Query 029465
Match_columns 193
No_of_seqs 166 out of 1121
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 22:02:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029465.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029465hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ftc_E L12MT, MRP-L12, 39S rib 100.0 1.4E-46 4.8E-51 301.3 14.7 133 61-193 1-137 (137)
2 2j01_L 50S ribosomal protein L 100.0 7.8E-42 2.7E-46 270.2 13.8 121 62-192 4-124 (125)
3 2zjq_5 50S ribosomal protein L 100.0 2.3E-41 7.9E-46 266.6 13.6 118 62-192 4-121 (122)
4 1dd3_A 50S ribosomal protein L 100.0 1.3E-42 4.6E-47 275.4 3.7 123 62-192 2-127 (128)
5 3sgf_J 50S ribosomal protein L 100.0 2.9E-42 1E-46 271.3 -0.7 117 62-192 4-120 (121)
6 1ctf_A Ribosomal protein L7/L1 100.0 1.7E-31 6E-36 194.5 7.4 71 121-192 3-73 (74)
7 1dd4_C 50S ribosomal protein L 99.1 9.9E-11 3.4E-15 76.1 5.1 35 62-96 2-36 (40)
8 1zav_U 50S ribosomal protein L 98.6 3.9E-08 1.3E-12 60.2 3.7 28 63-90 3-30 (30)
9 2cp9_A EF-TS, EF-TSMT, elongat 84.9 0.67 2.3E-05 32.4 3.0 26 139-164 10-35 (64)
10 2jml_A DNA binding domain/tran 48.0 15 0.00051 25.0 3.1 28 137-164 51-78 (81)
11 2p63_A Cell division control p 40.8 45 0.0015 22.6 4.4 32 58-89 22-53 (56)
12 1mul_A NS2, HU-2, DNA binding 36.9 17 0.00058 25.4 2.0 33 138-170 3-35 (90)
13 1b8z_A Protein (histonelike pr 36.4 18 0.0006 25.3 2.0 33 138-170 3-35 (90)
14 3rhi_A DNA-binding protein HU; 35.8 15 0.00052 26.0 1.6 34 137-170 5-38 (93)
15 1p71_A DNA-binding protein HU; 34.8 20 0.00067 25.3 2.0 34 137-170 2-35 (94)
16 3c4i_A DNA-binding protein HU 34.4 20 0.00068 25.7 2.0 34 137-170 2-35 (99)
17 2o97_B NS1, HU-1, DNA-binding 34.3 18 0.00062 25.3 1.8 32 138-169 3-34 (90)
18 1q08_A Zn(II)-responsive regul 31.2 55 0.0019 22.6 3.9 25 137-162 4-28 (99)
19 1owf_A IHF-alpha, integration 30.7 25 0.00084 25.1 2.0 34 137-170 4-37 (99)
20 1owf_B IHF-beta, integration H 27.6 31 0.0011 24.2 2.1 32 138-169 3-35 (94)
21 2zkr_l 60S ribosomal protein L 26.4 39 0.0013 26.2 2.6 15 178-192 132-146 (148)
22 1exe_A Transcription factor 1; 26.3 19 0.00064 25.9 0.7 34 138-171 3-36 (99)
23 1r8e_A Multidrug-efflux transp 26.2 54 0.0018 26.4 3.5 27 136-163 50-76 (278)
24 3j21_L 50S ribosomal protein L 26.2 39 0.0013 26.5 2.6 25 164-192 121-146 (147)
25 1f80_D Acyl carrier protein; t 25.0 65 0.0022 20.9 3.2 23 71-93 37-59 (81)
26 1in0_A YAJQ protein, HI1034; a 24.3 41 0.0014 27.3 2.4 60 127-191 47-122 (163)
27 1l0i_A Acyl carrier protein; a 24.1 64 0.0022 20.8 3.0 22 72-93 34-55 (78)
28 1ctf_A Ribosomal protein L7/L1 24.0 76 0.0026 22.5 3.5 22 62-83 21-42 (74)
29 3a1y_A 50S ribosomal protein P 24.0 36 0.0012 22.7 1.7 16 176-191 19-34 (58)
30 2rnn_A E3 SUMO-protein ligase 23.7 43 0.0015 25.6 2.3 25 60-84 27-51 (114)
31 2lol_A ACP, acyl carrier prote 22.9 69 0.0024 20.8 3.0 23 71-93 36-58 (81)
32 3gpv_A Transcriptional regulat 22.8 90 0.0031 23.7 4.1 25 137-162 61-85 (148)
33 2l4b_A Acyl carrier protein; i 22.5 75 0.0026 21.2 3.2 22 72-93 42-63 (88)
34 3gzm_A Acyl carrier protein; h 22.5 71 0.0024 21.0 3.0 22 72-93 36-57 (81)
35 2amw_A Hypothetical protein NE 22.1 74 0.0025 21.0 3.1 20 74-93 38-57 (83)
36 1v5i_B POIA1, IA-1=serine prot 21.9 45 0.0015 22.6 2.0 25 166-190 8-32 (76)
37 3gp4_A Transcriptional regulat 21.8 1E+02 0.0035 23.3 4.2 25 137-162 47-71 (142)
38 1u7i_A Hypothetical protein; s 21.7 63 0.0021 23.1 2.8 21 172-193 88-108 (136)
39 1x3o_A Acyl carrier protein; s 21.3 79 0.0027 20.2 3.1 22 72-93 36-57 (80)
40 2qnw_A Acyl carrier protein; m 21.3 77 0.0026 20.8 3.0 23 71-93 37-59 (82)
41 2np2_A HBB; protein-DNA comple 20.6 37 0.0013 24.6 1.3 33 137-169 10-47 (108)
42 2kwl_A ACP, acyl carrier prote 20.6 79 0.0027 20.8 3.0 23 71-93 39-61 (84)
43 2ehs_A ACP, acyl carrier prote 20.0 88 0.003 19.8 3.0 22 72-93 32-53 (77)
No 1
>2ftc_E L12MT, MRP-L12, 39S ribosomal protein L12, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=100.00 E-value=1.4e-46 Score=301.31 Aligned_cols=133 Identities=31% Similarity=0.466 Sum_probs=111.5
Q ss_pred hhHHHHHHHHhcCCHHHHHHHHHHHHHHcCCCCCCccccccccCCCCCCCCCCC---chhhhhcccceeEEEEeecccch
Q 029465 61 DKVVQLAERIASLTPEERRQISLTLFKRFSLPKLQPISTEGLDLGPQGGAPAGS---AKVEEKKEKTTFDVKLEKFEAAA 137 (193)
Q Consensus 61 ~kV~~ivd~I~~LtllE~seLv~~leekfgv~~~~~~~~~~~~~~~~~~aa~~~---a~~e~~~EKT~FdV~L~~~~a~k 137 (193)
+||++|+|+|++|||+|++||++.|+++|||++.++++++++++++++++++++ +.+++++|||+|||+|++||+++
T Consensus 1 ~kv~~ive~i~~LtllE~~eLv~~leekfgv~aaa~~~~~~~~~~~~~~a~a~~~~~~~a~~~eEKteFdV~L~~~~a~~ 80 (137)
T 2ftc_E 1 PKIQQLVQDIASLTLLEISDLNELLKKTLKIQDVGLMPMGGMVPGAAPAPTAPEAAEEDVPKQKERTHFTVRLTEAKPVD 80 (137)
T ss_pred CcHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcccccccccccccCCCCccccccccccccccccCCeeEEEeeccCccc
Confidence 589999999999999999999999999999998765544333222211111111 11222468999999999999899
Q ss_pred hHHHHHHHHHh-hcCChHHHHHHHHhCchhhhcCCCHHHHHHHHHHHHHcCCeEeeC
Q 029465 138 KLKIVKEVKTF-FDLGMKEAKELVEKAPVVLKQGLTKEEASNIIEKIKAAGGVAIME 193 (193)
Q Consensus 138 KI~VIKeVR~i-T~LGLKEAK~lVEs~P~vIKe~vsKeEAEeik~kLeaaGA~V~iE 193 (193)
||+|||+||++ |||||||||+|||++|++||+|+||||||+||++|+++||+|+||
T Consensus 81 KI~VIK~VR~i~TgLgLkEAK~lVe~aP~~iKe~vsKeeAE~iK~kLe~aGA~Vele 137 (137)
T 2ftc_E 81 KVKLIKEIKNYVQGINLVQAKKLVESLPQEIKANVAKAEAEKIKAALEAVGGTVVLE 137 (137)
T ss_pred hhHHHHHHHHhccCCChHHHHHHHHhCCHHHHcCCCHHHHHHHHHHHHHcCCEEEeC
Confidence 99999999997 999999999999999999999999999999999999999999997
No 2
>2j01_L 50S ribosomal protein L7; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} PDB: 2j03_L 3i8i_I
Probab=100.00 E-value=7.8e-42 Score=270.22 Aligned_cols=121 Identities=32% Similarity=0.504 Sum_probs=104.6
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHHcCCCCCCccccccccCCCCCCCCCCCchhhhhcccceeEEEEeecccchhHHH
Q 029465 62 KVVQLAERIASLTPEERRQISLTLFKRFSLPKLQPISTEGLDLGPQGGAPAGSAKVEEKKEKTTFDVKLEKFEAAAKLKI 141 (193)
Q Consensus 62 kV~~ivd~I~~LtllE~seLv~~leekfgv~~~~~~~~~~~~~~~~~~aa~~~a~~e~~~EKT~FdV~L~~~~a~kKI~V 141 (193)
++++|+|+|++||++|++||++.|+++|||++.+|++++ +++++ + ++ +++.+|||+|||+|++|+ ++||+|
T Consensus 4 ~~~~i~e~i~~ltllE~~eLv~~lee~fgv~aaapva~~---~~~~~-a-~~---a~a~eEKteFdV~L~~~~-~~KI~V 74 (125)
T 2j01_L 4 DIERIKEELSQATVLELKQLIDALKEAWGVTAAAPVAVA---AAPAA-G-AA---AAPAEEKTEFDVILKEAG-AKKLEV 74 (125)
T ss_pred cHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCcccccccc---ccCcc-c-cc---cccccccceeEEEEeeCC-cchHHH
Confidence 468999999999999999999999999999987654321 11111 1 11 123468999999999997 799999
Q ss_pred HHHHHHhhcCChHHHHHHHHhCchhhhcCCCHHHHHHHHHHHHHcCCeEee
Q 029465 142 VKEVKTFFDLGMKEAKELVEKAPVVLKQGLTKEEASNIIEKIKAAGGVAIM 192 (193)
Q Consensus 142 IKeVR~iT~LGLKEAK~lVEs~P~vIKe~vsKeEAEeik~kLeaaGA~V~i 192 (193)
||+||++|||||||||+|||++ ++||+|+||+|||+||++|+++||+|+|
T Consensus 75 IK~VR~itgLgLkEAK~lVe~a-~~iKe~vsKeeAE~iK~kLe~aGA~Vel 124 (125)
T 2j01_L 75 IKELRAITGLGLKEAKDLAEKG-GPVKEGVSKQEAEEIKKKLEAVGAVVEL 124 (125)
T ss_pred HHHHHHhcCCCHHHHHHHHHHH-HHHHhcCCHHHHHHHHHHHHHcCCEEEe
Confidence 9999999999999999999999 9999999999999999999999999997
No 3
>2zjq_5 50S ribosomal protein L7/L12; ribosome, ribosomal subunit, thiopeptide antibiotics, complex, translational regulation, molecular switch; 3.30A {Deinococcus radiodurans} SCOP: d.45.1.1
Probab=100.00 E-value=2.3e-41 Score=266.56 Aligned_cols=118 Identities=33% Similarity=0.458 Sum_probs=103.5
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHHcCCCCCCccccccccCCCCCCCCCCCchhhhhcccceeEEEEeecccchhHHH
Q 029465 62 KVVQLAERIASLTPEERRQISLTLFKRFSLPKLQPISTEGLDLGPQGGAPAGSAKVEEKKEKTTFDVKLEKFEAAAKLKI 141 (193)
Q Consensus 62 kV~~ivd~I~~LtllE~seLv~~leekfgv~~~~~~~~~~~~~~~~~~aa~~~a~~e~~~EKT~FdV~L~~~~a~kKI~V 141 (193)
++++|+|+|++||++|++||++.|+++|||++++|++++ +++ + + + ++++|||+|||+|++|+ ++||+|
T Consensus 4 ~~~~i~e~i~~ltllE~~eLv~~lee~fgv~aaap~a~a----~~~--a-~-a---~a~eEKteFdV~L~~~~-~~KI~V 71 (122)
T 2zjq_5 4 DKQALIDQLGQLTIMELADLIDGLKETWGVTAAVAVSGG----GAG--A-A-S---PAAEEKTEFDVVLIDAG-ASKINV 71 (122)
T ss_pred cHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCCccccccc----CCC--c-c-c---ccccccceeEEEEecCC-cchHHH
Confidence 468999999999999999999999999999987653211 111 1 1 1 12358999999999997 799999
Q ss_pred HHHHHHhhcCChHHHHHHHHhCchhhhcCCCHHHHHHHHHHHHHcCCeEee
Q 029465 142 VKEVKTFFDLGMKEAKELVEKAPVVLKQGLTKEEASNIIEKIKAAGGVAIM 192 (193)
Q Consensus 142 IKeVR~iT~LGLKEAK~lVEs~P~vIKe~vsKeEAEeik~kLeaaGA~V~i 192 (193)
||+||++|||||||||+|||++ ++||+|+||+|||+||++|+++||+|+|
T Consensus 72 IK~VR~itgLgLkEAK~lVe~a-~~iKe~vsKeeAE~iK~kLe~aGA~Vel 121 (122)
T 2zjq_5 72 IKEIRGITGLGLKEAKDMSEKG-GVLKEGVAKDEAEKMKAQLEAAGARVEL 121 (122)
T ss_pred HHHHHHhcCCCHHHHHHHHHHH-HHHHhcCCHHHHHHHHHHHHHcCCEEEe
Confidence 9999999999999999999999 9999999999999999999999999997
No 4
>1dd3_A 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge region, four-helix-bundl helix- bundle, alpha-beta structure; 2.00A {Thermotoga maritima} SCOP: a.108.1.1 d.45.1.1 PDB: 1dd4_A* 1giy_I 1yl3_I
Probab=100.00 E-value=1.3e-42 Score=275.43 Aligned_cols=123 Identities=36% Similarity=0.552 Sum_probs=105.0
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHHcCCCCCCccccccccCCCCCCCCCCCchhhhhcccceeEEEEeecccchhHHH
Q 029465 62 KVVQLAERIASLTPEERRQISLTLFKRFSLPKLQPISTEGLDLGPQGGAPAGSAKVEEKKEKTTFDVKLEKFEAAAKLKI 141 (193)
Q Consensus 62 kV~~ivd~I~~LtllE~seLv~~leekfgv~~~~~~~~~~~~~~~~~~aa~~~a~~e~~~EKT~FdV~L~~~~a~kKI~V 141 (193)
.+++|+|+|++||++|++||++.|+++|||++.++++++ ++++++ ++..++++|||+|||+|++|+ ++||+|
T Consensus 2 ~~~~ive~i~~ltllE~~eLv~~lee~fgv~aaapva~~---~~~~~~----~a~~~a~eEKteFdV~L~~~~-~~KI~V 73 (128)
T 1dd3_A 2 TIDEIIEAIEKLTVSELAELVKKLEDKFGVTAAAPVAVA---AAPVAG----AAAGAAQEEKTEFDVVLKSFG-QNKIQV 73 (128)
T ss_dssp CHHHHHHHHTTSCHHHHHHHHHHHHHHHCHHHHHHHHHH---HHHHHH----HHHHHHHHTTSSEEEEEEECT-TCHHHH
T ss_pred CHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCcchhhcc---cccccc----ccccccccccceeeEEEecCC-cchHHH
Confidence 368999999999999999999999999999976543221 111000 111133469999999999997 799999
Q ss_pred HHHHHHhhcCChHHHHHHHHhCch---hhhcCCCHHHHHHHHHHHHHcCCeEee
Q 029465 142 VKEVKTFFDLGMKEAKELVEKAPV---VLKQGLTKEEASNIIEKIKAAGGVAIM 192 (193)
Q Consensus 142 IKeVR~iT~LGLKEAK~lVEs~P~---vIKe~vsKeEAEeik~kLeaaGA~V~i 192 (193)
||+||++|||||||||+|||++|+ +||+|+||+|||+||++|+++||+|+|
T Consensus 74 IK~VR~itgLgLKEAK~lVe~aP~~~~~iKe~vsKeeAE~iK~kLe~aGA~Vel 127 (128)
T 1dd3_A 74 IKVVREITGLGLKEAKDLVEKAGSPDAVIKSGVSKEEAEEIKKKLEEAGAEVEL 127 (128)
T ss_dssp HHHHHHHHCCCHHHHHHHHTTTTSTTCEEEEEECHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHhcCCCHHHHHHHHHhCCccchHHHcCCCHHHHHHHHHHHHHcCCEEEe
Confidence 999999999999999999999999 999999999999999999999999997
No 5
>3sgf_J 50S ribosomal protein L7/L12; typeii release factor binding with ribosome, ribosome-antibi complex; 3.20A {Escherichia coli} PDB: 2xtg_L 2xux_L 3uos_J 1rqu_A 1rqv_A 2gya_3 2gyc_3 1rqt_A
Probab=100.00 E-value=2.9e-42 Score=271.27 Aligned_cols=117 Identities=31% Similarity=0.484 Sum_probs=27.1
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHHcCCCCCCccccccccCCCCCCCCCCCchhhhhcccceeEEEEeecccchhHHH
Q 029465 62 KVVQLAERIASLTPEERRQISLTLFKRFSLPKLQPISTEGLDLGPQGGAPAGSAKVEEKKEKTTFDVKLEKFEAAAKLKI 141 (193)
Q Consensus 62 kV~~ivd~I~~LtllE~seLv~~leekfgv~~~~~~~~~~~~~~~~~~aa~~~a~~e~~~EKT~FdV~L~~~~a~kKI~V 141 (193)
.+++|+|+|++||++|++||++.|+++|||+++++++ ++ ++ + +++.+|||+|||+|++|+ ++||+|
T Consensus 4 ~~~~ive~i~~ltllE~~eLv~~lee~fgVsaaa~~a------~~-a~--~----a~a~eEKteFdV~L~~~g-~~Ki~V 69 (121)
T 3sgf_J 4 TKDQIIEAVAAMSVMDVVELISAMEEKFGVSAAAAVA------VA-AG--P----VEAAEEKTEFDVILKAAG-ANKVAV 69 (121)
T ss_dssp CHHHHHHGGGGCHHHHHHHHHTTTCSCC----------------------------------------------------
T ss_pred cHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCcccccc------cc-cc--c----cccccccceeEEEEecCc-hhhHHH
Confidence 5789999999999999999999999999999875431 11 11 1 122358999999999996 799999
Q ss_pred HHHHHHhhcCChHHHHHHHHhCchhhhcCCCHHHHHHHHHHHHHcCCeEee
Q 029465 142 VKEVKTFFDLGMKEAKELVEKAPVVLKQGLTKEEASNIIEKIKAAGGVAIM 192 (193)
Q Consensus 142 IKeVR~iT~LGLKEAK~lVEs~P~vIKe~vsKeEAEeik~kLeaaGA~V~i 192 (193)
||+||++|||||||||+|||++|++||+|+||+|||+||++|+++||+|+|
T Consensus 70 IK~VR~itgLgLkEAK~lVe~aP~~iKe~vsKeeAE~ik~kLe~aGA~Vel 120 (121)
T 3sgf_J 70 IKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKALEEAGAEVEV 120 (121)
T ss_dssp ---------------------------------------------------
T ss_pred HHHHHHhcCCCHHHHHHHHHhCCHHHHcCCCHHHHHHHHHHHHHcCCEEee
Confidence 999999999999999999999999999999999999999999999999987
No 6
>1ctf_A Ribosomal protein L7/L12; 1.70A {Escherichia coli} SCOP: d.45.1.1 PDB: 1rqs_A 2bcw_B
Probab=99.97 E-value=1.7e-31 Score=194.47 Aligned_cols=71 Identities=41% Similarity=0.627 Sum_probs=66.0
Q ss_pred cccceeEEEEeecccchhHHHHHHHHHhhcCChHHHHHHHHhCchhhhcCCCHHHHHHHHHHHHHcCCeEee
Q 029465 121 KEKTTFDVKLEKFEAAAKLKIVKEVKTFFDLGMKEAKELVEKAPVVLKQGLTKEEASNIIEKIKAAGGVAIM 192 (193)
Q Consensus 121 ~EKT~FdV~L~~~~a~kKI~VIKeVR~iT~LGLKEAK~lVEs~P~vIKe~vsKeEAEeik~kLeaaGA~V~i 192 (193)
+|||+|||+|++|+ ++||+|||+||++|||||||||+|||++|++||+|+||+|||+||++|+++||+|+|
T Consensus 3 eEkteFdV~L~~~~-~~Ki~vIK~VR~itgLgLkEAK~lVe~~P~~iKe~vsKeeAe~ik~~Le~aGA~Vel 73 (74)
T 1ctf_A 3 EEKTEFDVILKAAG-ANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKALEEAGAEVEV 73 (74)
T ss_dssp ----CEEEEEEECG-GGHHHHHHHHHHHHCCCHHHHHHHHHTCSEEEEEEECHHHHHHHHHHHHHHTCEEEE
T ss_pred cccceeEEEEeeCC-cchhHHHHHHHHHcCCCHHHHHHHHHhCcHHHHcCCCHHHHHHHHHHHHHcCCEEEe
Confidence 48999999999997 799999999999999999999999999999999999999999999999999999997
No 7
>1dd4_C 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge region, four-helix- bundle, five-helix- bundle, alpha-beta structure; HET: TBR; 2.40A {Thermotoga maritima} SCOP: a.108.1.1
Probab=99.10 E-value=9.9e-11 Score=76.07 Aligned_cols=35 Identities=23% Similarity=0.351 Sum_probs=31.7
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHHcCCCCCCc
Q 029465 62 KVVQLAERIASLTPEERRQISLTLFKRFSLPKLQP 96 (193)
Q Consensus 62 kV~~ivd~I~~LtllE~seLv~~leekfgv~~~~~ 96 (193)
++++|+|+|++||++|++||++.||++|||+++++
T Consensus 2 ~~~~iie~i~~lTvlE~~eLvk~leekfGVsaaa~ 36 (40)
T 1dd4_C 2 TIDEIIEAIEKLTVSELAELVKKLEDKFGVTAAAP 36 (40)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHTCCCSCC-
T ss_pred CHHHHHHHHHhCcHHHHHHHHHHHHHHHCCCcccc
Confidence 47899999999999999999999999999987643
No 8
>1zav_U 50S ribosomal protein L7/L12; ribosome structure and function, L10-L12 complex structure, L10E structure, L7/12 ribosomal stalk; 1.90A {Thermotoga maritima} SCOP: a.108.1.1 PDB: 1zaw_U 1zax_U 1dd3_C
Probab=98.58 E-value=3.9e-08 Score=60.25 Aligned_cols=28 Identities=25% Similarity=0.345 Sum_probs=27.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHcC
Q 029465 63 VVQLAERIASLTPEERRQISLTLFKRFS 90 (193)
Q Consensus 63 V~~ivd~I~~LtllE~seLv~~leekfg 90 (193)
+++|+|+|++||++|++||++.||++||
T Consensus 3 ~~~iie~i~~lTvlEl~eLvk~lEe~fG 30 (30)
T 1zav_U 3 IDEIIEAIEKLTVSELAELVKKLEDKFG 30 (30)
T ss_dssp HHHHHHHHHHSBHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHHhC
Confidence 6899999999999999999999999998
No 9
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=84.90 E-value=0.67 Score=32.36 Aligned_cols=26 Identities=8% Similarity=0.152 Sum_probs=22.1
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHhCc
Q 029465 139 LKIVKEVKTFFDLGMKEAKELVEKAP 164 (193)
Q Consensus 139 I~VIKeVR~iT~LGLKEAK~lVEs~P 164 (193)
...||++|+.||.|++|+|+..+.+-
T Consensus 10 ~~~Vk~LRe~TGag~~dcKkAL~e~~ 35 (64)
T 2cp9_A 10 KELLMKLRRKTGYSFVNCKKALETCG 35 (64)
T ss_dssp CHHHHHHHHHHCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 36799999999999999999766544
No 10
>2jml_A DNA binding domain/transcriptional regulator; anti-repressor, MERR, carotenogenesis; HET: DNA; NMR {Myxococcus xanthus}
Probab=48.01 E-value=15 Score=25.00 Aligned_cols=28 Identities=21% Similarity=0.214 Sum_probs=23.0
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHhCc
Q 029465 137 AKLKIVKEVKTFFDLGMKEAKELVEKAP 164 (193)
Q Consensus 137 kKI~VIKeVR~iT~LGLKEAK~lVEs~P 164 (193)
..+..|+..|.-.|+.|+|.|+++...|
T Consensus 51 ~~l~~I~~l~~~~G~sl~ei~~~l~~~~ 78 (81)
T 2jml_A 51 EAVRRVARLIQEEGLSVSEAIAQVKTEP 78 (81)
T ss_dssp HHHHHHHHHHHHTSTHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHccC
Confidence 5677777777667999999999998765
No 11
>2p63_A Cell division control protein 4; ubiquitination, helix bundle, SCF complex, cell cycle; 2.67A {Saccharomyces cerevisiae}
Probab=40.82 E-value=45 Score=22.64 Aligned_cols=32 Identities=13% Similarity=0.100 Sum_probs=25.6
Q ss_pred CCChhHHHHHHHHhcCCHHHHHHHHHHHHHHc
Q 029465 58 PPSDKVVQLAERIASLTPEERRQISLTLFKRF 89 (193)
Q Consensus 58 ~~s~kV~~ivd~I~~LtllE~seLv~~leekf 89 (193)
|++---.-|..-+++|+--|++||+..|++.+
T Consensus 22 p~~~~knLiF~Lvs~m~RseLSDl~TlikDNL 53 (56)
T 2p63_A 22 PHAYFKNLLFRLVANMDRSELSDLGTLIKDNL 53 (56)
T ss_dssp CTTHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhccHHHHHHHHHHHHhhh
Confidence 34545556677789999999999999999865
No 12
>1mul_A NS2, HU-2, DNA binding protein HU-alpha; histone-like; HET: DNA; 2.30A {Escherichia coli} SCOP: a.55.1.1 PDB: 2o97_A
Probab=36.92 E-value=17 Score=25.40 Aligned_cols=33 Identities=15% Similarity=0.262 Sum_probs=28.1
Q ss_pred hHHHHHHHHHhhcCChHHHHHHHHhCchhhhcC
Q 029465 138 KLKIVKEVKTFFDLGMKEAKELVEKAPVVLKQG 170 (193)
Q Consensus 138 KI~VIKeVR~iT~LGLKEAK~lVEs~P~vIKe~ 170 (193)
|-.+|+.|.+-++|.-++++..|+.+-.+|.+.
T Consensus 3 k~eli~~ia~~~~ls~~~~~~~l~~~~~~i~~~ 35 (90)
T 1mul_A 3 KTQLIDVIAEKAELSKTQAKAALESTLAAITES 35 (90)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 568899999999999999999999987776653
No 13
>1b8z_A Protein (histonelike protein HU); thermostable DNA binding protein; 1.60A {Thermotoga maritima} SCOP: a.55.1.1 PDB: 1riy_A
Probab=36.39 E-value=18 Score=25.26 Aligned_cols=33 Identities=12% Similarity=0.173 Sum_probs=28.1
Q ss_pred hHHHHHHHHHhhcCChHHHHHHHHhCchhhhcC
Q 029465 138 KLKIVKEVKTFFDLGMKEAKELVEKAPVVLKQG 170 (193)
Q Consensus 138 KI~VIKeVR~iT~LGLKEAK~lVEs~P~vIKe~ 170 (193)
|-.+|+.|.+-++|.-++++..|+.+-..|.+.
T Consensus 3 k~eli~~ia~~~~ls~~~~~~~l~~~~~~i~~~ 35 (90)
T 1b8z_A 3 KKELIDRVAKKAGAKKKDVKLILDTILETITEA 35 (90)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHH
Confidence 568899999999999999999999887766643
No 14
>3rhi_A DNA-binding protein HU; structural genomics, center for structural genom infectious diseases, csgid; 2.48A {Bacillus anthracis} SCOP: a.55.1.1 PDB: 1hue_A 1huu_A
Probab=35.82 E-value=15 Score=26.01 Aligned_cols=34 Identities=21% Similarity=0.272 Sum_probs=27.7
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHhCchhhhcC
Q 029465 137 AKLKIVKEVKTFFDLGMKEAKELVEKAPVVLKQG 170 (193)
Q Consensus 137 kKI~VIKeVR~iT~LGLKEAK~lVEs~P~vIKe~ 170 (193)
+|-.+|+.|.+-++|.-++++..|+.+-.+|.+.
T Consensus 5 tk~eLi~~ia~~~~lsk~~~~~~v~~~~~~i~~~ 38 (93)
T 3rhi_A 5 NKTELIKNVAQNAEISQKEATVVVQTVVESITNT 38 (93)
T ss_dssp --CHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHH
Confidence 4668999999999999999999999887776643
No 15
>1p71_A DNA-binding protein HU; protein-DNA complex, DNA bending, DNA binding protein-DN; 1.90A {Anabaena SP} SCOP: a.55.1.1 PDB: 1p51_A 1p78_A
Probab=34.84 E-value=20 Score=25.34 Aligned_cols=34 Identities=18% Similarity=0.154 Sum_probs=28.3
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHhCchhhhcC
Q 029465 137 AKLKIVKEVKTFFDLGMKEAKELVEKAPVVLKQG 170 (193)
Q Consensus 137 kKI~VIKeVR~iT~LGLKEAK~lVEs~P~vIKe~ 170 (193)
+|-.+|+.|.+-++|.-++++..|+.+-.+|.+.
T Consensus 2 ~k~eli~~ia~~~~ls~~~~~~~l~~~~~~i~~~ 35 (94)
T 1p71_A 2 NKGELVDAVAEKASVTKKQADAVLTAALETIIEA 35 (94)
T ss_dssp BHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 3668899999999999999999999887666543
No 16
>3c4i_A DNA-binding protein HU homolog; dimerization by four helix bundle interaction, DNA condensat binding; 2.04A {Mycobacterium tuberculosis}
Probab=34.40 E-value=20 Score=25.66 Aligned_cols=34 Identities=12% Similarity=0.163 Sum_probs=28.7
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHhCchhhhcC
Q 029465 137 AKLKIVKEVKTFFDLGMKEAKELVEKAPVVLKQG 170 (193)
Q Consensus 137 kKI~VIKeVR~iT~LGLKEAK~lVEs~P~vIKe~ 170 (193)
+|-.+|+.|.+-++|.-++++.+|+.+-.+|.+.
T Consensus 2 tk~eLi~~ia~~~~lsk~~~~~~l~~~~~~i~~~ 35 (99)
T 3c4i_A 2 NKAELIDVLTQKLGSDRRQATAAVENVVDTIVRA 35 (99)
T ss_dssp BHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 3668899999999999999999999987776653
No 17
>2o97_B NS1, HU-1, DNA-binding protein HU-beta; heterodimer, DNA structure, DNA supercoiling, E DNA binding protein; 2.45A {Escherichia coli} SCOP: a.55.1.1
Probab=34.27 E-value=18 Score=25.32 Aligned_cols=32 Identities=9% Similarity=0.169 Sum_probs=26.6
Q ss_pred hHHHHHHHHHhhcCChHHHHHHHHhCchhhhc
Q 029465 138 KLKIVKEVKTFFDLGMKEAKELVEKAPVVLKQ 169 (193)
Q Consensus 138 KI~VIKeVR~iT~LGLKEAK~lVEs~P~vIKe 169 (193)
|-.+|+.|.+-++|.-++++..|+.+-.+|.+
T Consensus 3 k~eli~~ia~~~~ls~~~~~~~l~~~~~~i~~ 34 (90)
T 2o97_B 3 KSQLIDKIAAGADISKAAAGRALDAIIASVTE 34 (90)
T ss_dssp HHHHHHHHHHTTC-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 56889999999999999999999988766654
No 18
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=31.21 E-value=55 Score=22.57 Aligned_cols=25 Identities=16% Similarity=0.505 Sum_probs=20.3
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHh
Q 029465 137 AKLKIVKEVKTFFDLGMKEAKELVEK 162 (193)
Q Consensus 137 kKI~VIKeVR~iT~LGLKEAK~lVEs 162 (193)
..+..|+..|+ +|++|.|-|++++.
T Consensus 4 ~rL~~I~~lr~-lGfsL~eIk~~l~~ 28 (99)
T 1q08_A 4 QRLKFIRHARQ-LGFSLESIRELLSI 28 (99)
T ss_dssp HHHHHHHHHHH-TTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 35677888775 59999999999974
No 19
>1owf_A IHF-alpha, integration HOST factor alpha-subunit; protein-DNA recognition, indirect readout, DNA bending, minor groove; 1.95A {Escherichia coli} SCOP: a.55.1.1 PDB: 1ihf_A 1ouz_A 1owg_A 2ht0_A
Probab=30.74 E-value=25 Score=25.11 Aligned_cols=34 Identities=24% Similarity=0.249 Sum_probs=28.8
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHhCchhhhcC
Q 029465 137 AKLKIVKEVKTFFDLGMKEAKELVEKAPVVLKQG 170 (193)
Q Consensus 137 kKI~VIKeVR~iT~LGLKEAK~lVEs~P~vIKe~ 170 (193)
+|-.+|+.|.+.++|.-++++..|+.+-.+|.+.
T Consensus 4 ~k~eli~~ia~~~~ls~~~~~~vl~~~~~~i~~~ 37 (99)
T 1owf_A 4 TKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRA 37 (99)
T ss_dssp CHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 4668999999999999999999999987776653
No 20
>1owf_B IHF-beta, integration HOST factor beta-subunit; protein-DNA recognition, indirect readout, DNA bending, minor groove; 1.95A {Escherichia coli} SCOP: a.55.1.1 PDB: 1ouz_B 2ht0_B 1ihf_B 1owg_B
Probab=27.57 E-value=31 Score=24.21 Aligned_cols=32 Identities=13% Similarity=0.175 Sum_probs=27.1
Q ss_pred hHHHHHHHHHh-hcCChHHHHHHHHhCchhhhc
Q 029465 138 KLKIVKEVKTF-FDLGMKEAKELVEKAPVVLKQ 169 (193)
Q Consensus 138 KI~VIKeVR~i-T~LGLKEAK~lVEs~P~vIKe 169 (193)
|-.+|+.|.+- ++|.-++++..|+.+-.+|.+
T Consensus 3 k~eli~~ia~~~~~ls~~~~~~~l~~~~~~i~~ 35 (94)
T 1owf_B 3 KSELIERLATQQSHIPAKTVEDAVKEMLEHMAS 35 (94)
T ss_dssp HHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence 56889999988 799999999999988766654
No 21
>2zkr_l 60S ribosomal protein L27A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=26.36 E-value=39 Score=26.23 Aligned_cols=15 Identities=40% Similarity=0.705 Sum_probs=11.3
Q ss_pred HHHHHHHHcCCeEee
Q 029465 178 NIIEKIKAAGGVAIM 192 (193)
Q Consensus 178 eik~kLeaaGA~V~i 192 (193)
..++++|+||++|++
T Consensus 132 ~A~ekIeaAGG~v~~ 146 (148)
T 2zkr_l 132 RAEEKIKSVGGACVL 146 (148)
T ss_dssp HHHHHHHHTTCEEEE
T ss_pred HHHHHHHHcCCEEEe
Confidence 346678889998875
No 22
>1exe_A Transcription factor 1; beta ribbon ARMS, DNA-binding, DNA-bending protein; NMR {Bacillus phage SPO1} SCOP: a.55.1.1 PDB: 1wtu_A
Probab=26.31 E-value=19 Score=25.86 Aligned_cols=34 Identities=9% Similarity=0.185 Sum_probs=29.0
Q ss_pred hHHHHHHHHHhhcCChHHHHHHHHhCchhhhcCC
Q 029465 138 KLKIVKEVKTFFDLGMKEAKELVEKAPVVLKQGL 171 (193)
Q Consensus 138 KI~VIKeVR~iT~LGLKEAK~lVEs~P~vIKe~v 171 (193)
|-.+|+.|.+-++|.-++++..|+.+-.+|.+.+
T Consensus 3 k~eLi~~ia~~~~lsk~~~~~~l~~~~~~i~~~L 36 (99)
T 1exe_A 3 KTELIKAIAQDTGLTQVSVSKMLASFEKIITETV 36 (99)
T ss_dssp TTHHHHHHHHHHCSCCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 5578999999999999999999999887776543
No 23
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=26.22 E-value=54 Score=26.42 Aligned_cols=27 Identities=19% Similarity=0.284 Sum_probs=22.2
Q ss_pred chhHHHHHHHHHhhcCChHHHHHHHHhC
Q 029465 136 AAKLKIVKEVKTFFDLGMKEAKELVEKA 163 (193)
Q Consensus 136 ~kKI~VIKeVR~iT~LGLKEAK~lVEs~ 163 (193)
-..+..|+..|+. |++|+|.|++++..
T Consensus 50 ~~~l~~i~~l~~~-g~~l~~i~~~~~~~ 76 (278)
T 1r8e_A 50 LIHLDLIKSLKYI-GTPLEEMKKAQDLE 76 (278)
T ss_dssp GGHHHHHHHHHHT-TCCHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHC-CCCHHHHHHHHHhC
Confidence 4678888888764 99999999999765
No 24
>3j21_L 50S ribosomal protein L15P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=26.19 E-value=39 Score=26.48 Aligned_cols=25 Identities=48% Similarity=0.749 Sum_probs=16.7
Q ss_pred chhhhcC-CCHHHHHHHHHHHHHcCCeEee
Q 029465 164 PVVLKQG-LTKEEASNIIEKIKAAGGVAIM 192 (193)
Q Consensus 164 P~vIKe~-vsKeEAEeik~kLeaaGA~V~i 192 (193)
|-+|+.. +|+ ..++++|+||++|++
T Consensus 121 ~v~Vka~~fS~----~A~ekIeaaGG~v~~ 146 (147)
T 3j21_L 121 PLVIKARAFSP----KAEEKIKAAGGEAVL 146 (147)
T ss_dssp CEEEEESEECH----HHHHHHHHTTCEEEE
T ss_pred CEEEEEEecCH----HHHHHHHHcCCEEEe
Confidence 5566543 454 345688999999986
No 25
>1f80_D Acyl carrier protein; transferase; HET: PN2; 2.30A {Bacillus subtilis} SCOP: a.28.1.1 PDB: 2x2b_A* 1hy8_A
Probab=24.99 E-value=65 Score=20.92 Aligned_cols=23 Identities=9% Similarity=0.146 Sum_probs=19.7
Q ss_pred hcCCHHHHHHHHHHHHHHcCCCC
Q 029465 71 ASLTPEERRQISLTLFKRFSLPK 93 (193)
Q Consensus 71 ~~LtllE~seLv~~leekfgv~~ 93 (193)
..+.=+.+.+|+..|+++||+.-
T Consensus 37 lG~DSl~~vel~~~le~~fgi~i 59 (81)
T 1f80_D 37 LGADXLDVVELVMELEDEFDMEI 59 (81)
T ss_dssp SCCCHHHHHHHHHHHHHHTTCCC
T ss_pred cCCcHHHHHHHHHHHHHHhCCcc
Confidence 45777889999999999999964
No 26
>1in0_A YAJQ protein, HI1034; alpha and beta sandwich, structural genomics, structure 2 function project, S2F, unknown function; 2.14A {Haemophilus influenzae} SCOP: d.58.49.1 d.58.49.1
Probab=24.25 E-value=41 Score=27.30 Aligned_cols=60 Identities=18% Similarity=0.237 Sum_probs=41.3
Q ss_pred EEEEeecccchhHHHHHHH-HH-hh--cCChHHHHHHHH--h----------CchhhhcCCCHHHHHHHHHHHHHcCCeE
Q 029465 127 DVKLEKFEAAAKLKIVKEV-KT-FF--DLGMKEAKELVE--K----------APVVLKQGLTKEEASNIIEKIKAAGGVA 190 (193)
Q Consensus 127 dV~L~~~~a~kKI~VIKeV-R~-iT--~LGLKEAK~lVE--s----------~P~vIKe~vsKeEAEeik~kLeaaGA~V 190 (193)
.++|.+- .+-|+.-++.| ++ +. |+.|+ - ++ . .-..||+|+++|.|.+|.+.+++.+-+|
T Consensus 47 ~i~l~a~-~d~kl~qv~DiL~~kl~KRgid~k---~-ld~~~~~~~sG~~vrq~~~lk~GI~~e~AKkIvK~IKdsklKV 121 (163)
T 1in0_A 47 TIKITTE-SDFQLEQLIEILIGSCIKRGIEHS---S-LDIPAESEHHGKLYSKEIKLKQGIETEMAKKITKLVKDSKIKV 121 (163)
T ss_dssp EEEEEES-CHHHHHHHHHHHHHHHHHTTCCGG---G-EECCSSCEEETTEEEEEEEECCSCCHHHHHHHHHHHHHHTCSE
T ss_pred EEEEEeC-CHHHHHHHHHHHHHHHHHcCCCch---h-cccCCCccccCCEEEEEEEeecccCHHHHHHHHHHHHhcCCcc
Confidence 5777764 46788776644 52 22 55554 1 12 1 1236899999999999999999998776
Q ss_pred e
Q 029465 191 I 191 (193)
Q Consensus 191 ~ 191 (193)
.
T Consensus 122 q 122 (163)
T 1in0_A 122 Q 122 (163)
T ss_dssp E
T ss_pred e
Confidence 3
No 27
>1l0i_A Acyl carrier protein; acyl chain binding, fatty acid biosynt lipid transport; HET: PSR; 1.20A {Escherichia coli} SCOP: a.28.1.1 PDB: 3ny7_B* 2fhs_C 1l0h_A* 1acp_A 1t8k_A 2fac_A* 2fad_A* 2fae_A* 2k92_A 2k93_A 2k94_A 2l0q_A
Probab=24.09 E-value=64 Score=20.80 Aligned_cols=22 Identities=9% Similarity=0.146 Sum_probs=18.0
Q ss_pred cCCHHHHHHHHHHHHHHcCCCC
Q 029465 72 SLTPEERRQISLTLFKRFSLPK 93 (193)
Q Consensus 72 ~LtllE~seLv~~leekfgv~~ 93 (193)
.+.=+.+.+|+..|+++||+.-
T Consensus 34 G~DSl~~~el~~~le~~fgi~i 55 (78)
T 1l0i_A 34 GADSLDTVELVMALEEEFDTEI 55 (78)
T ss_dssp CCCHHHHHHHHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHHHhCCCC
Confidence 4556778899999999999964
No 28
>1ctf_A Ribosomal protein L7/L12; 1.70A {Escherichia coli} SCOP: d.45.1.1 PDB: 1rqs_A 2bcw_B
Probab=24.03 E-value=76 Score=22.54 Aligned_cols=22 Identities=14% Similarity=0.206 Sum_probs=19.5
Q ss_pred hHHHHHHHHhcCCHHHHHHHHH
Q 029465 62 KVVQLAERIASLTPEERRQISL 83 (193)
Q Consensus 62 kV~~ivd~I~~LtllE~seLv~ 83 (193)
+|...|..|-+|.|.|+.+||+
T Consensus 21 ~vIK~VR~itgLgLkEAK~lVe 42 (74)
T 1ctf_A 21 AVIKAVRGATGLGLKEAKDLVE 42 (74)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHH
Confidence 4667888999999999999997
No 29
>3a1y_A 50S ribosomal protein P1 (L12P); stalk, helix SPIN, ribonucleoprotein; 2.13A {Pyrococcus horikoshii}
Probab=23.99 E-value=36 Score=22.69 Aligned_cols=16 Identities=25% Similarity=0.233 Sum_probs=14.0
Q ss_pred HHHHHHHHHHcCCeEe
Q 029465 176 ASNIIEKIKAAGGVAI 191 (193)
Q Consensus 176 AEeik~kLeaaGA~V~ 191 (193)
+++|++-|+++|..|+
T Consensus 19 ~~~I~~il~aaGveve 34 (58)
T 3a1y_A 19 EENLKAVLQAAGVEPE 34 (58)
T ss_dssp HHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHcCCCcc
Confidence 6889999999998875
No 30
>2rnn_A E3 SUMO-protein ligase SIZ1; SUMO ligase, DNA binding, sumoylation, metal-binding, nucLeu phosphoprotein, UBL conjugation pathway; NMR {Saccharomyces cerevisiae}
Probab=23.70 E-value=43 Score=25.65 Aligned_cols=25 Identities=16% Similarity=0.179 Sum_probs=21.8
Q ss_pred ChhHHHHHHHHhcCCHHHHHHHHHH
Q 029465 60 SDKVVQLAERIASLTPEERRQISLT 84 (193)
Q Consensus 60 s~kV~~ivd~I~~LtllE~seLv~~ 84 (193)
++.+..++..++.|++.|+.++++.
T Consensus 27 ~~e~~~~~~~l~kLtVaELK~~cr~ 51 (114)
T 2rnn_A 27 RNEVEETITLMELLKVSELKDICRS 51 (114)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHhhHHHHHHHHHH
Confidence 4789999999999999998887764
No 31
>2lol_A ACP, acyl carrier protein; lipid transport; NMR {Rickettsia prowazekii str}
Probab=22.91 E-value=69 Score=20.77 Aligned_cols=23 Identities=0% Similarity=0.081 Sum_probs=19.8
Q ss_pred hcCCHHHHHHHHHHHHHHcCCCC
Q 029465 71 ASLTPEERRQISLTLFKRFSLPK 93 (193)
Q Consensus 71 ~~LtllE~seLv~~leekfgv~~ 93 (193)
..+.=+.+.+|+..|+++||+.-
T Consensus 36 lG~DSl~~~el~~~le~~fgi~i 58 (81)
T 2lol_A 36 LKADSLDTVELMMAIEVEYGIDI 58 (81)
T ss_dssp TTCCHHHHHHHHHHHHHHHCCCC
T ss_pred cCCcHHHHHHHHHHHHHHHCCCC
Confidence 46777889999999999999964
No 32
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=22.80 E-value=90 Score=23.68 Aligned_cols=25 Identities=12% Similarity=0.287 Sum_probs=19.9
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHh
Q 029465 137 AKLKIVKEVKTFFDLGMKEAKELVEK 162 (193)
Q Consensus 137 kKI~VIKeVR~iT~LGLKEAK~lVEs 162 (193)
..+..|+..|+ .|++|+|.|++++.
T Consensus 61 ~~l~~I~~lr~-~G~sL~eIk~~l~~ 85 (148)
T 3gpv_A 61 KYLEMILCLKN-TGMPIQKIKQFIDW 85 (148)
T ss_dssp HHHHHHHHHHT-TTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHH-cCCCHHHHHHHHHh
Confidence 56667777665 69999999999983
No 33
>2l4b_A Acyl carrier protein; infectious disease, human granulocytic anaplasmosis, ssgcid, structural genomics; NMR {Anaplasma phagocytophilum}
Probab=22.53 E-value=75 Score=21.21 Aligned_cols=22 Identities=27% Similarity=0.347 Sum_probs=18.1
Q ss_pred cCCHHHHHHHHHHHHHHcCCCC
Q 029465 72 SLTPEERRQISLTLFKRFSLPK 93 (193)
Q Consensus 72 ~LtllE~seLv~~leekfgv~~ 93 (193)
.+.=+.+.+|+..||++|||.-
T Consensus 42 glDSl~~vel~~~lE~~fgi~i 63 (88)
T 2l4b_A 42 NLDSLDFVDLIMSLEERFSLEI 63 (88)
T ss_dssp TCCHHHHHHHHHHHHHHTTCCC
T ss_pred CCcHHHHHHHHHHHHHHHCCCc
Confidence 4556778899999999999953
No 34
>3gzm_A Acyl carrier protein; helix bundle, phosphopantetheine, fatty acid biosynthesis, L synthesis, transit peptide, biosynthetic protein; HET: PNS; 1.80A {Plasmodium falciparum} SCOP: a.28.1.0 PDB: 3gzl_A* 2fq0_A* 2fq2_A*
Probab=22.45 E-value=71 Score=21.00 Aligned_cols=22 Identities=9% Similarity=0.200 Sum_probs=19.2
Q ss_pred cCCHHHHHHHHHHHHHHcCCCC
Q 029465 72 SLTPEERRQISLTLFKRFSLPK 93 (193)
Q Consensus 72 ~LtllE~seLv~~leekfgv~~ 93 (193)
++.=+.+.+|+..|+++||+.-
T Consensus 36 g~DSl~~vel~~~le~~fgi~i 57 (81)
T 3gzm_A 36 GADSLDLVELIMALEEKFNVTI 57 (81)
T ss_dssp CCCHHHHHHHHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHHHHCCCc
Confidence 6777889999999999999964
No 35
>2amw_A Hypothetical protein NE2163; all helical protein, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}
Probab=22.12 E-value=74 Score=21.05 Aligned_cols=20 Identities=10% Similarity=0.059 Sum_probs=16.9
Q ss_pred CHHHHHHHHHHHHHHcCCCC
Q 029465 74 TPEERRQISLTLFKRFSLPK 93 (193)
Q Consensus 74 tllE~seLv~~leekfgv~~ 93 (193)
.=+.+.+|+-.||++|||.-
T Consensus 38 DSl~~~elv~~lE~~fgi~i 57 (83)
T 2amw_A 38 DSMAVVNVITALEEYFDFSV 57 (83)
T ss_dssp THHHHHHHHHHHHHHTTCCC
T ss_pred CHHHHHHHHHHHHHHhCCee
Confidence 55778899999999999964
No 36
>1v5i_B POIA1, IA-1=serine proteinase inhibitor; protease-inhibitor complex, subtilisin, hydrolase-Pro binding complex; 1.50A {Pleurotus ostreatus} SCOP: d.58.3.2 PDB: 1itp_A
Probab=21.87 E-value=45 Score=22.56 Aligned_cols=25 Identities=16% Similarity=0.460 Sum_probs=18.1
Q ss_pred hhhcCCCHHHHHHHHHHHHHcCCeE
Q 029465 166 VLKQGLTKEEASNIIEKIKAAGGVA 190 (193)
Q Consensus 166 vIKe~vsKeEAEeik~kLeaaGA~V 190 (193)
++|++++.++.+..+..+...|+++
T Consensus 8 ~lk~~~~~~~~~~~~~~~~~~gg~i 32 (76)
T 1v5i_B 8 IFKNDVSEDKIRETKDEVIAEGGTI 32 (76)
T ss_dssp EECTTCCHHHHHHHHHHHHHHTCCC
T ss_pred EECCCCCHHHHHHHHHHHHhhCCce
Confidence 4677777777777777777777754
No 37
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=21.76 E-value=1e+02 Score=23.26 Aligned_cols=25 Identities=4% Similarity=0.150 Sum_probs=20.3
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHh
Q 029465 137 AKLKIVKEVKTFFDLGMKEAKELVEK 162 (193)
Q Consensus 137 kKI~VIKeVR~iT~LGLKEAK~lVEs 162 (193)
..+..|+..|+ +|++|+|.|++++.
T Consensus 47 ~~l~~I~~lr~-~G~sL~eIk~~l~~ 71 (142)
T 3gp4_A 47 RWILFTRQMRR-AGLSIEALIDYLAL 71 (142)
T ss_dssp HHHHHHHHHHH-TTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHH-cCCCHHHHHHHHHH
Confidence 57777777764 69999999999974
No 38
>1u7i_A Hypothetical protein; structural genomics, PA1358, PSI, PROT structure initiative; HET: MSE; 1.40A {Pseudomonas aeruginosa} SCOP: d.32.1.7
Probab=21.67 E-value=63 Score=23.08 Aligned_cols=21 Identities=24% Similarity=0.509 Sum_probs=18.5
Q ss_pred CHHHHHHHHHHHHHcCCeEeeC
Q 029465 172 TKEEASNIIEKIKAAGGVAIME 193 (193)
Q Consensus 172 sKeEAEeik~kLeaaGA~V~iE 193 (193)
+.+|.+++-++|. +|++|.++
T Consensus 88 d~~evd~~~~~l~-~Gg~v~~p 108 (136)
T 1u7i_A 88 SNAQIERLAEALS-DGGKALMP 108 (136)
T ss_dssp CHHHHHHHHHHHH-TTSEEEEE
T ss_pred CHHHHHHHHHHHH-cCCEEecc
Confidence 6888999999999 99998753
No 39
>1x3o_A Acyl carrier protein; structural genomics, riken structural genomics/proteomics in RSGI, NPPSFA; 1.50A {Thermus thermophilus}
Probab=21.34 E-value=79 Score=20.23 Aligned_cols=22 Identities=14% Similarity=0.176 Sum_probs=17.9
Q ss_pred cCCHHHHHHHHHHHHHHcCCCC
Q 029465 72 SLTPEERRQISLTLFKRFSLPK 93 (193)
Q Consensus 72 ~LtllE~seLv~~leekfgv~~ 93 (193)
.+.=+.+.+|+..|+++||+.-
T Consensus 36 G~DSl~~~~l~~~le~~fgi~i 57 (80)
T 1x3o_A 36 GADSLDTVELIMGLEDEFGLEI 57 (80)
T ss_dssp CCCHHHHHHHHHHHHHHHCCCC
T ss_pred CccHHHHHHHHHHHHHHHCCCc
Confidence 4566778899999999999853
No 40
>2qnw_A Acyl carrier protein; malaria, SGC, structural genomics CONS fatty acid biosynthesis, lipid synthesis, phosphopantethein transit peptide; 1.90A {Toxoplasma gondii}
Probab=21.26 E-value=77 Score=20.78 Aligned_cols=23 Identities=4% Similarity=0.185 Sum_probs=19.5
Q ss_pred hcCCHHHHHHHHHHHHHHcCCCC
Q 029465 71 ASLTPEERRQISLTLFKRFSLPK 93 (193)
Q Consensus 71 ~~LtllE~seLv~~leekfgv~~ 93 (193)
..+.=+.+.+|+..||++||+.-
T Consensus 37 lG~DSl~~vel~~~le~~fgi~i 59 (82)
T 2qnw_A 37 LDADSLDSVELVMAFEEKFGVSI 59 (82)
T ss_dssp SCCCHHHHHHHHHHHHHHHTCCC
T ss_pred cCCcHHHHHHHHHHHHHHHCCcC
Confidence 45777889999999999999963
No 41
>2np2_A HBB; protein-DNA complex, DNA-binding protein, DNA-bending protein, dnabii family, HU/IHF family, DNA binding protein/DNA complex; 3.02A {Borrelia burgdorferi}
Probab=20.62 E-value=37 Score=24.64 Aligned_cols=33 Identities=21% Similarity=0.209 Sum_probs=27.9
Q ss_pred hhHHHHHHHH-----HhhcCChHHHHHHHHhCchhhhc
Q 029465 137 AKLKIVKEVK-----TFFDLGMKEAKELVEKAPVVLKQ 169 (193)
Q Consensus 137 kKI~VIKeVR-----~iT~LGLKEAK~lVEs~P~vIKe 169 (193)
+|-.+|+.|. +.++|.-++++..|+.+-.+|.+
T Consensus 10 tk~eLi~~ia~~~~~~~~~lsk~~~~~vl~~~~~~i~~ 47 (108)
T 2np2_A 10 TKSDIVDQIALNIKNNNLKLEKKYIRLVIDAFFEELKS 47 (108)
T ss_dssp EHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhhhhhhhcCCCHHHHHHHHHHHHHHHHH
Confidence 4678999998 78999999999999988766654
No 42
>2kwl_A ACP, acyl carrier protein; structural genomics, seattle structura genomics center for infectious disease, ssgcid, lipid bindi protein; NMR {Borrelia burgdorferi}
Probab=20.56 E-value=79 Score=20.76 Aligned_cols=23 Identities=9% Similarity=-0.038 Sum_probs=19.4
Q ss_pred hcCCHHHHHHHHHHHHHHcCCCC
Q 029465 71 ASLTPEERRQISLTLFKRFSLPK 93 (193)
Q Consensus 71 ~~LtllE~seLv~~leekfgv~~ 93 (193)
..+.=+.+.+|+..||++||+.-
T Consensus 39 lG~DSl~~vel~~~le~~fgi~i 61 (84)
T 2kwl_A 39 LNADSLDIYELLYLLEEAFDDKI 61 (84)
T ss_dssp SSSCHHHHHHHHHHHHHHHTCCT
T ss_pred cCCCHHHHHHHHHHHHHHHCCCc
Confidence 45677889999999999999964
No 43
>2ehs_A ACP, acyl carrier protein; lipid transport, structural genomics, NPPSFA, national proje protein structural and functional analyses; 1.30A {Aquifex aeolicus} PDB: 2eht_A
Probab=20.00 E-value=88 Score=19.77 Aligned_cols=22 Identities=5% Similarity=0.137 Sum_probs=18.3
Q ss_pred cCCHHHHHHHHHHHHHHcCCCC
Q 029465 72 SLTPEERRQISLTLFKRFSLPK 93 (193)
Q Consensus 72 ~LtllE~seLv~~leekfgv~~ 93 (193)
.+.=+.+.+|+..|+++||++-
T Consensus 32 G~DSl~~~~l~~~le~~~gi~i 53 (77)
T 2ehs_A 32 GADSLDVVELIMAFEEEFGIEI 53 (77)
T ss_dssp CCCHHHHHHHHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHHHhCCcc
Confidence 4566788899999999999953
Done!