BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029462
(193 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SEU4|SR33_ARATH Serine/arginine-rich splicing factor 33 OS=Arabidopsis thaliana
GN=SR33 PE=1 SV=1
Length = 287
Score = 151 bits (382), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 110/165 (66%), Positives = 119/165 (72%), Gaps = 11/165 (6%)
Query: 35 EDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 94
EDLR F QFG +KDIYLPRDYYTG+PRGFGFVQ++DPADAADAK+HMDGYLLLGRELTV
Sbjct: 50 EDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHHMDGYLLLGRELTV 109
Query: 95 VFAEENRKKPSEMRARERFRSRSYDGRRS-----PPRYSRSPHYARGYSRSPDYYSPPPR 149
VFAEENRKKP+EMRARER R D RR+ S P R SRS DYYSPPPR
Sbjct: 110 VFAEENRKKPTEMRARERGGGRFRDRRRTPPRYYSRSRSPPPRRGRSRSRSGDYYSPPPR 169
Query: 150 RGRDSRSISPRYRRYR-ERSYSRSPYG----SRSYSPSRSRSRSL 189
R RSISPR RY RSYSRSP RS +P R +SRSL
Sbjct: 170 R-HHPRSISPREERYDGRRSYSRSPASDGSRGRSLTPVRGKSRSL 213
>sp|Q8WXF0|SRS12_HUMAN Serine/arginine-rich splicing factor 12 OS=Homo sapiens GN=SRSF12
PE=2 SV=1
Length = 261
Score = 84.3 bits (207), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 56/78 (71%)
Query: 35 EDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 94
EDLR FG++G + D+Y+P D+YT PRGF +VQ+ D DA DA Y+++ + GR++ +
Sbjct: 24 EDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFEDVRDAEDALYNLNRKWVCGRQIEI 83
Query: 95 VFAEENRKKPSEMRARER 112
FA+ +RK P +M+++ER
Sbjct: 84 QFAQGDRKTPGQMKSKER 101
>sp|Q9R0U0|SRS10_MOUSE Serine/arginine-rich splicing factor 10 OS=Mus musculus GN=Srsf10
PE=1 SV=2
Length = 262
Score = 83.6 bits (205), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 56/77 (72%)
Query: 35 EDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 94
EDLR FG++G + D+Y+P D+YT PRGF +VQ+ D DA DA +++D + GR++ +
Sbjct: 24 EDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHNLDRKWICGRQIEI 83
Query: 95 VFAEENRKKPSEMRARE 111
FA+ +RK P++M+A+E
Sbjct: 84 QFAQGDRKTPNQMKAKE 100
>sp|O75494|SRS10_HUMAN Serine/arginine-rich splicing factor 10 OS=Homo sapiens GN=SRSF10
PE=1 SV=1
Length = 262
Score = 83.6 bits (205), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 56/77 (72%)
Query: 35 EDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 94
EDLR FG++G + D+Y+P D+YT PRGF +VQ+ D DA DA +++D + GR++ +
Sbjct: 24 EDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHNLDRKWICGRQIEI 83
Query: 95 VFAEENRKKPSEMRARE 111
FA+ +RK P++M+A+E
Sbjct: 84 QFAQGDRKTPNQMKAKE 100
>sp|P30352|SRSF2_CHICK Serine/arginine-rich splicing factor 2 OS=Gallus gallus GN=SRSF2
PE=2 SV=1
Length = 221
Score = 69.7 bits (169), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 49/81 (60%)
Query: 17 VEEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAA 76
VE ++ L T+ + LR F ++GR+ D+Y+PRD YT E RGF FV++ D DA
Sbjct: 10 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAE 69
Query: 77 DAKYHMDGYLLLGRELTVVFA 97
DA MDG +L GREL V A
Sbjct: 70 DAMDAMDGAVLDGRELRVQMA 90
>sp|Q5R1W5|SRSF2_PANTR Serine/arginine-rich splicing factor 2 OS=Pan troglodytes
GN=SRSF2 PE=2 SV=3
Length = 221
Score = 68.9 bits (167), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 49/81 (60%)
Query: 17 VEEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAA 76
VE ++ L T+ + LR F ++GR+ D+Y+PRD YT E RGF FV++ D DA
Sbjct: 10 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAE 69
Query: 77 DAKYHMDGYLLLGRELTVVFA 97
DA MDG +L GREL V A
Sbjct: 70 DAMDAMDGAVLDGRELRVQMA 90
>sp|Q06A98|SRSF2_PIG Serine/arginine-rich splicing factor 2 OS=Sus scrofa GN=SRSF2
PE=2 SV=1
Length = 221
Score = 67.0 bits (162), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 49/81 (60%)
Query: 17 VEEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAA 76
VE ++ L T+ + LR F ++GR+ D+Y+PRD YT E RGF FV++ D DA
Sbjct: 10 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAE 69
Query: 77 DAKYHMDGYLLLGRELTVVFA 97
DA MDG +L GREL V A
Sbjct: 70 DAMDAMDGAVLDGRELRVQMA 90
>sp|Q6PDU1|SRSF2_RAT Serine/arginine-rich splicing factor 2 OS=Rattus norvegicus
GN=Srsf2 PE=1 SV=3
Length = 221
Score = 66.6 bits (161), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 49/81 (60%)
Query: 17 VEEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAA 76
VE ++ L T+ + LR F ++GR+ D+Y+PRD YT E RGF FV++ D DA
Sbjct: 10 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAE 69
Query: 77 DAKYHMDGYLLLGRELTVVFA 97
DA MDG +L GREL V A
Sbjct: 70 DAMDAMDGAVLDGRELRVQMA 90
>sp|Q62093|SRSF2_MOUSE Serine/arginine-rich splicing factor 2 OS=Mus musculus GN=Srsf2
PE=1 SV=4
Length = 221
Score = 66.6 bits (161), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 49/81 (60%)
Query: 17 VEEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAA 76
VE ++ L T+ + LR F ++GR+ D+Y+PRD YT E RGF FV++ D DA
Sbjct: 10 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAE 69
Query: 77 DAKYHMDGYLLLGRELTVVFA 97
DA MDG +L GREL V A
Sbjct: 70 DAMDAMDGAVLDGRELRVQMA 90
>sp|Q01130|SRSF2_HUMAN Serine/arginine-rich splicing factor 2 OS=Homo sapiens GN=SRSF2
PE=1 SV=4
Length = 221
Score = 66.6 bits (161), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 49/81 (60%)
Query: 17 VEEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAA 76
VE ++ L T+ + LR F ++GR+ D+Y+PRD YT E RGF FV++ D DA
Sbjct: 10 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAE 69
Query: 77 DAKYHMDGYLLLGRELTVVFA 97
DA MDG +L GREL V A
Sbjct: 70 DAMDAMDGAVLDGRELRVQMA 90
>sp|Q3MHR5|SRSF2_BOVIN Serine/arginine-rich splicing factor 2 OS=Bos taurus GN=SRSF2
PE=2 SV=3
Length = 221
Score = 66.6 bits (161), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 49/81 (60%)
Query: 17 VEEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAA 76
VE ++ L T+ + LR F ++GR+ D+Y+PRD YT E RGF FV++ D DA
Sbjct: 10 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAE 69
Query: 77 DAKYHMDGYLLLGRELTVVFA 97
DA MDG +L GREL V A
Sbjct: 70 DAMDAMDGAVLDGRELRVQMA 90
>sp|Q9BRL6|SRSF8_HUMAN Serine/arginine-rich splicing factor 8 OS=Homo sapiens GN=SRSF8
PE=1 SV=1
Length = 282
Score = 64.3 bits (155), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 50/86 (58%)
Query: 17 VEEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAA 76
V+ + L T+ + LR F ++GR+ D+Y+PR+ +T PRGF FV++ D DA
Sbjct: 10 VDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQ 69
Query: 77 DAKYHMDGYLLLGRELTVVFAEENRK 102
DA+ MDG L GREL V A R+
Sbjct: 70 DAEAAMDGAELDGRELRVQVARYGRR 95
>sp|Q09511|RSP4_CAEEL Probable splicing factor, arginine/serine-rich 4 OS=Caenorhabditis
elegans GN=rsp-4 PE=3 SV=1
Length = 196
Score = 57.0 bits (136), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 49/85 (57%)
Query: 17 VEEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAA 76
+ ++ L ++ DLR F ++G + D+++PRD Y+ + +GFGFV++ + DA
Sbjct: 15 INGLTSLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAE 74
Query: 77 DAKYHMDGYLLLGRELTVVFAEENR 101
A DG L+ GREL V A+ +R
Sbjct: 75 HALDRTDGKLVDGRELRVTLAKYDR 99
>sp|Q54Y98|TRA2_DICDI Transformer-2 protein homolog OS=Dictyostelium discoideum GN=tra2
PE=3 SV=1
Length = 326
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 55/116 (47%), Gaps = 3/116 (2%)
Query: 14 MAVVEEISRLVFWFATFAMIVE-DLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDP 72
+A S ++ F E DL+ F +FG++ + L D TG + FGFV + +
Sbjct: 105 LANTASPSNVLGVFGLAPQTEERDLKDEFSRFGKIDHVDLIMDRKTGRSKCFGFVYFENK 164
Query: 73 ADAADAKYHMDGYLLLGRELTVVFAEENRKKPSEMRARERFRSRSYDGRRSPPRYS 128
DA AK L G+ + F+ KKP E + F + YD RRSPPR+S
Sbjct: 165 EDAVRAKEECQDLQLHGKSIRTDFSAT--KKPHEPTPGKYFGNPRYDSRRSPPRFS 218
>sp|Q60899|ELAV2_MOUSE ELAV-like protein 2 OS=Mus musculus GN=Elavl2 PE=2 SV=1
Length = 360
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 41/77 (53%)
Query: 21 SRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 80
+ L+ + M E+L+ FG G ++ L RD TG+ G+GFV YIDP DA A
Sbjct: 39 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 98
Query: 81 HMDGYLLLGRELTVVFA 97
++G L + + V +A
Sbjct: 99 TLNGLRLQTKTIKVSYA 115
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 34/63 (53%)
Query: 41 FGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEEN 100
FG FG + ++ + RD+ T + +GFGFV + +AA A ++GY L R L V F
Sbjct: 297 FGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 356
Query: 101 RKK 103
K
Sbjct: 357 THK 359
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Query: 31 AMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGR 90
M ++L F Q+GR+ + D TG RG GF+++ +A +A ++G G
Sbjct: 135 TMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGA 194
Query: 91 E--LTVVFAEENRKKPSEMRARERFRS 115
+TV FA +K ++ + ++S
Sbjct: 195 TEPITVKFANNPSQKTNQAILSQLYQS 221
>sp|Q28GD4|ELAV2_XENTR ELAV-like protein 2 OS=Xenopus tropicalis GN=elavl2 PE=2 SV=2
Length = 375
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 37/66 (56%)
Query: 32 MIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRE 91
M E+L+ FG G ++ L RD TG+ G+GFV YIDP DA A ++G L +
Sbjct: 78 MTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKT 137
Query: 92 LTVVFA 97
+ V +A
Sbjct: 138 IKVSYA 143
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 34/63 (53%)
Query: 41 FGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEEN 100
FG FG + ++ + RD+ T + +GFGFV + +AA A ++GY L R L V F
Sbjct: 312 FGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTSK 371
Query: 101 RKK 103
K
Sbjct: 372 THK 374
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 53/115 (46%), Gaps = 7/115 (6%)
Query: 31 AMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGR 90
M ++L F Q+GR+ + D TG RG GF+++ +A +A ++G G
Sbjct: 163 TMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPPGA 222
Query: 91 E--LTVVFAEENRKKPSEMRARERFRS--RSYDG--RRSPPRYSR-SPHYARGYS 138
+TV FA +K + + ++S R Y G + R+SR SP G +
Sbjct: 223 TEPITVKFANNPSQKVNHTILSQLYQSPNRRYPGPLAQQAQRFSRFSPMTIDGMT 277
>sp|Q5R9Z6|ELAV2_PONAB ELAV-like protein 2 OS=Pongo abelii GN=ELAVL2 PE=2 SV=1
Length = 359
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 41/77 (53%)
Query: 21 SRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 80
+ L+ + M E+L+ FG G ++ L RD TG+ G+GFV YIDP DA A
Sbjct: 39 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 98
Query: 81 HMDGYLLLGRELTVVFA 97
++G L + + V +A
Sbjct: 99 TLNGLRLQTKTIKVSYA 115
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 34/63 (53%)
Query: 41 FGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEEN 100
FG FG + ++ + RD+ T + +GFGFV + +AA A ++GY L R L V F
Sbjct: 296 FGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 355
Query: 101 RKK 103
K
Sbjct: 356 THK 358
Score = 32.7 bits (73), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Query: 31 AMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGR 90
M ++L F Q+GR+ + D TG RG GF+++ +A +A ++G G
Sbjct: 135 TMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGA 194
Query: 91 E--LTVVFAEENRKKPSEMRARERFRS 115
+TV FA +K ++ + ++S
Sbjct: 195 TEPITVKFANNPSQKTNQAILSQLYQS 221
>sp|Q12926|ELAV2_HUMAN ELAV-like protein 2 OS=Homo sapiens GN=ELAVL2 PE=1 SV=2
Length = 359
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 41/77 (53%)
Query: 21 SRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 80
+ L+ + M E+L+ FG G ++ L RD TG+ G+GFV YIDP DA A
Sbjct: 39 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 98
Query: 81 HMDGYLLLGRELTVVFA 97
++G L + + V +A
Sbjct: 99 TLNGLRLQTKTIKVSYA 115
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 34/63 (53%)
Query: 41 FGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEEN 100
FG FG + ++ + RD+ T + +GFGFV + +AA A ++GY L R L V F
Sbjct: 296 FGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 355
Query: 101 RKK 103
K
Sbjct: 356 THK 358
Score = 32.7 bits (73), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Query: 31 AMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGR 90
M ++L F Q+GR+ + D TG RG GF+++ +A +A ++G G
Sbjct: 135 TMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGA 194
Query: 91 E--LTVVFAEENRKKPSEMRARERFRS 115
+TV FA +K ++ + ++S
Sbjct: 195 TEPITVKFANNPSQKTNQAILSQLYQS 221
>sp|O09032|ELAV4_RAT ELAV-like protein 4 OS=Rattus norvegicus GN=Elavl4 PE=1 SV=1
Length = 373
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 44/88 (50%)
Query: 10 LEVTMAVVEEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQY 69
++ A + + L+ + M E+ R FG G ++ L RD TG+ G+GFV Y
Sbjct: 28 MQTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNY 87
Query: 70 IDPADAADAKYHMDGYLLLGRELTVVFA 97
IDP DA A ++G L + + V +A
Sbjct: 88 IDPKDAEKAINTLNGLRLQTKTIKVSYA 115
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 34/63 (53%)
Query: 41 FGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEEN 100
FG FG + ++ + RD+ T + +GFGFV + +AA A ++GY L R L V F
Sbjct: 310 FGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 369
Query: 101 RKK 103
K
Sbjct: 370 AHK 372
Score = 35.4 bits (80), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Query: 31 AMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGR 90
M ++L F Q+GR+ + D TG RG GF+++ +A +A ++G G
Sbjct: 135 TMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGA 194
Query: 91 E--LTVVFAEENRKKPSEMRARERFRS 115
+TV FA +K S+ + ++S
Sbjct: 195 TEPITVKFANNPSQKSSQALLSQLYQS 221
>sp|P53927|NOP15_YEAST Ribosome biogenesis protein 15 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=NOP15 PE=1 SV=1
Length = 220
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 35/54 (64%)
Query: 41 FGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 94
F QFG LK++ L R+ TG R +GF+++++ DA A+ M+ YLL+G L V
Sbjct: 111 FAQFGDLKEVRLARNKKTGNSRHYGFLEFVNKEDAMIAQESMNNYLLMGHLLQV 164
>sp|P70318|TIAR_MOUSE Nucleolysin TIAR OS=Mus musculus GN=Tial1 PE=2 SV=1
Length = 392
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 2/80 (2%)
Query: 32 MIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRE 91
+ ED++ F FG++ D + +D TG+ +G+GFV + + DA +A HM G L GR+
Sbjct: 125 ITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQ 184
Query: 92 LTVVFAEENRKKPSEMRARE 111
+ +A RK P+ +E
Sbjct: 185 IRTNWA--TRKPPAPKSTQE 202
>sp|Q01085|TIAR_HUMAN Nucleolysin TIAR OS=Homo sapiens GN=TIAL1 PE=1 SV=1
Length = 375
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 32 MIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRE 91
+ ED++ F FG++ D + +D TG+ +G+GFV + + DA +A HM G L GR+
Sbjct: 108 ITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQ 167
Query: 92 LTVVFAEENRKKPSEMRARER 112
+ +A RK P+ +E
Sbjct: 168 IRTNWA--TRKPPAPKSTQEN 186
>sp|Q61701|ELAV4_MOUSE ELAV-like protein 4 OS=Mus musculus GN=Elavl4 PE=1 SV=1
Length = 385
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 44/88 (50%)
Query: 10 LEVTMAVVEEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQY 69
++ A + + L+ + M E+ R FG G ++ L RD TG+ G+GFV Y
Sbjct: 40 MQTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNY 99
Query: 70 IDPADAADAKYHMDGYLLLGRELTVVFA 97
IDP DA A ++G L + + V +A
Sbjct: 100 IDPKDAEKAINTLNGLRLQTKTIKVSYA 127
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 34/63 (53%)
Query: 41 FGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEEN 100
FG FG + ++ + RD+ T + +GFGFV + +AA A ++GY L R L V F
Sbjct: 322 FGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 381
Query: 101 RKK 103
K
Sbjct: 382 AHK 384
Score = 35.4 bits (80), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Query: 31 AMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGR 90
M ++L F Q+GR+ + D TG RG GF+++ +A +A ++G G
Sbjct: 147 TMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGA 206
Query: 91 E--LTVVFAEENRKKPSEMRARERFRS 115
+TV FA +K S+ + ++S
Sbjct: 207 TEPITVKFANNPSQKSSQALLSQLYQS 233
>sp|P26378|ELAV4_HUMAN ELAV-like protein 4 OS=Homo sapiens GN=ELAVL4 PE=1 SV=2
Length = 380
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 40/77 (51%)
Query: 21 SRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 80
+ L+ + M E+ R FG G ++ L RD TG+ G+GFV YIDP DA A
Sbjct: 46 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 105
Query: 81 HMDGYLLLGRELTVVFA 97
++G L + + V +A
Sbjct: 106 TLNGLRLQTKTIKVSYA 122
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 34/63 (53%)
Query: 41 FGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEEN 100
FG FG + ++ + RD+ T + +GFGFV + +AA A ++GY L R L V F
Sbjct: 317 FGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 376
Query: 101 RKK 103
K
Sbjct: 377 AHK 379
Score = 35.4 bits (80), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Query: 31 AMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGR 90
M ++L F Q+GR+ + D TG RG GF+++ +A +A ++G G
Sbjct: 142 TMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGA 201
Query: 91 E--LTVVFAEENRKKPSEMRARERFRS 115
+TV FA +K S+ + ++S
Sbjct: 202 TEPITVKFANNPSQKSSQALLSQLYQS 228
>sp|Q8CH84|ELAV2_RAT ELAV-like protein 2 OS=Rattus norvegicus GN=Elavl2 PE=2 SV=1
Length = 359
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 37/66 (56%)
Query: 32 MIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRE 91
M E+L+ FG G ++ L RD TG+ G+GFV YIDP DA A ++G L +
Sbjct: 50 MTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKT 109
Query: 92 LTVVFA 97
+ V +A
Sbjct: 110 IKVSYA 115
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 34/63 (53%)
Query: 41 FGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEEN 100
FG FG + ++ + RD+ T + +GFGFV + +AA A ++GY L R L V F
Sbjct: 296 FGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 355
Query: 101 RKK 103
K
Sbjct: 356 THK 358
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Query: 31 AMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGR 90
M ++L F Q+GR+ + D TG RG GF+++ +A +A ++G G
Sbjct: 135 TMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGA 194
Query: 91 E--LTVVFAEENRKKPSEMRARERFRS 115
+TV FA +K ++ + ++S
Sbjct: 195 TEPITVKFANNPSQKTNQAILSQLYQS 221
>sp|P52912|TIA1_MOUSE Nucleolysin TIA-1 OS=Mus musculus GN=Tia1 PE=1 SV=1
Length = 386
Score = 54.7 bits (130), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 32 MIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRE 91
+ ED++ F FGR+ D + +D TG+ +G+GFV + + DA +A M G L GR+
Sbjct: 117 ITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQ 176
Query: 92 LTVVFAEENRKKPSEMRARE-RFRSRSYD 119
+ +A RK P+ E + SYD
Sbjct: 177 IRTNWA--TRKPPAPKSTYESNTKQLSYD 203
>sp|Q7ZWA3|RBMX_DANRE RNA-binding motif protein, X chromosome OS=Danio rerio GN=rbmx
PE=2 SV=1
Length = 379
Score = 54.7 bits (130), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 41/84 (48%)
Query: 14 MAVVEEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPA 73
MA + +L + L F +FGR+ ++ L +D T + RGF FV Y +P
Sbjct: 1 MAEADRPGKLFIGGLNTETSEKVLEAYFSKFGRISEVLLMKDRETNKSRGFAFVTYENPG 60
Query: 74 DAADAKYHMDGYLLLGRELTVVFA 97
DA DA M+G L G+ + V A
Sbjct: 61 DAKDAAREMNGKPLDGKPIKVEQA 84
>sp|P31483|TIA1_HUMAN Nucleolysin TIA-1 isoform p40 OS=Homo sapiens GN=TIA1 PE=1 SV=3
Length = 386
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 32 MIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRE 91
+ ED++ F FGR+ D + +D TG+ +G+GFV + + DA +A M G L GR+
Sbjct: 117 ITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQ 176
Query: 92 LTVVFAEENRKKPSEMRARE-RFRSRSYD 119
+ +A RK P+ E + SYD
Sbjct: 177 IRTNWA--TRKPPAPKSTYESNTKQLSYD 203
>sp|Q91VM5|RMXL1_MOUSE RNA binding motif protein, X-linked-like-1 OS=Mus musculus
GN=Rbmxl1 PE=1 SV=1
Length = 388
Score = 53.5 bits (127), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 44/92 (47%), Gaps = 4/92 (4%)
Query: 14 MAVVEEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPA 73
M + +L + L FG++GR+ +I L +D T + RGF FV + PA
Sbjct: 1 MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPA 60
Query: 74 DAADAKYHMDGYLLLGRELTVVFAEENRKKPS 105
DA DA M+G L G+ + V E KPS
Sbjct: 61 DAKDAARDMNGKSLDGKAIKV----EQATKPS 88
>sp|Q4V898|RBMX_RAT RNA-binding motif protein, X chromosome OS=Rattus norvegicus
GN=Rbmx PE=1 SV=1
Length = 390
Score = 53.5 bits (127), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 44/92 (47%), Gaps = 4/92 (4%)
Query: 14 MAVVEEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPA 73
M + +L + L FG++GR+ ++ L +D T + RGF FV + PA
Sbjct: 1 MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPA 60
Query: 74 DAADAKYHMDGYLLLGRELTVVFAEENRKKPS 105
DA DA M+G L G+ + V E KPS
Sbjct: 61 DAKDAARDMNGKSLDGKAIKV----EQATKPS 88
>sp|O13620|MRD1_SCHPO Multiple RNA-binding domain-containing protein 1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=mrd1 PE=3 SV=1
Length = 833
Score = 53.5 bits (127), Expect = 9e-07, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 47/88 (53%)
Query: 11 EVTMAVVEEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYI 70
E + ++ E RL T++ +DL+ FG FG+L+ +++P D T P+GF ++ +
Sbjct: 313 ERNIQLISETKRLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFH 372
Query: 71 DPADAADAKYHMDGYLLLGRELTVVFAE 98
D DA A +D GR L V+ A+
Sbjct: 373 DADDAVRAYLELDAKPFQGRLLHVLPAK 400
Score = 38.1 bits (87), Expect = 0.037, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 30 FAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLG 89
F +D++ G +G+L+ + +P+ + RGF F +++ +AA+A + LLG
Sbjct: 730 FEATKKDVQSLLGAYGQLRSVRVPKKF-DRSARGFAFAEFVTAREAANAMRALKNTHLLG 788
Query: 90 RELTVVFA 97
R L + +A
Sbjct: 789 RHLVLQYA 796
Score = 35.8 bits (81), Expect = 0.17, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 32/54 (59%)
Query: 63 GFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEENRKKPSEMRARERFRSR 116
GFGFV++ D A A A + M+G++L G +L + + + +E+R ++ + +
Sbjct: 666 GFGFVEFKDKASAVAAMHAMNGFVLDGHKLEIKLSHQGVDAAAEVRKQDSSKPK 719
>sp|A5A6M3|RBMX_PANTR RNA-binding motif protein, X chromosome OS=Pan troglodytes GN=RBMX
PE=2 SV=1
Length = 391
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 44/92 (47%), Gaps = 4/92 (4%)
Query: 14 MAVVEEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPA 73
M + +L + L FG++GR+ ++ L +D T + RGF FV + PA
Sbjct: 1 MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPA 60
Query: 74 DAADAKYHMDGYLLLGRELTVVFAEENRKKPS 105
DA DA M+G L G+ + V E KPS
Sbjct: 61 DAKDAARDMNGKSLDGKAIKV----EQATKPS 88
>sp|Q9WV02|RBMX_MOUSE RNA-binding motif protein, X chromosome OS=Mus musculus GN=Rbmx
PE=1 SV=1
Length = 391
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 44/92 (47%), Gaps = 4/92 (4%)
Query: 14 MAVVEEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPA 73
M + +L + L FG++GR+ ++ L +D T + RGF FV + PA
Sbjct: 1 MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPA 60
Query: 74 DAADAKYHMDGYLLLGRELTVVFAEENRKKPS 105
DA DA M+G L G+ + V E KPS
Sbjct: 61 DAKDAARDMNGKSLDGKAIKV----EQATKPS 88
>sp|P38159|RBMX_HUMAN RNA-binding motif protein, X chromosome OS=Homo sapiens GN=RBMX
PE=1 SV=3
Length = 391
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 44/92 (47%), Gaps = 4/92 (4%)
Query: 14 MAVVEEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPA 73
M + +L + L FG++GR+ ++ L +D T + RGF FV + PA
Sbjct: 1 MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPA 60
Query: 74 DAADAKYHMDGYLLLGRELTVVFAEENRKKPS 105
DA DA M+G L G+ + V E KPS
Sbjct: 61 DAKDAARDMNGKSLDGKAIKV----EQATKPS 88
>sp|Q28FX0|ELAV3_XENTR ELAV-like protein 3 OS=Xenopus tropicalis GN=elavl3 PE=2 SV=1
Length = 343
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 36/66 (54%)
Query: 32 MIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRE 91
M E+ + FG G ++ L RD TG+ G+GFV Y+DP DA A ++G L +
Sbjct: 46 MTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAINTLNGLKLQTKT 105
Query: 92 LTVVFA 97
+ V +A
Sbjct: 106 IKVSYA 111
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 35/63 (55%)
Query: 41 FGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEEN 100
FG FG + ++ + RD+ T + +GFGFV + +AA A ++GY L R L V F
Sbjct: 280 FGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTSK 339
Query: 101 RKK 103
+ K
Sbjct: 340 QHK 342
>sp|Q4R7F0|RBMX_MACFA RNA-binding motif protein, X chromosome OS=Macaca fascicularis
GN=RBMX PE=2 SV=1
Length = 391
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 44/92 (47%), Gaps = 4/92 (4%)
Query: 14 MAVVEEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPA 73
M + +L + L FG++GR+ ++ L +D T + RGF FV + PA
Sbjct: 1 MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPA 60
Query: 74 DAADAKYHMDGYLLLGRELTVVFAEENRKKPS 105
DA DA M+G L G+ + V E KPS
Sbjct: 61 DAKDAARDMNGKSLDGKAIKV----EQATKPS 88
>sp|Q91584|ELAV3_XENLA ELAV-like protein 3 OS=Xenopus laevis GN=elavl3 PE=2 SV=1
Length = 348
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 40/77 (51%)
Query: 21 SRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 80
+ L+ + M E+ + FG G ++ L RD TG+ G+GFV Y+DP DA A
Sbjct: 34 TNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAIN 93
Query: 81 HMDGYLLLGRELTVVFA 97
++G L + + V +A
Sbjct: 94 TLNGLKLQTKTIKVSYA 110
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 35/63 (55%)
Query: 41 FGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEEN 100
FG FG + ++ + RD+ T + +GFGFV + +AA A ++GY L R L V F
Sbjct: 285 FGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTSK 344
Query: 101 RKK 103
+ K
Sbjct: 345 QHK 347
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 42/89 (47%), Gaps = 2/89 (2%)
Query: 31 AMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGR 90
M +++ F Q+GR+ + D TG RG GF+++ +A +A ++G LG
Sbjct: 130 TMNQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGA 189
Query: 91 E--LTVVFAEENRKKPSEMRARERFRSRS 117
+TV FA +K + +++ +
Sbjct: 190 SEPITVKFANNPSQKTGQALLTHLYQTTA 218
>sp|Q60990|RBY1B_MOUSE RNA-binding motif protein, Y chromosome, family 1 member B OS=Mus
musculus GN=Rbmy1b PE=2 SV=3
Length = 380
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 61/126 (48%), Gaps = 17/126 (13%)
Query: 14 MAVVEEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPA 73
MA ++ ++ + L+ FG+FG + + L RD T + RGF F+ + PA
Sbjct: 1 MAETDQPGKIFIGGLNIKTRQKTLQEIFGRFGPVARVILMRDRETKKSRGFAFLTFRRPA 60
Query: 74 DAADAKYHMDGYLLLGRELTVVFAEENRKKPSEMRARERFRSRSYDGRRSPPRYSRSPHY 133
DA +A M+G +L G+ + V A ++PS + + + R PP +SR+
Sbjct: 61 DAKNAVKEMNGVILDGKRIKVKQA----RRPSSLESGSKKR---------PPSFSRT--- 104
Query: 134 ARGYSR 139
RG SR
Sbjct: 105 -RGASR 109
>sp|Q6CEW9|MRD1_YARLI Multiple RNA-binding domain-containing protein 1 OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=MRD1 PE=3 SV=1
Length = 828
Score = 52.0 bits (123), Expect = 2e-06, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 47/88 (53%)
Query: 8 PALEVTMAVVEEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFV 67
P+ + T+ + + RL + ED R F Q+G L++++LP + TG+ +GF V
Sbjct: 288 PSEDPTIVSIRKTGRLFLRNLLYTAKEEDFRQLFSQYGELEEVHLPINTKTGQCKGFAHV 347
Query: 68 QYIDPADAADAKYHMDGYLLLGRELTVV 95
Q+ DP +A A DG + GR L ++
Sbjct: 348 QFEDPENAIAAYEAQDGKIFQGRLLHIL 375
Score = 47.4 bits (111), Expect = 7e-05, Method: Composition-based stats.
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 30 FAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLG 89
F +D++ FG FG LK + +P+ + E RGF F +Y+ +A A + G LLG
Sbjct: 712 FEATKKDVQKLFGAFGSLKTVRVPKKF-NSESRGFAFAEYVSAKEAEHAMSALQGTHLLG 770
Query: 90 RELTVVFAEENRKKPSE 106
R L + +A+ + E
Sbjct: 771 RRLVLQYAQADASNAEE 787
>sp|Q96E39|RMXL1_HUMAN RNA binding motif protein, X-linked-like-1 OS=Homo sapiens
GN=RBMXL1 PE=1 SV=1
Length = 390
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 44/92 (47%), Gaps = 4/92 (4%)
Query: 14 MAVVEEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPA 73
M + +L + L FG++GR+ ++ L +D T + RGF FV + PA
Sbjct: 1 MVEADRPGKLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPA 60
Query: 74 DAADAKYHMDGYLLLGRELTVVFAEENRKKPS 105
DA DA M+G L G+ + V E KPS
Sbjct: 61 DAKDAARDMNGKSLDGKAIKV----EQATKPS 88
>sp|P84586|RMXRL_RAT RNA-binding motif protein, X chromosome retrogene-like OS=Rattus
norvegicus GN=Rbmxrtl PE=3 SV=1
Length = 388
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 43/92 (46%), Gaps = 4/92 (4%)
Query: 14 MAVVEEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPA 73
M + +L + L FG++GR+ +I L +D T + RGF FV + PA
Sbjct: 1 MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPA 60
Query: 74 DAADAKYHMDGYLLLGRELTVVFAEENRKKPS 105
DA D M+G L G+ + V E KPS
Sbjct: 61 DAKDVARDMNGKSLDGKAIKV----EQATKPS 88
>sp|D4AE41|RMXL1_RAT RNA binding motif protein, X-linked-like-1 OS=Rattus norvegicus
GN=Rbmxl1 PE=3 SV=1
Length = 388
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 43/92 (46%), Gaps = 4/92 (4%)
Query: 14 MAVVEEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPA 73
M + +L + L FG++GR+ +I L +D T + RGF FV + PA
Sbjct: 1 MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPA 60
Query: 74 DAADAKYHMDGYLLLGRELTVVFAEENRKKPS 105
DA D M+G L G+ + V E KPS
Sbjct: 61 DAKDVARDMNGKSLDGKAIKV----EQATKPS 88
>sp|Q15415|RBY1F_HUMAN RNA-binding motif protein, Y chromosome, family 1 member F/J
OS=Homo sapiens GN=RBMY1F PE=2 SV=2
Length = 496
Score = 51.6 bits (122), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 56/117 (47%), Gaps = 15/117 (12%)
Query: 14 MAVVEEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPA 73
M + +L + L+ FG+ G + ++ L +D T + RGF F+ + +PA
Sbjct: 1 MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPA 59
Query: 74 DAADAKYHMDGYLLLGRELTVVFAEENRKKPSEMRARERFRSRSYDGRRSPPRYSRS 130
DA +A M+G L G+ + V E KKPS F+S GRR PP SR+
Sbjct: 60 DAKNAAKDMNGTSLHGKAIKV----EQAKKPS-------FQS---GGRRRPPASSRN 102
>sp|A6NEQ0|RBY1E_HUMAN RNA-binding motif protein, Y chromosome, family 1 member E OS=Homo
sapiens GN=RBMY1E PE=2 SV=1
Length = 496
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 56/117 (47%), Gaps = 15/117 (12%)
Query: 14 MAVVEEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPA 73
M + +L + L+ FG+ G + ++ L +D T + RGF F+ + +PA
Sbjct: 1 MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPA 59
Query: 74 DAADAKYHMDGYLLLGRELTVVFAEENRKKPSEMRARERFRSRSYDGRRSPPRYSRS 130
DA +A M+G L G+ + V E KKPS F+S GRR PP SR+
Sbjct: 60 DAKNAAKDMNGKSLHGKAIKV----EQAKKPS-------FQS---GGRRRPPASSRN 102
>sp|P0C7P1|RBY1D_HUMAN RNA-binding motif protein, Y chromosome, family 1 member D OS=Homo
sapiens GN=RBMY1D PE=2 SV=1
Length = 496
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 56/117 (47%), Gaps = 15/117 (12%)
Query: 14 MAVVEEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPA 73
M + +L + L+ FG+ G + ++ L +D T + RGF F+ + +PA
Sbjct: 1 MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPA 59
Query: 74 DAADAKYHMDGYLLLGRELTVVFAEENRKKPSEMRARERFRSRSYDGRRSPPRYSRS 130
DA +A M+G L G+ + V E KKPS F+S GRR PP SR+
Sbjct: 60 DAKNAAKDMNGKSLHGKAIKV----EQAKKPS-------FQS---GGRRRPPASSRN 102
>sp|P0DJD3|RBY1A_HUMAN RNA-binding motif protein, Y chromosome, family 1 member A1 OS=Homo
sapiens GN=RBMY1A1 PE=1 SV=1
Length = 496
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 56/117 (47%), Gaps = 15/117 (12%)
Query: 14 MAVVEEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPA 73
M + +L + L+ FG+ G + ++ L +D T + RGF F+ + +PA
Sbjct: 1 MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPA 59
Query: 74 DAADAKYHMDGYLLLGRELTVVFAEENRKKPSEMRARERFRSRSYDGRRSPPRYSRS 130
DA +A M+G L G+ + V E KKPS F+S GRR PP SR+
Sbjct: 60 DAKNAAKDMNGKSLHGKAIKV----EQAKKPS-------FQS---GGRRRPPASSRN 102
>sp|A6NDE4|RBY1B_HUMAN RNA-binding motif protein, Y chromosome, family 1 member B OS=Homo
sapiens GN=RBMY1B PE=2 SV=2
Length = 496
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 56/117 (47%), Gaps = 15/117 (12%)
Query: 14 MAVVEEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPA 73
M + +L + L+ FG+ G + ++ L +D T + RGF F+ + +PA
Sbjct: 1 MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPA 59
Query: 74 DAADAKYHMDGYLLLGRELTVVFAEENRKKPSEMRARERFRSRSYDGRRSPPRYSRS 130
DA +A M+G L G+ + V E KKPS F+S GRR PP SR+
Sbjct: 60 DAKNAAKDMNGKSLHGKAIKV----EQAKKPS-------FQS---GGRRRPPASSRN 102
>sp|Q57014|RBPA_SYNY3 Putative RNA-binding protein RbpA OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=rbpA PE=3 SV=3
Length = 101
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 39/73 (53%), Gaps = 5/73 (6%)
Query: 36 DLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVV 95
DL F ++G +K + LP D TG RGFGFV+ A+ A +DG +GR+L V
Sbjct: 16 DLTAVFAEYGSVKRVQLPTDRETGRMRGFGFVELEADAEETAAIEALDGAEWMGRDLKV- 74
Query: 96 FAEENRKKPSEMR 108
N+ KP E R
Sbjct: 75 ----NKAKPRENR 83
>sp|Q29RT0|RBMX_BOVIN RNA-binding motif protein, X chromosome OS=Bos taurus GN=RBMX
PE=2 SV=1
Length = 396
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 40/84 (47%)
Query: 14 MAVVEEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPA 73
M + +L + L FG++GR+ ++ L +D T + RGF F+ + PA
Sbjct: 1 MVEADRPGKLFIGGLNLETDEKSLEATFGKYGRISEVLLMKDRETNKSRGFAFITFESPA 60
Query: 74 DAADAKYHMDGYLLLGRELTVVFA 97
DA A M+G L G+ + V A
Sbjct: 61 DAKAAVRDMNGKSLDGKAIKVAQA 84
>sp|Q5AJS6|MRD1_CANAL Multiple RNA-binding domain-containing protein 1 OS=Candida
albicans (strain SC5314 / ATCC MYA-2876) GN=MRD1 PE=3
SV=1
Length = 841
Score = 51.2 bits (121), Expect = 4e-06, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 47/85 (55%)
Query: 17 VEEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAA 76
+EE RL ++ ED R F Q+G L+++++ D TG+ +GF +VQ++ DA
Sbjct: 306 IEETGRLFIRNISYEASEEDFRSLFSQYGALEEVHIAIDTRTGKSKGFLYVQFLKKEDAT 365
Query: 77 DAKYHMDGYLLLGRELTVVFAEENR 101
A +D + GR L ++ A++ +
Sbjct: 366 RAYRSLDKQIFQGRLLHILPADKKK 390
Score = 45.1 bits (105), Expect = 3e-04, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 30 FAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLG 89
F +DL FG FG+LK + +P+ + RGF FV++ +A A ++G LLG
Sbjct: 726 FEATRKDLLELFGAFGQLKSVRVPKKF-DQSARGFAFVEFNLMKEAETAMSQLEGVHLLG 784
Query: 90 RELTVVFAEEN 100
R L + +AE++
Sbjct: 785 RRLVMQYAEQD 795
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.137 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,563,799
Number of Sequences: 539616
Number of extensions: 3377659
Number of successful extensions: 15268
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 678
Number of HSP's successfully gapped in prelim test: 404
Number of HSP's that attempted gapping in prelim test: 8798
Number of HSP's gapped (non-prelim): 3883
length of query: 193
length of database: 191,569,459
effective HSP length: 111
effective length of query: 82
effective length of database: 131,672,083
effective search space: 10797110806
effective search space used: 10797110806
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)