BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029459
(193 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1SY7|A Chain A, Crystal Structure Of The Catalase-1 From Neurospora
Crassa, Native Structure At 1.75a Resolution.
pdb|1SY7|B Chain B, Crystal Structure Of The Catalase-1 From Neurospora
Crassa, Native Structure At 1.75a Resolution
Length = 715
Score = 30.0 bits (66), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 40/186 (21%), Positives = 72/186 (38%), Gaps = 28/186 (15%)
Query: 4 RFKMYNSFGFKSLAAML--------LFFILSISISYRASAETTMHTNNWAVLVCTSRFWF 55
+FK+Y S ++A +L +F S + R SA+T +AV T
Sbjct: 80 KFKVYESASDLTMAPVLTDTSRETPVFVRFSTVLGSRGSADTVRDVRGFAVKFYTEEG-- 137
Query: 56 NYRHMANTLSLYRTVKRLGVPDERIILMLADDMACNARNKYPAQVFNNENHKLNLYGDNV 115
N+ + N + ++ + PD + N+ P Q + N+ + ++
Sbjct: 138 NWDLVGNNIPVFFIQDAIKFPD------VIHAGKPEPHNEVP-QAQSAHNNFWDFQFNHT 190
Query: 116 EVDYHGYEVNAENFLRVLTGRHKAAVPRSKRLLSDEGSHILLYMTGHGGDEFLKFQDSEE 175
E + F ++ R A+PRS R++ G + + G F+KF + E
Sbjct: 191 EATHM--------FTWAMSDR---AIPRSLRMMQGFGVNTYTLINAQGKRHFVKFHWTPE 239
Query: 176 LQSHDL 181
L H L
Sbjct: 240 LGVHSL 245
>pdb|1PFK|A Chain A, Crystal Structure Of The Complex Of Phosphofructokinase
From Escherichia Coli With Its Reaction Products
pdb|1PFK|B Chain B, Crystal Structure Of The Complex Of Phosphofructokinase
From Escherichia Coli With Its Reaction Products
pdb|2PFK|A Chain A, The Crystal Structure Of Unliganded Phosphofructokinase
From Escherichia Coli
pdb|2PFK|B Chain B, The Crystal Structure Of Unliganded Phosphofructokinase
From Escherichia Coli
pdb|2PFK|C Chain C, The Crystal Structure Of Unliganded Phosphofructokinase
From Escherichia Coli
pdb|2PFK|D Chain D, The Crystal Structure Of Unliganded Phosphofructokinase
From Escherichia Coli
Length = 320
Score = 30.0 bits (66), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Query: 136 RHKAAVPRSKRLLSDEGSH-ILLYMTGHGGDEFLKFQDSEELQSHDLADAVKQMK 189
R + VP + L S G++ I L + G+GG + Q+ E+L HD+ DA++ MK
Sbjct: 253 RGGSPVPYDRILASRMGAYAIDLLLAGYGG-RCVGIQN-EQLVHHDIIDAIENMK 305
>pdb|2HQ2|A Chain A, Structure Of The Escherichia Coli O157:h7 Heme Oxygenase
Chus In Complex With Heme
Length = 354
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/53 (24%), Positives = 25/53 (47%)
Query: 57 YRHMANTLSLYRTVKRLGVPDERIILMLADDMACNARNKYPAQVFNNENHKLN 109
+R M + + +KR + ++ ++ADD+AC N AQ+ + N
Sbjct: 198 WRAMTDVHQFFTLLKRHNLTRQQAFNLVADDLACKVSNSALAQILESAQQDGN 250
>pdb|1U9T|A Chain A, Crystal Structure Analysis Of Chus, An E. Coli Heme
Oxygenase
Length = 354
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/53 (24%), Positives = 25/53 (47%)
Query: 57 YRHMANTLSLYRTVKRLGVPDERIILMLADDMACNARNKYPAQVFNNENHKLN 109
+R M + + +KR + ++ ++ADD+AC N AQ+ + N
Sbjct: 198 WRAMTDVHQFFTLLKRHNLTRQQAFNLVADDLACKVSNSALAQILESAQQDGN 250
>pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|B Chain B, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|C Chain C, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|D Chain D, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|E Chain E, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|F Chain F, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|G Chain G, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|H Chain H, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|I Chain I, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|J Chain J, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
Length = 617
Score = 28.9 bits (63), Expect = 1.9, Method: Composition-based stats.
Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 7/73 (9%)
Query: 100 VFNNENHKLNLYGDNVE-----VDYHGYEVNAENFLRVLTGRHKAAVPRSKRLLSDEGSH 154
+F+++ +LN Y +E D + ++FL H + R +LL+D G H
Sbjct: 106 LFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSI--RVVQLLNDSGEH 163
Query: 155 ILLYMTGHGGDEF 167
L H ++F
Sbjct: 164 NLQDAINHPAEDF 176
>pdb|1QYC|A Chain A, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
pdb|1QYC|B Chain B, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
Length = 308
Score = 28.1 bits (61), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 20/81 (24%)
Query: 58 RHMANTLSLY-----------RTVKRLGVPDERIILMLADDMACNARNKYPAQVFNNENH 106
R ANTLSL +T+++ VP+E ++ ++AD +PA + +H
Sbjct: 216 RLPANTLSLNELVALWEKKIDKTLEKAYVPEEEVLKLIAD-------TPFPANISIAISH 268
Query: 107 KLNLYGD--NVEVDYHGYEVN 125
+ + GD N E+ G E +
Sbjct: 269 SIFVKGDQTNFEIGPAGVEAS 289
>pdb|4DFE|A Chain A, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Synthase Iii From Burkholderia Xenovorans
pdb|4DFE|B Chain B, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Synthase Iii From Burkholderia Xenovorans
pdb|4DFE|C Chain C, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Synthase Iii From Burkholderia Xenovorans
pdb|4DFE|D Chain D, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Synthase Iii From Burkholderia Xenovorans
Length = 333
Score = 27.7 bits (60), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 59 HMANTLSLYRTVKRLGVPDERIILMLAD 86
H AN + T ++LG+P ER+I+ + +
Sbjct: 260 HQANIRIMQSTCRKLGLPQERMIVTVGE 287
>pdb|2Y0E|A Chain A, Bcec And The Final Step Of Ugds Reaction
pdb|2Y0E|B Chain B, Bcec And The Final Step Of Ugds Reaction
pdb|2Y0E|C Chain C, Bcec And The Final Step Of Ugds Reaction
pdb|2Y0E|D Chain D, Bcec And The Final Step Of Ugds Reaction
Length = 478
Score = 27.3 bits (59), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 44/107 (41%), Gaps = 14/107 (13%)
Query: 76 PDERIILMLADDMACNARNKYPAQVFN--NENHKLNLYGDNVEVDYHGYEVNAENFLRV- 132
PD RI++ DD+ + +++ N NH+ LY D ++ Y NA R+
Sbjct: 176 PD-RIVIGCDDDVPGERARELMKKLYAPFNRNHERTLYMDVRSAEFTKYAANAMLATRIS 234
Query: 133 -------LTGRHKAAVPRSKRLLSDE---GSHILLYMTGHGGDEFLK 169
L R A + +R + + G H L G+GG F K
Sbjct: 235 FMNELANLADRFGADIEAVRRGIGSDPRIGYHFLYAGCGYGGSCFPK 281
>pdb|2Y0C|A Chain A, Bcec Mutation Y10s
pdb|2Y0C|B Chain B, Bcec Mutation Y10s
pdb|2Y0C|C Chain C, Bcec Mutation Y10s
pdb|2Y0C|D Chain D, Bcec Mutation Y10s
Length = 478
Score = 27.3 bits (59), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 44/107 (41%), Gaps = 14/107 (13%)
Query: 76 PDERIILMLADDMACNARNKYPAQVFN--NENHKLNLYGDNVEVDYHGYEVNAENFLRV- 132
PD RI++ DD+ + +++ N NH+ LY D ++ Y NA R+
Sbjct: 176 PD-RIVIGCDDDVPGERARELMKKLYAPFNRNHERTLYMDVRSAEFTKYAANAMLATRIS 234
Query: 133 -------LTGRHKAAVPRSKRLLSDE---GSHILLYMTGHGGDEFLK 169
L R A + +R + + G H L G+GG F K
Sbjct: 235 FMNELANLADRFGADIEAVRRGIGSDPRIGYHFLYAGCGYGGSCFPK 281
>pdb|2Y0D|A Chain A, Bcec Mutation Y10k
pdb|2Y0D|B Chain B, Bcec Mutation Y10k
pdb|2Y0D|C Chain C, Bcec Mutation Y10k
pdb|2Y0D|D Chain D, Bcec Mutation Y10k
Length = 478
Score = 27.3 bits (59), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 44/107 (41%), Gaps = 14/107 (13%)
Query: 76 PDERIILMLADDMACNARNKYPAQVFN--NENHKLNLYGDNVEVDYHGYEVNAENFLRV- 132
PD RI++ DD+ + +++ N NH+ LY D ++ Y NA R+
Sbjct: 176 PD-RIVIGCDDDVPGERARELMKKLYAPFNRNHERTLYMDVRSAEFTKYAANAMLATRIS 234
Query: 133 -------LTGRHKAAVPRSKRLLSDE---GSHILLYMTGHGGDEFLK 169
L R A + +R + + G H L G+GG F K
Sbjct: 235 FMNELANLADRFGADIEAVRRGIGSDPRIGYHFLYAGCGYGGSCFPK 281
>pdb|3PHS|A Chain A, Crystal Structure Of Gbs52, The Minor Pilin In
Gram-Positive Pathogen Streptococcus Agalactiae
Length = 249
Score = 26.9 bits (58), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 122 YEVNAENFLRVLTGRHKAAVPRSKRLLSDEGSHILLYMTGHG 163
YE N +RV G H + +K L +D HI + HG
Sbjct: 161 YEKNGRTPIRVKNGVHSQDIDAAKHLETDSSGHIRISGLIHG 202
>pdb|3SSZ|A Chain A, The Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING Enzyme From Rhodobacteraceae Bacterium
Length = 413
Score = 26.6 bits (57), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 118 DYHGY-EVNAENFLRVLTGRHKAAVPRSKRLLSDEGSHILLYMTGHGG 164
D GY E+NA N + + G H+ +V K L+ + +L Y T G
Sbjct: 270 DVEGYRELNAMNIVPISGGEHEFSVIGCKDLIEKKAVSVLQYDTNRVG 317
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.135 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,475,816
Number of Sequences: 62578
Number of extensions: 208822
Number of successful extensions: 670
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 665
Number of HSP's gapped (non-prelim): 15
length of query: 193
length of database: 14,973,337
effective HSP length: 93
effective length of query: 100
effective length of database: 9,153,583
effective search space: 915358300
effective search space used: 915358300
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 49 (23.5 bits)