +H
Sbjct: 259 DKIRSLGWRVMVVGCHGDPMIDRQMELAERLEKKGVDVVAQFDVGGYH 306
>pdb|1JJI|A Chain A, The Crystal Structure Of A Hyper-Thermophilic
Carboxylesterase From The Archaeon Archaeoglobus
Fulgidus
pdb|1JJI|B Chain B, The Crystal Structure Of A Hyper-Thermophilic
Carboxylesterase From The Archaeon Archaeoglobus
Fulgidus
pdb|1JJI|C Chain C, The Crystal Structure Of A Hyper-Thermophilic
Carboxylesterase From The Archaeon Archaeoglobus
Fulgidus
pdb|1JJI|D Chain D, The Crystal Structure Of A Hyper-Thermophilic
Carboxylesterase From The Archaeon Archaeoglobus
Fulgidus
Length = 311
Score = 43.1 bits (100), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 68/161 (42%), Gaps = 11/161 (6%)
Query: 2 DALKFLDNNLEELPINVNPKWCFLAGDSAGGNLAHHVAVKAGEYNFSNLKMLGLISLQPF 61
DA K++ N EEL ++P F+ GDSAGGNLA V++ A + +K LI P
Sbjct: 135 DATKWVAENAEEL--RIDPSKIFVGGDSAGGNLAAAVSIMARDSGEDFIKHQILI--YPV 190
Query: 62 FGGEERTESEIKNDRNP-LLSLDFTDWYWKVFLPNGSNRDHPAAHVFGPKSSVDVIPDTF 120
T S ++ +L W+ + + ++ +P A V +
Sbjct: 191 VNFVAPTPSLLEFGEGLWILDQKIMSWFSEQYFSREEDKFNPLASVIFADL------ENL 244
Query: 121 PATLLFVGGLDLLKDWQMKYYEGLKQAGKEVYLVEDPKAFH 161
P L+ D L+D + + L++AG E +V H
Sbjct: 245 PPALIITAEYDPLRDEGEVFGQMLRRAGVEASIVRYRGVLH 285
>pdb|3AIM|A Chain A, R267e Mutant Of A Hsl-Like Carboxylesterase From
Sulfolobus Tokodaii
pdb|3AIM|B Chain B, R267e Mutant Of A Hsl-Like Carboxylesterase From
Sulfolobus Tokodaii
pdb|3AIM|C Chain C, R267e Mutant Of A Hsl-Like Carboxylesterase From
Sulfolobus Tokodaii
pdb|3AIM|D Chain D, R267e Mutant Of A Hsl-Like Carboxylesterase From
Sulfolobus Tokodaii
Length = 323
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 73/163 (44%), Gaps = 18/163 (11%)
Query: 2 DALKFLDNNLEELPINVNPKWCF-LAGDSAGGNLAHHVAVKAGEYNFSNLKMLGLISLQP 60
DALK++ NN E+ N K+ + GDSAGGNLA A+ + + N+K+ + + P
Sbjct: 146 DALKWVYNNSEKF----NGKYGIAVGGDSAGGNLAAVTAILSKK---ENIKLKYQVLIYP 198
Query: 61 FFGGEERTESEIKNDRNPLLSLDFTDWYWKVFLPNGSNRDHPAAHVFGPKSSVDVIPDT- 119
+ T+S N L+ + DW+ + +L + ++ F P ++ D
Sbjct: 199 AVSFDLITKSLYDNGEGFFLTREHIDWFGQQYLRSFADL---LDFRFSP-----ILADLN 250
Query: 120 -FPATLLFVGGLDLLKDWQMKYYEGLKQAGKEVYLVEDPKAFH 161
P L+ D L+D Y L Q+G +V VE H
Sbjct: 251 DLPPALIITAEHDPLRDQGEAYANKLLQSGVQVTSVEFNNVIH 293
>pdb|3AIO|A Chain A, R267k Mutant Of A Hsl-Like Carboxylesterase From
Sulfolobus Tokodaii
pdb|3AIO|B Chain B, R267k Mutant Of A Hsl-Like Carboxylesterase From
Sulfolobus Tokodaii
pdb|3AIO|C Chain C, R267k Mutant Of A Hsl-Like Carboxylesterase From
Sulfolobus Tokodaii
pdb|3AIO|D Chain D, R267k Mutant Of A Hsl-Like Carboxylesterase From
Sulfolobus Tokodaii
Length = 323
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 73/163 (44%), Gaps = 18/163 (11%)
Query: 2 DALKFLDNNLEELPINVNPKWCF-LAGDSAGGNLAHHVAVKAGEYNFSNLKMLGLISLQP 60
DALK++ NN E+ N K+ + GDSAGGNLA A+ + + N+K+ + + P
Sbjct: 146 DALKWVYNNSEKF----NGKYGIAVGGDSAGGNLAAVTAILSKK---ENIKLKYQVLIYP 198
Query: 61 FFGGEERTESEIKNDRNPLLSLDFTDWYWKVFLPNGSNRDHPAAHVFGPKSSVDVIPDT- 119
+ T+S N L+ + DW+ + +L + ++ F P ++ D
Sbjct: 199 AVSFDLITKSLYDNGEGFFLTREHIDWFGQQYLRSFADL---LDFRFSP-----ILADLN 250
Query: 120 -FPATLLFVGGLDLLKDWQMKYYEGLKQAGKEVYLVEDPKAFH 161
P L+ D L+D Y L Q+G +V V+ H
Sbjct: 251 DLPPALIITAEHDPLRDQGEAYANKLLQSGVQVTSVKFNNVIH 293
>pdb|1LZK|A Chain A, Bacterial Heroin Esterase Complex With Transition State
Analog Dimethylarsenic Acid
Length = 323
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 65/165 (39%), Gaps = 8/165 (4%)
Query: 3 ALKFLDNNLEELPINVNPKWCFLAGDSAGGNLAHHVAVKAGEYNFSNLKMLGLISLQPFF 62
AL ++ + EEL ++P + G SAGG LA +KA + + L P
Sbjct: 136 ALLYIHAHAEEL--GIDPSRIAVGGQSAGGGLAAGTVLKARDEGVVPVAFQFL--EIPEL 191
Query: 63 GGEERTESEIKNDRNPLLSLDFTDWYWKVFLPNG-SNRDHPAAHVFG-PKSSVDVIPDTF 120
T S PL WK +L S + P ++ P + D+
Sbjct: 192 DDRLETVSXTNFVDTPLWHRPNAILSWKYYLGESYSGPEDPDVSIYAAPSRATDLT--GL 249
Query: 121 PATLLFVGGLDLLKDWQMKYYEGLKQAGKEVYLVEDPKAFHCSFM 165
P T L LD L+D ++Y L QAG V L P FH S +
Sbjct: 250 PPTYLSTXELDPLRDEGIEYALRLLQAGVSVELHSFPGTFHGSAL 294
>pdb|3AIK|A Chain A, Crystal Structure Of A Hsl-Like Carboxylesterase From
Sulfolobus Tokodaii
pdb|3AIK|B Chain B, Crystal Structure Of A Hsl-Like Carboxylesterase From
Sulfolobus Tokodaii
pdb|3AIK|C Chain C, Crystal Structure Of A Hsl-Like Carboxylesterase From
Sulfolobus Tokodaii
pdb|3AIK|D Chain D, Crystal Structure Of A Hsl-Like Carboxylesterase From
Sulfolobus Tokodaii
pdb|3AIL|A Chain A, Crystal Structure Of A Hsl-Like Carboxylesterase From
Sulfolobus Tokodaii Complexed With Paraoxon
pdb|3AIL|B Chain B, Crystal Structure Of A Hsl-Like Carboxylesterase From
Sulfolobus Tokodaii Complexed With Paraoxon
pdb|3AIL|C Chain C, Crystal Structure Of A Hsl-Like Carboxylesterase From
Sulfolobus Tokodaii Complexed With Paraoxon
pdb|3AIL|D Chain D, Crystal Structure Of A Hsl-Like Carboxylesterase From
Sulfolobus Tokodaii Complexed With Paraoxon
Length = 323
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 72/163 (44%), Gaps = 18/163 (11%)
Query: 2 DALKFLDNNLEELPINVNPKWCF-LAGDSAGGNLAHHVAVKAGEYNFSNLKMLGLISLQP 60
DALK++ NN E+ N K+ + GDSAGGNLA A+ + + N+K+ + + P
Sbjct: 146 DALKWVYNNSEKF----NGKYGIAVGGDSAGGNLAAVTAILSKK---ENIKLKYQVLIYP 198
Query: 61 FFGGEERTESEIKNDRNPLLSLDFTDWYWKVFLPNGSNRDHPAAHVFGPKSSVDVIPDT- 119
+ T+S N L+ + DW+ + +L + ++ F P ++ D
Sbjct: 199 AVSFDLITKSLYDNGEGFFLTREHIDWFGQQYLRSFADL---LDFRFSP-----ILADLN 250
Query: 120 -FPATLLFVGGLDLLKDWQMKYYEGLKQAGKEVYLVEDPKAFH 161
P L+ D L+D Y L Q+G +V V H
Sbjct: 251 DLPPALIITAEHDPLRDQGEAYANKLLQSGVQVTSVRFNNVIH 293
>pdb|1LZL|A Chain A, Bacterial Heroin Esterase
Length = 323
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 75/176 (42%), Gaps = 30/176 (17%)
Query: 3 ALKFLDNNLEELPINVNPKWCFLAGDSAGGNLAHHVAVKAGE-----YNFSNLKM----- 52
AL ++ + EEL ++P + G SAGG LA +KA + F L++
Sbjct: 136 ALLYIHAHAEEL--GIDPSRIAVGGQSAGGGLAAGTVLKARDEGVVPVAFQFLEIPELDD 193
Query: 53 -LGLISLQPFFGGEERTESEIKNDRNPLLSLDFTDWYWKVFLPNG-SNRDHPAAHVFG-P 109
L +S+ F ++ + + N +LS WK +L S + P ++ P
Sbjct: 194 RLETVSMTNFV------DTPLWHRPNAILS-------WKYYLGESYSGPEDPDVSIYAAP 240
Query: 110 KSSVDVIPDTFPATLLFVGGLDLLKDWQMKYYEGLKQAGKEVYLVEDPKAFHCSFM 165
+ D+ P T L LD L+D ++Y L QAG V L P FH S +
Sbjct: 241 SRATDLT--GLPPTYLSTMELDPLRDEGIEYALRLLQAGVSVELHSFPGTFHGSAL 294
>pdb|3AIN|A Chain A, R267g Mutant Of A Hsl-Like Carboxylesterase From
Sulfolobus Tokodaii
pdb|3AIN|B Chain B, R267g Mutant Of A Hsl-Like Carboxylesterase From
Sulfolobus Tokodaii
pdb|3AIN|C Chain C, R267g Mutant Of A Hsl-Like Carboxylesterase From
Sulfolobus Tokodaii
pdb|3AIN|D Chain D, R267g Mutant Of A Hsl-Like Carboxylesterase From
Sulfolobus Tokodaii
Length = 323
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 71/156 (45%), Gaps = 18/156 (11%)
Query: 2 DALKFLDNNLEELPINVNPKWCF-LAGDSAGGNLAHHVAVKAGEYNFSNLKMLGLISLQP 60
DALK++ NN E+ N K+ + GDSAGGNLA A+ + + N+K+ + + P
Sbjct: 146 DALKWVYNNSEKF----NGKYGIAVGGDSAGGNLAAVTAILSKK---ENIKLKYQVLIYP 198
Query: 61 FFGGEERTESEIKNDRNPLLSLDFTDWYWKVFLPNGSNRDHPAAHVFGPKSSVDVIPDT- 119
+ T+S N L+ + DW+ + +L + ++ F P ++ D
Sbjct: 199 AVSFDLITKSLYDNGEGFFLTREHIDWFGQQYLRSFADL---LDFRFSP-----ILADLN 250
Query: 120 -FPATLLFVGGLDLLKDWQMKYYEGLKQAGKEVYLV 154
P L+ D L+D Y L Q+G +V V
Sbjct: 251 DLPPALIITAEHDPLRDQGEAYANKLLQSGVQVTSV 286
>pdb|1QZ3|A Chain A, Crystal Structure Of Mutant M211sR215L OF CARBOXYLESTERASE
Est2 Complexed With Hexadecanesulfonate
pdb|1U4N|A Chain A, Crystal Structure Analysis Of The M211sR215L EST2 MUTANT
Length = 310
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 61/150 (40%), Gaps = 7/150 (4%)
Query: 2 DALKFLDNNLEELPINVNPKWCFLAGDSAGGNLAHHVAVKAGEYNFSNLKMLGLISLQPF 61
DAL+++ + +++P + GDSAGGNLA ++ A E L LI
Sbjct: 130 DALQWIAERAADF--HLDPARIAVGGDSAGGNLAAVTSILAKERGGPALAFQLLIYPSTG 187
Query: 62 FGGEERTESEIKNDRNPLLSLDFTDWYWKVFLPNGSNRDHPAAHVFGPKSSVDVIPDTFP 121
+ S +N LL+ + W+ +L + HP F P D+ P
Sbjct: 188 YDPAHPPASIEENAEGYLLTGGMSLWFLDQYLNSLEELTHP---WFSPVLYPDL--SGLP 242
Query: 122 ATLLFVGGLDLLKDWQMKYYEGLKQAGKEV 151
+ D L+D Y E L +AG +V
Sbjct: 243 PAYIATAQYDPLRDVGKLYAEALNKAGVKV 272
>pdb|2YH2|A Chain A, Pyrobaculum Calidifontis Esterase Monoclinic Form
pdb|2YH2|B Chain B, Pyrobaculum Calidifontis Esterase Monoclinic Form
pdb|2YH2|C Chain C, Pyrobaculum Calidifontis Esterase Monoclinic Form
pdb|2YH2|D Chain D, Pyrobaculum Calidifontis Esterase Monoclinic Form
pdb|3ZWQ|A Chain A, Hyperthermophilic Esterase From The Archeon Pyrobaculum
Calidifontis
pdb|3ZWQ|B Chain B, Hyperthermophilic Esterase From The Archeon Pyrobaculum
Calidifontis
Length = 313
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 66/162 (40%), Gaps = 11/162 (6%)
Query: 2 DALKFLDNNLEELPINVNPKWCFLAGDSAGGNLAHHVAVKAGEYNFSNLKMLGLI-SLQP 60
DA K++ +N ++L ++ N K +AGDSAGGNLA A+ A + S +K LI
Sbjct: 132 DAAKWVADNYDKLGVD-NGKIA-VAGDSAGGNLAAVTAIMARDRGESFVKYQVLIYPAVN 189
Query: 61 FFGGEERTESEIKNDRNPLLSLDFTDWYWKVFLPNGSNRDHP-AAHVFGPKSSVDVIPDT 119
G + E +L+ D W+ + + + P A+ +F S+
Sbjct: 190 LTGSPTVSRVEYSGPEYVILTADLMAWFGRQYFSKPQDALSPYASPIFADLSN------- 242
Query: 120 FPATLLFVGGLDLLKDWQMKYYEGLKQAGKEVYLVEDPKAFH 161
P L+ D L+D Y LK G V H
Sbjct: 243 LPPALVITAEYDPLRDEGELYAHLLKTRGVRAVAVRYNGVIH 284
>pdb|2HM7|A Chain A, Crystal Structure Analysis Of The G84s Est2 Mutant
Length = 310
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 60/150 (40%), Gaps = 7/150 (4%)
Query: 2 DALKFLDNNLEELPINVNPKWCFLAGDSAGGNLAHHVAVKAGEYNFSNLKMLGLISLQPF 61
DAL+++ + +++P + GDSAGGNLA ++ A E L LI
Sbjct: 130 DALQWIAERAADF--HLDPARIAVGGDSAGGNLAAVTSILAKERGGPALAFQLLIYPSTG 187
Query: 62 FGGEERTESEIKNDRNPLLSLDFTDWYWKVFLPNGSNRDHPAAHVFGPKSSVDVIPDTFP 121
+ S +N LL+ W+ +L + HP F P D+ P
Sbjct: 188 YDPAHPPASIEENAEGYLLTGGMMLWFRDQYLNSLEELTHP---WFSPVLYPDL--SGLP 242
Query: 122 ATLLFVGGLDLLKDWQMKYYEGLKQAGKEV 151
+ D L+D Y E L +AG +V
Sbjct: 243 PAYIATAQYDPLRDVGKLYAEALNKAGVKV 272
>pdb|1EVQ|A Chain A, The Crystal Structure Of The Thermophilic Carboxylesterase
Est2 From Alicyclobacillus Acidocaldarius
Length = 310
Score = 35.8 bits (81), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 60/150 (40%), Gaps = 7/150 (4%)
Query: 2 DALKFLDNNLEELPINVNPKWCFLAGDSAGGNLAHHVAVKAGEYNFSNLKMLGLISLQPF 61
DAL+++ + +++P + GDSAGGNLA ++ A E L LI
Sbjct: 130 DALQWIAERAADF--HLDPARIAVGGDSAGGNLAAVTSILAKERGGPALAFQLLIYPSTG 187
Query: 62 FGGEERTESEIKNDRNPLLSLDFTDWYWKVFLPNGSNRDHPAAHVFGPKSSVDVIPDTFP 121
+ S +N LL+ W+ +L + HP F P D+ P
Sbjct: 188 YDPAHPPASIEENAEGYLLTGGXXLWFRDQYLNSLEELTHP---WFSPVLYPDL--SGLP 242
Query: 122 ATLLFVGGLDLLKDWQMKYYEGLKQAGKEV 151
+ D L+D Y E L +AG +V
Sbjct: 243 PAYIATAQYDPLRDVGKLYAEALNKAGVKV 272
>pdb|2C7B|A Chain A, The Crystal Structure Of Este1, A New Thermophilic And
Thermostable Carboxylesterase Cloned From A Metagenomic
Library
pdb|2C7B|B Chain B, The Crystal Structure Of Este1, A New Thermophilic And
Thermostable Carboxylesterase Cloned From A Metagenomic
Library
Length = 311
Score = 34.3 bits (77), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 26/38 (68%), Gaps = 2/38 (5%)
Query: 3 ALKFLDNNLEELPINVNPKWCFLAGDSAGGNLAHHVAV 40
ALK++ + +EL V+P +AGDSAGGNLA V++
Sbjct: 130 ALKWVADRADEL--GVDPDRIAVAGDSAGGNLAAVVSI 165
>pdb|3K6K|A Chain A, Crystal Structure At 2.2 Angstrom Of Hsl-Homolog Este7
From A Metagenome Library
pdb|3K6K|B Chain B, Crystal Structure At 2.2 Angstrom Of Hsl-Homolog Este7
From A Metagenome Library
pdb|3K6K|C Chain C, Crystal Structure At 2.2 Angstrom Of Hsl-Homolog Este7
From A Metagenome Library
pdb|3K6K|D Chain D, Crystal Structure At 2.2 Angstrom Of Hsl-Homolog Este7
From A Metagenome Library
Length = 322
Score = 30.8 bits (68), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 67/163 (41%), Gaps = 21/163 (12%)
Query: 24 FLAGDSAGGNLAHHVAVKAGEYNFSNLKM-LGLISLQPFFGGEERTESEIKN----DRNP 78
+AGDSAGG L +KA E L M GL+ L PF + T S N DR+
Sbjct: 152 IIAGDSAGGGLTTASMLKAKE---DGLPMPAGLVMLSPFV---DLTLSRWSNSNLADRDF 205
Query: 79 LLSLDFTDWYWKVFLPNGSNRDHP-AAHVFGPKSSVDVIPDTFPATLLFVGGLDLLKDWQ 137
L D ++++ G +R +P + V+ S P L+ VG + L
Sbjct: 206 LAEPDTLGEMSELYV-GGEDRKNPLISPVYADLSG-------LPEMLIHVGSEEALLSDS 257
Query: 138 MKYYEGLKQAGKEVYLVEDPKAFHCSFMYKEFP-EYNLFVKEI 179
E AG V L P H MY +F ++ +KEI
Sbjct: 258 TTLAERAGAAGVSVELKIWPDMPHVFQMYGKFVNAADISIKEI 300
>pdb|3DNM|A Chain A, Crystal Structure Hormone-Sensitive Lipase From A
Metagenome Library
pdb|3DNM|B Chain B, Crystal Structure Hormone-Sensitive Lipase From A
Metagenome Library
pdb|3DNM|C Chain C, Crystal Structure Hormone-Sensitive Lipase From A
Metagenome Library
pdb|3DNM|D Chain D, Crystal Structure Hormone-Sensitive Lipase From A
Metagenome Library
Length = 336
Score = 30.8 bits (68), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 67/163 (41%), Gaps = 21/163 (12%)
Query: 24 FLAGDSAGGNLAHHVAVKAGEYNFSNLKM-LGLISLQPFFGGEERTESEIKN----DRNP 78
+AGDSAGG L +KA E L M GL+ L PF + T S N DR+
Sbjct: 166 IIAGDSAGGGLTTASMLKAKE---DGLPMPAGLVMLSPFV---DLTLSRWSNSNLADRDF 219
Query: 79 LLSLDFTDWYWKVFLPNGSNRDHP-AAHVFGPKSSVDVIPDTFPATLLFVGGLDLLKDWQ 137
L D ++++ G +R +P + V+ S P L+ VG + L
Sbjct: 220 LAEPDTLGEMSELYV-GGEDRKNPLISPVYADLSG-------LPEMLIHVGSEEALLSDS 271
Query: 138 MKYYEGLKQAGKEVYLVEDPKAFHCSFMYKEFP-EYNLFVKEI 179
E AG V L P H MY +F ++ +KEI
Sbjct: 272 TTLAERAGAAGVSVELKIWPDMPHVFQMYGKFVNAADISIKEI 314
>pdb|1J8Y|F Chain F, Signal Recognition Particle Conserved Gtpase Domain From
A. Ambivalens T112a Mutant
Length = 297
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/73 (23%), Positives = 34/73 (46%), Gaps = 8/73 (10%)
Query: 56 ISLQPFFGGEERTESEIKNDRNPLLSLDFTDWYWKVFLPNGSNRDHPAAHVFGPKSSVDV 115
++++ F + + +KN++ P ++ +W+ K+ SN +FG V
Sbjct: 41 VNVKLVFSLTNKIKERLKNEKPPTY-IERREWFIKIVYDELSN-------LFGGDKEPKV 92
Query: 116 IPDTFPATLLFVG 128
IPD P ++ VG
Sbjct: 93 IPDKIPYVIMLVG 105
>pdb|1J8M|F Chain F, Signal Recognition Particle Conserved Gtpase Domain From
A. Ambivalens
Length = 297
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/73 (23%), Positives = 34/73 (46%), Gaps = 8/73 (10%)
Query: 56 ISLQPFFGGEERTESEIKNDRNPLLSLDFTDWYWKVFLPNGSNRDHPAAHVFGPKSSVDV 115
++++ F + + +KN++ P ++ +W+ K+ SN +FG V
Sbjct: 41 VNVKLVFSLTNKIKERLKNEKPPTY-IERREWFIKIVYDELSN-------LFGGDKEPKV 92
Query: 116 IPDTFPATLLFVG 128
IPD P ++ VG
Sbjct: 93 IPDKIPYVIMLVG 105
>pdb|1NVM|A Chain A, Crystal Structure Of A Bifunctional Aldolase-Dehydrogenase
: Sequestering A Reactive And Volatile Intermediate
pdb|1NVM|C Chain C, Crystal Structure Of A Bifunctional Aldolase-Dehydrogenase
: Sequestering A Reactive And Volatile Intermediate
pdb|1NVM|E Chain E, Crystal Structure Of A Bifunctional Aldolase-Dehydrogenase
: Sequestering A Reactive And Volatile Intermediate
pdb|1NVM|G Chain G, Crystal Structure Of A Bifunctional Aldolase-Dehydrogenase
: Sequestering A Reactive And Volatile Intermediate
Length = 345
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 29/66 (43%)
Query: 1 MDALKFLDNNLEELPINVNPKWCFLAGDSAGGNLAHHVAVKAGEYNFSNLKMLGLISLQP 60
MDA + L++ P+ V+ + L + H + A +YN L +L + +
Sbjct: 261 MDAADDIVRPLQDRPVRVDRETLGLGYAGVYSSFLRHAEIAAAKYNLKTLDILVELGHRR 320
Query: 61 FFGGEE 66
GG+E
Sbjct: 321 MVGGQE 326
>pdb|3QH4|A Chain A, Crystal Structure Of Esterase Lipw From Mycobacterium
Marinum
Length = 317
Score = 28.1 bits (61), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 120 FPATLLFVGGLDLLKDWQMKYYEGLKQAGKEVYLVEDPKAFH 161
PATL+ G +D +D + Y + L AG L P+A H
Sbjct: 247 LPATLITCGEIDPFRDEVLDYAQRLLGAGVSTELHIFPRACH 288
>pdb|2O8E|A Chain A, Human Mutsalpha (Msh2MSH6) BOUND TO A G T MISPAIR, WITH
ADP BOUND TO Msh2 Only
Length = 934
Score = 28.1 bits (61), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 9 NNLEELPINVNPKWCFLAGDSAGGNL 34
+NLE L I + PK C L G G++
Sbjct: 185 SNLEALLIQIGPKECVLPGGETAGDM 210
>pdb|2O8B|A Chain A, Human Mutsalpha (Msh2MSH6) BOUND TO ADP AND A G T MISPAIR
pdb|2O8C|A Chain A, Human Mutsalpha (msh2/msh6) Bound To Adp And An
O6-methyl-guanine T Mispair
pdb|2O8D|A Chain A, Human Mutsalpha (Msh2MSH6) BOUND TO ADP AND A G DU MISPAIR
pdb|2O8F|A Chain A, Human Mutsalpha (Msh2MSH6) BOUND TO DNA WITH A SINGLE BASE
T INSERT
pdb|3THW|A Chain A, Human Mutsbeta Complexed With An Idl Of 4 Bases (Loop4)
And Adp
pdb|3THX|A Chain A, Human Mutsbeta Complexed With An Idl Of 3 Bases (Loop3)
And Adp
pdb|3THY|A Chain A, Human Mutsbeta Complexed With An Idl Of 2 Bases (Loop2)
And Adp
pdb|3THZ|A Chain A, Human Mutsbeta Complexed With An Idl Of 6 Bases (Loop6)
And Adp
Length = 934
Score = 28.1 bits (61), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 9 NNLEELPINVNPKWCFLAGDSAGGNL 34
+NLE L I + PK C L G G++
Sbjct: 185 SNLEALLIQIGPKECVLPGGETAGDM 210
>pdb|1RPX|A Chain A, D-Ribulose-5-Phosphate 3-Epimerase From Solanum Tuberosum
Chloroplasts
pdb|1RPX|B Chain B, D-Ribulose-5-Phosphate 3-Epimerase From Solanum Tuberosum
Chloroplasts
pdb|1RPX|C Chain C, D-Ribulose-5-Phosphate 3-Epimerase From Solanum Tuberosum
Chloroplasts
Length = 230
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 27 GDSAGGNLAHHVAVKAGEYNFSNLKMLGLISLQPFFGGEERTESEIK 73
G AG L + A EY + ++ ++S+ P FGG+ ES++K
Sbjct: 118 GAKAGVVLNPGTPLTAIEYVLDAVDLVLIMSVNPGFGGQSFIESQVK 164
>pdb|3HXK|A Chain A, Crystal Structure Of A Sugar Hydrolase (Yeeb) From
Lactococcus Lactis, Northeast Structural Genomics
Consortium Target Kr108
pdb|3HXK|B Chain B, Crystal Structure Of A Sugar Hydrolase (Yeeb) From
Lactococcus Lactis, Northeast Structural Genomics
Consortium Target Kr108
pdb|3HXK|C Chain C, Crystal Structure Of A Sugar Hydrolase (Yeeb) From
Lactococcus Lactis, Northeast Structural Genomics
Consortium Target Kr108
pdb|3HXK|D Chain D, Crystal Structure Of A Sugar Hydrolase (Yeeb) From
Lactococcus Lactis, Northeast Structural Genomics
Consortium Target Kr108
Length = 276
Score = 27.3 bits (59), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 12/42 (28%)
Query: 6 FLDNNLEELPI------------NVNPKWCFLAGDSAGGNLA 35
FL NLEE+ +NP+ FL G SAGG+LA
Sbjct: 92 FLSQNLEEVQAVFSLIHQNHKEWQINPEQVFLLGCSAGGHLA 133
>pdb|1IZ9|A Chain A, Crystal Structure Of Malate Dehydrogenase From Thermus
Thermophilus Hb8
pdb|1IZ9|B Chain B, Crystal Structure Of Malate Dehydrogenase From Thermus
Thermophilus Hb8
pdb|1Y7T|A Chain A, Crystal Structure Of Nad(H)-Depenent Malate Dehydrogenase
Complexed With Nadph
pdb|1Y7T|B Chain B, Crystal Structure Of Nad(H)-Depenent Malate Dehydrogenase
Complexed With Nadph
pdb|2CVQ|A Chain A, Crystal Structure Of Nad(H)-Dependent Malate Dehydrogenase
Complexed With Nadph
pdb|2CVQ|B Chain B, Crystal Structure Of Nad(H)-Dependent Malate Dehydrogenase
Complexed With Nadph
Length = 327
Score = 26.9 bits (58), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 75 DRNPLLSLDFTDWYWKVFLPNGSNR 99
D P L L +WY KVF+P + R
Sbjct: 201 DGRPALELVDMEWYEKVFIPTVAQR 225
>pdb|1BMD|A Chain A, Determinants Of Protein Thermostability Observed In The
1.9 Angstroms Crystal Structure Of Malate Dehydrogenase
From The Thermophilic Bacterium Thermus Flavus
pdb|1BMD|B Chain B, Determinants Of Protein Thermostability Observed In The
1.9 Angstroms Crystal Structure Of Malate Dehydrogenase
From The Thermophilic Bacterium Thermus Flavus
Length = 327
Score = 26.9 bits (58), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 75 DRNPLLSLDFTDWYWKVFLPNGSNR 99
D P L L +WY KVF+P + R
Sbjct: 201 DGRPALELVDMEWYEKVFIPTVAQR 225
>pdb|1BDM|A Chain A, The Structure At 1.8 Angstroms Resolution Of A Single Site
Mutant (T189i) Of Malate Dehydrogenase From Thermus
Flavus With Increased Enzymatic Activity
pdb|1BDM|B Chain B, The Structure At 1.8 Angstroms Resolution Of A Single Site
Mutant (T189i) Of Malate Dehydrogenase From Thermus
Flavus With Increased Enzymatic Activity
Length = 327
Score = 26.9 bits (58), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 75 DRNPLLSLDFTDWYWKVFLPNGSNR 99
D P L L +WY KVF+P + R
Sbjct: 201 DGRPALELVDMEWYEKVFIPTVAQR 225
>pdb|1WZE|A Chain A, Structural Basis For Alteration Of Cofactor Specificity Of
Malate Dehydrogenase From Thermus Flavus
pdb|1WZE|B Chain B, Structural Basis For Alteration Of Cofactor Specificity Of
Malate Dehydrogenase From Thermus Flavus
pdb|1WZI|A Chain A, Structural Basis For Alteration Of Cofactor Specificity Of
Malate Dehydrogenase From Thermus Flavus
pdb|1WZI|B Chain B, Structural Basis For Alteration Of Cofactor Specificity Of
Malate Dehydrogenase From Thermus Flavus
Length = 327
Score = 26.9 bits (58), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 75 DRNPLLSLDFTDWYWKVFLPNGSNR 99
D P L L +WY KVF+P + R
Sbjct: 201 DGRPALELVDMEWYEKVFIPTVAQR 225
>pdb|1QHO|A Chain A, Five-Domain Alpha-Amylase From Bacillus
Stearothermophilus, MaltoseACARBOSE COMPLEX
pdb|1QHP|A Chain A, Five-Domain Alpha-Amylase From Bacillus
Stearothermophilus, Maltose Complex
Length = 686
Score = 26.9 bits (58), Expect = 7.7, Method: Composition-based stats.
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 68 TESEIKNDRNPLLSLDFTDWYWKVFLPNG 96
T + N + PLL+ ++ DW++ +P G
Sbjct: 616 TSGAVNNAQGPLLAPNYPDWFYVFSVPAG 644
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.140 0.436
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,585,559
Number of Sequences: 62578
Number of extensions: 290159
Number of successful extensions: 609
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 583
Number of HSP's gapped (non-prelim): 34
length of query: 193
length of database: 14,973,337
effective HSP length: 93
effective length of query: 100
effective length of database: 9,153,583
effective search space: 915358300
effective search space used: 915358300
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)