Query 029463
Match_columns 193
No_of_seqs 113 out of 486
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 21:58:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029463.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029463hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ihs_I Hirutonin; hydrolase(se 35.8 12 0.00041 20.3 0.8 11 3-13 3-13 (26)
2 5gds_I Hirunorm V; serine prot 33.6 13 0.00044 20.2 0.7 11 3-13 8-18 (26)
3 2l3y_A Interleukin-6; cytokine 16.4 1.7E+02 0.0059 23.2 4.5 34 3-36 6-39 (190)
4 3tbo_A Zinc finger, CDGSH-type 11.6 77 0.0026 20.7 0.9 14 15-28 29-42 (60)
5 1v54_J Cytochrome C oxidase po 9.0 4E+02 0.014 16.9 3.7 27 69-95 27-53 (59)
6 1jb0_X Photosystem I subunit P 7.2 2.4E+02 0.0082 16.3 1.7 13 76-88 18-30 (35)
7 2lg4_A Aurelin; antimicrobial 9.5 99 0.0034 18.5 0.0 17 140-156 6-22 (40)
8 3tbm_A Putative uncharacterize 6.3 1.7E+02 0.0057 19.5 0.9 13 15-27 48-60 (69)
9 2y69_J Cytochrome C oxidase po 5.9 6.4E+02 0.022 17.1 3.7 27 69-95 48-74 (80)
10 3qoe_A Heterocyst differentiat 5.4 1.6E+02 0.0055 24.5 0.4 14 117-130 18-31 (302)
No 1
>1ihs_I Hirutonin; hydrolase(serine proteinase), hydrolase-hydrolase inhibitor; HET: DPN OPR; 2.00A {Homo sapiens}
Probab=35.81 E-value=12 Score=20.30 Aligned_cols=11 Identities=36% Similarity=0.501 Sum_probs=9.5
Q ss_pred CCcCCCCCCCC
Q 029463 3 SPQSLHNGDTP 13 (193)
Q Consensus 3 ~~~~~~~~~~~ 13 (193)
.||+|++||-.
T Consensus 3 pPqshn~gDFe 13 (26)
T 1ihs_I 3 PXQSHNDGDFE 13 (26)
T ss_pred CcccCCCCCCC
Confidence 59999999876
No 2
>5gds_I Hirunorm V; serine protease-inhibitor complex, thrombin, thrombin synthe inhibitors, antithrombotics, hirunorms; HET: CHG NAL ALC DGL NAG; 2.10A {Homo sapiens} PDB: 4thn_I*
Probab=33.57 E-value=13 Score=20.23 Aligned_cols=11 Identities=36% Similarity=0.567 Sum_probs=9.4
Q ss_pred CCcCCCCCCCC
Q 029463 3 SPQSLHNGDTP 13 (193)
Q Consensus 3 ~~~~~~~~~~~ 13 (193)
-||+|++||-.
T Consensus 8 kPqshn~gDfe 18 (26)
T 5gds_I 8 XPESHXGGDYE 18 (26)
T ss_pred CcccccCCCcc
Confidence 59999999865
No 3
>2l3y_A Interleukin-6; cytokine, signaling, GP-130, transcription; NMR {Mus musculus}
Probab=16.37 E-value=1.7e+02 Score=23.23 Aligned_cols=34 Identities=12% Similarity=0.066 Sum_probs=24.7
Q ss_pred CCcCCCCCCCCCCCCCCCcccchhhhhhhhhhhh
Q 029463 3 SPQSLHNGDTPSPLPRIPHFQSTLSVQKLRRFNS 36 (193)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 36 (193)
.|++.|...+..-+||+|++-..-..+..|++..
T Consensus 6 t~~~~~~d~~~~~~~~r~~~t~~~~~~~ik~Il~ 39 (190)
T 2l3y_A 6 TSQVRRGDFTEDTTPNRPVYTTSQVGGLITHVLW 39 (190)
T ss_dssp -CCCCCCCCCCCCCCSSCCCSHHHHHHHHHHHHH
T ss_pred CCCCcCCcccCcCCCCCCCCCCccHHHHHHHHHH
Confidence 5788888888889999998876655566666543
No 4
>3tbo_A Zinc finger, CDGSH-type domain protein; iron-sulfur, metal binding protein; 1.50A {Pyrobaculum calidifontis}
Probab=11.56 E-value=77 Score=20.72 Aligned_cols=14 Identities=21% Similarity=0.169 Sum_probs=10.7
Q ss_pred CCCCCCcccchhhh
Q 029463 15 PLPRIPHFQSTLSV 28 (193)
Q Consensus 15 ~~~~~~~~~~~~~~ 28 (193)
-+.|+|+|+|+=..
T Consensus 29 ~S~n~PFCDGSHk~ 42 (60)
T 3tbo_A 29 HSGSKPHCDGTHAK 42 (60)
T ss_dssp CCTTTTBCCSHHHH
T ss_pred CCCCCCccCCcCCC
Confidence 46899999997543
No 5
>1v54_J Cytochrome C oxidase polypeptide VIIA-heart; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.4.1 PDB: 1oco_J* 1occ_J* 1ocz_J* 1ocr_J* 1v55_J* 2dyr_J* 2dys_J* 2eij_J* 2eik_J* 2eil_J* 2eim_J* 2ein_J* 2occ_J* 2ybb_U* 2zxw_J* 3abk_J* 3abl_J* 3abm_J* 3ag1_J* 3ag2_J* ...
Probab=8.99 E-value=4e+02 Score=16.95 Aligned_cols=27 Identities=22% Similarity=0.297 Sum_probs=20.5
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHH
Q 029463 69 YDYDAFRFVFAANAIVAIYSLFEMGVS 95 (193)
Q Consensus 69 ~~~~af~ylv~an~i~~~Ysllql~~~ 95 (193)
+|.--|++..+..+++.+|++-++...
T Consensus 27 sd~~Ly~~t~~l~~~g~~~~~y~l~~~ 53 (59)
T 1v54_J 27 TDNILYRVTMTLCLGGTLYSLYCLGWA 53 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CceeHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667888888888888888777654
No 6
>1jb0_X Photosystem I subunit PSAX; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.20.1 PDB: 3pcq_X*
Probab=7.15 E-value=2.4e+02 Score=16.27 Aligned_cols=13 Identities=38% Similarity=0.580 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHH
Q 029463 76 FVFAANAIVAIYS 88 (193)
Q Consensus 76 ylv~an~i~~~Ys 88 (193)
.++++|-++++|=
T Consensus 18 llLaINflVAayY 30 (35)
T 1jb0_X 18 LLLAINFLVAAYY 30 (35)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6778888888773
No 7
>2lg4_A Aurelin; antimicrobial protein; NMR {Aurelia aurita}
Probab=9.55 E-value=99 Score=18.55 Aligned_cols=17 Identities=24% Similarity=0.516 Sum_probs=13.2
Q ss_pred HhCCCCCcchhhhhhhH
Q 029463 140 LKGTDTCTAANAFCLQS 156 (193)
Q Consensus 140 ~~~g~~C~~~~~FC~~~ 156 (193)
-..|..|.+|..||+..
T Consensus 6 r~~~h~C~~f~e~C~d~ 22 (40)
T 2lg4_A 6 RAHGHICESFKSFCKDS 22 (40)
Confidence 34566799999999876
No 8
>3tbm_A Putative uncharacterized protein; iron-sulfur, CDGSH, metal binding protein; HET: 2PE TLA; 1.80A {Ralstonia solanacearum}
Probab=6.28 E-value=1.7e+02 Score=19.52 Aligned_cols=13 Identities=8% Similarity=0.013 Sum_probs=10.2
Q ss_pred CCCCCCcccchhh
Q 029463 15 PLPRIPHFQSTLS 27 (193)
Q Consensus 15 ~~~~~~~~~~~~~ 27 (193)
.+.|+|+|+|+=.
T Consensus 48 ~S~n~PfCDGsH~ 60 (69)
T 3tbm_A 48 HSLNKPFCDGSHK 60 (69)
T ss_dssp CCSSTTBCCSHHH
T ss_pred CCCCCCccCCCcC
Confidence 4789999998753
No 9
>2y69_J Cytochrome C oxidase polypeptide 7A1; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=5.86 E-value=6.4e+02 Score=17.05 Aligned_cols=27 Identities=22% Similarity=0.297 Sum_probs=20.8
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHH
Q 029463 69 YDYDAFRFVFAANAIVAIYSLFEMGVS 95 (193)
Q Consensus 69 ~~~~af~ylv~an~i~~~Ysllql~~~ 95 (193)
+|.--|.+.++..+++.+|++-++...
T Consensus 48 sd~~Ly~~t~~l~~~G~~~~ly~l~~~ 74 (80)
T 2y69_J 48 TDNILYRVTMTLCLGGTLYSLYCLGWA 74 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cceeHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677888888888888888777654
No 10
>3qoe_A Heterocyst differentiation protein; MCSG, PSI biology, structural genomics, midwest center for S genomics, helix-turn-helix; 3.00A {Fischerella thermalis} PDB: 3qod_A
Probab=5.35 E-value=1.6e+02 Score=24.52 Aligned_cols=14 Identities=43% Similarity=0.579 Sum_probs=12.2
Q ss_pred HhHHHHHHHHHHHH
Q 029463 117 GHDQVFAYLLLSAD 130 (193)
Q Consensus 117 ~~Dqv~ayLL~Saa 130 (193)
.+||++.||.+||-
T Consensus 18 AmDqimlyLAFsAm 31 (302)
T 3qoe_A 18 AMDQIMLYLAFSAM 31 (302)
T ss_dssp HHHHHHHTTSHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 68999999999873
Done!