BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 029463
         (193 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2ZAI|A Chain A, Crystal Structure Of The Soluble Domain Of Stt3 From P.
           Furiosus
 pdb|2ZAI|B Chain B, Crystal Structure Of The Soluble Domain Of Stt3 From P.
           Furiosus
 pdb|2ZAI|C Chain C, Crystal Structure Of The Soluble Domain Of Stt3 From P.
           Furiosus
 pdb|2ZAI|D Chain D, Crystal Structure Of The Soluble Domain Of Stt3 From P.
           Furiosus
          Length = 497

 Score = 27.3 bits (59), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 134 TELARTLKGTDTCTAANAFCLQSDISVALGFAGFLFIGVSSLLS-GFRVACFIING 188
           T   +T+KGT TC+  NAF     ++  +G   +  +  ++ +   F V    I G
Sbjct: 176 TPSGKTIKGTGTCSDGNAFPYVLHLTPTIGVLAYYKVATANFIKLAFGVPASTIPG 231


>pdb|2ZAG|A Chain A, Crystal Structure Of The Semet-Substituted Soluble Domain
           Of Stt3 From P. Furiosus
 pdb|2ZAG|B Chain B, Crystal Structure Of The Semet-Substituted Soluble Domain
           Of Stt3 From P. Furiosus
 pdb|2ZAG|C Chain C, Crystal Structure Of The Semet-Substituted Soluble Domain
           Of Stt3 From P. Furiosus
 pdb|2ZAG|D Chain D, Crystal Structure Of The Semet-Substituted Soluble Domain
           Of Stt3 From P. Furiosus
          Length = 497

 Score = 27.3 bits (59), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 134 TELARTLKGTDTCTAANAFCLQSDISVALGFAGFLFIGVSSLLS-GFRVACFIING 188
           T   +T+KGT TC+  NAF     ++  +G   +  +  ++ +   F V    I G
Sbjct: 176 TPSGKTIKGTGTCSDGNAFPYVLHLTPTIGVLAYYKVATANFIKLAFGVPASTIPG 231


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.329    0.139    0.432 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,063,579
Number of Sequences: 62578
Number of extensions: 171158
Number of successful extensions: 441
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 438
Number of HSP's gapped (non-prelim): 3
length of query: 193
length of database: 14,973,337
effective HSP length: 93
effective length of query: 100
effective length of database: 9,153,583
effective search space: 915358300
effective search space used: 915358300
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 49 (23.5 bits)