Query 029461
Match_columns 193
No_of_seqs 244 out of 1323
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 13:17:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029461.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029461hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03161 Probable xyloglucan e 100.0 5.5E-68 1.2E-72 460.4 22.8 191 1-192 92-289 (291)
2 cd02176 GH16_XET Xyloglucan en 100.0 1.4E-67 3.1E-72 453.7 23.3 187 2-189 72-263 (263)
3 cd02183 GH16_fungal_CRH1_trans 100.0 3.3E-31 7.2E-36 220.6 16.8 114 9-130 73-201 (203)
4 cd02175 GH16_lichenase lichena 99.9 5E-26 1.1E-30 189.4 16.6 112 6-129 97-211 (212)
5 cd02178 GH16_beta_agarase Beta 99.9 1.9E-23 4.2E-28 178.8 15.1 121 6-129 124-257 (258)
6 PF00722 Glyco_hydro_16: Glyco 99.9 1.2E-22 2.7E-27 163.8 13.8 107 6-127 75-185 (185)
7 cd08023 GH16_laminarinase_like 99.9 2.2E-22 4.8E-27 168.9 15.2 114 9-129 113-235 (235)
8 cd00413 Glyco_hydrolase_16 gly 99.9 4.4E-22 9.5E-27 163.3 15.5 107 9-128 98-209 (210)
9 PF06955 XET_C: Xyloglucan end 99.9 7.1E-23 1.5E-27 135.9 4.5 50 139-189 1-51 (51)
10 cd02182 GH16_Strep_laminarinas 99.8 2.7E-20 5.8E-25 159.5 13.6 114 9-129 128-258 (259)
11 cd02180 GH16_fungal_KRE6_gluca 99.8 1.6E-19 3.4E-24 158.2 14.4 76 49-129 206-294 (295)
12 cd02177 GH16_kappa_carrageenas 99.8 1.9E-19 4.1E-24 155.9 14.5 114 6-129 128-268 (269)
13 cd08024 GH16_CCF Coelomic cyto 99.7 1.3E-17 2.9E-22 148.0 13.1 96 9-104 148-279 (330)
14 cd02179 GH16_beta_GRP beta-1,3 99.7 1.1E-16 2.3E-21 141.8 11.8 93 9-101 146-268 (321)
15 COG2273 SKN1 Beta-glucanase/Be 99.6 4.7E-15 1E-19 132.9 12.8 95 5-104 147-242 (355)
16 PF03935 SKN1: Beta-glucan syn 99.0 2.3E-09 4.9E-14 99.7 9.4 85 50-141 365-464 (504)
17 cd02181 GH16_fungal_Lam16A_glu 96.5 0.0093 2E-07 52.7 7.4 54 50-104 178-251 (293)
18 PF13385 Laminin_G_3: Concanav 93.9 0.33 7E-06 36.1 7.3 66 49-130 83-148 (157)
19 PF09264 Sial-lect-inser: Vibr 90.6 0.5 1.1E-05 39.3 4.8 28 51-78 92-121 (198)
20 cd00152 PTX Pentraxins are pla 89.5 4.9 0.00011 32.9 10.0 71 49-128 88-160 (201)
21 smart00560 LamGL LamG-like jel 89.1 4.5 9.7E-05 30.8 8.9 70 48-132 58-129 (133)
22 smart00159 PTX Pentraxin / C-r 89.1 5.8 0.00013 32.7 10.1 70 49-128 88-160 (206)
23 PF06439 DUF1080: Domain of Un 83.3 3.1 6.6E-05 32.8 5.4 33 48-80 124-156 (185)
24 PF09224 DUF1961: Domain of un 79.9 8.4 0.00018 32.8 7.0 59 51-128 159-218 (218)
25 cd00110 LamG Laminin G domain; 78.4 11 0.00023 28.2 6.8 72 50-128 79-150 (151)
26 smart00210 TSPN Thrombospondin 70.6 29 0.00063 27.9 7.8 30 49-78 115-144 (184)
27 PF00354 Pentaxin: Pentaxin fa 70.5 58 0.0013 26.7 9.7 86 49-165 82-169 (195)
28 PF10287 DUF2401: Putative TOS 57.7 41 0.0009 29.0 6.6 51 6-62 149-206 (235)
29 PF06832 BiPBP_C: Penicillin-B 55.3 17 0.00037 25.7 3.4 36 64-99 44-79 (89)
30 PF14099 Polysacc_lyase: Polys 53.7 78 0.0017 25.8 7.6 75 44-128 145-224 (224)
31 PF02210 Laminin_G_2: Laminin 52.7 81 0.0018 22.4 9.7 76 49-130 52-127 (128)
32 PF02973 Sialidase: Sialidase, 52.6 1.4E+02 0.0029 24.9 9.2 72 51-132 103-176 (190)
33 smart00282 LamG Laminin G doma 51.3 70 0.0015 23.6 6.4 28 50-77 61-88 (135)
34 KOG1834 Calsyntenin [Extracell 49.0 21 0.00045 35.4 3.7 51 51-104 442-492 (952)
35 cd00070 GLECT Galectin/galacto 45.6 72 0.0016 23.9 5.7 67 10-79 27-105 (127)
36 PF12248 Methyltransf_FA: Farn 40.5 1.4E+02 0.0031 21.7 6.7 46 49-99 50-97 (102)
37 PF07691 PA14: PA14 domain; I 36.2 58 0.0013 24.2 3.9 29 49-78 57-85 (145)
38 KOG4352 Fas-mediated apoptosis 34.8 78 0.0017 25.8 4.4 50 27-77 73-128 (187)
39 PF00337 Gal-bind_lectin: Gala 31.8 2.2E+02 0.0047 21.2 6.6 70 9-79 26-110 (133)
40 PRK11546 zraP zinc resistance 31.5 43 0.00093 26.7 2.5 25 145-170 35-59 (143)
41 KOG1277 Endosomal membrane pro 22.1 1.3E+02 0.0027 29.0 4.1 18 51-68 191-208 (593)
42 PF13510 Fer2_4: 2Fe-2S iron-s 21.4 1.1E+02 0.0025 21.4 2.9 18 63-80 2-19 (82)
No 1
>PLN03161 Probable xyloglucan endotransglucosylase/hydrolase protein; Provisional
Probab=100.00 E-value=5.5e-68 Score=460.42 Aligned_cols=191 Identities=50% Similarity=0.990 Sum_probs=175.9
Q ss_pred CCCCCCCCCCeEeEEEcCCCCCCCcEEEEeEeeCCCCCcceeEecCCCCCCCcEEEEEEEcCCceEEEECCEEEEEEeCC
Q 029461 1 MNSNTENVRDELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKNS 80 (193)
Q Consensus 1 ~~s~~~~~~~EIDiE~lG~~~g~p~~v~tn~~~~g~g~r~~~~~l~fd~t~dFH~Y~i~W~p~~I~fyVDg~~vr~~~~~ 80 (193)
|+|.++. ||||||||||+++++|+++|||+|.+|.++|++++.|+|||+++||+|+|+|+|++|+|||||++||++++.
T Consensus 92 l~s~~~~-~dEIDiEfLG~~~g~~~~vqtN~y~~g~g~re~~~~l~fDpt~dFHtYsI~Wtp~~I~wyVDG~~iRt~~~~ 170 (291)
T PLN03161 92 LSSTGSR-HDEIDFEFLGNVSGQPYTIHTNIYTQGNGSREQQFRPWFDPTADFHNYTIHWNPSEVVWYVDGTPIRVFRNY 170 (291)
T ss_pred ecCCCCC-CCeEEEEecCCCCCCceEEEeceEeCCcCCcceeccccCCCccCcEEEEEEEchhhEEEEECCEEEEEEEcc
Confidence 3455566 999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred CC--CCCCCCCceEEEEEeeeCCCcccCCCccccCCCCCCEEEEEeEEEEeeecCCC---CCccCCC-CCCcccccCccc
Q 029461 81 GR--APFPMNQPMGVYSTLWEADDWATRGGLEKIDWSKAPFYAYYRDFDIEGCPVPG---PANCASN-PGNWWEANNYQA 154 (193)
Q Consensus 81 ~~--~~~P~~~Pm~l~lnlw~gg~Wat~GG~~~id~~~aPf~a~~~~~~v~~c~~~~---~~~C~~~-~~~w~~~~~~~~ 154 (193)
+. .+||+++||+|++|||+|++|||+||++||||+++||+|.|++|+++||.+.+ ...|... +..||+++.|+.
T Consensus 171 ~~~g~~yP~~~pM~i~~siW~g~~wAt~gG~~kidw~~aPf~a~~~~f~~~~C~~~~~~~~~~c~~~~~~~~~~~~~~~~ 250 (291)
T PLN03161 171 ENEGIAYPNKQGMRVYSSLWNADNWATQGGRVKIDWTLAPFVARGRRFRARACKWNGPVSIKQCADPTPSNWWTSPSYSQ 250 (291)
T ss_pred cccCCcCCCccceEEEEeeecCCCcccCCCceeccCCcCCeeEEeeeEEEEeeccCCCCCccccCCCCccccccCccccC
Confidence 54 67998889999999999999999999999999999999999999999998542 3479765 467999888999
Q ss_pred CCHHHHHHHHHHhhcCeeeecCCCCCCCCC-CCCCccCC
Q 029461 155 LTAMEARRYRWVRLNHMIYDYCTDKSRYPV-PPPECLAG 192 (193)
Q Consensus 155 l~~~~~~~~~~v~~~~m~YdYC~D~~R~~~-~p~EC~~~ 192 (193)
|+++|+++|+|||+||||||||+|++|||. +||||.++
T Consensus 251 l~~~~~~~~~~v~~~~m~Y~YC~D~~R~~~~~p~EC~~~ 289 (291)
T PLN03161 251 LTNAQLTQMKKVRDNFMIYDYCKDTKRFNGVMPPECFKP 289 (291)
T ss_pred CCHHHHHHHHHHHhCcEEEeccCCCCcCCCCcCcccCCC
Confidence 999999999999999999999999999998 89999764
No 2
>cd02176 GH16_XET Xyloglucan endotransglycosylase, member of glycosyl hydrolase family 16. Xyloglucan endotransglycosylases (XETs) cleave and religate xyloglucan polymers in plant cell walls via a transglycosylation mechanism. Xyloglucan is a soluble hemicellulose with a backbone of beta-1,4-linked glucose units, partially substituted with alpha-1,6-linked xylopyranose branches. It binds noncovalently to cellulose, cross-linking the adjacent cellulose microfibrils, giving it a key structural role as a matrix polymer. Therefore, XET plays an important role in all plant processes that require cell wall remodeling.
Probab=100.00 E-value=1.4e-67 Score=453.70 Aligned_cols=187 Identities=61% Similarity=1.236 Sum_probs=173.0
Q ss_pred CCCC-CCCCCeEeEEEcCCCCCCCcEEEEeEeeCCCCCcceeEecCCCCCCCcEEEEEEEcCCceEEEECCEEEEEEeCC
Q 029461 2 NSNT-ENVRDELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKNS 80 (193)
Q Consensus 2 ~s~~-~~~~~EIDiE~lG~~~g~p~~v~tn~~~~g~g~r~~~~~l~fd~t~dFH~Y~i~W~p~~I~fyVDg~~vr~~~~~ 80 (193)
.|.+ +. +|||||||||+.+|+|+++|||+|.+|.+++++++.++|||+++||+|+|+|+|++|+|||||++||++++.
T Consensus 72 ~~~~wp~-~~EID~E~lGn~~g~~~~~qtnv~~~g~g~r~~~~~l~fdpt~dFHtY~i~Wtp~~I~fyVDG~~vr~~~~~ 150 (263)
T cd02176 72 SSQGPDN-HDEIDFEFLGNVTGQPYTLQTNVFANGVGGREQRIYLWFDPTADFHTYSILWNPHQIVFYVDDVPIRVFKNN 150 (263)
T ss_pred CCCCCCC-CCeEEEEEecccCCCceEEEEEEeCCCCCCCceeeecCCCCCCCeEEEEEEEccceEEEEECCEEEEEEecc
Confidence 3444 66 999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CC--CCCCCCCceEEEEEeeeCCCcccCCCccccCCCCCCEEEEEeEEEEeeecCC-CCCccCCCC-CCcccccCcccCC
Q 029461 81 GR--APFPMNQPMGVYSTLWEADDWATRGGLEKIDWSKAPFYAYYRDFDIEGCPVP-GPANCASNP-GNWWEANNYQALT 156 (193)
Q Consensus 81 ~~--~~~P~~~Pm~l~lnlw~gg~Wat~GG~~~id~~~aPf~a~~~~~~v~~c~~~-~~~~C~~~~-~~w~~~~~~~~l~ 156 (193)
+. .+||+++||+|++|||+||+|||+||++|+||+++||+|.|++|+|+||.+. ....|.... ..||+.+.+++|+
T Consensus 151 ~~~g~~~P~~~Pm~l~~niW~g~~WAt~gG~~~~d~~~aPf~a~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~l~ 230 (263)
T cd02176 151 EALGVPYPSSQPMGVYASIWDGSDWATQGGRVKIDWSYAPFVASYRDFKLDGCVVDPGDSFSSCSCTEDWWNGSTYQQLS 230 (263)
T ss_pred cccCCCCCccceEEEEEeeEcCCCcccCCCcccccCCCCCeeEEEeeEEEeeeecCCCCccccCCCccccccccccccCC
Confidence 54 6899889999999999999999999999999999999999999999999854 445676543 5799998999999
Q ss_pred HHHHHHHHHHhhcCeeeecCCCCCCCCCCCCCc
Q 029461 157 AMEARRYRWVRLNHMIYDYCTDKSRYPVPPPEC 189 (193)
Q Consensus 157 ~~~~~~~~~v~~~~m~YdYC~D~~R~~~~p~EC 189 (193)
++|+++|+|||+||||||||+|++|||.+||||
T Consensus 231 ~~~~~~~~~~~~~~~~y~yC~d~~r~~~~p~ec 263 (263)
T cd02176 231 ANQQRAMEWVRRNYMVYDYCDDRKRYPVPPPEC 263 (263)
T ss_pred HHHHHHHHHHHHCCEEEecCCCCCcCCCCcCCC
Confidence 999999999999999999999999999999999
No 3
>cd02183 GH16_fungal_CRH1_transglycosylase glycosylphosphatidylinositol-glucanosyltransferase. Group of fungal GH16 members related to Saccharomyces cerevisiae Crh1p. Chr1p and Crh2p are transglycosylases that are required for the linkage of chitin to beta(1-3)glucose branches of beta(1-6)glucan, an important step in the assembly of new cell wall. Both have been shown to be glycosylphosphatidylinositol (GPI)-anchored. A third homologous protein, Crr1p, functions in the formation of the spore wall. They belongs to the family 16 of glycosyl hydrolases that includes lichenase, xyloglucan endotransglycosylase (XET), beta-agarase, kappa-carrageenase, endo-beta-1,3-glucanase, endo-beta-1,3-1,4-glucanase, and endo-beta-galactosidase, all of which have a conserved jelly roll fold with a deep active site channel harboring the catalytic residues.
Probab=99.97 E-value=3.3e-31 Score=220.63 Aligned_cols=114 Identities=31% Similarity=0.644 Sum_probs=100.4
Q ss_pred CCeEeEEEcCCCCCCCcEEEEeEeeCCCC---CcceeEecCCCCCCCcEEEEEEEcCCceEEEECCEEEEEEeCCC---C
Q 029461 9 RDELDFEFLGNRTGQPYTVQTNIYANGKG---DREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKNSG---R 82 (193)
Q Consensus 9 ~~EIDiE~lG~~~g~p~~v~tn~~~~g~g---~r~~~~~l~fd~t~dFH~Y~i~W~p~~I~fyVDg~~vr~~~~~~---~ 82 (193)
++|||||++|++ +..+|+|+|.+|.. ++++.+.++++++++||+|+|+|+|++|+|||||+++|++++.+ .
T Consensus 73 ~gEIDIE~~G~~---~~~~~tn~~~~g~~~~~~~~~~~~~~~~~~~dFHtY~veWtpd~I~~yVDG~~v~~~~~~~~~~~ 149 (203)
T cd02183 73 LDEIDWEWVGGD---LTQVQTNYFGKGNTTTYDRGGYHPVPNPQTEEFHTYTIDWTKDRITWYIDGKVVRTLTKADTTGG 149 (203)
T ss_pred CCEEEEEecCCC---CCEEEeEEECCCCCCCCCCceEeeCCCCCCcCcEEEEEEEecCEEEEEECCEEEEEEehhhcccC
Confidence 799999999974 45899999987754 45677888999999999999999999999999999999998754 2
Q ss_pred CCCCCCCceEEEEEeeeCCC---------cccCCCccccCCCCCCEEEEEeEEEEee
Q 029461 83 APFPMNQPMGVYSTLWEADD---------WATRGGLEKIDWSKAPFYAYYRDFDIEG 130 (193)
Q Consensus 83 ~~~P~~~Pm~l~lnlw~gg~---------Wat~GG~~~id~~~aPf~a~~~~~~v~~ 130 (193)
..||. +||+|+||+|+||+ || ||. +||+.+||+|.|++|+|..
T Consensus 150 ~~~p~-~P~~l~ln~W~gg~~~~~~g~~~Wa--Gg~--~d~~~~P~~~~vd~v~v~~ 201 (203)
T cd02183 150 YGYPQ-TPMRLQIGIWAGGDPSNAPGTIEWA--GGE--TDYDKGPFTMYVKSVTVTD 201 (203)
T ss_pred CCCCC-CCcEEEEEEecCCCccccCCcccCC--CCc--cCCCCCCEEEEEEEEEEEe
Confidence 67995 99999999999985 99 776 9999999999999999943
No 4
>cd02175 GH16_lichenase lichenase, member of glycosyl hydrolase family 16. Lichenase, also known as 1,3-1,4-beta-glucanase, is a member of glycosyl hydrolase family 16, that specifically cleaves 1,4-beta-D-glucosidic bonds in mixed-linked beta glucans that also contain 1,3-beta-D-glucosidic linkages. Natural substrates of beta-glucanase are beta-glucans from grain endosperm cell walls or lichenan from the Islandic moss, Cetraria islandica. This protein is found not only in bacteria but also in anaerobic fungi. This domain includes two seven-stranded antiparallel beta-sheets that are adjacent to one another forming a compact, jellyroll beta-sandwich structure.
Probab=99.94 E-value=5e-26 Score=189.37 Aligned_cols=112 Identities=34% Similarity=0.625 Sum_probs=97.3
Q ss_pred CCCCCeEeEEEcCCCCCCCcEEEEeEeeCCCCCcceeEecCCCCCCCcEEEEEEEcCCceEEEECCEEEEEEeCCCCCCC
Q 029461 6 ENVRDELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKNSGRAPF 85 (193)
Q Consensus 6 ~~~~~EIDiE~lG~~~g~p~~v~tn~~~~g~g~r~~~~~l~fd~t~dFH~Y~i~W~p~~I~fyVDg~~vr~~~~~~~~~~ 85 (193)
.. ++|||||++|+++. .+|+|+|.+|.++.+..+.++++++++||+|+|+|+|++|+|||||+++++++..+ ..+
T Consensus 97 ~~-~~EIDiE~~g~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~Y~v~W~~~~i~~yvDg~~v~~~~~~~-~~~ 171 (212)
T cd02175 97 DP-HDEIDIEFLGKDTT---KVQFNYYTNGVGGHEKLIDLGFDASEGFHTYAFEWEPDSIRWYVDGELVHEATATD-PNI 171 (212)
T ss_pred CC-CCEEEEEEccCCCC---EeEEEEECCCCCCCceEEeCCCCcccccEEEEEEEeCCEEEEEECCEEEEEEcCcc-CCC
Confidence 44 79999999998653 68999998887777777788899999999999999999999999999999998743 468
Q ss_pred CCCCceEEEEEeeeCC---CcccCCCccccCCCCCCEEEEEeEEEEe
Q 029461 86 PMNQPMGVYSTLWEAD---DWATRGGLEKIDWSKAPFYAYYRDFDIE 129 (193)
Q Consensus 86 P~~~Pm~l~lnlw~gg---~Wat~GG~~~id~~~aPf~a~~~~~~v~ 129 (193)
|. +||+|++|+|.|+ .|+ |. ++. .+|+.|.||+|||.
T Consensus 172 p~-~p~~i~~n~w~~~~~~~W~---G~--~~~-~~p~~~~vd~vr~~ 211 (212)
T cd02175 172 PD-TPGKIMMNLWPGDGVDDWL---GP--FDG-GTPLTAEYDWVSYT 211 (212)
T ss_pred CC-CCcEEEEEEEcCCCCCCcC---Cc--CCC-CCCeEEEEEEEEEe
Confidence 86 9999999999985 699 64 676 89999999999984
No 5
>cd02178 GH16_beta_agarase Beta-agarase, member of glycosyl hydrolase family 16. Beta-agarase is a glycosyl hydrolase family 16 (GH16) member that hydrolyzes the internal beta-1,4-linkage of agarose, a hydrophilic polysaccharide found in the cell wall of Rhodophyceaea, marine red algae. Agarose is a linear chain of galactose units linked by alternating L-alpha-1,3- and D-beta-1,4-linkages that are additionally modified by a 3,6-anhydro-bridge. Agarose forms thermo-reversible gels that are widely used in the food industry or as a laboratory medium. While beta-agarases are also found in two other families derived from the sequence-based classification of glycosyl hydrolases (GH50, and GH86) the GH16 members are most abundant. This domain adopts a curved beta-sandwich conformation, with a tunnel-shaped active site cavity, referred to as a jellyroll fold.
Probab=99.91 E-value=1.9e-23 Score=178.80 Aligned_cols=121 Identities=21% Similarity=0.248 Sum_probs=91.4
Q ss_pred CCCCCeEeE-EEcCCCCC--CCcEEEEeEeeCCCC-----Cc---ceeEecCCCCCCCcEEEEEEEc-CCceEEEECCEE
Q 029461 6 ENVRDELDF-EFLGNRTG--QPYTVQTNIYANGKG-----DR---EQRVNLWFDPAADYHLYTILWN-HHHIVFYVDDVP 73 (193)
Q Consensus 6 ~~~~~EIDi-E~lG~~~g--~p~~v~tn~~~~g~g-----~r---~~~~~l~fd~t~dFH~Y~i~W~-p~~I~fyVDg~~ 73 (193)
+. ++|||| |++|+..+ .+..+|+++|.-+.+ .+ ...+.+.++++++||+|+|+|+ |++|+|||||++
T Consensus 124 ~~-~gEIDI~E~~g~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~fHtY~veW~~p~~i~fyvDG~~ 202 (258)
T cd02178 124 DS-TTEIDILEHYGGDREEWFATRMNSNTHVFIRDPEQDYQPKDDGSWYYNPTELADDFHVYGVYWKDPDTIRFYIDGVL 202 (258)
T ss_pred CC-CCcEEhhhccCCCCCccccceeeeeEEEccCCCCCCccccccceeecCCCccccCeEEEEEEEcCCCeEEEEECCEE
Confidence 45 899998 99998632 245788887643221 11 2335566778999999999999 999999999999
Q ss_pred EEEEeCCCC-CCCCCCCceEEEEEeeeCCCcccCCCccccCCCCCCEEEEEeEEEEe
Q 029461 74 IRVYKNSGR-APFPMNQPMGVYSTLWEADDWATRGGLEKIDWSKAPFYAYYRDFDIE 129 (193)
Q Consensus 74 vr~~~~~~~-~~~P~~~Pm~l~lnlw~gg~Wat~GG~~~id~~~aPf~a~~~~~~v~ 129 (193)
++++++.+. ..+|+++||+|+||+++|| |+...+.. ..-...|..|.||+|||.
T Consensus 203 ~~~~~~~~~~~~~~f~~p~~liln~avg~-w~g~~~~~-~~~~~~p~~m~VDYVRvy 257 (258)
T cd02178 203 VRTVENSEITDGTGFDQPMYIIIDTETYD-WRGEPTDE-ELADDSKNTFYVDYVRVY 257 (258)
T ss_pred EEEEcCcccCcCCcCCCCeEEEEEecccc-CCCCCCcc-ccCCCCCCeEEEEEEEEe
Confidence 999987543 4578889999999999998 99211121 122456999999999985
No 6
>PF00722 Glyco_hydro_16: Glycosyl hydrolases family 16; InterPro: IPR000757 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 16 GH16 from CAZY comprises enzymes with a number of known activities; lichenase (3.2.1.73 from EC); xyloglucan xyloglucosyltransferase (2.4.1.207 from EC); agarase (3.2.1.81 from EC); kappa-carrageenase (3.2.1.83 from EC); endo-beta-1,3-glucanase (3.2.1.39 from EC); endo-beta-1,3-1,4-glucanase (3.2.1.6 from EC); endo-beta-galactosidase (3.2.1.103 from EC).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DGT_A 2CL2_A 2WLQ_A 2WNE_A 2W39_A 2W52_A 3ILN_A 4DFS_A 1UMZ_A 1UN1_B ....
Probab=99.89 E-value=1.2e-22 Score=163.80 Aligned_cols=107 Identities=40% Similarity=0.722 Sum_probs=90.6
Q ss_pred CCCCCeEeEEEcCCCCCCCcEEEEeEeeCCCCCc--ceeEecCCCCCCCcEEEEEEEcCCceEEEECCEEEEEEeCCCC-
Q 029461 6 ENVRDELDFEFLGNRTGQPYTVQTNIYANGKGDR--EQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKNSGR- 82 (193)
Q Consensus 6 ~~~~~EIDiE~lG~~~g~p~~v~tn~~~~g~g~r--~~~~~l~fd~t~dFH~Y~i~W~p~~I~fyVDg~~vr~~~~~~~- 82 (193)
+. ++|||||++|+.+. .+++|+|..+.+.. +..+.+.++++++||+|+|+|+|++|+|||||++++++.....
T Consensus 75 ~~-~~EIDiE~~g~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~y~~~W~~~~i~fyiDg~~~~~~~~~~~~ 150 (185)
T PF00722_consen 75 PD-GGEIDIEFLGNDPT---QVQTNVHWNGDGDSNWEKRVPLGFDPSTDFHTYGFEWTPDRIRFYIDGKLVRTVTNSDVP 150 (185)
T ss_dssp TT-TEEEEEEEETTSTT---EEEEEEEBTTBSCEEEEEEEETSSTTTTSEEEEEEEEETTEEEEEETTEEEEEEESSGST
T ss_pred cc-hhhhhhhhcccccc---ceeeeeeecccCCcccceeeccccCcCCCcEEEEEEEecCeEEEEECCEEEEEEeccccc
Confidence 55 89999999998655 59999999888765 5667788899999999999999999999999999999987653
Q ss_pred -CCCCCCCceEEEEEeeeCCCcccCCCccccCCCCCCEEEEEeEEE
Q 029461 83 -APFPMNQPMGVYSTLWEADDWATRGGLEKIDWSKAPFYAYYRDFD 127 (193)
Q Consensus 83 -~~~P~~~Pm~l~lnlw~gg~Wat~GG~~~id~~~aPf~a~~~~~~ 127 (193)
.+||+..||.|.+++|.|++|++..| .|.||+||
T Consensus 151 ~~~~P~~~~~~~~~~~w~~~~~~~~~~-----------~m~vDwvr 185 (185)
T PF00722_consen 151 GSPYPFSTPMNLALGLWPGGDWAGPAG-----------EMEVDWVR 185 (185)
T ss_dssp TTCSSEEEEEEEEEEECEBTTTHSSEC-----------EEEEEEEE
T ss_pred cccCcccceeEEEEccccCCCCCCCCC-----------EEEEEeEC
Confidence 35887689999999999999985544 56666665
No 7
>cd08023 GH16_laminarinase_like Laminarinase, member of the glycosyl hydrolase family 16. Laminarinase, also known as glucan endo-1,3-beta-D-glucosidase, is a glycosyl hydrolase family 16 member that hydrolyzes 1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans such as laminarins, curdlans, paramylons, and pachymans, with very limited action on mixed-link (1,3-1,4-)-beta-D-glucans.
Probab=99.89 E-value=2.2e-22 Score=168.88 Aligned_cols=114 Identities=25% Similarity=0.402 Sum_probs=92.8
Q ss_pred CCeEeE-EEcCCCCCCCcEEEEeEeeCCCC----CcceeEecCC-CCCCCcEEEEEEEcCCceEEEECCEEEEEEeCCCC
Q 029461 9 RDELDF-EFLGNRTGQPYTVQTNIYANGKG----DREQRVNLWF-DPAADYHLYTILWNHHHIVFYVDDVPIRVYKNSGR 82 (193)
Q Consensus 9 ~~EIDi-E~lG~~~g~p~~v~tn~~~~g~g----~r~~~~~l~f-d~t~dFH~Y~i~W~p~~I~fyVDg~~vr~~~~~~~ 82 (193)
++|||| |++|+.+ ..+++++|..+.. ..+..+.+.+ +++++||+|+|+|+|++|+|||||++|+++++...
T Consensus 113 ~~EIDI~E~~g~~~---~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~fHtY~~~W~p~~i~~yvDG~~v~~~~~~~~ 189 (235)
T cd08023 113 SGEIDIMEYVGNEP---NTVYGTLHGGATNDGNNGSGGSYTLPTDDLSDDFHTYAVEWTPDKITFYVDGKLYFTYTNPNT 189 (235)
T ss_pred CCcceeEecCCCCC---CeEEEEEECCCCCCCCCcccccEECCCCCcCCCcEEEEEEEECCEEEEEECCEEEEEEccccc
Confidence 689999 9999863 4789999987653 2344566655 78999999999999999999999999999987643
Q ss_pred ---CCCCCCCceEEEEEeeeCCCcccCCCccccCCCCCCEEEEEeEEEEe
Q 029461 83 ---APFPMNQPMGVYSTLWEADDWATRGGLEKIDWSKAPFYAYYRDFDIE 129 (193)
Q Consensus 83 ---~~~P~~~Pm~l~lnlw~gg~Wat~GG~~~id~~~aPf~a~~~~~~v~ 129 (193)
..+|+++||+|+||+++||+|+ |.. ......|..|.||+|||.
T Consensus 190 ~~~~~~~~~~p~~liln~~~gg~w~---g~~-~~~~~~p~~~~VDyVrvy 235 (235)
T cd08023 190 DNGGQWPFDQPFYLILNLAVGGNWP---GPP-DDDTPFPATMEVDYVRVY 235 (235)
T ss_pred CCcccCCCCCCcEEEEEEEEcCCCC---CCC-CCCCCCCCEEEEEEEEEC
Confidence 2356679999999999999999 531 244678999999999983
No 8
>cd00413 Glyco_hydrolase_16 glycosyl hydrolase family 16. The O-Glycosyl hydrolases are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A glycosyl hydrolase classification system based on sequence similarity has led to the definition of more than 95 different families inlcuding glycosyl hydrolase family 16. Family 16 includes lichenase, xyloglucan endotransglycosylase (XET), beta-agarase, kappa-carrageenase, endo-beta-1,3-glucanase, endo-beta-1,3-1,4-glucanase, and endo-beta-galactosidase, all of which have a conserved jelly roll fold with a deep active site channel harboring the catalytic residues.
Probab=99.89 E-value=4.4e-22 Score=163.32 Aligned_cols=107 Identities=37% Similarity=0.586 Sum_probs=89.8
Q ss_pred CCeEeEEEcCCCCCCCcEEEEeEeeCCCC-----CcceeEecCCCCCCCcEEEEEEEcCCceEEEECCEEEEEEeCCCCC
Q 029461 9 RDELDFEFLGNRTGQPYTVQTNIYANGKG-----DREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKNSGRA 83 (193)
Q Consensus 9 ~~EIDiE~lG~~~g~p~~v~tn~~~~g~g-----~r~~~~~l~fd~t~dFH~Y~i~W~p~~I~fyVDg~~vr~~~~~~~~ 83 (193)
.+|||||++|+++ ..+++++|..+.+ .....+.+++++.++||+|+|+|+|+.|+|||||++++++.+
T Consensus 98 ~~EIDiE~~~~~~---~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~H~Y~~~W~~~~i~~yvDG~~~~~~~~---- 170 (210)
T cd00413 98 GGEIDIEFLGRDP---TTVQTNVHWPGYGAGATTGEEKSVHLPFDPADDFHTYRVDWTPGEITFYVDGVLVATITN---- 170 (210)
T ss_pred CCeEEEEecccCC---CeEEEEEecCCCCcccccccceeecCCCCCccCeEEEEEEEeCCEEEEEECCEEEEEECC----
Confidence 8999999999863 3688899876543 234456677778999999999999999999999999999976
Q ss_pred CCCCCCceEEEEEeeeCCCcccCCCccccCCCCCCEEEEEeEEEE
Q 029461 84 PFPMNQPMGVYSTLWEADDWATRGGLEKIDWSKAPFYAYYRDFDI 128 (193)
Q Consensus 84 ~~P~~~Pm~l~lnlw~gg~Wat~GG~~~id~~~aPf~a~~~~~~v 128 (193)
..|. +||+|+||+|.++.|+ |. .+...+|..|.|++|||
T Consensus 171 ~~p~-~p~~i~ln~~~~~~~~---~~--~~~~~~~~~~~Vd~vrv 209 (210)
T cd00413 171 QVPD-DPMNIILNLWSDGGWW---WG--GPPPGAPAYMEIDWVRV 209 (210)
T ss_pred CCCC-CCcEEEEEEEECCCCc---cc--CCCCCCCcEEEEEEEEE
Confidence 3675 9999999999999988 32 35578899999999998
No 9
>PF06955 XET_C: Xyloglucan endo-transglycosylase (XET) C-terminus; InterPro: IPR010713 This entry represents the C terminus (approximately 60 residues) of plant xyloglucan endo-transglycosylase (XET). Xyloglucan is the predominant hemicellulose in the cell walls of most dicotyledons. With cellulose, it forms a network that strengthens the cell wall. XET catalyses the splitting of xyloglucan chains and the linking of the newly generated reducing end to the non-reducing end of another xyloglucan chain, thereby loosening the cell wall []. ; GO: 0016762 xyloglucan:xyloglucosyl transferase activity, 0006073 cellular glucan metabolic process, 0005618 cell wall, 0048046 apoplast; PDB: 1UMZ_A 1UN1_B 2VH9_B 2UWC_A 2UWB_B 2UWA_C.
Probab=99.87 E-value=7.1e-23 Score=135.86 Aligned_cols=50 Identities=56% Similarity=1.224 Sum_probs=41.5
Q ss_pred cCCCCCCcccccCcccCCHHHHHHHHHHhhcCeeeecCCCCCCCCCC-CCCc
Q 029461 139 CASNPGNWWEANNYQALTAMEARRYRWVRLNHMIYDYCTDKSRYPVP-PPEC 189 (193)
Q Consensus 139 C~~~~~~w~~~~~~~~l~~~~~~~~~~v~~~~m~YdYC~D~~R~~~~-p~EC 189 (193)
|++++..||+++.++ |+..|+++|+|||+||||||||+|++|||.. |+||
T Consensus 1 C~~~~~~w~~~~~~~-L~~~q~~~m~wvr~~ymiYdYC~D~~Rfp~~~P~EC 51 (51)
T PF06955_consen 1 CSSSSKSWWNQPYAQ-LSAKQRRQMRWVRRNYMIYDYCTDTKRFPNPLPPEC 51 (51)
T ss_dssp -TTTTTSGGCSCCCS---HHHHHHHHHHHHHCEEEEGGG-TTT-SGCGSTTH
T ss_pred CcCCCcccccCcccC-CCHHHHHHHHHHHHcCeEecccCCCCcCCCCCCCCC
Confidence 655667899998888 9999999999999999999999999999985 9999
No 10
>cd02182 GH16_Strep_laminarinase_like Streptomyces laminarinase-like, member of glycosyl hydrolase family 16. Proteins similar to Streptomyces sioyaensis beta-1,3-glucanase (laminarinase) present in Actinomycetales as well as Peziomycotina. Laminarinases belong to glycosyl hydrolase family 16 and hydrolyze the glycosidic bond of the 1,3-beta-linked glucan, a major component of fungal and plant cell walls and the structural and storage polysaccharides (laminarin) of marine macro-algae. Members of the GH16 family have a conserved jelly roll fold with an active site channel.
Probab=99.84 E-value=2.7e-20 Score=159.46 Aligned_cols=114 Identities=14% Similarity=0.089 Sum_probs=79.2
Q ss_pred CCeEeE-EEcCCCCCCCcEEEEeEeeCCC-C--CcceeEec--CCCCCCCcEEEEEEEcC-----CceEEEECCEEEEEE
Q 029461 9 RDELDF-EFLGNRTGQPYTVQTNIYANGK-G--DREQRVNL--WFDPAADYHLYTILWNH-----HHIVFYVDDVPIRVY 77 (193)
Q Consensus 9 ~~EIDi-E~lG~~~g~p~~v~tn~~~~g~-g--~r~~~~~l--~fd~t~dFH~Y~i~W~p-----~~I~fyVDg~~vr~~ 77 (193)
.+|||| |.+|... .++.++|.... + .++..... ...+.++||+|+|+|++ ++|+|||||++++++
T Consensus 128 ~GEIDImE~~~~~~----~~~~t~H~~~~~~~~~~~~~~~~~~~~~~~~~fHtY~veW~~~~~~~~~I~~yvDG~~~~t~ 203 (259)
T cd02182 128 CGELDIMENVNGLS----TGYGTLHCGVAPGGPCNEPTGIGAGTRLCDTGFHTYAVEIDRTNGDAESIRWYLDGVVYHTV 203 (259)
T ss_pred cceeeeeeccCCCC----ceEEEEeeCCCCCCCCccccCcccCCCCCCCCcEEEEEEEccCCCCCCEEEEEECCEEEEEE
Confidence 589999 9998653 24444554221 1 11111000 01245899999999997 999999999999999
Q ss_pred eCCCC-----CCCCCCCceEEEEEeeeCCCcccCCCccc-cCCCCCCEEEEEeEEEEe
Q 029461 78 KNSGR-----APFPMNQPMGVYSTLWEADDWATRGGLEK-IDWSKAPFYAYYRDFDIE 129 (193)
Q Consensus 78 ~~~~~-----~~~P~~~Pm~l~lnlw~gg~Wat~GG~~~-id~~~aPf~a~~~~~~v~ 129 (193)
+.... .+.|+++||+||||+++||+|+ |... ..-...|..|.||+|||.
T Consensus 204 ~~~~~~~~~~~~~~~~~p~ylIlN~avgg~w~---~~~~~~~~~~~p~~m~VDyVRVy 258 (259)
T cd02182 204 TGARVGDETTWQALAHHPLFIILNVAVGGNWP---GAPNGNTATGSGSAMEVDYVAVY 258 (259)
T ss_pred ehhhcCCCccccCcCCCCeEEEEEEEEeCCcC---CCCCcccccCCCceEEEEEEEEe
Confidence 76421 2234579999999999999999 4311 112457999999999985
No 11
>cd02180 GH16_fungal_KRE6_glucanase Saccharomyces cerevisiae KRE6 and related glucanses, member of glycosyl hydrolase family 16. KRE6 is a Saccharomyces cerevisiae glucanase that participates in the synthesis of beta-1,6-glucan, a major structural component of the cell wall. It is a golgi membrane protein required for normal beta-1,6-glucan levels in the cell wall. KRE6 is closely realted to laminarinase, a glycosyl hydrolase family 16 member that hydrolyzes 1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans such as laminarins, curdlans, paramylons, and pachymans, with very limited action on mixed-link (1,3-1,4-)-beta-D-glucans.
Probab=99.82 E-value=1.6e-19 Score=158.19 Aligned_cols=76 Identities=16% Similarity=0.236 Sum_probs=63.8
Q ss_pred CCCCcEEEEEEEcC-----CceEEEECCEEEEEEeCCCC--------CCCCCCCceEEEEEeeeCCCcccCCCccccCCC
Q 029461 49 PAADYHLYTILWNH-----HHIVFYVDDVPIRVYKNSGR--------APFPMNQPMGVYSTLWEADDWATRGGLEKIDWS 115 (193)
Q Consensus 49 ~t~dFH~Y~i~W~p-----~~I~fyVDg~~vr~~~~~~~--------~~~P~~~Pm~l~lnlw~gg~Wat~GG~~~id~~ 115 (193)
..++||+|+|+|+| ++|+|||||+++++++..+. .++| ++||+||||+++||+|+ |. +.+-.
T Consensus 206 ~~~~fHtY~veW~~~~~~~~~I~wyvDg~~~~~~~~~~~~~~~~~~~~~~~-~~P~ylILNlAvGg~w~---g~-~~~~~ 280 (295)
T cd02180 206 NGNEFQTYGFEYRPDDEDDGYITWFVDDEPTWTIYAKALGPNGNIGWRIIP-EEPMYIILNLGISSNFQ---DI-DWDEL 280 (295)
T ss_pred cCCCcEEEEEEEecCCCCCCEEEEEECCEEEEEEehHHcCCcccccccccC-CCCeEEEEEEEeccccC---CC-CcccC
Confidence 36899999999999 89999999999999986421 1345 59999999999999998 43 24456
Q ss_pred CCCEEEEEeEEEEe
Q 029461 116 KAPFYAYYRDFDIE 129 (193)
Q Consensus 116 ~aPf~a~~~~~~v~ 129 (193)
..|..|+||+|||.
T Consensus 281 ~~P~~m~VDyVRVY 294 (295)
T cd02180 281 QFPATMRIDYVRVY 294 (295)
T ss_pred CCCCEEEEEEEEEE
Confidence 78999999999995
No 12
>cd02177 GH16_kappa_carrageenase Kappa-carrageenase, member of glycosyl hydrolase family 16. Kappa-carrageenase is a glycosyl hydrolase family 16 (GH16) member that hydrolyzes the internal beta-1,4-linkage of kappa-carrageenans, a hydrophilic polysaccharide found in the cell wall of Rhodophyceaea, marine red algae. Carrageenans are linear chains of galactose units linked by alternating D-alpha-1,3- and D-beta-1,4-linkages that are additionally modified by a 3,6-anhydro-bridge. Depending on the position and number of sulfate ester modifications they are subdivided into kappa-, iota-, and lambda-carrageenases, kappa being modified once. Carrageenans form thermo-reversible gels widely used for industrial applications. Kappa-carrageenases exist in bacteria belonging to at least three phylogenetically distant branches, including pseudoalteromonas, planctomycetes, and baceroidetes. This domain adopts a curved beta-sandwich conformation, with a tunnel-shaped active site cavity, referred to
Probab=99.82 E-value=1.9e-19 Score=155.88 Aligned_cols=114 Identities=25% Similarity=0.281 Sum_probs=83.6
Q ss_pred CCCCCeEeE-EEcCCCC---CCC----cEEEEeEeeCCCCC--c--------ceeEecCCCCCCCcEEEEEEEcCCceEE
Q 029461 6 ENVRDELDF-EFLGNRT---GQP----YTVQTNIYANGKGD--R--------EQRVNLWFDPAADYHLYTILWNHHHIVF 67 (193)
Q Consensus 6 ~~~~~EIDi-E~lG~~~---g~p----~~v~tn~~~~g~g~--r--------~~~~~l~fd~t~dFH~Y~i~W~p~~I~f 67 (193)
+. ++|||| |++|... +++ .++|++++.+|.+. + ...+.+++|++++||+|+|+|+|++|+|
T Consensus 128 p~-~GEIDImE~~g~~~~~~~~~~~~~~~~H~~~~~~g~g~w~~~~~~~~~~~~~~~~~~d~~~~fH~y~v~W~~~~i~~ 206 (269)
T cd02177 128 VV-YSEIDVVELQQFDWYHQDDIRDMDHNLHAIVKENGQGVWKRPKMYPPTEQLNYHRPFDPSKDFHTYGCNVNQDEIIW 206 (269)
T ss_pred CC-CCeEEEEEEecCCccccccccccceEEEEeEecCCcccccCccccccccceEEccCCCCccCcEEEEEEEeCCEEEE
Confidence 45 899999 8887541 222 34666555555431 1 1235677899999999999999999999
Q ss_pred EECCEEEEEEeCCCCCCCCCCCceEEEEEeeeCC---------CcccCCCccccCCCCCCEEEEEeEEEEe
Q 029461 68 YVDDVPIRVYKNSGRAPFPMNQPMGVYSTLWEAD---------DWATRGGLEKIDWSKAPFYAYYRDFDIE 129 (193)
Q Consensus 68 yVDg~~vr~~~~~~~~~~P~~~Pm~l~lnlw~gg---------~Wat~GG~~~id~~~aPf~a~~~~~~v~ 129 (193)
||||++++++.+ .+. .+||+|.+++-.+. .|| |+. .+-+.+|..|+||+|||.
T Consensus 207 yvDg~~~~~~~~----~~w-~~~~~~~~~~~~~~p~~~~~~~~~~~--~~~--~~~~~fP~~m~VDyVRv~ 268 (269)
T cd02177 207 YVDGVEVGRKPN----KYW-HRPMNVTLSLGLRKPFVKFFDNKNNA--KAR--EKASDFPTSMYVDYVRVW 268 (269)
T ss_pred EECCEEEEEEcC----Ccc-ccccEEeeccccCcchhhhhccccCC--CCC--CccCcCCceEEEEEEEEe
Confidence 999999999975 233 48899988875432 455 333 456789999999999984
No 13
>cd08024 GH16_CCF Coelomic cytolytic factor, member of glycosyl hydrolase family 16. Subgroup of glucanases of unknown function that are related to beta-GRP (beta-1,3-glucan recognition protein), but contain active site residues. Beta-GRPs are one group of pattern recognition receptors (PRRs), also referred to as biosensor proteins, that complexes with pathogen-associated beta-1,3-glucans and then transduces signals necessary for activation of an appropriate innate immune response. Beta-GRPs are present in insects and lack all catalytic residues. This subgroup contains related proteins that still contain the active site and are widely distributed in eukaryotes. Their structures adopt a jelly roll fold with a deep active site channel harboring the catalytic residues, like those of other glycosyl hydrolase family 16 members.
Probab=99.75 E-value=1.3e-17 Score=148.02 Aligned_cols=96 Identities=24% Similarity=0.271 Sum_probs=70.6
Q ss_pred CCeEeE-EEcCCCCCCC-------cEEEEeEeeCCCCC----cc--eeE-ecCCCCCCCcEEEEEEEcCCceEEEECCEE
Q 029461 9 RDELDF-EFLGNRTGQP-------YTVQTNIYANGKGD----RE--QRV-NLWFDPAADYHLYTILWNHHHIVFYVDDVP 73 (193)
Q Consensus 9 ~~EIDi-E~lG~~~g~p-------~~v~tn~~~~g~g~----r~--~~~-~l~fd~t~dFH~Y~i~W~p~~I~fyVDg~~ 73 (193)
+||||| |.+|+.+..+ ..++.++|...... +. ... ....+.+++||+|+|+|+|++|+|||||++
T Consensus 148 sGEIDImE~~Gn~~~~~~~~~~g~~~v~~tlH~g~~~~~~~~~~~~~~~~~~~~~~~~~FHtY~veWtpd~I~fyVDG~~ 227 (330)
T cd08024 148 SGEIDIMESRGNRPLYDGGEAIGINSVGSTLHWGPDPGQNRYTKTTGKRSDSGGDFADDFHTYGLDWTPDHIRFYVDDRL 227 (330)
T ss_pred CCcEEEEEEeCCCcccccccccCcceEEEEEEeCCCCCCCccccccceeccCCCCcccCCEEEEEEEeCCEEEEEECCEE
Confidence 799999 9999864321 24666777432211 11 111 223467899999999999999999999999
Q ss_pred EEEEeCC----------------C-----CCCCCCCCceEEEEEeeeCCCcc
Q 029461 74 IRVYKNS----------------G-----RAPFPMNQPMGVYSTLWEADDWA 104 (193)
Q Consensus 74 vr~~~~~----------------~-----~~~~P~~~Pm~l~lnlw~gg~Wa 104 (193)
++++... . ....||++||||+||+++||.|.
T Consensus 228 ~~~v~~~~~~~w~~g~~~~~~~~~~w~~~~~~aPFd~~fyliLNvAVGG~~~ 279 (330)
T cd08024 228 ILTLDVPGQGFWEFGGFSGTPIDNPWAGGGKMAPFDQEFYLILNVAVGGTNG 279 (330)
T ss_pred EEEEecCCCCceeeccccccccCCcccccCcCCCCCCCEEEEEEEEecCCCC
Confidence 9999852 0 13468999999999999999886
No 14
>cd02179 GH16_beta_GRP beta-1,3-glucan recognition protein, member of glycosyl hydrolase family 16. Beta-GRP (beta-1,3-glucan recognition protein) is one of several pattern recognition receptors (PRRs), also referred to as biosensor proteins, that complexes with pathogen-associated beta-1,3-glucans and then transduces signals necessary for activation of an appropriate innate immune response. They are present in insects and lack all catalytic residues. This subgroup also contains related proteins of unknown function that still contain the active site. Their structures adopt a jelly roll fold with a deep active site channel harboring the catalytic residues, like those of other glycosyl hydrolase family 16 members.
Probab=99.70 E-value=1.1e-16 Score=141.76 Aligned_cols=93 Identities=13% Similarity=0.078 Sum_probs=64.9
Q ss_pred CCeEeE-EEcCCCCCC-------CcEEEEeEeeCCCC-Ccce---eEecCCCCCCCcEEEEEEEcCCceEEEECCEEEEE
Q 029461 9 RDELDF-EFLGNRTGQ-------PYTVQTNIYANGKG-DREQ---RVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRV 76 (193)
Q Consensus 9 ~~EIDi-E~lG~~~g~-------p~~v~tn~~~~g~g-~r~~---~~~l~fd~t~dFH~Y~i~W~p~~I~fyVDg~~vr~ 76 (193)
+||||| |.+||.... ..++|...|..... .+.. ......+.+++||+|+|+|+|++|+|||||+++++
T Consensus 146 sGEIDImE~~Gn~~~~~~g~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~ddFHtY~leWtpd~I~f~VDg~~~~~ 225 (321)
T cd02179 146 SGQIRIAFARGNAVLRADGTDIGGKKLYGGPVLTDAEPHRSANLKTKINNELWSDDFHVYTLEWKPDGITLMVDGEEYGE 225 (321)
T ss_pred CCeEEEEEeCCCCccccCCceeccceEEcccccCCCcccccccccccCCCCccccCcEEEEEEEeCCEEEEEECCEEEEE
Confidence 799999 999986311 01333333322111 1110 11112467899999999999999999999999999
Q ss_pred EeCCCC------------------CCCCCCCceEEEEEeeeCC
Q 029461 77 YKNSGR------------------APFPMNQPMGVYSTLWEAD 101 (193)
Q Consensus 77 ~~~~~~------------------~~~P~~~Pm~l~lnlw~gg 101 (193)
+..... ...||++||||+||+++||
T Consensus 226 ~~~~~~~~~~~~~~~~~~~w~~g~~~aPFD~~FyliLNlAVGG 268 (321)
T cd02179 226 IEPGEGGYSEAANNPAASRWLGGTVMAPFDKEFYLSLGVGVGG 268 (321)
T ss_pred EecCcCccccccccccCccccccCccCCCCCCeEEEEEEEecC
Confidence 985321 3468999999999999998
No 15
>COG2273 SKN1 Beta-glucanase/Beta-glucan synthetase [Carbohydrate transport and metabolism]
Probab=99.62 E-value=4.7e-15 Score=132.91 Aligned_cols=95 Identities=29% Similarity=0.493 Sum_probs=80.7
Q ss_pred CCCCCCeEeEEEcCCCCCCCcEEEEeEeeCCCCCcceeEecCC-CCCCCcEEEEEEEcCCceEEEECCEEEEEEeCCCCC
Q 029461 5 TENVRDELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWF-DPAADYHLYTILWNHHHIVFYVDDVPIRVYKNSGRA 83 (193)
Q Consensus 5 ~~~~~~EIDiE~lG~~~g~p~~v~tn~~~~g~g~r~~~~~l~f-d~t~dFH~Y~i~W~p~~I~fyVDg~~vr~~~~~~~~ 83 (193)
|.. ++|||||+||+++. +..+|+|.+.++.++.+....+++ +..++||+|+++|.++.|+|||||++++++... .
T Consensus 147 g~w-p~e~d~e~lgg~~~-~~~i~t~~~~~~~~~~~~~~~~~~~~~~~~fhty~~~W~~~~i~Wyvdg~~~~~~~~p--~ 222 (355)
T COG2273 147 GGW-PDEIDIEDLGGQST-NTVIQTNHYQGGGGGTSKLVDHPNPDAIDGFHTYAFLWGEDSISWYVDGAPVATATKP--D 222 (355)
T ss_pred CCC-CcceeeeeecCCCc-ccceEeeeeccCCCCceecccccCCCcccccccceeeccCCeEEEEEcceEeeEEecc--c
Confidence 344 79999999997654 346999999999888777777777 999999999999999999999999999999763 2
Q ss_pred CCCCCCceEEEEEeeeCCCcc
Q 029461 84 PFPMNQPMGVYSTLWEADDWA 104 (193)
Q Consensus 84 ~~P~~~Pm~l~lnlw~gg~Wa 104 (193)
..|+ .||++++|+|.++.+.
T Consensus 223 ~~~~-~p~y~~~nl~~~~~~~ 242 (355)
T COG2273 223 YIPQ-IPFYVLVNLWMGGYAG 242 (355)
T ss_pred cCcC-CcceeEEeecccCccC
Confidence 4477 9999999999997655
No 16
>PF03935 SKN1: Beta-glucan synthesis-associated protein (SKN1); InterPro: IPR005629 This family consists of the beta-glucan synthesis-associated proteins KRE6 and SKN1. Beta1,6-Glucan is a key component of the yeast cell wall, interconnecting cell wall proteins, beta1,3-glucan, and chitin. It has been postulated that the synthesis of beta1,6-glucan begins in the endoplasmic reticulum with the formation of protein-bound primer structures and that these primer structures are extended in the Golgi complex by two putative glucosyltransferases that are functionally redundant, Kre6 and Skn1. This is followed by maturation steps at the cell surface and by coupling to other cell wall macromolecules [].
Probab=98.97 E-value=2.3e-09 Score=99.70 Aligned_cols=85 Identities=16% Similarity=0.303 Sum_probs=67.5
Q ss_pred CCCcEEEEEEEcCC-----ceEEEECCEEEEEEeCCCC--------CCCCCCCceEEEEEeeeCCCcccCCCccccCCCC
Q 029461 50 AADYHLYTILWNHH-----HIVFYVDDVPIRVYKNSGR--------APFPMNQPMGVYSTLWEADDWATRGGLEKIDWSK 116 (193)
Q Consensus 50 t~dFH~Y~i~W~p~-----~I~fyVDg~~vr~~~~~~~--------~~~P~~~Pm~l~lnlw~gg~Wat~GG~~~id~~~ 116 (193)
..+||+|++||.|. .|+|+|||+++.++..... -..|. .||+||+|+....+|+ . ++|..
T Consensus 365 ~~~f~~YgfEy~Pg~~~~GYItW~vdg~~twti~a~Al~~~~~I~~R~Ip~-EPMyIIlNlgmS~sf~----~--vd~~~ 437 (504)
T PF03935_consen 365 GGCFQTYGFEYKPGDGDDGYITWFVDGEPTWTINAEALGPNPNIGQRPIPE-EPMYIILNLGMSSSFG----Y--VDWNH 437 (504)
T ss_pred CCceEEEEEEEEeCCCCCeEEEEEECCEEEEEEEhhhcCCCCCcCccccCc-CCceeeeccccccccC----c--ccccc
Confidence 48899999999874 9999999999999975432 25786 9999999999999997 2 66653
Q ss_pred --CCEEEEEeEEEEeeecCCCCCccCC
Q 029461 117 --APFYAYYRDFDIEGCPVPGPANCAS 141 (193)
Q Consensus 117 --aPf~a~~~~~~v~~c~~~~~~~C~~ 141 (193)
+|..|.||+|||..=.....-.|..
T Consensus 438 L~FP~~M~IDYVRVYQ~~~~~~vgCDP 464 (504)
T PF03935_consen 438 LCFPATMRIDYVRVYQPEDAINVGCDP 464 (504)
T ss_pred ccccceEEEeEEEEeccCCCCeeeeCC
Confidence 8999999999997543322346754
No 17
>cd02181 GH16_fungal_Lam16A_glucanase fungal 1,3(4)-beta-D-glucanases, similar to Phanerochaete chrysosporium laminarinase 16A. Group of fungal 1,3(4)-beta-D-glucanases, similar to Phanerochaete chrysosporium laminarinase 16A. Lam16A belongs to the 'nonspecific' 1,3(4)-beta-glucanase subfamily, although beta-1,6 branching and beta-1,4 bonds specifically define where Lam16A hydrolyzes its substrates, like curdlan (beta-1,3-glucan), lichenin (beta-1,3-1,4-mixed linkage glucan), and laminarin (beta-1,6-branched-1,3-glucan).
Probab=96.54 E-value=0.0093 Score=52.67 Aligned_cols=54 Identities=22% Similarity=0.339 Sum_probs=34.9
Q ss_pred CCCcEEEEEEEcCCceEEEEC---CEEEEEEeCCC--C-------CCCCC--------CCceEEEEEeeeCCCcc
Q 029461 50 AADYHLYTILWNHHHIVFYVD---DVPIRVYKNSG--R-------APFPM--------NQPMGVYSTLWEADDWA 104 (193)
Q Consensus 50 t~dFH~Y~i~W~p~~I~fyVD---g~~vr~~~~~~--~-------~~~P~--------~~Pm~l~lnlw~gg~Wa 104 (193)
+.+=-+|++||+.+.|+...= .+|- .++... + ..||. -++++|++|+-.=|+||
T Consensus 178 ~~GGGvyA~ew~~~~I~vWff~R~~iP~-di~~~~pdPs~WG~P~A~f~~~~Cdi~~~F~~~~iVfn~tfCGdwA 251 (293)
T cd02181 178 AAGGGVYAMEWTSDGIKVWFFPRGSIPA-DITSGSPDPSTWGTPAASFPGSSCDIDSFFKDQRIVFDTTFCGDWA 251 (293)
T ss_pred cCCCcEEEEEEccCcEEEEEecCCCCCc-ccccCCCCCcccCcccccCCCCCCChhHhcccCEEEEEeecccccc
Confidence 355689999999998875532 2221 111111 0 22442 17999999999999999
No 18
>PF13385 Laminin_G_3: Concanavalin A-like lectin/glucanases superfamily; PDB: 4DQA_A 1N1Y_A 1MZ6_A 1MZ5_A 1N1S_A 2A75_A 1WCS_A 1N1T_A 1N1V_A 2FHR_A ....
Probab=93.94 E-value=0.33 Score=36.08 Aligned_cols=66 Identities=17% Similarity=0.359 Sum_probs=39.9
Q ss_pred CCCCcEEEEEEEcCCceEEEECCEEEEEEeCCCCCCCCCCCceEEEEEeeeCCCcccCCCccccCCCCCCEEEEEeEEEE
Q 029461 49 PAADYHLYTILWNHHHIVFYVDDVPIRVYKNSGRAPFPMNQPMGVYSTLWEADDWATRGGLEKIDWSKAPFYAYYRDFDI 128 (193)
Q Consensus 49 ~t~dFH~Y~i~W~p~~I~fyVDg~~vr~~~~~~~~~~P~~~Pm~l~lnlw~gg~Wat~GG~~~id~~~aPf~a~~~~~~v 128 (193)
+...+|..++.|....+.+||||+++.+.........+...++ .+|+.. ....+|...+++|+|
T Consensus 83 ~~~~W~~l~~~~~~~~~~lyvnG~~~~~~~~~~~~~~~~~~~~------~iG~~~----------~~~~~~~g~i~~~~i 146 (157)
T PF13385_consen 83 PDNKWHHLALTYDGSTVTLYVNGELVGSSTIPSNISLNSNGPL------FIGGSG----------GGSSPFNGYIDDLRI 146 (157)
T ss_dssp -TT-EEEEEEEEETTEEEEEETTEEETTCTEESSSSTTSCCEE------EESS-S----------TT--B-EEEEEEEEE
T ss_pred CCCCEEEEEEEEECCeEEEEECCEEEEeEeccCCcCCCCcceE------EEeecC----------CCCCceEEEEEEEEE
Confidence 3699999999999999999999999865533211111111222 223322 235689999999999
Q ss_pred ee
Q 029461 129 EG 130 (193)
Q Consensus 129 ~~ 130 (193)
..
T Consensus 147 ~~ 148 (157)
T PF13385_consen 147 YN 148 (157)
T ss_dssp ES
T ss_pred EC
Confidence 43
No 19
>PF09264 Sial-lect-inser: Vibrio cholerae sialidase, lectin insertion; InterPro: IPR015344 This domain is predominantly found in Vibrio cholerae sialidase, and adopt a beta sandwich structure consisting of 12-14 strands arranged in two beta-sheets. It binds to lectins with high affinity helping to target the protein to sialic acid-rich environments, thereby enhancing the catalytic efficiency of the enzyme []. ; PDB: 1W0P_A 1W0O_A 1KIT_A 2W68_B.
Probab=90.55 E-value=0.5 Score=39.35 Aligned_cols=28 Identities=29% Similarity=0.619 Sum_probs=25.0
Q ss_pred CCcEEEEEEEcC--CceEEEECCEEEEEEe
Q 029461 51 ADYHLYTILWNH--HHIVFYVDDVPIRVYK 78 (193)
Q Consensus 51 ~dFH~Y~i~W~p--~~I~fyVDg~~vr~~~ 78 (193)
.+||.|.|.-.| ..-.|||||++|++..
T Consensus 92 ~gyH~Y~i~~~p~~~tASfy~DG~lI~tw~ 121 (198)
T PF09264_consen 92 HGYHKYEIVFSPLTNTASFYFDGTLIATWS 121 (198)
T ss_dssp CSEEEEEEEEETTTTEEEEEETTEEEEEE-
T ss_pred cceeEEEEEecCCCCceEEEECCEEEeecc
Confidence 579999999987 8999999999999864
No 20
>cd00152 PTX Pentraxins are plasma proteins characterized by their pentameric discoid assembly and their Ca2+ dependent ligand binding, such as Serum amyloid P component (SAP) and C-reactive Protein (CRP), which are cytokine-inducible acute-phase proteins implicated in innate immunity. CRP binds to ligands containing phosphocholine, SAP binds to amyloid fibrils, DNA, chromatin, fibronectin, C4-binding proteins and glycosaminoglycans. "Long" pentraxins have N-terminal extensions to the common pentraxin domain; one group, the neuronal pentraxins, may be involved in synapse formation and remodeling, and they may also be able to form heteromultimers.
Probab=89.54 E-value=4.9 Score=32.91 Aligned_cols=71 Identities=11% Similarity=0.161 Sum_probs=41.4
Q ss_pred CCCCcEEEEEEEc--CCceEEEECCEEEEEEeCCCCCCCCCCCceEEEEEeeeCCCcccCCCccccCCCCCCEEEEEeEE
Q 029461 49 PAADYHLYTILWN--HHHIVFYVDDVPIRVYKNSGRAPFPMNQPMGVYSTLWEADDWATRGGLEKIDWSKAPFYAYYRDF 126 (193)
Q Consensus 49 ~t~dFH~Y~i~W~--p~~I~fyVDg~~vr~~~~~~~~~~P~~~Pm~l~lnlw~gg~Wat~GG~~~id~~~aPf~a~~~~~ 126 (193)
....+|...+.|+ ..++.+||||+++..-.-.....++. .. .|+| |..--.-||. .+ ....|.-.+++|
T Consensus 88 ~~g~W~hv~~t~d~~~g~~~lyvnG~~~~~~~~~~~~~~~~-~g-~l~l----G~~q~~~gg~--~~-~~~~f~G~I~~v 158 (201)
T cd00152 88 SDGAWHHICVTWESTSGIAELWVNGKLSVRKSLKKGYTVGP-GG-SIIL----GQEQDSYGGG--FD-ATQSFVGEISDV 158 (201)
T ss_pred CCCCEEEEEEEEECCCCcEEEEECCEEeccccccCCCEECC-CC-eEEE----eecccCCCCC--CC-CCcceEEEEcee
Confidence 4678999999998 55799999999875332111012221 12 2222 2111111343 33 234788999999
Q ss_pred EE
Q 029461 127 DI 128 (193)
Q Consensus 127 ~v 128 (193)
+|
T Consensus 159 ~i 160 (201)
T cd00152 159 NM 160 (201)
T ss_pred EE
Confidence 98
No 21
>smart00560 LamGL LamG-like jellyroll fold domain.
Probab=89.09 E-value=4.5 Score=30.76 Aligned_cols=70 Identities=13% Similarity=0.198 Sum_probs=45.0
Q ss_pred CCCCCcEEEEEEEcC--CceEEEECCEEEEEEeCCCCCCCCCCCceEEEEEeeeCCCcccCCCccccCCCCCCEEEEEeE
Q 029461 48 DPAADYHLYTILWNH--HHIVFYVDDVPIRVYKNSGRAPFPMNQPMGVYSTLWEADDWATRGGLEKIDWSKAPFYAYYRD 125 (193)
Q Consensus 48 d~t~dFH~Y~i~W~p--~~I~fyVDg~~vr~~~~~~~~~~P~~~Pm~l~lnlw~gg~Wat~GG~~~id~~~aPf~a~~~~ 125 (193)
++...+|--.+-++. .+|++||||+++.+.... ..+...|+.+-.... . ++ ....+|.-.++.
T Consensus 58 ~~~~~W~hva~v~d~~~g~~~lYvnG~~~~~~~~~---~~~~~~~~~iG~~~~-----~--~~-----~~~~~f~G~Ide 122 (133)
T smart00560 58 DWIGVWVHLAGVYDGGAGKLSLYVNGVEVATSETQ---PSPSSGNLPQGGRIL-----L--GG-----AGGENFSGRLDE 122 (133)
T ss_pred CCCCCEEEEEEEEECCCCeEEEEECCEEccccccC---CcccCCceEEeeecc-----C--CC-----CCCCCceEEeeE
Confidence 445889999999998 799999999998654321 222223333221111 1 11 123489999999
Q ss_pred EEEeeec
Q 029461 126 FDIEGCP 132 (193)
Q Consensus 126 ~~v~~c~ 132 (193)
|+|..++
T Consensus 123 vriy~~a 129 (133)
T smart00560 123 VRVYNRA 129 (133)
T ss_pred EEEeccc
Confidence 9997764
No 22
>smart00159 PTX Pentraxin / C-reactive protein / pentaxin family. This family form a doscoid pentameric structure. Human serum amyloid P demonstrates calcium-mediated ligand-binding.
Probab=89.07 E-value=5.8 Score=32.71 Aligned_cols=70 Identities=17% Similarity=0.274 Sum_probs=41.0
Q ss_pred CCCCcEEEEEEEc--CCceEEEECCEEEEEEeCCCC-CCCCCCCceEEEEEeeeCCCcccCCCccccCCCCCCEEEEEeE
Q 029461 49 PAADYHLYTILWN--HHHIVFYVDDVPIRVYKNSGR-APFPMNQPMGVYSTLWEADDWATRGGLEKIDWSKAPFYAYYRD 125 (193)
Q Consensus 49 ~t~dFH~Y~i~W~--p~~I~fyVDg~~vr~~~~~~~-~~~P~~~Pm~l~lnlw~gg~Wat~GG~~~id~~~aPf~a~~~~ 125 (193)
....+|...+.|+ ..++.+||||+++.. ..... ..++ ....|+|.- .-+.+. |. .+ ....|.-.+++
T Consensus 88 ~~g~W~hvc~tw~~~~g~~~lyvnG~~~~~-~~~~~g~~i~--~~G~lvlGq-~qd~~g---g~--f~-~~~~f~G~i~~ 157 (206)
T smart00159 88 SDGKWHHICTTWESSSGIAELWVDGKPGVR-KGLAKGYTVK--PGGSIILGQ-EQDSYG---GG--FD-ATQSFVGEIGD 157 (206)
T ss_pred cCCceEEEEEEEECCCCcEEEEECCEEccc-ccccCCcEEC--CCCEEEEEe-cccCCC---CC--CC-CCcceeEEEee
Confidence 4578999999997 557999999998621 11110 1222 122233322 112232 43 33 34468899999
Q ss_pred EEE
Q 029461 126 FDI 128 (193)
Q Consensus 126 ~~v 128 (193)
|+|
T Consensus 158 v~i 160 (206)
T smart00159 158 LNM 160 (206)
T ss_pred eEE
Confidence 998
No 23
>PF06439 DUF1080: Domain of Unknown Function (DUF1080); InterPro: IPR010496 This is a family of proteins of unknown function.; PDB: 3IMM_B 3NMB_A 3S5Q_A 3OSD_A 3HBK_A 3H3L_A 3U1X_A.
Probab=83.31 E-value=3.1 Score=32.75 Aligned_cols=33 Identities=15% Similarity=0.421 Sum_probs=29.2
Q ss_pred CCCCCcEEEEEEEcCCceEEEECCEEEEEEeCC
Q 029461 48 DPAADYHLYTILWNHHHIVFYVDDVPIRVYKNS 80 (193)
Q Consensus 48 d~t~dFH~Y~i~W~p~~I~fyVDg~~vr~~~~~ 80 (193)
-+..++|++.|.-..++|+.+|||++|.++...
T Consensus 124 ~~~~~W~~~~I~~~g~~i~v~vnG~~v~~~~d~ 156 (185)
T PF06439_consen 124 IPPGEWNTVRIVVKGNRITVWVNGKPVADFTDP 156 (185)
T ss_dssp --TTSEEEEEEEEETTEEEEEETTEEEEEEETT
T ss_pred CCCCceEEEEEEEECCEEEEEECCEEEEEEEcC
Confidence 357899999999999999999999999999864
No 24
>PF09224 DUF1961: Domain of unknown function (DUF1961); InterPro: IPR015305 Members of this family are found in a set of hypothetical bacterial proteins. Their exact function has not, as yet, been determined. ; PDB: 1OQ1_C.
Probab=79.90 E-value=8.4 Score=32.75 Aligned_cols=59 Identities=22% Similarity=0.455 Sum_probs=39.7
Q ss_pred CCcEEEEEEEcCCceEEEECCEEEEEEeCCCCCCCCCCCceEEEEEeeeCCCcccCCCccccCCCC-CCEEEEEeEEEE
Q 029461 51 ADYHLYTILWNHHHIVFYVDDVPIRVYKNSGRAPFPMNQPMGVYSTLWEADDWATRGGLEKIDWSK-APFYAYYRDFDI 128 (193)
Q Consensus 51 ~dFH~Y~i~W~p~~I~fyVDg~~vr~~~~~~~~~~P~~~Pm~l~lnlw~gg~Wat~GG~~~id~~~-aPf~a~~~~~~v 128 (193)
..|+.-.|.=....|.|.|||.+|..++.......|. .+ +|+ |-+.+ +|..|.|+++.|
T Consensus 159 ~~~Yr~~i~K~~~~v~f~In~L~vf~w~Dd~~~~gPv-----------l~------~G~--IGfRqMapl~A~Yrnl~V 218 (218)
T PF09224_consen 159 RGPYRMEIVKDGRTVRFSINGLPVFSWTDDGSTYGPV-----------LR------GGR--IGFRQMAPLVARYRNLEV 218 (218)
T ss_dssp -S-EEEEEEEETTEEEEEETTEEEEEEE--SSSSSS--------------------SBE--EEEEEETT-EEEEEEEEE
T ss_pred CCCEEEEEEEcCCEEEEEECCEEEEEEEcCCCccCCc-----------cc------CcE--eeeeccchhhhhhccccC
Confidence 3666668888999999999999999997643222342 11 365 55555 799999999987
No 25
>cd00110 LamG Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of purposes including signal transduction via cell-surface steroid receptors, adhesion, migration and differentiation through mediation of cell adhesion molecules.
Probab=78.43 E-value=11 Score=28.20 Aligned_cols=72 Identities=13% Similarity=0.107 Sum_probs=41.0
Q ss_pred CCCcEEEEEEEcCCceEEEECCEEEEEEeCCCCCCCCCCCceEEEEEeeeCCCcccCCCccccCCCCCCEEEEEeEEEE
Q 029461 50 AADYHLYTILWNHHHIVFYVDDVPIRVYKNSGRAPFPMNQPMGVYSTLWEADDWATRGGLEKIDWSKAPFYAYYRDFDI 128 (193)
Q Consensus 50 t~dFH~Y~i~W~p~~I~fyVDg~~vr~~~~~~~~~~P~~~Pm~l~lnlw~gg~Wat~GG~~~id~~~aPf~a~~~~~~v 128 (193)
...||.-.|.+....+.++|||..+.+..... .. .-+..-..+..||.-....+ +......+|.--+++|++
T Consensus 79 dg~Wh~v~i~~~~~~~~l~VD~~~~~~~~~~~-~~----~~~~~~~~~~iGg~~~~~~~--~~~~~~~~F~Gci~~v~i 150 (151)
T cd00110 79 DGQWHSVSVERNGRSVTLSVDGERVVESGSPG-GS----ALLNLDGPLYLGGLPEDLKS--PGLPVSPGFVGCIRDLKV 150 (151)
T ss_pred CCCEEEEEEEECCCEEEEEECCccEEeeeCCC-Cc----eeecCCCCeEEcCCCCchhc--ccccccCCCceEeeEeEe
Confidence 45799999999999999999998543332211 10 01222233445653221111 112245677777777776
No 26
>smart00210 TSPN Thrombospondin N-terminal -like domains. Heparin-binding and cell adhesion domain of thrombospondin
Probab=70.63 E-value=29 Score=27.95 Aligned_cols=30 Identities=17% Similarity=0.210 Sum_probs=26.9
Q ss_pred CCCCcEEEEEEEcCCceEEEECCEEEEEEe
Q 029461 49 PAADYHLYTILWNHHHIVFYVDDVPIRVYK 78 (193)
Q Consensus 49 ~t~dFH~Y~i~W~p~~I~fyVDg~~vr~~~ 78 (193)
....||.-+|.+..+++++|||++++.+..
T Consensus 115 ~dg~WH~lal~V~~~~v~LyvDC~~~~~~~ 144 (184)
T smart00210 115 ADGQWHKLALSVSGSSATLYVDCNEIDSRP 144 (184)
T ss_pred ccCCceEEEEEEeCCEEEEEECCcccccee
Confidence 467999999999999999999999987764
No 27
>PF00354 Pentaxin: Pentaxin family; InterPro: IPR001759 Pentaxins (or pentraxins) [, ] are a family of proteins which show, under electron microscopy, a discoid arrangement of five noncovalently bound subunits. Proteins of the pentaxin family are involved in acute immunological responses []. Three of the principal members of the pentaxin family are serum proteins: namely, C-reactive protein (CRP) [], serum amyloid P component protein (SAP) [], and female protein (FP) []. CRP is expressed during acute phase response to tissue injury or inflammation in mammals. The protein resembles antibody and performs several functions associated with host defence: it promotes agglutination, bacterial capsular swelling and phagocytosis, and activates the classical complement pathway through its calcium-dependent binding to phosphocholine. CRPs have also been sequenced in an invertebrate, Limulus polyphemus (Atlantic horseshoe crab), where they are a normal constituent of the hemolymph. SAP is a vertebrate protein that is a precursor of amyloid component P. It is found in all types of amyloid deposits, in glomerular basement menbrane and in elastic fibres in blood vessels. SAP binds to various lipoprotein ligands in a calcium-dependent manner, and it has been suggested that, in mammals, this may have important implications in atherosclerosis and amyloidosis. FP is a SAP homologue found in Mesocricetus auratus (Golden hamster). The concentration of this plasma protein is altered by sex steroids and stimuli that elicit an acute phase response. Pentaxin proteins expressed in the nervous system are neural pentaxin I (NPI) and II (NPII) []. NPI and NPII are homologous and can exist within one species. It is suggested that both proteins mediate the uptake of synaptic macromolecules and play a role in synaptic plasticity. Apexin, a sperm acrosomal protein, is a homologue of NPII found in Cavia porcellus (Guinea pig) []. PTX3 (or TSG-14) protein is a cytokine-induced protein that is homologous to CRPs and SAPs, but its function is not yet known.; PDB: 2A3W_F 3KQR_C 3D5O_D 2A3X_G 1SAC_D 2W08_B 1GYK_B 1LGN_A 2A3Y_A 1B09_D ....
Probab=70.47 E-value=58 Score=26.74 Aligned_cols=86 Identities=23% Similarity=0.390 Sum_probs=46.5
Q ss_pred CCCCcEEEEEEEcC--CceEEEECCEEEEEEeCCCCCCCCCCCceEEEEEeeeCCCcccCCCccccCCCCCCEEEEEeEE
Q 029461 49 PAADYHLYTILWNH--HHIVFYVDDVPIRVYKNSGRAPFPMNQPMGVYSTLWEADDWATRGGLEKIDWSKAPFYAYYRDF 126 (193)
Q Consensus 49 ~t~dFH~Y~i~W~p--~~I~fyVDg~~vr~~~~~~~~~~P~~~Pm~l~lnlw~gg~Wat~GG~~~id~~~aPf~a~~~~~ 126 (193)
....+|.+-+.|+. ..+.+||||+....-........|. ... |+|.- .-+ +-||. .| ..-.|.-.+.+|
T Consensus 82 ~~~~Whh~C~tW~s~~G~~~ly~dG~~~~~~~~~~g~~i~~-gG~-~vlGQ-eQd---~~gG~--fd-~~q~F~G~i~~~ 152 (195)
T PF00354_consen 82 RDGQWHHICVTWDSSTGRWQLYVDGVRLSSTGLATGHSIPG-GGT-LVLGQ-EQD---SYGGG--FD-ESQAFVGEISDF 152 (195)
T ss_dssp -TSS-EEEEEEEETTTTEEEEEETTEEEEEEESSTT--B-S-SEE-EEESS--BS---BTTBT--CS-GGGB--EEEEEE
T ss_pred CCCCcEEEEEEEecCCcEEEEEECCEecccccccCCceECC-CCE-EEECc-ccc---ccCCC--cC-CccEeeEEEece
Confidence 35889999999964 7899999999554332221123332 222 22221 111 22453 33 345899999999
Q ss_pred EEeeecCCCCCccCCCCCCcccccCcccCCHHHHHHHHH
Q 029461 127 DIEGCPVPGPANCASNPGNWWEANNYQALTAMEARRYRW 165 (193)
Q Consensus 127 ~v~~c~~~~~~~C~~~~~~w~~~~~~~~l~~~~~~~~~~ 165 (193)
++ |+. .|++.++++|..
T Consensus 153 ~i------------------Wd~----vLs~~eI~~l~~ 169 (195)
T PF00354_consen 153 NI------------------WDR----VLSPEEIRALAS 169 (195)
T ss_dssp EE------------------ESS-------HHHHHHHHH
T ss_pred EE------------------Eee----eCCHHHHHHHHh
Confidence 88 665 788888877754
No 28
>PF10287 DUF2401: Putative TOS1-like glycosyl hydrolase (DUF2401); InterPro: IPR018805 This entry represents a family of proteins conserved primarily in fungi. One member is annotated putatively as OPEL, a house-keeping protein, but this could not be confirmed. It contains 5 highly conserved cysteines two of which form a characteristic CGC sequence motif.
Probab=57.68 E-value=41 Score=28.98 Aligned_cols=51 Identities=16% Similarity=0.367 Sum_probs=31.4
Q ss_pred CCCCCeEeE-EEcCCCCCCCcEEEEeEee-CCC----CCcceeEecCC-CCCCCcEEEEEEEcC
Q 029461 6 ENVRDELDF-EFLGNRTGQPYTVQTNIYA-NGK----GDREQRVNLWF-DPAADYHLYTILWNH 62 (193)
Q Consensus 6 ~~~~~EIDi-E~lG~~~g~p~~v~tn~~~-~g~----g~r~~~~~l~f-d~t~dFH~Y~i~W~p 62 (193)
.. +||.|| |.|..... .+-+.+|. +|. ++.+.. -.| -|++..-.++|.++.
T Consensus 149 sG-CGEfDifEVl~~g~~---k~~St~H~~qG~~~~~~g~G~~--~yf~RPt~~~~k~aVifd~ 206 (235)
T PF10287_consen 149 SG-CGEFDIFEVLNSGDD---KLKSTFHDYQGTDDINGGGGSS--DYFKRPTSGTMKVAVIFDS 206 (235)
T ss_pred CC-cccceeeeeccCCCc---eeEEEEecccCccccCCCCCCC--CcccCCCCCCeEEEEEEcC
Confidence 35 899999 99976432 57777776 443 111111 112 367788888888754
No 29
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=55.32 E-value=17 Score=25.66 Aligned_cols=36 Identities=14% Similarity=0.241 Sum_probs=23.3
Q ss_pred ceEEEECCEEEEEEeCCCCCCCCCCCceEEEEEeee
Q 029461 64 HIVFYVDDVPIRVYKNSGRAPFPMNQPMGVYSTLWE 99 (193)
Q Consensus 64 ~I~fyVDg~~vr~~~~~~~~~~P~~~Pm~l~lnlw~ 99 (193)
.+.|||||+++.+........|+-..|..-.|.+-+
T Consensus 44 ~~~W~vdg~~~g~~~~~~~~~~~~~~~G~h~l~vvD 79 (89)
T PF06832_consen 44 PVYWFVDGEPLGTTQPGHQLFWQPDRPGEHTLTVVD 79 (89)
T ss_pred cEEEEECCEEcccCCCCCeEEeCCCCCeeEEEEEEc
Confidence 788999999996655443333433366666666643
No 30
>PF14099 Polysacc_lyase: Polysaccharide lyase; PDB: 3ILR_A 3IKW_A 3INA_A 3IMN_A 3IN9_A 2ZZJ_A.
Probab=53.73 E-value=78 Score=25.79 Aligned_cols=75 Identities=15% Similarity=0.293 Sum_probs=46.8
Q ss_pred ecCCCCCCCcEEEEEE--EcC---CceEEEECCEEEEEEeCCCCCCCCCCCceEEEEEeeeCCCcccCCCccccCCCCCC
Q 029461 44 NLWFDPAADYHLYTIL--WNH---HHIVFYVDDVPIRVYKNSGRAPFPMNQPMGVYSTLWEADDWATRGGLEKIDWSKAP 118 (193)
Q Consensus 44 ~l~fd~t~dFH~Y~i~--W~p---~~I~fyVDg~~vr~~~~~~~~~~P~~~Pm~l~lnlw~gg~Wat~GG~~~id~~~aP 118 (193)
.+...+...+|.+.|. |.+ ..|..++||++|..++.. ..++..+..|+-+.|.-.+ |.+..+. .+- .
T Consensus 145 ~~~~~~~G~W~~~~i~~~~s~~~~G~~~vw~nG~~v~~~~g~--~~~~~~~~~y~K~GiYr~~-~~~~~~~--~~~--~- 216 (224)
T PF14099_consen 145 DLGPVERGKWHDFVIHVKWSPDSDGFLEVWLNGKLVVDYKGP--TGYNDDRGPYFKFGIYRSG-WKNDPNE--SDT--Q- 216 (224)
T ss_dssp ECCCS-TTSEEEEEEEEEE-CCCTEEEEEEECCEECCEEEEE--ECECCSSEEEEEEEEEEHC-CHHHSC----SS----
T ss_pred cCCCcCCCcEEEEEEEEEECCCCCEEEEEEECCEEEEEEeCC--ceeCCCCcceeEEEEECCC-CcCCCcc--ccc--E-
Confidence 3333455899988765 875 889999999999988763 2333347888888888543 3311111 111 1
Q ss_pred EEEEEeEEEE
Q 029461 119 FYAYYRDFDI 128 (193)
Q Consensus 119 f~a~~~~~~v 128 (193)
..||+|++
T Consensus 217 --vy~D~v~~ 224 (224)
T PF14099_consen 217 --VYYDNVRI 224 (224)
T ss_dssp --EEEEEEE-
T ss_pred --EEeccccC
Confidence 88888874
No 31
>PF02210 Laminin_G_2: Laminin G domain; InterPro: IPR012680 Laminins are large heterotrimeric glycoproteins involved in basement membrane function []. The laminin globular (G) domain can be found in one to several copies in various laminin family members, including a large number of extracellular proteins. The C terminus of the laminin alpha chain contains a tandem repeat of five laminin G domains, which are critical for heparin-binding and cell attachment activity []. Laminin alpha4 is distributed in a variety of tissues including peripheral nerves, dorsal root ganglion, skeletal muscle and capillaries; in the neuromuscular junction, it is required for synaptic specialisation []. The structure of the laminin-G domain has been predicted to resemble that of pentraxin []. Laminin G domains can vary in their function, and a variety of binding functions have been ascribed to different LamG modules. For example, the laminin alpha1 and alpha2 chains each have five C-teminal laminin G domains, where only domains LG4 and LG5 contain binding sites for heparin, sulphatides and the cell surface receptor dystroglycan []. Laminin G-containing proteins appear to have a wide variety of roles in cell adhesion, signalling, migration, assembly and differentiation. This entry represents one subtype of laminin G domains, which is sometimes found in association with thrombospondin-type laminin G domains (IPR012679 from INTERPRO).; PDB: 3POY_A 3QCW_B 3R05_B 3ASI_A 3MW4_B 3MW3_A 1QU0_D 1DYK_A 1OKQ_A 3SH4_A ....
Probab=52.70 E-value=81 Score=22.36 Aligned_cols=76 Identities=12% Similarity=0.157 Sum_probs=49.2
Q ss_pred CCCCcEEEEEEEcCCceEEEECCEEEEEEeCCCCCCCCCCCceEEEEEeeeCCCcccCCCccccCCCCCCEEEEEeEEEE
Q 029461 49 PAADYHLYTILWNHHHIVFYVDDVPIRVYKNSGRAPFPMNQPMGVYSTLWEADDWATRGGLEKIDWSKAPFYAYYRDFDI 128 (193)
Q Consensus 49 ~t~dFH~Y~i~W~p~~I~fyVDg~~vr~~~~~~~~~~P~~~Pm~l~lnlw~gg~Wat~GG~~~id~~~aPf~a~~~~~~v 128 (193)
....||.-.|.=....++..||+............. .-+.....++.||.-...... ..-....|.--+++++|
T Consensus 52 ~dg~wh~v~i~~~~~~~~l~Vd~~~~~~~~~~~~~~----~~~~~~~~l~iGg~~~~~~~~--~~~~~~~f~Gci~~l~v 125 (128)
T PF02210_consen 52 NDGQWHKVSISRDGNRVTLTVDGQSVSSESLPSSSS----DSLDPDGSLYIGGLPESNQPS--GSVDTPGFVGCIRDLRV 125 (128)
T ss_dssp TSSSEEEEEEEEETTEEEEEETTSEEEEEESSSTTH----HCBESEEEEEESSTTTTCTCT--TSSTTSB-EEEEEEEEE
T ss_pred cccceeEEEEEEeeeeEEEEecCccceEEeccccce----ecccCCCCEEEecccCccccc--cccCCCCcEEEcCeEEE
Confidence 357799999999999999999999988776532110 022345567788754421111 11115678888888888
Q ss_pred ee
Q 029461 129 EG 130 (193)
Q Consensus 129 ~~ 130 (193)
++
T Consensus 126 ng 127 (128)
T PF02210_consen 126 NG 127 (128)
T ss_dssp TT
T ss_pred CC
Confidence 54
No 32
>PF02973 Sialidase: Sialidase, N-terminal domain; InterPro: IPR004124 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Sialidases (GH33 from CAZY) hydrolyse alpha-(2->3)-, alpha-(2->6)-, alpha-(2->8)-glycosidic linkages of terminal sialic residues in oligosaccharides, glycoproteins, glycolipids, colominic acid and synthetic substrates. Sialidases may act as pathogenic factors in microbial infections []. The 1.8 A structure of trans-sialidase from leech (Macrobdella decora, Q27701 from SWISSPROT) in complex with 2-deoxy-2, 3-didehydro-NeuAc was solved. The refined model comprising residues 81-769 has a catalytic beta-propeller domain, a N-terminal lectin-like domain and an irregular beta-stranded domain inserted into the catalytic domain [].; GO: 0004308 exo-alpha-sialidase activity, 0005975 carbohydrate metabolic process; PDB: 2JKB_A 2VW2_A 2VW0_A 2VW1_A 2V73_B 2V72_A 1SLI_A 1SLL_A 2SLI_A 4SLI_A ....
Probab=52.57 E-value=1.4e+02 Score=24.91 Aligned_cols=72 Identities=13% Similarity=0.217 Sum_probs=40.9
Q ss_pred CCcEEEEEEEc--CCceEEEECCEEEEEEeCCCCCCCCCCCceEEEEEeeeCCCcccCCCccccCCCCCCEEEEEeEEEE
Q 029461 51 ADYHLYTILWN--HHHIVFYVDDVPIRVYKNSGRAPFPMNQPMGVYSTLWEADDWATRGGLEKIDWSKAPFYAYYRDFDI 128 (193)
Q Consensus 51 ~dFH~Y~i~W~--p~~I~fyVDg~~vr~~~~~~~~~~P~~~Pm~l~lnlw~gg~Wat~GG~~~id~~~aPf~a~~~~~~v 128 (193)
..||+=++.=+ ..+.++||||..|.++.... ..|-.+-| =+=++-.|+. .++|. . ..||.-.|++++|
T Consensus 103 ~~~~tva~~ad~~~~~ykly~NG~~v~~~~~~~-~~Fis~i~--~~n~~~iG~t--~R~g~--~---~y~f~G~I~~l~i 172 (190)
T PF02973_consen 103 VTFNTVAFVADSKNKGYKLYVNGELVSTLSSKS-GNFISDIP--GLNSVQIGGT--NRAGS--N---AYPFNGTIDNLKI 172 (190)
T ss_dssp ES-EEEEEEEETTTTEEEEEETTCEEEEEEECT-SS-GGGST--T--EEEESSE--EETTE--E---ES--EEEEEEEEE
T ss_pred ceEEEEEEEEecCCCeEEEEeCCeeEEEecccc-ccHhhcCc--CCceEEEcce--EeCCC--c---eecccceEEEEEE
Confidence 46888777775 78999999998888775432 22321111 0112233442 22343 3 4599999999999
Q ss_pred eeec
Q 029461 129 EGCP 132 (193)
Q Consensus 129 ~~c~ 132 (193)
..++
T Consensus 173 Yn~a 176 (190)
T PF02973_consen 173 YNRA 176 (190)
T ss_dssp ESS-
T ss_pred EcCc
Confidence 7663
No 33
>smart00282 LamG Laminin G domain.
Probab=51.32 E-value=70 Score=23.56 Aligned_cols=28 Identities=14% Similarity=0.119 Sum_probs=23.7
Q ss_pred CCCcEEEEEEEcCCceEEEECCEEEEEE
Q 029461 50 AADYHLYTILWNHHHIVFYVDDVPIRVY 77 (193)
Q Consensus 50 t~dFH~Y~i~W~p~~I~fyVDg~~vr~~ 77 (193)
...||.=.|.-+...+.++|||......
T Consensus 61 dg~WH~v~i~~~~~~~~l~VD~~~~~~~ 88 (135)
T smart00282 61 DGQWHRVAVERNGRRVTLSVDGENPVSG 88 (135)
T ss_pred CCCEEEEEEEEeCCEEEEEECCCccccE
Confidence 3689999999999999999999765433
No 34
>KOG1834 consensus Calsyntenin [Extracellular structures]
Probab=49.02 E-value=21 Score=35.43 Aligned_cols=51 Identities=18% Similarity=0.395 Sum_probs=39.1
Q ss_pred CCcEEEEEEEcCCceEEEECCEEEEEEeCCCCCCCCCCCceEEEEEeeeCCCcc
Q 029461 51 ADYHLYTILWNHHHIVFYVDDVPIRVYKNSGRAPFPMNQPMGVYSTLWEADDWA 104 (193)
Q Consensus 51 ~dFH~Y~i~W~p~~I~fyVDg~~vr~~~~~~~~~~P~~~Pm~l~lnlw~gg~Wa 104 (193)
.+||-|.+.-+--.+..||||+..--+.-. ..||- .|.++-..|=+|.=|-
T Consensus 442 ~EWH~Y~ln~efp~VtlyvDG~Sfep~~i~--ddwpl-Hpsk~~tqLvVGACW~ 492 (952)
T KOG1834|consen 442 NEWHHYVLNVEFPDVTLYVDGKSFEPPLIT--DDWPL-HPSKIETQLVVGACWQ 492 (952)
T ss_pred hhhheeEEeecCceEEEEEcCcccCCceec--cCCcc-CcccccceeEEeeecc
Confidence 678999999976669999999875322111 47887 7777888888888898
No 35
>cd00070 GLECT Galectin/galactose-binding lectin. This domain exclusively binds beta-galactosides, such as lactose, and does not require metal ions for activity. GLECT domains occur as homodimers or tandemly repeated domains. They are developmentally regulated and may be involved in differentiation, cell-cell interaction and cellular regulation.
Probab=45.58 E-value=72 Score=23.91 Aligned_cols=67 Identities=16% Similarity=0.267 Sum_probs=43.3
Q ss_pred CeEeEEEcCCCCCCCcEEEEeEe-----------eCCCCCcceeEe-cCCCCCCCcEEEEEEEcCCceEEEECCEEEEEE
Q 029461 10 DELDFEFLGNRTGQPYTVQTNIY-----------ANGKGDREQRVN-LWFDPAADYHLYTILWNHHHIVFYVDDVPIRVY 77 (193)
Q Consensus 10 ~EIDiE~lG~~~g~p~~v~tn~~-----------~~g~g~r~~~~~-l~fd~t~dFH~Y~i~W~p~~I~fyVDg~~vr~~ 77 (193)
+..-|.|..... ...+|.|.- .+|.-++|++.. .+|-+-+.| .-.|.=+++....+|||+.+..|
T Consensus 27 ~~f~Inl~~~~~--~i~lH~n~rf~~~~IV~Ns~~~g~Wg~Eer~~~~pf~~g~~F-~l~i~~~~~~f~i~vng~~~~~F 103 (127)
T cd00070 27 KRFSINLGTGSS--DIALHFNPRFDENVIVRNSFLNGNWGPEERSGGFPFQPGQPF-ELTILVEEDKFQIFVNGQHFFSF 103 (127)
T ss_pred CEEEEEEecCCC--CEEEEEeeeCCCCEEEEcCCCCCEecHhhccCCCCCCCCCeE-EEEEEEcCCEEEEEECCEeEEEe
Confidence 556666665432 345666642 223334555543 555554444 88888999999999999999888
Q ss_pred eC
Q 029461 78 KN 79 (193)
Q Consensus 78 ~~ 79 (193)
+.
T Consensus 104 ~~ 105 (127)
T cd00070 104 PH 105 (127)
T ss_pred cC
Confidence 64
No 36
>PF12248 Methyltransf_FA: Farnesoic acid 0-methyl transferase; InterPro: IPR022041 This domain, found in farnesoic acid O-methyl transferase, is approximately 110 amino acids in length. Farnesoic acid O-methyl transferase (FAMeT) is the enzyme that catalyses the formation of methyl farnesoate (MF) from farnesoic acid (FA) in the biosynthetic pathway of juvenile hormone (JH) [].
Probab=40.51 E-value=1.4e+02 Score=21.68 Aligned_cols=46 Identities=17% Similarity=0.330 Sum_probs=35.1
Q ss_pred CCCCcEEEEEEEcCCceEEEECCE--EEEEEeCCCCCCCCCCCceEEEEEeee
Q 029461 49 PAADYHLYTILWNHHHIVFYVDDV--PIRVYKNSGRAPFPMNQPMGVYSTLWE 99 (193)
Q Consensus 49 ~t~dFH~Y~i~W~p~~I~fyVDg~--~vr~~~~~~~~~~P~~~Pm~l~lnlw~ 99 (193)
...+|..|.|.|....|.+..||. |+-+++.. . |. ...|+=++-|.
T Consensus 50 s~~e~~~fwI~~~~G~I~vg~~g~~~pfl~~~Dp--~--~~-~v~yvGft~w~ 97 (102)
T PF12248_consen 50 SPSEFRMFWISWRDGTIRVGRGGEDEPFLEWTDP--E--PI-PVNYVGFTGWG 97 (102)
T ss_pred CCCccEEEEEEECCCEEEEEECCCccEEEEEECC--C--CC-cccEEEEecCC
Confidence 368999999999999999999988 77777742 2 43 45566666664
No 37
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=36.24 E-value=58 Score=24.21 Aligned_cols=29 Identities=7% Similarity=0.133 Sum_probs=24.5
Q ss_pred CCCCcEEEEEEEcCCceEEEECCEEEEEEe
Q 029461 49 PAADYHLYTILWNHHHIVFYVDDVPIRVYK 78 (193)
Q Consensus 49 ~t~dFH~Y~i~W~p~~I~fyVDg~~vr~~~ 78 (193)
|.++-|++.+. .-+.++++|||++|-...
T Consensus 57 ~~~G~y~f~~~-~~d~~~l~idg~~vid~~ 85 (145)
T PF07691_consen 57 PETGTYTFSLT-SDDGARLWIDGKLVIDNW 85 (145)
T ss_dssp SSSEEEEEEEE-ESSEEEEEETTEEEEECS
T ss_pred ccCceEEEEEE-ecccEEEEECCEEEEcCC
Confidence 47888999999 888999999999996554
No 38
>KOG4352 consensus Fas-mediated apoptosis inhibitor FAIM [Signal transduction mechanisms]
Probab=34.80 E-value=78 Score=25.77 Aligned_cols=50 Identities=24% Similarity=0.499 Sum_probs=35.7
Q ss_pred EEEeEeeCCCC------CcceeEecCCCCCCCcEEEEEEEcCCceEEEECCEEEEEE
Q 029461 27 VQTNIYANGKG------DREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVY 77 (193)
Q Consensus 27 v~tn~~~~g~g------~r~~~~~l~fd~t~dFH~Y~i~W~p~~I~fyVDg~~vr~~ 77 (193)
..-.++.+|+. .+.+++.+|.- +.|=|.|+|--..+.+..+++|..+++-
T Consensus 73 YEYsL~inGKs~~ky~Ed~~k~~~~W~~-t~dg~~~RivL~kdtm~~w~NG~~l~Ta 128 (187)
T KOG4352|consen 73 YEYSLYINGKSHDKYTEDMTKQYRLWLY-TDDGQEYRIVLKKDTMSLWVNGDELRTA 128 (187)
T ss_pred EEEEEEEcCcchHHHHHHhhhheeEEEE-ecCCceEEEEEeccceeeEEcCcccccc
Confidence 44456677763 24456677632 3444999999999999999999888753
No 39
>PF00337 Gal-bind_lectin: Galactoside-binding lectin; InterPro: IPR001079 Galectins (also known as galaptins or S-lectin) are a family of proteins defined by having at least one characteristic carbohydrate recognition domain (CRD) with an affinity for beta-galactosides and sharing certain sequence elements. Members of the galectins family are found in mammals, birds, amphibians, fish, nematodes, sponges, and some fungi. Galectins are known to carry out intra- and extracellular functions through glycoconjugate-mediated recogntion. From the cytosol they may be secreted by non-classical pathways, but they may also be targeted to the nucleus or specific sub-cytosolic sites. Within the same peptide chain some galectins have a CRD with only a few additional amino acids, whereas others have two CRDs joined by a link peptide, and one (galectin-3) has one CRD joined to a different type of domain [, ]. The galectin carbohydrate recognition domain (CRD) is a beta-sandwich of about 135 amino acid. The two sheets are slightly bent with 6 strands forming the concave side and 5 strands forming the convex side. The concave side forms a groove in which carbohydrate is bound, and which is long enough to hold about a linear tetrasaccharide [, ].; GO: 0005529 sugar binding; PDB: 2WSU_B 2WT0_A 2WT1_A 2WT2_B 2WSV_A 1HLC_A 2ZGQ_A 3M3Q_B 1WW5_C 3M3E_A ....
Probab=31.78 E-value=2.2e+02 Score=21.21 Aligned_cols=70 Identities=16% Similarity=0.236 Sum_probs=43.5
Q ss_pred CCeEeEEEcCC--CCCCCcEEEEeEee------------CCCCCccee-EecCCCCCCCcEEEEEEEcCCceEEEECCEE
Q 029461 9 RDELDFEFLGN--RTGQPYTVQTNIYA------------NGKGDREQR-VNLWFDPAADYHLYTILWNHHHIVFYVDDVP 73 (193)
Q Consensus 9 ~~EIDiE~lG~--~~g~p~~v~tn~~~------------~g~g~r~~~-~~l~fd~t~dFH~Y~i~W~p~~I~fyVDg~~ 73 (193)
.+..-|.++.. .......+|.|.-- +|.-+.|++ ...+|-+-+.| +-.|.=+++.+.++|||+.
T Consensus 26 ~~~f~inl~~~~~~~~~~i~lH~~~rf~~~~~iv~Ns~~~g~Wg~Ee~~~~~pf~~g~~F-~i~I~~~~~~f~I~vng~~ 104 (133)
T PF00337_consen 26 AKRFSINLQTGPNDPDDDIALHFNPRFDEQNVIVRNSRINGKWGQEERESPFPFQPGQPF-EIRIRVEEDGFKIYVNGKH 104 (133)
T ss_dssp SSBEEEEEEES-STTTTEEEEEEEEECTTEEEEEEEEEETTEE-SEEEESSTSSTTTSEE-EEEEEEESSEEEEEETTEE
T ss_pred CCEEEEEecCCCcCCCCCEEEEEEEEeCCCceEEEeceECCEeccceeeeeeeecCCceE-EEEEEEecCeeEEEECCeE
Confidence 45556666654 22233456665532 333345555 44556655554 6677788999999999999
Q ss_pred EEEEeC
Q 029461 74 IRVYKN 79 (193)
Q Consensus 74 vr~~~~ 79 (193)
+..|..
T Consensus 105 ~~~F~~ 110 (133)
T PF00337_consen 105 FCSFPH 110 (133)
T ss_dssp EEEEE-
T ss_pred EEEeeC
Confidence 999975
No 40
>PRK11546 zraP zinc resistance protein; Provisional
Probab=31.46 E-value=43 Score=26.71 Aligned_cols=25 Identities=16% Similarity=0.350 Sum_probs=20.7
Q ss_pred CcccccCcccCCHHHHHHHHHHhhcC
Q 029461 145 NWWEANNYQALTAMEARRYRWVRLNH 170 (193)
Q Consensus 145 ~w~~~~~~~~l~~~~~~~~~~v~~~~ 170 (193)
.|| +..|..||++|+++++.++++|
T Consensus 35 G~~-~~~~~~LT~EQQa~~q~I~~~f 59 (143)
T PRK11546 35 GMW-QQNAAPLTTEQQAAWQKIHNDF 59 (143)
T ss_pred CCC-ccccccCCHHHHHHHHHHHHHH
Confidence 455 4467899999999999998876
No 41
>KOG1277 consensus Endosomal membrane proteins, EMP70 [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.13 E-value=1.3e+02 Score=28.97 Aligned_cols=18 Identities=17% Similarity=0.438 Sum_probs=14.7
Q ss_pred CCcEEEEEEEcCCceEEE
Q 029461 51 ADYHLYTILWNHHHIVFY 68 (193)
Q Consensus 51 ~dFH~Y~i~W~p~~I~fy 68 (193)
.-=|+|++.|.+..+.|-
T Consensus 191 ~~~~tYsV~W~~t~v~f~ 208 (593)
T KOG1277|consen 191 KLTFTYSVKWKETEVEFE 208 (593)
T ss_pred CCceEEEEEeeeccCcHH
Confidence 445899999999988773
No 42
>PF13510 Fer2_4: 2Fe-2S iron-sulfur cluster binding domain; PDB: 1Y56_A 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=21.40 E-value=1.1e+02 Score=21.37 Aligned_cols=18 Identities=17% Similarity=0.355 Sum_probs=14.6
Q ss_pred CceEEEECCEEEEEEeCC
Q 029461 63 HHIVFYVDDVPIRVYKNS 80 (193)
Q Consensus 63 ~~I~fyVDg~~vr~~~~~ 80 (193)
+.|+|+|||+++......
T Consensus 2 ~~v~i~idG~~v~~~~G~ 19 (82)
T PF13510_consen 2 KMVTITIDGKPVEVPPGE 19 (82)
T ss_dssp EEEEEEETTEEEEEEET-
T ss_pred CEEEEEECCEEEEEcCCC
Confidence 468999999999887654
Done!