Query 029462
Match_columns 193
No_of_seqs 276 out of 2416
Neff 9.0
Searched_HMMs 29240
Date Mon Mar 25 21:57:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029462.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029462hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pgw_S U1-70K; protein-RNA com 99.9 1.2E-24 4.3E-29 183.2 18.6 86 18-103 100-185 (437)
2 4fxv_A ELAV-like protein 1; RN 99.9 8.5E-25 2.9E-29 148.6 11.5 83 17-99 16-98 (99)
3 3s8s_A Histone-lysine N-methyl 99.9 2.3E-23 8E-28 144.0 11.7 82 19-100 5-86 (110)
4 2lxi_A RNA-binding protein 10; 99.9 6.5E-24 2.2E-28 142.0 6.8 83 21-103 2-86 (91)
5 3ex7_B RNA-binding protein 8A; 99.9 4.1E-23 1.4E-27 145.8 10.9 86 17-102 19-104 (126)
6 3bs9_A Nucleolysin TIA-1 isofo 99.9 7.6E-23 2.6E-27 135.2 11.1 83 18-100 4-86 (87)
7 3md1_A Nuclear and cytoplasmic 99.9 1.1E-22 3.9E-27 133.2 11.7 81 21-101 2-82 (83)
8 2lkz_A RNA-binding protein 5; 99.9 1.9E-23 6.6E-28 140.7 8.2 83 17-99 6-94 (95)
9 1h2v_Z 20 kDa nuclear CAP bind 99.9 8.3E-23 2.8E-27 149.5 12.2 86 17-102 36-121 (156)
10 1u6f_A Tcubp1, RNA-binding pro 99.9 1.1E-22 3.6E-27 146.1 11.7 87 17-103 39-125 (139)
11 2dnz_A Probable RNA-binding pr 99.9 2.1E-22 7.2E-27 135.2 12.4 85 18-102 3-87 (95)
12 2cpz_A CUG triplet repeat RNA- 99.9 1.2E-22 4E-27 141.3 11.5 86 17-102 22-107 (115)
13 2cq0_A Eukaryotic translation 99.9 1.2E-22 4.1E-27 138.5 11.2 86 17-102 12-97 (103)
14 2dnm_A SRP46 splicing factor; 99.9 7.8E-23 2.7E-27 139.5 10.2 86 17-102 10-95 (103)
15 2do4_A Squamous cell carcinoma 99.9 2.2E-22 7.6E-27 136.5 12.4 85 17-102 14-98 (100)
16 1x5u_A Splicing factor 3B subu 99.9 1.1E-22 3.8E-27 139.1 11.0 86 17-102 12-97 (105)
17 1whw_A Hypothetical protein ri 99.9 2.2E-22 7.6E-27 136.2 12.4 85 18-102 6-90 (99)
18 2dgs_A DAZ-associated protein 99.9 2.8E-22 9.7E-27 135.7 12.7 84 18-102 8-91 (99)
19 2cqb_A Peptidyl-prolyl CIS-tra 99.9 1.1E-22 3.8E-27 138.4 10.6 86 18-103 10-95 (102)
20 2dgo_A Cytotoxic granule-assoc 99.9 4.9E-22 1.7E-26 138.1 14.1 86 17-102 12-97 (115)
21 2fy1_A RNA-binding motif prote 99.9 1.9E-22 6.5E-27 140.7 11.9 83 18-101 5-87 (116)
22 2cqc_A Arginine/serine-rich sp 99.9 2.1E-22 7.2E-27 135.2 11.1 83 17-99 12-94 (95)
23 2d9p_A Polyadenylate-binding p 99.9 2.4E-22 8.3E-27 137.0 11.5 84 17-102 12-95 (103)
24 1p27_B RNA-binding protein 8A; 99.9 2.5E-22 8.4E-27 137.6 11.4 84 18-101 21-104 (106)
25 3mdf_A Peptidyl-prolyl CIS-tra 99.9 1.9E-22 6.6E-27 132.7 10.1 81 18-98 5-85 (85)
26 2x1f_A MRNA 3'-END-processing 99.9 3.2E-22 1.1E-26 134.8 11.4 82 20-101 2-83 (96)
27 1x5s_A Cold-inducible RNA-bind 99.9 1.7E-22 5.9E-27 137.5 10.1 86 17-102 9-94 (102)
28 2cph_A RNA binding motif prote 99.9 3.5E-22 1.2E-26 137.0 11.7 86 17-102 12-99 (107)
29 2dnh_A Bruno-like 5, RNA bindi 99.9 4.1E-22 1.4E-26 136.3 12.0 85 17-102 12-99 (105)
30 1x5t_A Splicing factor 3B subu 99.9 1.7E-22 5.7E-27 136.0 9.8 84 19-102 4-88 (96)
31 2e5h_A Zinc finger CCHC-type a 99.9 3.2E-22 1.1E-26 134.1 11.1 81 18-98 14-94 (94)
32 2la6_A RNA-binding protein FUS 99.9 2.5E-22 8.6E-27 136.0 10.5 82 17-98 10-99 (99)
33 2jrs_A RNA-binding protein 39; 99.9 2.9E-22 9.8E-27 138.1 10.6 85 16-100 22-106 (108)
34 1oo0_B CG8781-PA, drosophila Y 99.9 5E-22 1.7E-26 137.0 11.8 84 18-101 24-107 (110)
35 2cqd_A RNA-binding region cont 99.9 8.5E-22 2.9E-26 137.2 13.1 84 17-101 14-97 (116)
36 1x4h_A RNA-binding protein 28; 99.9 6.5E-22 2.2E-26 136.5 12.3 85 18-102 13-103 (111)
37 2cpe_A RNA-binding protein EWS 99.9 3.5E-22 1.2E-26 138.4 10.8 86 17-102 12-105 (113)
38 3p5t_L Cleavage and polyadenyl 99.9 4.1E-23 1.4E-27 137.7 5.8 81 22-102 3-85 (90)
39 1x4c_A Splicing factor, argini 99.9 1.2E-21 4.2E-26 134.8 13.0 75 19-100 14-93 (108)
40 2khc_A Testis-specific RNP-typ 99.9 4.8E-22 1.7E-26 138.8 10.7 82 17-98 37-118 (118)
41 4f25_A Polyadenylate-binding p 99.9 4.6E-22 1.6E-26 138.5 10.5 81 20-102 5-85 (115)
42 1wi8_A EIF-4B, eukaryotic tran 99.9 7.4E-22 2.5E-26 134.9 11.3 83 18-102 13-96 (104)
43 2cpf_A RNA binding motif prote 99.9 3.4E-22 1.2E-26 135.1 9.5 85 18-102 3-90 (98)
44 4a8x_A RNA-binding protein wit 99.9 4.8E-22 1.6E-26 131.5 9.8 83 19-101 3-86 (88)
45 3ulh_A THO complex subunit 4; 99.9 8.6E-22 2.9E-26 135.1 11.3 81 17-98 26-106 (107)
46 2dng_A Eukaryotic translation 99.9 1.1E-21 3.7E-26 133.8 11.7 82 18-101 13-94 (103)
47 2rs2_A Musashi-1, RNA-binding 99.9 6.9E-22 2.3E-26 136.4 10.7 93 9-102 14-106 (109)
48 2dgx_A KIAA0430 protein; RRM d 99.9 1E-21 3.6E-26 132.4 11.3 83 17-102 6-92 (96)
49 2dgp_A Bruno-like 4, RNA bindi 99.9 4.6E-22 1.6E-26 136.3 9.7 85 18-102 11-98 (106)
50 2cq3_A RNA-binding protein 9; 99.9 2.8E-21 9.6E-26 131.7 13.4 85 17-103 12-96 (103)
51 2kxn_B Transformer-2 protein h 99.9 3.7E-22 1.3E-26 141.8 9.2 85 17-101 43-127 (129)
52 3ns6_A Eukaryotic translation 99.9 1.4E-22 4.9E-27 137.7 6.7 81 20-100 6-93 (100)
53 2cq4_A RNA binding motif prote 99.9 2.9E-22 1E-26 139.1 8.3 83 18-101 23-105 (114)
54 2div_A TRNA selenocysteine ass 99.9 4.2E-22 1.4E-26 134.8 8.8 85 17-101 6-95 (99)
55 2cqi_A Nucleolysin TIAR; RNA r 99.9 2.7E-21 9.1E-26 131.8 12.5 84 17-102 12-95 (103)
56 2do0_A HnRNP M, heterogeneous 99.9 4.9E-21 1.7E-25 132.8 13.8 83 18-101 13-95 (114)
57 2dgu_A Heterogeneous nuclear r 99.9 2.6E-21 8.8E-26 132.0 12.1 79 17-103 8-86 (103)
58 1x4b_A Heterogeneous nuclear r 99.9 9.1E-22 3.1E-26 137.0 10.1 85 17-102 24-108 (116)
59 3beg_B Splicing factor, argini 99.9 6.9E-22 2.3E-26 137.6 9.3 72 19-97 15-91 (115)
60 1rk8_A CG8781-PA, CG8781-PA pr 99.9 1.4E-21 4.9E-26 144.3 11.4 85 18-102 70-154 (165)
61 2cqp_A RNA-binding protein 12; 99.9 5.1E-22 1.7E-26 134.2 8.3 84 17-100 12-95 (98)
62 3n9u_C Cleavage and polyadenyl 99.9 8.3E-22 2.8E-26 144.3 10.0 83 19-101 54-138 (156)
63 2dhg_A TRNA selenocysteine ass 99.9 9.5E-22 3.2E-26 134.2 9.5 84 18-102 7-92 (104)
64 2j76_E EIF-4B, EIF4B, eukaryot 99.9 3.5E-22 1.2E-26 135.7 7.3 84 15-100 14-98 (100)
65 2cqg_A TDP-43, TAR DNA-binding 99.9 4.3E-21 1.5E-25 130.8 12.4 85 16-102 11-95 (103)
66 2ywk_A Putative RNA-binding pr 99.9 1.7E-21 5.8E-26 130.8 10.2 80 18-98 14-93 (95)
67 3ucg_A Polyadenylate-binding p 99.9 1.7E-21 5.8E-26 129.2 10.0 80 20-100 6-85 (89)
68 3s7r_A Heterogeneous nuclear r 99.9 2.9E-21 1E-25 127.6 11.0 80 17-97 8-87 (87)
69 2cpi_A CCR4-NOT transcription 99.9 1.2E-21 4.2E-26 135.5 9.5 84 18-101 13-102 (111)
70 1x4a_A Splicing factor, argini 99.9 5.6E-21 1.9E-25 131.6 12.8 82 17-101 19-100 (109)
71 2dh8_A DAZ-associated protein 99.9 8.5E-22 2.9E-26 134.8 8.5 85 17-102 13-97 (105)
72 1sjq_A Polypyrimidine tract-bi 99.9 9.8E-22 3.3E-26 134.2 8.6 82 17-104 13-96 (105)
73 1p1t_A Cleavage stimulation fa 99.9 5E-22 1.7E-26 135.6 7.0 83 19-101 7-89 (104)
74 2jwn_A Embryonic polyadenylate 99.9 1.5E-21 5E-26 137.5 9.4 83 18-101 34-116 (124)
75 2dis_A Unnamed protein product 99.9 3.2E-21 1.1E-25 132.7 10.7 86 18-103 6-95 (109)
76 2dgv_A HnRNP M, heterogeneous 99.9 3E-21 1E-25 128.8 10.2 83 18-102 6-88 (92)
77 2kn4_A Immunoglobulin G-bindin 99.9 3.8E-21 1.3E-25 140.7 11.7 85 18-102 68-152 (158)
78 2ek1_A RNA-binding protein 12; 99.9 8.3E-22 2.8E-26 132.3 7.3 80 19-98 14-93 (95)
79 2cpd_A Apobec-1 stimulating pr 99.9 8.5E-21 2.9E-25 128.5 12.4 86 8-101 3-90 (99)
80 2kt5_A RNA and export factor-b 99.9 5.1E-21 1.7E-25 134.8 11.7 87 17-104 32-118 (124)
81 2cq1_A PTB-like protein L; RRM 99.9 8.9E-21 3.1E-25 129.0 12.5 82 17-104 12-95 (101)
82 1s79_A Lupus LA protein; RRM, 99.9 1.7E-21 5.7E-26 133.2 8.5 80 18-99 9-88 (103)
83 3r27_A HnRNP L, heterogeneous 99.9 4.3E-21 1.5E-25 129.8 10.3 78 17-100 18-97 (100)
84 1x4d_A Matrin 3; structural ge 99.9 2E-21 6.7E-26 132.4 8.7 79 17-101 12-93 (102)
85 2mss_A Protein (musashi1); RNA 99.9 8.4E-22 2.9E-26 126.7 6.5 75 22-97 1-75 (75)
86 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.9 5.5E-21 1.9E-25 137.0 11.4 81 17-97 60-140 (140)
87 2wbr_A GW182, gawky, LD47780P; 99.9 2.1E-21 7.3E-26 127.3 8.3 73 20-98 7-79 (89)
88 1x4e_A RNA binding motif, sing 99.9 6.3E-22 2.2E-26 130.3 5.8 80 18-97 3-82 (85)
89 2err_A Ataxin-2-binding protei 99.9 3.2E-21 1.1E-25 133.0 9.4 83 16-100 25-107 (109)
90 2m2b_A RNA-binding protein 10; 99.8 9E-22 3.1E-26 140.0 6.7 84 17-101 20-109 (131)
91 2dgw_A Probable RNA-binding pr 99.8 8.3E-21 2.8E-25 126.5 11.0 81 18-101 8-88 (91)
92 2xnq_A Nuclear polyadenylated 99.8 8.3E-21 2.8E-25 128.2 11.1 83 10-100 12-95 (97)
93 2lea_A Serine/arginine-rich sp 99.8 1.2E-21 4.1E-26 140.2 7.0 85 18-102 45-129 (135)
94 1wex_A Hypothetical protein (r 99.8 7.7E-21 2.6E-25 130.0 10.7 80 17-102 12-93 (104)
95 2dgt_A RNA-binding protein 30; 99.8 1.4E-20 4.8E-25 125.7 11.4 78 17-102 7-84 (92)
96 2ad9_A Polypyrimidine tract-bi 99.8 7.1E-21 2.4E-25 132.9 10.1 82 17-104 28-111 (119)
97 1why_A Hypothetical protein ri 99.8 1.3E-20 4.3E-25 127.1 11.1 80 16-101 13-94 (97)
98 1x5o_A RNA binding motif, sing 99.8 1.3E-20 4.4E-25 130.7 11.3 83 17-100 22-112 (114)
99 2ki2_A SS-DNA binding protein 99.8 6.9E-22 2.4E-26 131.5 4.5 81 21-102 2-82 (90)
100 2nlw_A Eukaryotic translation 99.8 5.3E-21 1.8E-25 131.0 9.1 79 20-100 15-100 (105)
101 2cpy_A RNA-binding protein 12; 99.8 3.6E-21 1.2E-25 133.7 8.1 83 17-101 12-95 (114)
102 2fc9_A NCL protein; structure 99.8 1.8E-20 6.2E-25 127.2 11.4 81 17-101 12-92 (101)
103 2dnq_A RNA-binding protein 4B; 99.8 1.5E-20 5E-25 125.1 10.5 77 18-102 6-82 (90)
104 3q2s_C Cleavage and polyadenyl 99.8 2.8E-21 9.6E-26 149.9 8.0 82 19-100 67-150 (229)
105 1uaw_A Mouse-musashi-1; RNP-ty 99.8 2.2E-21 7.4E-26 125.2 5.8 76 21-97 1-76 (77)
106 2jvo_A Nucleolar protein 3; nu 99.8 9.7E-21 3.3E-25 130.4 9.4 81 14-102 25-105 (108)
107 2a3j_A U1 small nuclear ribonu 99.8 9.3E-21 3.2E-25 134.1 9.5 82 17-101 26-111 (127)
108 1wg5_A Heterogeneous nuclear r 99.8 1.4E-20 4.8E-25 128.6 10.1 83 17-101 12-95 (104)
109 2kvi_A Nuclear polyadenylated 99.8 9.6E-21 3.3E-25 127.6 9.0 80 15-102 5-85 (96)
110 2fc8_A NCL protein; structure 99.8 2.6E-20 8.9E-25 126.6 11.0 82 17-101 12-93 (102)
111 2dnp_A RNA-binding protein 14; 99.8 2.2E-20 7.4E-25 124.3 10.3 77 17-101 6-82 (90)
112 1wez_A HnRNP H', FTP-3, hetero 99.8 1.1E-20 3.6E-25 128.9 9.0 81 18-101 13-93 (102)
113 2jvr_A Nucleolar protein 3; RN 99.8 8.4E-21 2.9E-25 131.2 8.5 78 19-100 27-105 (111)
114 1x4g_A Nucleolysin TIAR; struc 99.8 3.4E-20 1.1E-24 127.7 11.3 80 17-102 22-101 (109)
115 1wel_A RNA-binding protein 12; 99.8 1.7E-21 5.9E-26 137.3 4.8 83 17-100 22-104 (124)
116 2e5j_A Methenyltetrahydrofolat 99.8 1.3E-20 4.3E-25 127.2 8.7 80 17-101 16-95 (97)
117 2cpj_A Non-POU domain-containi 99.8 1.9E-20 6.4E-25 126.7 9.6 79 17-101 12-90 (99)
118 2db1_A Heterogeneous nuclear r 99.8 8.9E-21 3.1E-25 132.6 8.2 81 18-100 15-98 (118)
119 2cpx_A Hypothetical protein FL 99.8 2.6E-21 8.8E-26 134.4 5.4 82 17-102 22-107 (115)
120 1fj7_A Nucleolin RBD1, protein 99.8 1.5E-21 5.2E-26 132.6 3.4 83 18-102 15-97 (101)
121 2dnn_A RNA-binding protein 12; 99.8 2.2E-20 7.5E-25 128.8 9.2 79 19-100 15-93 (109)
122 2hvz_A Splicing factor, argini 99.8 1.7E-20 5.7E-25 127.4 8.3 76 21-101 1-76 (101)
123 2hgl_A HNRPF protein, heteroge 99.8 1.1E-20 3.6E-25 135.3 7.4 81 18-100 42-125 (136)
124 1nu4_A U1A RNA binding domain; 99.8 1.5E-20 5.2E-25 126.5 7.7 82 17-101 5-90 (97)
125 2f3j_A RNA and export factor b 99.8 2.2E-20 7.4E-25 139.5 9.2 83 18-101 86-168 (177)
126 1fjc_A Nucleolin RBD2, protein 99.8 3E-20 1E-24 124.9 8.9 80 17-101 13-92 (96)
127 2ytc_A PRE-mRNA-splicing facto 99.8 3.9E-20 1.3E-24 121.6 9.2 75 18-98 10-85 (85)
128 1x4f_A Matrin 3; structural ge 99.8 2.2E-20 7.7E-25 129.0 7.7 79 17-101 22-103 (112)
129 1whx_A Hypothetical protein ri 99.8 5.5E-20 1.9E-24 127.2 9.4 77 19-101 9-85 (111)
130 2krb_A Eukaryotic translation 99.8 1.4E-20 4.8E-25 122.8 6.0 72 21-94 2-80 (81)
131 1iqt_A AUF1, heterogeneous nuc 99.8 7.8E-21 2.7E-25 122.1 4.3 75 22-97 1-75 (75)
132 2la4_A Nuclear and cytoplasmic 99.8 3.9E-20 1.3E-24 125.6 8.0 75 19-99 26-100 (101)
133 2lcw_A RNA-binding protein FUS 99.7 9.7E-22 3.3E-26 136.9 0.0 84 18-101 5-96 (116)
134 1wf1_A RNA-binding protein RAL 99.8 1.5E-19 5E-24 124.7 10.6 76 18-101 25-101 (110)
135 2cqh_A IGF-II mRNA-binding pro 99.8 4.9E-20 1.7E-24 123.2 7.9 77 18-101 6-84 (93)
136 2lmi_A GRSF-1, G-rich sequence 99.8 1.3E-20 4.6E-25 129.4 5.1 81 18-100 9-92 (107)
137 3lqv_A PRE-mRNA branch site pr 99.8 1.3E-19 4.3E-24 125.8 10.1 81 18-101 6-86 (115)
138 4f02_A Polyadenylate-binding p 99.8 1.6E-19 5.6E-24 138.2 11.5 83 18-100 13-95 (213)
139 2e5g_A U6 snRNA-specific termi 99.8 1.4E-19 4.7E-24 121.3 9.4 78 18-101 6-83 (94)
140 2e44_A Insulin-like growth fac 99.8 1.1E-19 3.9E-24 122.1 9.0 79 18-100 13-92 (96)
141 1x5p_A Negative elongation fac 99.8 4.4E-19 1.5E-23 119.5 11.9 78 17-102 12-89 (97)
142 3egn_A RNA-binding protein 40; 99.8 1.9E-20 6.6E-25 135.0 5.4 86 17-102 42-132 (143)
143 2cq2_A Hypothetical protein LO 99.8 9.9E-20 3.4E-24 125.9 8.6 80 17-102 22-108 (114)
144 3zzy_A Polypyrimidine tract-bi 99.8 3.1E-19 1.1E-23 126.1 11.1 79 18-101 26-107 (130)
145 2hgn_A Heterogeneous nuclear r 99.8 1.4E-20 4.8E-25 135.1 4.3 81 18-101 44-124 (139)
146 2xs2_A Deleted in azoospermia- 99.8 6.7E-20 2.3E-24 124.6 7.1 80 19-101 8-87 (102)
147 2hgm_A HNRPF protein, heteroge 99.8 7.1E-20 2.4E-24 129.2 7.2 81 17-100 39-121 (126)
148 1sjr_A Polypyrimidine tract-bi 99.8 1.6E-19 5.3E-24 132.3 9.3 79 19-101 45-125 (164)
149 2i2y_A Fusion protein consists 99.8 1.8E-19 6.3E-24 130.8 9.5 80 17-101 70-149 (150)
150 3md3_A Nuclear and cytoplasmic 99.8 5.1E-19 1.7E-23 129.3 11.7 81 18-98 85-165 (166)
151 2e5i_A Heterogeneous nuclear r 99.8 6.1E-19 2.1E-23 124.0 11.1 75 21-101 26-103 (124)
152 1fxl_A Paraneoplastic encephal 99.8 6.5E-19 2.2E-23 128.8 11.6 82 20-101 2-83 (167)
153 2dha_A FLJ20171 protein; RRM d 99.8 6.5E-20 2.2E-24 129.0 5.7 82 17-100 20-105 (123)
154 2qfj_A FBP-interacting repress 99.8 4.7E-19 1.6E-23 135.1 10.6 86 17-102 122-207 (216)
155 1b7f_A Protein (SXL-lethal pro 99.8 5.5E-19 1.9E-23 129.6 10.3 82 20-101 3-84 (168)
156 2j8a_A Histone-lysine N-methyl 99.8 1.9E-19 6.5E-24 125.8 7.2 78 21-98 3-94 (136)
157 1wg1_A KIAA1579 protein, homol 99.8 4.3E-19 1.5E-23 117.5 8.6 74 20-100 5-78 (88)
158 2yh0_A Splicing factor U2AF 65 99.8 1.3E-18 4.6E-23 130.9 10.9 85 18-102 112-196 (198)
159 2g4b_A Splicing factor U2AF 65 99.8 1.1E-18 3.6E-23 128.6 9.6 78 20-97 94-171 (172)
160 2diu_A KIAA0430 protein; struc 99.8 1.4E-18 4.8E-23 115.1 8.7 73 20-102 8-86 (96)
161 1l3k_A Heterogeneous nuclear r 99.8 1.9E-18 6.3E-23 129.9 10.6 83 19-102 103-185 (196)
162 3d2w_A TAR DNA-binding protein 99.8 2.8E-18 9.6E-23 113.9 10.3 76 17-101 8-85 (89)
163 2qfj_A FBP-interacting repress 99.8 8.3E-19 2.9E-23 133.7 8.7 86 15-100 23-108 (216)
164 2cjk_A Nuclear polyadenylated 99.8 7.3E-19 2.5E-23 128.9 8.0 81 19-100 86-166 (167)
165 1l3k_A Heterogeneous nuclear r 99.8 2.2E-18 7.5E-23 129.5 10.7 83 18-101 11-93 (196)
166 4f02_A Polyadenylate-binding p 99.8 1.5E-18 5.3E-23 132.8 9.9 81 19-101 102-182 (213)
167 2bz2_A Negative elongation fac 99.8 1.6E-18 5.4E-23 121.7 9.1 77 17-101 36-112 (121)
168 3tyt_A Heterogeneous nuclear r 99.8 2.6E-18 9E-23 131.0 10.9 78 19-101 3-81 (205)
169 2dnl_A Cytoplasmic polyadenyla 99.8 2.1E-18 7.1E-23 119.7 9.1 78 18-98 6-86 (114)
170 2hzc_A Splicing factor U2AF 65 99.8 2.5E-18 8.6E-23 113.3 8.6 72 18-96 4-86 (87)
171 2pe8_A Splicing factor 45; RRM 99.8 7.9E-18 2.7E-22 115.1 10.9 82 18-99 6-93 (105)
172 1b7f_A Protein (SXL-lethal pro 99.8 6.1E-18 2.1E-22 123.9 10.9 79 19-97 88-168 (168)
173 3md3_A Nuclear and cytoplasmic 99.7 7.5E-18 2.6E-22 123.0 10.8 80 21-101 1-80 (166)
174 1fxl_A Paraneoplastic encephal 99.7 9.6E-18 3.3E-22 122.6 10.5 79 19-97 87-167 (167)
175 1wf0_A TDP-43, TAR DNA-binding 99.7 2.8E-18 9.5E-23 113.5 6.7 77 18-101 3-79 (88)
176 3nmr_A Cugbp ELAV-like family 99.7 1.7E-17 5.7E-22 122.3 10.8 79 19-98 94-175 (175)
177 3u1l_A PRE-mRNA-splicing facto 99.7 5.8E-18 2E-22 131.4 8.5 80 17-102 131-231 (240)
178 3nmr_A Cugbp ELAV-like family 99.7 1.6E-17 5.4E-22 122.4 10.4 83 19-101 2-89 (175)
179 1fje_B Nucleolin RBD12, protei 99.7 1.8E-17 6.2E-22 122.5 10.3 77 19-100 98-174 (175)
180 2cjk_A Nuclear polyadenylated 99.7 1.3E-17 4.5E-22 122.1 8.8 79 19-99 2-80 (167)
181 2voo_A Lupus LA protein; RNA-b 99.7 1.3E-17 4.6E-22 126.0 9.0 80 19-100 108-187 (193)
182 3pgw_A U1-A; protein-RNA compl 99.7 3.6E-17 1.2E-21 129.8 11.7 82 17-101 6-91 (282)
183 3pgw_A U1-A; protein-RNA compl 99.7 5.8E-17 2E-21 128.6 11.8 76 18-98 205-281 (282)
184 2ghp_A U4/U6 snRNA-associated 99.7 3.1E-17 1.1E-21 130.8 9.9 83 17-100 207-291 (292)
185 2adc_A Polypyrimidine tract-bi 99.7 4.5E-17 1.5E-21 125.9 9.6 79 18-101 32-111 (229)
186 3smz_A Protein raver-1, ribonu 99.7 1.3E-16 4.4E-21 126.8 11.5 84 18-102 182-266 (284)
187 3smz_A Protein raver-1, ribonu 99.7 1.7E-16 5.7E-21 126.1 12.0 84 18-101 93-176 (284)
188 2dit_A HIV TAT specific factor 99.7 2E-16 6.9E-21 109.3 9.8 80 18-101 13-103 (112)
189 2adc_A Polypyrimidine tract-bi 99.7 3.4E-16 1.2E-20 121.0 11.6 78 18-100 149-228 (229)
190 1qm9_A Polypyrimidine tract-bi 99.7 7.3E-17 2.5E-21 121.7 7.5 77 20-101 3-80 (198)
191 3v4m_A Splicing factor U2AF 65 99.7 2.3E-16 8E-21 107.8 9.3 82 19-100 4-97 (105)
192 3sde_A Paraspeckle component 1 99.7 2.2E-16 7.4E-21 124.4 10.2 77 17-99 19-95 (261)
193 1fje_B Nucleolin RBD12, protei 99.7 2.6E-17 8.9E-22 121.6 3.9 83 17-101 10-92 (175)
194 1qm9_A Polypyrimidine tract-bi 99.7 2E-16 6.7E-21 119.3 8.9 78 18-100 118-197 (198)
195 1jmt_A Splicing factor U2AF 35 99.7 4.9E-17 1.7E-21 111.0 4.7 72 25-97 20-103 (104)
196 3tyt_A Heterogeneous nuclear r 99.7 1.9E-16 6.4E-21 120.7 8.2 78 18-97 121-204 (205)
197 3ue2_A Poly(U)-binding-splicin 99.6 6E-16 2E-20 107.9 8.9 81 19-99 19-108 (118)
198 2ghp_A U4/U6 snRNA-associated 99.6 6.7E-16 2.3E-20 123.1 9.1 84 18-102 115-199 (292)
199 2g4b_A Splicing factor U2AF 65 99.6 9.1E-16 3.1E-20 112.8 9.1 75 19-100 3-88 (172)
200 3sde_A Paraspeckle component 1 99.6 1.3E-15 4.3E-20 120.0 10.3 83 18-101 94-180 (261)
201 2yh0_A Splicing factor U2AF 65 99.6 1.7E-15 5.8E-20 113.8 8.7 76 19-101 3-89 (198)
202 3tht_A Alkylated DNA repair pr 99.6 2.1E-15 7E-20 122.9 9.6 76 17-98 15-97 (345)
203 2d9o_A DNAJ (HSP40) homolog, s 99.6 5.7E-15 1.9E-19 99.9 10.0 76 20-102 10-92 (100)
204 3s6e_A RNA-binding protein 39; 99.5 4.4E-14 1.5E-18 97.8 9.8 77 19-99 6-92 (114)
205 1owx_A Lupus LA protein, SS-B, 99.4 6.6E-13 2.3E-17 92.3 9.7 76 17-98 15-94 (121)
206 2dnr_A Synaptojanin-1; RRM dom 99.4 2.5E-12 8.6E-17 84.3 8.4 58 35-101 30-87 (91)
207 3dxb_A Thioredoxin N-terminall 99.2 4E-11 1.4E-15 92.0 8.8 67 33-99 142-212 (222)
208 1ufw_A Synaptojanin 2; RNP dom 99.2 2.4E-11 8.4E-16 80.0 4.6 69 20-97 15-92 (95)
209 2l9w_A U4/U6 snRNA-associated- 98.9 6.3E-09 2.1E-13 70.0 8.2 72 20-97 21-97 (117)
210 1wey_A Calcipressin 1; structu 98.3 9.1E-07 3.1E-11 59.1 5.7 75 21-101 6-85 (104)
211 2dhx_A Poly (ADP-ribose) polym 98.2 1.3E-05 4.6E-10 53.3 8.6 69 21-98 9-82 (104)
212 1uw4_A UPF3X; nonsense mediate 98.1 2.8E-05 9.7E-10 50.9 9.3 79 21-99 2-87 (91)
213 1wwh_A Nucleoporin 35, nucleop 97.9 7.2E-05 2.4E-09 51.2 8.6 71 19-97 23-94 (119)
214 2l08_A Regulator of nonsense t 97.8 8.7E-05 3E-09 48.9 6.9 79 20-98 9-94 (97)
215 1whv_A Poly(A)-specific ribonu 97.8 9.1E-05 3.1E-09 48.7 6.8 55 21-83 16-70 (100)
216 3ctr_A Poly(A)-specific ribonu 97.6 0.0001 3.4E-09 48.7 5.0 53 23-83 8-60 (101)
217 3p3d_A Nucleoporin 53; structu 97.5 0.00012 4.2E-09 50.8 4.5 76 21-98 8-97 (132)
218 3pq1_A Poly(A) RNA polymerase; 97.1 0.00028 9.6E-09 59.4 3.1 54 21-80 54-107 (464)
219 2i2y_A Fusion protein consists 96.8 0.00041 1.4E-08 49.3 2.0 40 59-99 10-50 (150)
220 2kn4_A Immunoglobulin G-bindin 96.8 0.0012 4.1E-08 47.1 4.4 35 50-86 3-37 (158)
221 3d45_A Poly(A)-specific ribonu 93.4 0.21 7E-06 42.6 7.2 54 23-84 442-495 (507)
222 2g0c_A ATP-dependent RNA helic 93.4 0.21 7.2E-06 30.8 5.5 67 23-98 3-75 (76)
223 4eyt_A Telomerase associated p 89.4 2.9 0.0001 26.8 8.1 59 17-83 9-67 (129)
224 3pgw_S U1-70K; protein-RNA com 87.5 2.8 9.5E-05 34.8 8.6 7 73-79 117-123 (437)
225 4e8u_A Putative uncharacterize 73.9 8.3 0.00028 27.8 5.8 55 22-79 14-80 (172)
226 3fry_A Probable copper-exporti 72.7 12 0.0004 21.9 5.8 55 21-82 7-61 (73)
227 3ts2_A Protein LIN-28 homolog 70.3 0.98 3.4E-05 31.8 0.2 28 35-70 2-29 (148)
228 3lpe_A Putative transcription 70.3 11 0.00036 24.0 5.2 36 46-86 39-74 (92)
229 4a4j_A Pacszia, cation-transpo 51.9 24 0.00083 19.9 4.2 55 21-81 4-61 (69)
230 3dxs_X Copper-transporting ATP 48.9 36 0.0012 19.5 6.2 56 21-82 4-63 (74)
231 2lfv_A Protein DAMX; cell divi 54.5 3.6 0.00012 27.1 0.0 54 31-86 33-88 (106)
232 3j21_T 50S ribosomal protein L 48.3 28 0.00097 21.9 4.2 56 23-81 25-82 (86)
233 3uzu_A Ribosomal RNA small sub 47.1 6.5 0.00022 30.5 1.2 35 21-55 115-149 (279)
234 1xn9_A 30S ribosomal protein S 45.8 39 0.0013 21.9 4.6 48 30-78 28-80 (101)
235 3beg_B Splicing factor, argini 45.6 9.3 0.00032 24.9 1.7 11 71-81 29-39 (115)
236 3fut_A Dimethyladenosine trans 45.5 15 0.00051 28.3 3.1 32 21-53 111-142 (271)
237 2v94_A RPS24, 30S ribosomal pr 45.2 49 0.0017 21.7 5.1 46 31-77 38-88 (107)
238 3h7h_B Transcription elongatio 44.5 35 0.0012 22.3 4.3 34 46-84 40-73 (106)
239 1ywx_A 30S ribosomal protein S 42.7 48 0.0016 21.6 4.7 47 30-77 28-79 (102)
240 2xmw_A PACS-N, cation-transpor 42.4 43 0.0015 18.5 6.4 56 21-82 5-63 (71)
241 3swz_A Steroid 17-alpha-hydrox 42.0 40 0.0014 27.5 5.4 58 23-90 17-78 (494)
242 2g9o_A Copper-transporting ATP 41.3 53 0.0018 19.8 4.8 55 22-82 6-64 (90)
243 1mli_A Muconolactone isomerase 41.2 69 0.0024 20.5 7.2 58 26-87 9-76 (96)
244 4bby_A Alkyldihydroxyacetoneph 38.6 36 0.0012 29.7 4.7 55 28-83 351-409 (658)
245 1qyr_A KSGA, high level kasuga 37.0 27 0.00091 26.4 3.3 31 22-52 92-122 (252)
246 2e5p_A Protein PHF1, PHD finge 36.9 19 0.00064 21.5 1.8 19 45-71 28-46 (68)
247 2lea_A Serine/arginine-rich sp 36.6 7.4 0.00025 26.4 0.0 28 63-90 5-32 (135)
248 3tqs_A Ribosomal RNA small sub 36.5 9.7 0.00033 29.0 0.7 32 23-54 99-130 (255)
249 2e7g_A Putative ribosome-bindi 36.3 96 0.0033 20.8 6.0 36 44-83 43-79 (129)
250 2cu1_A Mitogen-activated prote 34.8 32 0.0011 22.4 2.8 66 25-99 21-87 (103)
251 3lo3_A Uncharacterized conserv 34.8 80 0.0028 19.8 4.8 20 61-80 52-71 (94)
252 2xzm_P RPS24E; ribosome, trans 34.5 81 0.0028 22.0 5.0 46 31-77 32-82 (149)
253 2ns6_A Mobilization protein A; 34.2 1E+02 0.0035 22.2 5.8 50 19-71 69-126 (185)
254 2npt_B Mitogen-activated prote 33.9 78 0.0027 20.3 4.4 54 24-85 32-86 (100)
255 2kt2_A Mercuric reductase; nme 31.5 67 0.0023 17.6 6.1 54 22-81 3-59 (69)
256 1yg0_A COP associated protein; 31.3 64 0.0022 17.3 6.0 54 23-82 5-61 (66)
257 3ftd_A Dimethyladenosine trans 31.2 25 0.00085 26.5 2.2 31 22-52 97-127 (249)
258 1y3j_A Copper-transporting ATP 30.8 76 0.0026 17.9 5.0 55 22-82 6-64 (77)
259 1vd2_A Protein kinase C, IOTA 30.6 1E+02 0.0035 19.4 4.9 53 23-82 17-74 (89)
260 3p8b_B Transcription antitermi 30.4 49 0.0017 22.8 3.5 35 47-86 33-67 (152)
261 1wvf_A 4-cresol dehydrogenase 29.9 39 0.0013 28.4 3.4 42 37-79 218-261 (520)
262 2cfx_A HTH-type transcriptiona 29.6 1.3E+02 0.0043 20.1 8.0 53 27-84 72-124 (144)
263 3bb5_A Stress responsive alpha 29.3 1.2E+02 0.0042 19.9 7.0 56 22-77 23-89 (121)
264 2g1d_A 30S ribosomal protein S 29.0 43 0.0015 21.6 2.7 45 31-76 30-79 (98)
265 2m0o_A PHD finger protein 1; t 29.0 30 0.001 21.3 1.8 19 45-71 45-63 (79)
266 2jrh_A Mitogen-activated prote 28.9 90 0.0031 19.7 4.1 63 27-98 19-82 (94)
267 2ew9_A Copper-transporting ATP 28.9 1.2E+02 0.0041 19.7 5.4 55 22-82 83-141 (149)
268 1i4w_A Mitochondrial replicati 28.6 37 0.0013 27.2 2.9 22 22-43 144-165 (353)
269 4a17_R RPL23A, 60S ribosomal p 28.5 40 0.0014 23.6 2.7 55 24-81 90-146 (150)
270 2od0_A Hypothetical protein VP 27.8 56 0.0019 20.9 3.2 22 32-53 4-25 (105)
271 1q8l_A Copper-transporting ATP 27.7 95 0.0033 18.1 7.4 56 21-82 11-70 (84)
272 3u5e_X 60S ribosomal protein L 27.6 40 0.0014 23.3 2.5 56 23-81 81-138 (142)
273 1aw0_A Menkes copper-transport 27.3 82 0.0028 17.2 4.8 55 22-82 6-64 (72)
274 3u5c_Y RP50, 40S ribosomal pro 26.3 1.6E+02 0.0054 20.1 7.3 46 31-77 34-84 (135)
275 2l3m_A Copper-ION-binding prot 26.1 87 0.003 17.1 6.1 55 22-82 8-66 (71)
276 1p6t_A Potential copper-transp 26.0 1.4E+02 0.0048 19.5 6.8 55 22-82 77-135 (151)
277 1cpz_A Protein (COPZ); copper 26.0 84 0.0029 16.9 7.0 54 22-81 3-60 (68)
278 3pm0_A Cypib1, cytochrome P450 25.9 94 0.0032 25.1 5.1 48 24-80 19-68 (507)
279 2eqj_A Metal-response element- 25.8 37 0.0013 20.2 1.8 10 62-71 41-50 (66)
280 1opz_A Potential copper-transp 25.8 91 0.0031 17.2 7.6 56 21-82 8-67 (76)
281 2c60_A Human mitogen-activated 25.8 87 0.003 20.4 3.7 53 25-85 44-97 (111)
282 2okq_A Hypothetical protein YB 25.4 1.6E+02 0.0055 20.2 5.2 45 37-81 50-109 (141)
283 1yjr_A Copper-transporting ATP 25.0 95 0.0032 17.1 7.5 56 21-82 6-65 (75)
284 2exu_A Transcription initiatio 24.8 53 0.0018 24.1 2.9 34 47-85 139-172 (200)
285 2qyc_A Ferredoxin-like protein 24.5 1.4E+02 0.0046 18.8 5.6 54 23-77 8-71 (103)
286 3bgu_A Ferredoxin-like protein 24.4 1.5E+02 0.0051 19.2 5.7 54 22-76 24-87 (116)
287 1o57_A PUR operon repressor; p 24.4 1.7E+02 0.0057 22.6 5.9 41 37-82 47-87 (291)
288 2e5q_A PHD finger protein 19; 24.1 13 0.00045 21.8 -0.4 10 62-71 35-44 (63)
289 2ofg_X Zinc-transporting ATPas 24.0 1.4E+02 0.0048 18.8 7.3 56 21-82 10-69 (111)
290 2uuu_A Alkyldihydroxyacetoneph 23.9 59 0.002 27.9 3.5 48 35-83 288-339 (584)
291 1osd_A MERP, hypothetical prot 23.8 98 0.0034 16.9 6.4 55 22-82 6-64 (72)
292 3cjk_B Copper-transporting ATP 23.4 1E+02 0.0036 17.1 6.4 55 22-82 5-63 (75)
293 2crl_A Copper chaperone for su 23.3 1.4E+02 0.0047 18.4 4.9 53 22-81 22-75 (98)
294 3ced_A Methionine import ATP-b 22.8 74 0.0025 20.1 3.0 55 30-84 30-87 (98)
295 1ytr_A Bacteriocin plantaricin 22.5 49 0.0017 15.2 1.5 12 34-45 14-25 (26)
296 3n9y_A Cholesterol SIDE-chain 22.1 1.3E+02 0.0044 24.2 5.1 38 34-80 35-72 (487)
297 1kvi_A Copper-transporting ATP 21.8 1.2E+02 0.004 17.1 6.6 55 22-82 11-69 (79)
298 1i1g_A Transcriptional regulat 21.7 1.7E+02 0.0059 19.1 5.0 47 33-83 76-123 (141)
299 2cyy_A Putative HTH-type trans 21.5 1.9E+02 0.0065 19.3 6.8 53 27-84 74-126 (151)
300 3bde_A MLL5499 protein; stress 21.4 1.8E+02 0.0061 19.0 6.1 56 22-77 23-86 (120)
301 2qrr_A Methionine import ATP-b 21.4 1.6E+02 0.0055 18.4 4.5 62 22-83 25-88 (101)
302 1vq8_S 50S ribosomal protein L 21.4 44 0.0015 20.9 1.6 52 23-77 24-77 (85)
303 3bn7_A Ferredoxin-like protein 21.3 1.8E+02 0.0061 19.0 6.3 55 22-76 23-90 (120)
304 2k5n_A Putative cold-shock pro 21.1 49 0.0017 20.0 1.8 10 62-71 14-23 (74)
305 2jsh_A Appetite-regulating hor 20.4 43 0.0015 16.0 1.1 22 27-48 2-23 (26)
306 3ulj_A LIN28B, DNA-binding pro 20.3 60 0.002 20.5 2.1 7 62-68 20-26 (90)
307 4aj5_1 SKA3, spindle and kinet 20.1 32 0.0011 22.3 0.8 12 34-45 90-101 (101)
No 1
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.93 E-value=1.2e-24 Score=183.18 Aligned_cols=86 Identities=26% Similarity=0.416 Sum_probs=80.4
Q ss_pred cCccEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEe
Q 029462 18 EEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 97 (193)
Q Consensus 18 ~~~~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l~v~~a 97 (193)
...++|||+|||+.||+++|+++|.+||.|+.|.|+.++.+|+++|||||+|.+.++|++||..|||+.|+|+.|.|+|+
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 34468999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCC
Q 029462 98 EENRKK 103 (193)
Q Consensus 98 ~~~~~~ 103 (193)
.+....
T Consensus 180 ~~~~~~ 185 (437)
T 3pgw_S 180 RGRTVK 185 (437)
T ss_pred CCCCCC
Confidence 876543
No 2
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.92 E-value=8.5e-25 Score=148.55 Aligned_cols=83 Identities=27% Similarity=0.466 Sum_probs=79.0
Q ss_pred ccCccEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEEE
Q 029462 17 VEEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 96 (193)
Q Consensus 17 ~~~~~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l~v~~ 96 (193)
..+.++|||+|||+++|+++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|++||..|||..|+|+.|.|+|
T Consensus 16 ~~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~ 95 (99)
T 4fxv_A 16 YFQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSY 95 (99)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 44567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eec
Q 029462 97 AEE 99 (193)
Q Consensus 97 a~~ 99 (193)
|+|
T Consensus 96 AkP 98 (99)
T 4fxv_A 96 ARP 98 (99)
T ss_dssp CCB
T ss_pred eeC
Confidence 965
No 3
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.90 E-value=2.3e-23 Score=144.04 Aligned_cols=82 Identities=10% Similarity=0.115 Sum_probs=77.9
Q ss_pred CccEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEee
Q 029462 19 EISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAE 98 (193)
Q Consensus 19 ~~~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l~v~~a~ 98 (193)
+..+|||+||++.+++++|+++|++||.|..|.|+.++.||+++|||||+|.+.++|++||..|||..|+|+.|.|++|.
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~ 84 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDI 84 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 34679999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred cC
Q 029462 99 EN 100 (193)
Q Consensus 99 ~~ 100 (193)
..
T Consensus 85 ~~ 86 (110)
T 3s8s_A 85 KG 86 (110)
T ss_dssp TT
T ss_pred CC
Confidence 43
No 4
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.90 E-value=6.5e-24 Score=141.99 Aligned_cols=83 Identities=22% Similarity=0.425 Sum_probs=76.8
Q ss_pred cEEEEeCCCCCCCHHHHHHhhccCC-ceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhC-CceecCcEEEEEEee
Q 029462 21 SRLVFWFATFAMIVEDLRGPFGQFG-RLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMD-GYLLLGRELTVVFAE 98 (193)
Q Consensus 21 ~rl~V~nl~~~~t~~~l~~~F~~~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~-g~~i~g~~l~v~~a~ 98 (193)
..|||+|||+++|+++|+++|++|| .|..|.|+.++.||.++|||||+|.+.++|++||+.|+ +..|+|+.|.|++|.
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~ 81 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSD 81 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcC
Confidence 5799999999999999999999999 89999999999999999999999999999999998875 567999999999998
Q ss_pred cCCCC
Q 029462 99 ENRKK 103 (193)
Q Consensus 99 ~~~~~ 103 (193)
++.+.
T Consensus 82 ~~~~~ 86 (91)
T 2lxi_A 82 PKPKI 86 (91)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 76644
No 5
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.89 E-value=4.1e-23 Score=145.82 Aligned_cols=86 Identities=24% Similarity=0.284 Sum_probs=80.5
Q ss_pred ccCccEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEEE
Q 029462 17 VEEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 96 (193)
Q Consensus 17 ~~~~~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l~v~~ 96 (193)
..+.++|||+|||+.+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|++||..|||..|+|+.|.|++
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 98 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 98 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 34456899999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred eecCCC
Q 029462 97 AEENRK 102 (193)
Q Consensus 97 a~~~~~ 102 (193)
|.++..
T Consensus 99 a~~~~~ 104 (126)
T 3ex7_B 99 CFVRGP 104 (126)
T ss_dssp SEESSS
T ss_pred ecCCCC
Confidence 987654
No 6
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.89 E-value=7.6e-23 Score=135.18 Aligned_cols=83 Identities=25% Similarity=0.440 Sum_probs=76.5
Q ss_pred cCccEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEe
Q 029462 18 EEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 97 (193)
Q Consensus 18 ~~~~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l~v~~a 97 (193)
.+..+|||+|||.++++++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|++||..|||..|+|+.|.|+++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 34567999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred ecC
Q 029462 98 EEN 100 (193)
Q Consensus 98 ~~~ 100 (193)
.++
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 764
No 7
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.89 E-value=1.1e-22 Score=133.17 Aligned_cols=81 Identities=30% Similarity=0.358 Sum_probs=77.5
Q ss_pred cEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEeecC
Q 029462 21 SRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEEN 100 (193)
Q Consensus 21 ~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l~v~~a~~~ 100 (193)
.+|||+|||.++++++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|++|+..|||..|+|+.|.|+++.++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 57999999999999999999999999999999999889999999999999999999999999999999999999999765
Q ss_pred C
Q 029462 101 R 101 (193)
Q Consensus 101 ~ 101 (193)
.
T Consensus 82 ~ 82 (83)
T 3md1_A 82 E 82 (83)
T ss_dssp C
T ss_pred C
Confidence 3
No 8
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.89 E-value=1.9e-23 Score=140.70 Aligned_cols=83 Identities=20% Similarity=0.348 Sum_probs=76.5
Q ss_pred ccCccEEEEeCCCCCCCHHHHHHhhccCCc--eEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCc----eecCc
Q 029462 17 VEEISRLVFWFATFAMIVEDLRGPFGQFGR--LKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGY----LLLGR 90 (193)
Q Consensus 17 ~~~~~rl~V~nl~~~~t~~~l~~~F~~~G~--i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~----~i~g~ 90 (193)
...+.+|||+|||+++|+++|+++|++||. |..|.|+.|+.||.++|||||+|.+.++|++||+.|||. .|+|+
T Consensus 6 ~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr 85 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGK 85 (95)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTE
T ss_pred CCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCE
Confidence 345678999999999999999999999995 678999999999999999999999999999999999997 48999
Q ss_pred EEEEEEeec
Q 029462 91 ELTVVFAEE 99 (193)
Q Consensus 91 ~l~v~~a~~ 99 (193)
.|.|+||+.
T Consensus 86 ~i~V~~Aks 94 (95)
T 2lkz_A 86 TIGVDFAKS 94 (95)
T ss_dssp EEEEEECCC
T ss_pred EEEEEEccC
Confidence 999999864
No 9
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.89 E-value=8.3e-23 Score=149.48 Aligned_cols=86 Identities=23% Similarity=0.291 Sum_probs=80.6
Q ss_pred ccCccEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEEE
Q 029462 17 VEEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 96 (193)
Q Consensus 17 ~~~~~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l~v~~ 96 (193)
..+.++|||+|||..+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||..||+..|+|+.|.|+|
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 115 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDW 115 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 44567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCC
Q 029462 97 AEENRK 102 (193)
Q Consensus 97 a~~~~~ 102 (193)
|.+...
T Consensus 116 a~~~~~ 121 (156)
T 1h2v_Z 116 DAGFKE 121 (156)
T ss_dssp ESCCCT
T ss_pred CCCCCC
Confidence 976543
No 10
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.89 E-value=1.1e-22 Score=146.09 Aligned_cols=87 Identities=22% Similarity=0.436 Sum_probs=81.0
Q ss_pred ccCccEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEEE
Q 029462 17 VEEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 96 (193)
Q Consensus 17 ~~~~~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l~v~~ 96 (193)
....++|||+|||.++++++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|++||..|||..|+|+.|.|++
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 118 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVAL 118 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 45567899999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred eecCCCC
Q 029462 97 AEENRKK 103 (193)
Q Consensus 97 a~~~~~~ 103 (193)
+.+....
T Consensus 119 a~~~~~~ 125 (139)
T 1u6f_A 119 AASGHQR 125 (139)
T ss_dssp SSCCCCC
T ss_pred CCCCCCC
Confidence 9876543
No 11
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.89 E-value=2.1e-22 Score=135.25 Aligned_cols=85 Identities=31% Similarity=0.496 Sum_probs=79.8
Q ss_pred cCccEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEe
Q 029462 18 EEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 97 (193)
Q Consensus 18 ~~~~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l~v~~a 97 (193)
...++|||+|||..+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||..|||..|+|+.|.|+++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 34578999999999999999999999999999999999989999999999999999999999999999999999999999
Q ss_pred ecCCC
Q 029462 98 EENRK 102 (193)
Q Consensus 98 ~~~~~ 102 (193)
.++..
T Consensus 83 ~~~~~ 87 (95)
T 2dnz_A 83 TERLD 87 (95)
T ss_dssp SCCCC
T ss_pred ccccC
Confidence 76553
No 12
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.89 E-value=1.2e-22 Score=141.33 Aligned_cols=86 Identities=24% Similarity=0.300 Sum_probs=80.4
Q ss_pred ccCccEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEEE
Q 029462 17 VEEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 96 (193)
Q Consensus 17 ~~~~~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l~v~~ 96 (193)
..+.++|||+|||.++++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|++||..||+..|+|+.|.|++
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 101 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQL 101 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 34557899999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred eecCCC
Q 029462 97 AEENRK 102 (193)
Q Consensus 97 a~~~~~ 102 (193)
+.++..
T Consensus 102 a~~~~~ 107 (115)
T 2cpz_A 102 KRSKND 107 (115)
T ss_dssp CCCSCC
T ss_pred cCCCCc
Confidence 976653
No 13
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.89 E-value=1.2e-22 Score=138.53 Aligned_cols=86 Identities=26% Similarity=0.376 Sum_probs=80.4
Q ss_pred ccCccEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEEE
Q 029462 17 VEEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 96 (193)
Q Consensus 17 ~~~~~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l~v~~ 96 (193)
..+.++|||+|||..+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||..|||..|+|+.|.|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEW 91 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 34557899999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred eecCCC
Q 029462 97 AEENRK 102 (193)
Q Consensus 97 a~~~~~ 102 (193)
+.++..
T Consensus 92 a~~~~~ 97 (103)
T 2cq0_A 92 AKPSTN 97 (103)
T ss_dssp SSCCCC
T ss_pred CCCCCC
Confidence 976653
No 14
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.89 E-value=7.8e-23 Score=139.50 Aligned_cols=86 Identities=41% Similarity=0.623 Sum_probs=80.4
Q ss_pred ccCccEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEEE
Q 029462 17 VEEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 96 (193)
Q Consensus 17 ~~~~~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l~v~~ 96 (193)
..+..+|||+|||..+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|++||..|||..|+|+.|.|++
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQV 89 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 34567899999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred eecCCC
Q 029462 97 AEENRK 102 (193)
Q Consensus 97 a~~~~~ 102 (193)
+.....
T Consensus 90 a~~~~~ 95 (103)
T 2dnm_A 90 ARYGRR 95 (103)
T ss_dssp CSSCCS
T ss_pred CCcCCC
Confidence 976543
No 15
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.89 E-value=2.2e-22 Score=136.50 Aligned_cols=85 Identities=24% Similarity=0.387 Sum_probs=79.2
Q ss_pred ccCccEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEEE
Q 029462 17 VEEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 96 (193)
Q Consensus 17 ~~~~~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l~v~~ 96 (193)
..+..+|||+|||..+++++|+++|.+||.|..|.|+.+. +|.++|||||+|.+.++|++||..|||..|+|+.|.|++
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 92 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAI 92 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4455779999999999999999999999999999999988 899999999999999999999999999999999999999
Q ss_pred eecCCC
Q 029462 97 AEENRK 102 (193)
Q Consensus 97 a~~~~~ 102 (193)
+.++..
T Consensus 93 a~~~~~ 98 (100)
T 2do4_A 93 SNSGPS 98 (100)
T ss_dssp CCCCSC
T ss_pred CCCCCC
Confidence 977653
No 16
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.89 E-value=1.1e-22 Score=139.12 Aligned_cols=86 Identities=26% Similarity=0.282 Sum_probs=80.6
Q ss_pred ccCccEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEEE
Q 029462 17 VEEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 96 (193)
Q Consensus 17 ~~~~~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l~v~~ 96 (193)
.....+|||+|||+.+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||..||+..|+|+.|.|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 91 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNK 91 (105)
T ss_dssp CCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 34567899999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred eecCCC
Q 029462 97 AEENRK 102 (193)
Q Consensus 97 a~~~~~ 102 (193)
+.+...
T Consensus 92 a~~~~~ 97 (105)
T 1x5u_A 92 ASAHNK 97 (105)
T ss_dssp TTTTSC
T ss_pred CCCCCc
Confidence 977654
No 17
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.89 E-value=2.2e-22 Score=136.18 Aligned_cols=85 Identities=29% Similarity=0.497 Sum_probs=80.1
Q ss_pred cCccEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEe
Q 029462 18 EEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 97 (193)
Q Consensus 18 ~~~~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l~v~~a 97 (193)
.+.++|||+|||+.+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|++||..|||..|+|+.|.|+++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 45578999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred ecCCC
Q 029462 98 EENRK 102 (193)
Q Consensus 98 ~~~~~ 102 (193)
.++..
T Consensus 86 ~~~~~ 90 (99)
T 1whw_A 86 TIKKE 90 (99)
T ss_dssp CCCST
T ss_pred CCCcc
Confidence 87654
No 18
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.89 E-value=2.8e-22 Score=135.74 Aligned_cols=84 Identities=23% Similarity=0.335 Sum_probs=78.9
Q ss_pred cCccEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEe
Q 029462 18 EEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 97 (193)
Q Consensus 18 ~~~~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l~v~~a 97 (193)
....+|||+|||..+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||. ||+..|+|+.|.|+++
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a 86 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRA 86 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEEC
Confidence 455789999999999999999999999999999999999899999999999999999999998 9999999999999999
Q ss_pred ecCCC
Q 029462 98 EENRK 102 (193)
Q Consensus 98 ~~~~~ 102 (193)
.++..
T Consensus 87 ~~~~~ 91 (99)
T 2dgs_A 87 EPRDS 91 (99)
T ss_dssp CCCCC
T ss_pred CCCcc
Confidence 87654
No 19
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.89 E-value=1.1e-22 Score=138.44 Aligned_cols=86 Identities=33% Similarity=0.377 Sum_probs=80.5
Q ss_pred cCccEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEe
Q 029462 18 EEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 97 (193)
Q Consensus 18 ~~~~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l~v~~a 97 (193)
.+.++|||+|||..+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||..||+..|+|+.|.|+++
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 89 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeC
Confidence 45577999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred ecCCCC
Q 029462 98 EENRKK 103 (193)
Q Consensus 98 ~~~~~~ 103 (193)
.+....
T Consensus 90 ~~~~~~ 95 (102)
T 2cqb_A 90 KPMRIK 95 (102)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 876543
No 20
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.89 E-value=4.9e-22 Score=138.13 Aligned_cols=86 Identities=27% Similarity=0.472 Sum_probs=80.4
Q ss_pred ccCccEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEEE
Q 029462 17 VEEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 96 (193)
Q Consensus 17 ~~~~~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l~v~~ 96 (193)
..+..+|||+|||..+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|++||..|||..|+|+.|.|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 91 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34557899999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred eecCCC
Q 029462 97 AEENRK 102 (193)
Q Consensus 97 a~~~~~ 102 (193)
+.++..
T Consensus 92 a~~~~~ 97 (115)
T 2dgo_A 92 ATRKPP 97 (115)
T ss_dssp SSCCCC
T ss_pred ccCCCC
Confidence 987654
No 21
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.89 E-value=1.9e-22 Score=140.72 Aligned_cols=83 Identities=28% Similarity=0.456 Sum_probs=78.2
Q ss_pred cCccEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEe
Q 029462 18 EEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 97 (193)
Q Consensus 18 ~~~~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l~v~~a 97 (193)
.+.++|||+|||.++++++|+++|++||.|..|.|+.+. +|.++|||||+|.+.++|++||..|||..|+|+.|.|+++
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 455789999999999999999999999999999999988 9999999999999999999999999999999999999999
Q ss_pred ecCC
Q 029462 98 EENR 101 (193)
Q Consensus 98 ~~~~ 101 (193)
++..
T Consensus 84 ~~~~ 87 (116)
T 2fy1_A 84 KKPS 87 (116)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 7654
No 22
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=2.1e-22 Score=135.19 Aligned_cols=83 Identities=27% Similarity=0.374 Sum_probs=78.1
Q ss_pred ccCccEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEEE
Q 029462 17 VEEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 96 (193)
Q Consensus 17 ~~~~~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l~v~~ 96 (193)
..+..+|||+|||..+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||..|||..|+|+.|.|++
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSG 91 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 34557799999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred eec
Q 029462 97 AEE 99 (193)
Q Consensus 97 a~~ 99 (193)
++.
T Consensus 92 a~~ 94 (95)
T 2cqc_A 92 PSS 94 (95)
T ss_dssp CSC
T ss_pred cCC
Confidence 853
No 23
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.88 E-value=2.4e-22 Score=137.03 Aligned_cols=84 Identities=25% Similarity=0.411 Sum_probs=78.3
Q ss_pred ccCccEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEEE
Q 029462 17 VEEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 96 (193)
Q Consensus 17 ~~~~~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l~v~~ 96 (193)
..+.++|||+|||+.+++++|+++|.+||.|..|.|+.+ ++.++|||||+|.+.++|++||..|||..|+|+.|.|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 89 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 446678999999999999999999999999999999987 889999999999999999999999999999999999999
Q ss_pred eecCCC
Q 029462 97 AEENRK 102 (193)
Q Consensus 97 a~~~~~ 102 (193)
+.++..
T Consensus 90 a~~~~~ 95 (103)
T 2d9p_A 90 AQRKEE 95 (103)
T ss_dssp CSSCCC
T ss_pred eccccc
Confidence 977653
No 24
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=2.5e-22 Score=137.62 Aligned_cols=84 Identities=25% Similarity=0.297 Sum_probs=79.4
Q ss_pred cCccEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEe
Q 029462 18 EEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 97 (193)
Q Consensus 18 ~~~~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l~v~~a 97 (193)
.+.++|||+|||..+++++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|++||..|||..|+|+.|.|+++
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCC
Q 029462 98 EENR 101 (193)
Q Consensus 98 ~~~~ 101 (193)
.++.
T Consensus 101 ~~~~ 104 (106)
T 1p27_B 101 FVRG 104 (106)
T ss_dssp EESS
T ss_pred cCCC
Confidence 8764
No 25
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.88 E-value=1.9e-22 Score=132.65 Aligned_cols=81 Identities=32% Similarity=0.387 Sum_probs=77.0
Q ss_pred cCccEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEe
Q 029462 18 EEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 97 (193)
Q Consensus 18 ~~~~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l~v~~a 97 (193)
.+..+|||+|||..+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|+.|+..|||..|+|+.|.|++|
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 45578999999999999999999999999999999999889999999999999999999999999999999999999997
Q ss_pred e
Q 029462 98 E 98 (193)
Q Consensus 98 ~ 98 (193)
+
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 26
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.88 E-value=3.2e-22 Score=134.76 Aligned_cols=82 Identities=18% Similarity=0.305 Sum_probs=78.5
Q ss_pred ccEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEeec
Q 029462 20 ISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEE 99 (193)
Q Consensus 20 ~~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l~v~~a~~ 99 (193)
.++|||+|||..+++++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|++||..|||..|+|+.|.|+++.+
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 46899999999999999999999999999999999998999999999999999999999999999999999999999977
Q ss_pred CC
Q 029462 100 NR 101 (193)
Q Consensus 100 ~~ 101 (193)
+.
T Consensus 82 ~~ 83 (96)
T 2x1f_A 82 SD 83 (96)
T ss_dssp SS
T ss_pred CC
Confidence 65
No 27
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=1.7e-22 Score=137.48 Aligned_cols=86 Identities=27% Similarity=0.433 Sum_probs=80.6
Q ss_pred ccCccEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEEE
Q 029462 17 VEEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 96 (193)
Q Consensus 17 ~~~~~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l~v~~ 96 (193)
..+..+|||+|||+++++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||..||+..|+|+.|.|++
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34567899999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred eecCCC
Q 029462 97 AEENRK 102 (193)
Q Consensus 97 a~~~~~ 102 (193)
+.+...
T Consensus 89 a~~~~~ 94 (102)
T 1x5s_A 89 AGKSSD 94 (102)
T ss_dssp EECCCC
T ss_pred CCCCCC
Confidence 987653
No 28
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.88 E-value=3.5e-22 Score=137.02 Aligned_cols=86 Identities=31% Similarity=0.526 Sum_probs=80.0
Q ss_pred ccCccEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCC-CCCCCcceEEEEEeCCHHHHHHHHHHh-CCceecCcEEEE
Q 029462 17 VEEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRD-YYTGEPRGFGFVQYIDPADAADAKYHM-DGYLLLGRELTV 94 (193)
Q Consensus 17 ~~~~~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~~g~~~g~afV~f~~~~~a~~Ai~~l-~g~~i~g~~l~v 94 (193)
.....+|||+|||..+++++|+++|.+||.|..|.|+.+ +.++.++|||||+|.+.++|++||..| |+..|.|+.|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v 91 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVL 91 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEE
Confidence 345578999999999999999999999999999999988 789999999999999999999999999 999999999999
Q ss_pred EEeecCCC
Q 029462 95 VFAEENRK 102 (193)
Q Consensus 95 ~~a~~~~~ 102 (193)
+++.+...
T Consensus 92 ~~a~~~~~ 99 (107)
T 2cph_A 92 EWADSEVT 99 (107)
T ss_dssp EECCCCCC
T ss_pred EeCCCCCC
Confidence 99977653
No 29
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.88 E-value=4.1e-22 Score=136.27 Aligned_cols=85 Identities=21% Similarity=0.305 Sum_probs=79.0
Q ss_pred ccCccEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecC---cEEE
Q 029462 17 VEEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLG---RELT 93 (193)
Q Consensus 17 ~~~~~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g---~~l~ 93 (193)
..+.++|||+|||..+++++|+++|.+||.|..|.|+.++ +|.++|||||+|.+.++|++||..|||..|.| +.|.
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~ 90 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLV 90 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEE
Confidence 3456789999999999999999999999999999999887 79999999999999999999999999999998 9999
Q ss_pred EEEeecCCC
Q 029462 94 VVFAEENRK 102 (193)
Q Consensus 94 v~~a~~~~~ 102 (193)
|++|.+...
T Consensus 91 V~~a~~~~~ 99 (105)
T 2dnh_A 91 VKFADTDKE 99 (105)
T ss_dssp EEESCSSCC
T ss_pred EEECccCcc
Confidence 999987654
No 30
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=1.7e-22 Score=136.02 Aligned_cols=84 Identities=23% Similarity=0.294 Sum_probs=79.2
Q ss_pred CccEEEEeCCCCCCCHHHHHHhhccCCceEEE-EEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEe
Q 029462 19 EISRLVFWFATFAMIVEDLRGPFGQFGRLKDI-YLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 97 (193)
Q Consensus 19 ~~~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v-~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l~v~~a 97 (193)
+.++|||+|||..+++++|+++|++||.|..| .|+.++.++.++|||||+|.+.++|++||..|||..|+|+.|.|+++
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 83 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 45789999999999999999999999999999 99999889999999999999999999999999999999999999999
Q ss_pred ecCCC
Q 029462 98 EENRK 102 (193)
Q Consensus 98 ~~~~~ 102 (193)
.++..
T Consensus 84 ~~~~~ 88 (96)
T 1x5t_A 84 FKKDS 88 (96)
T ss_dssp CCCCC
T ss_pred cccCC
Confidence 76653
No 31
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.88 E-value=3.2e-22 Score=134.09 Aligned_cols=81 Identities=20% Similarity=0.367 Sum_probs=77.1
Q ss_pred cCccEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEe
Q 029462 18 EEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 97 (193)
Q Consensus 18 ~~~~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l~v~~a 97 (193)
.+.++|||+|||..+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||..||+..|+|+.|.|++|
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIA 93 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEec
Confidence 45567999999999999999999999999999999999989999999999999999999999999999999999999998
Q ss_pred e
Q 029462 98 E 98 (193)
Q Consensus 98 ~ 98 (193)
+
T Consensus 94 k 94 (94)
T 2e5h_A 94 I 94 (94)
T ss_dssp C
T ss_pred C
Confidence 4
No 32
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.88 E-value=2.5e-22 Score=136.03 Aligned_cols=82 Identities=27% Similarity=0.303 Sum_probs=77.3
Q ss_pred ccCccEEEEeCCCCCCCHHHHHHhhccCCceEE--------EEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceec
Q 029462 17 VEEISRLVFWFATFAMIVEDLRGPFGQFGRLKD--------IYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLL 88 (193)
Q Consensus 17 ~~~~~rl~V~nl~~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~ 88 (193)
.....+|||+|||.++++++|+++|++||.|.. |.|+.++.+|.++|||||+|.+.++|++||..|||..|.
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~ 89 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 89 (99)
T ss_dssp CCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 344578999999999999999999999999999 999999889999999999999999999999999999999
Q ss_pred CcEEEEEEee
Q 029462 89 GRELTVVFAE 98 (193)
Q Consensus 89 g~~l~v~~a~ 98 (193)
|+.|.|++|+
T Consensus 90 g~~l~V~~A~ 99 (99)
T 2la6_A 90 GNPIKVSFAT 99 (99)
T ss_dssp SSBCEEEECC
T ss_pred CcEEEEEecC
Confidence 9999999974
No 33
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.88 E-value=2.9e-22 Score=138.08 Aligned_cols=85 Identities=32% Similarity=0.480 Sum_probs=79.7
Q ss_pred cccCccEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEE
Q 029462 16 VVEEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVV 95 (193)
Q Consensus 16 ~~~~~~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l~v~ 95 (193)
......+|||+|||..+++++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|+.||..|||..|+|+.|.|+
T Consensus 22 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~ 101 (108)
T 2jrs_A 22 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVG 101 (108)
T ss_dssp SCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34556789999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred EeecC
Q 029462 96 FAEEN 100 (193)
Q Consensus 96 ~a~~~ 100 (193)
++.++
T Consensus 102 ~a~~k 106 (108)
T 2jrs_A 102 HVTER 106 (108)
T ss_dssp CSCSS
T ss_pred EcccC
Confidence 98765
No 34
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.88 E-value=5e-22 Score=137.03 Aligned_cols=84 Identities=23% Similarity=0.299 Sum_probs=79.6
Q ss_pred cCccEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEe
Q 029462 18 EEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 97 (193)
Q Consensus 18 ~~~~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l~v~~a 97 (193)
.+.++|||+|||..+++++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|++||..|||..|+|+.|.|+++
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 103 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 103 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEc
Confidence 44577999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred ecCC
Q 029462 98 EENR 101 (193)
Q Consensus 98 ~~~~ 101 (193)
.++.
T Consensus 104 ~~~~ 107 (110)
T 1oo0_B 104 FVKG 107 (110)
T ss_dssp EESS
T ss_pred ccCC
Confidence 8765
No 35
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=8.5e-22 Score=137.16 Aligned_cols=84 Identities=25% Similarity=0.335 Sum_probs=78.5
Q ss_pred ccCccEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEEE
Q 029462 17 VEEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 96 (193)
Q Consensus 17 ~~~~~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l~v~~ 96 (193)
....++|||+|||+.+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|++||..||+ .|+|+.|.|++
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~ 92 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNL 92 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEE
Confidence 44567899999999999999999999999999999999999999999999999999999999999998 89999999999
Q ss_pred eecCC
Q 029462 97 AEENR 101 (193)
Q Consensus 97 a~~~~ 101 (193)
+....
T Consensus 93 a~~~~ 97 (116)
T 2cqd_A 93 AYLGA 97 (116)
T ss_dssp STTTC
T ss_pred cccCC
Confidence 97654
No 36
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.88 E-value=6.5e-22 Score=136.53 Aligned_cols=85 Identities=25% Similarity=0.271 Sum_probs=79.9
Q ss_pred cCccEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhC------CceecCcE
Q 029462 18 EEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMD------GYLLLGRE 91 (193)
Q Consensus 18 ~~~~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~------g~~i~g~~ 91 (193)
.+..+|||+|||+++++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|++||..|| +..|+|+.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~ 92 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQ 92 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEE
Confidence 455779999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred EEEEEeecCCC
Q 029462 92 LTVVFAEENRK 102 (193)
Q Consensus 92 l~v~~a~~~~~ 102 (193)
|.|.++.++..
T Consensus 93 l~v~~a~~~~~ 103 (111)
T 1x4h_A 93 LKVDLAVTRDE 103 (111)
T ss_dssp EEEECCCCCCC
T ss_pred EEEEECCCCcc
Confidence 99999976653
No 37
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=3.5e-22 Score=138.42 Aligned_cols=86 Identities=29% Similarity=0.311 Sum_probs=79.9
Q ss_pred ccCccEEEEeCCCCCCCHHHHHHhhccCCceE--------EEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceec
Q 029462 17 VEEISRLVFWFATFAMIVEDLRGPFGQFGRLK--------DIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLL 88 (193)
Q Consensus 17 ~~~~~rl~V~nl~~~~t~~~l~~~F~~~G~i~--------~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~ 88 (193)
..+.++|||+|||+.+++++|+++|.+||.|. .|.|+.++.+|.++|||||+|.+.++|++||..|||..|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 34567899999999999999999999999999 6999999889999999999999999999999999999999
Q ss_pred CcEEEEEEeecCCC
Q 029462 89 GRELTVVFAEENRK 102 (193)
Q Consensus 89 g~~l~v~~a~~~~~ 102 (193)
|+.|.|+++.++..
T Consensus 92 g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 92 GSKLKVSLARKKPP 105 (113)
T ss_dssp TEECEEECSSCCCC
T ss_pred CCEEEEEECCCCCC
Confidence 99999999976553
No 38
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.88 E-value=4.1e-23 Score=137.66 Aligned_cols=81 Identities=19% Similarity=0.174 Sum_probs=72.8
Q ss_pred EEEEeCCCCCCCHHHHHHhhccCC--ceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEeec
Q 029462 22 RLVFWFATFAMIVEDLRGPFGQFG--RLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEE 99 (193)
Q Consensus 22 rl~V~nl~~~~t~~~l~~~F~~~G--~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l~v~~a~~ 99 (193)
+|||+|||+++++++|+++|++|| .|..|.|+.++.+|.++|||||+|.+.++|++||+.|||..|+|+.|.|.++.+
T Consensus 3 ~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~~ 82 (90)
T 3p5t_L 3 ALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSNK 82 (90)
T ss_dssp -CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC--
T ss_pred EEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECCC
Confidence 599999999999999999999999 999999999999999999999999999999999999999999999999999987
Q ss_pred CCC
Q 029462 100 NRK 102 (193)
Q Consensus 100 ~~~ 102 (193)
...
T Consensus 83 ~~~ 85 (90)
T 3p5t_L 83 LEH 85 (90)
T ss_dssp ---
T ss_pred Ccc
Confidence 654
No 39
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.88 E-value=1.2e-21 Score=134.81 Aligned_cols=75 Identities=19% Similarity=0.162 Sum_probs=70.1
Q ss_pred CccEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecC-----cEEE
Q 029462 19 EISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLG-----RELT 93 (193)
Q Consensus 19 ~~~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g-----~~l~ 93 (193)
...+|||+|||+++++++|+++|.+||.|..|.|+.+ |||||+|.+.++|++||+.||+..|+| +.|.
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~ 86 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 86 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEE
Confidence 3478999999999999999999999999999999864 899999999999999999999999999 9999
Q ss_pred EEEeecC
Q 029462 94 VVFAEEN 100 (193)
Q Consensus 94 v~~a~~~ 100 (193)
|++|.++
T Consensus 87 V~~a~~~ 93 (108)
T 1x4c_A 87 VKVDGPR 93 (108)
T ss_dssp EEESSCC
T ss_pred EEeCCCC
Confidence 9999763
No 40
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.87 E-value=4.8e-22 Score=138.76 Aligned_cols=82 Identities=24% Similarity=0.310 Sum_probs=76.9
Q ss_pred ccCccEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEEE
Q 029462 17 VEEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 96 (193)
Q Consensus 17 ~~~~~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l~v~~ 96 (193)
..+.++|||+|||+++++++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|++||..|||..|+|+.|.|++
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 34456799999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ee
Q 029462 97 AE 98 (193)
Q Consensus 97 a~ 98 (193)
++
T Consensus 117 ak 118 (118)
T 2khc_A 117 KK 118 (118)
T ss_dssp C-
T ss_pred cC
Confidence 74
No 41
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.87 E-value=4.6e-22 Score=138.51 Aligned_cols=81 Identities=21% Similarity=0.290 Sum_probs=74.4
Q ss_pred ccEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEeec
Q 029462 20 ISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEE 99 (193)
Q Consensus 20 ~~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l~v~~a~~ 99 (193)
.++|||+|||+.+++++|+++|++||.|..|.|+.+. +.++|||||+|.+.++|++||..|||..|+|+.|.|+++.+
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 4679999999999999999999999999999999875 34689999999999999999999999999999999999876
Q ss_pred CCC
Q 029462 100 NRK 102 (193)
Q Consensus 100 ~~~ 102 (193)
+..
T Consensus 83 ~~~ 85 (115)
T 4f25_A 83 RKE 85 (115)
T ss_dssp CCC
T ss_pred ccc
Confidence 543
No 42
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=7.4e-22 Score=134.89 Aligned_cols=83 Identities=16% Similarity=0.270 Sum_probs=77.3
Q ss_pred cCccEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCC-CCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEEE
Q 029462 18 EEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYT-GEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 96 (193)
Q Consensus 18 ~~~~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~-g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l~v~~ 96 (193)
....+|||+|||+++++++|+++|.+|| |..|.|+.++.+ |.++|||||+|.+.++|++|| .||+..|+|+.|.|++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 90 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDV 90 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEE
Confidence 3447899999999999999999999999 999999999887 999999999999999999999 9999999999999999
Q ss_pred eecCCC
Q 029462 97 AEENRK 102 (193)
Q Consensus 97 a~~~~~ 102 (193)
+.++..
T Consensus 91 a~~~~~ 96 (104)
T 1wi8_A 91 ADQAQD 96 (104)
T ss_dssp CCCCCC
T ss_pred ccCCCC
Confidence 977653
No 43
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.87 E-value=3.4e-22 Score=135.05 Aligned_cols=85 Identities=28% Similarity=0.416 Sum_probs=78.1
Q ss_pred cCccEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCC---CCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEE
Q 029462 18 EEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYY---TGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 94 (193)
Q Consensus 18 ~~~~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~---~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l~v 94 (193)
.+.++|||+|||+++++++|+++|++||.|..|.|+.++. |+.++|||||+|.+.++|++||..|||..|+|+.|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 3457799999999999999999999999999999998776 6688999999999999999999999999999999999
Q ss_pred EEeecCCC
Q 029462 95 VFAEENRK 102 (193)
Q Consensus 95 ~~a~~~~~ 102 (193)
+++.+...
T Consensus 83 ~~a~~~~~ 90 (98)
T 2cpf_A 83 RISERATK 90 (98)
T ss_dssp ECSSCSSC
T ss_pred EEccCCCC
Confidence 99976653
No 44
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.87 E-value=4.8e-22 Score=131.51 Aligned_cols=83 Identities=22% Similarity=0.377 Sum_probs=76.8
Q ss_pred CccEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCC-cceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEe
Q 029462 19 EISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGE-PRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 97 (193)
Q Consensus 19 ~~~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~-~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l~v~~a 97 (193)
+.++|||+|||.++++++|+++|++||.|..|.|+.+..++. ++|||||+|.+.++|++|+..|||..|+|+.|.|+++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 457899999999999999999999999999999998876665 8999999999999999999999999999999999999
Q ss_pred ecCC
Q 029462 98 EENR 101 (193)
Q Consensus 98 ~~~~ 101 (193)
.+..
T Consensus 83 ~~~~ 86 (88)
T 4a8x_A 83 LAPW 86 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6543
No 45
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.87 E-value=8.6e-22 Score=135.12 Aligned_cols=81 Identities=27% Similarity=0.364 Sum_probs=76.9
Q ss_pred ccCccEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEEE
Q 029462 17 VEEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 96 (193)
Q Consensus 17 ~~~~~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l~v~~ 96 (193)
.....+|||+|||+.+++++|+++|.+||.|..|.|+.+. +|.++|||||+|.+.++|++||..|||..|+|+.|.|++
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 104 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQL 104 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 4556789999999999999999999999999999999988 999999999999999999999999999999999999999
Q ss_pred ee
Q 029462 97 AE 98 (193)
Q Consensus 97 a~ 98 (193)
|.
T Consensus 105 a~ 106 (107)
T 3ulh_A 105 VT 106 (107)
T ss_dssp EC
T ss_pred eC
Confidence 85
No 46
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.87 E-value=1.1e-21 Score=133.81 Aligned_cols=82 Identities=26% Similarity=0.336 Sum_probs=76.9
Q ss_pred cCccEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEe
Q 029462 18 EEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 97 (193)
Q Consensus 18 ~~~~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l~v~~a 97 (193)
....+|||+|||+++++++|+++|.+|| |..|.|+.++.++.++|||||+|.+.++|++|| .||+..|+|+.|.|+++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 90 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIA 90 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEEe
Confidence 3457899999999999999999999997 999999999999999999999999999999999 89999999999999999
Q ss_pred ecCC
Q 029462 98 EENR 101 (193)
Q Consensus 98 ~~~~ 101 (193)
.+..
T Consensus 91 ~~~~ 94 (103)
T 2dng_A 91 EGRK 94 (103)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 7654
No 47
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.87 E-value=6.9e-22 Score=136.38 Aligned_cols=93 Identities=25% Similarity=0.308 Sum_probs=76.2
Q ss_pred chhhccccccCccEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceec
Q 029462 9 ALEVTMAVVEEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLL 88 (193)
Q Consensus 9 ~~~~~~~~~~~~~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~ 88 (193)
+.....+...+.++|||+|||..+++++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|++||..+ +..|+
T Consensus 14 ~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~ 92 (109)
T 2rs2_A 14 LVPRGSHMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELD 92 (109)
T ss_dssp ------------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEET
T ss_pred CCccccccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCC
Confidence 33344444566678999999999999999999999999999999999999999999999999999999999876 59999
Q ss_pred CcEEEEEEeecCCC
Q 029462 89 GRELTVVFAEENRK 102 (193)
Q Consensus 89 g~~l~v~~a~~~~~ 102 (193)
|+.|.|+++.++..
T Consensus 93 g~~l~V~~a~~~~~ 106 (109)
T 2rs2_A 93 SKTIDPKVAFPRRA 106 (109)
T ss_dssp TEEEEEEECCCCCC
T ss_pred CEEEEEEEccCCCC
Confidence 99999999976653
No 48
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=1e-21 Score=132.37 Aligned_cols=83 Identities=16% Similarity=0.169 Sum_probs=76.1
Q ss_pred ccCccEEEEeCCCCCCCHHHHH----HhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEE
Q 029462 17 VEEISRLVFWFATFAMIVEDLR----GPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGREL 92 (193)
Q Consensus 17 ~~~~~rl~V~nl~~~~t~~~l~----~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l 92 (193)
..+.++|||+|||+.+++++|+ ++|++||.|..|.|+.++.+ +|||||+|.+.++|++||..|||..|+|+.|
T Consensus 6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l 82 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKI 82 (96)
T ss_dssp CSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 3455789999999999999999 99999999999999988755 8899999999999999999999999999999
Q ss_pred EEEEeecCCC
Q 029462 93 TVVFAEENRK 102 (193)
Q Consensus 93 ~v~~a~~~~~ 102 (193)
.|++|.+...
T Consensus 83 ~V~~a~~~~~ 92 (96)
T 2dgx_A 83 LVSLATGASG 92 (96)
T ss_dssp EEEECCCSSC
T ss_pred EEEEcCCCCC
Confidence 9999976653
No 49
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.87 E-value=4.6e-22 Score=136.26 Aligned_cols=85 Identities=20% Similarity=0.361 Sum_probs=79.2
Q ss_pred cCccEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee---cCcEEEE
Q 029462 18 EEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLL---LGRELTV 94 (193)
Q Consensus 18 ~~~~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i---~g~~l~v 94 (193)
.+..+|||+|||..+++++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|++||..||+..+ .|+.|.|
T Consensus 11 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v 90 (106)
T 2dgp_A 11 HDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQV 90 (106)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEE
Confidence 4457799999999999999999999999999999999999999999999999999999999999999987 8999999
Q ss_pred EEeecCCC
Q 029462 95 VFAEENRK 102 (193)
Q Consensus 95 ~~a~~~~~ 102 (193)
.++.+...
T Consensus 91 ~~a~~~~~ 98 (106)
T 2dgp_A 91 KPADSESR 98 (106)
T ss_dssp EECCCCSC
T ss_pred EECCcccc
Confidence 99976553
No 50
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=2.8e-21 Score=131.69 Aligned_cols=85 Identities=31% Similarity=0.440 Sum_probs=77.4
Q ss_pred ccCccEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEEE
Q 029462 17 VEEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 96 (193)
Q Consensus 17 ~~~~~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l~v~~ 96 (193)
..+.++|||+|||+.+++++|+++|.+||.|..|.|+.+.. .++|||||+|.+.++|++||..||+..|+|+.|.|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 89 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 89 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 44567899999999999999999999999999999998753 3799999999999999999999999999999999999
Q ss_pred eecCCCC
Q 029462 97 AEENRKK 103 (193)
Q Consensus 97 a~~~~~~ 103 (193)
+.++...
T Consensus 90 a~~~~~~ 96 (103)
T 2cq3_A 90 ATARVMT 96 (103)
T ss_dssp CCSSCCC
T ss_pred cccCCCC
Confidence 9876643
No 51
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.87 E-value=3.7e-22 Score=141.78 Aligned_cols=85 Identities=28% Similarity=0.418 Sum_probs=79.8
Q ss_pred ccCccEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEEE
Q 029462 17 VEEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 96 (193)
Q Consensus 17 ~~~~~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l~v~~ 96 (193)
..+.++|||+|||+.+++++|+++|++||.|..|.|+.++.+|..+|||||+|.+.++|++||..|||..|+|+.|.|++
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~ 122 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDF 122 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34556799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCC
Q 029462 97 AEENR 101 (193)
Q Consensus 97 a~~~~ 101 (193)
+.++.
T Consensus 123 a~~~~ 127 (129)
T 2kxn_B 123 SITKR 127 (129)
T ss_dssp CSSSS
T ss_pred ecCCC
Confidence 97654
No 52
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.87 E-value=1.4e-22 Score=137.67 Aligned_cols=81 Identities=22% Similarity=0.236 Sum_probs=77.3
Q ss_pred ccEEEEeCCCC------CCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecC-cEE
Q 029462 20 ISRLVFWFATF------AMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLG-REL 92 (193)
Q Consensus 20 ~~rl~V~nl~~------~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g-~~l 92 (193)
.++|||+|||. ++++++|+++|++||.|..|.|+.++.||+++|||||+|.+.++|++||..|||..|.| +.|
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l 85 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRL 85 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBC
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeEE
Confidence 36799999999 99999999999999999999999999999999999999999999999999999999999 999
Q ss_pred EEEEeecC
Q 029462 93 TVVFAEEN 100 (193)
Q Consensus 93 ~v~~a~~~ 100 (193)
.|.+|.+.
T Consensus 86 ~V~~a~~~ 93 (100)
T 3ns6_A 86 FLYTMKDV 93 (100)
T ss_dssp EEEESHHH
T ss_pred EEEECchh
Confidence 99999754
No 53
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=2.9e-22 Score=139.11 Aligned_cols=83 Identities=17% Similarity=0.308 Sum_probs=78.0
Q ss_pred cCccEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEe
Q 029462 18 EEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 97 (193)
Q Consensus 18 ~~~~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l~v~~a 97 (193)
....+|||+|||.++++++|+++|.+||.|..|.|+.++.+|.++|||||+|.+.++|++|| .|||..|+|+.|.|+++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEec
Confidence 34468999999999999999999999999999999999999999999999999999999999 99999999999999998
Q ss_pred ecCC
Q 029462 98 EENR 101 (193)
Q Consensus 98 ~~~~ 101 (193)
.+..
T Consensus 102 ~~~~ 105 (114)
T 2cq4_A 102 QAEK 105 (114)
T ss_dssp HHHH
T ss_pred CCCc
Confidence 7654
No 54
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.87 E-value=4.2e-22 Score=134.84 Aligned_cols=85 Identities=21% Similarity=0.257 Sum_probs=79.3
Q ss_pred ccCccEEEEeCCCCCCCHHHHHHhhccCCceE-EEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcE----
Q 029462 17 VEEISRLVFWFATFAMIVEDLRGPFGQFGRLK-DIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRE---- 91 (193)
Q Consensus 17 ~~~~~rl~V~nl~~~~t~~~l~~~F~~~G~i~-~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~---- 91 (193)
..+.++|||+|||+++++++|+++|++||.|. .|.|+.++.++.++|||||+|.+.++|++||..|||..|.|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 34567899999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred EEEEEeecCC
Q 029462 92 LTVVFAEENR 101 (193)
Q Consensus 92 l~v~~a~~~~ 101 (193)
|+|++|.+..
T Consensus 86 l~v~~a~~~~ 95 (99)
T 2div_A 86 FKLNYATYSG 95 (99)
T ss_dssp CCEEETTCCS
T ss_pred EEEeecCCCC
Confidence 9999987553
No 55
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=2.7e-21 Score=131.82 Aligned_cols=84 Identities=21% Similarity=0.221 Sum_probs=76.4
Q ss_pred ccCccEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEEE
Q 029462 17 VEEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 96 (193)
Q Consensus 17 ~~~~~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l~v~~ 96 (193)
.....+|||+|||+.+++++|+++|++||.|..|.|+.+..+ ++|||||+|.+.++|++||..||+..|.|+.|.|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNW 89 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEE
Confidence 345678999999999999999999999999999999988543 589999999999999999999999999999999999
Q ss_pred eecCCC
Q 029462 97 AEENRK 102 (193)
Q Consensus 97 a~~~~~ 102 (193)
+.+...
T Consensus 90 a~~~~~ 95 (103)
T 2cqi_A 90 ATTPSS 95 (103)
T ss_dssp CCCTTC
T ss_pred CCCCcc
Confidence 987553
No 56
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=4.9e-21 Score=132.79 Aligned_cols=83 Identities=22% Similarity=0.271 Sum_probs=77.2
Q ss_pred cCccEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEe
Q 029462 18 EEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 97 (193)
Q Consensus 18 ~~~~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l~v~~a 97 (193)
...++|||+|||..+++++|+++|.+||.|..|.|+.++ ++.++|||||+|.+.++|++||..||+..|+|+.|.|+++
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 91 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMD 91 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEc
Confidence 445789999999999999999999999999999999887 6899999999999999999999999999999999999998
Q ss_pred ecCC
Q 029462 98 EENR 101 (193)
Q Consensus 98 ~~~~ 101 (193)
....
T Consensus 92 ~~~~ 95 (114)
T 2do0_A 92 ERAL 95 (114)
T ss_dssp SCCC
T ss_pred ccCC
Confidence 6543
No 57
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.87 E-value=2.6e-21 Score=132.00 Aligned_cols=79 Identities=24% Similarity=0.398 Sum_probs=72.6
Q ss_pred ccCccEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEEE
Q 029462 17 VEEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 96 (193)
Q Consensus 17 ~~~~~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l~v~~ 96 (193)
+.+.++|||+|||+++++++|+++|.+||.|..|.|+ ++||||+|.+.++|++||..||+..|+|+.|.|++
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 79 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVF 79 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEE
Confidence 3456789999999999999999999999999999987 67999999999999999999999999999999999
Q ss_pred eecCCCC
Q 029462 97 AEENRKK 103 (193)
Q Consensus 97 a~~~~~~ 103 (193)
+.+....
T Consensus 80 a~~~~~~ 86 (103)
T 2dgu_A 80 AKPPDQK 86 (103)
T ss_dssp CCCCCCC
T ss_pred cCCCccc
Confidence 9876543
No 58
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=9.1e-22 Score=137.00 Aligned_cols=85 Identities=27% Similarity=0.343 Sum_probs=78.7
Q ss_pred ccCccEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEEE
Q 029462 17 VEEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 96 (193)
Q Consensus 17 ~~~~~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l~v~~ 96 (193)
....++|||+|||+++++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|++||.. |+..|+|+.|.|++
T Consensus 24 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~ 102 (116)
T 1x4b_A 24 KEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKR 102 (116)
T ss_dssp HHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEEC
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEE
Confidence 34457899999999999999999999999999999999999999999999999999999999987 99999999999999
Q ss_pred eecCCC
Q 029462 97 AEENRK 102 (193)
Q Consensus 97 a~~~~~ 102 (193)
+.++..
T Consensus 103 a~~~~~ 108 (116)
T 1x4b_A 103 AVAREE 108 (116)
T ss_dssp CSSCCC
T ss_pred CCCCcc
Confidence 976653
No 59
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.86 E-value=6.9e-22 Score=137.65 Aligned_cols=72 Identities=21% Similarity=0.208 Sum_probs=64.5
Q ss_pred CccEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcE-----EE
Q 029462 19 EISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRE-----LT 93 (193)
Q Consensus 19 ~~~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~-----l~ 93 (193)
...+|||+|||+++++++|+++|.+||+|..|.|+.+ |||||+|.+.++|++||+.|||.+|+|+. |+
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~ 87 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 87 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEE
Confidence 3467999999999999999999999999999999854 89999999999999999999999999998 55
Q ss_pred EEEe
Q 029462 94 VVFA 97 (193)
Q Consensus 94 v~~a 97 (193)
|+.+
T Consensus 88 v~~~ 91 (115)
T 3beg_B 88 VKVD 91 (115)
T ss_dssp EEEC
T ss_pred eccC
Confidence 5544
No 60
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.86 E-value=1.4e-21 Score=144.27 Aligned_cols=85 Identities=22% Similarity=0.293 Sum_probs=79.0
Q ss_pred cCccEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEe
Q 029462 18 EEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 97 (193)
Q Consensus 18 ~~~~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l~v~~a 97 (193)
.+.++|||+|||+.+++++|+++|.+||.|..|.|+.++.+|.++|||||+|.+.++|++||..|||..|.|+.|.|.|+
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 149 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 149 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 44567999999999999999999999999999999999899999999999999999999999999999999999999999
Q ss_pred ecCCC
Q 029462 98 EENRK 102 (193)
Q Consensus 98 ~~~~~ 102 (193)
.++..
T Consensus 150 ~~~~~ 154 (165)
T 1rk8_A 150 FVKGP 154 (165)
T ss_dssp EECC-
T ss_pred cCCCC
Confidence 87653
No 61
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.86 E-value=5.1e-22 Score=134.16 Aligned_cols=84 Identities=12% Similarity=0.153 Sum_probs=77.5
Q ss_pred ccCccEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEEE
Q 029462 17 VEEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 96 (193)
Q Consensus 17 ~~~~~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l~v~~ 96 (193)
....++|||+|||+.+++++|+++|.+||.|..+.++.++.+|.++|||||+|.+.++|++||..|||..|+|+.|.|++
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL 91 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 34457799999999999999999999999999888888888999999999999999999999999999999999999999
Q ss_pred eecC
Q 029462 97 AEEN 100 (193)
Q Consensus 97 a~~~ 100 (193)
+...
T Consensus 92 a~~~ 95 (98)
T 2cqp_A 92 GSGP 95 (98)
T ss_dssp SSCS
T ss_pred cCCC
Confidence 8643
No 62
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.86 E-value=8.3e-22 Score=144.33 Aligned_cols=83 Identities=12% Similarity=0.138 Sum_probs=77.6
Q ss_pred CccEEEEeCCCCCCCHHHHHHhhccCC--ceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEEE
Q 029462 19 EISRLVFWFATFAMIVEDLRGPFGQFG--RLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 96 (193)
Q Consensus 19 ~~~rl~V~nl~~~~t~~~l~~~F~~~G--~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l~v~~ 96 (193)
+..+|||+|||+++++++|+++|.+|| .|..|.|+.++.+|.++|||||+|.+.++|++||..|||..|+|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 346899999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred eecCC
Q 029462 97 AEENR 101 (193)
Q Consensus 97 a~~~~ 101 (193)
|.++.
T Consensus 134 a~~~~ 138 (156)
T 3n9u_C 134 ATRQN 138 (156)
T ss_dssp CCHHH
T ss_pred cCCCc
Confidence 97543
No 63
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=9.5e-22 Score=134.24 Aligned_cols=84 Identities=19% Similarity=0.155 Sum_probs=78.3
Q ss_pred cCccEEEEeCCCCCCCHHHHHHhhcc-CCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCce-ecCcEEEEE
Q 029462 18 EEISRLVFWFATFAMIVEDLRGPFGQ-FGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYL-LLGRELTVV 95 (193)
Q Consensus 18 ~~~~rl~V~nl~~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~-i~g~~l~v~ 95 (193)
....+|||+|||+++++++|+++|.+ ||.|..|.|+.+. +|.++|||||+|.+.++|++||..||+.. |+|+.|.|+
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~ 85 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 85 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEE
Confidence 44577999999999999999999999 9999999999998 99999999999999999999999999999 999999999
Q ss_pred EeecCCC
Q 029462 96 FAEENRK 102 (193)
Q Consensus 96 ~a~~~~~ 102 (193)
++.++..
T Consensus 86 ~a~~~~~ 92 (104)
T 2dhg_A 86 VAIPKAS 92 (104)
T ss_dssp BCCCCCS
T ss_pred EccCCCc
Confidence 9976543
No 64
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.86 E-value=3.5e-22 Score=135.69 Aligned_cols=84 Identities=17% Similarity=0.249 Sum_probs=74.6
Q ss_pred ccccCccEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCC-CCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEE
Q 029462 15 AVVEEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDY-YTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELT 93 (193)
Q Consensus 15 ~~~~~~~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~-~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l~ 93 (193)
......++|||+|||.++++++|+++|++|| |..|.|+.++ .+|.++|||||+|.+.++|++|| .|||..|+|+.|.
T Consensus 14 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~ 91 (100)
T 2j76_E 14 LPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIR 91 (100)
T ss_dssp ------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCC
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEE
Confidence 3345667899999999999999999999999 9999999988 68999999999999999999999 9999999999999
Q ss_pred EEEeecC
Q 029462 94 VVFAEEN 100 (193)
Q Consensus 94 v~~a~~~ 100 (193)
|+++.+.
T Consensus 92 V~~a~~~ 98 (100)
T 2j76_E 92 VDVADQA 98 (100)
T ss_dssp CEECCCS
T ss_pred EEeccCC
Confidence 9999764
No 65
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=4.3e-21 Score=130.79 Aligned_cols=85 Identities=21% Similarity=0.386 Sum_probs=77.9
Q ss_pred cccCccEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEE
Q 029462 16 VVEEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVV 95 (193)
Q Consensus 16 ~~~~~~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l~v~ 95 (193)
...+.++|||+|||+.+++++|+++|.+||.|..|.|+.++.+|.++|||||+|.+.++|++||. +++.|+|+.|.|+
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~ 88 (103)
T 2cqg_A 11 AVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCK 88 (103)
T ss_dssp CCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEE
T ss_pred ccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEE
Confidence 34556789999999999999999999999999999999998899999999999999999999997 5789999999999
Q ss_pred EeecCCC
Q 029462 96 FAEENRK 102 (193)
Q Consensus 96 ~a~~~~~ 102 (193)
++.++..
T Consensus 89 ~a~~~~~ 95 (103)
T 2cqg_A 89 LPNSKQS 95 (103)
T ss_dssp CCCTTCC
T ss_pred ecCCCCc
Confidence 9977653
No 66
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.86 E-value=1.7e-21 Score=130.76 Aligned_cols=80 Identities=26% Similarity=0.310 Sum_probs=75.3
Q ss_pred cCccEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEe
Q 029462 18 EEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 97 (193)
Q Consensus 18 ~~~~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l~v~~a 97 (193)
....+|||+|||+.+++++|+++|++||.|..|.|+.++. |.++|||||+|.+.++|++||..||+..|+|+.|.|+++
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGP 92 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEc
Confidence 3457899999999999999999999999999999998874 899999999999999999999999999999999999998
Q ss_pred e
Q 029462 98 E 98 (193)
Q Consensus 98 ~ 98 (193)
+
T Consensus 93 ~ 93 (95)
T 2ywk_A 93 S 93 (95)
T ss_dssp C
T ss_pred C
Confidence 5
No 67
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.86 E-value=1.7e-21 Score=129.18 Aligned_cols=80 Identities=20% Similarity=0.447 Sum_probs=76.3
Q ss_pred ccEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEeec
Q 029462 20 ISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEE 99 (193)
Q Consensus 20 ~~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l~v~~a~~ 99 (193)
..+|||+|||..+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++|+ .|||..|+|+.|.|+++.+
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 467999999999999999999999999999999999889999999999999999999999 9999999999999999875
Q ss_pred C
Q 029462 100 N 100 (193)
Q Consensus 100 ~ 100 (193)
.
T Consensus 85 ~ 85 (89)
T 3ucg_A 85 N 85 (89)
T ss_dssp T
T ss_pred C
Confidence 4
No 68
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.86 E-value=2.9e-21 Score=127.61 Aligned_cols=80 Identities=26% Similarity=0.358 Sum_probs=74.5
Q ss_pred ccCccEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEEE
Q 029462 17 VEEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 96 (193)
Q Consensus 17 ~~~~~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l~v~~ 96 (193)
..+..+|||+|||+.+++++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|++||. +++..|+|+.|.|++
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKK 86 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEe
Confidence 3455789999999999999999999999999999999999899999999999999999999995 588999999999988
Q ss_pred e
Q 029462 97 A 97 (193)
Q Consensus 97 a 97 (193)
|
T Consensus 87 A 87 (87)
T 3s7r_A 87 A 87 (87)
T ss_dssp C
T ss_pred C
Confidence 6
No 69
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.86 E-value=1.2e-21 Score=135.48 Aligned_cols=84 Identities=17% Similarity=0.264 Sum_probs=76.6
Q ss_pred cCccEEEEeCCCCCCCHHHHH---HhhccCCceEEEEEcCCCCCC---CcceEEEEEeCCHHHHHHHHHHhCCceecCcE
Q 029462 18 EEISRLVFWFATFAMIVEDLR---GPFGQFGRLKDIYLPRDYYTG---EPRGFGFVQYIDPADAADAKYHMDGYLLLGRE 91 (193)
Q Consensus 18 ~~~~rl~V~nl~~~~t~~~l~---~~F~~~G~i~~v~i~~~~~~g---~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~ 91 (193)
.+..+|||+|||+++++++|. ++|.+||.|..|.|+.+..++ .++|||||+|.+.++|++||..|||..|+|+.
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 345679999999999999999 999999999999999887654 45699999999999999999999999999999
Q ss_pred EEEEEeecCC
Q 029462 92 LTVVFAEENR 101 (193)
Q Consensus 92 l~v~~a~~~~ 101 (193)
|.|++|.++.
T Consensus 93 l~V~~a~~k~ 102 (111)
T 2cpi_A 93 LKASLGTTKY 102 (111)
T ss_dssp EEEESCCCCS
T ss_pred EEEEeccccc
Confidence 9999998765
No 70
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=5.6e-21 Score=131.56 Aligned_cols=82 Identities=30% Similarity=0.434 Sum_probs=74.7
Q ss_pred ccCccEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEEE
Q 029462 17 VEEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 96 (193)
Q Consensus 17 ~~~~~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l~v~~ 96 (193)
....++|||+|||.++++++|+++|.+||.|..|.|+.+ +.++|||||+|.+.++|++||..||+..|+|+.|.|++
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 95 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEF 95 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 345578999999999999999999999999999999653 46789999999999999999999999999999999999
Q ss_pred eecCC
Q 029462 97 AEENR 101 (193)
Q Consensus 97 a~~~~ 101 (193)
+.+..
T Consensus 96 a~~~~ 100 (109)
T 1x4a_A 96 PRSGR 100 (109)
T ss_dssp CCCCC
T ss_pred cccCC
Confidence 97654
No 71
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=8.5e-22 Score=134.77 Aligned_cols=85 Identities=27% Similarity=0.383 Sum_probs=79.5
Q ss_pred ccCccEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEEE
Q 029462 17 VEEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 96 (193)
Q Consensus 17 ~~~~~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l~v~~ 96 (193)
..+.++|||+|||+.+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|++||.. |+..|+|+.|.|++
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKP 91 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 45667899999999999999999999999999999999988999999999999999999999988 99999999999999
Q ss_pred eecCCC
Q 029462 97 AEENRK 102 (193)
Q Consensus 97 a~~~~~ 102 (193)
+.++..
T Consensus 92 a~~~~~ 97 (105)
T 2dh8_A 92 CTPRGM 97 (105)
T ss_dssp SCCSSC
T ss_pred ccCCCC
Confidence 976654
No 72
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=9.8e-22 Score=134.18 Aligned_cols=82 Identities=10% Similarity=0.123 Sum_probs=73.3
Q ss_pred ccCccEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCC--ceecCcEEEE
Q 029462 17 VEEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDG--YLLLGRELTV 94 (193)
Q Consensus 17 ~~~~~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g--~~i~g~~l~v 94 (193)
..+.++|||+|||+++++++|+++|++||.|..|.|+.+ +|||||+|++.++|++||..|++ ..|.|+.|.|
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 86 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 86 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 345678999999999999999999999999999999864 79999999999999999998864 7899999999
Q ss_pred EEeecCCCCC
Q 029462 95 VFAEENRKKP 104 (193)
Q Consensus 95 ~~a~~~~~~~ 104 (193)
++|+.+....
T Consensus 87 ~~A~~~~~~~ 96 (105)
T 1sjq_A 87 QFSNHKELKT 96 (105)
T ss_dssp CCCSSSSCCC
T ss_pred EEcCCCCCCc
Confidence 9998765443
No 73
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=5e-22 Score=135.58 Aligned_cols=83 Identities=27% Similarity=0.436 Sum_probs=78.4
Q ss_pred CccEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEee
Q 029462 19 EISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAE 98 (193)
Q Consensus 19 ~~~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l~v~~a~ 98 (193)
..++|||+|||..+++++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|++||..|||..|+|+.|.|+++.
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 34679999999999999999999999999999999998899999999999999999999999999999999999999997
Q ss_pred cCC
Q 029462 99 ENR 101 (193)
Q Consensus 99 ~~~ 101 (193)
+..
T Consensus 87 ~~~ 89 (104)
T 1p1t_A 87 SEK 89 (104)
T ss_dssp CTT
T ss_pred Ccc
Confidence 654
No 74
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.86 E-value=1.5e-21 Score=137.45 Aligned_cols=83 Identities=19% Similarity=0.410 Sum_probs=77.8
Q ss_pred cCccEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEe
Q 029462 18 EEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 97 (193)
Q Consensus 18 ~~~~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l~v~~a 97 (193)
.+..+|||+|||.++++++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|++|| .|||..|+|+.|.|+++
T Consensus 34 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 112 (124)
T 2jwn_A 34 IDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPK 112 (124)
T ss_dssp HHHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 34578999999999999999999999999999999999889999999999999999999999 89999999999999998
Q ss_pred ecCC
Q 029462 98 EENR 101 (193)
Q Consensus 98 ~~~~ 101 (193)
....
T Consensus 113 ~~~~ 116 (124)
T 2jwn_A 113 RTNM 116 (124)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 7543
No 75
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=3.2e-21 Score=132.69 Aligned_cols=86 Identities=21% Similarity=0.200 Sum_probs=78.6
Q ss_pred cCccEEEEeCCCCCCCHHHHHHhhccCCc-eEEEEEc-CCCCCCCcceEEEEEeCCHHHHHHHHHHhC--CceecCcEEE
Q 029462 18 EEISRLVFWFATFAMIVEDLRGPFGQFGR-LKDIYLP-RDYYTGEPRGFGFVQYIDPADAADAKYHMD--GYLLLGRELT 93 (193)
Q Consensus 18 ~~~~rl~V~nl~~~~t~~~l~~~F~~~G~-i~~v~i~-~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~--g~~i~g~~l~ 93 (193)
.+.++|||+|||+.+++++|+++|.+||. |..|.|+ .+..+|.++|||||+|.+.++|+.||..|| +..|+|+.|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 34578999999999999999999999998 9999998 788889999999999999999999999996 5899999999
Q ss_pred EEEeecCCCC
Q 029462 94 VVFAEENRKK 103 (193)
Q Consensus 94 v~~a~~~~~~ 103 (193)
|++|.+....
T Consensus 86 V~~a~~~~~~ 95 (109)
T 2dis_A 86 VDWAEPEIDV 95 (109)
T ss_dssp EEESCSSCST
T ss_pred EEEcCCCCCc
Confidence 9999876543
No 76
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.86 E-value=3e-21 Score=128.78 Aligned_cols=83 Identities=22% Similarity=0.347 Sum_probs=76.6
Q ss_pred cCccEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEe
Q 029462 18 EEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 97 (193)
Q Consensus 18 ~~~~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l~v~~a 97 (193)
.+..+|||+|||..+++++|+++|.+||.|..|.|+.+ +|.++|||||+|.+.++|++||..||+..|+|+.|.|+++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 83 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRID 83 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 44578999999999999999999999999999999874 7889999999999999999999999999999999999999
Q ss_pred ecCCC
Q 029462 98 EENRK 102 (193)
Q Consensus 98 ~~~~~ 102 (193)
.+...
T Consensus 84 ~~~~~ 88 (92)
T 2dgv_A 84 RNASG 88 (92)
T ss_dssp SCCSS
T ss_pred CCCCC
Confidence 76553
No 77
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.86 E-value=3.8e-21 Score=140.74 Aligned_cols=85 Identities=44% Similarity=0.670 Sum_probs=80.0
Q ss_pred cCccEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEe
Q 029462 18 EEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 97 (193)
Q Consensus 18 ~~~~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l~v~~a 97 (193)
....+|||+|||+.+++++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|++||..|||..|+|+.|.|.++
T Consensus 68 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 147 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 147 (158)
T ss_dssp CBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 44578999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred ecCCC
Q 029462 98 EENRK 102 (193)
Q Consensus 98 ~~~~~ 102 (193)
.+...
T Consensus 148 ~~~~~ 152 (158)
T 2kn4_A 148 RYGRP 152 (158)
T ss_dssp CCSSC
T ss_pred CCCCC
Confidence 87653
No 78
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.86 E-value=8.3e-22 Score=132.32 Aligned_cols=80 Identities=11% Similarity=0.129 Sum_probs=75.2
Q ss_pred CccEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEee
Q 029462 19 EISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAE 98 (193)
Q Consensus 19 ~~~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l~v~~a~ 98 (193)
...+|||+|||+++++++|+++|.+||.|..+.++.++.++.++|||||+|.+.++|++||..||+..|+|+.|.|+++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 34779999999999999999999999999988888888899999999999999999999999999999999999999875
No 79
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=8.5e-21 Score=128.45 Aligned_cols=86 Identities=17% Similarity=0.266 Sum_probs=75.9
Q ss_pred CchhhccccccCccEEEEeCCCCCCCHHHHHHhhccC--CceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCc
Q 029462 8 PALEVTMAVVEEISRLVFWFATFAMIVEDLRGPFGQF--GRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGY 85 (193)
Q Consensus 8 p~~~~~~~~~~~~~rl~V~nl~~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~ 85 (193)
|............++|||+|||+.+++++|+++|.+| |.|..|.++ +|||||+|.+.++|++||..|||.
T Consensus 3 p~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~ 74 (99)
T 2cpd_A 3 SGSSGDEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGK 74 (99)
T ss_dssp CCCCCCCSCSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSE
T ss_pred CcccccccccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCC
Confidence 3334444556677889999999999999999999999 999999876 789999999999999999999999
Q ss_pred eecCcEEEEEEeecCC
Q 029462 86 LLLGRELTVVFAEENR 101 (193)
Q Consensus 86 ~i~g~~l~v~~a~~~~ 101 (193)
.|+|+.|.|+++.++.
T Consensus 75 ~~~g~~l~v~~a~~~~ 90 (99)
T 2cpd_A 75 VLDGSPIEVTLAKPVD 90 (99)
T ss_dssp EETTEEEEEECCCCCC
T ss_pred EeCCcEEEEEECCCCC
Confidence 9999999999997654
No 80
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.86 E-value=5.1e-21 Score=134.77 Aligned_cols=87 Identities=25% Similarity=0.321 Sum_probs=80.3
Q ss_pred ccCccEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEEE
Q 029462 17 VEEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 96 (193)
Q Consensus 17 ~~~~~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l~v~~ 96 (193)
....++|||+|||..+++++|+++|++||.|..|.|+.+. +|.++|||||+|.+.++|++||..|||..|+|+.|.|++
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 110 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 110 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 4455789999999999999999999999999999999988 999999999999999999999999999999999999999
Q ss_pred eecCCCCC
Q 029462 97 AEENRKKP 104 (193)
Q Consensus 97 a~~~~~~~ 104 (193)
|......+
T Consensus 111 a~~~~~~~ 118 (124)
T 2kt5_A 111 VASQIDLE 118 (124)
T ss_dssp ECCTTCCC
T ss_pred eCCCCCCC
Confidence 98765443
No 81
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=8.9e-21 Score=128.98 Aligned_cols=82 Identities=10% Similarity=0.069 Sum_probs=72.9
Q ss_pred ccCccEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhC--CceecCcEEEE
Q 029462 17 VEEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMD--GYLLLGRELTV 94 (193)
Q Consensus 17 ~~~~~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~--g~~i~g~~l~v 94 (193)
..+.++|||+|||+.+++++|+++|++||.|..|.|+.+ +|||||+|++.++|++||..|+ +..|.|+.|.|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 85 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYI 85 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEE
Confidence 345678999999999999999999999999999998854 8999999999999999999874 67899999999
Q ss_pred EEeecCCCCC
Q 029462 95 VFAEENRKKP 104 (193)
Q Consensus 95 ~~a~~~~~~~ 104 (193)
+|+..+....
T Consensus 86 ~~a~~~~~~~ 95 (101)
T 2cq1_A 86 QYSNHKELKT 95 (101)
T ss_dssp EECSCSSCCC
T ss_pred EEcCcccCcC
Confidence 9998765443
No 82
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.7e-21 Score=133.16 Aligned_cols=80 Identities=14% Similarity=0.126 Sum_probs=74.8
Q ss_pred cCccEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEe
Q 029462 18 EEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 97 (193)
Q Consensus 18 ~~~~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l~v~~a 97 (193)
....+|||+|||+++|+++|+++|++||.|..|.|+.++. |.++|||||+|.+.++|++||. +|+..|+|+.|.|.++
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFK 86 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEc
Confidence 3446799999999999999999999999999999999886 9999999999999999999998 8999999999999997
Q ss_pred ec
Q 029462 98 EE 99 (193)
Q Consensus 98 ~~ 99 (193)
..
T Consensus 87 ~~ 88 (103)
T 1s79_A 87 DD 88 (103)
T ss_dssp HH
T ss_pred hH
Confidence 65
No 83
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.85 E-value=4.3e-21 Score=129.79 Aligned_cols=78 Identities=13% Similarity=0.139 Sum_probs=71.1
Q ss_pred ccCccEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCce--ecCcEEEE
Q 029462 17 VEEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYL--LLGRELTV 94 (193)
Q Consensus 17 ~~~~~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~--i~g~~l~v 94 (193)
..+...|||+|||+.+++++|.++|++||.|..|.|+.. +|||||+|++.++|++||..||+.. |.|+.|.|
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V 91 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFV 91 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEE
Confidence 456678999999999999999999999999999998843 7999999999999999999999875 78999999
Q ss_pred EEeecC
Q 029462 95 VFAEEN 100 (193)
Q Consensus 95 ~~a~~~ 100 (193)
++++.+
T Consensus 92 ~~S~~k 97 (100)
T 3r27_A 92 NYSTSQ 97 (100)
T ss_dssp EECSCS
T ss_pred Eecccc
Confidence 999764
No 84
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=2e-21 Score=132.35 Aligned_cols=79 Identities=15% Similarity=0.143 Sum_probs=71.1
Q ss_pred ccCccEEEEeCCCC-CCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCc--eecCcEEE
Q 029462 17 VEEISRLVFWFATF-AMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGY--LLLGRELT 93 (193)
Q Consensus 17 ~~~~~rl~V~nl~~-~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~--~i~g~~l~ 93 (193)
..+..+|||+|||+ ++++++|+++|++||.|..|.|+.+ +|||||+|++.++|++||..||+. .|.|+.|.
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~ 85 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVR 85 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEE
Confidence 34567899999999 9999999999999999999999865 689999999999999999999864 59999999
Q ss_pred EEEeecCC
Q 029462 94 VVFAEENR 101 (193)
Q Consensus 94 v~~a~~~~ 101 (193)
|++|....
T Consensus 86 V~~a~~~~ 93 (102)
T 1x4d_A 86 VHLSQKYK 93 (102)
T ss_dssp EEEECCCT
T ss_pred EEECCCCC
Confidence 99997543
No 85
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.85 E-value=8.4e-22 Score=126.67 Aligned_cols=75 Identities=24% Similarity=0.273 Sum_probs=72.0
Q ss_pred EEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEe
Q 029462 22 RLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 97 (193)
Q Consensus 22 rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l~v~~a 97 (193)
+|||+|||+++++++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|++|+. ||+..|+|+.|.|++|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 48999999999999999999999999999999998899999999999999999999997 9999999999999875
No 86
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.85 E-value=5.5e-21 Score=136.95 Aligned_cols=81 Identities=32% Similarity=0.383 Sum_probs=76.4
Q ss_pred ccCccEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEEE
Q 029462 17 VEEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 96 (193)
Q Consensus 17 ~~~~~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l~v~~ 96 (193)
..+..+|||+|||..+++++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|++||..|||..|+|+.|.|++
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 139 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 139 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 45567899999999999999999999999999999999988999999999999999999999999999999999999998
Q ss_pred e
Q 029462 97 A 97 (193)
Q Consensus 97 a 97 (193)
|
T Consensus 140 A 140 (140)
T 2ku7_A 140 A 140 (140)
T ss_dssp -
T ss_pred C
Confidence 6
No 87
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.85 E-value=2.1e-21 Score=127.34 Aligned_cols=73 Identities=18% Similarity=0.138 Sum_probs=68.9
Q ss_pred ccEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEee
Q 029462 20 ISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAE 98 (193)
Q Consensus 20 ~~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l~v~~a~ 98 (193)
..-|||+||++.+|+++|+++|.+||+|.+|.+.. ++|||||+|.+.++|++|++.||+..|.|++|.|++|.
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 35699999999999999999999999999999975 49999999999999999999999999999999999984
No 88
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=6.3e-22 Score=130.28 Aligned_cols=80 Identities=18% Similarity=0.134 Sum_probs=74.9
Q ss_pred cCccEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEe
Q 029462 18 EEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 97 (193)
Q Consensus 18 ~~~~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l~v~~a 97 (193)
.+.++|||+|||+++++++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|++||..|||..|.|+.|+|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 45578999999999999999999999999999999999889999999999999999999999999999999999877654
No 89
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=3.2e-21 Score=132.99 Aligned_cols=83 Identities=31% Similarity=0.466 Sum_probs=75.9
Q ss_pred cccCccEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEE
Q 029462 16 VVEEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVV 95 (193)
Q Consensus 16 ~~~~~~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l~v~ 95 (193)
.....++|||+|||.++++++|+++|++||.|..|.|+.+. +.++|||||+|.+.++|++|+..|||..|+|+.|.|+
T Consensus 25 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 102 (109)
T 2err_A 25 NKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 102 (109)
T ss_dssp CTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34566789999999999999999999999999999999875 3479999999999999999999999999999999999
Q ss_pred EeecC
Q 029462 96 FAEEN 100 (193)
Q Consensus 96 ~a~~~ 100 (193)
++.++
T Consensus 103 ~a~~~ 107 (109)
T 2err_A 103 NATAR 107 (109)
T ss_dssp ECCCS
T ss_pred ECCCC
Confidence 99764
No 90
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.85 E-value=9e-22 Score=140.04 Aligned_cols=84 Identities=18% Similarity=0.298 Sum_probs=78.1
Q ss_pred ccCccEEEEeCCCCCCCHHHHHHhhccCCceEE--EEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCc----eecCc
Q 029462 17 VEEISRLVFWFATFAMIVEDLRGPFGQFGRLKD--IYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGY----LLLGR 90 (193)
Q Consensus 17 ~~~~~rl~V~nl~~~~t~~~l~~~F~~~G~i~~--v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~----~i~g~ 90 (193)
....++|||+|||+++++++|+++|.+||.|.. |.|+.++.||.++|||||+|.+. +|++||..|||. .|+|+
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 345568999999999999999999999999976 99999999999999999999999 999999999999 99999
Q ss_pred EEEEEEeecCC
Q 029462 91 ELTVVFAEENR 101 (193)
Q Consensus 91 ~l~v~~a~~~~ 101 (193)
.|.|+++.+..
T Consensus 99 ~l~V~~a~~~~ 109 (131)
T 2m2b_A 99 TINVEFAKGSK 109 (131)
T ss_dssp CCCCEECCCSC
T ss_pred EEEEEECCCCC
Confidence 99999997654
No 91
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=8.3e-21 Score=126.51 Aligned_cols=81 Identities=15% Similarity=0.213 Sum_probs=75.6
Q ss_pred cCccEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEe
Q 029462 18 EEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 97 (193)
Q Consensus 18 ~~~~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l~v~~a 97 (193)
....+|||+|||+++++++|+++|.+| .|..|.|+.+ .+|.++|||||+|.+.++|++||. |||..|+|+.|.|.++
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a 84 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFRE 84 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEE
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEEC
Confidence 345779999999999999999999999 9999999988 789999999999999999999999 9999999999999999
Q ss_pred ecCC
Q 029462 98 EENR 101 (193)
Q Consensus 98 ~~~~ 101 (193)
.++.
T Consensus 85 ~~~~ 88 (91)
T 2dgw_A 85 KSGP 88 (91)
T ss_dssp SSCC
T ss_pred CcCC
Confidence 7664
No 92
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.85 E-value=8.3e-21 Score=128.24 Aligned_cols=83 Identities=23% Similarity=0.319 Sum_probs=71.4
Q ss_pred hhhccccccCccEEEEeCCCC-CCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceec
Q 029462 10 LEVTMAVVEEISRLVFWFATF-AMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLL 88 (193)
Q Consensus 10 ~~~~~~~~~~~~rl~V~nl~~-~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~ 88 (193)
+..........++|||+|||+ ++++++|+++|++||.|..|.|. +|||||+|.+.++|++||..|||..|+
T Consensus 12 ~~~~~~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (97)
T 2xnq_A 12 SGLVPRGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNF 83 (97)
T ss_dssp -------CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEET
T ss_pred cccccCCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 334444566778899999998 99999999999999999999985 799999999999999999999999999
Q ss_pred CcEEEEEEeecC
Q 029462 89 GRELTVVFAEEN 100 (193)
Q Consensus 89 g~~l~v~~a~~~ 100 (193)
|+.|.|++++.+
T Consensus 84 g~~l~V~~a~~~ 95 (97)
T 2xnq_A 84 GKKLILEVSSSN 95 (97)
T ss_dssp TEECEEEECCCC
T ss_pred CEEEEEEecCCC
Confidence 999999998754
No 93
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.85 E-value=1.2e-21 Score=140.17 Aligned_cols=85 Identities=44% Similarity=0.670 Sum_probs=79.6
Q ss_pred cCccEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEe
Q 029462 18 EEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 97 (193)
Q Consensus 18 ~~~~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l~v~~a 97 (193)
.+.++|||+|||+.+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||..|||..|+|+.|.|+++
T Consensus 45 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 124 (135)
T 2lea_A 45 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 124 (135)
T ss_dssp GGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 34567999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred ecCCC
Q 029462 98 EENRK 102 (193)
Q Consensus 98 ~~~~~ 102 (193)
++...
T Consensus 125 ~~~~~ 129 (135)
T 2lea_A 125 RYGRP 129 (135)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 86653
No 94
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=7.7e-21 Score=130.01 Aligned_cols=80 Identities=11% Similarity=0.132 Sum_probs=71.5
Q ss_pred ccCccEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCc--eecCcEEEE
Q 029462 17 VEEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGY--LLLGRELTV 94 (193)
Q Consensus 17 ~~~~~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~--~i~g~~l~v 94 (193)
..+..+|||+|||+.+++++|+++|++||.|..|.|+.+ +|||||+|++.++|++||..|++. .|.|+.|.|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V 85 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFF 85 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 445678999999999999999999999999999998853 799999999999999999988764 599999999
Q ss_pred EEeecCCC
Q 029462 95 VFAEENRK 102 (193)
Q Consensus 95 ~~a~~~~~ 102 (193)
+|+..+..
T Consensus 86 ~~a~~~~~ 93 (104)
T 1wex_A 86 NYSTSKRI 93 (104)
T ss_dssp EECSSSSC
T ss_pred EEccCccc
Confidence 99976654
No 95
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=1.4e-20 Score=125.70 Aligned_cols=78 Identities=17% Similarity=0.284 Sum_probs=71.8
Q ss_pred ccCccEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEEE
Q 029462 17 VEEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 96 (193)
Q Consensus 17 ~~~~~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l~v~~ 96 (193)
....++|||+|||+.+++++|+++|++||.|..|.|+ ++||||+|.+.++|++||..||+..|+|+.|.|++
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 78 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV--------KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQL 78 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC--------SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE--------CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 3455789999999999999999999999999999998 55999999999999999999999999999999999
Q ss_pred eecCCC
Q 029462 97 AEENRK 102 (193)
Q Consensus 97 a~~~~~ 102 (193)
+.++..
T Consensus 79 a~~~~~ 84 (92)
T 2dgt_A 79 STSRLR 84 (92)
T ss_dssp SSCCCS
T ss_pred ccCCCC
Confidence 977654
No 96
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=7.1e-21 Score=132.88 Aligned_cols=82 Identities=10% Similarity=0.123 Sum_probs=73.5
Q ss_pred ccCccEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCC--ceecCcEEEE
Q 029462 17 VEEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDG--YLLLGRELTV 94 (193)
Q Consensus 17 ~~~~~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g--~~i~g~~l~v 94 (193)
..+.++|||+|||+++++++|+++|++||.|..|.|+.+ +|||||+|++.++|++||..|++ ..|.|+.|.|
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V 101 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 101 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEE
Confidence 445678999999999999999999999999999999864 79999999999999999999884 6899999999
Q ss_pred EEeecCCCCC
Q 029462 95 VFAEENRKKP 104 (193)
Q Consensus 95 ~~a~~~~~~~ 104 (193)
++|+.+..+.
T Consensus 102 ~~a~~k~~~~ 111 (119)
T 2ad9_A 102 QFSNHKELKT 111 (119)
T ss_dssp EECSSSSCCC
T ss_pred EEccCCCCCc
Confidence 9998766543
No 97
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=1.3e-20 Score=127.11 Aligned_cols=80 Identities=25% Similarity=0.306 Sum_probs=73.2
Q ss_pred cccCccEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceec--CcEEE
Q 029462 16 VVEEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLL--GRELT 93 (193)
Q Consensus 16 ~~~~~~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~--g~~l~ 93 (193)
...+.++|||+|||.++++++|+++|++||.|..|.|+.+ +|||||+|.+.++|++||..||+..|. |+.|.
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~ 86 (97)
T 1why_A 13 KANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLR 86 (97)
T ss_dssp CCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEE
Confidence 3455678999999999999999999999999999999853 789999999999999999999999999 99999
Q ss_pred EEEeecCC
Q 029462 94 VVFAEENR 101 (193)
Q Consensus 94 v~~a~~~~ 101 (193)
|+++.++.
T Consensus 87 V~~a~~~~ 94 (97)
T 1why_A 87 VDFAKSGP 94 (97)
T ss_dssp EEECCCCC
T ss_pred EEECCCCC
Confidence 99997754
No 98
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.3e-20 Score=130.68 Aligned_cols=83 Identities=19% Similarity=0.322 Sum_probs=76.7
Q ss_pred ccCccEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee--------c
Q 029462 17 VEEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLL--------L 88 (193)
Q Consensus 17 ~~~~~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i--------~ 88 (193)
..+.++|||+|||..+++++|+++|.+||.|..|.|+.+. ++.++|||||+|.+.++|++||..|||..| .
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 3456789999999999999999999999999999999988 999999999999999999999999999999 5
Q ss_pred CcEEEEEEeecC
Q 029462 89 GRELTVVFAEEN 100 (193)
Q Consensus 89 g~~l~v~~a~~~ 100 (193)
++.|.|.||.+.
T Consensus 101 ~~~l~v~~a~p~ 112 (114)
T 1x5o_A 101 TEPLLCKFSGPS 112 (114)
T ss_dssp SSCBEEEECCCS
T ss_pred CCceeEEccCCC
Confidence 788999998743
No 99
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.84 E-value=6.9e-22 Score=131.48 Aligned_cols=81 Identities=25% Similarity=0.441 Sum_probs=74.1
Q ss_pred cEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEeecC
Q 029462 21 SRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEEN 100 (193)
Q Consensus 21 ~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l~v~~a~~~ 100 (193)
++|||+|||.++++++|+++|++||.|..|.|+.++.+|.++|||||+|.+.+ |++|+..|||..|+|+.|.|++|.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 57999999999999999999999999999999999989999999999999999 99999999999999999999999876
Q ss_pred CC
Q 029462 101 RK 102 (193)
Q Consensus 101 ~~ 102 (193)
..
T Consensus 81 ~~ 82 (90)
T 2ki2_A 81 KS 82 (90)
T ss_dssp --
T ss_pred CC
Confidence 53
No 100
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.84 E-value=5.3e-21 Score=130.99 Aligned_cols=79 Identities=25% Similarity=0.394 Sum_probs=73.3
Q ss_pred ccEEEEeCCCCCC------CHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCc-EE
Q 029462 20 ISRLVFWFATFAM------IVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGR-EL 92 (193)
Q Consensus 20 ~~rl~V~nl~~~~------t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~-~l 92 (193)
.++|||+|||+.+ ++++|+++|++||.|..|.|+ ..+|.++|||||+|.+.++|++||..|||..|+|+ .|
T Consensus 15 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l 92 (105)
T 2nlw_A 15 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 92 (105)
T ss_dssp CSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEE
T ss_pred CCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceE
Confidence 4679999999999 789999999999999999988 46889999999999999999999999999999998 99
Q ss_pred EEEEeecC
Q 029462 93 TVVFAEEN 100 (193)
Q Consensus 93 ~v~~a~~~ 100 (193)
.|+++...
T Consensus 93 ~V~~a~~~ 100 (105)
T 2nlw_A 93 RVNLFTDF 100 (105)
T ss_dssp EEECSCCC
T ss_pred EEEEcchH
Confidence 99998654
No 101
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=3.6e-21 Score=133.74 Aligned_cols=83 Identities=17% Similarity=0.080 Sum_probs=76.5
Q ss_pred ccCccEEEEeCCCCCCCHHHHHHhhccCCce-EEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEE
Q 029462 17 VEEISRLVFWFATFAMIVEDLRGPFGQFGRL-KDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVV 95 (193)
Q Consensus 17 ~~~~~rl~V~nl~~~~t~~~l~~~F~~~G~i-~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l~v~ 95 (193)
..+..+|||+|||+++++++|+++|.+||.| ..|.|+.++ +|.++|||||+|.+.++|++||.. |+..|+|+.|.|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~ 89 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVH 89 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEE
Confidence 3455779999999999999999999999999 889999998 999999999999999999999976 9999999999999
Q ss_pred EeecCC
Q 029462 96 FAEENR 101 (193)
Q Consensus 96 ~a~~~~ 101 (193)
++..+.
T Consensus 90 ~a~~~~ 95 (114)
T 2cpy_A 90 VVTLED 95 (114)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 997654
No 102
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=1.8e-20 Score=127.21 Aligned_cols=81 Identities=19% Similarity=0.329 Sum_probs=72.9
Q ss_pred ccCccEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEEE
Q 029462 17 VEEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 96 (193)
Q Consensus 17 ~~~~~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l~v~~ 96 (193)
..+.++|||+|||+++++++|+++|.+||.| .|+.+ .++..+|||||+|.+.++|++||..||+..|+|+.|.|++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 87 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 87 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEE
Confidence 3456789999999999999999999999987 45555 5889999999999999999999999999999999999999
Q ss_pred eecCC
Q 029462 97 AEENR 101 (193)
Q Consensus 97 a~~~~ 101 (193)
+.++.
T Consensus 88 a~~~~ 92 (101)
T 2fc9_A 88 QGPRG 92 (101)
T ss_dssp CSSCC
T ss_pred cCCCC
Confidence 97654
No 103
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=1.5e-20 Score=125.08 Aligned_cols=77 Identities=22% Similarity=0.369 Sum_probs=71.8
Q ss_pred cCccEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEe
Q 029462 18 EEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 97 (193)
Q Consensus 18 ~~~~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l~v~~a 97 (193)
...++|||+|||.++++++|+++|++||.|..|.|+ +|||||+|.+.++|++||..||+..|+|+.|.|+++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 77 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEAS 77 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECS
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEEC
Confidence 455789999999999999999999999999999987 689999999999999999999999999999999999
Q ss_pred ecCCC
Q 029462 98 EENRK 102 (193)
Q Consensus 98 ~~~~~ 102 (193)
.++..
T Consensus 78 ~~~~~ 82 (90)
T 2dnq_A 78 KNKSK 82 (90)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 77654
No 104
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.84 E-value=2.8e-21 Score=149.92 Aligned_cols=82 Identities=18% Similarity=0.167 Sum_probs=77.2
Q ss_pred CccEEEEeCCCCCCCHHHHHHhhccCC--ceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEEE
Q 029462 19 EISRLVFWFATFAMIVEDLRGPFGQFG--RLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 96 (193)
Q Consensus 19 ~~~rl~V~nl~~~~t~~~l~~~F~~~G--~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l~v~~ 96 (193)
..++|||+||++++++++|+++|.+|| .|+.|.|+.++.+|+++|||||+|.+.++|++||..||++.|+|+.|.|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 456799999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred eecC
Q 029462 97 AEEN 100 (193)
Q Consensus 97 a~~~ 100 (193)
|...
T Consensus 147 a~~~ 150 (229)
T 3q2s_C 147 VNKQ 150 (229)
T ss_dssp CCHH
T ss_pred CCCC
Confidence 8754
No 105
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=2.2e-21 Score=125.23 Aligned_cols=76 Identities=29% Similarity=0.427 Sum_probs=73.0
Q ss_pred cEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEe
Q 029462 21 SRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 97 (193)
Q Consensus 21 ~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l~v~~a 97 (193)
++|||+|||.++++++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|++|+..|+ ..|+|+.|.|++|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 369999999999999999999999999999999998899999999999999999999999999 9999999999987
No 106
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.84 E-value=9.7e-21 Score=130.40 Aligned_cols=81 Identities=25% Similarity=0.372 Sum_probs=72.4
Q ss_pred cccccCccEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEE
Q 029462 14 MAVVEEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELT 93 (193)
Q Consensus 14 ~~~~~~~~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l~ 93 (193)
.......++|||+|||.++++++|+++|++||.|..|.|+ +|||||+|.+.++|++|+..|||..|+|+.|.
T Consensus 25 ~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 96 (108)
T 2jvo_A 25 QEGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLE 96 (108)
T ss_dssp ---CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred cCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 3445566789999999999999999999999999999987 78999999999999999999999999999999
Q ss_pred EEEeecCCC
Q 029462 94 VVFAEENRK 102 (193)
Q Consensus 94 v~~a~~~~~ 102 (193)
|+++.+...
T Consensus 97 V~~a~~~~~ 105 (108)
T 2jvo_A 97 VVYSKLPAK 105 (108)
T ss_dssp EESCSCCC-
T ss_pred EEEecCCCC
Confidence 999976553
No 107
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.84 E-value=9.3e-21 Score=134.08 Aligned_cols=82 Identities=17% Similarity=0.250 Sum_probs=73.6
Q ss_pred ccCccEEEEeCCCCCCCHHHHH----HhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEE
Q 029462 17 VEEISRLVFWFATFAMIVEDLR----GPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGREL 92 (193)
Q Consensus 17 ~~~~~rl~V~nl~~~~t~~~l~----~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l 92 (193)
..+.++|||+|||+.+++++|+ ++|++||.|..|.+.. ++.++|||||+|.+.++|+.||..|||..|.|+.|
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l 102 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPL 102 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEE
Confidence 4556789999999999998876 6999999999988753 67889999999999999999999999999999999
Q ss_pred EEEEeecCC
Q 029462 93 TVVFAEENR 101 (193)
Q Consensus 93 ~v~~a~~~~ 101 (193)
.|+||..+.
T Consensus 103 ~V~~a~~~~ 111 (127)
T 2a3j_A 103 VITFSETPQ 111 (127)
T ss_dssp EEEECCCCC
T ss_pred EEEEccCcc
Confidence 999997654
No 108
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.4e-20 Score=128.63 Aligned_cols=83 Identities=17% Similarity=0.187 Sum_probs=75.4
Q ss_pred ccCccEEEEeCCCCCCCHHHHHHhhccCCceEE-EEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEE
Q 029462 17 VEEISRLVFWFATFAMIVEDLRGPFGQFGRLKD-IYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVV 95 (193)
Q Consensus 17 ~~~~~rl~V~nl~~~~t~~~l~~~F~~~G~i~~-v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l~v~ 95 (193)
.....+|||+|||+.+++++|+++|.+||.|.. |.|+.+ .+|+++|||||+|.+.++|++||.. |+..|+|+.|.|.
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~ 89 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIF 89 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEE
Confidence 345578999999999999999999999999997 888888 7999999999999999999999987 9999999999999
Q ss_pred EeecCC
Q 029462 96 FAEENR 101 (193)
Q Consensus 96 ~a~~~~ 101 (193)
++....
T Consensus 90 ~~~~~~ 95 (104)
T 1wg5_A 90 KSSRAE 95 (104)
T ss_dssp EECTTT
T ss_pred ECCHHH
Confidence 986543
No 109
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.84 E-value=9.6e-21 Score=127.57 Aligned_cols=80 Identities=24% Similarity=0.375 Sum_probs=71.4
Q ss_pred ccccCccEEEEeCCCC-CCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEE
Q 029462 15 AVVEEISRLVFWFATF-AMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELT 93 (193)
Q Consensus 15 ~~~~~~~rl~V~nl~~-~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l~ 93 (193)
....+.++|||+|||+ .+++++|+++|++||.|..|.|. +|||||+|.+.++|+.||..|||..|.|+.|.
T Consensus 5 ~~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 76 (96)
T 2kvi_A 5 HNIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLI 76 (96)
T ss_dssp ----CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBC
T ss_pred ccCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEE
Confidence 3455678899999998 99999999999999999999985 78999999999999999999999999999999
Q ss_pred EEEeecCCC
Q 029462 94 VVFAEENRK 102 (193)
Q Consensus 94 v~~a~~~~~ 102 (193)
|+++.+...
T Consensus 77 V~~a~~~~~ 85 (96)
T 2kvi_A 77 LEVSSSNAR 85 (96)
T ss_dssp EEEEECCCC
T ss_pred EEEcCcCCC
Confidence 999976653
No 110
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=2.6e-20 Score=126.58 Aligned_cols=82 Identities=24% Similarity=0.272 Sum_probs=73.8
Q ss_pred ccCccEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEEE
Q 029462 17 VEEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 96 (193)
Q Consensus 17 ~~~~~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l~v~~ 96 (193)
..+.++|||+|||+++++++|+++|..|+ .|.++.++.++.++|||||+|.+.++|++||..||+..|+|+.|.|++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDW 88 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 34567799999999999999999999874 566777777899999999999999999999999999999999999999
Q ss_pred eecCC
Q 029462 97 AEENR 101 (193)
Q Consensus 97 a~~~~ 101 (193)
++++.
T Consensus 89 a~~~~ 93 (102)
T 2fc8_A 89 AKPKG 93 (102)
T ss_dssp CCCCC
T ss_pred ecCCC
Confidence 97654
No 111
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=2.2e-20 Score=124.27 Aligned_cols=77 Identities=19% Similarity=0.308 Sum_probs=71.2
Q ss_pred ccCccEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEEE
Q 029462 17 VEEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 96 (193)
Q Consensus 17 ~~~~~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l~v~~ 96 (193)
....++|||+|||+.+++++|+++|++||.|..|.|+ ++||||+|.+.++|++||..|||..|+|+.|.|++
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 77 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV--------KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVEL 77 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 3455779999999999999999999999999999998 55999999999999999999999999999999999
Q ss_pred eecCC
Q 029462 97 AEENR 101 (193)
Q Consensus 97 a~~~~ 101 (193)
+.+..
T Consensus 78 a~~~~ 82 (90)
T 2dnp_A 78 STKGQ 82 (90)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 97664
No 112
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.1e-20 Score=128.89 Aligned_cols=81 Identities=12% Similarity=0.092 Sum_probs=73.5
Q ss_pred cCccEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEe
Q 029462 18 EEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 97 (193)
Q Consensus 18 ~~~~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l~v~~a 97 (193)
....+|||+|||+++++++|+++|.+||.| .|.|+.++ +|+++|||||+|.+.++|++|| .||+..|+|+.|.|.++
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~~ 89 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAM-AKDKANMQHRYVELFLN 89 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHH-TTSSCCSSSSCCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHH-HhCCCeECCcEEEEEEC
Confidence 444679999999999999999999999954 99999987 8999999999999999999999 57999999999999988
Q ss_pred ecCC
Q 029462 98 EENR 101 (193)
Q Consensus 98 ~~~~ 101 (193)
.+..
T Consensus 90 ~~~~ 93 (102)
T 1wez_A 90 STAG 93 (102)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6543
No 113
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.84 E-value=8.4e-21 Score=131.21 Aligned_cols=78 Identities=12% Similarity=0.041 Sum_probs=70.6
Q ss_pred CccEEEEeCCCCCCCHHHHHHhhccCC-ceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEe
Q 029462 19 EISRLVFWFATFAMIVEDLRGPFGQFG-RLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 97 (193)
Q Consensus 19 ~~~rl~V~nl~~~~t~~~l~~~F~~~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l~v~~a 97 (193)
...+|||+|||+++++++|+++|++|| +|..|.|+.+ .++|||||+|.+.++|++||..|||..|+|+.|.|+++
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a 102 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERD 102 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEES
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 446799999999999999999999999 8999988632 46899999999999999999999999999999999998
Q ss_pred ecC
Q 029462 98 EEN 100 (193)
Q Consensus 98 ~~~ 100 (193)
...
T Consensus 103 ~~~ 105 (111)
T 2jvr_A 103 DNP 105 (111)
T ss_dssp CC-
T ss_pred CCC
Confidence 643
No 114
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=3.4e-20 Score=127.68 Aligned_cols=80 Identities=18% Similarity=0.307 Sum_probs=73.8
Q ss_pred ccCccEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEEE
Q 029462 17 VEEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 96 (193)
Q Consensus 17 ~~~~~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l~v~~ 96 (193)
....++|||+|||..+++++|+++|.+||.|..|.|+.+ +|||||+|.+.++|++||..|||..|+|+.|.|.|
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 95 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYW 95 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEe
Confidence 445678999999999999999999999999999999865 79999999999999999999999999999999999
Q ss_pred eecCCC
Q 029462 97 AEENRK 102 (193)
Q Consensus 97 a~~~~~ 102 (193)
+.+...
T Consensus 96 a~~~~~ 101 (109)
T 1x4g_A 96 GKESPD 101 (109)
T ss_dssp CCCCCS
T ss_pred cCCCCC
Confidence 977653
No 115
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.7e-21 Score=137.26 Aligned_cols=83 Identities=17% Similarity=0.075 Sum_probs=75.3
Q ss_pred ccCccEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEEE
Q 029462 17 VEEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 96 (193)
Q Consensus 17 ~~~~~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l~v~~ 96 (193)
..+..+|||+|||+++++++|+++|.+||.|..+.++.+..+|.++|||||+|.+.++|++||. ||+..|+|+.|.|.+
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~ 100 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHP 100 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 3455789999999999999999999999999886666666799999999999999999999998 999999999999999
Q ss_pred eecC
Q 029462 97 AEEN 100 (193)
Q Consensus 97 a~~~ 100 (193)
+..+
T Consensus 101 a~~~ 104 (124)
T 1wel_A 101 ITKK 104 (124)
T ss_dssp ECHH
T ss_pred CCHH
Confidence 8754
No 116
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=1.3e-20 Score=127.18 Aligned_cols=80 Identities=24% Similarity=0.285 Sum_probs=71.4
Q ss_pred ccCccEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEEE
Q 029462 17 VEEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 96 (193)
Q Consensus 17 ~~~~~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l~v~~ 96 (193)
....++|||+|||+.+++++|+++|.+||.|. +.++. +.++|||||+|.+.++|++||..|||..|+|+.|.|++
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~----~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 90 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTW----QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVAL 90 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEE----ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEc----CCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 34457899999999999999999999999996 56653 36689999999999999999999999999999999999
Q ss_pred eecCC
Q 029462 97 AEENR 101 (193)
Q Consensus 97 a~~~~ 101 (193)
+.++.
T Consensus 91 a~~~~ 95 (97)
T 2e5j_A 91 ARQQR 95 (97)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 97654
No 117
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=1.9e-20 Score=126.74 Aligned_cols=79 Identities=28% Similarity=0.464 Sum_probs=73.1
Q ss_pred ccCccEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEEE
Q 029462 17 VEEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 96 (193)
Q Consensus 17 ~~~~~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l~v~~ 96 (193)
..+.++|||+|||..+++++|+++|.+||.|..|.|+.+ +|||||+|.+.++|++||..|||..|+|+.|.|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRF 85 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEE
Confidence 455678999999999999999999999999999999854 79999999999999999999999999999999999
Q ss_pred eecCC
Q 029462 97 AEENR 101 (193)
Q Consensus 97 a~~~~ 101 (193)
+.++.
T Consensus 86 a~~~~ 90 (99)
T 2cpj_A 86 ACHSA 90 (99)
T ss_dssp SSCCS
T ss_pred cCCCC
Confidence 97654
No 118
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.83 E-value=8.9e-21 Score=132.57 Aligned_cols=81 Identities=15% Similarity=0.067 Sum_probs=75.0
Q ss_pred cCccEEEEeCCCCCCCHHHHHHhhccCCc---eEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEE
Q 029462 18 EEISRLVFWFATFAMIVEDLRGPFGQFGR---LKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 94 (193)
Q Consensus 18 ~~~~rl~V~nl~~~~t~~~l~~~F~~~G~---i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l~v 94 (193)
.+..+|||+|||+++++++|+++|+.||. |..|.|+.++. |+++|||||+|.+.++|++||. ||+..|+|+.|.|
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V 92 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEV 92 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEE
Confidence 45577999999999999999999999999 89999998876 9999999999999999999998 9999999999999
Q ss_pred EEeecC
Q 029462 95 VFAEEN 100 (193)
Q Consensus 95 ~~a~~~ 100 (193)
.++..+
T Consensus 93 ~~a~~~ 98 (118)
T 2db1_A 93 FKSHRT 98 (118)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 998644
No 119
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=2.6e-21 Score=134.39 Aligned_cols=82 Identities=24% Similarity=0.325 Sum_probs=73.2
Q ss_pred ccCccEEEEeCCCCCCCHHHHHHhhccCCceE----EEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEE
Q 029462 17 VEEISRLVFWFATFAMIVEDLRGPFGQFGRLK----DIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGREL 92 (193)
Q Consensus 17 ~~~~~rl~V~nl~~~~t~~~l~~~F~~~G~i~----~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l 92 (193)
..+.++|||+|||..+++++|+++|.+||.|. .+.+. +|.++|||||+|.+.++|++||..|||..|+|+.|
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~----~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l 97 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM----TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKIL 97 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE----CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC----CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEE
Confidence 34567899999999999999999999999984 44444 78889999999999999999999999999999999
Q ss_pred EEEEeecCCC
Q 029462 93 TVVFAEENRK 102 (193)
Q Consensus 93 ~v~~a~~~~~ 102 (193)
.|+++.++..
T Consensus 98 ~v~~a~~~~~ 107 (115)
T 2cpx_A 98 VIEFGKNKKQ 107 (115)
T ss_dssp EEEECCCCSC
T ss_pred EEEEccCCCC
Confidence 9999987654
No 120
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.83 E-value=1.5e-21 Score=132.59 Aligned_cols=83 Identities=19% Similarity=0.219 Sum_probs=75.1
Q ss_pred cCccEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEe
Q 029462 18 EEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 97 (193)
Q Consensus 18 ~~~~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l~v~~a 97 (193)
....+|||+|||+++++++|+++|.+||.|.. .++.+..+|.++|||||+|.+.++|++||+ |||..|.|+.|.|+++
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 92 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEc
Confidence 34568999999999999999999999999887 666777788999999999999999999998 9999999999999999
Q ss_pred ecCCC
Q 029462 98 EENRK 102 (193)
Q Consensus 98 ~~~~~ 102 (193)
.++..
T Consensus 93 ~~~~~ 97 (101)
T 1fj7_A 93 KGRDG 97 (101)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 76553
No 121
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=2.2e-20 Score=128.77 Aligned_cols=79 Identities=24% Similarity=0.372 Sum_probs=72.8
Q ss_pred CccEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEee
Q 029462 19 EISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAE 98 (193)
Q Consensus 19 ~~~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l~v~~a~ 98 (193)
+..+|||+|||+++++++|+++|+.| .|..|.|+.++. |+++|||||+|.+.++|++|| .||+..|+|+.|.|..+.
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 34679999999999999999999999 899999999875 999999999999999999999 799999999999998885
Q ss_pred cC
Q 029462 99 EN 100 (193)
Q Consensus 99 ~~ 100 (193)
..
T Consensus 92 ~~ 93 (109)
T 2dnn_A 92 ER 93 (109)
T ss_dssp HH
T ss_pred cc
Confidence 43
No 122
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.83 E-value=1.7e-20 Score=127.38 Aligned_cols=76 Identities=26% Similarity=0.486 Sum_probs=71.4
Q ss_pred cEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEeecC
Q 029462 21 SRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEEN 100 (193)
Q Consensus 21 ~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l~v~~a~~~ 100 (193)
++|||+|||+++++++|+++|++||.|..|.|+.+ ++|||||+|.+.++|++||..|||..|+|+.|.|+++.+.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 47999999999999999999999999999999875 5899999999999999999999999999999999999765
Q ss_pred C
Q 029462 101 R 101 (193)
Q Consensus 101 ~ 101 (193)
.
T Consensus 76 ~ 76 (101)
T 2hvz_A 76 P 76 (101)
T ss_dssp C
T ss_pred C
Confidence 4
No 123
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.83 E-value=1.1e-20 Score=135.26 Aligned_cols=81 Identities=16% Similarity=0.049 Sum_probs=75.1
Q ss_pred cCccEEEEeCCCCCCCHHHHHHhhccCCc---eEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEE
Q 029462 18 EEISRLVFWFATFAMIVEDLRGPFGQFGR---LKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 94 (193)
Q Consensus 18 ~~~~rl~V~nl~~~~t~~~l~~~F~~~G~---i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l~v 94 (193)
.+..+|||+|||+++|+++|+++|++||. |..|.|+.++. |+++|||||+|.+.++|++||. ||+..|+|+.|.|
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V 119 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEV 119 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEE
Confidence 45578999999999999999999999999 88999999886 9999999999999999999998 9999999999999
Q ss_pred EEeecC
Q 029462 95 VFAEEN 100 (193)
Q Consensus 95 ~~a~~~ 100 (193)
.++...
T Consensus 120 ~~a~~~ 125 (136)
T 2hgl_A 120 FKSHRT 125 (136)
T ss_dssp EECCHH
T ss_pred EECChH
Confidence 998543
No 124
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.82 E-value=1.5e-20 Score=126.54 Aligned_cols=82 Identities=20% Similarity=0.379 Sum_probs=74.4
Q ss_pred ccCccEEEEeCCCCCCCHHHHH----HhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEE
Q 029462 17 VEEISRLVFWFATFAMIVEDLR----GPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGREL 92 (193)
Q Consensus 17 ~~~~~rl~V~nl~~~~t~~~l~----~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l 92 (193)
..+.++|||+|||.++++++|+ ++|.+||.|..|.|+. +|.++|||||+|.+.++|+.|+..|||..|+|+.|
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 81 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEE
Confidence 3456789999999999999999 9999999999998873 56778999999999999999999999999999999
Q ss_pred EEEEeecCC
Q 029462 93 TVVFAEENR 101 (193)
Q Consensus 93 ~v~~a~~~~ 101 (193)
.|+++.+..
T Consensus 82 ~v~~a~~~~ 90 (97)
T 1nu4_A 82 RIQYAKTDS 90 (97)
T ss_dssp EEEECSSCC
T ss_pred EEEEccCCC
Confidence 999997654
No 125
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.82 E-value=2.2e-20 Score=139.49 Aligned_cols=83 Identities=25% Similarity=0.331 Sum_probs=78.1
Q ss_pred cCccEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEe
Q 029462 18 EEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 97 (193)
Q Consensus 18 ~~~~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l~v~~a 97 (193)
...++|||+|||+.+++++|+++|++||.|..|.|+.+. +|.++|||||+|.+.++|++||..|||..|+|+.|.|++|
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a 164 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 164 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 445689999999999999999999999999999999988 8999999999999999999999999999999999999999
Q ss_pred ecCC
Q 029462 98 EENR 101 (193)
Q Consensus 98 ~~~~ 101 (193)
....
T Consensus 165 ~~~~ 168 (177)
T 2f3j_A 165 ASQI 168 (177)
T ss_dssp SSGG
T ss_pred cCCC
Confidence 7654
No 126
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.82 E-value=3e-20 Score=124.91 Aligned_cols=80 Identities=18% Similarity=0.329 Sum_probs=72.2
Q ss_pred ccCccEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEEE
Q 029462 17 VEEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 96 (193)
Q Consensus 17 ~~~~~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l~v~~ 96 (193)
..+..+|||+|||..+++++|+++|.+||.|..+ ..++.++|||||+|.+.++|++||..|||..|+|+.|.|++
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 87 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYY 87 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 4456789999999999999999999999988766 34778899999999999999999999999999999999999
Q ss_pred eecCC
Q 029462 97 AEENR 101 (193)
Q Consensus 97 a~~~~ 101 (193)
+.++.
T Consensus 88 a~~~~ 92 (96)
T 1fjc_A 88 TGEKG 92 (96)
T ss_dssp CSSSC
T ss_pred cCCCC
Confidence 97654
No 127
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=3.9e-20 Score=121.56 Aligned_cols=75 Identities=24% Similarity=0.331 Sum_probs=69.5
Q ss_pred cCccEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHh-CCceecCcEEEEEE
Q 029462 18 EEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM-DGYLLLGRELTVVF 96 (193)
Q Consensus 18 ~~~~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l-~g~~i~g~~l~v~~ 96 (193)
....+|||+|||..+++++|+++|.+||.|..|.|+.+ +|||||+|.+.++|++|+..| |+..|+|+.|.|+|
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ 83 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKW 83 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEE
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEe
Confidence 34467999999999999999999999999999999854 799999999999999999999 99999999999999
Q ss_pred ee
Q 029462 97 AE 98 (193)
Q Consensus 97 a~ 98 (193)
|+
T Consensus 84 ak 85 (85)
T 2ytc_A 84 GR 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 128
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=2.2e-20 Score=128.98 Aligned_cols=79 Identities=16% Similarity=0.135 Sum_probs=70.5
Q ss_pred ccCccEEEEeCCCCC-CCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCC--ceecCcEEE
Q 029462 17 VEEISRLVFWFATFA-MIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDG--YLLLGRELT 93 (193)
Q Consensus 17 ~~~~~rl~V~nl~~~-~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g--~~i~g~~l~ 93 (193)
..+.++|||+|||++ +++++|+++|++||.|..|.|+. .+|||||+|++.++|++||..||+ ..|.|+.|.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 445678999999998 99999999999999999999974 389999999999999999998864 569999999
Q ss_pred EEEeecCC
Q 029462 94 VVFAEENR 101 (193)
Q Consensus 94 v~~a~~~~ 101 (193)
|++|..+.
T Consensus 96 V~~a~~~~ 103 (112)
T 1x4f_A 96 VDLSEKYK 103 (112)
T ss_dssp EEEECSCS
T ss_pred EEECcccc
Confidence 99997654
No 129
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=5.5e-20 Score=127.17 Aligned_cols=77 Identities=17% Similarity=0.242 Sum_probs=71.0
Q ss_pred CccEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEee
Q 029462 19 EISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAE 98 (193)
Q Consensus 19 ~~~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l~v~~a~ 98 (193)
..++|||+|||+.+++++|+++|.+||.|..|.|+. .+|||||+|.+.++|+.||..|||..|+|+.|.|+||.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 346799999999999999999999999999999874 37899999999999999999999999999999999997
Q ss_pred cCC
Q 029462 99 ENR 101 (193)
Q Consensus 99 ~~~ 101 (193)
...
T Consensus 83 ~~~ 85 (111)
T 1whx_A 83 IGV 85 (111)
T ss_dssp TTT
T ss_pred CCc
Confidence 654
No 130
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.82 E-value=1.4e-20 Score=122.80 Aligned_cols=72 Identities=28% Similarity=0.464 Sum_probs=67.1
Q ss_pred cEEEEeCCCCCC------CHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCc-EEE
Q 029462 21 SRLVFWFATFAM------IVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGR-ELT 93 (193)
Q Consensus 21 ~rl~V~nl~~~~------t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~-~l~ 93 (193)
++|||+|||..+ ++++|+++|++||.|..|.|+ +.+|.++|||||+|.+.++|++||..|||..|+|+ .|.
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~ 79 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 79 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEE
Confidence 579999999999 779999999999999999987 45889999999999999999999999999999999 887
Q ss_pred E
Q 029462 94 V 94 (193)
Q Consensus 94 v 94 (193)
|
T Consensus 80 V 80 (81)
T 2krb_A 80 V 80 (81)
T ss_dssp C
T ss_pred e
Confidence 6
No 131
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.81 E-value=7.8e-21 Score=122.05 Aligned_cols=75 Identities=21% Similarity=0.239 Sum_probs=71.3
Q ss_pred EEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEe
Q 029462 22 RLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 97 (193)
Q Consensus 22 rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l~v~~a 97 (193)
+|||+|||.++++++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|++||. +++..|+|+.|.|.+|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 48999999999999999999999999999999999899999999999999999999997 4899999999999875
No 132
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.81 E-value=3.9e-20 Score=125.58 Aligned_cols=75 Identities=20% Similarity=0.248 Sum_probs=70.1
Q ss_pred CccEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEee
Q 029462 19 EISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAE 98 (193)
Q Consensus 19 ~~~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l~v~~a~ 98 (193)
..++|||+|||.++++++|+++|.+||.|..|.|.. .+|||||+|.+.++|++||..|||..|+|+.|.|+|++
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 99 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP------EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGK 99 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEecc
Confidence 356899999999999999999999999999999873 48999999999999999999999999999999999986
Q ss_pred c
Q 029462 99 E 99 (193)
Q Consensus 99 ~ 99 (193)
+
T Consensus 100 ~ 100 (101)
T 2la4_A 100 E 100 (101)
T ss_dssp C
T ss_pred C
Confidence 5
No 133
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.70 E-value=9.7e-22 Score=136.91 Aligned_cols=84 Identities=26% Similarity=0.304 Sum_probs=78.6
Q ss_pred cCccEEEEeCCCCCCCHHHHHHhhccCCceEE--------EEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecC
Q 029462 18 EEISRLVFWFATFAMIVEDLRGPFGQFGRLKD--------IYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLG 89 (193)
Q Consensus 18 ~~~~rl~V~nl~~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g 89 (193)
.+..+|||+|||..+++++|+++|++||.|.. |.|+.++.++.++|||||+|.+.++|++||..|||..|.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 34567999999999999999999999999998 8899998899999999999999999999999999999999
Q ss_pred cEEEEEEeecCC
Q 029462 90 RELTVVFAEENR 101 (193)
Q Consensus 90 ~~l~v~~a~~~~ 101 (193)
+.|.|+++.++.
T Consensus 85 ~~l~V~~a~~~~ 96 (116)
T 2lcw_A 85 NPIKVSFATRRA 96 (116)
Confidence 999999997654
No 134
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.81 E-value=1.5e-19 Score=124.66 Aligned_cols=76 Identities=26% Similarity=0.396 Sum_probs=70.0
Q ss_pred cCccEEEEeCCCCC-CCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEEE
Q 029462 18 EEISRLVFWFATFA-MIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 96 (193)
Q Consensus 18 ~~~~rl~V~nl~~~-~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l~v~~ 96 (193)
...++|||+|||+. +++++|+++|.+||.|..|.|. +|||||+|.+.++|++||..||+..|+|+.|.|++
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 96 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVH--------KGYAFVQYSNERHARAAVLGENGRVLAGQTLDINM 96 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEEE--------TTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEE
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 34468999999999 9999999999999999999983 89999999999999999999999999999999999
Q ss_pred eecCC
Q 029462 97 AEENR 101 (193)
Q Consensus 97 a~~~~ 101 (193)
+....
T Consensus 97 a~~~~ 101 (110)
T 1wf1_A 97 AGEPK 101 (110)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 97543
No 135
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=4.9e-20 Score=123.20 Aligned_cols=77 Identities=26% Similarity=0.334 Sum_probs=68.8
Q ss_pred cCccEEEEeCCCCCCCHHHHHHhhccCCc-eEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCC-ceecCcEEEEE
Q 029462 18 EEISRLVFWFATFAMIVEDLRGPFGQFGR-LKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDG-YLLLGRELTVV 95 (193)
Q Consensus 18 ~~~~rl~V~nl~~~~t~~~l~~~F~~~G~-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g-~~i~g~~l~v~ 95 (193)
...++|||+|||+++++++|+++|++||. |..+.+. .+|||||+|.+.++|++||..||| ..|+|+.|.|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 78 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVD 78 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEE
Confidence 44578999999999999999999999999 6655553 389999999999999999999999 99999999999
Q ss_pred EeecCC
Q 029462 96 FAEENR 101 (193)
Q Consensus 96 ~a~~~~ 101 (193)
++.++.
T Consensus 79 ~a~~~~ 84 (93)
T 2cqh_A 79 YSVSKK 84 (93)
T ss_dssp ECCCCC
T ss_pred EccCcc
Confidence 997654
No 136
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.81 E-value=1.3e-20 Score=129.39 Aligned_cols=81 Identities=14% Similarity=0.089 Sum_probs=75.2
Q ss_pred cCccEEEEeCCCCCCCHHHHHHhhccCCc---eEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEE
Q 029462 18 EEISRLVFWFATFAMIVEDLRGPFGQFGR---LKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 94 (193)
Q Consensus 18 ~~~~rl~V~nl~~~~t~~~l~~~F~~~G~---i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l~v 94 (193)
.+..+|||+|||+++++++|+++|..||. |..|.|+.++. |.++|||||+|.+.++|++||. ||+..|+|+.|.|
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V 86 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEV 86 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEE
Confidence 45578999999999999999999999988 89999999886 9999999999999999999998 9999999999999
Q ss_pred EEeecC
Q 029462 95 VFAEEN 100 (193)
Q Consensus 95 ~~a~~~ 100 (193)
.++.+.
T Consensus 87 ~~a~~~ 92 (107)
T 2lmi_A 87 YEINNE 92 (107)
T ss_dssp EECCHH
T ss_pred EECCHH
Confidence 998654
No 137
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.81 E-value=1.3e-19 Score=125.84 Aligned_cols=81 Identities=28% Similarity=0.466 Sum_probs=74.0
Q ss_pred cCccEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEe
Q 029462 18 EEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 97 (193)
Q Consensus 18 ~~~~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l~v~~a 97 (193)
+...+|||+|||..+++++|+++|++||.|..|.|+.+ +.++|||||+|.+.++|+.||..|||..|+|+.|.|+++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 82 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYY 82 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 34568999999999999999999999999999999865 455899999999999999999999999999999999999
Q ss_pred ecCC
Q 029462 98 EENR 101 (193)
Q Consensus 98 ~~~~ 101 (193)
.+..
T Consensus 83 ~~~~ 86 (115)
T 3lqv_A 83 NANR 86 (115)
T ss_dssp CHHH
T ss_pred cCCh
Confidence 7644
No 138
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.81 E-value=1.6e-19 Score=138.24 Aligned_cols=83 Identities=20% Similarity=0.290 Sum_probs=77.4
Q ss_pred cCccEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEe
Q 029462 18 EEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 97 (193)
Q Consensus 18 ~~~~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l~v~~a 97 (193)
.++++|||+|||+++++++|+++|++||+|..|.|+.++.++.++|||||+|.+.++|++||..||+..+.|+.|.|.++
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 45578999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ecC
Q 029462 98 EEN 100 (193)
Q Consensus 98 ~~~ 100 (193)
...
T Consensus 93 ~~~ 95 (213)
T 4f02_A 93 QRD 95 (213)
T ss_dssp CCC
T ss_pred ccc
Confidence 643
No 139
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=1.4e-19 Score=121.34 Aligned_cols=78 Identities=18% Similarity=0.109 Sum_probs=68.9
Q ss_pred cCccEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEe
Q 029462 18 EEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 97 (193)
Q Consensus 18 ~~~~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l~v~~a 97 (193)
....+|||+|||+++++++|+++|.+||.|..| +.++.+|. ||||+|.+.++|++||. |||..|+|+.|.|+++
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a 79 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPR 79 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEEC
Confidence 345689999999999999999999999999987 44555554 99999999999999999 9999999999999988
Q ss_pred ecCC
Q 029462 98 EENR 101 (193)
Q Consensus 98 ~~~~ 101 (193)
..+.
T Consensus 80 ~~~~ 83 (94)
T 2e5g_A 80 EQKE 83 (94)
T ss_dssp CCSC
T ss_pred CcCC
Confidence 6544
No 140
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=1.1e-19 Score=122.07 Aligned_cols=79 Identities=20% Similarity=0.218 Sum_probs=71.5
Q ss_pred cCccEEEEeCCCCCCCHHHHHHhhccCCceEEE-EEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEEE
Q 029462 18 EEISRLVFWFATFAMIVEDLRGPFGQFGRLKDI-YLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 96 (193)
Q Consensus 18 ~~~~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v-~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l~v~~ 96 (193)
....+|||+|||+.+++++|+++|.+||.|..| .|+.++.++ .|||+|.+.++|++||..|||..|+|+.|.|++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 88 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTLKVAY 88 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 445779999999999999999999999999999 588775443 399999999999999999999999999999999
Q ss_pred eecC
Q 029462 97 AEEN 100 (193)
Q Consensus 97 a~~~ 100 (193)
+.++
T Consensus 89 a~~~ 92 (96)
T 2e44_A 89 IPDE 92 (96)
T ss_dssp CCCC
T ss_pred cCcc
Confidence 9776
No 141
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=4.4e-19 Score=119.52 Aligned_cols=78 Identities=26% Similarity=0.362 Sum_probs=70.4
Q ss_pred ccCccEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEEE
Q 029462 17 VEEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 96 (193)
Q Consensus 17 ~~~~~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l~v~~ 96 (193)
....++|||+|| ++++++|+++|.+||.|..|.|. ..+|||||+|.+.++|++||..|||..|+|+.|.|++
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 83 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 83 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEEC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 345678999996 89999999999999999999985 4489999999999999999999999999999999999
Q ss_pred eecCCC
Q 029462 97 AEENRK 102 (193)
Q Consensus 97 a~~~~~ 102 (193)
+.++..
T Consensus 84 a~~~~~ 89 (97)
T 1x5p_A 84 ARKQPM 89 (97)
T ss_dssp CSSCCC
T ss_pred CCCCCC
Confidence 976653
No 142
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.81 E-value=1.9e-20 Score=134.95 Aligned_cols=86 Identities=24% Similarity=0.329 Sum_probs=73.5
Q ss_pred ccCccEEEEeCCCCCCCHHHHHHhhccCCceEEE--EEcCC---CCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcE
Q 029462 17 VEEISRLVFWFATFAMIVEDLRGPFGQFGRLKDI--YLPRD---YYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRE 91 (193)
Q Consensus 17 ~~~~~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v--~i~~~---~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~ 91 (193)
....++|||+|||+.+++++|+++|.+||.|..| .++.+ ..+|.++|||||+|.+.++|++||..|||..|+|+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 4456789999999999999999999999998764 11111 237888999999999999999999999999999999
Q ss_pred EEEEEeecCCC
Q 029462 92 LTVVFAEENRK 102 (193)
Q Consensus 92 l~v~~a~~~~~ 102 (193)
|.|++|.....
T Consensus 122 l~V~~a~~~~~ 132 (143)
T 3egn_A 122 MVVQFARSARP 132 (143)
T ss_dssp CEEEECCCSCC
T ss_pred EEEEECCCCCC
Confidence 99999976553
No 143
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=9.9e-20 Score=125.94 Aligned_cols=80 Identities=15% Similarity=0.191 Sum_probs=70.9
Q ss_pred ccCccEEEE--eCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee-----cC
Q 029462 17 VEEISRLVF--WFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLL-----LG 89 (193)
Q Consensus 17 ~~~~~rl~V--~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i-----~g 89 (193)
..++.+||| +||++.+++++|+++|++||.|..|.|+.+ +|||||+|.+.++|++|+..|||.+| .|
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g 95 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 95 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEEccccCCC
Confidence 345677999 779999999999999999999999988742 79999999999999999999999998 68
Q ss_pred cEEEEEEeecCCC
Q 029462 90 RELTVVFAEENRK 102 (193)
Q Consensus 90 ~~l~v~~a~~~~~ 102 (193)
..|.|.++...+.
T Consensus 96 ~~l~v~~a~~~p~ 108 (114)
T 2cq2_A 96 ITLYLNFVEKVQW 108 (114)
T ss_dssp EECEEEEESCCCC
T ss_pred cEEEEEecccCcc
Confidence 8999999976553
No 144
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.80 E-value=3.1e-19 Score=126.14 Aligned_cols=79 Identities=23% Similarity=0.389 Sum_probs=70.7
Q ss_pred cCccEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceE-EEEEeCCHHHHHHHHHHhCCceecC--cEEEE
Q 029462 18 EEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGF-GFVQYIDPADAADAKYHMDGYLLLG--RELTV 94 (193)
Q Consensus 18 ~~~~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~-afV~f~~~~~a~~Ai~~l~g~~i~g--~~l~v 94 (193)
....+|||+||++.+|+++|.++|++||.|..|.|+.. .+|| |||+|.+.++|+.|+..|||..|.| ..|+|
T Consensus 26 s~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI 100 (130)
T 3zzy_A 26 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRI 100 (130)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEE
T ss_pred CceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEE
Confidence 34456899999999999999999999999999988753 2688 9999999999999999999999998 89999
Q ss_pred EEeecCC
Q 029462 95 VFAEENR 101 (193)
Q Consensus 95 ~~a~~~~ 101 (193)
+|++...
T Consensus 101 ~~ak~~~ 107 (130)
T 3zzy_A 101 DFSKLTS 107 (130)
T ss_dssp EECSCSS
T ss_pred EecCCCc
Confidence 9998654
No 145
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.80 E-value=1.4e-20 Score=135.08 Aligned_cols=81 Identities=11% Similarity=0.060 Sum_probs=73.6
Q ss_pred cCccEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEe
Q 029462 18 EEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 97 (193)
Q Consensus 18 ~~~~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l~v~~a 97 (193)
....+|||+|||+++|+++|+++|++|| |+.|.|+.++. |+++|||||+|++.++|++|| .||+..|+|+.|.|.++
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a 120 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLN 120 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEEC
Confidence 3446799999999999999999999999 67999999975 999999999999999999999 88999999999999998
Q ss_pred ecCC
Q 029462 98 EENR 101 (193)
Q Consensus 98 ~~~~ 101 (193)
....
T Consensus 121 ~~~~ 124 (139)
T 2hgn_A 121 STTG 124 (139)
T ss_dssp CCSC
T ss_pred CCCC
Confidence 7654
No 146
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.80 E-value=6.7e-20 Score=124.59 Aligned_cols=80 Identities=20% Similarity=0.325 Sum_probs=74.9
Q ss_pred CccEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEee
Q 029462 19 EISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAE 98 (193)
Q Consensus 19 ~~~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l~v~~a~ 98 (193)
..++|||+|||+.+++++|+++|++||.|..|.|+.++ +|.++|||||+|.+.++|++||. ++..|+|+.|.|.++.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECC
Confidence 34679999999999999999999999999999999998 99999999999999999999997 9999999999999997
Q ss_pred cCC
Q 029462 99 ENR 101 (193)
Q Consensus 99 ~~~ 101 (193)
.+.
T Consensus 85 ~~~ 87 (102)
T 2xs2_A 85 RKQ 87 (102)
T ss_dssp ECC
T ss_pred cCc
Confidence 654
No 147
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.80 E-value=7.1e-20 Score=129.20 Aligned_cols=81 Identities=20% Similarity=0.151 Sum_probs=72.4
Q ss_pred ccCccEEEEeCCCCCCCHHHHHHhhccCCceE--EEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEE
Q 029462 17 VEEISRLVFWFATFAMIVEDLRGPFGQFGRLK--DIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 94 (193)
Q Consensus 17 ~~~~~rl~V~nl~~~~t~~~l~~~F~~~G~i~--~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l~v 94 (193)
.....+|||+|||+++|+++|+++|++| .|. .|.|+.++. |+++|||||+|.+.++|++||.. ++..|+|+.|.|
T Consensus 39 ~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~V 115 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGK-HKERIGHRYIEV 115 (126)
T ss_dssp SSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEEE
Confidence 3455779999999999999999999999 677 899999886 99999999999999999999974 789999999999
Q ss_pred EEeecC
Q 029462 95 VFAEEN 100 (193)
Q Consensus 95 ~~a~~~ 100 (193)
..+..+
T Consensus 116 ~~a~~~ 121 (126)
T 2hgm_A 116 FKSSQE 121 (126)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 988543
No 148
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.80 E-value=1.6e-19 Score=132.28 Aligned_cols=79 Identities=22% Similarity=0.339 Sum_probs=70.6
Q ss_pred CccEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecC--cEEEEEE
Q 029462 19 EISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLG--RELTVVF 96 (193)
Q Consensus 19 ~~~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g--~~l~v~~ 96 (193)
...+|||+||++.+++++|+++|++||+|..|.|... ..+|||||+|.+.++|++|++.|||..|.| +.|+|+|
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~ 120 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDF 120 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEE
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEE
Confidence 3456999999999999999999999999999998633 347899999999999999999999999966 9999999
Q ss_pred eecCC
Q 029462 97 AEENR 101 (193)
Q Consensus 97 a~~~~ 101 (193)
++++.
T Consensus 121 Ak~~~ 125 (164)
T 1sjr_A 121 SKLTS 125 (164)
T ss_dssp CSSSS
T ss_pred ecCCc
Confidence 98654
No 149
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.80 E-value=1.8e-19 Score=130.79 Aligned_cols=80 Identities=29% Similarity=0.488 Sum_probs=73.7
Q ss_pred ccCccEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEEE
Q 029462 17 VEEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 96 (193)
Q Consensus 17 ~~~~~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l~v~~ 96 (193)
....++|||+|||+.+++++|+++|++||.|..|.|+.+ ++|||||+|.+.++|+.||..|||..|+|+.|.|++
T Consensus 70 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 144 (150)
T 2i2y_A 70 CPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVEL 144 (150)
T ss_dssp STTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 445678999999999999999999999999999999876 489999999999999999999999999999999999
Q ss_pred eecCC
Q 029462 97 AEENR 101 (193)
Q Consensus 97 a~~~~ 101 (193)
+.++.
T Consensus 145 a~~~~ 149 (150)
T 2i2y_A 145 SNGEK 149 (150)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 97653
No 150
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.80 E-value=5.1e-19 Score=129.28 Aligned_cols=81 Identities=30% Similarity=0.383 Sum_probs=77.1
Q ss_pred cCccEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEe
Q 029462 18 EEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 97 (193)
Q Consensus 18 ~~~~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l~v~~a 97 (193)
....+|||+|||..+++++|+++|++||.|..|.++.+..+|.++|||||+|.+.++|++|+..|||..|+|+.|.|.||
T Consensus 85 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 164 (166)
T 3md3_A 85 DDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWA 164 (166)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEec
Confidence 34567999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred e
Q 029462 98 E 98 (193)
Q Consensus 98 ~ 98 (193)
+
T Consensus 165 ~ 165 (166)
T 3md3_A 165 A 165 (166)
T ss_dssp C
T ss_pred C
Confidence 5
No 151
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.79 E-value=6.1e-19 Score=123.96 Aligned_cols=75 Identities=19% Similarity=0.262 Sum_probs=67.6
Q ss_pred cEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceE-EEEEeCCHHHHHHHHHHhCCceecC--cEEEEEEe
Q 029462 21 SRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGF-GFVQYIDPADAADAKYHMDGYLLLG--RELTVVFA 97 (193)
Q Consensus 21 ~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~-afV~f~~~~~a~~Ai~~l~g~~i~g--~~l~v~~a 97 (193)
..|||+||++.+++++|+++|++||.|..|.|+. + .|| |||+|.+.++|+.|+..|||..|.| ..|.|++|
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~-~-----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~A 99 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK-R-----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYA 99 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEE-S-----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECC
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEe-C-----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEe
Confidence 4588999999999999999999999999999864 2 386 9999999999999999999999988 58999999
Q ss_pred ecCC
Q 029462 98 EENR 101 (193)
Q Consensus 98 ~~~~ 101 (193)
++..
T Consensus 100 k~~~ 103 (124)
T 2e5i_A 100 RPTR 103 (124)
T ss_dssp SCSC
T ss_pred cCCc
Confidence 7664
No 152
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.79 E-value=6.5e-19 Score=128.83 Aligned_cols=82 Identities=33% Similarity=0.588 Sum_probs=77.6
Q ss_pred ccEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEeec
Q 029462 20 ISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEE 99 (193)
Q Consensus 20 ~~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l~v~~a~~ 99 (193)
.++|||+|||+.+++++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|+.|+..|||..|.|+.|.|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 46799999999999999999999999999999999988999999999999999999999999999999999999999875
Q ss_pred CC
Q 029462 100 NR 101 (193)
Q Consensus 100 ~~ 101 (193)
..
T Consensus 82 ~~ 83 (167)
T 1fxl_A 82 SS 83 (167)
T ss_dssp CC
T ss_pred Cc
Confidence 43
No 153
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=6.5e-20 Score=128.98 Aligned_cols=82 Identities=21% Similarity=0.188 Sum_probs=73.5
Q ss_pred ccCccEEEEeCCCCCCCHHHHHHhhccCCce----EEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEE
Q 029462 17 VEEISRLVFWFATFAMIVEDLRGPFGQFGRL----KDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGREL 92 (193)
Q Consensus 17 ~~~~~rl~V~nl~~~~t~~~l~~~F~~~G~i----~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l 92 (193)
..+..+|||+|||+++|+++|+++|++||.| ..|.|+.+. +|+++|||||+|.+.++|++||.. |+..|+|+.|
T Consensus 20 ~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i 97 (123)
T 2dha_A 20 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYI 97 (123)
T ss_dssp CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEE
Confidence 3556789999999999999999999999975 688888884 899999999999999999999976 9999999999
Q ss_pred EEEEeecC
Q 029462 93 TVVFAEEN 100 (193)
Q Consensus 93 ~v~~a~~~ 100 (193)
.|..+..+
T Consensus 98 ~V~~a~~~ 105 (123)
T 2dha_A 98 ELFRSTAA 105 (123)
T ss_dssp CCEEECHH
T ss_pred EEEECCHH
Confidence 99988543
No 154
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.79 E-value=4.7e-19 Score=135.09 Aligned_cols=86 Identities=27% Similarity=0.397 Sum_probs=80.4
Q ss_pred ccCccEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEEE
Q 029462 17 VEEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 96 (193)
Q Consensus 17 ~~~~~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l~v~~ 96 (193)
.....+|||+|||..+++++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|++||..|||..|+|+.|.|.+
T Consensus 122 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~ 201 (216)
T 2qfj_A 122 ARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGK 201 (216)
T ss_dssp HTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEE
T ss_pred cCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEE
Confidence 34557899999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred eecCCC
Q 029462 97 AEENRK 102 (193)
Q Consensus 97 a~~~~~ 102 (193)
+.+...
T Consensus 202 a~~~~~ 207 (216)
T 2qfj_A 202 AVTPPM 207 (216)
T ss_dssp CSSCSS
T ss_pred ecCCCC
Confidence 987653
No 155
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.79 E-value=5.5e-19 Score=129.56 Aligned_cols=82 Identities=23% Similarity=0.393 Sum_probs=77.9
Q ss_pred ccEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEeec
Q 029462 20 ISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEE 99 (193)
Q Consensus 20 ~~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l~v~~a~~ 99 (193)
.++|||+|||.++++++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|+.|+..|||..|.|+.|.|.++.+
T Consensus 3 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 82 (168)
T 1b7f_A 3 NTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARP 82 (168)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecCC
Confidence 46799999999999999999999999999999999988999999999999999999999999999999999999999876
Q ss_pred CC
Q 029462 100 NR 101 (193)
Q Consensus 100 ~~ 101 (193)
..
T Consensus 83 ~~ 84 (168)
T 1b7f_A 83 GG 84 (168)
T ss_dssp CS
T ss_pred Cc
Confidence 54
No 156
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.79 E-value=1.9e-19 Score=125.80 Aligned_cols=78 Identities=18% Similarity=0.293 Sum_probs=71.1
Q ss_pred cEEEEeCC----CCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCC----HHH----HHHHHH--HhCCce
Q 029462 21 SRLVFWFA----TFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYID----PAD----AADAKY--HMDGYL 86 (193)
Q Consensus 21 ~rl~V~nl----~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~----~~~----a~~Ai~--~l~g~~ 86 (193)
+.|||+|| |+.+++++|+++|+.||+|..|.++.|+.||.++|||||+|.+ +++ |.+||. .|||..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 57999999 9999999999999999999999999999999999999999996 333 888888 789999
Q ss_pred ecCcEEEEEEee
Q 029462 87 LLGRELTVVFAE 98 (193)
Q Consensus 87 i~g~~l~v~~a~ 98 (193)
|+|+.|+|++-.
T Consensus 83 I~Gr~irV~ln~ 94 (136)
T 2j8a_A 83 IMGFKFEVILNK 94 (136)
T ss_dssp ETTEEEEEEECC
T ss_pred ecCcEEEEEECc
Confidence 999999999854
No 157
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.79 E-value=4.3e-19 Score=117.50 Aligned_cols=74 Identities=16% Similarity=0.253 Sum_probs=68.7
Q ss_pred ccEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEeec
Q 029462 20 ISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEE 99 (193)
Q Consensus 20 ~~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l~v~~a~~ 99 (193)
..+|||+|||+++++++|+++|.+| .|..|.|. .++|||||+|.+.++|++||..|||..|+|+.|.|+++..
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 77 (88)
T 1wg1_A 5 SSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPT 77 (88)
T ss_dssp CCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCC
Confidence 4679999999999999999999999 99999885 4589999999999999999999999999999999999865
Q ss_pred C
Q 029462 100 N 100 (193)
Q Consensus 100 ~ 100 (193)
.
T Consensus 78 ~ 78 (88)
T 1wg1_A 78 D 78 (88)
T ss_dssp C
T ss_pred C
Confidence 4
No 158
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.78 E-value=1.3e-18 Score=130.88 Aligned_cols=85 Identities=24% Similarity=0.309 Sum_probs=79.7
Q ss_pred cCccEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEe
Q 029462 18 EEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 97 (193)
Q Consensus 18 ~~~~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l~v~~a 97 (193)
....+|||+|||..+++++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|++|+..|||..|+|+.|.|.++
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 191 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 191 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 45578999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred ecCCC
Q 029462 98 EENRK 102 (193)
Q Consensus 98 ~~~~~ 102 (193)
.+...
T Consensus 192 ~~~~~ 196 (198)
T 2yh0_A 192 SVGAK 196 (198)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 77643
No 159
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.77 E-value=1.1e-18 Score=128.64 Aligned_cols=78 Identities=24% Similarity=0.319 Sum_probs=75.4
Q ss_pred ccEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEe
Q 029462 20 ISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 97 (193)
Q Consensus 20 ~~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l~v~~a 97 (193)
..+|||+|||..+++++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|++|+..|||..|+|+.|.|++|
T Consensus 94 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 94 AHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 467999999999999999999999999999999999889999999999999999999999999999999999999997
No 160
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=1.4e-18 Score=115.06 Aligned_cols=73 Identities=22% Similarity=0.309 Sum_probs=65.2
Q ss_pred ccE-EEEeCCCCCCCHHH----HHHhhccC-CceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEE
Q 029462 20 ISR-LVFWFATFAMIVED----LRGPFGQF-GRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELT 93 (193)
Q Consensus 20 ~~r-l~V~nl~~~~t~~~----l~~~F~~~-G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l~ 93 (193)
..+ |||+|||+.+++++ |.++|.+| |+|..| ++ |+|||+|.+.++|+.|++.|||..|.|++|+
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~ 77 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRII 77 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCE
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEE
Confidence 344 99999999999987 55899999 599988 33 9999999999999999999999999999999
Q ss_pred EEEeecCCC
Q 029462 94 VVFAEENRK 102 (193)
Q Consensus 94 v~~a~~~~~ 102 (193)
|.+|+.+..
T Consensus 78 v~~A~~~sd 86 (96)
T 2diu_A 78 VSFTPKNRE 86 (96)
T ss_dssp EESSCCSCC
T ss_pred EEecCCCcc
Confidence 999987653
No 161
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.77 E-value=1.9e-18 Score=129.89 Aligned_cols=83 Identities=20% Similarity=0.250 Sum_probs=75.1
Q ss_pred CccEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEee
Q 029462 19 EISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAE 98 (193)
Q Consensus 19 ~~~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l~v~~a~ 98 (193)
...+|||+|||..+++++|+++|++||.|..|.|+.+..+|.++|||||+|.+.++|++||.. ++..|+|+.|.|.+|.
T Consensus 103 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~ 181 (196)
T 1l3k_A 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKAL 181 (196)
T ss_dssp CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEECC
T ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEecC
Confidence 447899999999999999999999999999999999988999999999999999999999976 8999999999999998
Q ss_pred cCCC
Q 029462 99 ENRK 102 (193)
Q Consensus 99 ~~~~ 102 (193)
++..
T Consensus 182 ~k~~ 185 (196)
T 1l3k_A 182 SKQE 185 (196)
T ss_dssp ----
T ss_pred ChhH
Confidence 7654
No 162
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.77 E-value=2.8e-18 Score=113.95 Aligned_cols=76 Identities=26% Similarity=0.386 Sum_probs=62.4
Q ss_pred ccCccEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCce--ecCcEEEE
Q 029462 17 VEEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYL--LLGRELTV 94 (193)
Q Consensus 17 ~~~~~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~--i~g~~l~v 94 (193)
.....+|||+|||+++++++|+++|++||.|..|.|+.+ ++|||||+|.+.++|++ |++.. +.|+.|.|
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v 78 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHI 78 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEE
Confidence 345578999999999999999999999999999999874 58999999999999983 56665 45999999
Q ss_pred EEeecCC
Q 029462 95 VFAEENR 101 (193)
Q Consensus 95 ~~a~~~~ 101 (193)
.+|.++.
T Consensus 79 ~~a~~k~ 85 (89)
T 3d2w_A 79 SNAEPKH 85 (89)
T ss_dssp EECC---
T ss_pred EEcCCCC
Confidence 9987654
No 163
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.77 E-value=8.3e-19 Score=133.72 Aligned_cols=86 Identities=27% Similarity=0.372 Sum_probs=76.7
Q ss_pred ccccCccEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEE
Q 029462 15 AVVEEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 94 (193)
Q Consensus 15 ~~~~~~~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l~v 94 (193)
....+.++|||+|||.++++++|+++|++||.|..|.|+.+..+|.++|||||+|.+.++|++||..||+..|.|+.|.|
T Consensus 23 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v 102 (216)
T 2qfj_A 23 GALAIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKV 102 (216)
T ss_dssp HHHHHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEE
T ss_pred cccCcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEE
Confidence 34556678999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred EEeecC
Q 029462 95 VFAEEN 100 (193)
Q Consensus 95 ~~a~~~ 100 (193)
.++...
T Consensus 103 ~~~~~~ 108 (216)
T 2qfj_A 103 GRPSNI 108 (216)
T ss_dssp ECCSCC
T ss_pred ecCCCc
Confidence 887544
No 164
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.77 E-value=7.3e-19 Score=128.91 Aligned_cols=81 Identities=22% Similarity=0.247 Sum_probs=76.3
Q ss_pred CccEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEee
Q 029462 19 EISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAE 98 (193)
Q Consensus 19 ~~~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l~v~~a~ 98 (193)
...+|||+|||..+++++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|++|+. ||+..|+|+.|.|.+|.
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~ 164 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAE 164 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECC
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecC
Confidence 34579999999999999999999999999999999998899999999999999999999997 89999999999999997
Q ss_pred cC
Q 029462 99 EN 100 (193)
Q Consensus 99 ~~ 100 (193)
++
T Consensus 165 pk 166 (167)
T 2cjk_A 165 PR 166 (167)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 165
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.77 E-value=2.2e-18 Score=129.49 Aligned_cols=83 Identities=30% Similarity=0.374 Sum_probs=76.1
Q ss_pred cCccEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEe
Q 029462 18 EEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 97 (193)
Q Consensus 18 ~~~~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l~v~~a 97 (193)
.+..+|||+|||+++++++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|++||.. ++..|.|+.|.|.++
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~~ 89 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRA 89 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeecc
Confidence 4557899999999999999999999999999999999999999999999999999999999965 999999999999998
Q ss_pred ecCC
Q 029462 98 EENR 101 (193)
Q Consensus 98 ~~~~ 101 (193)
....
T Consensus 90 ~~~~ 93 (196)
T 1l3k_A 90 VSRE 93 (196)
T ss_dssp CC--
T ss_pred cCcc
Confidence 6543
No 166
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.77 E-value=1.5e-18 Score=132.80 Aligned_cols=81 Identities=21% Similarity=0.302 Sum_probs=74.4
Q ss_pred CccEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEee
Q 029462 19 EISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAE 98 (193)
Q Consensus 19 ~~~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l~v~~a~ 98 (193)
...+|||+|||+.+++++|+++|++||.|..|.|+.+. +.++|||||+|.+.++|++||..|||..|+|+.|.|.+|.
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~ 179 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 179 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcC
Confidence 44679999999999999999999999999999998874 4469999999999999999999999999999999999997
Q ss_pred cCC
Q 029462 99 ENR 101 (193)
Q Consensus 99 ~~~ 101 (193)
++.
T Consensus 180 ~~~ 182 (213)
T 4f02_A 180 SRK 182 (213)
T ss_dssp CHH
T ss_pred CCc
Confidence 653
No 167
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.77 E-value=1.6e-18 Score=121.65 Aligned_cols=77 Identities=26% Similarity=0.372 Sum_probs=70.1
Q ss_pred ccCccEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEEE
Q 029462 17 VEEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 96 (193)
Q Consensus 17 ~~~~~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l~v~~ 96 (193)
....++|||+|| ++++++|+++|++||.|..|.|. ..+|||||+|.+.++|++||..|||..|+|+.|.|++
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~ 107 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 107 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 455678999996 69999999999999999999886 4489999999999999999999999999999999999
Q ss_pred eecCC
Q 029462 97 AEENR 101 (193)
Q Consensus 97 a~~~~ 101 (193)
+.+..
T Consensus 108 a~~~~ 112 (121)
T 2bz2_A 108 ARKQP 112 (121)
T ss_dssp CCSSC
T ss_pred eCCCC
Confidence 97664
No 168
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.77 E-value=2.6e-18 Score=131.02 Aligned_cols=78 Identities=14% Similarity=0.278 Sum_probs=71.9
Q ss_pred CccEEEEeCCC-CCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEe
Q 029462 19 EISRLVFWFAT-FAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 97 (193)
Q Consensus 19 ~~~rl~V~nl~-~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l~v~~a 97 (193)
+.++|||+||+ +.+++++|+++|++||.|..|.|+.+. +|||||+|.+.++|+.||..|||..|.|+.|.|.++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK-----PGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS-----TTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 45789999999 899999999999999999999998653 799999999999999999999999999999999998
Q ss_pred ecCC
Q 029462 98 EENR 101 (193)
Q Consensus 98 ~~~~ 101 (193)
+...
T Consensus 78 ~~~~ 81 (205)
T 3tyt_A 78 KQPA 81 (205)
T ss_dssp SCSC
T ss_pred cCCc
Confidence 7543
No 169
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=2.1e-18 Score=119.68 Aligned_cols=78 Identities=13% Similarity=0.158 Sum_probs=67.6
Q ss_pred cCccEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCC---CCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEE
Q 029462 18 EEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYT---GEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 94 (193)
Q Consensus 18 ~~~~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~---g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l~v 94 (193)
...++|||+|||+++++++|+++|++||.|. +.++.+..+ |.++|||||+|.+.++|++||..|+ .++|+.|.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEe
Confidence 3457799999999999999999999999999 888888777 7999999999999999999999984 367777766
Q ss_pred EEee
Q 029462 95 VFAE 98 (193)
Q Consensus 95 ~~a~ 98 (193)
..+.
T Consensus 83 ~~~~ 86 (114)
T 2dnl_A 83 VSSP 86 (114)
T ss_dssp ECCS
T ss_pred ccCC
Confidence 6543
No 170
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.76 E-value=2.5e-18 Score=113.25 Aligned_cols=72 Identities=19% Similarity=0.365 Sum_probs=66.4
Q ss_pred cCccEEEEeCCCCCCCHHHHHHhhccC----C-------ceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCce
Q 029462 18 EEISRLVFWFATFAMIVEDLRGPFGQF----G-------RLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYL 86 (193)
Q Consensus 18 ~~~~rl~V~nl~~~~t~~~l~~~F~~~----G-------~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~ 86 (193)
.+..+|||+|||+++++++|+++|.+| | .|..|.+..+ +|||||+|.+.++|++|+ .|||..
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~ 76 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGII 76 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCE
Confidence 345789999999999999999999999 8 9999998854 899999999999999999 999999
Q ss_pred ecCcEEEEEE
Q 029462 87 LLGRELTVVF 96 (193)
Q Consensus 87 i~g~~l~v~~ 96 (193)
|+|+.|.|+.
T Consensus 77 ~~g~~l~V~r 86 (87)
T 2hzc_A 77 FQGQSLKIRR 86 (87)
T ss_dssp ETTEECEEEC
T ss_pred ECCeEEEEeC
Confidence 9999999873
No 171
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.76 E-value=7.9e-18 Score=115.14 Aligned_cols=82 Identities=10% Similarity=0.067 Sum_probs=71.9
Q ss_pred cCccEEEEeCCCC-----CCCHHHHHHhhccCCceEEEEEcCCCCC-CCcceEEEEEeCCHHHHHHHHHHhCCceecCcE
Q 029462 18 EEISRLVFWFATF-----AMIVEDLRGPFGQFGRLKDIYLPRDYYT-GEPRGFGFVQYIDPADAADAKYHMDGYLLLGRE 91 (193)
Q Consensus 18 ~~~~rl~V~nl~~-----~~t~~~l~~~F~~~G~i~~v~i~~~~~~-g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~ 91 (193)
.++..|+|.||.. +.++++|+++|++||.|..|.|+.++.+ +.++|||||+|.+.++|++|+..|||..|+|+.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 3456799999963 2368999999999999999999987654 688999999999999999999999999999999
Q ss_pred EEEEEeec
Q 029462 92 LTVVFAEE 99 (193)
Q Consensus 92 l~v~~a~~ 99 (193)
|.|.++..
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99999865
No 172
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.75 E-value=6.1e-18 Score=123.95 Aligned_cols=79 Identities=27% Similarity=0.419 Sum_probs=74.9
Q ss_pred CccEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecC--cEEEEEE
Q 029462 19 EISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLG--RELTVVF 96 (193)
Q Consensus 19 ~~~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g--~~l~v~~ 96 (193)
...+|||+|||..+++++|+++|++||.|..|.|+.+..+|.++|||||+|.+.++|++|+..|||..|.| ++|.|.|
T Consensus 88 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~ 167 (168)
T 1b7f_A 88 KDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRL 167 (168)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEE
T ss_pred CCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEe
Confidence 45679999999999999999999999999999999998899999999999999999999999999999988 9999998
Q ss_pred e
Q 029462 97 A 97 (193)
Q Consensus 97 a 97 (193)
|
T Consensus 168 A 168 (168)
T 1b7f_A 168 A 168 (168)
T ss_dssp C
T ss_pred C
Confidence 6
No 173
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.75 E-value=7.5e-18 Score=123.04 Aligned_cols=80 Identities=19% Similarity=0.189 Sum_probs=73.8
Q ss_pred cEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEeecC
Q 029462 21 SRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEEN 100 (193)
Q Consensus 21 ~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l~v~~a~~~ 100 (193)
.+|||+|||.++++++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|+.|+..|||..|.|+.|.|.++...
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 369999999999999999999999999999999886 5778999999999999999999999999999999999998655
Q ss_pred C
Q 029462 101 R 101 (193)
Q Consensus 101 ~ 101 (193)
.
T Consensus 80 ~ 80 (166)
T 3md3_A 80 Q 80 (166)
T ss_dssp C
T ss_pred C
Confidence 4
No 174
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.74 E-value=9.6e-18 Score=122.57 Aligned_cols=79 Identities=28% Similarity=0.370 Sum_probs=73.8
Q ss_pred CccEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcE--EEEEE
Q 029462 19 EISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRE--LTVVF 96 (193)
Q Consensus 19 ~~~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~--l~v~~ 96 (193)
...+|||+|||..+++++|+++|++||.|..|.++.+..+|.++|||||+|.+.++|++|+..|||..|.|+. |.|.|
T Consensus 87 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~ 166 (167)
T 1fxl_A 87 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKF 166 (167)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEE
T ss_pred CCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEe
Confidence 4467999999999999999999999999999999998889999999999999999999999999999999965 88887
Q ss_pred e
Q 029462 97 A 97 (193)
Q Consensus 97 a 97 (193)
|
T Consensus 167 A 167 (167)
T 1fxl_A 167 A 167 (167)
T ss_dssp C
T ss_pred C
Confidence 5
No 175
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2.8e-18 Score=113.49 Aligned_cols=77 Identities=25% Similarity=0.364 Sum_probs=65.0
Q ss_pred cCccEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEe
Q 029462 18 EEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 97 (193)
Q Consensus 18 ~~~~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l~v~~a 97 (193)
.+.++|||+|||+++++++|+++|++||.|..|.|+.+ ++|||||+|.+.++|++|+.. ...+.|..|.|.++
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a 75 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNA 75 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEec
Confidence 34578999999999999999999999999999999864 489999999999999764321 33468999999998
Q ss_pred ecCC
Q 029462 98 EENR 101 (193)
Q Consensus 98 ~~~~ 101 (193)
.++.
T Consensus 76 ~~~~ 79 (88)
T 1wf0_A 76 EPKH 79 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7654
No 176
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.74 E-value=1.7e-17 Score=122.30 Aligned_cols=79 Identities=25% Similarity=0.341 Sum_probs=72.8
Q ss_pred CccEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceec---CcEEEEE
Q 029462 19 EISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLL---GRELTVV 95 (193)
Q Consensus 19 ~~~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~---g~~l~v~ 95 (193)
...+|||+|||..+++++|+++|++||.|..|.|+.+. +|.++|||||+|.+.++|++||..|||..+. ++.|.|.
T Consensus 94 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~ 172 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVK 172 (175)
T ss_dssp GGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEE
T ss_pred CCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEE
Confidence 55679999999999999999999999999999998886 6899999999999999999999999998776 4899999
Q ss_pred Eee
Q 029462 96 FAE 98 (193)
Q Consensus 96 ~a~ 98 (193)
||.
T Consensus 173 ~ad 175 (175)
T 3nmr_A 173 FAD 175 (175)
T ss_dssp ECC
T ss_pred ecC
Confidence 973
No 177
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.73 E-value=5.8e-18 Score=131.44 Aligned_cols=80 Identities=26% Similarity=0.275 Sum_probs=70.3
Q ss_pred ccCccEEEEeCCCCCC---------CHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee
Q 029462 17 VEEISRLVFWFATFAM---------IVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLL 87 (193)
Q Consensus 17 ~~~~~rl~V~nl~~~~---------t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i 87 (193)
.....+|||+||+..+ ++++|+++|++||+|..|.|+.+ +|||||+|.+.++|+.|++.|+|..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 3455789999999998 79999999999999999999843 89999999999999999999999999
Q ss_pred ------------cCcEEEEEEeecCCC
Q 029462 88 ------------LGRELTVVFAEENRK 102 (193)
Q Consensus 88 ------------~g~~l~v~~a~~~~~ 102 (193)
.|+.|.|.||...+.
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC----
T ss_pred eccccccccccCCCCEEEEEEccCCCC
Confidence 899999999986653
No 178
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.73 E-value=1.6e-17 Score=122.41 Aligned_cols=83 Identities=19% Similarity=0.304 Sum_probs=74.6
Q ss_pred CccEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCC--CcceEEEEEeCCHHHHHHHHHHhCCceec---CcEEE
Q 029462 19 EISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTG--EPRGFGFVQYIDPADAADAKYHMDGYLLL---GRELT 93 (193)
Q Consensus 19 ~~~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g--~~~g~afV~f~~~~~a~~Ai~~l~g~~i~---g~~l~ 93 (193)
+..+|||+|||+++++++|+++|.+||.|..|.|+.++.++ .++|||||+|.+.++|++|+..||+..+. +..|.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 34679999999999999999999999999999999998776 88999999999999999999999998876 67788
Q ss_pred EEEeecCC
Q 029462 94 VVFAEENR 101 (193)
Q Consensus 94 v~~a~~~~ 101 (193)
|.++....
T Consensus 82 ~~~~~~~~ 89 (175)
T 3nmr_A 82 MKPADSEK 89 (175)
T ss_dssp EEECGGGC
T ss_pred Eccccccc
Confidence 88776544
No 179
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.73 E-value=1.8e-17 Score=122.47 Aligned_cols=77 Identities=17% Similarity=0.330 Sum_probs=71.0
Q ss_pred CccEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEee
Q 029462 19 EISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAE 98 (193)
Q Consensus 19 ~~~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l~v~~a~ 98 (193)
...+|||+|||..+++++|+++|++||.|..+ ..++.++|||||+|.+.++|++||..|||..|+|+.|.|.||.
T Consensus 98 ~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 172 (175)
T 1fje_B 98 AARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 172 (175)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECS
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecC
Confidence 45689999999999999999999999998766 4578889999999999999999999999999999999999997
Q ss_pred cC
Q 029462 99 EN 100 (193)
Q Consensus 99 ~~ 100 (193)
++
T Consensus 173 ~k 174 (175)
T 1fje_B 173 EK 174 (175)
T ss_dssp SC
T ss_pred CC
Confidence 64
No 180
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.72 E-value=1.3e-17 Score=122.15 Aligned_cols=79 Identities=24% Similarity=0.431 Sum_probs=73.1
Q ss_pred CccEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEee
Q 029462 19 EISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAE 98 (193)
Q Consensus 19 ~~~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l~v~~a~ 98 (193)
+.++|||+|||.++++++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|++||. ++..|+|+.|.|.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK--TQHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHH--SCCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHh--cccccCCeEccccccc
Confidence 45789999999999999999999999999999999998899999999999999999999997 4678999999998875
Q ss_pred c
Q 029462 99 E 99 (193)
Q Consensus 99 ~ 99 (193)
+
T Consensus 80 ~ 80 (167)
T 2cjk_A 80 P 80 (167)
T ss_dssp C
T ss_pred c
Confidence 4
No 181
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.72 E-value=1.3e-17 Score=125.97 Aligned_cols=80 Identities=14% Similarity=0.130 Sum_probs=72.0
Q ss_pred CccEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEee
Q 029462 19 EISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAE 98 (193)
Q Consensus 19 ~~~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l~v~~a~ 98 (193)
...+|||+|||+++++++|+++|++||.|..|.|+.+. +|.++|||||+|.+.++|++||..+ +..|+|+.|.|.++.
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~ 185 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKD 185 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhH
Confidence 34679999999999999999999999999999998876 5889999999999999999999765 569999999999876
Q ss_pred cC
Q 029462 99 EN 100 (193)
Q Consensus 99 ~~ 100 (193)
.-
T Consensus 186 ~y 187 (193)
T 2voo_A 186 DY 187 (193)
T ss_dssp TC
T ss_pred HH
Confidence 43
No 182
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.72 E-value=3.6e-17 Score=129.84 Aligned_cols=82 Identities=21% Similarity=0.384 Sum_probs=74.7
Q ss_pred ccCccEEEEeCCCCCCCHHHHH----HhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEE
Q 029462 17 VEEISRLVFWFATFAMIVEDLR----GPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGREL 92 (193)
Q Consensus 17 ~~~~~rl~V~nl~~~~t~~~l~----~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l 92 (193)
....++|||+|||+++++++|+ ++|.+||.|..|.|+. +|+.+|||||+|.+.++|++||..|||..|.|+.|
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 82 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 82 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEE
Confidence 3456789999999999999966 8999999999999875 67889999999999999999999999999999999
Q ss_pred EEEEeecCC
Q 029462 93 TVVFAEENR 101 (193)
Q Consensus 93 ~v~~a~~~~ 101 (193)
.|+++....
T Consensus 83 ~v~~a~~~~ 91 (282)
T 3pgw_A 83 RIQYAKTDS 91 (282)
T ss_pred EEEEeccCc
Confidence 999996554
No 183
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.71 E-value=5.8e-17 Score=128.64 Aligned_cols=76 Identities=18% Similarity=0.229 Sum_probs=70.5
Q ss_pred cCccEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceec-CcEEEEEE
Q 029462 18 EEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLL-GRELTVVF 96 (193)
Q Consensus 18 ~~~~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~-g~~l~v~~ 96 (193)
....+|||+|||..+++++|+++|++||.|..|.|+.+. +|||||+|.+.++|++||..|||..|+ |+.|.|+|
T Consensus 205 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 279 (282)
T 3pgw_A 205 PPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISF 279 (282)
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEE
Confidence 345679999999999999999999999999999998653 689999999999999999999999999 99999999
Q ss_pred ee
Q 029462 97 AE 98 (193)
Q Consensus 97 a~ 98 (193)
++
T Consensus 280 ak 281 (282)
T 3pgw_A 280 AK 281 (282)
T ss_pred ec
Confidence 85
No 184
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.71 E-value=3.1e-17 Score=130.81 Aligned_cols=83 Identities=22% Similarity=0.280 Sum_probs=75.7
Q ss_pred ccCccEEEEeCCCCC-CCHHHHHHhhccCCceEEEEEcCCCC-CCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEE
Q 029462 17 VEEISRLVFWFATFA-MIVEDLRGPFGQFGRLKDIYLPRDYY-TGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 94 (193)
Q Consensus 17 ~~~~~rl~V~nl~~~-~t~~~l~~~F~~~G~i~~v~i~~~~~-~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l~v 94 (193)
.....+|||+|||.. +++++|+++|++||.|..|.|+.+.. ||.++|||||+|.+.++|++|| .|||..|+|+.|.|
T Consensus 207 ~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V 285 (292)
T 2ghp_A 207 TLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISV 285 (292)
T ss_dssp CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEE
T ss_pred CCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEE
Confidence 345578999999999 99999999999999999999998876 6999999999999999999999 99999999999999
Q ss_pred EEeecC
Q 029462 95 VFAEEN 100 (193)
Q Consensus 95 ~~a~~~ 100 (193)
.||.++
T Consensus 286 ~~a~~k 291 (292)
T 2ghp_A 286 SLADKK 291 (292)
T ss_dssp EECCCC
T ss_pred EEecCC
Confidence 999765
No 185
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.70 E-value=4.5e-17 Score=125.93 Aligned_cols=79 Identities=19% Similarity=0.231 Sum_probs=73.2
Q ss_pred cCccEEEEeCCCC-CCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEEE
Q 029462 18 EEISRLVFWFATF-AMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 96 (193)
Q Consensus 18 ~~~~rl~V~nl~~-~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l~v~~ 96 (193)
.+.++|||+|||+ .+++++|+++|++||.|..|.|+.++ +|||||+|.+.++|++||..|||..|.|+.|.|++
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~ 106 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITL 106 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEEC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 4567899999999 99999999999999999999999765 79999999999999999999999999999999999
Q ss_pred eecCC
Q 029462 97 AEENR 101 (193)
Q Consensus 97 a~~~~ 101 (193)
+....
T Consensus 107 a~~~~ 111 (229)
T 2adc_A 107 SKHQN 111 (229)
T ss_dssp CSCCC
T ss_pred ecCcc
Confidence 87653
No 186
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.69 E-value=1.3e-16 Score=126.77 Aligned_cols=84 Identities=20% Similarity=0.182 Sum_probs=77.5
Q ss_pred cCccEEEEeCCCCCC-CHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEEE
Q 029462 18 EEISRLVFWFATFAM-IVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 96 (193)
Q Consensus 18 ~~~~rl~V~nl~~~~-t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l~v~~ 96 (193)
....+|||+|||..+ ++++|+++|+.||.|..|.|+.+. +|.++|||||+|.+.++|++|+..|||..|+|+.|.|.+
T Consensus 182 ~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 260 (284)
T 3smz_A 182 LHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSF 260 (284)
T ss_dssp TSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEE
Confidence 455779999999995 999999999999999999998876 789999999999999999999999999999999999999
Q ss_pred eecCCC
Q 029462 97 AEENRK 102 (193)
Q Consensus 97 a~~~~~ 102 (193)
+.++..
T Consensus 261 a~~~~~ 266 (284)
T 3smz_A 261 CAPGPP 266 (284)
T ss_dssp CCSSSC
T ss_pred ecCCCc
Confidence 977653
No 187
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.69 E-value=1.7e-16 Score=126.12 Aligned_cols=84 Identities=24% Similarity=0.336 Sum_probs=79.1
Q ss_pred cCccEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEe
Q 029462 18 EEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 97 (193)
Q Consensus 18 ~~~~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l~v~~a 97 (193)
....+|||+|||..+++++|.++|.+||.|..|.|+.+..+|.++|||||+|.+.++|+.|+..|||..|+|+.|.|.++
T Consensus 93 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a 172 (284)
T 3smz_A 93 PTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWT 172 (284)
T ss_dssp CCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 34567999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred ecCC
Q 029462 98 EENR 101 (193)
Q Consensus 98 ~~~~ 101 (193)
.+..
T Consensus 173 ~~~~ 176 (284)
T 3smz_A 173 DAGQ 176 (284)
T ss_dssp CGGG
T ss_pred CCCC
Confidence 7654
No 188
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=2e-16 Score=109.27 Aligned_cols=80 Identities=25% Similarity=0.353 Sum_probs=68.1
Q ss_pred cCccEEEEeCCCCCCC-----------HHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCce
Q 029462 18 EEISRLVFWFATFAMI-----------VEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYL 86 (193)
Q Consensus 18 ~~~~rl~V~nl~~~~t-----------~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~ 86 (193)
..+..|+|.||..... +++|+++|++||.|..|.| .++ .++|||||+|.+.++|++||..|||..
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng~~ 88 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDGRW 88 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTTCE
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCCCE
Confidence 4456799999944332 5799999999999999966 343 369999999999999999999999999
Q ss_pred ecCcEEEEEEeecCC
Q 029462 87 LLGRELTVVFAEENR 101 (193)
Q Consensus 87 i~g~~l~v~~a~~~~ 101 (193)
|+|+.|.|+++.+..
T Consensus 89 ~~gr~l~v~~a~~~~ 103 (112)
T 2dit_A 89 FGGRQITAQAWDGTT 103 (112)
T ss_dssp ETTEECEEEECCSCC
T ss_pred ECCcEEEEEEeCCCC
Confidence 999999999997654
No 189
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.68 E-value=3.4e-16 Score=120.97 Aligned_cols=78 Identities=19% Similarity=0.175 Sum_probs=71.2
Q ss_pred cCccEEEEeCCCCCCCHHHHHHhhccCC-ceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceec-CcEEEEE
Q 029462 18 EEISRLVFWFATFAMIVEDLRGPFGQFG-RLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLL-GRELTVV 95 (193)
Q Consensus 18 ~~~~rl~V~nl~~~~t~~~l~~~F~~~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~-g~~l~v~ 95 (193)
.+..+|||+|||..+++++|+++|.+|| .|..|.|+.+ .+|||||+|.+.++|++||..|||..|. |+.|.|.
T Consensus 149 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~ 223 (229)
T 2adc_A 149 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 223 (229)
T ss_dssp CSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEE
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEE
Confidence 4467899999999999999999999999 9999999643 2789999999999999999999999999 9999999
Q ss_pred EeecC
Q 029462 96 FAEEN 100 (193)
Q Consensus 96 ~a~~~ 100 (193)
|+++.
T Consensus 224 ~a~~~ 228 (229)
T 2adc_A 224 FSKST 228 (229)
T ss_dssp ECSSC
T ss_pred EecCC
Confidence 98753
No 190
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.68 E-value=7.3e-17 Score=121.66 Aligned_cols=77 Identities=19% Similarity=0.240 Sum_probs=72.0
Q ss_pred ccEEEEeCCCC-CCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEee
Q 029462 20 ISRLVFWFATF-AMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAE 98 (193)
Q Consensus 20 ~~rl~V~nl~~-~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l~v~~a~ 98 (193)
.++|||+|||+ .+++++|+++|++||.|..|.|+.++ +|||||+|.+.++|+.||..|||..|.|+.|.|.++.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 77 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 77 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEec
Confidence 46899999999 99999999999999999999998765 7899999999999999999999999999999999987
Q ss_pred cCC
Q 029462 99 ENR 101 (193)
Q Consensus 99 ~~~ 101 (193)
...
T Consensus 78 ~~~ 80 (198)
T 1qm9_A 78 HQN 80 (198)
T ss_dssp CCS
T ss_pred CCC
Confidence 654
No 191
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.67 E-value=2.3e-16 Score=107.80 Aligned_cols=82 Identities=21% Similarity=0.294 Sum_probs=70.0
Q ss_pred CccEEEEeCC--CCCCC--------HHHHHHhhccCCceEEEEEcCCCCC--CCcceEEEEEeCCHHHHHHHHHHhCCce
Q 029462 19 EISRLVFWFA--TFAMI--------VEDLRGPFGQFGRLKDIYLPRDYYT--GEPRGFGFVQYIDPADAADAKYHMDGYL 86 (193)
Q Consensus 19 ~~~rl~V~nl--~~~~t--------~~~l~~~F~~~G~i~~v~i~~~~~~--g~~~g~afV~f~~~~~a~~Ai~~l~g~~ 86 (193)
++..|+|.|+ +.++. +++|+++|++||.|..|.|+.+..+ +.++|||||+|.+.++|++|+..|||..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 4566889988 33443 3689999999999999999988754 3678999999999999999999999999
Q ss_pred ecCcEEEEEEeecC
Q 029462 87 LLGRELTVVFAEEN 100 (193)
Q Consensus 87 i~g~~l~v~~a~~~ 100 (193)
|+|+.|.|.++...
T Consensus 84 f~GR~i~v~~~~~~ 97 (105)
T 3v4m_A 84 FANRVVVTKYCDPD 97 (105)
T ss_dssp ETTEECEEEEECHH
T ss_pred eCCCEEEEEEeCHH
Confidence 99999999998543
No 192
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.67 E-value=2.2e-16 Score=124.42 Aligned_cols=77 Identities=30% Similarity=0.496 Sum_probs=71.3
Q ss_pred ccCccEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEEE
Q 029462 17 VEEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 96 (193)
Q Consensus 17 ~~~~~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l~v~~ 96 (193)
....++|||+|||+++|+++|.++|.+||.|..|.|..+ +|||||+|.+.++|+.||..|||..|.|+.|.|.+
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 92 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRF 92 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCceeEeee
Confidence 455678999999999999999999999999999999743 79999999999999999999999999999999999
Q ss_pred eec
Q 029462 97 AEE 99 (193)
Q Consensus 97 a~~ 99 (193)
+.+
T Consensus 93 a~~ 95 (261)
T 3sde_A 93 ATH 95 (261)
T ss_dssp CCC
T ss_pred ccc
Confidence 864
No 193
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.67 E-value=2.6e-17 Score=121.64 Aligned_cols=83 Identities=19% Similarity=0.232 Sum_probs=72.2
Q ss_pred ccCccEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEEE
Q 029462 17 VEEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 96 (193)
Q Consensus 17 ~~~~~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l~v~~ 96 (193)
..+..+|||+|||.++++++|+++|.+||.|.. .++.+..+|.++|||||+|.+.++|++|| .|||..|.|+.|.|.+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v~~ 87 (175)
T 1fje_B 10 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLEK 87 (175)
T ss_dssp CSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEEec
Confidence 345578999999999999999999999998766 33445567888999999999999999999 5999999999999999
Q ss_pred eecCC
Q 029462 97 AEENR 101 (193)
Q Consensus 97 a~~~~ 101 (193)
+....
T Consensus 88 ~~~~~ 92 (175)
T 1fje_B 88 PKGRD 92 (175)
T ss_dssp CCCSS
T ss_pred CCCcc
Confidence 87654
No 194
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.67 E-value=2e-16 Score=119.28 Aligned_cols=78 Identities=19% Similarity=0.166 Sum_probs=71.3
Q ss_pred cCccEEEEeCCCCCCCHHHHHHhhccCC-ceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceec-CcEEEEE
Q 029462 18 EEISRLVFWFATFAMIVEDLRGPFGQFG-RLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLL-GRELTVV 95 (193)
Q Consensus 18 ~~~~rl~V~nl~~~~t~~~l~~~F~~~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~-g~~l~v~ 95 (193)
.+..+|||+|||..+++++|+++|++|| .|..|.|+.+. +|||||+|.+.++|++|+..|||..|+ |+.|.|.
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 192 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD-----RKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 192 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT-----SSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC-----CcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEE
Confidence 3467899999999999999999999999 99999997532 799999999999999999999999999 9999999
Q ss_pred EeecC
Q 029462 96 FAEEN 100 (193)
Q Consensus 96 ~a~~~ 100 (193)
|+++.
T Consensus 193 ~a~~~ 197 (198)
T 1qm9_A 193 FSKST 197 (198)
T ss_dssp EECCC
T ss_pred eeccc
Confidence 98753
No 195
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.66 E-value=4.9e-17 Score=111.00 Aligned_cols=72 Identities=11% Similarity=0.184 Sum_probs=63.8
Q ss_pred EeCCCCCCCHHHHHHhh------------ccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEE
Q 029462 25 FWFATFAMIVEDLRGPF------------GQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGREL 92 (193)
Q Consensus 25 V~nl~~~~t~~~l~~~F------------~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l 92 (193)
+.||++.+++++|+++| ++||.|..|.|+.+. ++.++|||||+|.+.++|++|+..|||..|+|+.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 56777777877777666 999999999999876 47889999999999999999999999999999999
Q ss_pred EEEEe
Q 029462 93 TVVFA 97 (193)
Q Consensus 93 ~v~~a 97 (193)
.|+++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99986
No 196
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.66 E-value=1.9e-16 Score=120.73 Aligned_cols=78 Identities=14% Similarity=0.197 Sum_probs=68.4
Q ss_pred cCccEEEEeCCCCCCCHHHHHHhhccCCce--EEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCc----E
Q 029462 18 EEISRLVFWFATFAMIVEDLRGPFGQFGRL--KDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGR----E 91 (193)
Q Consensus 18 ~~~~rl~V~nl~~~~t~~~l~~~F~~~G~i--~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~----~ 91 (193)
.+..+|||+|||+.+++++|+++|++||.| ..|.|+.+. +..+|||||+|.+.++|++||..|||..|.|. +
T Consensus 121 ~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p 198 (205)
T 3tyt_A 121 HPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYP 198 (205)
T ss_dssp CCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSC
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcc
Confidence 345679999999999999999999999999 889888764 45579999999999999999999999999886 5
Q ss_pred EEEEEe
Q 029462 92 LTVVFA 97 (193)
Q Consensus 92 l~v~~a 97 (193)
+.|++|
T Consensus 199 ~~vk~~ 204 (205)
T 3tyt_A 199 YTLKLC 204 (205)
T ss_dssp EECEEE
T ss_pred eEEEec
Confidence 666665
No 197
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.65 E-value=6e-16 Score=107.87 Aligned_cols=81 Identities=15% Similarity=0.239 Sum_probs=70.3
Q ss_pred CccEEEEeCCC--CCC---CHHHHHHhhccCCceEEEEEcCCCC----CCCcceEEEEEeCCHHHHHHHHHHhCCceecC
Q 029462 19 EISRLVFWFAT--FAM---IVEDLRGPFGQFGRLKDIYLPRDYY----TGEPRGFGFVQYIDPADAADAKYHMDGYLLLG 89 (193)
Q Consensus 19 ~~~rl~V~nl~--~~~---t~~~l~~~F~~~G~i~~v~i~~~~~----~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g 89 (193)
++..|+|.|+- .++ .+++|+++|++||.|..|.|+.+.. ++.++|||||+|.+.++|++|+..|||..|+|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 56779999983 222 3689999999999999999998754 45678999999999999999999999999999
Q ss_pred cEEEEEEeec
Q 029462 90 RELTVVFAEE 99 (193)
Q Consensus 90 ~~l~v~~a~~ 99 (193)
+.|.|.++..
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999999854
No 198
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.63 E-value=6.7e-16 Score=123.09 Aligned_cols=84 Identities=15% Similarity=0.165 Sum_probs=71.1
Q ss_pred cCccEEEEeCCCCCCCHHHHHHhhccCC-ceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEEE
Q 029462 18 EEISRLVFWFATFAMIVEDLRGPFGQFG-RLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 96 (193)
Q Consensus 18 ~~~~rl~V~nl~~~~t~~~l~~~F~~~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l~v~~ 96 (193)
....+|||+|||..+++++|.++|.+|| .|..|.|+.+.. |.++|||||+|.+.++|+.||..|||..|.|+.|.|.+
T Consensus 115 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 193 (292)
T 2ghp_A 115 LTECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKV 193 (292)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 3567899999999999999999999999 999999988764 77899999999999999999999999999999999999
Q ss_pred eecCCC
Q 029462 97 AEENRK 102 (193)
Q Consensus 97 a~~~~~ 102 (193)
+.+...
T Consensus 194 a~~~~~ 199 (292)
T 2ghp_A 194 SNPLEK 199 (292)
T ss_dssp CCCC--
T ss_pred CCCCcc
Confidence 876543
No 199
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.63 E-value=9.1e-16 Score=112.77 Aligned_cols=75 Identities=17% Similarity=0.339 Sum_probs=67.5
Q ss_pred CccEEEEeCCCCCCCHHHHHHhhccC----C-------ceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee
Q 029462 19 EISRLVFWFATFAMIVEDLRGPFGQF----G-------RLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLL 87 (193)
Q Consensus 19 ~~~rl~V~nl~~~~t~~~l~~~F~~~----G-------~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i 87 (193)
+.++|||+|||+++++++|+++|++| | .|..+.+.. .+|||||+|.+.++|++|| .|||..|
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~------~~g~afV~f~~~~~A~~A~-~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ------DKNFAFLEFRSVDETTQAM-AFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET------TTTEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC------CCCEEEEEeCCHHHHHHHH-HhCCcEe
Confidence 45789999999999999999999999 6 777777764 3899999999999999999 8999999
Q ss_pred cCcEEEEEEeecC
Q 029462 88 LGRELTVVFAEEN 100 (193)
Q Consensus 88 ~g~~l~v~~a~~~ 100 (193)
.|+.|.|.++...
T Consensus 76 ~g~~i~v~~~~~~ 88 (172)
T 2g4b_A 76 QGQSLKIRRPHDY 88 (172)
T ss_dssp TTEECEEECCSSC
T ss_pred cCceeeecCCccc
Confidence 9999999987654
No 200
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.63 E-value=1.3e-15 Score=120.03 Aligned_cols=83 Identities=24% Similarity=0.234 Sum_probs=74.0
Q ss_pred cCccEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCC-ceec---CcEEE
Q 029462 18 EEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDG-YLLL---GRELT 93 (193)
Q Consensus 18 ~~~~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g-~~i~---g~~l~ 93 (193)
....+|||+|||..+++++|+++|.+||.|..|.|+.+ .+|.++|||||+|.+.++|.+||..||+ ..+. +++|.
T Consensus 94 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~ 172 (261)
T 3sde_A 94 THGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVI 172 (261)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCE
T ss_pred ccCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEE
Confidence 34568999999999999999999999999999999988 5899999999999999999999999955 4444 99999
Q ss_pred EEEeecCC
Q 029462 94 VVFAEENR 101 (193)
Q Consensus 94 v~~a~~~~ 101 (193)
|.++....
T Consensus 173 v~~~~~~~ 180 (261)
T 3sde_A 173 VEPMEQFD 180 (261)
T ss_dssp EEECCCEE
T ss_pred EeeccccC
Confidence 99987543
No 201
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.61 E-value=1.7e-15 Score=113.75 Aligned_cols=76 Identities=17% Similarity=0.333 Sum_probs=66.6
Q ss_pred CccEEEEeCCCCCCCHHHHHHhhccC----C-------ceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee
Q 029462 19 EISRLVFWFATFAMIVEDLRGPFGQF----G-------RLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLL 87 (193)
Q Consensus 19 ~~~rl~V~nl~~~~t~~~l~~~F~~~----G-------~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i 87 (193)
..++|||+|||+++++++|.++|.+| | .|..+.+. ..+|||||+|.+.++|++|| .|||..|
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~------~~~g~afV~F~~~~~A~~Al-~l~g~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEE------TTTTEEEEEESCSHHHHHHG-GGTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEec------CCCCEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 35789999999999999999999999 5 66666664 44899999999999999999 8999999
Q ss_pred cCcEEEEEEeecCC
Q 029462 88 LGRELTVVFAEENR 101 (193)
Q Consensus 88 ~g~~l~v~~a~~~~ 101 (193)
.|+.|.|.++....
T Consensus 76 ~g~~i~v~~~~~~~ 89 (198)
T 2yh0_A 76 QGQSLKIRRPHDYQ 89 (198)
T ss_dssp TTEEEEEECCCCCC
T ss_pred cCceEEEeCCCCCC
Confidence 99999999986543
No 202
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.61 E-value=2.1e-15 Score=122.87 Aligned_cols=76 Identities=17% Similarity=0.277 Sum_probs=65.7
Q ss_pred ccCccEEEEeC--CCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceec---Cc-
Q 029462 17 VEEISRLVFWF--ATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLL---GR- 90 (193)
Q Consensus 17 ~~~~~rl~V~n--l~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~---g~- 90 (193)
..++..|||+| |++.+++++|+++|++||+|..|.|.. .+|||||+|.+.++|++||+.|||.++. |+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~ 88 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 88 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCCc
Confidence 56677899999 578999999999999999999987763 3799999999999999999999999873 44
Q ss_pred -EEEEEEee
Q 029462 91 -ELTVVFAE 98 (193)
Q Consensus 91 -~l~v~~a~ 98 (193)
.|.|.++.
T Consensus 89 ~~ly~~~~~ 97 (345)
T 3tht_A 89 ITLYLNFVE 97 (345)
T ss_dssp EECEEEECS
T ss_pred eEEEEEEee
Confidence 57777764
No 203
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=5.7e-15 Score=99.91 Aligned_cols=76 Identities=16% Similarity=0.215 Sum_probs=62.8
Q ss_pred ccEEEEeCCC-------CCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEE
Q 029462 20 ISRLVFWFAT-------FAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGREL 92 (193)
Q Consensus 20 ~~rl~V~nl~-------~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l 92 (193)
..+|.|.-.. ..+++++|+++|++||.|..|.|+. .++|||||+|.+.++|+.||..+++ +.|+.|
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~~-----~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l 82 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSS-----KKPGTAVVEFATVKAAELAVQNEVG--LVDNPL 82 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEES-----SSSSEEEEEESCHHHHHHHHHTCCB--CSSSBC
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEcc-----CCCCEEEEEECCHHHHHHHHHhcCC--CCCCeE
Confidence 3456665433 4589999999999999999999873 5699999999999999999987544 679999
Q ss_pred EEEEeecCCC
Q 029462 93 TVVFAEENRK 102 (193)
Q Consensus 93 ~v~~a~~~~~ 102 (193)
.|+|+.+...
T Consensus 83 ~V~~a~~~~~ 92 (100)
T 2d9o_A 83 KISWLEGQPQ 92 (100)
T ss_dssp EEECSSCCCC
T ss_pred EEEEccCCCC
Confidence 9999876653
No 204
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.54 E-value=4.4e-14 Score=97.77 Aligned_cols=77 Identities=17% Similarity=0.213 Sum_probs=64.1
Q ss_pred CccEEEEeCCCCCC----------CHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceec
Q 029462 19 EISRLVFWFATFAM----------IVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLL 88 (193)
Q Consensus 19 ~~~rl~V~nl~~~~----------t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~ 88 (193)
++..|.+.|+-... .+++|+++|++||.|..|.|..+. .+|||||+|.+.++|++|+..|||..|+
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f~ 81 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWFA 81 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 34568888873211 135789999999999999997652 4899999999999999999999999999
Q ss_pred CcEEEEEEeec
Q 029462 89 GRELTVVFAEE 99 (193)
Q Consensus 89 g~~l~v~~a~~ 99 (193)
|+.|.|+++..
T Consensus 82 GR~i~v~~~~~ 92 (114)
T 3s6e_A 82 GKMITAAYVPL 92 (114)
T ss_dssp TEECEEEEECH
T ss_pred CEEEEEEEEcH
Confidence 99999999854
No 205
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=6.6e-13 Score=92.28 Aligned_cols=76 Identities=21% Similarity=0.129 Sum_probs=67.5
Q ss_pred ccCccEEEEeCCCCC-CCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCC-HHHHHHHHHHhC--CceecCcEE
Q 029462 17 VEEISRLVFWFATFA-MIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYID-PADAADAKYHMD--GYLLLGREL 92 (193)
Q Consensus 17 ~~~~~rl~V~nl~~~-~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~-~~~a~~Ai~~l~--g~~i~g~~l 92 (193)
+...+.|+|+||+.. +++++|+++|++||+|..|.++.+. ..|||.|.+ .++|++|+..|| +.+|+|..+
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~------~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~ 88 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGA------KEGIILFKEKAKEALGKAKDANNGNLQLRNKEV 88 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTC------SEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSE
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCC------CEEEEEECCChHHHHHHHHHhhcCCcEEeCcEE
Confidence 456677999999999 9999999999999999999998764 369999999 899999999995 778999999
Q ss_pred EEEEee
Q 029462 93 TVVFAE 98 (193)
Q Consensus 93 ~v~~a~ 98 (193)
++++..
T Consensus 89 ~~evL~ 94 (121)
T 1owx_A 89 TWEVLE 94 (121)
T ss_dssp EEEECC
T ss_pred EEEECC
Confidence 998764
No 206
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.37 E-value=2.5e-12 Score=84.28 Aligned_cols=58 Identities=22% Similarity=0.407 Sum_probs=53.0
Q ss_pred HHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEeecCC
Q 029462 35 EDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEENR 101 (193)
Q Consensus 35 ~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l~v~~a~~~~ 101 (193)
.+|.+.|.+||+|..+.|+.+ .+||+|.+.+.|.+||. |||..|+|+.|+|+++.+..
T Consensus 30 ~~L~~~F~~~G~Vi~vr~~~d--------~~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV~lkt~dW 87 (91)
T 2dnr_A 30 DELLQQFASFGEVILIRFVED--------KMWVTFLEGSSALNVLS-LNGKELLNRTITIALKSPSG 87 (91)
T ss_dssp HHHHHHHHTTCCEEEEEECSS--------SEEEEESSHHHHHHGGG-GTTCEETTEEEEEEECCCSS
T ss_pred HHHHHHHHhCCCeEEEEEecC--------CEEEEECChHHHHHHHh-cCCeEeCCeEEEEEeCCCCc
Confidence 578999999999999999965 38999999999999998 99999999999999998665
No 207
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.22 E-value=4e-11 Score=91.96 Aligned_cols=67 Identities=15% Similarity=0.269 Sum_probs=60.0
Q ss_pred CHHHHHHhhccCCceEEEEEcCCC----CCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEeec
Q 029462 33 IVEDLRGPFGQFGRLKDIYLPRDY----YTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEE 99 (193)
Q Consensus 33 t~~~l~~~F~~~G~i~~v~i~~~~----~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l~v~~a~~ 99 (193)
.+++|.+.|.+||.|..|.|+.+. .++.++|++||+|.+.++|++||..|||..++|+.|.|.++..
T Consensus 142 ~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 142 LEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp HHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred HHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 467899999999999999998443 4568899999999999999999999999999999999999754
No 208
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.17 E-value=2.4e-11 Score=79.98 Aligned_cols=69 Identities=16% Similarity=0.239 Sum_probs=57.3
Q ss_pred ccEEEEeCCCCC-----CCH----HHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCc
Q 029462 20 ISRLVFWFATFA-----MIV----EDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGR 90 (193)
Q Consensus 20 ~~rl~V~nl~~~-----~t~----~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~ 90 (193)
..+|+|.-++.. +.. .+|.+.|.+||+|..+.|+.+. +||+|.+.++|.+||. |||..|+|+
T Consensus 15 D~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v~Gr 85 (95)
T 1ufw_A 15 DATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKVKGR 85 (95)
T ss_dssp TCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEETTE
T ss_pred CCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeeeCCe
Confidence 356777776532 222 5688999999999999999662 9999999999999997 999999999
Q ss_pred EEEEEEe
Q 029462 91 ELTVVFA 97 (193)
Q Consensus 91 ~l~v~~a 97 (193)
.|+|.+.
T Consensus 86 ~L~V~~k 92 (95)
T 1ufw_A 86 AVKISGP 92 (95)
T ss_dssp EEEEECC
T ss_pred EEEEecc
Confidence 9999875
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.91 E-value=6.3e-09 Score=69.95 Aligned_cols=72 Identities=11% Similarity=0.047 Sum_probs=65.6
Q ss_pred ccEEEEeCCCCCCCHHHHHHhhccC-----CceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEE
Q 029462 20 ISRLVFWFATFAMIVEDLRGPFGQF-----GRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 94 (193)
Q Consensus 20 ~~rl~V~nl~~~~t~~~l~~~F~~~-----G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l~v 94 (193)
...|-+-|||..+++..|..+++.+ |.|..+.+..| -+-|+|+|.+...|-+|.-.|+|.+|.|++|++
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pD------H~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~ 94 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSD------FNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRS 94 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT------TTEEEEECSCHHHHHHHHHHHSSEEETTEEEEE
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecC------CCceEEEEccchhhHHHHhhcCCeeecCeEEEe
Confidence 4568899999999999999999999 99999999876 677999999999999999999999999999998
Q ss_pred EEe
Q 029462 95 VFA 97 (193)
Q Consensus 95 ~~a 97 (193)
.-.
T Consensus 95 gTv 97 (117)
T 2l9w_A 95 GTI 97 (117)
T ss_dssp ECH
T ss_pred cCH
Confidence 643
No 210
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.33 E-value=9.1e-07 Score=59.11 Aligned_cols=75 Identities=19% Similarity=0.253 Sum_probs=62.8
Q ss_pred cEEEEeCCCCCC-C----HHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEE
Q 029462 21 SRLVFWFATFAM-I----VEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVV 95 (193)
Q Consensus 21 ~rl~V~nl~~~~-t----~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l~v~ 95 (193)
+.|+|+||+.++ . .+.++++|..|+++....+... -.=..|.|.+.++|.+|-..||+..+.|..|+|.
T Consensus 6 ntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS------FRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~Y 79 (104)
T 1wey_A 6 SGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS------FKRVRINFSNPLSAADARLRLHKTEFLGKEMKLY 79 (104)
T ss_dssp CEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT------TTEEEEECSSTTHHHHHHHTSTTSEETTEECEEE
T ss_pred ceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc------ceEEEEEeCChHHHHHHHHHhccceecCceeEEE
Confidence 569999998865 2 2567899999999888777643 3456899999999999999999999999999999
Q ss_pred EeecCC
Q 029462 96 FAEENR 101 (193)
Q Consensus 96 ~a~~~~ 101 (193)
++.+..
T Consensus 80 Fgq~~~ 85 (104)
T 1wey_A 80 FAQTLH 85 (104)
T ss_dssp CCCCSS
T ss_pred ecCCCC
Confidence 997543
No 211
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.18 E-value=1.3e-05 Score=53.27 Aligned_cols=69 Identities=20% Similarity=0.052 Sum_probs=57.7
Q ss_pred cEEEEeCCCCCCCHHHHHHhhccC-----CceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEE
Q 029462 21 SRLVFWFATFAMIVEDLRGPFGQF-----GRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVV 95 (193)
Q Consensus 21 ~rl~V~nl~~~~t~~~l~~~F~~~-----G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l~v~ 95 (193)
.+|.|.|||..+.++.|+-+|++- |+|..+... .+-|+|+|.+.+.|+..|.. ..+.|.+..|.|.
T Consensus 9 ~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~--------~~~AvItF~d~~va~rVL~k-~~H~L~~~~LsV~ 79 (104)
T 2dhx_A 9 VAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRL--------GCGGVLTFREPADAERVLAQ-ADHELHGAQLSLR 79 (104)
T ss_dssp CEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEE--------TTEEEEEESSHHHHHHHHTC-SCCBSSSSBCEEE
T ss_pred cEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEc--------CCcEEEEEcChHHHHHHhcC-CcceecCeEEEEE
Confidence 569999999999999999999972 688888775 36789999999999998853 4678999999986
Q ss_pred Eee
Q 029462 96 FAE 98 (193)
Q Consensus 96 ~a~ 98 (193)
...
T Consensus 80 P~~ 82 (104)
T 2dhx_A 80 PAP 82 (104)
T ss_dssp ECC
T ss_pred cCC
Confidence 643
No 212
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=98.13 E-value=2.8e-05 Score=50.89 Aligned_cols=79 Identities=15% Similarity=0.149 Sum_probs=60.7
Q ss_pred cEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCC--cceEEEEEeCCHHHHHHHHHHhCCceecC---c--EEE
Q 029462 21 SRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGE--PRGFGFVQYIDPADAADAKYHMDGYLLLG---R--ELT 93 (193)
Q Consensus 21 ~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~--~~g~afV~f~~~~~a~~Ai~~l~g~~i~g---~--~l~ 93 (193)
++|.|.+||+.+||+++.+.+..+..+.-...+..+.+.+ ...-|||.|.+.+++..-.+.++|+.+.+ . ...
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~ 81 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAI 81 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeE
Confidence 6799999999999999999999988776555544332222 24679999999999999999999998743 2 235
Q ss_pred EEEeec
Q 029462 94 VVFAEE 99 (193)
Q Consensus 94 v~~a~~ 99 (193)
|++|.-
T Consensus 82 VE~AP~ 87 (91)
T 1uw4_A 82 VEFAPF 87 (91)
T ss_dssp EEECSS
T ss_pred EEEcCC
Confidence 677643
No 213
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.92 E-value=7.2e-05 Score=51.24 Aligned_cols=71 Identities=14% Similarity=0.137 Sum_probs=56.1
Q ss_pred CccEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecC-cEEEEEEe
Q 029462 19 EISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLG-RELTVVFA 97 (193)
Q Consensus 19 ~~~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g-~~l~v~~a 97 (193)
...-|.|-++|+.. ...|...|++||.|...... ....+-.|.|.+..+|++||.. ||..|+| ..|-|...
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~------~~~NWihI~Y~s~~~A~rAL~k-NG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS------NTGNWMHIRYQSKLQARKALSK-DGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC------SSSSEEEEEESSHHHHHHHHTT-TTCEETTTEECEEEEC
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC------CCCCeEEEEeCCHHHHHHHHHh-CCeEecCCEEEEEEEC
Confidence 34558899999875 56677889999999988763 2267999999999999999954 9999985 55666654
No 214
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.78 E-value=8.7e-05 Score=48.95 Aligned_cols=79 Identities=15% Similarity=0.150 Sum_probs=55.8
Q ss_pred ccEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCC--cceEEEEEeCCHHHHHHHHHHhCCceecCc-----EE
Q 029462 20 ISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGE--PRGFGFVQYIDPADAADAKYHMDGYLLLGR-----EL 92 (193)
Q Consensus 20 ~~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~--~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~-----~l 92 (193)
.-+|.|..||+.+||+++.+.+..+-++.-...+....+.+ .-.-|||.|.+.+++..-.+.++|..+-+. ..
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~a 88 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPA 88 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEeee
Confidence 35699999999999999998888765543222222222211 224689999999999999999999986432 34
Q ss_pred EEEEee
Q 029462 93 TVVFAE 98 (193)
Q Consensus 93 ~v~~a~ 98 (193)
.|++|.
T Consensus 89 ~VE~AP 94 (97)
T 2l08_A 89 VVEFAP 94 (97)
T ss_dssp EEEECC
T ss_pred EEEecC
Confidence 567764
No 215
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.77 E-value=9.1e-05 Score=48.71 Aligned_cols=55 Identities=20% Similarity=0.196 Sum_probs=44.6
Q ss_pred cEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhC
Q 029462 21 SRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMD 83 (193)
Q Consensus 21 ~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~ 83 (193)
..||+-++|.++...||.++|..||.| .|.++.| .-|||.|.+.+.|..|+..+.
T Consensus 16 ~HVf~l~FP~ewKt~DI~~lFs~fggv-~I~WidD-------TsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 16 DHVLHVTFPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CSEEEEECCTTCCHHHHHHHHTTTCSC-CCEEEET-------TEEEEECSCHHHHHHHHHHHH
T ss_pred CeEEEEeCChhhhhHHHHHHhhccCCE-EEEEEcC-------CeEEEEecCHHHHHHHHHhcc
Confidence 335555999999999999999999954 3555543 479999999999999998764
No 216
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.59 E-value=0.0001 Score=48.65 Aligned_cols=53 Identities=21% Similarity=0.164 Sum_probs=43.8
Q ss_pred EEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhC
Q 029462 23 LVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMD 83 (193)
Q Consensus 23 l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~ 83 (193)
||+-++|.++...||.++|..||. ..|.++.| .-|||.|.+.+.|..|+..+.
T Consensus 8 V~~l~FP~ewKt~Di~~lFs~fgg-v~I~WidD-------TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHVTFPKEWKTSDLYQLFSAFGN-IQISWIDD-------TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEECCTTCCHHHHHHHTTTSEE-EEEEEEET-------TEEEEEEEEECHHHHHHHHHT
T ss_pred EEEEeCChhhhhHHHHHHHhccCC-EEEEEEcC-------CeEEEEecCHHHHHHHHHhcc
Confidence 444499999999999999999994 44555544 479999999999999998775
No 217
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=97.49 E-value=0.00012 Score=50.80 Aligned_cols=76 Identities=20% Similarity=0.277 Sum_probs=54.2
Q ss_pred cEEEEeCCCCCCCHHHHHHhhccCCceEE-EEEcCC------------CCCC-CcceEEEEEeCCHHHHHHHHHHhCCce
Q 029462 21 SRLVFWFATFAMIVEDLRGPFGQFGRLKD-IYLPRD------------YYTG-EPRGFGFVQYIDPADAADAKYHMDGYL 86 (193)
Q Consensus 21 ~rl~V~nl~~~~t~~~l~~~F~~~G~i~~-v~i~~~------------~~~g-~~~g~afV~f~~~~~a~~Ai~~l~g~~ 86 (193)
.-|.|-++|+..+ ..|.+.|++||.|.. +.+..+ +..+ ...++..|+|.+..+|++||.. ||..
T Consensus 8 ~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~-NG~i 85 (132)
T 3p3d_A 8 LAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLE-NGAV 85 (132)
T ss_dssp CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTT-TTCE
T ss_pred eEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHh-CCeE
Confidence 4588888987655 456678999999876 222110 0000 1356789999999999999954 9999
Q ss_pred ecCcEEEEEEee
Q 029462 87 LLGRELTVVFAE 98 (193)
Q Consensus 87 i~g~~l~v~~a~ 98 (193)
|+|.-|-|....
T Consensus 86 i~G~mIGV~Py~ 97 (132)
T 3p3d_A 86 FNGVLLGVIPYT 97 (132)
T ss_dssp ETTEECEEEECC
T ss_pred eCcEEEEEEECC
Confidence 999877777653
No 218
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=97.07 E-value=0.00028 Score=59.37 Aligned_cols=54 Identities=7% Similarity=0.225 Sum_probs=41.0
Q ss_pred cEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHH
Q 029462 21 SRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 80 (193)
Q Consensus 21 ~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~ 80 (193)
..|+|. ++..+++.+|.++|++||.|.++.+..++ ..||+|+|.+.++++.++.
T Consensus 54 rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 54 RTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp TEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHS
T ss_pred ceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHh
Confidence 458997 78889999999999999999999887654 5899999999998887753
No 219
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=96.84 E-value=0.00041 Score=49.26 Aligned_cols=40 Identities=20% Similarity=0.073 Sum_probs=36.2
Q ss_pred CCcceEEEEEeCCHHHHHHHHHHh-CCceecCcEEEEEEeec
Q 029462 59 GEPRGFGFVQYIDPADAADAKYHM-DGYLLLGRELTVVFAEE 99 (193)
Q Consensus 59 g~~~g~afV~f~~~~~a~~Ai~~l-~g~~i~g~~l~v~~a~~ 99 (193)
...+|+++|+|.+.++|++|+..| ||..|+| .|.|.++..
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~ 50 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATK 50 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTT
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccC
Confidence 456899999999999999999999 9999999 999988754
No 220
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=96.82 E-value=0.0012 Score=47.05 Aligned_cols=35 Identities=14% Similarity=-0.034 Sum_probs=27.6
Q ss_pred EEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCce
Q 029462 50 IYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYL 86 (193)
Q Consensus 50 v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~ 86 (193)
+.|+++. ...+|||||+|.+.++|++|+..+++..
T Consensus 3 ~kl~ln~--~~~~G~~fV~f~~~~~A~~al~~~~~~~ 37 (158)
T 2kn4_A 3 YKLILNG--KTLKGETTTEAVDAATAEKVFKQYANDN 37 (158)
T ss_dssp EEEEEEC--SSCEEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred EEEEecC--ccccchhHHHHHHHHhHHHHHHhhcccC
Confidence 4455543 3579999999999999999999887643
No 221
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=93.45 E-value=0.21 Score=42.57 Aligned_cols=54 Identities=19% Similarity=0.137 Sum_probs=43.4
Q ss_pred EEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCC
Q 029462 23 LVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDG 84 (193)
Q Consensus 23 l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g 84 (193)
+|+-.+|..+...+|.++|+.||.| .|.++. ...|||.|.+.+.|..++..++.
T Consensus 442 vl~v~f~~~~~~~~i~~~fs~fg~v-~V~wid-------dt~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 442 VLHVTFPKEWKTSDLYQLFSAFGNI-QISWID-------DTSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp EEEEECCTTCCHHHHHHHGGGGCCC-EEEECS-------SSEEEEECSCHHHHHHHHHHHTT
T ss_pred EEEEeCCCCCCHHHHHHHHHhcCCE-EEEEEc-------CCeEEEEECCHHHHHHHHHHHHh
Confidence 4444588899999999999999964 455543 45799999999999999998853
No 222
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=93.36 E-value=0.21 Score=30.80 Aligned_cols=67 Identities=16% Similarity=0.190 Sum_probs=42.7
Q ss_pred EEEeC-CCCCCCHHHHHHhhccCC-----ceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEEE
Q 029462 23 LVFWF-ATFAMIVEDLRGPFGQFG-----RLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 96 (193)
Q Consensus 23 l~V~n-l~~~~t~~~l~~~F~~~G-----~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l~v~~ 96 (193)
|||.. -...+...+|..++..-+ .|-.+.|. ..|.||+... +.|..++..|++..+.|+.+.|+.
T Consensus 3 ~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~--------d~~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~ 73 (76)
T 2g0c_A 3 LYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIM--------DNASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNK 73 (76)
T ss_dssp EEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEEC--------SSCEEEEECT-TCHHHHHHHHTTCCC---CCCEEE
T ss_pred EEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEe--------CCcEEEEECH-HHHHHHHHHhccccCcCceEEEEE
Confidence 55532 133466667777766543 45567775 4589999865 668889999999999999999987
Q ss_pred ee
Q 029462 97 AE 98 (193)
Q Consensus 97 a~ 98 (193)
+.
T Consensus 74 ~~ 75 (76)
T 2g0c_A 74 AN 75 (76)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 223
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=89.39 E-value=2.9 Score=26.77 Aligned_cols=59 Identities=5% Similarity=-0.009 Sum_probs=45.8
Q ss_pred ccCccEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhC
Q 029462 17 VEEISRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMD 83 (193)
Q Consensus 17 ~~~~~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~ 83 (193)
+...+-|-|-|+|..+-..++.-...-.|---.|..+ -|-|.|.|.+.++..-||..|-
T Consensus 9 ikqnclikiinipqgtlkaevvlavrhlgyefycdyi--------dgqamirfqnsdeqrlaiqkll 67 (129)
T 4eyt_A 9 IKQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI--------DGQAMIRFQNSDEQRLAIQKLL 67 (129)
T ss_dssp -CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC--------SSCEEEEESSHHHHHHHHHHHE
T ss_pred hhhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee--------cCeeEEEecCChHHHHHHHHHH
Confidence 4556778899999998888776666667765667666 5679999999999999988773
No 224
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=87.53 E-value=2.8 Score=34.82 Aligned_cols=7 Identities=0% Similarity=-0.178 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 029462 73 ADAADAK 79 (193)
Q Consensus 73 ~~a~~Ai 79 (193)
++....+
T Consensus 117 ~~L~~~F 123 (437)
T 3pgw_S 117 SKLRREF 123 (437)
T ss_pred HHHHHHH
Confidence 3333333
No 225
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=73.90 E-value=8.3 Score=27.77 Aligned_cols=55 Identities=11% Similarity=-0.032 Sum_probs=35.4
Q ss_pred EEEEeCCCC-C--------CCHHHHHHhh--ccCCceEEEEEcCCCCCCCcceEEEEEeCC-HHHHHHHH
Q 029462 22 RLVFWFATF-A--------MIVEDLRGPF--GQFGRLKDIYLPRDYYTGEPRGFGFVQYID-PADAADAK 79 (193)
Q Consensus 22 rl~V~nl~~-~--------~t~~~l~~~F--~~~G~i~~v~i~~~~~~g~~~g~afV~f~~-~~~a~~Ai 79 (193)
.++|-|++. . .....|.+.| ..|.++....+... ....|+|+|+|.+ ..-...|+
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l~~~---~Gh~g~aIv~F~~dw~Gf~~A~ 80 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNY---LGHSGTAIVEFNKDWNGLHNGL 80 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEEECS---SBEEEEEEEECCSSHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEecccC---CCCceeEEEEecCChHHHHHHH
Confidence 467778876 2 2346888877 88988765444432 2357899999985 33444444
No 226
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=72.71 E-value=12 Score=21.89 Aligned_cols=55 Identities=9% Similarity=-0.132 Sum_probs=41.8
Q ss_pred cEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHh
Q 029462 21 SRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 82 (193)
Q Consensus 21 ~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l 82 (193)
..|.|.++.-..-...|+..+.. ..|..+.+... .+-+.|+|.+.++...+|..+
T Consensus 7 ~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~------~~~~~v~~~~~~~i~~~i~~~ 61 (73)
T 3fry_A 7 IVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLN------EAVVAGNKEDVDKYIKAVEAA 61 (73)
T ss_dssp EEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSS------EEEEEEEGGGHHHHHHHHHHT
T ss_pred EEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEcc------CCEEEEEECCHHHHHHHHHHc
Confidence 45889999877778889999988 78888777543 567788888666677777653
No 227
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=70.30 E-value=0.98 Score=31.82 Aligned_cols=28 Identities=25% Similarity=0.274 Sum_probs=17.2
Q ss_pred HHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeC
Q 029462 35 EDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYI 70 (193)
Q Consensus 35 ~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~ 70 (193)
+++.++|...|.|+-.... +||+||+..
T Consensus 2 ~~~~~l~~~~G~Vkwfn~~--------kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWFNVR--------MGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEEETT--------TTEEEEEEE
T ss_pred CcccccccceeEEEEEECC--------CCeeEEeeC
Confidence 4566777777776644332 899999875
No 228
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=70.29 E-value=11 Score=24.02 Aligned_cols=36 Identities=14% Similarity=0.140 Sum_probs=27.5
Q ss_pred ceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCce
Q 029462 46 RLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYL 86 (193)
Q Consensus 46 ~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~ 86 (193)
+|..+.++.. -.||.||++...++...+|..+.|..
T Consensus 39 ~i~~v~vP~~-----fPGYVfVe~~~~~~~~~~I~~t~gV~ 74 (92)
T 3lpe_A 39 DVYSILASES-----LKGYVLVEAETKGDVEELIKGMPRVR 74 (92)
T ss_dssp CEEEEEECTT-----STTEEEEEESSHHHHHHHHTTCTTEE
T ss_pred cEEEEEEecc-----cCCEEEEEEecchhHHHHHHCCCCce
Confidence 3666666643 48999999999988888887777653
No 229
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=51.89 E-value=24 Score=19.88 Aligned_cols=55 Identities=11% Similarity=0.020 Sum_probs=38.9
Q ss_pred cEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeC---CHHHHHHHHHH
Q 029462 21 SRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYI---DPADAADAKYH 81 (193)
Q Consensus 21 ~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~---~~~~a~~Ai~~ 81 (193)
..+.|.++.-..-...|+..+.....|..+.+... .+-+.|+|. +.++..++|..
T Consensus 4 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~i~~~i~~ 61 (69)
T 4a4j_A 4 INLQLEGMDCTSCASSIERAIAKVPGVQSCQVNFA------LEQAVVSYHGETTPQILTDAVER 61 (69)
T ss_dssp EEEEEESCCSHHHHHHHHHHHHTSTTEEEEEEETT------TTEEEEEECTTCCHHHHHHHHHH
T ss_pred EEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEec------CCEEEEEECCCCCHHHHHHHHHH
Confidence 35788888776667889999998877887777543 456778874 34556666654
No 230
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=48.95 E-value=36 Score=19.47 Aligned_cols=56 Identities=7% Similarity=-0.089 Sum_probs=40.9
Q ss_pred cEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeC----CHHHHHHHHHHh
Q 029462 21 SRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYI----DPADAADAKYHM 82 (193)
Q Consensus 21 ~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~----~~~~a~~Ai~~l 82 (193)
..+.|.++.-..-...|+..+.+...|..+.+... .+-+.|+|. +.++..++|..+
T Consensus 4 ~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 63 (74)
T 3dxs_X 4 IQVGVTGMTCAACSNSVEAALMNVNGVFKASVALL------QNRADVVFDPNLVKEEDIKEEIEDA 63 (74)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEEGG------GTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHhcCCCEEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHHC
Confidence 34778888776667788999998877877776543 567788885 566777777664
No 231
>2lfv_A Protein DAMX; cell division, peptidoglycan binding domain, murein binding bacterial cell division protein, RNP fold, RNP domain, cell; NMR {Escherichia coli}
Probab=54.49 E-value=3.6 Score=27.15 Aligned_cols=54 Identities=17% Similarity=0.144 Sum_probs=32.8
Q ss_pred CCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEE--EEEeCCHHHHHHHHHHhCCce
Q 029462 31 AMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFG--FVQYIDPADAADAKYHMDGYL 86 (193)
Q Consensus 31 ~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~a--fV~f~~~~~a~~Ai~~l~g~~ 86 (193)
...+++|..+..+.+ +..+.+......|+. -|. +-.|.+.++|++|+..|....
T Consensus 33 ~~~~~~l~~f~~~~~-l~~~~v~~t~rnGk~-WyvVlyG~Y~s~~~A~~A~~~LP~~l 88 (106)
T 2lfv_A 33 SSNYDNLNGWAKKEN-LKNYVVYETTRNGQP-WYVLVSGVYASKEEAKKAVSTLPADV 88 (106)
Confidence 345667777777775 344554432222322 222 347889999999998886443
No 232
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=48.28 E-value=28 Score=21.87 Aligned_cols=56 Identities=7% Similarity=0.112 Sum_probs=35.9
Q ss_pred EEEeCCCCCCCHHHHHHhhcc-CC-ceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHH
Q 029462 23 LVFWFATFAMIVEDLRGPFGQ-FG-RLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 81 (193)
Q Consensus 23 l~V~nl~~~~t~~~l~~~F~~-~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~ 81 (193)
.|+..+....+..+|++.+++ |+ .|..|..+.-+ ...--|||.+..-.+|......
T Consensus 25 ~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~---~~~KKA~V~L~~~~~a~dva~k 82 (86)
T 3j21_T 25 KLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITP---RGEKKAYVKLKPEYSASEVAAR 82 (86)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECT---TSCEEEEEEECTTSCHHHHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcC---CCceEEEEEcCCCCcHHHHHHh
Confidence 344456677898888887776 55 56666544322 1234599999877777665444
No 233
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=47.06 E-value=6.5 Score=30.47 Aligned_cols=35 Identities=9% Similarity=-0.160 Sum_probs=26.8
Q ss_pred cEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCC
Q 029462 21 SRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRD 55 (193)
Q Consensus 21 ~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~ 55 (193)
.-++|+|||+.++...|..++.....+..+.++.+
T Consensus 115 ~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~m~Q 149 (279)
T 3uzu_A 115 SLRIIGNLPYNISSPLLFHLMSFAPVVIDQHFMLQ 149 (279)
T ss_dssp CEEEEEECCHHHHHHHHHHHGGGGGGEEEEEEEEE
T ss_pred ceEEEEccCccccHHHHHHHHhccCCccEEEEEee
Confidence 34799999999999999999986555665555543
No 234
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=45.82 E-value=39 Score=21.93 Aligned_cols=48 Identities=19% Similarity=0.304 Sum_probs=27.2
Q ss_pred CCCCHHHHHHhhcc-CC---ceEEE-EEcCCCCCCCcceEEEEEeCCHHHHHHH
Q 029462 30 FAMIVEDLRGPFGQ-FG---RLKDI-YLPRDYYTGEPRGFGFVQYIDPADAADA 78 (193)
Q Consensus 30 ~~~t~~~l~~~F~~-~G---~i~~v-~i~~~~~~g~~~g~afV~f~~~~~a~~A 78 (193)
..++..+|++.+.+ |+ .+..| .+......|++.|||.| |.+.+.|++.
T Consensus 28 ~tpsk~eirekLAk~~~~~~~~Vvv~~~~t~fG~gkstG~a~I-Yds~e~akk~ 80 (101)
T 1xn9_A 28 STPSRNDVRNKLAAMLNAPLELLVIQRIKTEYGMQESKGYAKL-YEDADRMKQV 80 (101)
T ss_dssp SCCCHHHHHHHHHHHTTCCTTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 44667777766654 33 23323 34444445667778766 6666666544
No 235
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=45.60 E-value=9.3 Score=24.94 Aligned_cols=11 Identities=18% Similarity=-0.013 Sum_probs=5.1
Q ss_pred CHHHHHHHHHH
Q 029462 71 DPADAADAKYH 81 (193)
Q Consensus 71 ~~~~a~~Ai~~ 81 (193)
++++.++.+..
T Consensus 29 t~~~l~~~F~~ 39 (115)
T 3beg_B 29 SWQDLKDHMRE 39 (115)
T ss_dssp CTTHHHHHHGG
T ss_pred CHHHHHHHHHh
Confidence 34455554443
No 236
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=45.46 E-value=15 Score=28.26 Aligned_cols=32 Identities=9% Similarity=0.137 Sum_probs=25.1
Q ss_pred cEEEEeCCCCCCCHHHHHHhhccCCceEEEEEc
Q 029462 21 SRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLP 53 (193)
Q Consensus 21 ~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~ 53 (193)
.-++|+|||+.++...|..++.. ..+..+.++
T Consensus 111 ~~~iv~NlPy~iss~il~~ll~~-~~~~~~~lm 142 (271)
T 3fut_A 111 GSLLVANLPYHIATPLVTRLLKT-GRFARLVFL 142 (271)
T ss_dssp TEEEEEEECSSCCHHHHHHHHHH-CCEEEEEEE
T ss_pred ccEEEecCcccccHHHHHHHhcC-CCCCEEEEE
Confidence 34799999999999999999877 556555444
No 237
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=45.24 E-value=49 Score=21.72 Aligned_cols=46 Identities=15% Similarity=0.255 Sum_probs=27.1
Q ss_pred CCCHHHHHHhhcc-CC---ceEEE-EEcCCCCCCCcceEEEEEeCCHHHHHH
Q 029462 31 AMIVEDLRGPFGQ-FG---RLKDI-YLPRDYYTGEPRGFGFVQYIDPADAAD 77 (193)
Q Consensus 31 ~~t~~~l~~~F~~-~G---~i~~v-~i~~~~~~g~~~g~afV~f~~~~~a~~ 77 (193)
.++..+|++-+.+ |+ .+..| .+......|++.|||.| |.+.+.|++
T Consensus 38 tpsk~eirekLA~~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 88 (107)
T 2v94_A 38 TPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGSYKSKGYAKY-YYDKDRMLY 88 (107)
T ss_dssp CCCHHHHHHHHHHHHTCCGGGEEEEEEECCTTCSEEEEEEEE-ESSHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHh
Confidence 4566777665543 33 22223 44444456777788877 677777764
No 238
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=44.54 E-value=35 Score=22.33 Aligned_cols=34 Identities=15% Similarity=0.323 Sum_probs=26.1
Q ss_pred ceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCC
Q 029462 46 RLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDG 84 (193)
Q Consensus 46 ~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g 84 (193)
.|..+..... .+||-|||=.+..++..|+..+.+
T Consensus 40 ~I~Si~~~~~-----lkGyIyVEA~~~~~V~~ai~gi~~ 73 (106)
T 3h7h_B 40 QIKSVVAPEH-----VKGYIYVEAYKQTHVKQAIEGVGN 73 (106)
T ss_dssp CCCEEEECTT-----CCSEEEEEESSHHHHHHHHTTCGG
T ss_pred ceEEEEecCC-----CceEEEEEeCCHHHHHHHHhcccc
Confidence 4667666533 499999999999999999876544
No 239
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=42.70 E-value=48 Score=21.56 Aligned_cols=47 Identities=15% Similarity=0.202 Sum_probs=27.4
Q ss_pred CCCCHHHHHHhhcc-CC---ceEEE-EEcCCCCCCCcceEEEEEeCCHHHHHH
Q 029462 30 FAMIVEDLRGPFGQ-FG---RLKDI-YLPRDYYTGEPRGFGFVQYIDPADAAD 77 (193)
Q Consensus 30 ~~~t~~~l~~~F~~-~G---~i~~v-~i~~~~~~g~~~g~afV~f~~~~~a~~ 77 (193)
..++..+|++-+.+ |+ .+..| .+......|++.|||.| |.+.+.|++
T Consensus 28 ~tpsk~eirekLAk~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 79 (102)
T 1ywx_A 28 ATPSIKDVKMKLVAVLNANKQVLVVDTLDQIFGKLEAEGYAKI-YNDEKAMAT 79 (102)
T ss_dssp CCCCHHHHHHHHHHHHTSCSTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHh
Confidence 44667777766554 33 22222 34444456677788876 677777754
No 240
>2xmw_A PACS-N, cation-transporting ATPase PACS; hydrolase, Cu(I)-binding, trafficking; 1.80A {Synechocystis SP} PDB: 2gcf_A
Probab=42.37 E-value=43 Score=18.46 Aligned_cols=56 Identities=13% Similarity=0.029 Sum_probs=37.1
Q ss_pred cEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCC---HHHHHHHHHHh
Q 029462 21 SRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYID---PADAADAKYHM 82 (193)
Q Consensus 21 ~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~---~~~a~~Ai~~l 82 (193)
..+.|.++.-..-...|+..+.....|..+.+... .+.+.|+|.. .++...+|..+
T Consensus 5 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~i~~~i~~~ 63 (71)
T 2xmw_A 5 INLQLEGMRCAACASSIERAIAKVPGVQSCQVNFA------LEQAVVSYHGETTPQILTDAVERA 63 (71)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETT------TTEEEEEEC---CHHHHHHHHHHH
T ss_pred EEEEECCcccHHHHHHHHHHHhcCCCeEEEEEEcc------CCEEEEEECCCCCHHHHHHHHHHc
Confidence 34778888765556778888888877887777543 4567788863 34445555543
No 241
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1, P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Probab=42.04 E-value=40 Score=27.47 Aligned_cols=58 Identities=12% Similarity=0.028 Sum_probs=38.4
Q ss_pred EEEeCCCCCC----CHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCc
Q 029462 23 LVFWFATFAM----IVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGR 90 (193)
Q Consensus 23 l~V~nl~~~~----t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~ 90 (193)
-+||||..-. ....+.++..+||.|..+.+. +.-+|...+.+.++.++.. ++..+.++
T Consensus 17 PliGnl~~l~~~~~~~~~~~~~~~kYG~i~~~~~g---------~~~~vvv~~p~~~k~il~~-~~~~f~~r 78 (494)
T 3swz_A 17 PLVGSLPFLPRHGHMHNNFFKLQKKYGPIYSVRMG---------TKTTVIVGHHQLAKEVLIK-KGKDFSGR 78 (494)
T ss_dssp CEEEEESSCTTSSCHHHHHHHTHHHHCSEEEEEET---------TEEEEEECSHHHHHHHHTT-TTTTTBBC
T ss_pred CeEcchHHhCCCCchhHHHHHHHHHcCCEEEEEeC---------CCCEEEECCHHHHHHHHHh-CcHhhCCC
Confidence 3678876432 245677888899999888764 2346667788888888743 33444433
No 242
>2g9o_A Copper-transporting ATPase 1; menkes disease, solution structure, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens} PDB: 2ga7_A
Probab=41.27 E-value=53 Score=19.83 Aligned_cols=55 Identities=11% Similarity=0.122 Sum_probs=38.5
Q ss_pred EEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeC----CHHHHHHHHHHh
Q 029462 22 RLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYI----DPADAADAKYHM 82 (193)
Q Consensus 22 rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~----~~~~a~~Ai~~l 82 (193)
.|.|.++.-..-...|+..+.....|..+.+... .+.+.|+|. +.++..++|..+
T Consensus 6 ~l~v~Gm~C~~C~~~Ie~~L~~~~GV~~v~v~l~------~~~~~V~~~~~~~~~~~i~~~i~~~ 64 (90)
T 2g9o_A 6 TFIIDGMHCKSCVSNIESTLSALQYVSSIVVSLE------NRSAIVVYNASSVTPESLRKAIEAV 64 (90)
T ss_dssp EEEEESCCHHHHHHHHHHHHTTCTTEEEEEEETT------TTEEEEEECCSSCCTHHHHHHHHTT
T ss_pred EEEECCcCCHHHHHHHHHHHHcCCCeeEEEEEcc------CCEEEEEECCCCCCHHHHHHHHHhc
Confidence 4778888765556778888988878888777643 467788885 345556666554
No 243
>1mli_A Muconolactone isomerase; intramolecular oxidoreductase; 3.30A {Pseudomonas putida} SCOP: d.58.4.1
Probab=41.16 E-value=69 Score=20.55 Aligned_cols=58 Identities=7% Similarity=0.032 Sum_probs=42.6
Q ss_pred eCCCCCCCHHHHHHh----------hccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee
Q 029462 26 WFATFAMIVEDLRGP----------FGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLL 87 (193)
Q Consensus 26 ~nl~~~~t~~~l~~~----------F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i 87 (193)
-++|.+++.+++.++ ++.-|.+..++-+ .|.-..++++.-.+.++..+.|..|--..+
T Consensus 9 V~~P~~~~~~~~~~~~a~Eka~a~eLq~~G~~~~lWRv----~G~y~nisIfdv~s~~eLh~iL~~LPLfpy 76 (96)
T 1mli_A 9 VKLPVDMDPAKATQLKADEKELAQRLQREGTWRHLWRI----AGHYANYSVFDVPSVEALHDTLMQLPLFPY 76 (96)
T ss_pred eeCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeEEEEEe----cCCccEEEEEEcCCHHHHHHHHHhCCCCce
Confidence 378888887765443 4556899888765 566688999999999999888776665443
No 244
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=38.61 E-value=36 Score=29.69 Aligned_cols=55 Identities=9% Similarity=0.061 Sum_probs=38.4
Q ss_pred CCCCCCHHHHHHhhc----cCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhC
Q 029462 28 ATFAMIVEDLRGPFG----QFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMD 83 (193)
Q Consensus 28 l~~~~t~~~l~~~F~----~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~ 83 (193)
.+.+.+--||..+|- .+|-|+.+.|...+.. ....+++|.|.+.++|.+++..+-
T Consensus 351 ~~k~~aGyDL~~L~iGSEGTLGIITeatLrL~P~P-~~~~~~~~~f~d~~~a~~av~~i~ 409 (658)
T 4bby_A 351 GPRMSTGPDIHHFIMGSEGTLGVITEATIKIRPTP-EYQKYGSVAFPNFEQGVACLREIA 409 (658)
T ss_dssp CSSCCSSSCTHHHHTTCTTSSCEEEEEEEECEECC-SEEEEEEEEESSHHHHHHHHHHHH
T ss_pred ccccCCCcCHHHHhccCCCcCcceeeeeeeeccCC-ccccccccccCCchhhhhhHHHHH
Confidence 344444456777773 6889998877654422 335678999999999999887653
No 245
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=37.01 E-value=27 Score=26.42 Aligned_cols=31 Identities=13% Similarity=0.078 Sum_probs=23.0
Q ss_pred EEEEeCCCCCCCHHHHHHhhccCCceEEEEE
Q 029462 22 RLVFWFATFAMIVEDLRGPFGQFGRLKDIYL 52 (193)
Q Consensus 22 rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i 52 (193)
-++|+|||+.++...|..++.....+..+.+
T Consensus 92 ~~vvsNlPY~i~~~il~~ll~~~~~~~~~~~ 122 (252)
T 1qyr_A 92 LRVFGNLPYNISTPLMFHLFSYTDAIADMHF 122 (252)
T ss_dssp EEEEEECCTTTHHHHHHHHHTTGGGEEEEEE
T ss_pred eEEEECCCCCccHHHHHHHHhcCCCcceEEE
Confidence 5899999999999888888875434444433
No 246
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.92 E-value=19 Score=21.52 Aligned_cols=19 Identities=32% Similarity=0.503 Sum_probs=13.0
Q ss_pred CceEEEEEcCCCCCCCcceEEEEEeCC
Q 029462 45 GRLKDIYLPRDYYTGEPRGFGFVQYID 71 (193)
Q Consensus 45 G~i~~v~i~~~~~~g~~~g~afV~f~~ 71 (193)
|.|+.|... ++.+||.|++
T Consensus 28 GtV~kV~~~--------~~~ClV~FeD 46 (68)
T 2e5p_A 28 GTIKKVDSA--------REVCLVQFED 46 (68)
T ss_dssp EEEEEEETT--------TTEEEEEETT
T ss_pred eEEEEEecC--------CcEEEEEEcc
Confidence 556655432 6789999975
No 247
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=36.55 E-value=7.4 Score=26.37 Aligned_cols=28 Identities=14% Similarity=0.042 Sum_probs=0.0
Q ss_pred eEEEEEeCCHHHHHHHHHHhCCceecCc
Q 029462 63 GFGFVQYIDPADAADAKYHMDGYLLLGR 90 (193)
Q Consensus 63 g~afV~f~~~~~a~~Ai~~l~g~~i~g~ 90 (193)
-++|++|++...+..||..|+|....|.
T Consensus 5 ~~~~~~~~~~~~~~~a~~~~~g~~~~g~ 32 (135)
T 2lea_A 5 HHHHHHSSGLVPRGSHMASMTGGQQMGR 32 (135)
T ss_dssp ----------------------------
T ss_pred ccccccccCCCchhhhhhhccCCCCCCC
Confidence 4678889999999999999988765553
No 248
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=36.46 E-value=9.7 Score=29.00 Aligned_cols=32 Identities=16% Similarity=0.055 Sum_probs=25.2
Q ss_pred EEEeCCCCCCCHHHHHHhhccCCceEEEEEcC
Q 029462 23 LVFWFATFAMIVEDLRGPFGQFGRLKDIYLPR 54 (193)
Q Consensus 23 l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~ 54 (193)
.+|+|||+.++...|..++.....+..+.++.
T Consensus 99 ~vv~NlPY~is~~il~~ll~~~~~~~~~~lm~ 130 (255)
T 3tqs_A 99 RVVGNLPYNISTPLLFHLFSQIHCIEDMHFML 130 (255)
T ss_dssp EEEEECCHHHHHHHHHHHHHTGGGEEEEEEEE
T ss_pred EEEecCCcccCHHHHHHHHhCCCChheEEEEE
Confidence 48999999999999999998766666555543
No 249
>2e7g_A Putative ribosome-binding factor A; RBFA, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.52.7.1
Probab=36.25 E-value=96 Score=20.78 Aligned_cols=36 Identities=11% Similarity=0.159 Sum_probs=20.5
Q ss_pred CCceEEEEEcCCCCCCCcceEEEEE-eCCHHHHHHHHHHhC
Q 029462 44 FGRLKDIYLPRDYYTGEPRGFGFVQ-YIDPADAADAKYHMD 83 (193)
Q Consensus 44 ~G~i~~v~i~~~~~~g~~~g~afV~-f~~~~~a~~Ai~~l~ 83 (193)
+-.|..|.|-.|. .....||. |-+.++.+.++..|+
T Consensus 43 ~vtVt~V~vS~Dl----~~AkVyvs~~~~~~~~~~~~~~L~ 79 (129)
T 2e7g_A 43 NVELSKVSLTPDF----SACRAYWKTTLSAEQNAHMEAVLQ 79 (129)
T ss_dssp TCCEEEEEECTTS----CCEEEEECCCSCHHHHHHHHHHHH
T ss_pred eeEEEEEEECCCC----cEEEEEEEecCChhhHHHHHHHHH
Confidence 3478899988762 23445665 445554444544444
No 250
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=34.84 E-value=32 Score=22.35 Aligned_cols=66 Identities=17% Similarity=0.148 Sum_probs=41.7
Q ss_pred EeCCCCCCCHHHHHHhh-ccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEeec
Q 029462 25 FWFATFAMIVEDLRGPF-GQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEE 99 (193)
Q Consensus 25 V~nl~~~~t~~~l~~~F-~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l~v~~a~~ 99 (193)
|-.++..+.-++|..-. ..||.-.++.... .-..|-..+.+|..+||+.|+-.. .-+.|+|-+..+
T Consensus 21 Ii~f~RPv~f~eL~~Kv~~~fGq~ldL~y~n--------~EllIpl~sQeDLDkaIellDrss-~~kSLrIlL~~~ 87 (103)
T 2cu1_A 21 ILQFPRPVKLEDLRSKAKIAFGQSMDLHYTN--------NELVIPLTTQDDLDKAVELLDRSI-HMKSLKILLVIN 87 (103)
T ss_dssp EEEEESSCCHHHHHHHHHHHHSSCEEEEECS--------SSSCEECCSHHHHHHHHHHHHHCS-SCCSEEEEEEEC
T ss_pred EEeccCCccHHHHHHHHHHHhCCeeeEEEec--------ceEEEeccCHHHHHHHHHHHccCC-cccceEEEEecC
Confidence 34456667766665443 3578777776652 236788899999999999887542 223344444433
No 251
>3lo3_A Uncharacterized conserved protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.38A {Colwellia psychrerythraea} SCOP: d.58.4.0
Probab=34.76 E-value=80 Score=19.79 Aligned_cols=20 Identities=10% Similarity=0.036 Sum_probs=16.2
Q ss_pred cceEEEEEeCCHHHHHHHHH
Q 029462 61 PRGFGFVQYIDPADAADAKY 80 (193)
Q Consensus 61 ~~g~afV~f~~~~~a~~Ai~ 80 (193)
.....+|+|.+.+.|+++..
T Consensus 52 ~~~~viieFps~~aa~a~y~ 71 (94)
T 3lo3_A 52 HKAQVILEFPSREDAYNWYH 71 (94)
T ss_dssp CSEEEEEEESSHHHHHHHHH
T ss_pred CCeEEEEECCCHHHHHHHHC
Confidence 35678999999999988763
No 252
>2xzm_P RPS24E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_P
Probab=34.50 E-value=81 Score=21.99 Aligned_cols=46 Identities=20% Similarity=0.307 Sum_probs=27.4
Q ss_pred CCCHHHHHHhhcc-CC---ceEEE-EEcCCCCCCCcceEEEEEeCCHHHHHH
Q 029462 31 AMIVEDLRGPFGQ-FG---RLKDI-YLPRDYYTGEPRGFGFVQYIDPADAAD 77 (193)
Q Consensus 31 ~~t~~~l~~~F~~-~G---~i~~v-~i~~~~~~g~~~g~afV~f~~~~~a~~ 77 (193)
.++..+|.+.+.. |+ .+..| .|......|.+.|||.| |++.+.|..
T Consensus 32 TpSk~eIrekLAkmy~~~~d~VvV~g~rT~fGggkStGfa~I-YDs~e~aKk 82 (149)
T 2xzm_P 32 TASKEKIREELAKQLKVDARNVVVYGFSTQYGGGKSTGFALV-YDNQQYLLK 82 (149)
T ss_dssp SCCHHHHHHHHHHHHTCCGGGEEEEEECCCSSSSEEEEEEEE-ESCHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-eCCHHHHHh
Confidence 4566777766654 43 22222 34444455677788877 677777764
No 253
>2ns6_A Mobilization protein A; nickase, 5-strand antiparallel beta sheet, metalloenzyme, hydrolase; 2.10A {Pseudomonas aeruginosa}
Probab=34.15 E-value=1e+02 Score=22.18 Aligned_cols=50 Identities=4% Similarity=-0.057 Sum_probs=35.1
Q ss_pred CccEEEEeCCCCCCCHHH--------HHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCC
Q 029462 19 EISRLVFWFATFAMIVED--------LRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYID 71 (193)
Q Consensus 19 ~~~rl~V~nl~~~~t~~~--------l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~ 71 (193)
...+=|+-.||.+++.++ ++++|..+|-|..+.|..+. ...-.|.|.|.+
T Consensus 69 ~lare~~iALP~EL~~eq~~~L~~~f~~~~~~~~G~~~d~AIH~~~---~~NpHaHim~t~ 126 (185)
T 2ns6_A 69 RLFKEVEFALPVELTLDQQKALASEFAQHLTGAERLPYTLAIHAGG---GENPHCHLMISE 126 (185)
T ss_dssp CCEEEEEEECCTTSCHHHHHHHHHHHHHHHHTTTTCCEEEEEEEET---TTEEEEEEEECC
T ss_pred eEEEEEEEECCccCCHHHHHHHHHHHHHHHHHhcCCEEEEEEEcCC---CCCceEEEEEee
Confidence 445667778999999765 34567778888888887532 235578888765
No 254
>2npt_B Mitogen-activated protein kinase kinase kinase 2; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2
Probab=33.87 E-value=78 Score=20.29 Aligned_cols=54 Identities=19% Similarity=0.142 Sum_probs=38.2
Q ss_pred EEeCCCCCCCHHHHHHhhc-cCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCc
Q 029462 24 VFWFATFAMIVEDLRGPFG-QFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGY 85 (193)
Q Consensus 24 ~V~nl~~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~ 85 (193)
+|--++..+.-++|+.-.. .||...++..+.+ --.|-..+.+|..+||+.|+-.
T Consensus 32 RIi~f~RPv~f~el~~kv~~afGq~ldl~y~nn--------EL~iPL~~Q~DLDkAvelLDrs 86 (100)
T 2npt_B 32 RILQFPRPVKLEDLRSKAKIAFGQSMDLHYTNN--------ELVIPLTTQDDLDKAVELLDRS 86 (100)
T ss_dssp EEEEECSSCCHHHHHHHHHHHHTSCEEEEEEET--------TEEEECCCHHHHHHHHHHHHHC
T ss_pred EEEecCCCccHHHHHHHHHHHhCCeeeeEEecc--------eeEEecccHHHHHHHHHHhccC
Confidence 3445666678777765544 5888888776632 3577888999999999987643
No 255
>2kt2_A Mercuric reductase; nmera, MERA, HMA domain, mercuric resist metal-binding, oxidoreductase; NMR {Pseudomonas aeruginosa} PDB: 2kt3_A
Probab=31.55 E-value=67 Score=17.55 Aligned_cols=54 Identities=9% Similarity=0.078 Sum_probs=36.2
Q ss_pred EEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCC---HHHHHHHHHH
Q 029462 22 RLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYID---PADAADAKYH 81 (193)
Q Consensus 22 rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~---~~~a~~Ai~~ 81 (193)
.+.|.++.-..-...|+..+.....|..+.+... .+.+.|.|.. .++...+|..
T Consensus 3 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~i~~~i~~ 59 (69)
T 2kt2_A 3 HLKITGMTCDSCAAHVKEALEKVPGVQSALVSYP------KGTAQLAIVPGTSPDALTAAVAG 59 (69)
T ss_dssp CEEEESSCSTHHHHHHHHHHHHSTTEEEEEEETT------TTEEEEEECTTSCHHHHHHHHHT
T ss_pred EEEECCcccHHHHHHHHHHHHcCCCeeEEEEEcc------CCEEEEEECCCCCHHHHHHHHHH
Confidence 4678888765556778888888777877777543 4567777763 3445555544
No 256
>1yg0_A COP associated protein; open-faced beta-sandwich, missing C-terminal beta-sheet, Met transport; NMR {Helicobacter pylori}
Probab=31.34 E-value=64 Score=17.28 Aligned_cols=54 Identities=11% Similarity=0.027 Sum_probs=35.4
Q ss_pred EEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeC---CHHHHHHHHHHh
Q 029462 23 LVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYI---DPADAADAKYHM 82 (193)
Q Consensus 23 l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~---~~~~a~~Ai~~l 82 (193)
+.|.++.-..-...|+..+.....|..+.+... .+.+.|+|. +.++..+++..+
T Consensus 5 ~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~i~~~i~~~ 61 (66)
T 1yg0_A 5 FQVPSITCNHCVDKIEKFVGEIEGVSFIDVSVE------KKSVVVEFDAPATQDLIKEALLDA 61 (66)
T ss_dssp ECCTTCSCSHHHHHHHHHHTTSSSEEEEEEETT------TTEEEEEECTTCCHHHHHHHHHHH
T ss_pred EEECCcccHHHHHHHHHHHhcCCCceEEEEEcC------CCEEEEEECCCCCHHHHHHHHHHc
Confidence 556666655556778888888877877776543 456778875 345555666553
No 257
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=31.21 E-value=25 Score=26.51 Aligned_cols=31 Identities=3% Similarity=-0.197 Sum_probs=22.9
Q ss_pred EEEEeCCCCCCCHHHHHHhhccCCceEEEEE
Q 029462 22 RLVFWFATFAMIVEDLRGPFGQFGRLKDIYL 52 (193)
Q Consensus 22 rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i 52 (193)
-++|+|||+.++...|..++.....+..+.+
T Consensus 97 ~~vv~NlPy~i~~~il~~ll~~~~~~~~~~~ 127 (249)
T 3ftd_A 97 LKVVGNLPYNVASLIIENTVYNKDCVPLAVF 127 (249)
T ss_dssp EEEEEECCTTTHHHHHHHHHHTGGGCSEEEE
T ss_pred cEEEEECchhccHHHHHHHHhcCCCCceEEE
Confidence 3789999999999999888876443433333
No 258
>1y3j_A Copper-transporting ATPase 1; ferrodoxin-like fold, beta-alpha-beta-BETA-alpha-beta structure, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1y3k_A
Probab=30.81 E-value=76 Score=17.94 Aligned_cols=55 Identities=16% Similarity=0.086 Sum_probs=37.3
Q ss_pred EEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeC----CHHHHHHHHHHh
Q 029462 22 RLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYI----DPADAADAKYHM 82 (193)
Q Consensus 22 rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~----~~~~a~~Ai~~l 82 (193)
.|.|.++.-..-...|+..+.....|..+.+... .+.+.|.|. +.++...+|..+
T Consensus 6 ~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 64 (77)
T 1y3j_A 6 YIQVTGMTCASCVANIERNLRREEGIYSILVALM------AGKAEVRYNPAVIQPPMIAEFIREL 64 (77)
T ss_dssp EEEESCGGGCSHHHHHHHHHTTSSSEEECCCBTT------TTBEEEEECTTTSCHHHHHHHHHHH
T ss_pred EEEECCeeCHHHHHHHHHHHhcCCCeEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHHc
Confidence 4778888766667788888888877776655432 456778885 345556666654
No 259
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=30.55 E-value=1e+02 Score=19.37 Aligned_cols=53 Identities=13% Similarity=0.058 Sum_probs=33.2
Q ss_pred EEEeCCCCCCCHHHHHHhhcc---C--CceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHh
Q 029462 23 LVFWFATFAMIVEDLRGPFGQ---F--GRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 82 (193)
Q Consensus 23 l~V~nl~~~~t~~~l~~~F~~---~--G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l 82 (193)
|++-.++..++-++|.+.+.. + ++...+.+. |. .| -+|++.+.++.+.|+..+
T Consensus 17 i~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~-DE-eG-----D~itisSd~EL~eAl~l~ 74 (89)
T 1vd2_A 17 IMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWI-DE-EG-----DPCTVSSQLELEEAFRLY 74 (89)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEEC-CS-SS-----CCEECCSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEE-CC-CC-----CcccccCHHHHHHHHHHH
Confidence 556667778887776654432 2 232344443 22 22 478999999999998754
No 260
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=30.44 E-value=49 Score=22.78 Aligned_cols=35 Identities=17% Similarity=0.201 Sum_probs=26.9
Q ss_pred eEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCce
Q 029462 47 LKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYL 86 (193)
Q Consensus 47 i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~ 86 (193)
|..+.++.. ..||-||++...++...++..+.|..
T Consensus 33 i~~v~vp~~-----fPGYVfVe~~~~~~~~~~v~~t~gV~ 67 (152)
T 3p8b_B 33 IYAILAPSR-----VKGYIFVEAPNKGVVDEAIRGIRHAR 67 (152)
T ss_dssp CCEEEECTT-----CCSEEEEEESSHHHHHHHHTTCTTEE
T ss_pred EEEEEeecC-----CCcEEEEEEEchHHHHHHHhCCCCEE
Confidence 566666532 48999999999888888888777654
No 261
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A*
Probab=29.92 E-value=39 Score=28.41 Aligned_cols=42 Identities=19% Similarity=0.028 Sum_probs=27.4
Q ss_pred HHHhh--ccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHH
Q 029462 37 LRGPF--GQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAK 79 (193)
Q Consensus 37 l~~~F--~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai 79 (193)
|..+| ..+|-|+.+.+...+. ......+++.|.+.++|.+|+
T Consensus 218 l~~l~~g~~lGiVt~~~l~l~p~-p~~~~~~~~~f~~~~~~~~~~ 261 (520)
T 1wvf_A 218 LDGMFTQANYGICTKMGFWLMPK-PPVFKPFEVIFEDEADIVEIV 261 (520)
T ss_dssp CHHHHTTSSSCEEEEEEEECEEC-CSEEEEEEEEECCGGGHHHHH
T ss_pred hhhhccCCceEEEEEEEEEEEec-CCeEEEEEEEeCCHHHHHHHH
Confidence 45555 3689999888765542 122456788999877766544
No 262
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=29.55 E-value=1.3e+02 Score=20.09 Aligned_cols=53 Identities=9% Similarity=-0.062 Sum_probs=40.2
Q ss_pred CCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCC
Q 029462 27 FATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDG 84 (193)
Q Consensus 27 nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g 84 (193)
.++.. ..+++.+.+..+-+|..|... +|..--++.|.+.+.++....+..|.+
T Consensus 72 ~~~~~-~~~~~~~~l~~~p~V~~~~~~----tG~~d~~~~v~~~~~~~l~~~~~~l~~ 124 (144)
T 2cfx_A 72 TVKNA-DYERFKSYIQTLPNIEFCYRI----AGAACYMLKINAESLEAVEDFINKTSP 124 (144)
T ss_dssp EEGGG-CHHHHHHHHHTCTTEEEEEEE----ESSSSEEEEEEESSHHHHHHHHHHHTT
T ss_pred EECcc-cHHHHHHHHhcChhhheeeee----eCCCCEEEEEEECCHHHHHHHHHHhcC
Confidence 34433 256777888889999999876 444456788899999999999888765
No 263
>3bb5_A Stress responsive alpha-beta protein; dimeric ferredoxin-like protein, structural genomics, joint for structural genomics, JCSG; HET: CIT; 2.30A {Jannaschia SP}
Probab=29.33 E-value=1.2e+02 Score=19.85 Aligned_cols=56 Identities=11% Similarity=0.140 Sum_probs=33.9
Q ss_pred EEEEeCCCCCCCHHHHHHhhc-------cCCceEEEEEcCCCCC-CCcce--EE-EEEeCCHHHHHH
Q 029462 22 RLVFWFATFAMIVEDLRGPFG-------QFGRLKDIYLPRDYYT-GEPRG--FG-FVQYIDPADAAD 77 (193)
Q Consensus 22 rl~V~nl~~~~t~~~l~~~F~-------~~G~i~~v~i~~~~~~-g~~~g--~a-fV~f~~~~~a~~ 77 (193)
-|.+-.|...++++++.+++. +...|..+.+-.+... +...+ ++ +++|++.++.+.
T Consensus 23 HIVlfklK~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~s~e~~~~g~~~~l~~~F~s~e~l~~ 89 (121)
T 3bb5_A 23 HLVMLEPEGEGAMDRIMEAMAILDGLAPELPGLTEFRHGPNRDFEQKSERYPYGFLCTFTDKAALDA 89 (121)
T ss_dssp EEEEECBCSTTHHHHHHHHHHHHHHHGGGCTTEEEEEEEEBCCTTSSCTTCCEEEEEEESSHHHHHH
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHhcCCCeEEEEECCCCCccccCCCeeEEEEEEECCHHHHHH
Confidence 367778988888776554433 3556777766554321 23233 44 468888776654
No 264
>2g1d_A 30S ribosomal protein S24E; complete proteome, ribosome; NMR {Thermoplasma acidophilum} SCOP: d.12.1.3
Probab=29.00 E-value=43 Score=21.60 Aligned_cols=45 Identities=18% Similarity=0.235 Sum_probs=21.9
Q ss_pred CCCHHHHHHhhcc-CCceEEEEEcCC----CCCCCcceEEEEEeCCHHHHH
Q 029462 31 AMIVEDLRGPFGQ-FGRLKDIYLPRD----YYTGEPRGFGFVQYIDPADAA 76 (193)
Q Consensus 31 ~~t~~~l~~~F~~-~G~i~~v~i~~~----~~~g~~~g~afV~f~~~~~a~ 76 (193)
.++..+|++-+.+ |+.-.++.++.. ...|++.|||.| |.+.+.|+
T Consensus 30 tpsk~eirekLA~~~~~~~~~vvv~~~~t~fG~gks~G~a~I-Yds~e~~k 79 (98)
T 2g1d_A 30 TPSREEIKELIAKHEGVDKELVIVDNNKQLTGKHEIEGYTKI-YADKPSAM 79 (98)
T ss_dssp CCCHHHHHHHHHHHHHSCSTTEECCCCCCCSSSSEEEEEEEE-ESHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHH
Confidence 4566777665553 332222223222 234556677766 45444443
No 265
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=28.95 E-value=30 Score=21.26 Aligned_cols=19 Identities=32% Similarity=0.503 Sum_probs=13.3
Q ss_pred CceEEEEEcCCCCCCCcceEEEEEeCC
Q 029462 45 GRLKDIYLPRDYYTGEPRGFGFVQYID 71 (193)
Q Consensus 45 G~i~~v~i~~~~~~g~~~g~afV~f~~ 71 (193)
|.|+.|... ++.+||.|++
T Consensus 45 GTI~kV~~~--------~e~ClV~F~D 63 (79)
T 2m0o_A 45 GTIKKVDSA--------REVCLVQFED 63 (79)
T ss_dssp EEEEEEETT--------TTEEEEEETT
T ss_pred EEEEEeccC--------CCEEEEEEcC
Confidence 566665533 6789999975
No 266
>2jrh_A Mitogen-activated protein kinase kinase kinase 3; kinase signaling domain, transferase; NMR {Homo sapiens} PDB: 2pph_A
Probab=28.94 E-value=90 Score=19.73 Aligned_cols=63 Identities=14% Similarity=0.071 Sum_probs=40.6
Q ss_pred CCCCCCCHHHHHHhhc-cCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEee
Q 029462 27 FATFAMIVEDLRGPFG-QFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAE 98 (193)
Q Consensus 27 nl~~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~l~v~~a~ 98 (193)
-++..+.-++|+.-.. .||...++..+.+ --.|-..+.+|..+||+.|+-.. .-+.|+|-+..
T Consensus 19 ~f~RPvkf~dl~qkv~~afGq~ldl~y~nn--------EL~iPL~~Q~DLDkAvelLDrs~-~mkSLRIlL~~ 82 (94)
T 2jrh_A 19 AFSRPVKYEDVEHKVTTVFGQPLDLHYMNN--------ELSILLKNQDDLDKAIDILDRSS-SMKSLRILLLS 82 (94)
T ss_dssp EECSSCCHHHHHHHHHHHHCSSEEEEEECS--------SCEEECCSHHHHHHHHHHHHHST-TTTEEEEEEEE
T ss_pred ecCCCccHHHHHHHHHHHhCCeeeeEEecc--------eeEEeccCHHHHHHHHHHhccCc-cccceEEEEEc
Confidence 4556677677665443 5888888776632 24677889999999999876432 22344444443
No 267
>2ew9_A Copper-transporting ATPase 2; copper trafficking, ferrodoxin-like fold, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens}
Probab=28.93 E-value=1.2e+02 Score=19.69 Aligned_cols=55 Identities=13% Similarity=0.104 Sum_probs=32.9
Q ss_pred EEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeC----CHHHHHHHHHHh
Q 029462 22 RLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYI----DPADAADAKYHM 82 (193)
Q Consensus 22 rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~----~~~~a~~Ai~~l 82 (193)
.|.|.++.-..-...|+..+.....|..+.+... .+.+.|+|. +.++..++|..+
T Consensus 83 ~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 141 (149)
T 2ew9_A 83 ELTITGMTCASCVHNIESKLTRTNGITYASVALA------TSKALVKFDPEIIGPRDIIKIIEEI 141 (149)
T ss_dssp EEEEESCCSHHHHHHHHHHHHHSSSCCEEEEETT------TTEEEEECCTTTSCHHHHHHHHHHH
T ss_pred EEEEEeccCHHHHHHHHHHHhcCCCeEEEEEEcC------CCEEEEEECCCCCCHHHHHHHHHhC
Confidence 4667777655445667777776666666655432 456677775 345556666554
No 268
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=28.61 E-value=37 Score=27.25 Aligned_cols=22 Identities=9% Similarity=-0.379 Sum_probs=18.5
Q ss_pred EEEEeCCCCCCCHHHHHHhhcc
Q 029462 22 RLVFWFATFAMIVEDLRGPFGQ 43 (193)
Q Consensus 22 rl~V~nl~~~~t~~~l~~~F~~ 43 (193)
-++|+|||++++...|..++..
T Consensus 144 ~~vvaNLPYnIstpil~~ll~~ 165 (353)
T 1i4w_A 144 FLTVANVTGEGSEGLIMQWLSC 165 (353)
T ss_dssp EEEEEECCSTTHHHHHHHHHHH
T ss_pred eEEEEECCCchHHHHHHHHHHh
Confidence 3799999999998888887763
No 269
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=28.52 E-value=40 Score=23.57 Aligned_cols=55 Identities=5% Similarity=0.223 Sum_probs=33.3
Q ss_pred EEeCCCCCCCHHHHHHhhcc-CC-ceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHH
Q 029462 24 VFWFATFAMIVEDLRGPFGQ-FG-RLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 81 (193)
Q Consensus 24 ~V~nl~~~~t~~~l~~~F~~-~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~ 81 (193)
|+.-+....+..+|++.+++ |+ .|..|..+.-+ . ..--|||.+....+|.+....
T Consensus 90 ~vF~Vd~kAnK~qIK~AVEklf~VkV~kVNTl~~p-~--g~KKAyV~La~~~dAldvAnk 146 (150)
T 4a17_R 90 MVFYVHNRSTKPQIKSAFEKLYNVKVRSVNTLNTI-T--GNKKAYIRLAADSDSLTLANK 146 (150)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECT-T--SCEEEEEEECSSSCHHHHHHH
T ss_pred EEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcC-C--CcEEEEEEcCCCCcHHHHHHh
Confidence 44445667788888776665 44 56666544322 1 244589999876666665444
No 270
>2od0_A Hypothetical protein VP1028; structural genomics, unknown functi 2, protein structure initiative, midwest center for structu genomics; 1.95A {Vibrio parahaemolyticus} SCOP: d.198.5.2
Probab=27.83 E-value=56 Score=20.94 Aligned_cols=22 Identities=23% Similarity=0.270 Sum_probs=16.4
Q ss_pred CCHHHHHHhhccCCceEEEEEc
Q 029462 32 MIVEDLRGPFGQFGRLKDIYLP 53 (193)
Q Consensus 32 ~t~~~l~~~F~~~G~i~~v~i~ 53 (193)
.+++.|.++|..+|.|..-.+.
T Consensus 4 ~~~~~i~e~l~~lg~i~~r~MF 25 (105)
T 2od0_A 4 PILKDSMKLFEALGTIKSRSMF 25 (105)
T ss_dssp THHHHHHHHHGGGSCCEEEEET
T ss_pred hHHHHHHHHHhccCCceEeecc
Confidence 3567788999999998865443
No 271
>1q8l_A Copper-transporting ATPase 1; metal binding protein; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1s6o_A 1s6u_A
Probab=27.70 E-value=95 Score=18.07 Aligned_cols=56 Identities=13% Similarity=0.113 Sum_probs=39.9
Q ss_pred cEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeC----CHHHHHHHHHHh
Q 029462 21 SRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYI----DPADAADAKYHM 82 (193)
Q Consensus 21 ~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~----~~~~a~~Ai~~l 82 (193)
..|.|.++.-..-...|+..+.....|..+.+... .+.+.|+|. +.++...+|..+
T Consensus 11 ~~~~v~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 70 (84)
T 1q8l_A 11 LKMKVEGMTCHSCTSTIEGKIGKLQGVQRIKVSLD------NQEATIVYQPHLISVEEMKKQIEAM 70 (84)
T ss_dssp EEEEECCTTTCSSCHHHHHHHHTCTTEEEEEECST------TTEEEEEECTTTCCHHHHHHHHHHT
T ss_pred EEEEECCcccHHHHHHHHHHHHcCCCeEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHHc
Confidence 35788888776667778888888888888877543 466788885 345566666654
No 272
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=27.64 E-value=40 Score=23.34 Aligned_cols=56 Identities=7% Similarity=0.082 Sum_probs=33.6
Q ss_pred EEEeCCCCCCCHHHHHHhhcc-CC-ceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHH
Q 029462 23 LVFWFATFAMIVEDLRGPFGQ-FG-RLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 81 (193)
Q Consensus 23 l~V~nl~~~~t~~~l~~~F~~-~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~ 81 (193)
.|+.-+....+..+|++.+++ |+ .|..|..+.-+ . ..--|||.+....+|.+....
T Consensus 81 ~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~-~--g~KKAyV~L~~~~daldvAnk 138 (142)
T 3u5e_X 81 ILVFQVSMKANKYQIKKAVKELYEVDVLKVNTLVRP-N--GTKKAYVRLTADYDALDIANR 138 (142)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHSCCEEEEEEEECT-T--SCEEEEEEECTTCCHHHHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcC-C--CceEEEEEeCCCCcHHHHHHh
Confidence 344445667788887766665 44 56666544322 1 234589999876666655443
No 273
>1aw0_A Menkes copper-transporting ATPase; copper-binding domain, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 2aw0_A
Probab=27.35 E-value=82 Score=17.23 Aligned_cols=55 Identities=20% Similarity=0.155 Sum_probs=36.1
Q ss_pred EEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeC----CHHHHHHHHHHh
Q 029462 22 RLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYI----DPADAADAKYHM 82 (193)
Q Consensus 22 rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~----~~~~a~~Ai~~l 82 (193)
.+.|.++.-..-...|+..+.....|..+.+... .+.+.|.|. +.++...+|..+
T Consensus 6 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 64 (72)
T 1aw0_A 6 VINIDGMTCNSCVQSIEGVISKKPGVKSIRVSLA------NSNGTVEYDPLLTSPETLRGAIEDM 64 (72)
T ss_dssp EEEEECCCHHHHHHHHHHHHHTSTTCCCEEEETT------TTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEECCeecHHHHHHHHHHHhcCCCeEEEEEEcc------CCEEEEEECCCcCCHHHHHHHHHHC
Confidence 4777787655455678888887766766666533 466788886 345556666654
No 274
>3u5c_Y RP50, 40S ribosomal protein S24-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_U* 3j16_D 3u5g_Y
Probab=26.28 E-value=1.6e+02 Score=20.13 Aligned_cols=46 Identities=22% Similarity=0.434 Sum_probs=27.9
Q ss_pred CCCHHHHHHhhcc-CCc---eEEE-EEcCCCCCCCcceEEEEEeCCHHHHHH
Q 029462 31 AMIVEDLRGPFGQ-FGR---LKDI-YLPRDYYTGEPRGFGFVQYIDPADAAD 77 (193)
Q Consensus 31 ~~t~~~l~~~F~~-~G~---i~~v-~i~~~~~~g~~~g~afV~f~~~~~a~~ 77 (193)
.++..+|++-+.. |+. +..| .|......|++.|||.| |++.+.|..
T Consensus 34 Tpsr~eIrekLAk~y~~~~d~VvV~g~rT~fG~gkstGfa~I-Yds~d~akk 84 (135)
T 3u5c_Y 34 NVSKDELREKLAEVYKAEKDAVSVFGFRTQFGGGKSVGFGLV-YNSVAEAKK 84 (135)
T ss_dssp CCCHHHHHHHHHTTTTSCGGGEEEEEEEECTTSSEEEEEEEE-ESSHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCEEEEEeeEeccCCceEEEEEEE-eCCHHHHHh
Confidence 4667888877754 552 2222 34444455667788877 677777654
No 275
>2l3m_A Copper-ION-binding protein; structural genomics, center for structural genomics of infec diseases, csgid, metal binding protein; NMR {Bacillus anthracis}
Probab=26.12 E-value=87 Score=17.10 Aligned_cols=55 Identities=9% Similarity=-0.014 Sum_probs=36.9
Q ss_pred EEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeC----CHHHHHHHHHHh
Q 029462 22 RLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYI----DPADAADAKYHM 82 (193)
Q Consensus 22 rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~----~~~~a~~Ai~~l 82 (193)
.|.|.++.-..-...|+..+.....|..+.+-.. .+.+.|.|. +.++...+|..+
T Consensus 8 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 66 (71)
T 2l3m_A 8 TLQVEGMSCGHCVNAIESSVKELNGVEQVKVQLA------EGTVEVTIDSSVVTLKDIVAVIEDQ 66 (71)
T ss_dssp EEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETT------TTEEEEEEETTTSCHHHHHHHHHHT
T ss_pred EEEECCccCHHHHHHHHHHHHcCCCeEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHHc
Confidence 4788888765556678888888877877776543 456777775 345555666553
No 276
>1p6t_A Potential copper-transporting ATPase; COPA, P-type ATPase, water-soluble region, beta-alpha-beta- beta-alpha-beta fold; NMR {Bacillus subtilis} SCOP: d.58.17.1 d.58.17.1 PDB: 2rml_A
Probab=26.03 E-value=1.4e+02 Score=19.48 Aligned_cols=55 Identities=11% Similarity=0.009 Sum_probs=33.7
Q ss_pred EEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeC----CHHHHHHHHHHh
Q 029462 22 RLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYI----DPADAADAKYHM 82 (193)
Q Consensus 22 rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~----~~~~a~~Ai~~l 82 (193)
.|.|.++.-..-...|+..+.+...|..+.+... .+.+.|+|. +.++...+|..+
T Consensus 77 ~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 135 (151)
T 1p6t_A 77 EFDIEGMTCAACANRIEKRLNKIEGVANAPVNFA------LETVTVEYNPKEASVSDLKEAVDKL 135 (151)
T ss_dssp EEEESSCCSSSHHHHHHHHHTTSSSEEECCEETT------TTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEecCCCCHHHHHHHHHHHhcCCCceEEEEEcc------CCEEEEEECCCCCCHHHHHHHHHHc
Confidence 3666677665556667777777666665555432 456677775 455566666554
No 277
>1cpz_A Protein (COPZ); copper chaperone, metal transport, gene regulation; NMR {Enterococcus hirae} SCOP: d.58.17.1
Probab=25.99 E-value=84 Score=16.88 Aligned_cols=54 Identities=9% Similarity=0.141 Sum_probs=36.7
Q ss_pred EEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCC----HHHHHHHHHH
Q 029462 22 RLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYID----PADAADAKYH 81 (193)
Q Consensus 22 rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~----~~~a~~Ai~~ 81 (193)
.+.|.++.-..-...|+..+.....|..+.+... .+.+.|+|.. .++...++..
T Consensus 3 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~ 60 (68)
T 1cpz_A 3 EFSVKGMSCNHCVARIEEAVGRISGVKKVKVQLK------KEKAVVKFDEANVQATEICQAINE 60 (68)
T ss_dssp EEEESCCCSSSHHHHHHHHHHTSTTEEEEEEETT------TTEEEEEECTTTCCHHHHHHHHHT
T ss_pred EEEECCeeCHHHHHHHHHHHHcCCCeEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHH
Confidence 4678888766667778888888877877776543 4567788863 3445555544
No 278
>3pm0_A Cypib1, cytochrome P450 1B1; CYP1B1, monooxygenase, alpha-naphthoflavone, 17BETA-estradiol, oxidoreductase; HET: HEM BHF; 2.70A {Homo sapiens}
Probab=25.93 E-value=94 Score=25.13 Aligned_cols=48 Identities=13% Similarity=-0.013 Sum_probs=28.7
Q ss_pred EEeCCCCC--CCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHH
Q 029462 24 VFWFATFA--MIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 80 (193)
Q Consensus 24 ~V~nl~~~--~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~ 80 (193)
+|||+..- -....+.++..+||.|..+.+. +.-+|...+.+.++.++.
T Consensus 19 ~iG~~~~~~~~~~~~~~~~~~~yG~i~~~~~g---------~~~~vvv~dp~~i~~il~ 68 (507)
T 3pm0_A 19 LIGNAAAVGQAAHLSFARLARRYGDVFQIRLG---------SCPIVVLNGERAIHQALV 68 (507)
T ss_dssp ---------CCHHHHHHHHHHHHCSEEEEEET---------TEEEEEECSHHHHHHHHT
T ss_pred eeCchhhcCccHHHHHHHHHHHhCCEEEEEEC---------CccEEEECCHHHHHHHHH
Confidence 55665432 1245677888899999887763 345677788888888773
No 279
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=25.80 E-value=37 Score=20.22 Aligned_cols=10 Identities=20% Similarity=0.408 Sum_probs=8.6
Q ss_pred ceEEEEEeCC
Q 029462 62 RGFGFVQYID 71 (193)
Q Consensus 62 ~g~afV~f~~ 71 (193)
.|.++|.|.+
T Consensus 41 ~gtC~V~F~D 50 (66)
T 2eqj_A 41 KQSCFIIFED 50 (66)
T ss_dssp TTEEEEEETT
T ss_pred CcEEEEEEcc
Confidence 6899999975
No 280
>1opz_A Potential copper-transporting ATPase; mutation, folding, abbab fold, hydrolase; NMR {Bacillus subtilis} SCOP: d.58.17.1 PDB: 1oq3_A 1oq6_A
Probab=25.77 E-value=91 Score=17.18 Aligned_cols=56 Identities=11% Similarity=-0.029 Sum_probs=38.2
Q ss_pred cEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeC----CHHHHHHHHHHh
Q 029462 21 SRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYI----DPADAADAKYHM 82 (193)
Q Consensus 21 ~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~----~~~~a~~Ai~~l 82 (193)
..+.|.++.-..-...|+..+.....|..+.+... .+.+.|.|. +.++...++..+
T Consensus 8 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 67 (76)
T 1opz_A 8 IAMQVSGMTCAACAARIEKGLKRMPGVTDANVNLA------TETVNVIYDPAETGTAAIQEKIEKL 67 (76)
T ss_dssp EEEEEESCCSTTHHHHHHHHHHTSTTEEEEEEEGG------GTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEEECCcccHHHHHHHHHHHhcCCCeEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHHC
Confidence 34788888776667778888888777777766532 566778875 345556666554
No 281
>2c60_A Human mitogen-activated protein kinase kinase kinase 3 isoform 2; MAP3K3, MAP/ERK kinase kinase 3, MAPKKK3, MEKK3, serine threonine phosphorylation; HET: MSE; 1.25A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_B
Probab=25.75 E-value=87 Score=20.36 Aligned_cols=53 Identities=15% Similarity=0.048 Sum_probs=36.6
Q ss_pred EeCCCCCCCHHHHHHhhc-cCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCc
Q 029462 25 FWFATFAMIVEDLRGPFG-QFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGY 85 (193)
Q Consensus 25 V~nl~~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~ 85 (193)
|--++..+.-++|+.-.. .||...++..+.+ --.|-..+.+|..+||+.|+-.
T Consensus 44 Iiqf~RPvkf~dl~qkv~~afGq~ldl~y~nn--------EL~IPL~~Q~DLDkAvelLDrs 97 (111)
T 2c60_A 44 IIAFSRPVKYEDVEHKVTTVFGQPLDLHYMNN--------ELSILLKNQDDLDKAIDILDRS 97 (111)
T ss_dssp EEEECSSCCHHHHHHHHHHHHSSCCEEEEECS--------SCEEECCSHHHHHHHHHHHHHC
T ss_pred EEecCCCccHHHHHHHHHHHhCCeeeeEEecc--------eEEEecccHHHHHHHHHHhccC
Confidence 334566677777665443 5787777766632 2467788999999999987643
No 282
>2okq_A Hypothetical protein YBAA; YBAA protein, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 1.80A {Shigella flexneri} SCOP: d.58.4.18
Probab=25.42 E-value=1.6e+02 Score=20.24 Aligned_cols=45 Identities=18% Similarity=0.190 Sum_probs=29.1
Q ss_pred HHHhhccCCceEEEEEcCC-----CC----------CCCcceEEEEEeCCHHHHHHHHHH
Q 029462 37 LRGPFGQFGRLKDIYLPRD-----YY----------TGEPRGFGFVQYIDPADAADAKYH 81 (193)
Q Consensus 37 l~~~F~~~G~i~~v~i~~~-----~~----------~g~~~g~afV~f~~~~~a~~Ai~~ 81 (193)
..++|..||.+.-+...-+ +. .+..--|.+|+|.+.+...++..+
T Consensus 50 a~~vfke~GAl~~vEcWgdDVp~Gk~TsF~~AVkak~dEtVVFSWi~wPsKa~RDa~~~k 109 (141)
T 2okq_A 50 AAPLFKEFGALRIVECWASDVPDGKVTDFRMAVKAEENEEVVFSWIEYPSKEVRDAANQK 109 (141)
T ss_dssp HHHHHHHTTCSEEEEEEEEECCCCSSCCHHHHTTCCTTEEEEEEEEEESCHHHHHHHHHH
T ss_pred HHHHHHHhCCeeeeeeecccCCCCcccCHHHHhcCCCCCEEEEEEEEcCCHHHHHHHHHH
Confidence 3468999997665443221 11 133345899999999888877644
No 283
>1yjr_A Copper-transporting ATPase 1; metallochaperone, protein-protein interaction, copper(I), metal homeostasis, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1yjt_A 1yju_A 1yjv_A
Probab=24.99 E-value=95 Score=17.13 Aligned_cols=56 Identities=14% Similarity=0.104 Sum_probs=38.5
Q ss_pred cEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCC----HHHHHHHHHHh
Q 029462 21 SRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYID----PADAADAKYHM 82 (193)
Q Consensus 21 ~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~----~~~a~~Ai~~l 82 (193)
..+.|.++.-..-...|+..+.....|..+.+... .+.+.|.|.. .++...++..+
T Consensus 6 ~~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 65 (75)
T 1yjr_A 6 LELVVRGMTCASCVHKIESSLTKHRGILYCSVALA------TNKAHIKYDPEIIGPRDIIHTIESL 65 (75)
T ss_dssp EEEEEETCCTTTHHHHHHHHHTTSTTEEEEEEETT------TTEEEEEECTTTTHHHHHHHHHHHH
T ss_pred EEEEECCcccHHHHHHHHHHHHcCCCEEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHHc
Confidence 45788898877667888899988877887777543 4667888863 23344555443
No 284
>2exu_A Transcription initiation protein SPT4/SPT5; helixs surrounding beta sheet; 2.23A {Saccharomyces cerevisiae}
Probab=24.85 E-value=53 Score=24.10 Aligned_cols=34 Identities=6% Similarity=-0.000 Sum_probs=26.1
Q ss_pred eEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCc
Q 029462 47 LKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGY 85 (193)
Q Consensus 47 i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~ 85 (193)
|..+.... .-+||-|||=.+..++.+||..|.+.
T Consensus 139 I~Si~~~d-----~lkGYIyVEA~~~~~V~~ai~Gi~~v 172 (200)
T 2exu_A 139 ILSIFQRD-----NYTGRIYIEAPKQSVIEKFCNGVPDI 172 (200)
T ss_dssp CCEEECCT-----TSTTEEEEECSCHHHHHHHHTTCTTE
T ss_pred EEEEEecC-----CCcEEEEEEECCHHHHHHHHhhhhhh
Confidence 55655432 24899999999999999999877664
No 285
>2qyc_A Ferredoxin-like protein; stress responsive A/B barrel domain, structural genomics, JO center for structural genomics, JCSG; HET: MSE; 1.90A {Bordetella bronchiseptica RB50}
Probab=24.51 E-value=1.4e+02 Score=18.75 Aligned_cols=54 Identities=11% Similarity=0.015 Sum_probs=32.4
Q ss_pred EEEeCCCCCCCHHHHHHhhc-------cCCceEEEEEcCCCCCCCcce--EE-EEEeCCHHHHHH
Q 029462 23 LVFWFATFAMIVEDLRGPFG-------QFGRLKDIYLPRDYYTGEPRG--FG-FVQYIDPADAAD 77 (193)
Q Consensus 23 l~V~nl~~~~t~~~l~~~F~-------~~G~i~~v~i~~~~~~g~~~g--~a-fV~f~~~~~a~~ 77 (193)
|.+-.|...++++++.++.. +...|..+.+-.+.. +...| ++ +++|++.++.+.
T Consensus 8 iVlfk~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~-~~~~~~~~~~~~~F~s~e~l~~ 71 (103)
T 2qyc_A 8 VVMMEFDDGIDAGFFRTVDEYVARMKRECDGLLLYHFGENVA-ARSQGYTHATSSAFVDAAAHDA 71 (103)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHHHHHHSTTEEEEEEEECCC-TTCTTCCEEEEEEESSHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHhhhcCCCeEEEEECCCCC-CCCCCccEEEEEEECCHHHHHH
Confidence 56667888888766554433 355677777655432 33233 34 468888776653
No 286
>3bgu_A Ferredoxin-like protein of unknown function; ferredoxin-like fold, stress responsive A/B barrel domain, S genomics; 1.50A {Thermobifida fusca}
Probab=24.42 E-value=1.5e+02 Score=19.23 Aligned_cols=54 Identities=7% Similarity=0.028 Sum_probs=31.6
Q ss_pred EEEEeCCCCCCCHHHHHHhhcc-------CCceEEEEEcCCCCCCCcce--EE-EEEeCCHHHHH
Q 029462 22 RLVFWFATFAMIVEDLRGPFGQ-------FGRLKDIYLPRDYYTGEPRG--FG-FVQYIDPADAA 76 (193)
Q Consensus 22 rl~V~nl~~~~t~~~l~~~F~~-------~G~i~~v~i~~~~~~g~~~g--~a-fV~f~~~~~a~ 76 (193)
-|.+-.|...++++++.++... ...|..+.+-.+.. +...| ++ +++|++.++.+
T Consensus 24 HIVlfklK~~~s~e~~~~~~~~l~~L~~~ip~i~~~~~G~~~s-~~~~g~d~~l~~~F~s~edl~ 87 (116)
T 3bgu_A 24 HIALFRWNDTVTPDQVEQVITALSKLPAAIPELKNYAFGADLG-LAAGNYDFAVVADLDGEDGFR 87 (116)
T ss_dssp EEEEEEECTTCCHHHHHHHHHHHHHCCCCCTTEEEEEEEECCS-CSTTCCSEEEEEEEEHHHHHH
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHhhcCCceEEEEEccCCC-CCCCCeeEEEEEEECCHHHHH
Confidence 3666788888888765554432 44566666654432 33233 44 45777766654
No 287
>1o57_A PUR operon repressor; purine operon repressor, helix-turn-helix domain, phosphoribosyltranseferases, domain recombination, DNA binding; HET: EPE P6G 2PE PG4 1PE; 2.20A {Bacillus subtilis} SCOP: a.4.5.40 c.61.1.1 PDB: 1p4a_A*
Probab=24.40 E-value=1.7e+02 Score=22.57 Aligned_cols=41 Identities=17% Similarity=0.301 Sum_probs=29.6
Q ss_pred HHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHh
Q 029462 37 LRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 82 (193)
Q Consensus 37 l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l 82 (193)
|++.|+.+|--.-..+ .|...|+-||-|-..++|+.+++.|
T Consensus 47 ~~~~~~~~~~~~~~~~-----~ga~gg~~~~~~~~~~~a~~~~~~l 87 (291)
T 1o57_A 47 IKQTFEQQGIGTLLTV-----PGAAGGVKYIPKMKQAEAEEFVQTL 87 (291)
T ss_dssp HHHHHHHTTSEEEEEE-----CSTTCEEEEEECCCHHHHHHHHHHH
T ss_pred HHHHHHhcCCceEEEe-----cCCCCceEEcccCCHHHHHHHHHHH
Confidence 4577888764332222 5677889999999999998887665
No 288
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.07 E-value=13 Score=21.82 Aligned_cols=10 Identities=20% Similarity=0.315 Sum_probs=8.1
Q ss_pred ceEEEEEeCC
Q 029462 62 RGFGFVQYID 71 (193)
Q Consensus 62 ~g~afV~f~~ 71 (193)
+..|||.|++
T Consensus 35 ~~~ClV~FeD 44 (63)
T 2e5q_A 35 KQSCLVTFED 44 (63)
T ss_dssp TSEEEEEETT
T ss_pred CCEEEEEEcc
Confidence 6789999975
No 289
>2ofg_X Zinc-transporting ATPase; ferredoxin-like fold, beta-alpha-beta-BETA-alpha-beta, struc genomics, hydrolase, membrane protein; NMR {Synechocystis SP} PDB: 2ofh_X
Probab=24.00 E-value=1.4e+02 Score=18.75 Aligned_cols=56 Identities=7% Similarity=0.009 Sum_probs=40.1
Q ss_pred cEEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCC----HHHHHHHHHHh
Q 029462 21 SRLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYID----PADAADAKYHM 82 (193)
Q Consensus 21 ~rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~----~~~a~~Ai~~l 82 (193)
..|.|.++.-..-...|+..+...-.|..+.+... .+.+.|+|.. .++...+|..+
T Consensus 10 ~~l~v~Gm~C~~Ca~~Ie~~L~~~~GV~~v~v~~~------~~~~~V~~~~~~~~~~~i~~~i~~~ 69 (111)
T 2ofg_X 10 QQMQVGGMDCTSCKLKIEGSLERLKGVAEASVTVA------TGRLTVTYDPKQVSEITIQERIAAL 69 (111)
T ss_dssp EEEEESCCCGGGTHHHHHHHHTTSSSEEEEEEETT------TTEEEEEECTTTCSHHHHHHHHHTT
T ss_pred EEEEECCcCCHHHHHHHHHHHHcCCCeeEEEEECC------CCEEEEEECCCCCCHHHHHHHHHHc
Confidence 34788888877778889999998877887777543 4678888863 34555666543
No 290
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A*
Probab=23.93 E-value=59 Score=27.94 Aligned_cols=48 Identities=8% Similarity=0.018 Sum_probs=32.4
Q ss_pred HHHHHhhc----cCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhC
Q 029462 35 EDLRGPFG----QFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMD 83 (193)
Q Consensus 35 ~~l~~~F~----~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~ 83 (193)
-+|..+|. .+|-|..+.+...+.. .....+++.|.+.++|.+|+..+.
T Consensus 288 ~dl~~~~~GseGtlGIIT~~tlrl~p~p-~~~~~~~~~f~~~~~a~~~~~~~~ 339 (584)
T 2uuu_A 288 INYKHIILGSEGTLGIITEAVMKVHAVP-QAVEYYGFLFPTFAHAVSALQQIR 339 (584)
T ss_dssp CCTHHHHTTCTTSSCEEEEEEEECEECC-SEEEEEEEEESSHHHHHHHHHHHH
T ss_pred cchhhhhccCCCCcEEEEEEEEEEEecc-cceEEEEEEcCCHHHHHHHHHHHH
Confidence 34555543 5678888877654422 224577899999999998887654
No 291
>1osd_A MERP, hypothetical protein MERP; mercury resistance, metal binding protein, perisplasm, structural genomics; 2.00A {Cupriavidus metallidurans} SCOP: d.58.17.1 PDB: 1afi_A 1afj_A 2hqi_A
Probab=23.78 E-value=98 Score=16.88 Aligned_cols=55 Identities=7% Similarity=-0.010 Sum_probs=37.7
Q ss_pred EEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeC----CHHHHHHHHHHh
Q 029462 22 RLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYI----DPADAADAKYHM 82 (193)
Q Consensus 22 rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~----~~~~a~~Ai~~l 82 (193)
.+.|.++.-..-...|+..+.....|..+.+... .+.+.|+|. +.++...+|..+
T Consensus 6 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 64 (72)
T 1osd_A 6 TLSVPGMTCSACPITVKKAISKVEGVSKVDVTFE------TRQAVVTFDDAKTSVQKLTKATADA 64 (72)
T ss_dssp EEECTTCCSTTHHHHHHHHHHTSTTEEEEEEETT------TTEEEEEEETTTCCHHHHHHHHHHT
T ss_pred EEEECCeEcHHHHHHHHHHHhcCCCeEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHhc
Confidence 4677777766666778888888877887776543 456778875 345556666553
No 292
>3cjk_B Copper-transporting ATPase 1; HAH1, ATP7B, menkes disease, metal homeostasis, chaperone, ION transport, metal- binding, alternative splicing; 1.80A {Homo sapiens} PDB: 2k1r_A
Probab=23.37 E-value=1e+02 Score=17.06 Aligned_cols=55 Identities=15% Similarity=0.107 Sum_probs=37.2
Q ss_pred EEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCC----HHHHHHHHHHh
Q 029462 22 RLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYID----PADAADAKYHM 82 (193)
Q Consensus 22 rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~----~~~a~~Ai~~l 82 (193)
.+.|.++.-..-...|+..+.....|..+.+... .+.+.|.|.. .++...+|..+
T Consensus 5 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 63 (75)
T 3cjk_B 5 TISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLE------EKNATIIYDPKLQTPKTLQEAIDDM 63 (75)
T ss_dssp EEEECCCCSHHHHHHHHHHHHTSTTEEEEEEETT------TTEEEEEECTTTCCHHHHHHHHHHT
T ss_pred EEEECCccCHHHHHHHHHHHhcCCCeEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHHc
Confidence 4677777665556778888888877877776543 4667888853 45556666554
No 293
>2crl_A Copper chaperone for superoxide dismutase; SOD1, familial ALS, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.32 E-value=1.4e+02 Score=18.42 Aligned_cols=53 Identities=9% Similarity=0.093 Sum_probs=34.6
Q ss_pred EEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeC-CHHHHHHHHHH
Q 029462 22 RLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYI-DPADAADAKYH 81 (193)
Q Consensus 22 rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~-~~~~a~~Ai~~ 81 (193)
.|.|. +.-..-...|+..+.+...|..+.+-.. .+.+.|+|. +.++..++|..
T Consensus 22 ~l~V~-m~C~~C~~~Ie~aL~~l~GV~~v~vdl~------~~~~~V~~~~~~~~i~~~i~~ 75 (98)
T 2crl_A 22 EFAVQ-MTCQSCVDAVRKSLQGVAGVQDVEVHLE------DQMVLVHTTLPSQEVQALLEG 75 (98)
T ss_dssp EEEEC-CCSHHHHHHHHHTTTTCTTCCEEEEETT------TTEEEEEESSCHHHHHHHHHT
T ss_pred EEEEe-eECHHHHHHHHHHHHcCCCceEEEEECC------CCEEEEEEeCCHHHHHHHHHH
Confidence 35666 6544446778999998877887777543 456667774 45556666654
No 294
>3ced_A Methionine import ATP-binding protein METN 2; ABC transporter, NIL domain, structur genomics, PSI-2, protein structure initiative; 2.15A {Staphylococcus aureus subsp} SCOP: d.58.18.13
Probab=22.77 E-value=74 Score=20.12 Aligned_cols=55 Identities=7% Similarity=-0.067 Sum_probs=32.1
Q ss_pred CCCCHHHHHHhhccCCceEEEEE-cCCCCCCCcceEEEEEeC--CHHHHHHHHHHhCC
Q 029462 30 FAMIVEDLRGPFGQFGRLKDIYL-PRDYYTGEPRGFGFVQYI--DPADAADAKYHMDG 84 (193)
Q Consensus 30 ~~~t~~~l~~~F~~~G~i~~v~i-~~~~~~g~~~g~afV~f~--~~~~a~~Ai~~l~g 84 (193)
..+.+..|-++..+||.-.+|.. ..+...+..-|.-+|++. +.++.++|+..|..
T Consensus 30 ~~~~~PvIs~l~~~~~v~vnIL~g~I~~i~~~~~G~L~v~l~G~~~~~~~~ai~~L~~ 87 (98)
T 3ced_A 30 STTTEPIVSSLSTAYDIKINILEANIKNTKNGTVGFLVLHIPYISSVDFGKFEKELIE 87 (98)
T ss_dssp ESCHHHHHHHHHHHHTCCCEEEEEEEEEETTEEEEEEEEEESCCCHHHHHHHHHHHHH
T ss_pred CccCchHHHHHHHHHCCcEEEEEEEeEEeCCEeEEEEEEEEeCCCHHHHHHHHHHHHH
Confidence 34556667777777764333211 111123345677788887 46777888877753
No 295
>1ytr_A Bacteriocin plantaricin A; antibiotic, pheromone, amphipathic helix, micelle; NMR {Synthetic}
Probab=22.46 E-value=49 Score=15.17 Aligned_cols=12 Identities=17% Similarity=0.664 Sum_probs=9.5
Q ss_pred HHHHHHhhccCC
Q 029462 34 VEDLRGPFGQFG 45 (193)
Q Consensus 34 ~~~l~~~F~~~G 45 (193)
..+++.+|.++|
T Consensus 14 ikqvkklfkkwg 25 (26)
T 1ytr_A 14 IKQVKKLFKKWG 25 (26)
T ss_dssp HHHHHHHHTTCC
T ss_pred HHHHHHHHHHcC
Confidence 467888998876
No 296
>3n9y_A Cholesterol SIDE-chain cleavage enzyme; cytochrome P450, cholesterol SIDE chain cleavage, structural genomics, structural genomics consortium, SGC; HET: HEM CLR; 2.10A {Homo sapiens} PDB: 3n9z_A* 3na1_A* 3na0_A* 3mzs_A*
Probab=22.14 E-value=1.3e+02 Score=24.20 Aligned_cols=38 Identities=24% Similarity=0.147 Sum_probs=29.1
Q ss_pred HHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHH
Q 029462 34 VEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 80 (193)
Q Consensus 34 ~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~ 80 (193)
...+.++..+||.|..+.+. +.-+|.+.+.+.++.++.
T Consensus 35 ~~~~~~l~~kYG~i~~~~~g---------~~~~vvv~dp~~~~~il~ 72 (487)
T 3n9y_A 35 HLHHVQNFQKYGPIYREKLG---------NVESVYVIDPEDVALLFK 72 (487)
T ss_dssp HHHHHHHHHHHCSEEEEEET---------TEEEEEECCHHHHHHHHH
T ss_pred hHHHHHHHHHcCceeeccCC---------CCCEEEEcCHHHHHHHHH
Confidence 45677888999999988763 234677889999988774
No 297
>1kvi_A Copper-transporting ATPase 1; menkes, Cu-protein, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1kvj_A
Probab=21.80 E-value=1.2e+02 Score=17.09 Aligned_cols=55 Identities=15% Similarity=0.107 Sum_probs=38.6
Q ss_pred EEEEeCCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCC----HHHHHHHHHHh
Q 029462 22 RLVFWFATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYID----PADAADAKYHM 82 (193)
Q Consensus 22 rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~----~~~a~~Ai~~l 82 (193)
.+.|.++.-..-...|+..+.....|..+.+... .+.+.|+|.. .++...+|..+
T Consensus 11 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 69 (79)
T 1kvi_A 11 TISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLE------EKNATIIYDPKLQTPKTLQEAIDDM 69 (79)
T ss_dssp EEEECCCCSTTTHHHHHHHHHHSSSCCCEEEEGG------GTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEECCccCHHHHHHHHHHHhcCCCeEEEEEEcc------CCEEEEEECCCCCCHHHHHHHHHHC
Confidence 4788898877777888888888766766665432 5677888853 45566666654
No 298
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=21.67 E-value=1.7e+02 Score=19.08 Aligned_cols=47 Identities=15% Similarity=0.271 Sum_probs=34.9
Q ss_pred CHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHH-HHhC
Q 029462 33 IVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAK-YHMD 83 (193)
Q Consensus 33 t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai-~~l~ 83 (193)
.-+.+.+.+..+.+|..|... +|..--++.|.+.+.++....+ ..|.
T Consensus 76 ~~~~~~~~l~~~~~v~~~~~~----~G~~d~~~~v~~~d~~~l~~~~~~~l~ 123 (141)
T 1i1g_A 76 KLFEVAEKLKEYDFVKELYLS----SGDHMIMAVIWAKDGEDLAEIISNKIG 123 (141)
T ss_dssp GHHHHHHHHHHSTTEEEECCC----SSSSSEEEEEEESSHHHHHHHHHHTTT
T ss_pred hHHHHHHHHhcCCCeEEEEEe----cCCCCEEEEEEECCHHHHHHHHHHHhh
Confidence 346677777888999988765 5555567788999999998887 4444
No 299
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=21.51 E-value=1.9e+02 Score=19.32 Aligned_cols=53 Identities=6% Similarity=0.067 Sum_probs=39.6
Q ss_pred CCCCCCCHHHHHHhhccCCceEEEEEcCCCCCCCcceEEEEEeCCHHHHHHHHHHhCC
Q 029462 27 FATFAMIVEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDG 84 (193)
Q Consensus 27 nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g 84 (193)
.++. ...+++.+.+..+-+|..|..+ +|..--++.|.+.+.++....+..|..
T Consensus 74 ~~~~-~~~~~~~~~l~~~p~V~~~~~~----tG~~d~~~~v~~~d~~~l~~~~~~l~~ 126 (151)
T 2cyy_A 74 KVKA-GKYSEVASNLAKYPEIVEVYET----TGDYDMVVKIRTKNSEELNNFLDLIGS 126 (151)
T ss_dssp EECT-TCHHHHHHHHHTCTTEEEEEEC----SSSSSEEEEEEESSHHHHHHHHHHHHT
T ss_pred EECc-ccHHHHHHHHhcCCCeeEeeEe----cCCCCEEEEEEECCHHHHHHHHHHHhC
Confidence 4443 3457788888999999999886 555556778899999998888765543
No 300
>3bde_A MLL5499 protein; stress responsive A/B barrel domain, structural genomics, JO center for structural genomics, JCSG; 1.79A {Mesorhizobium loti}
Probab=21.40 E-value=1.8e+02 Score=19.04 Aligned_cols=56 Identities=13% Similarity=0.075 Sum_probs=32.6
Q ss_pred EEEEeCCCCCCCHHHHHHhh-------ccCCceEEEEEcCCCCCCCcceEE-EEEeCCHHHHHH
Q 029462 22 RLVFWFATFAMIVEDLRGPF-------GQFGRLKDIYLPRDYYTGEPRGFG-FVQYIDPADAAD 77 (193)
Q Consensus 22 rl~V~nl~~~~t~~~l~~~F-------~~~G~i~~v~i~~~~~~g~~~g~a-fV~f~~~~~a~~ 77 (193)
-|.+..|...++++++.++. .+...|..+.+-.+......-.++ +++|++.++.+.
T Consensus 23 HIVlfklK~~~~~e~~~~~~~~l~~L~~~Ip~I~~~~vG~~~~~~~~~d~~l~~~F~s~edl~~ 86 (120)
T 3bde_A 23 HTVVFTLKHASHSLEEKRFLVDAKKILSAIRGVTHFEQLRQISPKIDYHFGFSMEFADQAAYTR 86 (120)
T ss_dssp EEEEEEESSCTTCHHHHHHHHHHHHHHHTSTTCEEEEEEECCCSSSCCCEEEEEEESSHHHHHH
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHhhccCCceEEEEEccCCCCCCCccEEEEEEECCHHHHHH
Confidence 36666787777766654443 345567777765543221113455 468888766543
No 301
>2qrr_A Methionine import ATP-binding protein METN; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 1.71A {Vibrio parahaemolyticus} SCOP: d.58.18.13
Probab=21.39 E-value=1.6e+02 Score=18.44 Aligned_cols=62 Identities=13% Similarity=0.057 Sum_probs=36.2
Q ss_pred EEEEeCCCCCCCHHHHHHhhccCCceEEEEEc-CCCCCCCcceEEEEEeC-CHHHHHHHHHHhC
Q 029462 22 RLVFWFATFAMIVEDLRGPFGQFGRLKDIYLP-RDYYTGEPRGFGFVQYI-DPADAADAKYHMD 83 (193)
Q Consensus 22 rl~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~-~~~~~g~~~g~afV~f~-~~~~a~~Ai~~l~ 83 (193)
.|.|.-....+.+..|-++..+||--.+|..- .+...+..-|.-+|++. +.++.++|+..|.
T Consensus 25 lv~l~f~g~~~~~pvis~l~~~~~v~vnIl~g~i~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~ 88 (101)
T 2qrr_A 25 LVRMEFTGATVDAPLMSQISRKYNIDVSILSSDLDYAGGVKFGMMVAELFGNEQDDSAAIEYLR 88 (101)
T ss_dssp EEEEEECTTSCSSCHHHHHHHHSCCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHH
T ss_pred EEEEEEcCCCcCchHHHHHHHHhCCCEEEEEeeeeEcCCeeEEEEEEEEeCCHHHHHHHHHHHH
Confidence 35555445556677788888888754433211 11123344577778776 3556677777764
No 302
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=21.37 E-value=44 Score=20.91 Aligned_cols=52 Identities=6% Similarity=0.098 Sum_probs=32.5
Q ss_pred EEEeCCCCCCCHHHHHHhhcc-CC-ceEEEEEcCCCCCCCcceEEEEEeCCHHHHHH
Q 029462 23 LVFWFATFAMIVEDLRGPFGQ-FG-RLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 77 (193)
Q Consensus 23 l~V~nl~~~~t~~~l~~~F~~-~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~ 77 (193)
.|+-.+...++..+|++.+++ |+ .|..|..+.-+ ...--|||++..-.+|..
T Consensus 24 ~~~F~V~~~AnK~qIK~ave~lf~VkV~~VNT~~~~---~~~KKA~VtL~~g~~aid 77 (85)
T 1vq8_S 24 KLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTM---DGEKKAVVRLSEDDDAQE 77 (85)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECT---TSSEEEEEEECTTSCHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCCceEEEeeecC---CCceEEEEEECCCCcHHH
Confidence 455556778898888877765 45 56666544332 123468999976555433
No 303
>3bn7_A Ferredoxin-like protein; stress responsive A/B barre structural genomics, joint center for structural genomics; HET: MSE; 1.64A {Caulobacter crescentus}
Probab=21.27 E-value=1.8e+02 Score=18.99 Aligned_cols=55 Identities=9% Similarity=0.048 Sum_probs=32.4
Q ss_pred EEEEeCCCCCCCHHHHHHhhc------cCCceEEEEEcCCCCC----CCcce--EE-EEEeCCHHHHH
Q 029462 22 RLVFWFATFAMIVEDLRGPFG------QFGRLKDIYLPRDYYT----GEPRG--FG-FVQYIDPADAA 76 (193)
Q Consensus 22 rl~V~nl~~~~t~~~l~~~F~------~~G~i~~v~i~~~~~~----g~~~g--~a-fV~f~~~~~a~ 76 (193)
-|.+..|...++++++.++.. +...|..+.+-.+..+ +...| +| +++|++.++.+
T Consensus 23 HIVlfklK~~~~~~~~~~~~~~l~~L~~Ip~i~~~~vG~~~s~e~R~~~~~g~d~~l~~~F~s~edl~ 90 (120)
T 3bn7_A 23 HQVFFWLKNPGDKADRDKLIAGLKALKAIDVIQQLHVGVPAATEKRDVVDNSYDVSELMVFKSVEDQK 90 (120)
T ss_dssp EEEEEEESSTTCHHHHHHHHHHHHGGGGSTTCSEEEEECCCCCCCCTTCCCCCSEEEEEEESSHHHHH
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHhccCCCCeEEEEEccCCCcccccccCCCccEEEEEEECCHHHHH
Confidence 366678888888776544432 3455667766555432 22334 44 46888876654
No 304
>2k5n_A Putative cold-shock protein; GFT protein structure, PSI, nesgc, OB fold, cold shock structural genomics; NMR {Pectobacterium atrosepticum}
Probab=21.11 E-value=49 Score=19.97 Aligned_cols=10 Identities=40% Similarity=1.039 Sum_probs=7.8
Q ss_pred ceEEEEEeCC
Q 029462 62 RGFGFVQYID 71 (193)
Q Consensus 62 ~g~afV~f~~ 71 (193)
+||+||+-.+
T Consensus 14 KGfGFI~~~d 23 (74)
T 2k5n_A 14 KGFGFIKDEN 23 (74)
T ss_dssp TTEEEEEESS
T ss_pred CCeEEEecCC
Confidence 8899988654
No 305
>2jsh_A Appetite-regulating hormone, obestatin; micellar solution, DPC, SDS, alternative splicing, amidation, lipoprotein, secreted; NMR {Synthetic} PDB: 2jsj_A
Probab=20.45 E-value=43 Score=15.98 Aligned_cols=22 Identities=23% Similarity=0.235 Sum_probs=13.3
Q ss_pred CCCCCCCHHHHHHhhccCCceE
Q 029462 27 FATFAMIVEDLRGPFGQFGRLK 48 (193)
Q Consensus 27 nl~~~~t~~~l~~~F~~~G~i~ 48 (193)
|.|+++--.--.+.|++||.+.
T Consensus 2 naPFeiGi~ls~~~y~~yG~~L 23 (26)
T 2jsh_A 2 NAPFDVGIKLSGAQYQQHGRAL 23 (26)
T ss_dssp CSCSSTTGGGHHHHCSCSSSCC
T ss_pred CCceeEeeEecHHHHHHHhHHh
Confidence 4455555444456688888753
No 306
>3ulj_A LIN28B, DNA-binding protein; beta barrel, cold shock domain fold, nucleic acid binding, D binding protein; 1.06A {Silurana} PDB: 4a4i_A
Probab=20.29 E-value=60 Score=20.49 Aligned_cols=7 Identities=57% Similarity=1.369 Sum_probs=6.3
Q ss_pred ceEEEEE
Q 029462 62 RGFGFVQ 68 (193)
Q Consensus 62 ~g~afV~ 68 (193)
+||+||+
T Consensus 20 KGfGFI~ 26 (90)
T 3ulj_A 20 MGFGFIS 26 (90)
T ss_dssp TTEEEEE
T ss_pred CCeEEeE
Confidence 8999996
No 307
>4aj5_1 SKA3, spindle and kinetochore-associated protein 3; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=20.08 E-value=32 Score=22.28 Aligned_cols=12 Identities=25% Similarity=0.678 Sum_probs=8.8
Q ss_pred HHHHHHhhccCC
Q 029462 34 VEDLRGPFGQFG 45 (193)
Q Consensus 34 ~~~l~~~F~~~G 45 (193)
-..|+++|++||
T Consensus 90 I~~ire~fqKYG 101 (101)
T 4aj5_1 90 IMKIREYFQKYG 101 (101)
T ss_dssp HHHHHHHHHHC-
T ss_pred HHHHHHHHHHcC
Confidence 356889999997
Done!