BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029460
(193 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1UMZ|A Chain A, Xyloglucan Endotransglycosylase In Complex With The
Xyloglucan Nonasaccharide Xllg.
pdb|1UMZ|B Chain B, Xyloglucan Endotransglycosylase In Complex With The
Xyloglucan Nonasaccharide Xllg.
pdb|1UN1|A Chain A, Xyloglucan Endotransglycosylase Native Structure.
pdb|1UN1|B Chain B, Xyloglucan Endotransglycosylase Native Structure
Length = 278
Score = 246 bits (629), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 113/190 (59%), Positives = 136/190 (71%), Gaps = 3/190 (1%)
Query: 3 SNTENVRDELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNH 62
S+ + DE+DFEFLGNRTGQPY +QTN++ GKGDREQR+ LWFDP ++H Y++LWN
Sbjct: 83 SSQNSEHDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTKEFHYYSVLWNM 142
Query: 63 HHIVFYVDDVPIRVYKNSGR--APFPMNQPMGVYSTLWEADDWATRGGLEKIDWSKAPFY 120
+ IVF VDDVPIRV+KN FP NQPM +YS+LW ADDWATRGGLEK DWSKAPF
Sbjct: 143 YMIVFLVDDVPIRVFKNCKDLGVKFPFNQPMKIYSSLWNADDWATRGGLEKTDWSKAPFI 202
Query: 121 AYYRDFDIEGCPVPGPAN-CASNPGNWWEANNYQALTAMEARRYRWVRLNHMIYDYCTDK 179
A YR F I+GC A CA+ WW+ +Q L A + RR WVR + IY+YCTD+
Sbjct: 203 ASYRSFHIDGCEASVEAKFCATQGARWWDQKEFQDLDAFQYRRLSWVRQKYTIYNYCTDR 262
Query: 180 SRYPVPPPEC 189
SRYP PPEC
Sbjct: 263 SRYPSMPPEC 272
>pdb|2VH9|A Chain A, Crystal Structure Of Nxg1-Deltayniig In Complex With Xllg,
A Xyloglucan Derived Oligosaccharide
pdb|2VH9|B Chain B, Crystal Structure Of Nxg1-Deltayniig In Complex With Xllg,
A Xyloglucan Derived Oligosaccharide
Length = 290
Score = 163 bits (413), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 80/188 (42%), Positives = 109/188 (57%), Gaps = 6/188 (3%)
Query: 2 NSNTENVRDELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWN 61
N + DE+D EFLG G+PYT+QTN++ G GDRE R++LWFDP DYH Y I W
Sbjct: 109 NQDYPGKHDEIDIEFLGTIPGKPYTLQTNVFIEGSGDREMRIHLWFDPTQDYHNYAIYWT 168
Query: 62 HHHIVFYVDDVPIRVYKNSGRAPFPMNQPMGVYSTLWEADDWATRGGLEKIDWSKAPFYA 121
I+F+VDDVPIR Y A FP+ +P+ VY ++W+A WAT G K D+ PF
Sbjct: 169 PSEIIFFVDDVPIRRYPRKSDATFPL-RPLWVYGSVWDASSWATENGKYKADYRYQPFVG 227
Query: 122 YYRDFDIEGCPVPGPANCASNPGNWWEANNYQALTAMEARRYRWVRLNHMIYDYCTDKSR 181
Y DF + C V ++C NP + + Y L+ + WV+ N+M+Y+YC D +R
Sbjct: 228 KYEDFKLGSCTVEAASSC--NPAS---VSPYGQLSQQQVAAMEWVQKNYMVYNYCDDPTR 282
Query: 182 YPVPPPEC 189
PEC
Sbjct: 283 DHTLTPEC 290
>pdb|2UWB|A Chain A, Crystal Structure Of The Nasturtium Seedling Mutant
Xyloglucanase Isoform Nxg1-Delta-Yniig
pdb|2UWB|B Chain B, Crystal Structure Of The Nasturtium Seedling Mutant
Xyloglucanase Isoform Nxg1-Delta-Yniig
Length = 267
Score = 163 bits (413), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 80/188 (42%), Positives = 109/188 (57%), Gaps = 6/188 (3%)
Query: 2 NSNTENVRDELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWN 61
N + DE+D EFLG G+PYT+QTN++ G GDRE R++LWFDP DYH Y I W
Sbjct: 86 NQDYPGKHDEIDIEFLGTIPGKPYTLQTNVFIEGSGDREMRIHLWFDPTQDYHNYAIYWT 145
Query: 62 HHHIVFYVDDVPIRVYKNSGRAPFPMNQPMGVYSTLWEADDWATRGGLEKIDWSKAPFYA 121
I+F+VDDVPIR Y A FP+ +P+ VY ++W+A WAT G K D+ PF
Sbjct: 146 PSEIIFFVDDVPIRRYPRKSDATFPL-RPLWVYGSVWDASSWATENGKYKADYRYQPFVG 204
Query: 122 YYRDFDIEGCPVPGPANCASNPGNWWEANNYQALTAMEARRYRWVRLNHMIYDYCTDKSR 181
Y DF + C V ++C NP + + Y L+ + WV+ N+M+Y+YC D +R
Sbjct: 205 KYEDFKLGSCTVEAASSC--NPAS---VSPYGQLSQQQVAAMEWVQKNYMVYNYCDDPTR 259
Query: 182 YPVPPPEC 189
PEC
Sbjct: 260 DHTLTPEC 267
>pdb|2UWC|A Chain A, Crystal Structure Of Nasturtium Xyloglucan Hydrolase
Isoform Nxg2
pdb|2UWC|B Chain B, Crystal Structure Of Nasturtium Xyloglucan Hydrolase
Isoform Nxg2
Length = 271
Score = 157 bits (398), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 81/193 (41%), Positives = 109/193 (56%), Gaps = 11/193 (5%)
Query: 2 NSNTENVRDELDFEFLGNRTGQPYTVQTNIYANGKGD-----REQRVNLWFDPAADYHLY 56
N + DE+D EFLG G+PYT+QTN++ G GD RE R++LWFDP DYH Y
Sbjct: 85 NQDYPGKHDEIDIEFLGTIPGKPYTLQTNVFIEGSGDYNIIGRELRIHLWFDPTQDYHNY 144
Query: 57 TILWNHHHIVFYVDDVPIRVYKNSGRAPFPMNQPMGVYSTLWEADDWATRGGLEKIDWSK 116
I W I+F+VDDVPIR Y A FP+ +PM VY ++W+A WAT G K D+
Sbjct: 145 AIYWTPSEIIFFVDDVPIRRYPRKSDATFPL-RPMWVYGSVWDASSWATENGKYKADYRY 203
Query: 117 APFYAYYRDFDIEGCPVPGPANCASNPGNWWEANNYQALTAMEARRYRWVRLNHMIYDYC 176
PF Y DF + C V ++C NP + + Y L+ + WV+ N+M+Y+YC
Sbjct: 204 QPFVGKYEDFKLGSCTVEAASSC--NPAS---VSPYGQLSQQQVAAMEWVQKNYMVYNYC 258
Query: 177 TDKSRYPVPPPEC 189
D +R PEC
Sbjct: 259 DDPTRDHTLTPEC 271
>pdb|2UWA|A Chain A, Crystal Structure Of The Nasturtium Seedling Xyloglucanase
Isoform Nxg1
pdb|2UWA|B Chain B, Crystal Structure Of The Nasturtium Seedling Xyloglucanase
Isoform Nxg1
pdb|2UWA|C Chain C, Crystal Structure Of The Nasturtium Seedling Xyloglucanase
Isoform Nxg1
Length = 274
Score = 157 bits (396), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 80/193 (41%), Positives = 109/193 (56%), Gaps = 11/193 (5%)
Query: 2 NSNTENVRDELDFEFLGNRTGQPYTVQTNIYANGKGD-----REQRVNLWFDPAADYHLY 56
N + DE+D EFLG G+PYT+QTN++ G GD RE R++LWFDP DYH Y
Sbjct: 88 NQDYPGKHDEIDIEFLGTIPGKPYTLQTNVFIEGSGDYNIIGREMRIHLWFDPTQDYHNY 147
Query: 57 TILWNHHHIVFYVDDVPIRVYKNSGRAPFPMNQPMGVYSTLWEADDWATRGGLEKIDWSK 116
I W I+F+VDDVPIR Y A FP+ +P+ VY ++W+A WAT G K D+
Sbjct: 148 AIYWTPSEIIFFVDDVPIRRYPRKSDATFPL-RPLWVYGSVWDASSWATENGKYKADYRY 206
Query: 117 APFYAYYRDFDIEGCPVPGPANCASNPGNWWEANNYQALTAMEARRYRWVRLNHMIYDYC 176
PF Y DF + C V ++C NP + + Y L+ + WV+ N+M+Y+YC
Sbjct: 207 QPFVGKYEDFKLGSCTVEAASSC--NPAS---VSPYGQLSQQQVAAMEWVQKNYMVYNYC 261
Query: 177 TDKSRYPVPPPEC 189
D +R PEC
Sbjct: 262 DDPTRDHTLTPEC 274
>pdb|3D6E|A Chain A, Crystal Structure Of The Engineered 1,3-1,4-Beta-Glucanase
Protein From Bacillus Licheniformis
pdb|3D6E|B Chain B, Crystal Structure Of The Engineered 1,3-1,4-Beta-Glucanase
Protein From Bacillus Licheniformis
Length = 201
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 56/117 (47%), Gaps = 17/117 (14%)
Query: 10 DELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYV 69
DE+D EFLG T + VQ N Y NG G+ E+ VNL FD A YH Y W + I +YV
Sbjct: 91 DEIDIEFLGKDTTK---VQFNYYTNGVGNHEKIVNLGFDAANSYHTYAFDWQPNSIKWYV 147
Query: 70 DDVPIRVYKNSGRAPFPMNQPMGVYSTLWEA---DDWATRGGLEKIDWSKAPFYAYY 123
D K++ P P +Y +LW D+W G + P YA+Y
Sbjct: 148 DG----QLKHTATTQIPQT-PGKIYMSLWAGAGVDEWL--GSYNGV----TPLYAHY 193
>pdb|1GBG|A Chain A, Bacillus Licheniformis Beta-Glucanase
Length = 214
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 54/117 (46%), Gaps = 17/117 (14%)
Query: 10 DELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYV 69
DE+D EFLG T + VQ N Y NG G+ E+ VNL FD A YH Y W + I +YV
Sbjct: 104 DEIDIEFLGKDTTK---VQFNYYTNGVGNHEKIVNLGFDAANSYHTYAFDWQPNSIKWYV 160
Query: 70 DDVPIRVYKNSGRAPFPMNQPMGVYSTLWEA---DDWATRGGLEKIDWSKAPFYAYY 123
D K++ P P + LW D+W G + P YA+Y
Sbjct: 161 DG----QLKHTATTQIPQ-TPGKIMMNLWNGAGVDEWL--GSYNGV----TPLYAHY 206
>pdb|1AXK|A Chain A, Engineered Bacillus Bifunctional Enzyme Gluxyn-1
pdb|1AXK|B Chain B, Engineered Bacillus Bifunctional Enzyme Gluxyn-1
Length = 394
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 49/97 (50%), Gaps = 11/97 (11%)
Query: 10 DELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYV 69
DE+D EFLG T + VQ N Y NG G E+ ++L FD + +H Y W +I +YV
Sbjct: 46 DEIDIEFLGKDTTK---VQFNYYTNGVGGHEKVISLGFDASKGFHTYAFDWQPGYIKWYV 102
Query: 70 DDVPIRVYKNSGRAPFPMNQPMGVYSTLWEA---DDW 103
D V K++ A P + P + LW DDW
Sbjct: 103 DG----VLKHTATANIP-STPGKIMMNLWNGTGVDDW 134
>pdb|1CPN|A Chain A, Native-Like In Vivo Folding Of A Circularly Permuted
Jellyroll Protein Shown By Crystal Structure Analysis
Length = 208
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 49/97 (50%), Gaps = 11/97 (11%)
Query: 10 DELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYV 69
DE+D EFLG T + VQ N Y NG G E+ ++L FD + +H Y W +I +YV
Sbjct: 46 DEIDIEFLGKDTTK---VQFNYYTNGVGGHEKVISLGFDASKGFHTYAFDWQPGYIKWYV 102
Query: 70 DDVPIRVYKNSGRAPFPMNQPMGVYSTLWEA---DDW 103
D V K++ A P + P + LW DDW
Sbjct: 103 DG----VLKHTATANIP-STPGKIMMNLWNGTGVDDW 134
>pdb|1MAC|A Chain A, Crystal Structure And Site-Directed Mutagenesis Of
Bacillus Macerans Endo-1,3-1,4-Beta-Glucanase
pdb|1MAC|B Chain B, Crystal Structure And Site-Directed Mutagenesis Of
Bacillus Macerans Endo-1,3-1,4-Beta-Glucanase
Length = 212
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 49/97 (50%), Gaps = 11/97 (11%)
Query: 10 DELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYV 69
DE+D EFLG T + VQ N Y NG G E+ ++L FD + +H Y W +I +YV
Sbjct: 102 DEIDIEFLGKDTTK---VQFNYYTNGVGGHEKVISLGFDASKGFHTYAFDWQPGYIKWYV 158
Query: 70 DDVPIRVYKNSGRAPFPMNQPMGVYSTLWEA---DDW 103
D V K++ A P + P + LW DDW
Sbjct: 159 DG----VLKHTATANIP-STPGKIMMNLWNGTGVDDW 190
>pdb|1CPM|A Chain A, Native-Like In Vivo Folding Of A Circularly Permuted
Jellyroll Protein Shown By Crystal Structure Analysis
Length = 214
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 49/97 (50%), Gaps = 11/97 (11%)
Query: 10 DELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYV 69
DE+D EFLG T + VQ N Y NG G E+ ++L FD + +H Y W +I +YV
Sbjct: 46 DEIDIEFLGKDTTK---VQFNYYTNGVGGHEKVISLGFDASKGFHTYAFDWQPGYIKWYV 102
Query: 70 DDVPIRVYKNSGRAPFPMNQPMGVYSTLWEA---DDW 103
D V K++ A P + P + LW DDW
Sbjct: 103 DG----VLKHTATANIP-STPGKIMMNLWNGTGVDDW 134
>pdb|1AJK|A Chain A, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4-
Glucanohydrolase Cpa16m-84
pdb|1AJK|B Chain B, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4-
Glucanohydrolase Cpa16m-84
Length = 214
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 49/97 (50%), Gaps = 11/97 (11%)
Query: 10 DELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYV 69
DE+D EFLG T + VQ N Y NG G E+ ++L FD + +H Y W +I +YV
Sbjct: 21 DEIDIEFLGKDTTK---VQFNYYTNGVGGHEKVISLGFDASKGFHTYAFDWQPGYIKWYV 77
Query: 70 DDVPIRVYKNSGRAPFPMNQPMGVYSTLWEA---DDW 103
D V K++ A P + P + LW DDW
Sbjct: 78 DG----VLKHTATANIP-STPGKIMMNLWNGTGVDDW 109
>pdb|1BYH|A Chain A, Molecular And Active-Site Structure Of A Bacillus
(1-3,1-4)- Beta-Glucanase
pdb|1GLH|A Chain A, Cation Binding To A Bacillus (1,3-1,4)-Beta-Glucanase.
Geometry, Affinity And Effect On Protein Stability
pdb|2AYH|A Chain A, Crystal And Molecular Structure At 1.6 Angstroms
Resolution Of The Hybrid Bacillus
Endo-1,3-1,4-Beta-D-Glucan 4- Glucanohydrolase H(A16-M)
Length = 214
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 49/97 (50%), Gaps = 11/97 (11%)
Query: 10 DELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYV 69
DE+D EFLG T + VQ N Y NG G E+ ++L FD + +H Y W +I +YV
Sbjct: 104 DEIDIEFLGKDTTK---VQFNYYTNGVGGHEKVISLGFDASKGFHTYAFDWQPGYIKWYV 160
Query: 70 DDVPIRVYKNSGRAPFPMNQPMGVYSTLWEA---DDW 103
D V K++ A P + P + LW DDW
Sbjct: 161 DG----VLKHTATANIP-STPGKIMMNLWNGTGVDDW 192
>pdb|3O5S|A Chain A, Crystal Structure Of The Endo-Beta-1,3-1,4 Glucanase From
Bacillus Subtilis (Strain 168)
Length = 238
Score = 53.1 bits (126), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 36/61 (59%), Gaps = 3/61 (4%)
Query: 10 DELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYV 69
DE+D EFLG T + VQ N Y NG G+ E+ V+L FD A YH Y W + I +YV
Sbjct: 128 DEIDIEFLGKDTTK---VQFNYYTNGAGNHEKIVDLGFDAANAYHTYAFDWQPNSIKWYV 184
Query: 70 D 70
D
Sbjct: 185 D 185
>pdb|1U0A|A Chain A, Crystal Structure Of The Engineered
Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With
Beta-Glucan Tetrasaccharide
pdb|1U0A|B Chain B, Crystal Structure Of The Engineered
Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With
Beta-Glucan Tetrasaccharide
pdb|1U0A|C Chain C, Crystal Structure Of The Engineered
Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With
Beta-Glucan Tetrasaccharide
pdb|1U0A|D Chain D, Crystal Structure Of The Engineered
Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With
Beta-Glucan Tetrasaccharide
Length = 214
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 49/97 (50%), Gaps = 11/97 (11%)
Query: 10 DELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYV 69
D++D +FLG T + VQ N Y NG G E+ ++L FD + +H Y W +I +YV
Sbjct: 104 DQIDIQFLGKDTTK---VQFNYYTNGVGGHEKVISLGFDASKGFHTYAFDWQPGYIKWYV 160
Query: 70 DDVPIRVYKNSGRAPFPMNQPMGVYSTLWEA---DDW 103
D V K++ A P + P + LW DDW
Sbjct: 161 DG----VLKHTATANIP-STPGKIMMNLWNGTGVDDW 192
>pdb|3I4I|A Chain A, Crystal Structure Of A Prokaryotic Beta-1,3-1,4-Glucanase
(Lichenase) Derived From A Mouse Hindgut Metagenome
pdb|3I4I|B Chain B, Crystal Structure Of A Prokaryotic Beta-1,3-1,4-Glucanase
(Lichenase) Derived From A Mouse Hindgut Metagenome
Length = 234
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Query: 10 DELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYV 69
DE+D EFLG T + VQ N Y N G+ E +L FD + D+H+Y W ++I + V
Sbjct: 124 DEIDIEFLGKDTTK---VQFNYYTNSAGNHEYIYDLRFDASEDFHIYAFNWQPNYIAWLV 180
Query: 70 D 70
D
Sbjct: 181 D 181
>pdb|1AJO|A Chain A, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4-
Glucanohydrolase Cpa16m-127
pdb|1AJO|B Chain B, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4-
Glucanohydrolase Cpa16m-127
Length = 214
Score = 34.3 bits (77), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 8/70 (11%)
Query: 37 GDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKNSGRAPFPMNQPMGVYST 96
G E+ ++L FD + +H Y W +I +YVD V K++ A P + P +
Sbjct: 2 GGHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDG----VLKHTATANIP-STPGKIMMN 56
Query: 97 LWEA---DDW 103
LW DDW
Sbjct: 57 LWNGTGVDDW 66
>pdb|1UPS|A Chain A, Glcnac[alpha]1-4gal Releasing Endo-[beta]-Galactosidase
From Clostridium Perfringens
pdb|1UPS|B Chain B, Glcnac[alpha]1-4gal Releasing Endo-[beta]-Galactosidase
From Clostridium Perfringens
Length = 420
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 48 DPAADYHLYTILWNHHHIVFYVDDVPIRVYKNSGRAPFPMNQPMGVYS 95
DP ++YH+Y + W + FY D+ +V G + M + +Y+
Sbjct: 209 DPTSEYHIYAMEWTPTALKFYYDNELFKVI--YGSPDYEMGTILNIYT 254
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.474
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,409,628
Number of Sequences: 62578
Number of extensions: 332863
Number of successful extensions: 590
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 548
Number of HSP's gapped (non-prelim): 21
length of query: 193
length of database: 14,973,337
effective HSP length: 93
effective length of query: 100
effective length of database: 9,153,583
effective search space: 915358300
effective search space used: 915358300
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)