Query 029463
Match_columns 193
No_of_seqs 113 out of 486
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 13:19:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029463.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029463hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01569 A_tha_TIGR01569 plan 100.0 2.7E-37 5.7E-42 247.8 15.7 139 39-181 1-154 (154)
2 PF04535 DUF588: Domain of unk 100.0 1.8E-34 3.9E-39 229.2 15.4 136 32-169 1-149 (149)
3 PF01284 MARVEL: Membrane-asso 98.6 3.1E-06 6.8E-11 64.9 13.5 134 38-175 6-143 (144)
4 KOG4016 Synaptic vesicle prote 58.2 1.2E+02 0.0026 26.0 14.7 137 39-188 26-173 (233)
5 PF09788 Tmemb_55A: Transmembr 36.2 80 0.0017 27.6 5.0 74 14-97 175-249 (256)
6 PF06376 DUF1070: Protein of u 24.5 94 0.002 18.9 2.5 16 117-132 13-28 (34)
7 PHA02673 ORF109 EEV glycoprote 20.0 3.3E+02 0.0071 22.3 5.5 29 20-50 16-45 (161)
8 PHA03093 EEV glycoprotein; Pro 19.8 1.7E+02 0.0036 24.5 3.9 28 21-48 17-46 (185)
9 PF06653 Claudin_3: Tight junc 19.7 2.6E+02 0.0057 22.2 5.0 67 29-96 88-155 (163)
10 KOG4788 Members of chemokine-l 18.7 5E+02 0.011 20.8 13.2 24 38-61 38-61 (172)
No 1
>TIGR01569 A_tha_TIGR01569 plant integral membrane protein TIGR01569. This model describes a region of ~160 residues found exclusively in plant proteins, generally as the near complete length of the protein. At least 24 different members are found in Arabidopsis thaliana. Members have four predicted transmembrane regions, the last of which is preceded by an invariant CXXXXX[FY]C motif. The family is not functionally characterized.
Probab=100.00 E-value=2.7e-37 Score=247.78 Aligned_cols=139 Identities=30% Similarity=0.398 Sum_probs=130.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCC--------CccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcchh
Q 029463 39 LVFRLAAFCFSLASSIFMLTNSRGSN--------SPRWYDYDAFRFVFAANAIVAIYSLFEMGVSVWEISRGATFFPEVL 110 (193)
Q Consensus 39 l~LR~~a~~~sl~a~~vM~t~~qt~~--------~~~f~~~~af~ylv~an~i~~~Ysllql~~~~~~l~~~~~~~~~~~ 110 (193)
++||+++++++++|+++|+||+|+.+ +++|+|+++|+|+|++|+|+++|+++|++++++.+.+|+.. .
T Consensus 1 l~LR~~~~~~sl~A~vvm~t~~qt~~~~~~~~~~~a~f~d~~af~y~v~anai~~~Ysll~l~~~~~~~~~~~~~----~ 76 (154)
T TIGR01569 1 LILRVLAFSATLAAAIVMGTNRETKVVFVQLITFKAKFSDLPAFVYFVVANAIACGYSLLSLVVSIFGLLKRRVF----F 76 (154)
T ss_pred CcHHHHHHHHHHHHHHHhhcccceeeeecccceeeeeeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccch----h
Confidence 46999999999999999999999874 58999999999999999999999999999999887777643 3
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCC-------CCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029463 111 QVWFDFGHDQVFAYLLLSADSAGTELARTLKGTD-------TCTAANAFCLQSDISVALGFAGFLFIGVSSLLSGFRV 181 (193)
Q Consensus 111 ~~~~~f~~Dqv~ayLL~SaasAA~~v~~l~~~g~-------~C~~~~~FC~~~~~Sv~lsflA~~~~~~ss~lSa~~L 181 (193)
..|++|++||+++|+++||++||+++++++++|| .|+++++||+|+++|++++|+|++++++++++|++++
T Consensus 77 ~~~~~f~~D~v~~~Ll~sa~sAA~av~~l~~~G~~~~~W~~iC~~~~~FC~~~~~sl~~s~~a~v~~~llsv~Sa~~~ 154 (154)
T TIGR01569 77 KLIALFFLDLVMLALLSSGTSAAAAVAYVGKLGNKEAGWLKICGVFGKFCDRIAGSLALSLFAVILLVLLSILSAISL 154 (154)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4999999999999999999999999999999996 4999999999999999999999999999999999874
No 2
>PF04535 DUF588: Domain of unknown function (DUF588); InterPro: IPR006702 This family of plant proteins contains a domain that may have a catalytic activity. It has a conserved arginine and aspartate that could form an active site. These proteins are predicted to contain 3 or 4 transmembrane helices.
Probab=100.00 E-value=1.8e-34 Score=229.25 Aligned_cols=136 Identities=40% Similarity=0.644 Sum_probs=126.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCC------CccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Q 029463 32 RRFNSLILVFRLAAFCFSLASSIFMLTNSRGSN------SPRWYDYDAFRFVFAANAIVAIYSLFEMGVSVWEISRGATF 105 (193)
Q Consensus 32 r~~~~~~l~LR~~a~~~sl~a~~vM~t~~qt~~------~~~f~~~~af~ylv~an~i~~~Ysllql~~~~~~l~~~~~~ 105 (193)
|+.+.++++||+++++++++|+++|++|+|+.+ +++|+|+++|+|++++|+|+++|+++|++.+++.+.+|+
T Consensus 1 ~~~~~~~l~LR~~~~~~sl~a~~vm~t~~qt~~~~~~~~~~~f~~~~af~ylv~a~~i~~~Ysl~~~~~~~~~~~~~~-- 78 (149)
T PF04535_consen 1 RSLRIASLVLRLLAFVLSLAALAVMATNKQTVSVFSIQFTAKFSDYPAFRYLVAANVIACVYSLLQLVLSIYSLSRGK-- 78 (149)
T ss_pred CCchhhhHHHHHHHHHHHHHHHHHHHhcCCcceeeccccceeecccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC--
Confidence 345677899999999999999999999999753 899999999999999999999999999999999888877
Q ss_pred CcchhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCC-------CCcchhhhhhhHHHHHHHHHHHHHH
Q 029463 106 FPEVLQVWFDFGHDQVFAYLLLSADSAGTELARTLKGTD-------TCTAANAFCLQSDISVALGFAGFLF 169 (193)
Q Consensus 106 ~~~~~~~~~~f~~Dqv~ayLL~SaasAA~~v~~l~~~g~-------~C~~~~~FC~~~~~Sv~lsflA~~~ 169 (193)
.+++...|++|++||+++|+++||++||+++++++++|| .|+.+++||+|+++|++++|+|+++
T Consensus 79 ~~~~~~~~~~f~~Dqv~~~ll~sa~~Aa~~~~~~~~~g~~~~~W~~vC~~~~~FC~~~~~sv~lsf~a~~~ 149 (149)
T PF04535_consen 79 LRSKLLAWFLFILDQVLAYLLFSAASAAAAVAYLGKKGNSHVQWSKVCSQFGKFCNRAAASVALSFLAFVA 149 (149)
T ss_pred CcccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhhccchhhHHHHHHHHHHHHHHHHHC
Confidence 556777999999999999999999999999999999885 5999999999999999999999974
No 3
>PF01284 MARVEL: Membrane-associating domain; InterPro: IPR021128 This entry represents the ~130-residue MARVEL (MAL and related proteins for vesicle trafficking and membrane link) domain. The MARVEL domain is a module with a four transmembrane-helix architecture that has been identified in proteins of the myelin and lymphocyte (MAL), physins, gyrins and occludin families. All described MARVEL domain-containing proteins are consistent with the M-shaped topology: four transmembrane-helix region architecture with cytoplasmic N- and C-terminal regions. Their function could be related to cholesterol-rich membrane apposition events in a variety of cellular processes, such as biogenesis of vesicular transport carriers or tight junction regulation [].
Probab=98.56 E-value=3.1e-06 Score=64.93 Aligned_cols=134 Identities=18% Similarity=0.176 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhHHHHHH
Q 029463 38 ILVFRLAAFCFSLASSIFMLTNSRGSNSPRWYDYDAFRFVFAANAIVAIYSLFEMGVSVWEISRGATFFPEVLQVWFDFG 117 (193)
Q Consensus 38 ~l~LR~~a~~~sl~a~~vM~t~~qt~~~~~f~~~~af~ylv~an~i~~~Ysllql~~~~~~l~~~~~~~~~~~~~~~~f~ 117 (193)
..++|+++++++++.+.+++....+.........++..|.+.+.++...|++.-++...+. . +. .++....+.+++
T Consensus 6 ~~ilR~lq~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~-~-~~--~~~~~~~~~~~~ 81 (144)
T PF01284_consen 6 SGILRILQLVFALIIFGLVASSIATGSQIYGGSPSACGFALFVAVLSFLYTLIFLLLYLFS-L-KY--RPRIPWPLVEFI 81 (144)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHH-H-hc--ccccccchhHHH
Confidence 4789999999999999999998744333355667788999999999999998888877654 1 11 223455778999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCC---C-CCcchhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 029463 118 HDQVFAYLLLSADSAGTELARTLKGT---D-TCTAANAFCLQSDISVALGFAGFLFIGVSSL 175 (193)
Q Consensus 118 ~Dqv~ayLL~SaasAA~~v~~l~~~g---~-~C~~~~~FC~~~~~Sv~lsflA~~~~~~ss~ 175 (193)
.|.+++.+-+.+..+-+.-....+.+ + .+...++-|+...++.+++|+.++++..+.+
T Consensus 82 ~~~v~~il~l~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Aa~~f~~~~~~l~~~s~~ 143 (144)
T PF01284_consen 82 FDAVFAILWLAAFIALAAYLSDHSCSNTGNDYSYSGCSRCGAWKAAAAFGFLNWLLFIVSAV 143 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcccccCCCCcCCCCCCcchhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998777665433221111 1 2334567899999999999999999988765
No 4
>KOG4016 consensus Synaptic vesicle protein Synaptogyrin involved in regulation of Ca2+-dependent exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=58.19 E-value=1.2e+02 Score=26.01 Aligned_cols=137 Identities=14% Similarity=0.115 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCC------Cccc-cccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcchhh
Q 029463 39 LVFRLAAFCFSLASSIFMLTNSRGSN------SPRW-YDYDAFRFVFAANAIVAIYSLFEMGVSVWEISRGATFFPEVLQ 111 (193)
Q Consensus 39 l~LR~~a~~~sl~a~~vM~t~~qt~~------~~~f-~~~~af~ylv~an~i~~~Ysllql~~~~~~l~~~~~~~~~~~~ 111 (193)
.++|+...+|+++-.--+.+.-=... ---| +|..+.+|=+++.+.++.=+++-++++.+- -+=+....+|..
T Consensus 26 ti~R~~~~lFsliVf~si~~eGy~n~~~~~~~~Ciynrn~~ACsyg~avG~~Afla~~~flvlD~~f-~qISsv~~Rkra 104 (233)
T KOG4016|consen 26 TILRVVSWLFSLIVFGSIVNEGYLNSASSGEEFCIYNRNSNACSYGVAVGVLAFLACLAFLVLDVYF-PQISSVKDRKRA 104 (233)
T ss_pred hHHHHHHHHHHHhheeeeccccccCcccCCceEEEECCCCcchhHHHHHHHHHHHHHHHHHHHHhhh-hhhcccchhHHH
Confidence 78999999999876665555321111 0012 567799999999999999888888888652 111111223333
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHH-hCC--C-CCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 029463 112 VWFDFGHDQVFAYLLLSADSAGTELARTL-KGT--D-TCTAANAFCLQSDISVALGFAGFLFIGVSSLLSGFRVACFIIN 187 (193)
Q Consensus 112 ~~~~f~~Dqv~ayLL~SaasAA~~v~~l~-~~g--~-~C~~~~~FC~~~~~Sv~lsflA~~~~~~ss~lSa~~L~r~~~~ 187 (193)
...+++.-.+-+.+-+=+- .+++ +|. + .-+..+ -+.+.++|+.+|+.++.-...+++. ++|+.+
T Consensus 105 Vl~Dl~~SalwtflwfvGF------c~l~nqwqvs~p~~~~~~--a~saraaIafsffSilsW~~~A~lA----~qR~~~ 172 (233)
T KOG4016|consen 105 VLADLGVSALWAFLWFVGF------CFLANQWQVSKPKENPLG--AGSARAAIAFSFFSILSWGGQAVLA----FQRYRI 172 (233)
T ss_pred HHHHHHHHHHHHHHHHHHH------HHHHHHhhccCCCCCCcC--cchHHHHHHHHHHHHHHHHHHHHHH----HHHHHh
Confidence 3333333333333333222 2222 221 1 011111 2368899999999888877777665 444444
Q ss_pred c
Q 029463 188 G 188 (193)
Q Consensus 188 ~ 188 (193)
|
T Consensus 173 g 173 (233)
T KOG4016|consen 173 G 173 (233)
T ss_pred c
Confidence 4
No 5
>PF09788 Tmemb_55A: Transmembrane protein 55A; InterPro: IPR019178 Members of this family catalyse the hydrolysis of the 4-position phosphate of phosphatidylinositol 4,5-bisphosphate, in the reaction: 1-phosphatidyl-myo-inositol 4,5-bisphosphate + H(2)O = 1-phosphatidyl-1D-myo-inositol 5-phosphate + phosphate.
Probab=36.23 E-value=80 Score=27.65 Aligned_cols=74 Identities=15% Similarity=0.175 Sum_probs=37.7
Q ss_pred CCCCCCCcccchh-hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccchHHHHHHHHHHHHHHHHHHH
Q 029463 14 SPLPRIPHFQSTL-SVQKLRRFNSLILVFRLAAFCFSLASSIFMLTNSRGSNSPRWYDYDAFRFVFAANAIVAIYSLFEM 92 (193)
Q Consensus 14 ~~~~~~~~~~~~~-~~~~~r~~~~~~l~LR~~a~~~sl~a~~vM~t~~qt~~~~~f~~~~af~ylv~an~i~~~Ysllql 92 (193)
+...+=|||.-.. ...+..|-.. +++=++.+++.++++.+|+..- ++.......|++++.. .+..++.+
T Consensus 175 ~tlARCPHCrKvSSVG~~faRkR~--i~f~llgllfliiaigltvGT~------~~A~~~~giY~~wv~~--~l~a~~~~ 244 (256)
T PF09788_consen 175 NTLARCPHCRKVSSVGPRFARKRA--IIFFLLGLLFLIIAIGLTVGTW------TYAKTYGGIYVSWVGL--FLIALICL 244 (256)
T ss_pred CccccCCCCceeccccchHhhhHH--HHHHHHHHHHHHHHHHHhhhhH------HHHhhcCcEeHHHHHH--HHHHHHHH
Confidence 4556788887221 2222222221 5556677778888888876532 2222222355555444 33444555
Q ss_pred HHHHH
Q 029463 93 GVSVW 97 (193)
Q Consensus 93 ~~~~~ 97 (193)
..++|
T Consensus 245 ~rs~y 249 (256)
T PF09788_consen 245 IRSIY 249 (256)
T ss_pred HHhhe
Confidence 55544
No 6
>PF06376 DUF1070: Protein of unknown function (DUF1070); InterPro: IPR009424 This entry represents the arabinogalactan peptide family found in plants [].
Probab=24.51 E-value=94 Score=18.90 Aligned_cols=16 Identities=31% Similarity=0.395 Sum_probs=12.6
Q ss_pred HhHHHHHHHHHHHHHH
Q 029463 117 GHDQVFAYLLLSADSA 132 (193)
Q Consensus 117 ~~Dqv~ayLL~SaasA 132 (193)
..||.++|+|+-++-.
T Consensus 13 aiDqgiay~Lm~~Al~ 28 (34)
T PF06376_consen 13 AIDQGIAYMLMLVALV 28 (34)
T ss_pred hhhHHHHHHHHHHHHH
Confidence 4699999999876543
No 7
>PHA02673 ORF109 EEV glycoprotein; Provisional
Probab=19.99 E-value=3.3e+02 Score=22.26 Aligned_cols=29 Identities=24% Similarity=0.503 Sum_probs=16.0
Q ss_pred Ccccchh-hhhhhhhhhhHHHHHHHHHHHHHH
Q 029463 20 PHFQSTL-SVQKLRRFNSLILVFRLAAFCFSL 50 (193)
Q Consensus 20 ~~~~~~~-~~~~~r~~~~~~l~LR~~a~~~sl 50 (193)
|.+--++ +.+-.||. ..+.+|+.+++.-+
T Consensus 16 ~~y~as~~r~k~~~R~--i~l~~Ri~~~iSIi 45 (161)
T PHA02673 16 ANYVASVKRQKAIRRY--IKLFFRLMAAIAII 45 (161)
T ss_pred cchhhHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 5444343 33333443 45999998775443
No 8
>PHA03093 EEV glycoprotein; Provisional
Probab=19.79 E-value=1.7e+02 Score=24.47 Aligned_cols=28 Identities=7% Similarity=0.115 Sum_probs=15.6
Q ss_pred cccchhhhhhh--hhhhhHHHHHHHHHHHH
Q 029463 21 HFQSTLSVQKL--RRFNSLILVFRLAAFCF 48 (193)
Q Consensus 21 ~~~~~~~~~~~--r~~~~~~l~LR~~a~~~ 48 (193)
++||....+|- ++.+...+.+|+.++..
T Consensus 17 TiYG~klkkk~~~kk~r~i~i~~RisiiiS 46 (185)
T PHA03093 17 TIYGDKLKKKKNKKKVKCIGICIRISIIIS 46 (185)
T ss_pred eeechhhcccchHHHHHHHHHHHHHHHHHH
Confidence 34544433332 33445569999987653
No 9
>PF06653 Claudin_3: Tight junction protein, Claudin-like; InterPro: IPR009545 This family consists of several Caenorhabditis elegans specific proteins of unknown function.
Probab=19.71 E-value=2.6e+02 Score=22.16 Aligned_cols=67 Identities=19% Similarity=0.311 Sum_probs=41.1
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccc-hHHHHHHHHHHHHHHHHHHHHHHH
Q 029463 29 QKLRRFNSLILVFRLAAFCFSLASSIFMLTNSRGSNSPRWYDYD-AFRFVFAANAIVAIYSLFEMGVSV 96 (193)
Q Consensus 29 ~~~r~~~~~~l~LR~~a~~~sl~a~~vM~t~~qt~~~~~f~~~~-af~ylv~an~i~~~Ysllql~~~~ 96 (193)
.+.|++-...-.+=++.+++.++|.++++.|-+... .+|.+.. .+=|-....+++++-++.....+.
T Consensus 88 ~~~r~~~~~i~~~s~li~il~~iavil~a~~~~~~~-~~~~~~~~~lGyS~wL~v~sail~~~~~~ls~ 155 (163)
T PF06653_consen 88 CSIRKWFHIISIFSLLIVILTIIAVILFAVNISSFN-NGYDPFSLSLGYSAWLCVASAILSLINFGLSG 155 (163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHheeEEeeccccc-cccccccceeehHHHHHHHHHHHHHHHHHHHH
Confidence 455666655566778889999999999999875432 1333332 344444455555555555555553
No 10
>KOG4788 consensus Members of chemokine-like factor super family and related proteins [Defense mechanisms]
Probab=18.72 E-value=5e+02 Score=20.83 Aligned_cols=24 Identities=8% Similarity=0.178 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCC
Q 029463 38 ILVFRLAAFCFSLASSIFMLTNSR 61 (193)
Q Consensus 38 ~l~LR~~a~~~sl~a~~vM~t~~q 61 (193)
.=+|+++.++++++..+.......
T Consensus 38 ~G~Lki~e~~l~li~fi~i~~~~~ 61 (172)
T KOG4788|consen 38 LGLLKILEIVLGLIIFICIASSLA 61 (172)
T ss_pred HhHHHHHHHHHHHHHheeeecCcc
Confidence 358999999999999998888764
Done!