BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029462
(193 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2KN4|A Chain A, The Structure Of The Rrm Domain Of Sc35
Length = 158
Score = 67.8 bits (164), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 50/85 (58%)
Query: 17 VEEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAA 76
VE ++ L T+ + LR F ++GR+ D+Y+PRD YT E RGF FV++ D DA
Sbjct: 67 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAE 126
Query: 77 DAKYHMDGYLLLGRELTVVFAEENR 101
DA MDG +L GREL V A R
Sbjct: 127 DAMDAMDGAVLDGRELRVQMARYGR 151
>pdb|2LEA|A Chain A, Solution Structure Of Human Srsf2 (Sc35) Rrm
pdb|2LEB|A Chain A, Solution Structure Of Human Srsf2 (Sc35) Rrm In Complex
With 5'- Uccagu-3'
pdb|2LEC|A Chain A, Solution Structure Of Human Srsf2 (Sc35) Rrm In Complex
With 5'- Uggagu-3'
Length = 135
Score = 67.8 bits (164), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 39/90 (43%), Positives = 51/90 (56%)
Query: 17 VEEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAA 76
VE ++ L T+ + LR F ++GR+ D+Y+PRD YT E RGF FV++ D DA
Sbjct: 44 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAE 103
Query: 77 DAKYHMDGYLLLGRELTVVFAEENRKKPSE 106
DA MDG +L GREL V A R S
Sbjct: 104 DAMDAMDGAVLDGRELRVQMARYGRPPDSH 133
>pdb|2DNM|A Chain A, Solution Structure Of Rna Binding Domain In Srp46 Splicing
Factor
Length = 103
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 46/74 (62%)
Query: 29 TFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLL 88
T+ + LR F ++GR+ D+Y+PR+ +T PRGF FV++ D DA DA+ MDG L
Sbjct: 22 TYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELD 81
Query: 89 GRELTVVFAEENRK 102
GREL V A R+
Sbjct: 82 GRELRVQVARYGRR 95
>pdb|1FXL|A Chain A, Crystal Structure Of Hud And Au-Rich Element Of The C-Fos
Rna
pdb|1G2E|A Chain A, Crystal Structure Of Hud And Au-Rich Element Of The Tumor
Necrosis Factor Alpha Rna
Length = 167
Score = 56.6 bits (135), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 5/91 (5%)
Query: 21 SRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 80
+ L+ + M E+ R FG G ++ L RD TG+ G+GFV YIDP DA A
Sbjct: 3 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 62
Query: 81 HMDGYLLLGRELTVVFAEENRKKPSEMRARE 111
++G L + + V +A +PS R+
Sbjct: 63 TLNGLRLQTKTIKVSYA-----RPSSASIRD 88
Score = 31.6 bits (70), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 31 AMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLG- 89
M ++L F Q+GR+ + D TG RG GF+++ +A +A ++G G
Sbjct: 99 TMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGA 158
Query: 90 -RELTVVFA 97
+TV FA
Sbjct: 159 TEPITVKFA 167
>pdb|2DH7|A Chain A, Solution Structure Of The Second Rna Binding Domain In
Nucleolysin Tiar
Length = 105
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 41/74 (55%)
Query: 32 MIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRE 91
+ ED++ F FG++ D + +D TG+ +G+GFV + + DA +A HM G L GR+
Sbjct: 27 ITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQ 86
Query: 92 LTVVFAEENRKKPS 105
+ +A PS
Sbjct: 87 IRTNWATRKPPAPS 100
>pdb|2DGO|A Chain A, Solution Structure Of The Rna Binding Domain In Cytotoxic
Granule-Associated Rna Binding Protein 1
pdb|2RNE|A Chain A, Solution Structure Of The Second Rna Recognition Motif
(Rrm) Of Tia-1
Length = 115
Score = 53.9 bits (128), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 32 MIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRE 91
+ ED++ F FGR+ D + +D TG+ +G+GFV + + DA +A M G L GR+
Sbjct: 27 ITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQ 86
Query: 92 LTVVFAEENRKKPS 105
+ +A RK P+
Sbjct: 87 IRTNWA--TRKPPA 98
>pdb|1FNX|H Chain H, Solution Structure Of The Huc Rbd1-Rbd2 Complexed With The
Au-Rich Element
Length = 174
Score = 50.4 bits (119), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 5/91 (5%)
Query: 21 SRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 80
+ L+ + M ++ + FG G ++ L RD TG+ G+GFV Y DP DA A
Sbjct: 5 TNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAIN 64
Query: 81 HMDGYLLLGRELTVVFAEENRKKPSEMRARE 111
++G L + + V +A +PS R+
Sbjct: 65 TLNGLKLQTKTIKVSYA-----RPSSASIRD 90
Score = 32.0 bits (71), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 31 AMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLG- 89
M +++ F Q+GR+ + D TG RG GF+++ +A +A ++G LG
Sbjct: 101 TMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGA 160
Query: 90 -RELTVVFAEE 99
+TV FA
Sbjct: 161 AEPITVKFANN 171
>pdb|1D8Z|A Chain A, Solution Structure Of The First Rna-Binding Domain (Rbd1)
Of Hu Antigen C (Huc)
Length = 89
Score = 50.1 bits (118), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 5/94 (5%)
Query: 17 VEEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAA 76
++ + L+ + M ++ + FG G ++ L RD TG+ G+GFV Y DP DA
Sbjct: 1 MDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDAD 60
Query: 77 DAKYHMDGYLLLGRELTVVFAEENRKKPSEMRAR 110
A ++G L + + V +A +PS R
Sbjct: 61 KAINTLNGLKLQTKTIKVSYA-----RPSSASIR 89
>pdb|2JRS|A Chain A, Solution Nmr Structure Of Caper Rrm2 Domain. Northeast
Structural Genomics Target Hr4730a
Length = 108
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 33 IVED-LRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRE 91
I ED LRG F FGR++ I L D TG +G+GF+ + D A A ++G+ L GR
Sbjct: 38 ITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRP 97
Query: 92 LTVVFAEE 99
+ V E
Sbjct: 98 MKVGHVTE 105
>pdb|2CQB|A Chain A, Solution Structure Of The Rna Recognition Motif In
Peptidyl- Prolyl Cis-Trans Isomerase E
Length = 102
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
Query: 21 SRLVFWFATFAMIVED--LRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADA 78
++ V + A V+D L F FG + DI +P DY T + RGF FV++ DAA A
Sbjct: 11 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAA 70
Query: 79 KYHMDGYLLLGRELTVVFAEENRKKPS 105
+M+ L GR + V A+ R K S
Sbjct: 71 IDNMNESELFGRTIRVNLAKPMRIKES 97
>pdb|1WHW|A Chain A, Solution Structure Of The N-Terminal Rna Binding Domain
From Hypothetical Protein Bab23448
Length = 99
Score = 47.0 bits (110), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 38/74 (51%)
Query: 22 RLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 81
RL ++ EDL F +G L +++ P D T +P+GF FV ++ P A A
Sbjct: 10 RLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAE 69
Query: 82 MDGYLLLGRELTVV 95
+DG + GR L V+
Sbjct: 70 VDGQVFQGRMLHVL 83
>pdb|1X5S|A Chain A, Solution Structure Of Rrm Domain In A18 Hnrnp
Length = 102
Score = 46.6 bits (109), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 3/80 (3%)
Query: 29 TFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLL 88
+F + L F ++G++ ++ + +D T RGFGFV + + DA DA M+G +
Sbjct: 21 SFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVD 80
Query: 89 GRELTVVFA---EENRKKPS 105
GR++ V A +NR PS
Sbjct: 81 GRQIRVDQAGKSSDNRSGPS 100
>pdb|2FY1|A Chain A, A Dual Mode Of Rna Recognition By The Rbmy Protein
Length = 116
Score = 46.6 bits (109), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 5/69 (7%)
Query: 37 LRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 96
L+ FG+ G + ++ L +D T + RGF F+ + +PADA +A M+G L G+ + V
Sbjct: 24 LKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKV-- 80
Query: 97 AEENRKKPS 105
E KKPS
Sbjct: 81 --EQAKKPS 87
>pdb|3LPY|A Chain A, Crystal Structure Of The Rrm Domain Of Cyp33
pdb|3LPY|B Chain B, Crystal Structure Of The Rrm Domain Of Cyp33
Length = 79
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Query: 21 SRLVFWFATFAMIVED--LRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADA 78
S+ V + A V+D L F FG + DI +P DY T + RGF FV++ DAA A
Sbjct: 1 SKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAA 60
Query: 79 KYHMDGYLLLGRELTVVFA 97
+M+ L GR + V A
Sbjct: 61 IDNMNESELFGRTIRVNLA 79
>pdb|2KU7|A Chain A, Solution Structure Of Mll1 Phd3-Cyp33 Rrm Chimeric Protein
Length = 140
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Query: 21 SRLVFWFATFAMIVED--LRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADA 78
++ V + A V+D L F FG + DI +P DY T + RGF FV++ DAA A
Sbjct: 62 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAA 121
Query: 79 KYHMDGYLLLGRELTVVFA 97
+M+ L GR + V A
Sbjct: 122 IDNMNESELFGRTIRVNLA 140
>pdb|3MDF|A Chain A, Crystal Structure Of The Rrm Domain Of Cyclophilin 33
pdb|3MDF|B Chain B, Crystal Structure Of The Rrm Domain Of Cyclophilin 33
Length = 85
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Query: 21 SRLVFWFATFAMIVED--LRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADA 78
++ V + A V+D L F FG + DI +P DY T + RGF FV++ DAA A
Sbjct: 6 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAA 65
Query: 79 KYHMDGYLLLGRELTVVFAE 98
+M+ L GR + V A+
Sbjct: 66 IDNMNESELFGRTIRVNLAK 85
>pdb|2DNZ|A Chain A, Solution Structure Of The Second Rna Binding Domain Of
Rna Binding Motif Protein 23
Length = 95
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 33 IVED-LRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRE 91
I ED LRG F FG++ +I L +D TG +G+GF+ + D A A ++G+ L GR
Sbjct: 17 ITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRP 76
Query: 92 LTVVFAEE 99
+ V E
Sbjct: 77 MRVGHVTE 84
>pdb|2KYX|A Chain A, Solution Structure Of The Rrm Domain Of Cyp33
Length = 83
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Query: 21 SRLVFWFATFAMIVED--LRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADA 78
++ V + A V+D L F FG + DI +P DY T + RGF FV++ DAA A
Sbjct: 4 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAA 63
Query: 79 KYHMDGYLLLGRELTVVFAE 98
+M+ L GR + V A+
Sbjct: 64 IDNMNESELFGRTIRVNLAK 83
>pdb|3BS9|A Chain A, X-Ray Structure Of Human Tia-1 Rrm2
pdb|3BS9|B Chain B, X-Ray Structure Of Human Tia-1 Rrm2
Length = 87
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 32/54 (59%)
Query: 44 FGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 97
FGR+ D + +D TG+ +G+GFV + + DA +A M G L GR++ +A
Sbjct: 30 FGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83
>pdb|1L3K|A Chain A, Up1, The Two Rna-Recognition Motif Domain Of Hnrnp A1
pdb|1U1K|A Chain A, Crystal Structure Of Up1 Complexed With D(Ttagggtt 7da
Ggg); A Human Telomeric Repeat Containing
7-Deaza-Adenine
pdb|1U1L|A Chain A, Crystal Structure Of Up1 Complexed With D(Ttagggtt Prn
Ggg); A Human Telomeric Repeat Containing Nebularine
pdb|1U1M|A Chain A, Crystal Structure Of Up1 Complexed With D(Ttagggtta 7gu
Gg); A Human Telomeric Repeat Containing
7-Deaza-Guanine
pdb|1U1N|A Chain A, Crystal Structure Of Up1 Complexed With D(Ttagggtta
(Prn) Gg); A Human Telomeric Repeat Containing
Nebularine
pdb|1U1O|A Chain A, Crystal Structure Of Up1 Complexed With
D(Ttagggttag(Di)g); A Human Telomeric Repeat Containing
Inosine
pdb|1U1P|A Chain A, Crystal Structure Of Up1 Complexed With D(Ttagggtta 2pr
Gg); A Human Telomeric Repeat Containing 2-Aminopurine
pdb|1U1Q|A Chain A, Crystal Structure Of Up1 Complexed With
D(Ttagggtta(Di)gg); A Human Telomeric Repeat Containing
Inosine
pdb|1U1R|A Chain A, Crystal Structure Of Up1 Complexed With
D(Ttagggttag(2pr) G); A Human Telomeric Repeat
Containing 2-Aminopurine
Length = 196
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 4/74 (5%)
Query: 18 EEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQY--IDPADA 75
E++ +L +F E LR F Q+G L D + RD T RGFGFV Y ++ DA
Sbjct: 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDA 70
Query: 76 A-DAKYH-MDGYLL 87
A +A+ H +DG ++
Sbjct: 71 AMNARPHKVDGRVV 84
Score = 32.3 bits (72), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 5/49 (10%)
Query: 37 LRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADA----KYH 81
LR F Q+G+++ I + D +G+ RGF FV + D D+ D KYH
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTF-DDHDSVDKIVIQKYH 168
>pdb|1PGZ|A Chain A, Crystal Structure Of Up1 Complexed With
D(Ttagggttag(6-Mi) G); A Human Telomeric Repeat
Containing 6-Methyl-8-(2-
Deoxy-Beta-Ribofuranosyl)isoxanthopteridine (6-Mi)
Length = 195
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 4/74 (5%)
Query: 18 EEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQY--IDPADA 75
E++ +L +F E LR F Q+G L D + RD T RGFGFV Y ++ DA
Sbjct: 10 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDA 69
Query: 76 A-DAKYH-MDGYLL 87
A +A+ H +DG ++
Sbjct: 70 AMNARPHKVDGRVV 83
Score = 32.3 bits (72), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 5/50 (10%)
Query: 37 LRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADA----KYHM 82
LR F Q+G+++ I + D +G+ RGF FV + D D+ D KYH
Sbjct: 120 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTF-DDHDSVDKIVIQKYHT 168
>pdb|2LYV|A Chain A, Solution Structure Of The Two Rrm Domains Of Hnrnp A1
(up1) Using Segmental Isotope Labeling
Length = 197
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 48/91 (52%), Gaps = 7/91 (7%)
Query: 18 EEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQY--IDPADA 75
E++ +L +F E LR F Q+G L D + RD T RGFGFV Y ++ DA
Sbjct: 12 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDA 71
Query: 76 A-DAKYH-MDGYLLLGRELTVVFAEENRKKP 104
A +A+ H +DG ++ E + E+ ++P
Sbjct: 72 AMNARPHKVDGRVV---EPKRAVSREDSQRP 99
Score = 32.3 bits (72), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 5/50 (10%)
Query: 37 LRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADA----KYHM 82
LR F Q+G+++ I + D +G+ RGF FV + D D+ D KYH
Sbjct: 122 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTF-DDHDSVDKIVIQKYHT 170
>pdb|2I2Y|A Chain A, Solution Structure Of The Rrm Of Srp20 Bound To The Rna
Cauc
Length = 150
Score = 43.5 bits (101), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 36 DLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVV 95
+L FG +G L+ +++ R+ P GF FV++ DP DAADA +DG L G + V
Sbjct: 89 ELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVE 143
Query: 96 FAEENRK 102
+ ++
Sbjct: 144 LSNGEKR 150
>pdb|2UP1|A Chain A, Structure Of Up1-Telomeric Dna Complex
pdb|1PO6|A Chain A, Crystal Structure Of Up1 Complexed With
D(Tagg(6mi)ttaggg): A Human Telomeric Repeat Containing
6-Methyl-8-(2-Deoxy-
Beta-Ribofuranosyl)isoxanthopteridine (6mi)
Length = 183
Score = 43.5 bits (101), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 4/74 (5%)
Query: 18 EEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQY--IDPADA 75
E++ +L +F E LR F Q+G L D + RD T RGFGFV Y ++ DA
Sbjct: 4 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDA 63
Query: 76 A-DAKYH-MDGYLL 87
A +A+ H +DG ++
Sbjct: 64 AMNARPHKVDGRVV 77
Score = 32.3 bits (72), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 5/49 (10%)
Query: 37 LRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADA----KYH 81
LR F Q+G+++ I + D +G+ RGF FV + D D+ D KYH
Sbjct: 114 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTF-DDHDSVDKIVIQKYH 161
>pdb|1HA1|A Chain A, Hnrnp A1 (Rbd1,2) From Homo Sapiens
Length = 184
Score = 43.5 bits (101), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 4/74 (5%)
Query: 18 EEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQY--IDPADA 75
E++ +L +F E LR F Q+G L D + RD T RGFGFV Y ++ DA
Sbjct: 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDA 70
Query: 76 A-DAKYH-MDGYLL 87
A +A+ H +DG ++
Sbjct: 71 AMNARPHKVDGRVV 84
Score = 32.3 bits (72), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 5/49 (10%)
Query: 37 LRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADA----KYH 81
LR F Q+G+++ I + D +G+ RGF FV + D D+ D KYH
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTF-DDHDSVDKIVIQKYH 168
>pdb|4ED5|A Chain A, Crystal Structure Of The Two N-Terminal Rrm Domains Of
Hur Complexed With Rna
pdb|4ED5|B Chain B, Crystal Structure Of The Two N-Terminal Rrm Domains Of
Hur Complexed With Rna
Length = 177
Score = 43.5 bits (101), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 36/77 (46%)
Query: 21 SRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 80
+ L+ + M ++LR F G ++ L RD G G+GFV Y+ DA A
Sbjct: 3 TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAIN 62
Query: 81 HMDGYLLLGRELTVVFA 97
++G L + + V +A
Sbjct: 63 TLNGLRLQSKTIKVSYA 79
>pdb|1UP1|A Chain A, Up1, The Two Rna-Recognition Motif Domain Of Hnrnp A1
Length = 182
Score = 43.5 bits (101), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 4/74 (5%)
Query: 18 EEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQY--IDPADA 75
E++ +L +F E LR F Q+G L D + RD T RGFGFV Y ++ DA
Sbjct: 9 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDA 68
Query: 76 A-DAKYH-MDGYLL 87
A +A+ H +DG ++
Sbjct: 69 AMNARPHKVDGRVV 82
Score = 32.3 bits (72), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 5/50 (10%)
Query: 37 LRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADA----KYHM 82
LR F Q+G+++ I + D +G+ RGF FV + D D+ D KYH
Sbjct: 119 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTF-DDHDSVDKIVIQKYHT 167
>pdb|4EGL|A Chain A, Crystal Structure Of Two Tandem Rna Recognition Motifs
Of Human Antigen R
Length = 177
Score = 43.5 bits (101), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 36/77 (46%)
Query: 21 SRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 80
+ L+ + M ++LR F G ++ L RD G G+GFV Y+ DA A
Sbjct: 3 TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAIN 62
Query: 81 HMDGYLLLGRELTVVFA 97
++G L + + V +A
Sbjct: 63 TLNGLRLQSKTIKVSYA 79
>pdb|2KXF|A Chain A, Solution Structure Of The First Two Rrm Domains Of
Fbp-Interacting Repressor (Fir)
pdb|2KXH|A Chain A, Solution Structure Of The First Two Rrm Domains Of Fir In
The Complex With Fbp Nbox Peptide
Length = 199
Score = 43.5 bits (101), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%)
Query: 35 EDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 94
+D++ F FG++K L RD TG+ +G+GF++Y + DA M+ + L G+ L V
Sbjct: 125 DDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRV 184
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 31/60 (51%)
Query: 35 EDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 94
+ +R F FG +K I + D T + +GF FV+Y P A A M+ +L GR + V
Sbjct: 28 DTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKV 87
>pdb|2I38|A Chain A, Solution Structure Of The Rrm Of Srp20
Length = 150
Score = 43.1 bits (100), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 36 DLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVV 95
+L FG +G L+ +++ R+ P GF FV++ DP DAADA +DG L G + V
Sbjct: 89 ELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRDLDGRTLCGCRVRVE 143
Query: 96 FAEENRK 102
+ ++
Sbjct: 144 LSNGEKR 150
>pdb|3HI9|A Chain A, The X-Ray Crystal Structure Of The First Rna Recognition
Motif (Rrm1) Of The Au-Rich Element (Are) Binding
Protein Hur At 2.0 Angstrom Resolution
pdb|3HI9|B Chain B, The X-Ray Crystal Structure Of The First Rna Recognition
Motif (Rrm1) Of The Au-Rich Element (Are) Binding
Protein Hur At 2.0 Angstrom Resolution
pdb|3HI9|C Chain C, The X-Ray Crystal Structure Of The First Rna Recognition
Motif (Rrm1) Of The Au-Rich Element (Are) Binding
Protein Hur At 2.0 Angstrom Resolution
pdb|3HI9|D Chain D, The X-Ray Crystal Structure Of The First Rna Recognition
Motif (Rrm1) Of The Au-Rich Element (Are) Binding
Protein Hur At 2.0 Angstrom Resolution
Length = 84
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 36/77 (46%)
Query: 21 SRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 80
+ L+ + M ++LR F G ++ L RD G G+GFV Y+ DA A
Sbjct: 5 TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAIN 64
Query: 81 HMDGYLLLGRELTVVFA 97
++G L + + V +A
Sbjct: 65 TLNGLRLQSKTIKVSYA 81
>pdb|1UAW|A Chain A, Solution Structure Of The N-Terminal Rna-Binding Domain
Of Mouse Musashi1
Length = 77
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 4/53 (7%)
Query: 35 EDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADA----ADAKYHMD 83
E LR FGQFG +K+ + RD T RGFGFV ++D A A +++ +D
Sbjct: 15 EGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELD 67
>pdb|2DH8|A Chain A, Solution Structure Of The N-Terminal Rna Binding Domain
In Daz-Associated Protein 1
Length = 105
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 31/55 (56%)
Query: 18 EEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDP 72
+EI +L ++ E LR F Q+G + D + +D T + RGFGFV++ DP
Sbjct: 14 DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDP 68
>pdb|2QFJ|A Chain A, Crystal Structure Of First Two Rrm Domains Of Fir Bound To
Ssdna From A Portion Of Fuse
pdb|2QFJ|B Chain B, Crystal Structure Of First Two Rrm Domains Of Fir Bound To
Ssdna From A Portion Of Fuse
Length = 216
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%)
Query: 35 EDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 94
+D++ F FG++K L RD TG+ +G+GF++Y + DA M+ + L G+ L V
Sbjct: 140 DDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRV 199
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 37/75 (49%)
Query: 20 ISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAK 79
+SR+ + + + +R F FG +K I + D T + +GF FV+Y P A A
Sbjct: 28 MSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLAL 87
Query: 80 YHMDGYLLLGRELTV 94
M+ +L GR + V
Sbjct: 88 EQMNSVMLGGRNIKV 102
>pdb|2ERR|A Chain A, Nmr Structure Of The Rna Binding Domain Of Human Fox-1 In
Complex With Ugcaugu
Length = 109
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 36 DLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVV 95
DLR FGQFG++ D+ + + +GFGFV + + ADA A+ + G ++ GR++ V
Sbjct: 45 DLRQMFGQFGKILDVEII--FNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 102
Query: 96 FA 97
A
Sbjct: 103 NA 104
>pdb|2CQ3|A Chain A, Solution Structure Of Rna Binding Domain In Rna Binding
Motif Protein 9
Length = 103
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
Query: 36 DLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 94
DLR FGQFG++ D+ + + +GFGFV + + ADA A+ + G ++ GR++ V
Sbjct: 31 DLRQMFGQFGKILDVEII--FNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 87
>pdb|2RS2|A Chain A, 1h, 13c, And 15n Chemical Shift Assignments For Musashi1
Rbd1:r(Guagu) Complex
Length = 109
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Query: 29 TFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADA----ADAKYHMD 83
++ E LR FGQFG +K+ + RD T RGFGFV ++D A A +++ +D
Sbjct: 34 SWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELD 92
>pdb|4FXV|A Chain A, Crystal Structure Of An Elav-Like Protein 1 (Elavl1)
From Homo Sapiens At 1.90 A Resolution
pdb|4FXV|B Chain B, Crystal Structure Of An Elav-Like Protein 1 (Elavl1)
From Homo Sapiens At 1.90 A Resolution
pdb|4FXV|C Chain C, Crystal Structure Of An Elav-Like Protein 1 (Elavl1)
From Homo Sapiens At 1.90 A Resolution
pdb|4FXV|D Chain D, Crystal Structure Of An Elav-Like Protein 1 (Elavl1)
From Homo Sapiens At 1.90 A Resolution
Length = 99
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%)
Query: 35 EDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 94
++LR F G ++ L RD G G+GFV Y+ DA A ++G L + + V
Sbjct: 34 DELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKV 93
Query: 95 VFA 97
+A
Sbjct: 94 SYA 96
>pdb|2KI2|A Chain A, Solution Structure Of Ss-Dna Binding Protein 12rnp2
Precursor, Hp0827(O25501_helpy) Form Helicobacter Pylori
Length = 90
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 30 FAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLG 89
++ E ++ F QFG++ ++ L D T +P+GFGFV+ + ++A +D +G
Sbjct: 11 YSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVE-MQEESVSEAIAKLDNTDFMG 69
Query: 90 RELTVVFAEENRKKPSE 106
R T+ E N KK E
Sbjct: 70 R--TIRVTEANPKKSLE 84
>pdb|1P1T|A Chain A, Nmr Structure Of The N-Terminal Rrm Domain Of Cleavage
Stimulation Factor 64 Kda Subunit
Length = 104
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 34/69 (49%)
Query: 35 EDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 94
E L+ F + G + L D TG+P+G+GF +Y D A A +++G GR L V
Sbjct: 23 EQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRV 82
Query: 95 VFAEENRKK 103
A + K
Sbjct: 83 DNAASEKNK 91
>pdb|3UWT|A Chain A, Crystal Structure Of A Rna Binding Domain Of Poly-U
Binding Splicing Factor 60kda (Puf60) From Homo Sapiens
At 2.50 A Resolution
Length = 200
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 34/60 (56%)
Query: 35 EDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 94
+D++ F FG++K L RD TG+ +G+GF++Y + DA + + L G+ L V
Sbjct: 124 DDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSXNLFDLGGQYLRV 183
Score = 32.3 bits (72), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 28/60 (46%)
Query: 35 EDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 94
+ +R F FG +K I D T + +GF FV+Y P A A + L GR + V
Sbjct: 27 DTIRQAFAPFGPIKSIDXSWDSVTXKHKGFAFVEYEVPEAAQLALEQXNSVXLGGRNIKV 86
>pdb|2CPH|A Chain A, Solution Structure Of The C-Terminal Rna Recognition
Motif Of Hypothetical Rna-Binding Protein Rbm19
Length = 107
Score = 40.0 bits (92), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Query: 18 EEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYY-TGEPRGFGFVQYIDPADAA 76
+ S+++ F ++R F FG LK + LP+ TG RGFGFV +I DA
Sbjct: 13 QTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAK 72
Query: 77 DA-KYHMDGYLLLGRELTVVFAEE 99
A L GR L + +A+
Sbjct: 73 KAFNALCHSTHLYGRRLVLEWADS 96
>pdb|2RRA|A Chain A, Solution Structure Of Rna Binding Domain In Human Tra2
Beta Protein In Complex With Rna (Gaagaa)
Length = 99
Score = 40.0 bits (92), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 34/62 (54%)
Query: 36 DLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVV 95
DLR F ++G + D+ + D + RGF FV + + DA +AK +G L GR + V
Sbjct: 31 DLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 90
Query: 96 FA 97
F+
Sbjct: 91 FS 92
>pdb|2RRB|A Chain A, Refinement Of Rna Binding Domain In Human Tra2 Beta
Protein
Length = 96
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 35/66 (53%)
Query: 36 DLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVV 95
DLR F ++G + D+ + D + RGF FV + + DA +AK +G L GR + V
Sbjct: 28 DLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 87
Query: 96 FAEENR 101
F+ R
Sbjct: 88 FSITKR 93
>pdb|1X5U|A Chain A, Solution Structure Of Rrm Domain In Splicing Factor 3b
Length = 105
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 36/65 (55%)
Query: 41 FGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEEN 100
F Q G + + ++P+D TG+ +G+GFV+++ DA A MD L G+ + V A +
Sbjct: 36 FLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKASAH 95
Query: 101 RKKPS 105
K S
Sbjct: 96 NKNLS 100
>pdb|2KXN|B Chain B, Nmr Structure Of Human Tra2beta1 Rrm In Complex With
Aagaac Rna
Length = 129
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 35/66 (53%)
Query: 36 DLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVV 95
DLR F ++G + D+ + D + RGF FV + + DA +AK +G L GR + V
Sbjct: 62 DLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 121
Query: 96 FAEENR 101
F+ R
Sbjct: 122 FSITKR 127
>pdb|3MD3|A Chain A, Crystal Structure Of The First Two Rrm Domains Of Yeast
Poly Binding Protein (Pub1)
Length = 166
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 30/63 (47%)
Query: 35 EDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 94
E LR F F ++ D TG RG+GFV + DA +A M G L GR L +
Sbjct: 102 ETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRI 161
Query: 95 VFA 97
+A
Sbjct: 162 NWA 164
>pdb|2CPF|A Chain A, Solution Structure Of The Penultimate Rna Recognition
Motif Of Hypothetical Rna-Binding Protein Rbm19
Length = 98
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 3/80 (3%)
Query: 29 TFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGE---PRGFGFVQYIDPADAADAKYHMDGY 85
F+ E L+G F + G +K + + GFGFV+Y P A A + G+
Sbjct: 14 NFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGH 73
Query: 86 LLLGRELTVVFAEENRKKPS 105
+ G +L V +E K S
Sbjct: 74 TVDGHKLEVRISERATKPAS 93
>pdb|1X4B|A Chain A, Solution Structure Of Rrm Domain In Heterogeneous
Nuclear Ribonucleaoproteins A2B1
Length = 116
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 45/98 (45%), Gaps = 13/98 (13%)
Query: 3 GDIAAPALEVTMAVV---------EEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLP 53
G + +E T+ V E+ +L +F E LR + Q+G+L D +
Sbjct: 1 GSSGSSGMEKTLETVPLERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVM 60
Query: 54 RDYYTGEPRGFGFVQYIDPA--DAADAK--YHMDGYLL 87
RD + RGFGFV + A DAA A + +DG ++
Sbjct: 61 RDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVV 98
>pdb|1U6F|A Chain A, Nmr Solution Structure Of Tcubp1, A Single Rbd-Unit From
Trypanosoma Cruzi
Length = 139
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 37/69 (53%)
Query: 36 DLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVV 95
LR F ++G ++ + + D T + RG+GFV++ + A A ++G+ +L + L V
Sbjct: 58 QLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVA 117
Query: 96 FAEENRKKP 104
A ++P
Sbjct: 118 LAASGHQRP 126
>pdb|3MD1|A Chain A, Crystal Structure Of The Second Rrm Domain Of Yeast
Poly(U)-Binding Protein (Pub1)
pdb|3MD1|B Chain B, Crystal Structure Of The Second Rrm Domain Of Yeast
Poly(U)-Binding Protein (Pub1)
Length = 83
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 30/63 (47%)
Query: 35 EDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 94
E LR F F ++ D TG RG+GFV + DA +A M G L GR L +
Sbjct: 16 ETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRI 75
Query: 95 VFA 97
+A
Sbjct: 76 NWA 78
>pdb|2J0Q|D Chain D, The Crystal Structure Of The Exon Junction Complex At
3.2 A Resolution
pdb|2J0Q|G Chain G, The Crystal Structure Of The Exon Junction Complex At
3.2 A Resolution
Length = 109
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 36/63 (57%)
Query: 35 EDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 94
ED+ F ++G +K+I+L D TG +G+ V+Y +A A ++G L+G+ ++V
Sbjct: 22 EDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISV 81
Query: 95 VFA 97
+
Sbjct: 82 DWC 84
>pdb|2J0S|D Chain D, The Crystal Structure Of The Exon Junction Complex At
2.2 A Resolution
Length = 89
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 36/63 (57%)
Query: 35 EDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 94
ED+ F ++G +K+I+L D TG +G+ V+Y +A A ++G L+G+ ++V
Sbjct: 22 EDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISV 81
Query: 95 VFA 97
+
Sbjct: 82 DWC 84
>pdb|2XB2|D Chain D, Crystal Structure Of The Core
Mago-Y14-Eif4aiii-Barentsz- Upf3b Assembly Shows How
The Ejc Is Bridged To The Nmd Machinery
pdb|2XB2|Z Chain Z, Crystal Structure Of The Core
Mago-Y14-Eif4aiii-Barentsz- Upf3b Assembly Shows How
The Ejc Is Bridged To The Nmd Machinery
Length = 90
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 36/63 (57%)
Query: 35 EDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 94
ED+ F ++G +K+I+L D TG +G+ V+Y +A A ++G L+G+ ++V
Sbjct: 22 EDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISV 81
Query: 95 VFA 97
+
Sbjct: 82 DWC 84
>pdb|2JWN|A Chain A, Solution Nmr Structure Of The Protease-Resistent Domain Of
Xenopus Laevis Epabp2
pdb|2JWN|B Chain B, Solution Nmr Structure Of The Protease-Resistent Domain Of
Xenopus Laevis Epabp2
Length = 124
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 30 FAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLG 89
+ +DL F G + I + D ++G P+G+ ++++ + ++ DA MD + G
Sbjct: 46 YGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAE-RNSVDAAVAMDETVFRG 104
Query: 90 RELTVVFAEEN 100
R + V+ N
Sbjct: 105 RTIKVLPKRTN 115
>pdb|3EX7|B Chain B, The Crystal Structure Of Ejc In Its Transition State
pdb|3EX7|G Chain G, The Crystal Structure Of Ejc In Its Transition State
Length = 126
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 36/63 (57%)
Query: 35 EDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 94
ED+ F ++G +K+I+L D TG +G+ V+Y +A A ++G L+G+ ++V
Sbjct: 37 EDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISV 96
Query: 95 VFA 97
+
Sbjct: 97 DWC 99
>pdb|3VF0|B Chain B, Raver1 In Complex With Metavinculin L954 Deletion Mutant
Length = 285
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 35 EDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 94
E+L PFG R +Y R TG+ +G+GF +Y+ AA AK + G L R L V
Sbjct: 113 EELVRPFGSLERCFLVYSER---TGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYV 169
Query: 95 VFAEENRKKPSEMRAR 110
+ + + P+ + +R
Sbjct: 170 HWTDAGQLTPALLHSR 185
>pdb|3SMZ|A Chain A, Human Raver1 Rrm1-3 Domains (Residues 39-320)
Length = 284
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 35 EDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 94
E+L PFG R +Y R TG+ +G+GF +Y+ AA AK + G L R L V
Sbjct: 113 EELVRPFGSLERCFLVYSER---TGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYV 169
Query: 95 VFAEENRKKPSEMRAR 110
+ + + P+ + +R
Sbjct: 170 HWTDAGQLTPALLHSR 185
>pdb|3H2U|B Chain B, Human Raver1 Rrm1, Rrm2, And Rrm3 Domains In Complex With
Human Vinculin Tail Domain Vt
pdb|3H2U|D Chain D, Human Raver1 Rrm1, Rrm2, And Rrm3 Domains In Complex With
Human Vinculin Tail Domain Vt
Length = 283
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 35 EDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 94
E+L PFG R +Y R TG+ +G+GF +Y+ AA AK + G L R L V
Sbjct: 111 EELVRPFGSLERCFLVYSER---TGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYV 167
Query: 95 VFAEENRKKPSEMRAR 110
+ + + P+ + +R
Sbjct: 168 HWTDAGQLTPALLHSR 183
>pdb|2HYI|B Chain B, Structure Of The Human Exon Junction Complex With A
Trapped Dead-Box Helicase Bound To Rna
pdb|2HYI|H Chain H, Structure Of The Human Exon Junction Complex With A
Trapped Dead-Box Helicase Bound To Rna
Length = 91
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 36/63 (57%)
Query: 35 EDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 94
ED+ F ++G +K+I+L D TG +G+ V+Y +A A ++G L+G+ ++V
Sbjct: 24 EDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISV 83
Query: 95 VFA 97
+
Sbjct: 84 DWC 86
>pdb|2HVZ|A Chain A, Solution Structure Of The Rrm Domain Of Sr Rich Factor
9g8
Length = 101
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 5/54 (9%)
Query: 41 FGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 94
F +G L+ +++ R+ P GF FV++ DP DA DA +DG ++ G + V
Sbjct: 21 FSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRV 69
>pdb|1P27|B Chain B, Crystal Structure Of The Human Y14MAGOH COMPLEX
pdb|1P27|D Chain D, Crystal Structure Of The Human Y14MAGOH COMPLEX
Length = 106
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 36/63 (57%)
Query: 35 EDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 94
ED+ F ++G +K+I+L D TG +G+ V+Y +A A ++G L+G+ ++V
Sbjct: 38 EDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISV 97
Query: 95 VFA 97
+
Sbjct: 98 DWC 100
>pdb|1X4A|A Chain A, Solution Structure Of Rrm Domain In Splicing Factor Sf2
Length = 109
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Query: 34 VEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELT 93
+D+ F ++G ++DI L ++ G P F FV++ DP DA DA Y DGY G L
Sbjct: 36 TKDIEDVFYKYGAIRDIDL-KNRRGGPP--FAFVEFEDPRDAEDAVYGRDGYDYDGYRLR 92
Query: 94 VVFAEENRKKPS 105
V F R S
Sbjct: 93 VEFPRSGRGTGS 104
>pdb|3CW1|K Chain K, Crystal Structure Of Human Spliceosomal U1 Snrnp
pdb|3CW1|6 Chain 6, Crystal Structure Of Human Spliceosomal U1 Snrnp
pdb|3CW1|7 Chain 7, Crystal Structure Of Human Spliceosomal U1 Snrnp
pdb|3CW1|8 Chain 8, Crystal Structure Of Human Spliceosomal U1 Snrnp
Length = 216
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 31/58 (53%)
Query: 37 LRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 94
LR F +G +K I++ +G+PRG+ F++Y D A H DG + GR + V
Sbjct: 119 LRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLV 176
>pdb|1HL6|A Chain A, A Novel Mode Of Rbd-Protein Recognition In The Y14-Mago
Complex
pdb|1HL6|C Chain C, A Novel Mode Of Rbd-Protein Recognition In The Y14-Mago
Complex
pdb|1RK8|A Chain A, Structure Of The Cytosolic Protein Pym Bound To The Mago-
Y14 Core Of The Exon Junction Complex
pdb|2X1G|A Chain A, Crystal Structure Of Importin13 - Mago-Y14 Complex
pdb|2X1G|C Chain C, Crystal Structure Of Importin13 - Mago-Y14 Complex
Length = 165
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Query: 35 EDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 94
++++ F +G +K+I+L D TG +G+ V+Y A AK ++G ++G+ + V
Sbjct: 87 DEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQV 146
Query: 95 VFA---EENRKKPSEMRAR 110
+ R K SE R R
Sbjct: 147 DWCFVKGPKRVKKSEKRRR 165
>pdb|2CQC|A Chain A, Solution Structure Of The Rna Recognition Motif In
ArginineSERINE-Rich Splicing Factor 10
Length = 95
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 32/59 (54%)
Query: 36 DLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 94
DLR F ++G + D+ + D + RGF FV + + DA +AK +G L GR + V
Sbjct: 31 DLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 89
>pdb|1SXL|A Chain A, Resonance Assignments And Solution Structure Of The Second
Rna-Binding Domain Of Sex-Lethal Determined By
Multidimensional Heteronuclear Magnetic Resonance
Spectroscopy
Length = 97
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 4/89 (4%)
Query: 18 EEISRLVFWFATFAMIVED--LRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADA 75
E I + + D L FG++G + + RD TG PRG FV+Y +A
Sbjct: 9 ESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEA 68
Query: 76 ADAKYHMDGYLLLG--RELTVVFAEENRK 102
+A ++ + G + L+V AEE+ K
Sbjct: 69 QEAISALNNVIPEGGSQPLSVRLAEEHGK 97
>pdb|3B4D|A Chain A, Crystal Structure Of Human Pabpn1 Rrm
pdb|3B4M|A Chain A, Crystal Structure Of Human Pabpn1 Rrm
pdb|3B4M|B Chain B, Crystal Structure Of Human Pabpn1 Rrm
pdb|3B4M|C Chain C, Crystal Structure Of Human Pabpn1 Rrm
pdb|3B4M|D Chain D, Crystal Structure Of Human Pabpn1 Rrm
Length = 96
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 30 FAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLG 89
+ E+L F G + + + D ++G P+GF ++++ D ++ +D L G
Sbjct: 15 YGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDK-ESVRTSLALDESLFRG 73
Query: 90 RELTVVFAEENR 101
R++ V+ NR
Sbjct: 74 RQIKVIPKRTNR 85
>pdb|1OO0|B Chain B, Crystal Structure Of The Drosophila Mago Nashi-Y14 Complex
Length = 110
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 35/63 (55%)
Query: 35 EDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 94
++++ F +G +K+I+L D TG +G+ V+Y A AK ++G ++G+ + V
Sbjct: 41 DEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQV 100
Query: 95 VFA 97
+
Sbjct: 101 DWC 103
>pdb|2MSS|A Chain A, Musashi1 Rbd2, Nmr
pdb|2MST|A Chain A, Musashi1 Rbd2, Nmr
Length = 75
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 22/36 (61%)
Query: 34 VEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQY 69
VED++ F QFG++ D L D T RGFGFV +
Sbjct: 13 VEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTF 48
>pdb|3SXL|A Chain A, Sex-Lethal Rna Recognition Domains 1 And 2 From Drosophila
Melanogaster
pdb|3SXL|B Chain B, Sex-Lethal Rna Recognition Domains 1 And 2 From Drosophila
Melanogaster
pdb|3SXL|C Chain C, Sex-Lethal Rna Recognition Domains 1 And 2 From Drosophila
Melanogaster
Length = 184
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 4/89 (4%)
Query: 18 EEISRLVFWFATFAMIVED--LRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADA 75
E I + + D L FG++G + + RD TG PRG FV+Y +A
Sbjct: 96 ESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEA 155
Query: 76 ADAKYHMDGYLLLG--RELTVVFAEENRK 102
+A ++ + G + L+V AEE+ K
Sbjct: 156 QEAISALNNVIPEGGSQPLSVRLAEEHGK 184
>pdb|3UCG|A Chain A, Crystal Structure Of A Rna Binding Domain Of Hypothetical
Polyadenylate-Binding Protein (Pabpn1) From Homo Sapiens
At 1.95 A Resolution
Length = 89
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 30 FAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLG 89
+ E+L F G + + + D ++G P+GF ++++ D ++ +D L G
Sbjct: 16 YGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDK-ESVRTSLALDESLFRG 74
Query: 90 RELTVVFAEENR 101
R++ V+ NR
Sbjct: 75 RQIKVIPKRTNR 86
>pdb|2CJK|A Chain A, Structure Of The Rna Binding Domain Of Hrp1 In Complex
With Rna
pdb|2KM8|C Chain C, Interdomain Rrm Packing Contributes To Rna Recognition
In The Rna15, Hrp1, Anchor Rna 3' Processing Ternary
Complex
Length = 167
Score = 36.6 bits (83), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 35 EDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPA---DAADAKYHMDGYLL 87
++LR FG++G + D+ + +D TG RGFGF+ + P+ + ++ +DG ++
Sbjct: 18 DNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKTQHILDGKVI 73
Score = 36.2 bits (82), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 41 FGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 77
F Q+G + D L D TG+ RGFGFV Y D ADA D
Sbjct: 108 FSQWGTIIDAQLMLDKDTGQSRGFGFVTY-DSADAVD 143
>pdb|2CQ0|A Chain A, Solution Structure Of Rna Binding Domain In Eukaryotic
Translation Initiation Factor 3 Subunit 4
Length = 103
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%)
Query: 36 DLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGY 85
DL+ F FG + IYL +D TG+ +GF F+ + DAA A + G+
Sbjct: 31 DLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGF 80
>pdb|3S7R|A Chain A, Crystal Structure Of A Heterogeneous Nuclear
Ribonucleoprotein AB (Hnrpab) From Homo Sapiens At 2.15
A Resolution
pdb|3S7R|B Chain B, Crystal Structure Of A Heterogeneous Nuclear
Ribonucleoprotein AB (Hnrpab) From Homo Sapiens At 2.15
A Resolution
Length = 87
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 35 EDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAA---DAKYH-MDGYLL 87
+DL+ F +FG + D + D TG RGFGF+ + D A D K H +DG ++
Sbjct: 26 KDLKDYFTKFGEVVDCTIKXDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVI 82
>pdb|2KRB|A Chain A, Solution Structure Of Eif3b-Rrm Bound To Eif3j Peptide
Length = 81
Score = 36.6 bits (83), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Query: 41 FGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLL 87
F +FG++ + + P + G+ +G+ F++Y PA A DA + DGY L
Sbjct: 28 FSKFGKITNDFYPEE--DGKTKGYIFLEYASPAHAVDAVKNADGYKL 72
>pdb|3SDE|A Chain A, Crystal Structure Of A Paraspeckle-Protein Heterodimer,
Pspc1NONO
Length = 261
Score = 36.2 bits (82), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 6/63 (9%)
Query: 35 EDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 94
ED + F ++G ++++ RD RGFGF++ A AK +DG +L R L +
Sbjct: 37 EDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRPLRI 90
Query: 95 VFA 97
FA
Sbjct: 91 RFA 93
>pdb|2NLW|A Chain A, Solution Structure Of The Rrm Domain Of Human Eukaryotic
Initiation Factor 3b
Length = 105
Score = 35.8 bits (81), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Query: 41 FGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLL 87
F +FG++ + + P + G+ +G+ F++Y PA A DA + DGY L
Sbjct: 42 FSKFGKITNDFYPEE--DGKTKGYIFLEYASPAHAVDAVKNADGYKL 86
>pdb|4A8X|A Chain A, Structure Of The Core Asap Complex
Length = 88
Score = 35.8 bits (81), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 41 FGQFGRLKDIYLPRD-YYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVV 95
F +G++K I +P + + +G+ +V++ +P +A A HMDG + G+E+T
Sbjct: 25 FSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITAT 80
>pdb|3PGW|S Chain S, Crystal Structure Of Human U1 Snrnp
pdb|3PGW|L Chain L, Crystal Structure Of Human U1 Snrnp
Length = 437
Score = 35.4 bits (80), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 32/66 (48%)
Query: 29 TFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLL 88
+ LR F +G +K I++ +G+PRG+ F++Y D A H DG +
Sbjct: 111 NYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKID 170
Query: 89 GRELTV 94
GR + V
Sbjct: 171 GRRVLV 176
>pdb|2D9P|A Chain A, Solution Structure Of Rna Binding Domain 4 In
Polyadenylation Binding Protein 3
Length = 103
Score = 35.4 bits (80), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
Query: 35 EDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 94
E LR F FG + + + G +GFGFV + P +A A M+G ++ + L V
Sbjct: 30 ERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 87
Query: 95 VFA---EENRKKPSE 106
A EE + PS
Sbjct: 88 ALAQRKEERQSGPSS 102
>pdb|2DGS|A Chain A, Solution Structure Of The Second Rna Binding Domain In
Daz- Associated Protein 1
Length = 99
Score = 35.0 bits (79), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 36 DLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVV 95
+LR F +FG + ++ + D PRGFGF+ + D + D +M + ++G+++ V
Sbjct: 26 ELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFED-EQSVDQAVNMHFHDIMGKKVEVK 84
Query: 96 FAEENRKKPS 105
AE K S
Sbjct: 85 RAEPRDSKSS 94
>pdb|1WTB|A Chain A, Complex Structure Of The C-Terminal Rna-Binding Domain
Of Hnrnp D (Auf1) With Telomere Dna
pdb|1X0F|A Chain A, Complex Structure Of The C-Terminal Rna-Binding Domain
Of Hnrnp D(Auf1) With Telomeric Dna
Length = 79
Score = 35.0 bits (79), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 35 EDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAA---DAKYHMDG 84
E +R FG FG ++ I LP D T + RGF F+ + + + KYH G
Sbjct: 16 EKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVG 68
>pdb|2CQG|A Chain A, Solution Structure Of The Rna Binding Domain Of Tar Dna-
Binding Protein-43
Length = 103
Score = 34.7 bits (78), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 30/55 (54%)
Query: 17 VEEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYID 71
V++ S L+ + +DL+ F FG + + + +D TG +GFGFV++ +
Sbjct: 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTE 66
>pdb|3SDE|B Chain B, Crystal Structure Of A Paraspeckle-Protein Heterodimer,
Pspc1NONO
Length = 261
Score = 34.7 bits (78), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 6/63 (9%)
Query: 35 EDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 94
E++R F ++G+ ++++ +D +GFGF++ A AK +D L G++L V
Sbjct: 37 EEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRV 90
Query: 95 VFA 97
FA
Sbjct: 91 RFA 93
>pdb|2E5H|A Chain A, Solution Structure Of Rna Binding Domain In Zinc Finger
Cchc-Type And Rna Binding Motif 1
Length = 94
Score = 34.7 bits (78), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 15/68 (22%), Positives = 33/68 (48%)
Query: 30 FAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLG 89
F++ DL F ++G++ + + +D T + +G F+ ++D A + ++ L G
Sbjct: 26 FSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFG 85
Query: 90 RELTVVFA 97
R + A
Sbjct: 86 RVIKASIA 93
>pdb|1IQT|A Chain A, Solution Structure Of The C-Terminal Rna-Binding Domain
Of Heterogeneous Nuclear Ribonucleoprotein D0 (Auf1)
Length = 75
Score = 34.7 bits (78), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 35 EDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAA---DAKYHMDG 84
E +R FG FG ++ I LP D T + RGF F+ + + + KYH G
Sbjct: 14 EKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVG 66
>pdb|2CPJ|A Chain A, Solution Structure Of The N-Terminal Rna Recognition
Motif Of Nono
pdb|2RS8|A Chain A, Solution Structure Of The N-Terminal Rna Recognition
Motif Of Nono
Length = 99
Score = 34.3 bits (77), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 6/63 (9%)
Query: 35 EDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 94
E++R F ++G+ ++++ +D +GFGF++ A AK +D L G++L V
Sbjct: 30 EEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRV 83
Query: 95 VFA 97
FA
Sbjct: 84 RFA 86
>pdb|1WF2|A Chain A, Solution Structure Of Rrm Domain In Hnrpc Protein
Length = 98
Score = 34.3 bits (77), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 11/81 (13%)
Query: 29 TFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLL 88
T + D+ F ++G++ + + GF FVQY++ +A A DG ++
Sbjct: 25 TLVVKKSDVEAIFSKYGKIVGCSVHK--------GFAFVQYVNERNARAAVAGEDGRMIA 76
Query: 89 GRELTVVFAEE---NRKKPSE 106
G+ L + A E NR PS
Sbjct: 77 GQVLDINLAAEPKVNRSGPSS 97
>pdb|1HD0|A Chain A, Heterogeneous Nuclear Ribonucleoprotein D0 (Hnrnp D0
Rbd1), Nmr
pdb|1HD1|A Chain A, Heterogeneous Nuclear Ribonucleoprotein D0 (Hnrnp D0
Rbd1), Nmr
Length = 75
Score = 33.9 bits (76), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 35 EDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQY 69
+DL+ F +FG + D L D TG RGFGFV +
Sbjct: 14 KDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLF 48
>pdb|2LXI|A Chain A, Nmr Structure Of The N-Terminal Rna Binding Domain 1
(Rrm1) Of The Protein Rbm10 From Homo Sapiens
Length = 91
Score = 33.9 bits (76), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 39/68 (57%), Gaps = 6/68 (8%)
Query: 35 EDLRGPFGQFG-RLKDIYLPRDYYTGEPRGFGFVQYIDPADAA---DAKYHMDGYLLLGR 90
+D+RG G + +++ L R+ +G+ RGF FV++ DA +A H +LG+
Sbjct: 16 DDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQH--SLNILGQ 73
Query: 91 ELTVVFAE 98
++++ +++
Sbjct: 74 KVSMHYSD 81
>pdb|2CPE|A Chain A, Solution Structure Of The Rna Recognition Motif Of Ewing
Sarcoma(Ews) Protein
Length = 113
Score = 33.9 bits (76), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 38/84 (45%), Gaps = 15/84 (17%)
Query: 31 AMIVEDLRGPFGQFGRLK----------DIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 80
++ ++DL F Q G +K IYL D TG+P+G V Y DP A A
Sbjct: 26 SVTLDDLADFFKQCGVVKMNKRTGQPMIHIYL--DKETGKPKGDATVSYEDPPTAKAAVE 83
Query: 81 HMDGYLLLGRELTVVFAEENRKKP 104
DG G +L V A RKKP
Sbjct: 84 WFDGKDFQGSKLKVSLA---RKKP 104
>pdb|2DO4|A Chain A, Solution Structure Of The Rna Binding Domain Of Squamous
Cell Carcinoma Antigen Recognized By T Cells 3
Length = 100
Score = 33.9 bits (76), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 30 FAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLL 87
F+ E+L G +KD+ L + G+P+G +V+Y + + A+ A MDG +
Sbjct: 27 FSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTI 83
>pdb|2DGU|A Chain A, Solution Structure Of The Rna Binding Domain In
Heterogeneous Nuclear Ribonucleoprotein Q
Length = 103
Score = 33.9 bits (76), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 15/91 (16%)
Query: 24 VFWFATFAMIV--EDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 81
V + A V E L F QFG+L+ + +DY F+ + + A A
Sbjct: 13 VLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDY--------AFIHFDERDGAVKAMEE 64
Query: 82 MDGYLLLGRELTVVFAEENRKKPSEMRARER 112
M+G L G + +VFA KP + + +ER
Sbjct: 65 MNGKDLEGENIEIVFA-----KPPDQKRKER 90
>pdb|2YWK|A Chain A, Crystal Structure Of Rrm-Domain Derived From Human
Putative Rna-Binding Protein 11
Length = 95
Score = 33.5 bits (75), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Query: 18 EEISRLVFWFATFAMIVED-LRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAA 76
EE R VF A + E+ L F Q G L + + +D G+P+ FGFV + P +
Sbjct: 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDR-EGKPKSFGFVCFKHPESVS 71
Query: 77 DAKYHMDGYLLLGRELTV 94
A ++G L GR + V
Sbjct: 72 YAIALLNGIRLYGRPINV 89
>pdb|1B7F|A Chain A, Sxl-Lethal ProteinRNA COMPLEX
pdb|1B7F|B Chain B, Sxl-Lethal ProteinRNA COMPLEX
Length = 168
Score = 33.1 bits (74), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Query: 18 EEISRLVFWFATFAMIVED--LRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADA 75
E I + + D L FG++G + + RD TG PRG FV+Y +A
Sbjct: 85 ESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEA 144
Query: 76 ADA 78
+A
Sbjct: 145 QEA 147
>pdb|1D9A|A Chain A, Solution Structure Of The Second Rna-Binding Domain
(Rbd2) Of Hu Antigen C (Huc)
Length = 85
Score = 32.3 bits (72), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 31 AMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLG- 89
M +++ F Q+GR+ + D TG RG GF+++ +A +A ++G LG
Sbjct: 12 TMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGA 71
Query: 90 -RELTVVFAEE 99
+TV FA
Sbjct: 72 AEPITVKFANN 82
>pdb|2FC8|A Chain A, Solution Structure Of The Rrm_1 Domain Of Ncl Protein
Length = 102
Score = 32.3 bits (72), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%)
Query: 55 DYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAE 98
D TG +GFGFV + DA AK M+ + G ++T+ +A+
Sbjct: 47 DRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAK 90
>pdb|2DIT|A Chain A, Solution Structure Of The Rrm_1 Domain Of Hiv Tat
Specific Factor 1 Variant
Length = 112
Score = 31.6 bits (70), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Query: 33 IVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGREL 92
I EDLR +FG+++ + L + P G V + DP +A +DG GR++
Sbjct: 39 IREDLRVECSKFGQIRKLLL----FDRHPDGVASVSFRDPEEADYCIQTLDGRWFGGRQI 94
Query: 93 T 93
T
Sbjct: 95 T 95
>pdb|2OJ9|A Chain A, Structure Of Igf-1r Kinase Domain Complexed With A
Benzimidazole Inhibitor
pdb|3NW5|A Chain A, Crystal Structure Of Insulin-Like Growth Factor 1 Receptor
(Igf-1r-Wt) Complex With A Carbon-Linked Proline
Isostere Inhibitor (11b)
pdb|3NW6|A Chain A, Crystal Structure Of Insulin-Like Growth Factor 1 Receptor
(Igf-1r-Wt) Complex With A Carbon-Linked Proline
Isostere Inhibitor (11a)
pdb|3NW7|A Chain A, Crystal Structure Of Insulin-Like Growth Factor 1 Receptor
(Igf-1r-Wt) Complex With A Carbon-Linked Proline
Isostere Inhibitor (34)
Length = 307
Score = 30.8 bits (68), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 28 ATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 80
A M+ ED G FG +DIY DYY +G V+++ P D +
Sbjct: 159 ARNCMVAEDFTVKIGDFGMTRDIY-ETDYYRKGGKGLLPVRWMSPESLKDGVF 210
>pdb|3QQU|A Chain A, Cocrystal Structure Of Unphosphorylated Igf With
Pyrimidine 8
pdb|3QQU|B Chain B, Cocrystal Structure Of Unphosphorylated Igf With
Pyrimidine 8
pdb|3QQU|C Chain C, Cocrystal Structure Of Unphosphorylated Igf With
Pyrimidine 8
pdb|3QQU|D Chain D, Cocrystal Structure Of Unphosphorylated Igf With
Pyrimidine 8
Length = 301
Score = 30.8 bits (68), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 28 ATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 80
A M+ ED G FG +DIY DYY +G V+++ P D +
Sbjct: 153 ARNCMVAEDFTVKIGDFGMTRDIY-ETDYYRKGGKGLLPVRWMSPESLKDGVF 204
>pdb|3I81|A Chain A, Crystal Structure Of Insulin-Like Growth Factor 1 Receptor
(Igf-1r-Wt) Complex With Bms-754807
[1-(4-((5-Cyclopropyl-
1h-Pyrazol-3-Yl)amino)pyrrolo[2,1-F][1,2,
4]triazin-2-Yl)-N-
(6-Fluoro-3-Pyridinyl)-2-Methyl-L-Prolinamide]
Length = 315
Score = 30.8 bits (68), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 28 ATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 80
A M+ ED G FG +DIY DYY +G V+++ P D +
Sbjct: 159 ARNCMVAEDFTVKIGDFGMTRDIY-ETDYYRKGGKGLLPVRWMSPESLKDGVF 210
>pdb|3O23|A Chain A, Human Unphosphorylated Igf1-R Kinase Domain In Complex
With An Hydantoin Inhibitor
Length = 305
Score = 30.8 bits (68), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 28 ATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 80
A M+ ED G FG +DIY DYY +G V+++ P D +
Sbjct: 157 ARNCMVAEDFTVKIGDFGMTRDIY-ETDYYRKGGKGLLPVRWMSPESLKDGVF 208
>pdb|3LVP|A Chain A, Crystal Structure Of Bisphosphorylated Igf1-R Kinase
Domain (2p) In Complex With A Bis-Azaindole Inhibitor
pdb|3LVP|B Chain B, Crystal Structure Of Bisphosphorylated Igf1-R Kinase
Domain (2p) In Complex With A Bis-Azaindole Inhibitor
pdb|3LVP|C Chain C, Crystal Structure Of Bisphosphorylated Igf1-R Kinase
Domain (2p) In Complex With A Bis-Azaindole Inhibitor
pdb|3LVP|D Chain D, Crystal Structure Of Bisphosphorylated Igf1-R Kinase
Domain (2p) In Complex With A Bis-Azaindole Inhibitor
Length = 336
Score = 30.8 bits (68), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 28 ATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 80
A M+ ED G FG +DIY DYY +G V+++ P D +
Sbjct: 188 ARNCMVAEDFTVKIGDFGMTRDIY-ETDYYRKGGKGLLPVRWMSPESLKDGVF 239
>pdb|2X1F|A Chain A, Structure Of Rna15 Rrm With Bound Rna (Gu)
Length = 96
Score = 30.8 bits (68), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Query: 36 DLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVV 95
DL G LK ++ P+ TG +G+ F+++ D +A A +++GY L R L
Sbjct: 21 DLCSNVGPVINLKMMFDPQ---TGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCG 77
Query: 96 FAEEN 100
++ +
Sbjct: 78 YSSNS 82
>pdb|1JQH|A Chain A, Igf-1 Receptor Kinase Domain
pdb|1JQH|B Chain B, Igf-1 Receptor Kinase Domain
pdb|1JQH|C Chain C, Igf-1 Receptor Kinase Domain
Length = 308
Score = 30.8 bits (68), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 28 ATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 80
A M+ ED G FG +DIY DYY +G V+++ P D +
Sbjct: 160 ARNCMVAEDFTVKIGDFGMTRDIY-ETDYYRKGGKGLLPVRWMSPESLKDGVF 211
>pdb|3LW0|A Chain A, Igf-1rk In Complex With Ligand Msc1609119a-1
pdb|3LW0|B Chain B, Igf-1rk In Complex With Ligand Msc1609119a-1
pdb|3LW0|C Chain C, Igf-1rk In Complex With Ligand Msc1609119a-1
pdb|3LW0|D Chain D, Igf-1rk In Complex With Ligand Msc1609119a-1
Length = 304
Score = 30.8 bits (68), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 28 ATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 80
A M+ ED G FG +DIY DYY +G V+++ P D +
Sbjct: 156 ARNCMVAEDFTVKIGDFGMTRDIY-ETDYYRKGGKGLLPVRWMSPESLKDGVF 207
>pdb|2YH0|A Chain A, Solution Structure Of The Closed Conformation Of Human
U2af65 Tandem Rrm1 And Rrm2 Domains
pdb|2YH1|A Chain A, Model Of Human U2af65 Tandem Rrm1 And Rrm2 Domains With
Eight-Site Uridine Binding
Length = 198
Score = 30.8 bits (68), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 26/51 (50%)
Query: 44 FGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 94
FG LK L +D TG +G+ F +Y+D A ++G L ++L V
Sbjct: 138 FGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLV 188
>pdb|2U2F|A Chain A, Solution Structure Of The Second Rna-Binding Domain Of
Hu2af65
Length = 85
Score = 30.8 bits (68), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%)
Query: 43 QFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 94
FG LK L +D TG +G+ F +Y+D A ++G L ++L V
Sbjct: 24 SFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLV 75
>pdb|2CQI|A Chain A, Solution Structure Of The Rna Binding Domain Of
Nucleolysin Tiar
Length = 103
Score = 30.8 bits (68), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 41 FGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 97
F Q G K + ++ + +P + FV++ + DAA A M+G +LG+E+ V +A
Sbjct: 36 FSQIGPCKSCKMITEHTSNDP--YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWA 90
>pdb|1M7N|A Chain A, Crystal Structure Of Unactivated Apo Insulin-Like Growth
Factor-1 Receptor Kinase Domain
pdb|1M7N|B Chain B, Crystal Structure Of Unactivated Apo Insulin-Like Growth
Factor-1 Receptor Kinase Domain
Length = 322
Score = 30.4 bits (67), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 28 ATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 80
A M+ ED G FG +DIY DYY +G V+++ P D +
Sbjct: 166 ARNCMVAEDFTVKIGDFGMTRDIY-ETDYYRKGGKGLLPVRWMSPESLKDGVF 217
>pdb|1P4O|A Chain A, Structure Of Apo Unactivated Igf-1r Kinase Domain At 1.5a
Resolution.
pdb|1P4O|B Chain B, Structure Of Apo Unactivated Igf-1r Kinase Domain At 1.5a
Resolution
Length = 322
Score = 30.4 bits (67), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 28 ATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 80
A M+ ED G FG +DIY DYY +G V+++ P D +
Sbjct: 166 ARNCMVAEDFTVKIGDFGMTRDIY-ETDYYRKGGKGLLPVRWMSPESLKDGVF 217
>pdb|2DGV|A Chain A, Solution Structure Of The Rna Binding Domain In
Heterogeneous Nuclear Ribonucleoprotein M
Length = 92
Score = 30.4 bits (67), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Query: 37 LRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 96
L+ F + G + +Y G+ +G G V++ P A A M+G L GRE+ V
Sbjct: 25 LKDKFNECGHV--LYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRI 82
Query: 97 AEENRKKPSE 106
+ N PS
Sbjct: 83 -DRNASGPSS 91
>pdb|2KM8|B Chain B, Interdomain Rrm Packing Contributes To Rna Recognition In
The Rna15, Hrp1, Anchor Rna 3' Processing Ternary
Complex
Length = 84
Score = 30.4 bits (67), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Query: 36 DLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVV 95
DL G LK ++ P+ TG +G+ F+++ D +A A +++GY L R L
Sbjct: 23 DLCSNVGPVINLKMMFDPQ---TGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCG 79
Query: 96 FAEEN 100
++ +
Sbjct: 80 YSSNS 84
>pdb|2G4B|A Chain A, Structure Of U2af65 Variant With Polyuridine Tract
Length = 172
Score = 30.4 bits (67), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 26/51 (50%)
Query: 44 FGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 94
FG LK L +D TG +G+ F +Y+D A ++G L ++L V
Sbjct: 118 FGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLV 168
>pdb|2DH9|A Chain A, Solution Structure Of The C-Terminal Rna Binding Domain In
Heterogeneous Nuclear Ribonucleoprotein M
Length = 89
Score = 30.4 bits (67), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Query: 37 LRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 96
L+ F + G + +Y G+ +G G V++ P A A M+G L GRE+ V
Sbjct: 22 LKDKFNECGHV--LYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRI 79
Query: 97 AEENRKKPSE 106
+ N PS
Sbjct: 80 -DRNASGPSS 88
>pdb|2X1A|A Chain A, Structure Of Rna15 Rrm With Rna Bound (G)
pdb|2X1B|A Chain A, Structure Of Rna15 Rrm
Length = 97
Score = 30.4 bits (67), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Query: 36 DLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVV 95
DL G LK ++ P+ TG +G+ F+++ D +A A +++GY L R L
Sbjct: 22 DLCSNVGPVINLKMMFDPQ---TGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCG 78
Query: 96 FAEEN 100
++ +
Sbjct: 79 YSSNS 83
>pdb|3VAF|A Chain A, Structure Of U2af65 Variant With Bru3 Dna
pdb|3VAF|B Chain B, Structure Of U2af65 Variant With Bru3 Dna
pdb|3VAG|A Chain A, Structure Of U2af65 Variant With Bru3c2 Dna
pdb|3VAG|B Chain B, Structure Of U2af65 Variant With Bru3c2 Dna
pdb|3VAH|A Chain A, Structure Of U2af65 Variant With Bru3c4 Dna
pdb|3VAH|B Chain B, Structure Of U2af65 Variant With Bru3c4 Dna
pdb|3VAI|A Chain A, Structure Of U2af65 Variant With Bru3c5 Dna
pdb|3VAI|B Chain B, Structure Of U2af65 Variant With Bru3c5 Dna
pdb|3VAJ|A Chain A, Structure Of U2af65 Variant With Bru5c6 Dna
pdb|3VAJ|B Chain B, Structure Of U2af65 Variant With Bru5c6 Dna
pdb|3VAK|A Chain A, Structure Of U2af65 Variant With Bru5 Dna
pdb|3VAK|B Chain B, Structure Of U2af65 Variant With Bru5 Dna
pdb|3VAL|A Chain A, Structure Of U2af65 Variant With Bru5c1 Dna
pdb|3VAL|B Chain B, Structure Of U2af65 Variant With Bru5c1 Dna
pdb|3VAL|D Chain D, Structure Of U2af65 Variant With Bru5c1 Dna
pdb|3VAL|I Chain I, Structure Of U2af65 Variant With Bru5c1 Dna
pdb|3VAM|A Chain A, Structure Of U2af65 Variant With Bru5c2 Dna
pdb|3VAM|B Chain B, Structure Of U2af65 Variant With Bru5c2 Dna
Length = 174
Score = 30.4 bits (67), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 26/51 (50%)
Query: 44 FGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 94
FG LK L +D TG +G+ F +Y+D A ++G L ++L V
Sbjct: 120 FGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLV 170
>pdb|3D2W|A Chain A, Crystal Structure Of Mouse Tdp-43 Rrm2 Domain In Complex
Wit
Length = 89
Score = 30.0 bits (66), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Query: 21 SRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYID 71
S++ T M E+L+ F Q+G + D+++P+ + R F FV + D
Sbjct: 12 SKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPF-----RAFAFVTFAD 57
>pdb|2DGP|A Chain A, Solution Structure Of The N-Terminal Rna Binding Domain
In Bruno-Like 4 Rna-Binding Protein
Length = 106
Score = 29.6 bits (65), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 27/45 (60%)
Query: 35 EDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAK 79
+DL+ F +FG++ ++ + +D +TG +G F+ Y + A A+
Sbjct: 28 KDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQ 72
>pdb|2CPX|A Chain A, Solution Structure Of Rna Binding Domain In Hypothetical
Protein Flj11016
Length = 115
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 14/83 (16%)
Query: 23 LVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 82
LV FA F ++ +GP QF + TG RG F+ + + A A + +
Sbjct: 42 LVSLFARF----QEKKGPPIQFRMM----------TGRMRGQAFITFPNKEIAWQALHLV 87
Query: 83 DGYLLLGRELTVVFAEENRKKPS 105
+GY L G+ L + F + +++ S
Sbjct: 88 NGYKLYGKILVIEFGKNKKQRSS 110
>pdb|2CPZ|A Chain A, Solution Structure Of Rna Binding Domain 3 In Cug
Triplet Repeat Rna-Binding Protein 1
pdb|2RQ4|A Chain A, Refinement Of Rna Binding Domain 3 In Cug Triplet Repeat
Rna-Binding Protein 1
pdb|2RQC|A Chain A, Solution Structure Of Rna-Binding Domain 3 Of Cugbp1 In
Complex With Rna (Ug)3
Length = 115
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 28/60 (46%)
Query: 35 EDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 94
+DL F FG + + D T + FGFV Y +P A A M+G+ + + L V
Sbjct: 40 QDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKV 99
>pdb|2DHG|A Chain A, Solution Structure Of The C-Terminal Rna Recognition Motif
In Trna Selenocysteine Associated Protein
Length = 104
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 58 TGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRE---LTVVFAEENRKKPSE 106
TG +G+GFV++ D + A G + LG + L+V + +R KP E
Sbjct: 47 TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPKASRVKPVE 98
>pdb|4FXW|A Chain A, Structure Of Phosphorylated Sf1 Complex With U2af65-uhm
Domain
pdb|4FXW|C Chain C, Structure Of Phosphorylated Sf1 Complex With U2af65-uhm
Domain
Length = 106
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Query: 33 IVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFG--FVQYIDPADAADAKYHMDGYLLLGR 90
IVED+R ++G +K I +PR E G G FV++ D A + G R
Sbjct: 29 IVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAXQGLTGRKFANR 88
Query: 91 ELTVVFAEEN 100
+ + + +
Sbjct: 89 VVVTKYCDPD 98
>pdb|2CQD|A Chain A, Solution Structure Of The Rna Recognition Motif In Rna-
Binding Region Containing Protein 1
Length = 116
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 37 LRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 96
LR F FG +++ + D TG+ RG+GFV D A AA+ ++ GR+ V
Sbjct: 34 LRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRA-AAERACKDPNPIIDGRKANVNL 92
Query: 97 A 97
A
Sbjct: 93 A 93
>pdb|1O0P|A Chain A, Solution Structure Of The Third Rna Recognition Motif
(Rrm) Of U2af65 In Complex With An N-Terminal Sf1
Peptide
Length = 104
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Query: 33 IVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFG--FVQYIDPADAADAKYHMDGYLLLGR 90
IVED+R ++G +K I +PR E G G FV++ D A + G R
Sbjct: 27 IVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANR 86
Query: 91 ELTVVFAEEN 100
+ + + +
Sbjct: 87 VVVTKYCDPD 96
>pdb|1OPI|A Chain A, Solution Structure Of The Third Rna Recognition Motif
(Rrm) Of U2af65 In Complex With An N-Terminal Sf1
Peptide
pdb|2M0G|B Chain B, Structure, Phosphorylation And U2af65 Binding Of The
Nterminal Domain Of Splicing Factor 1 During 3 Splice
Site Recognition
Length = 104
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Query: 33 IVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFG--FVQYIDPADAADAKYHMDGYLLLGR 90
IVED+R ++G +K I +PR E G G FV++ D A + G R
Sbjct: 27 IVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANR 86
Query: 91 ELTVVFAEEN 100
+ + + +
Sbjct: 87 VVVTKYCDPD 96
>pdb|3V4M|A Chain A, Crystal Structure Of A Rna Binding Domain Of A U2 Small
Nuclear Ribonucleoprotein Auxiliary Factor 2 (U2af) From
Mus Musculus At 1.80 A Resolution
pdb|3V4M|B Chain B, Crystal Structure Of A Rna Binding Domain Of A U2 Small
Nuclear Ribonucleoprotein Auxiliary Factor 2 (U2af) From
Mus Musculus At 1.80 A Resolution
Length = 105
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Query: 33 IVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFG--FVQYIDPADAADAKYHMDGYLLLGR 90
IVED+R ++G +K I +PR E G G FV++ D A + G R
Sbjct: 28 IVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAXQGLTGRKFANR 87
Query: 91 ELTVVFAEEN 100
+ + + +
Sbjct: 88 VVVTKYCDPD 97
>pdb|3E35|A Chain A, Actinobacteria-Specific Protein Of Unknown Function,
Sco1997
Length = 325
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Query: 53 PRDYYTGEPRGFGFVQYIDPADAAD--AKYHMDGYLLLGRELTVVFAEENRKKPSEMRAR 110
P+D YT EP+G V ++A YH DGY+ G + + P ++ AR
Sbjct: 4 PQDLYTWEPKGLAVVDXALAQESAGLVXLYHFDGYIDAGETGDQIVDQVLDSLPHQVVAR 63
>pdb|3D94|A Chain A, Crystal Structure Of The Insulin-Like Growth Factor-1
Receptor Kinase In Complex With Pqip
Length = 301
Score = 28.5 bits (62), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Query: 28 ATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 80
A + ED G FG +DIY DYY +G V+++ P D +
Sbjct: 153 ARNCXVAEDFTVKIGDFGMTRDIY-ETDYYRKGGKGLLPVRWMSPESLKDGVF 204
>pdb|2DGQ|A Chain A, Solution Structure Of The N-Terminal Rna Binding Domain
In Bruno-Like 6 Rna-Binding Protein
Length = 108
Score = 28.1 bits (61), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 35 EDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYI--DPADAADAKYH 81
+DL+ F +FGR+ ++ + +D TG +G F+ Y D A A + H
Sbjct: 30 QDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLTYCARDSALKAQSALH 78
>pdb|1WF0|A Chain A, Solution Structure Of Rrm Domain In Tar Dna-Binding
Protein- 43
Length = 88
Score = 28.1 bits (61), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
Query: 28 ATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYID 71
T M ++LR F Q+G + D+++P+ + R F FV + D
Sbjct: 13 CTGDMTEDELREFFSQYGDVMDVFIPKPF-----RAFAFVTFAD 51
>pdb|1P14|A Chain A, Crystal Structure Of A Catalytic-Loop Mutant Of The
Insulin Receptor Tyrosine Kinase
Length = 306
Score = 28.1 bits (61), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Query: 28 ATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 80
A M+ D G FG +DIY DYY +G V+++ P D +
Sbjct: 158 ARNCMVAHDFTVKIGDFGMTRDIY-ETDYYRKGGKGLLPVRWMAPESLKDGVF 209
>pdb|3EKK|A Chain A, Insulin Receptor Kinase Complexed With An Inhibitor
pdb|3EKN|A Chain A, Insulin Receptor Kinase Complexed With An Inhibitor
Length = 307
Score = 28.1 bits (61), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Query: 28 ATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 80
A M+ D G FG +DIY DYY +G V+++ P D +
Sbjct: 159 ARNCMVAHDFTVKIGDFGMTRDIY-ETDYYRKGGKGLLPVRWMAPESLKDGVF 210
>pdb|3ETA|A Chain A, Kinase Domain Of Insulin Receptor Complexed With A Pyrrolo
Pyridine Inhibitor
pdb|3ETA|B Chain B, Kinase Domain Of Insulin Receptor Complexed With A Pyrrolo
Pyridine Inhibitor
Length = 317
Score = 28.1 bits (61), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Query: 28 ATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 80
A M+ D G FG +DIY DYY +G V+++ P D +
Sbjct: 157 ARNCMVAHDFTVKIGDFGMTRDIY-ETDYYRKGGKGLLPVRWMAPESLKDGVF 208
>pdb|1H2T|Z Chain Z, Structure Of The Human Nuclear Cap-Binding-Complex (Cbc)
In Complex With A Cap Analogue M7gpppg
pdb|1H2U|X Chain X, Structure Of The Human Nuclear Cap-Binding-Complex (Cbc)
In Complex With A Cap Analogue M7gpppg
pdb|1H2U|Y Chain Y, Structure Of The Human Nuclear Cap-Binding-Complex (Cbc)
In Complex With A Cap Analogue M7gpppg
pdb|1H2V|Z Chain Z, Structure Of The Human Nuclear Cap-Binding-Complex (Cbc)
pdb|1N52|B Chain B, Cap Binding Complex
pdb|1N54|B Chain B, Cap Binding Complex M7gpppg Free
pdb|3FEX|B Chain B, Crystal Structure Of The Cbc-Importin Alpha Complex.
pdb|3FEY|B Chain B, Crystal Structure Of The Cbc-Importin Alpha Complex
Length = 156
Score = 27.7 bits (60), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 28/59 (47%)
Query: 29 TFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLL 87
+F E + F + G +K I + D GF FV+Y ADA +A +++G L
Sbjct: 48 SFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRL 106
>pdb|1IRK|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Human Insulin Receptor
Length = 306
Score = 27.7 bits (60), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Query: 28 ATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 80
A M+ D G FG +DIY DYY +G V+++ P D +
Sbjct: 158 ARNCMVAHDFTVKIGDFGMTRDIY-ETDYYRKGGKGLLPVRWMAPESLKDGVF 209
>pdb|2OSQ|A Chain A, Nmr Structure Of Rrm-1 Of Yeast Npl3 Protein
Length = 74
Score = 27.7 bits (60), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 10/81 (12%)
Query: 19 EISRLVFWFATFAMIVED--LRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAA 76
E+S + F + V++ L FG FG +K++ + GF FV++ + AA
Sbjct: 1 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKILN--------GFAFVEFEEAESAA 52
Query: 77 DAKYHMDGYLLLGRELTVVFA 97
A + G + L VV++
Sbjct: 53 KAIEEVHGKSFANQPLEVVYS 73
>pdb|2JVO|A Chain A, Segmental Isotope Labeling Of Npl3
Length = 108
Score = 27.7 bits (60), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 10/82 (12%)
Query: 19 EISRLVFWFATFAMIVED--LRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAA 76
E+S + F + V++ L FG FG +K++ + GF FV++ + AA
Sbjct: 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKILN--------GFAFVEFEEAESAA 79
Query: 77 DAKYHMDGYLLLGRELTVVFAE 98
A + G + L VV+++
Sbjct: 80 KAIEEVHGKSFANQPLEVVYSK 101
>pdb|2B4R|O Chain O, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Plasmodium Falciparum At 2.25
Angstrom Resolution Reveals Intriguing Extra Electron
Density In The Active Site
pdb|2B4R|P Chain P, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Plasmodium Falciparum At 2.25
Angstrom Resolution Reveals Intriguing Extra Electron
Density In The Active Site
pdb|2B4R|Q Chain Q, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Plasmodium Falciparum At 2.25
Angstrom Resolution Reveals Intriguing Extra Electron
Density In The Active Site
pdb|2B4R|R Chain R, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Plasmodium Falciparum At 2.25
Angstrom Resolution Reveals Intriguing Extra Electron
Density In The Active Site
pdb|2B4T|O Chain O, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Plasmodium Falciparum At 2.25
Angstrom Resolution Reveals Intriguing Extra Electron
Density In The Active Site
pdb|2B4T|P Chain P, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Plasmodium Falciparum At 2.25
Angstrom Resolution Reveals Intriguing Extra Electron
Density In The Active Site
pdb|2B4T|Q Chain Q, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Plasmodium Falciparum At 2.25
Angstrom Resolution Reveals Intriguing Extra Electron
Density In The Active Site
pdb|2B4T|R Chain R, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Plasmodium Falciparum At 2.25
Angstrom Resolution Reveals Intriguing Extra Electron
Density In The Active Site
Length = 345
Score = 27.7 bits (60), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 3/27 (11%)
Query: 81 HMDGYLLLGRELTVVFAEENRKKPSEM 107
H DG+LL+G + VFAE K PS++
Sbjct: 70 HADGFLLIGEKKVSVFAE---KDPSQI 93
>pdb|1YWG|O Chain O, The Structure Of Glyceraldehyde-3-Phosphate Dehydrogenase
From Plasmodium Falciparum
pdb|1YWG|P Chain P, The Structure Of Glyceraldehyde-3-Phosphate Dehydrogenase
From Plasmodium Falciparum
pdb|1YWG|Q Chain Q, The Structure Of Glyceraldehyde-3-Phosphate Dehydrogenase
From Plasmodium Falciparum
pdb|1YWG|R Chain R, The Structure Of Glyceraldehyde-3-Phosphate Dehydrogenase
From Plasmodium Falciparum
Length = 337
Score = 27.7 bits (60), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 3/27 (11%)
Query: 81 HMDGYLLLGRELTVVFAEENRKKPSEM 107
H DG+LL+G + VFAE K PS++
Sbjct: 62 HADGFLLIGEKKVSVFAE---KDPSQI 85
>pdb|2XS5|A Chain A, Crystal Structure Of The Rrm Domain Of Mouse Deleted In
Azoospermia-Like In Complex With Mvh Rna, Uguuc
pdb|2XS5|B Chain B, Crystal Structure Of The Rrm Domain Of Mouse Deleted In
Azoospermia-Like In Complex With Mvh Rna, Uguuc
pdb|2XS7|A Chain A, Crystal Structure Of The Rrm Domain Of Mouse Deleted In
Azoospermia-Like In Complex With Sycp3 Rna, Uuguuu
Length = 87
Score = 27.3 bits (59), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 36 DLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADA 75
++R F ++G +K++ + D TG +G+GFV + + D
Sbjct: 25 EIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDV 63
>pdb|3LUY|A Chain A, Putative Chorismate Mutase From Bifidobacterium
Adolescentis
Length = 329
Score = 27.3 bits (59), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 23/56 (41%)
Query: 39 GPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 94
GP G F + ++ EP+GF D DA H DG+ ++ E V
Sbjct: 13 GPQGTFTHQAAVNAAQELARFEPQGFDLXPXDDVPQILDAAQHGDGWGIVAWENNV 68
>pdb|3ZZY|A Chain A, Crystal Structure Of A Raver1 Pri3 Peptide In Complex
With Polypyrimidine Tract Binding Protein Rrm2
pdb|3ZZY|B Chain B, Crystal Structure Of A Raver1 Pri3 Peptide In Complex
With Polypyrimidine Tract Binding Protein Rrm2
pdb|3ZZZ|A Chain A, Crystal Structure Of A Raver1 Pri4 Peptide In Complex
With Polypyrimidine Tract Binding Protein Rrm2
pdb|3ZZZ|B Chain B, Crystal Structure Of A Raver1 Pri4 Peptide In Complex
With Polypyrimidine Tract Binding Protein Rrm2
Length = 130
Score = 26.9 bits (58), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 4/71 (5%)
Query: 14 MAVVEEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPA 73
MA + R++ + + ++ L F +FG + I +T + +QY DP
Sbjct: 22 MAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIIT----FTKNNQFQALLQYADPV 77
Query: 74 DAADAKYHMDG 84
A AK +DG
Sbjct: 78 SAQHAKLSLDG 88
>pdb|1SJR|A Chain A, Nmr Structure Of Rrm2 From Human Polypyrimidine Tract
Binding Protein Isoform 1 (Ptb1)
Length = 164
Score = 26.9 bits (58), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 4/71 (5%)
Query: 14 MAVVEEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPA 73
MA + R++ + + ++ L F +FG + I +T + +QY DP
Sbjct: 40 MAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKII----TFTKNNQFQALLQYADPV 95
Query: 74 DAADAKYHMDG 84
A AK +DG
Sbjct: 96 SAQHAKLSLDG 106
>pdb|2XS2|A Chain A, Crystal Structure Of The Rrm Domain Of Mouse Deleted In
Azoospermia-Like In Complex With Rna, Uuguucuu
Length = 102
Score = 26.9 bits (58), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 36 DLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADA 75
++R F ++G +K++ + D TG +G+GFV + + D
Sbjct: 25 EIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDV 63
>pdb|1QHU|A Chain A, Mammalian Blood Serum Haemopexin Deglycosylated And In
Complex With Its Ligand Haem
pdb|1QJS|A Chain A, Mammalian Blood Serum Haemopexin Glycosylated-Native
Protein And In Complex With Its Ligand Haem
pdb|1QJS|B Chain B, Mammalian Blood Serum Haemopexin Glycosylated-Native
Protein And In Complex With Its Ligand Haem
Length = 460
Score = 26.6 bits (57), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 66 FVQYIDPADAADAKYHMDGYLLLGRELTVVFAEENRK 102
+ +I P DAA H YL+ G ++ V +E+N K
Sbjct: 92 WKNFIGPVDAAFRHGHTSVYLIKGDKVWVYTSEKNEK 128
>pdb|2XSF|A Chain A, Crystal Structure Of The Rrm Domain Of Mouse Deleted In
Azoospermia-Like
Length = 89
Score = 26.6 bits (57), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 36 DLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADA 75
++R F ++G +K++ + D TG +G+GFV + + D
Sbjct: 26 EIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDV 64
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.143 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,408,008
Number of Sequences: 62578
Number of extensions: 143181
Number of successful extensions: 489
Number of sequences better than 100.0: 152
Number of HSP's better than 100.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 355
Number of HSP's gapped (non-prelim): 167
length of query: 193
length of database: 14,973,337
effective HSP length: 93
effective length of query: 100
effective length of database: 9,153,583
effective search space: 915358300
effective search space used: 915358300
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 49 (23.5 bits)