Query 029466
Match_columns 193
No_of_seqs 45 out of 47
Neff 3.1
Searched_HMMs 46136
Date Fri Mar 29 13:22:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029466.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029466hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF15339 Afaf: Acrosome format 82.9 1.2 2.6E-05 38.8 3.0 25 21-45 140-164 (200)
2 PF10828 DUF2570: Protein of u 80.9 1.9 4.1E-05 33.2 3.2 22 20-41 5-26 (110)
3 PF03908 Sec20: Sec20; InterP 80.0 1.9 4.2E-05 31.9 2.9 19 20-38 72-90 (92)
4 PF10883 DUF2681: Protein of u 76.0 3.5 7.6E-05 31.7 3.3 22 24-45 10-31 (87)
5 PF11190 DUF2976: Protein of u 70.8 3.3 7.2E-05 31.8 2.1 18 21-38 66-83 (87)
6 PF00558 Vpu: Vpu protein; In 68.1 5.1 0.00011 30.6 2.6 15 22-36 11-25 (81)
7 PF11044 TMEMspv1-c74-12: Plec 66.3 7.8 0.00017 27.2 3.0 27 21-47 7-37 (49)
8 COG4068 Uncharacterized protei 62.7 3.5 7.6E-05 30.4 0.8 24 13-37 39-62 (64)
9 COG5393 Predicted membrane pro 62.3 8.3 0.00018 31.9 3.0 21 23-43 91-111 (131)
10 PF06423 GWT1: GWT1; InterPro 62.0 12 0.00026 29.8 3.8 31 14-45 37-67 (136)
11 TIGR03779 Bac_Flav_CT_M Bacter 57.5 6.6 0.00014 37.4 1.9 16 23-38 12-27 (410)
12 PRK01253 preprotein translocas 57.4 4.5 9.7E-05 28.5 0.6 22 17-38 29-50 (54)
13 PF06923 GutM: Glucitol operon 55.8 12 0.00025 29.3 2.7 18 24-41 2-25 (109)
14 COG4459 NapE Periplasmic nitra 55.8 22 0.00048 26.1 3.9 28 12-39 10-37 (62)
15 PF10721 DUF2514: Protein of u 55.6 13 0.00029 30.8 3.2 18 20-37 2-19 (162)
16 COG4095 Uncharacterized conser 54.9 13 0.00027 29.0 2.7 30 10-41 29-58 (89)
17 PF05366 Sarcolipin: Sarcolipi 54.8 14 0.0003 23.8 2.4 14 23-36 12-25 (31)
18 cd00922 Cyt_c_Oxidase_IV Cytoc 54.5 23 0.0005 28.7 4.3 38 4-41 60-97 (136)
19 KOG3500 Vacuolar H+-ATPase V0 53.7 12 0.00027 28.9 2.5 17 25-41 37-53 (84)
20 PF05624 LSR: Lipolysis stimul 53.6 11 0.00024 26.6 2.0 16 19-35 9-24 (49)
21 PF14155 DUF4307: Domain of un 53.4 13 0.00029 28.9 2.7 25 14-38 3-27 (112)
22 PF06716 DUF1201: Protein of u 53.0 15 0.00034 26.1 2.7 17 21-37 13-32 (54)
23 COG3610 Uncharacterized conser 51.9 17 0.00037 30.2 3.2 22 20-41 28-49 (156)
24 PF03911 Sec61_beta: Sec61beta 51.7 16 0.00035 24.1 2.5 21 17-37 18-38 (41)
25 PF12273 RCR: Chitin synthesis 50.4 13 0.00029 28.9 2.3 26 22-47 3-28 (130)
26 COG3087 FtsN Cell division pro 49.5 23 0.00049 32.3 3.9 34 3-38 1-36 (264)
27 PRK14473 F0F1 ATP synthase sub 49.3 25 0.00053 28.1 3.7 32 18-49 11-43 (164)
28 PRK10234 DNA-binding transcrip 48.9 16 0.00035 29.3 2.6 17 25-41 4-26 (118)
29 PRK10893 lipopolysaccharide ex 48.9 17 0.00037 30.6 2.8 25 18-42 3-27 (192)
30 PF11780 DUF3318: Protein of u 47.0 19 0.00041 29.7 2.7 26 18-43 99-124 (146)
31 PF13268 DUF4059: Protein of u 46.9 19 0.00041 27.2 2.5 22 25-46 18-39 (72)
32 PRK10807 paraquat-inducible pr 46.9 17 0.00037 35.3 2.8 20 26-45 25-44 (547)
33 PF11755 DUF3311: Protein of u 46.8 21 0.00045 25.6 2.6 25 16-40 27-53 (66)
34 PF10675 DUF2489: Protein of u 45.8 15 0.00032 29.6 1.9 19 25-43 1-19 (131)
35 PF10624 TraS: Plasmid conjuga 45.7 24 0.00051 30.0 3.1 19 22-40 32-50 (164)
36 PF07172 GRP: Glycine rich pro 45.3 38 0.00082 26.0 4.0 22 20-41 4-25 (95)
37 PF06682 DUF1183: Protein of u 45.0 17 0.00037 33.6 2.4 23 20-42 156-178 (318)
38 PRK07352 F0F1 ATP synthase sub 44.9 21 0.00046 28.9 2.7 20 20-39 24-43 (174)
39 PF14316 DUF4381: Domain of un 44.8 26 0.00057 27.7 3.2 17 25-41 27-43 (146)
40 PF02936 COX4: Cytochrome c ox 42.6 18 0.00039 29.5 2.0 38 4-41 60-97 (142)
41 PF04148 Erv26: Transmembrane 42.3 22 0.00047 31.2 2.5 19 18-36 134-152 (211)
42 COG1426 Predicted transcriptio 41.6 25 0.00055 31.4 2.9 23 18-40 106-128 (284)
43 PRK14003 potassium-transportin 40.9 30 0.00064 30.1 3.1 23 19-41 7-29 (194)
44 PF01708 Gemini_mov: Geminivir 40.9 12 0.00026 29.3 0.7 22 18-39 36-57 (91)
45 PF06936 Selenoprotein_S: Sele 40.7 9.2 0.0002 32.8 0.0 15 25-39 39-53 (190)
46 TIGR03063 srtB_target sortase 40.0 30 0.00065 21.9 2.2 18 22-39 11-28 (29)
47 KOG3269 Predicted membrane pro 39.8 30 0.00065 30.0 3.0 22 22-43 111-132 (180)
48 cd00927 Cyt_c_Oxidase_VIc Cyto 39.3 47 0.001 24.8 3.5 34 18-51 14-47 (70)
49 PRK09731 putative general secr 39.2 29 0.00063 29.5 2.8 21 21-41 41-61 (178)
50 PF07226 DUF1422: Protein of u 39.1 34 0.00073 27.9 3.0 21 21-41 93-113 (117)
51 PLN03221 rapid alkalinization 39.1 32 0.0007 28.7 2.9 27 18-44 9-35 (137)
52 PF07330 DUF1467: Protein of u 38.5 43 0.00093 25.5 3.3 26 15-40 45-70 (85)
53 PF00672 HAMP: HAMP domain; I 38.4 44 0.00095 22.0 3.1 21 23-43 3-23 (70)
54 PF02104 SURF1: SURF1 family; 37.4 24 0.00052 29.1 2.0 23 26-48 2-25 (212)
55 PRK06231 F0F1 ATP synthase sub 36.8 47 0.001 28.2 3.7 31 19-49 52-83 (205)
56 PF10498 IFT57: Intra-flagella 36.5 15 0.00032 34.2 0.7 56 21-81 38-93 (359)
57 PRK14794 lipoprotein signal pe 36.5 35 0.00075 27.6 2.7 22 21-42 103-124 (136)
58 PRK11056 hypothetical protein; 36.4 39 0.00084 27.7 3.0 21 21-41 93-113 (120)
59 PF03896 TRAP_alpha: Transloco 36.4 39 0.00084 30.7 3.3 32 16-47 202-236 (285)
60 PF00287 Na_K-ATPase: Sodium / 35.9 29 0.00063 31.2 2.4 15 25-39 51-65 (289)
61 PF05493 ATP_synt_H: ATP synth 35.9 32 0.00069 24.8 2.2 19 22-40 29-48 (65)
62 PF11286 DUF3087: Protein of u 35.2 38 0.00081 28.9 2.8 20 22-41 53-72 (165)
63 PRK13461 F0F1 ATP synthase sub 35.1 39 0.00084 26.9 2.8 29 20-48 10-39 (159)
64 PF13544 N_methyl_2: Type IV p 35.0 41 0.00088 20.9 2.3 25 7-31 6-30 (31)
65 TIGR02588 conserved hypothetic 34.8 40 0.00086 27.5 2.8 27 20-46 7-33 (122)
66 PRK00888 ftsB cell division pr 34.5 41 0.0009 25.9 2.7 18 24-41 4-21 (105)
67 PF12821 DUF3815: Protein of u 33.7 52 0.0011 25.5 3.2 22 20-41 21-42 (130)
68 PRK13481 glycosyltransferase; 33.4 48 0.001 29.4 3.3 29 14-42 4-32 (232)
69 KOG0828 Predicted E3 ubiquitin 33.4 29 0.00064 34.7 2.2 15 25-39 515-529 (636)
70 PF11743 DUF3301: Protein of u 33.4 56 0.0012 24.8 3.3 22 24-45 3-24 (97)
71 PF11460 DUF3007: Protein of u 33.2 43 0.00094 26.7 2.7 21 16-36 31-51 (104)
72 KOG4490 Translocon-associated 33.1 27 0.00059 30.1 1.7 38 3-41 15-52 (183)
73 PF15122 TMEM206: TMEM206 prot 32.8 39 0.00085 31.2 2.7 18 24-41 20-37 (298)
74 COG4856 Uncharacterized protei 32.6 28 0.0006 33.5 1.8 17 20-36 8-25 (403)
75 TIGR01843 type_I_hlyD type I s 32.5 45 0.00097 29.2 3.0 21 17-37 4-24 (423)
76 PF15179 Myc_target_1: Myc tar 32.0 35 0.00076 30.0 2.2 21 63-83 107-133 (197)
77 PF05545 FixQ: Cbb3-type cytoc 32.0 50 0.0011 21.9 2.5 15 22-36 16-30 (49)
78 PRK14125 cell division suppres 31.8 53 0.0012 25.3 3.0 22 20-41 8-29 (103)
79 PF12321 DUF3634: Protein of u 31.7 34 0.00074 27.3 1.9 19 23-41 3-21 (108)
80 PF14813 NADH_B2: NADH dehydro 31.5 82 0.0018 23.5 3.8 29 17-45 16-45 (71)
81 PRK13618 psbV cytochrome c-550 31.2 51 0.0011 27.8 3.0 18 19-36 2-19 (163)
82 PF10144 SMP_2: Bacterial viru 31.0 58 0.0013 28.2 3.4 23 17-39 8-30 (210)
83 PRK09173 F0F1 ATP synthase sub 31.0 70 0.0015 25.4 3.6 29 21-49 7-37 (159)
84 COG0370 FeoB Fe2+ transport sy 30.8 27 0.00058 35.4 1.4 28 12-40 495-522 (653)
85 PF14004 DUF4227: Protein of u 30.4 73 0.0016 23.7 3.4 22 18-39 2-23 (71)
86 PF13127 DUF3955: Protein of u 30.3 42 0.0009 24.1 2.0 21 25-45 9-29 (63)
87 PF10688 Imp-YgjV: Bacterial i 30.1 45 0.00099 27.3 2.5 18 23-40 116-133 (163)
88 TIGR02223 ftsN cell division p 29.9 43 0.00093 30.5 2.5 11 71-81 73-83 (298)
89 COG3671 Predicted membrane pro 29.9 57 0.0012 26.9 2.9 19 24-42 89-107 (125)
90 PF07359 LEAP-2: Liver-express 29.8 18 0.00038 27.7 0.0 23 21-43 2-24 (77)
91 PF13906 AA_permease_C: C-term 29.8 30 0.00064 23.9 1.1 19 24-42 33-51 (51)
92 PRK03598 putative efflux pump 29.7 20 0.00044 31.2 0.4 18 22-39 10-27 (331)
93 PF05568 ASFV_J13L: African sw 29.7 67 0.0015 27.8 3.5 20 29-48 41-60 (189)
94 PF06796 NapE: Periplasmic nit 29.3 79 0.0017 22.7 3.2 12 23-34 18-29 (56)
95 TIGR00445 mraY phospho-N-acety 29.2 64 0.0014 29.2 3.4 27 10-36 85-113 (321)
96 PRK11246 hypothetical protein; 29.0 54 0.0012 29.1 2.8 26 16-41 7-32 (218)
97 PRK07353 F0F1 ATP synthase sub 28.4 61 0.0013 24.9 2.8 29 21-49 11-40 (140)
98 TIGR03876 cas_csaX CRISPR-asso 28.3 43 0.00093 30.5 2.2 21 14-42 166-186 (281)
99 PLN03112 cytochrome P450 famil 27.8 55 0.0012 29.9 2.8 21 21-41 4-24 (514)
100 PF14875 PIP49_N: N-term cyste 27.6 24 0.00052 29.4 0.5 27 13-39 2-28 (158)
101 PF11808 DUF3329: Domain of un 27.5 79 0.0017 23.5 3.2 14 28-41 37-50 (90)
102 TIGR01107 Na_K_ATPase_bet Sodi 27.5 57 0.0012 29.7 2.8 16 28-43 53-68 (289)
103 PTZ00382 Variant-specific surf 27.3 24 0.00051 27.0 0.3 23 16-38 70-92 (96)
104 PRK13460 F0F1 ATP synthase sub 27.3 88 0.0019 25.4 3.7 31 19-49 20-51 (173)
105 cd01324 cbb3_Oxidase_CcoQ Cyto 27.2 64 0.0014 21.9 2.4 11 26-36 21-31 (48)
106 PRK13254 cytochrome c-type bio 27.2 74 0.0016 26.2 3.2 21 18-38 8-28 (148)
107 PF11143 DUF2919: Protein of u 27.2 77 0.0017 26.1 3.3 29 16-44 83-114 (149)
108 PF15207 TMEM240: TMEM240 fami 27.0 52 0.0011 28.2 2.3 15 23-37 90-105 (180)
109 PF14089 KbaA: KinB-signalling 27.0 67 0.0014 27.8 3.0 23 17-39 68-90 (180)
110 PRK11486 flagellar biosynthesi 26.7 59 0.0013 26.4 2.5 10 27-36 30-39 (124)
111 KOG1313 DHHC-type Zn-finger pr 26.7 71 0.0015 29.8 3.3 27 19-45 60-87 (309)
112 KOG1623 Multitransmembrane pro 26.6 58 0.0013 29.2 2.7 21 21-41 161-181 (243)
113 PF05297 Herpes_LMP1: Herpesvi 26.4 22 0.00047 33.6 0.0 20 22-41 170-189 (381)
114 PRK09917 hypothetical protein; 26.4 68 0.0015 26.4 2.9 23 19-41 31-53 (157)
115 PF02937 COX6C: Cytochrome c o 26.3 1.1E+02 0.0023 22.7 3.6 36 15-50 10-48 (73)
116 PRK01294 lipase chaperone; Pro 26.3 61 0.0013 29.8 2.8 23 18-40 2-24 (336)
117 PRK08475 F0F1 ATP synthase sub 26.3 94 0.002 25.4 3.7 31 19-49 26-57 (167)
118 PRK15071 lipopolysaccharide AB 26.3 1.1E+02 0.0023 27.0 4.3 35 10-46 294-328 (356)
119 TIGR02972 TMAO_torE trimethyla 26.2 82 0.0018 22.0 2.8 15 21-35 8-22 (47)
120 PF04505 Dispanin: Interferon- 26.1 55 0.0012 24.1 2.1 22 16-37 60-81 (82)
121 KOG4595 Uncharacterized conser 26.1 76 0.0016 26.6 3.1 30 17-46 43-75 (139)
122 KOG4826 C-8,7 sterol isomerase 26.1 65 0.0014 28.9 2.9 19 19-37 29-47 (229)
123 PF12606 RELT: Tumour necrosis 26.0 71 0.0015 22.3 2.5 15 21-35 8-22 (50)
124 PF06116 RinB: Transcriptional 25.9 1E+02 0.0022 22.2 3.2 22 18-39 1-25 (53)
125 PF11446 DUF2897: Protein of u 25.8 90 0.0019 22.1 3.0 24 22-45 6-29 (55)
126 PF00957 Synaptobrevin: Synapt 25.7 87 0.0019 22.5 3.0 19 19-37 66-84 (89)
127 PRK09506 mrcB bifunctional gly 25.6 85 0.0018 32.4 4.0 16 22-37 67-84 (830)
128 PRK07352 F0F1 ATP synthase sub 25.1 84 0.0018 25.5 3.2 27 16-42 16-42 (174)
129 PF06724 DUF1206: Domain of Un 25.1 85 0.0019 22.0 2.8 12 27-38 56-67 (73)
130 PF01554 MatE: MatE; InterPro 25.1 1.5E+02 0.0033 21.8 4.3 36 6-41 58-94 (162)
131 PF07022 Phage_CI_repr: Bacter 24.8 60 0.0013 22.5 2.0 20 18-37 40-60 (66)
132 PF12553 DUF3742: Protein of u 24.8 69 0.0015 22.5 2.3 15 26-40 5-19 (54)
133 PF11833 DUF3353: Protein of u 24.7 66 0.0014 27.5 2.6 17 22-38 118-134 (194)
134 PF10812 DUF2561: Protein of u 24.7 49 0.0011 29.3 1.8 12 27-38 23-36 (207)
135 PF14715 FixP_N: N-terminal do 24.6 83 0.0018 21.8 2.6 20 21-40 26-45 (51)
136 PF03745 DUF309: Domain of unk 24.5 1.2E+02 0.0025 21.4 3.4 17 19-35 33-49 (62)
137 TIGR02808 short_TIGR02808 cons 23.9 67 0.0014 22.1 2.0 10 28-37 28-37 (42)
138 PRK06279 putative monovalent c 23.8 73 0.0016 24.4 2.4 20 25-44 3-22 (100)
139 PRK11246 hypothetical protein; 23.5 1E+02 0.0022 27.4 3.6 29 20-48 162-190 (218)
140 TIGR03745 conj_TIGR03745 integ 23.5 55 0.0012 26.1 1.8 12 26-37 87-98 (104)
141 PLN02966 cytochrome P450 83A1 23.5 53 0.0012 30.0 1.9 23 23-45 6-28 (502)
142 PF00858 ASC: Amiloride-sensit 23.3 1.1E+02 0.0023 26.7 3.6 33 13-45 15-47 (439)
143 KOG1832 HIV-1 Vpr-binding prot 23.1 90 0.002 33.9 3.6 8 65-72 1394-1401(1516)
144 PHA03049 IMV membrane protein; 23.0 1.3E+02 0.0029 22.5 3.5 21 26-49 5-29 (68)
145 PF15221 LEP503: Lens epitheli 22.9 1.5E+02 0.0032 21.7 3.7 35 5-39 13-59 (61)
146 PF12955 DUF3844: Domain of un 22.9 87 0.0019 24.8 2.7 18 23-40 76-93 (103)
147 PRK06298 type III secretion sy 22.8 87 0.0019 29.1 3.2 23 19-41 141-163 (356)
148 PF10808 DUF2542: Protein of u 22.8 25 0.00054 27.0 -0.3 12 26-37 66-77 (79)
149 TIGR02973 nitrate_rd_NapE peri 22.8 74 0.0016 21.7 2.0 13 23-35 5-17 (42)
150 PF07265 TAP35_44: Tapetum spe 22.6 68 0.0015 26.1 2.1 27 18-44 3-29 (119)
151 PRK10775 cell division protein 22.6 1E+02 0.0022 27.3 3.5 29 12-40 19-47 (276)
152 PRK07033 hypothetical protein; 22.5 1.2E+02 0.0027 28.6 4.1 28 14-41 225-252 (427)
153 PF11807 DUF3328: Domain of un 22.5 1.8E+02 0.0038 22.7 4.4 11 22-32 14-24 (217)
154 CHL00019 atpF ATP synthase CF0 22.4 85 0.0018 25.7 2.7 29 20-48 29-58 (184)
155 PF09574 DUF2374: Protein of 22.3 75 0.0016 21.8 2.0 10 28-37 28-37 (42)
156 KOG1397 Ca2+/H+ antiporter VCX 22.3 78 0.0017 30.9 2.8 25 17-41 232-256 (441)
157 PF10127 Nuc-transf: Predicted 22.2 53 0.0011 27.8 1.5 21 16-36 145-165 (247)
158 TIGR01655 yxeA_fam conserved h 22.2 47 0.001 25.8 1.2 15 23-37 9-23 (114)
159 COG0711 AtpF F0F1-type ATP syn 22.2 88 0.0019 25.5 2.7 17 24-40 11-27 (161)
160 PF10066 DUF2304: Uncharacteri 22.2 1.2E+02 0.0026 23.2 3.4 21 25-45 9-29 (115)
161 PF01307 Plant_vir_prot: Plant 22.1 1E+02 0.0023 24.1 3.0 18 23-40 73-90 (104)
162 PF04246 RseC_MucC: Positive r 21.8 1.1E+02 0.0024 23.6 3.2 28 22-49 100-127 (135)
163 PF12072 DUF3552: Domain of un 21.8 1.2E+02 0.0026 25.4 3.6 24 22-45 3-26 (201)
164 PRK15136 multidrug efflux syst 21.8 1.2E+02 0.0025 27.7 3.8 13 25-37 29-41 (390)
165 PF12729 4HB_MCP_1: Four helix 21.8 1.4E+02 0.003 21.9 3.5 19 25-43 16-34 (181)
166 PF06667 PspB: Phage shock pro 21.7 98 0.0021 23.1 2.7 17 23-39 10-26 (75)
167 PRK14472 F0F1 ATP synthase sub 21.6 91 0.002 25.3 2.7 30 19-48 22-52 (175)
168 PF03818 MadM: Malonate/sodium 21.5 1.2E+02 0.0026 22.2 3.0 23 23-45 14-36 (60)
169 PRK13735 conjugal transfer mat 21.5 91 0.002 32.9 3.3 22 20-41 30-51 (942)
170 PF06638 Strabismus: Strabismu 21.5 86 0.0019 31.1 2.9 25 25-49 173-197 (505)
171 PF12354 Internalin_N: Bacteri 21.4 31 0.00068 24.4 0.0 21 16-36 4-24 (57)
172 PF06638 Strabismus: Strabismu 21.4 71 0.0015 31.6 2.4 26 12-38 128-153 (505)
173 TIGR03368 cellulose_yhjU cellu 21.4 92 0.002 31.0 3.1 24 18-41 40-63 (518)
174 PF11658 DUF3260: Protein of u 21.3 86 0.0019 31.1 2.9 22 19-40 40-61 (518)
175 PF11120 DUF2636: Protein of u 21.2 1.1E+02 0.0024 22.3 2.8 27 19-45 3-30 (62)
176 TIGR01144 ATP_synt_b ATP synth 21.2 84 0.0018 24.4 2.4 29 21-49 1-30 (147)
177 TIGR03064 sortase_srtB sortase 21.1 1.1E+02 0.0023 26.8 3.2 18 19-37 2-19 (232)
178 PF08693 SKG6: Transmembrane a 21.1 45 0.00097 22.5 0.7 16 22-37 21-36 (40)
179 PRK11469 hypothetical protein; 21.0 1E+02 0.0022 25.9 3.0 21 19-39 68-88 (188)
180 PLN02687 flavonoid 3'-monooxyg 21.0 76 0.0017 29.2 2.4 25 22-47 7-31 (517)
181 PF04973 NMN_transporter: Nico 21.0 1.6E+02 0.0035 23.9 4.1 35 10-44 74-108 (181)
182 PRK14473 F0F1 ATP synthase sub 20.9 1.5E+02 0.0032 23.7 3.7 26 16-41 5-30 (164)
183 PF03083 MtN3_slv: Sugar efflu 20.8 50 0.0011 23.5 0.9 22 20-41 35-56 (87)
184 PRK10332 hypothetical protein; 20.8 1.8E+02 0.0039 23.2 4.2 28 13-40 7-34 (107)
185 PF11345 DUF3147: Protein of u 20.8 78 0.0017 24.6 2.1 18 22-39 84-101 (108)
186 COG3008 PqiB Paraquat-inducibl 20.8 94 0.002 31.1 3.1 20 26-45 28-47 (553)
187 PRK13109 flhB flagellar biosyn 20.8 1E+02 0.0022 28.7 3.2 23 19-41 149-171 (358)
188 COG2383 Uncharacterized conser 20.8 90 0.0019 25.2 2.4 24 16-39 33-57 (109)
189 TIGR00859 ENaC sodium channel 20.8 1.2E+02 0.0026 29.8 3.8 29 14-42 24-52 (595)
190 PF06624 RAMP4: Ribosome assoc 20.7 50 0.0011 23.9 0.9 29 14-42 32-60 (63)
191 PF01066 CDP-OH_P_transf: CDP- 20.5 1.2E+02 0.0027 22.1 3.0 34 10-43 53-87 (101)
192 PF09584 Phageshock_PspD: Phag 20.5 98 0.0021 23.1 2.4 28 12-39 1-36 (66)
193 PRK10856 cytoskeletal protein 20.4 95 0.002 28.4 2.9 7 32-38 129-135 (331)
194 KOG3916 UDP-Gal:glucosylcerami 20.4 63 0.0014 30.9 1.7 30 1-37 1-33 (372)
195 PF00737 PsbH: Photosystem II 20.4 1.2E+02 0.0025 21.7 2.7 39 4-42 8-48 (52)
196 PF09769 ApoO: Apolipoprotein 20.4 78 0.0017 25.3 2.1 26 15-40 113-138 (158)
No 1
>PF15339 Afaf: Acrosome formation-associated factor
Probab=82.85 E-value=1.2 Score=38.79 Aligned_cols=25 Identities=20% Similarity=0.340 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhh
Q 029466 21 HFLQICLLLAICFWLLHQVRKSYDR 45 (193)
Q Consensus 21 h~LQI~lLl~VciWLlYQvkhS~dk 45 (193)
.+|-.++|||+|+-.||-|||-..|
T Consensus 140 Tl~lfv~Ll~~c~atlyklk~l~~k 164 (200)
T PF15339_consen 140 TLFLFVILLAFCSATLYKLKHLSYK 164 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccc
Confidence 3444466899999999999997666
No 2
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=80.85 E-value=1.9 Score=33.19 Aligned_cols=22 Identities=23% Similarity=0.308 Sum_probs=16.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHhh
Q 029466 20 KHFLQICLLLAICFWLLHQVRK 41 (193)
Q Consensus 20 Kh~LQI~lLl~VciWLlYQvkh 41 (193)
..+.=++|+||.|.|+.||-..
T Consensus 5 ~~~~l~~lvl~L~~~l~~qs~~ 26 (110)
T PF10828_consen 5 IYIALAVLVLGLGGWLWYQSQR 26 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444578889999999998644
No 3
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=80.04 E-value=1.9 Score=31.87 Aligned_cols=19 Identities=16% Similarity=0.483 Sum_probs=15.1
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 029466 20 KHFLQICLLLAICFWLLHQ 38 (193)
Q Consensus 20 Kh~LQI~lLl~VciWLlYQ 38 (193)
--++-++++++||+|+||.
T Consensus 72 li~~~~~~f~~~v~yI~~r 90 (92)
T PF03908_consen 72 LIFFAFLFFLLVVLYILWR 90 (92)
T ss_pred HHHHHHHHHHHHHHHHhhh
Confidence 3456678899999999985
No 4
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=76.01 E-value=3.5 Score=31.67 Aligned_cols=22 Identities=18% Similarity=0.218 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhh
Q 029466 24 QICLLLAICFWLLHQVRKSYDR 45 (193)
Q Consensus 24 QI~lLl~VciWLlYQvkhS~dk 45 (193)
-++++++||.|+.||+++....
T Consensus 10 ~~~v~~~i~~y~~~k~~ka~~~ 31 (87)
T PF10883_consen 10 VGAVVALILAYLWWKVKKAKKQ 31 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3567778888999999997554
No 5
>PF11190 DUF2976: Protein of unknown function (DUF2976); InterPro: IPR021356 Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in a region flanked by markers of conjugative transfer and/or transposition.
Probab=70.84 E-value=3.3 Score=31.76 Aligned_cols=18 Identities=28% Similarity=0.573 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 029466 21 HFLQICLLLAICFWLLHQ 38 (193)
Q Consensus 21 h~LQI~lLl~VciWLlYQ 38 (193)
++.-=++||.+||||+.+
T Consensus 66 ~~vVGvvLlv~viwLl~~ 83 (87)
T PF11190_consen 66 TVVVGVVLLVFVIWLLTK 83 (87)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344456788999999976
No 6
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=68.14 E-value=5.1 Score=30.56 Aligned_cols=15 Identities=33% Similarity=0.782 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHH
Q 029466 22 FLQICLLLAICFWLL 36 (193)
Q Consensus 22 ~LQI~lLl~VciWLl 36 (193)
+|-+.+++|||||.+
T Consensus 11 aliv~~iiaIvvW~i 25 (81)
T PF00558_consen 11 ALIVALIIAIVVWTI 25 (81)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 567788899999998
No 7
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=66.34 E-value=7.8 Score=27.24 Aligned_cols=27 Identities=22% Similarity=0.560 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHH---HHHH-Hhhhhhhhh
Q 029466 21 HFLQICLLLAICFW---LLHQ-VRKSYDRKK 47 (193)
Q Consensus 21 h~LQI~lLl~VciW---LlYQ-vkhS~dkk~ 47 (193)
..|-++++|||..| |+|| |+.=..||+
T Consensus 7 ~iFsvvIil~If~~iGl~IyQkikqIrgKkk 37 (49)
T PF11044_consen 7 TIFSVVIILGIFAWIGLSIYQKIKQIRGKKK 37 (49)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 56788899999888 5888 344445543
No 8
>COG4068 Uncharacterized protein containing a Zn-ribbon [Function unknown]
Probab=62.75 E-value=3.5 Score=30.39 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=15.5
Q ss_pred cccCcchhHHHHHHHHHHHHHHHHH
Q 029466 13 RSKGFKVKHFLQICLLLAICFWLLH 37 (193)
Q Consensus 13 RsKG~kvKh~LQI~lLl~VciWLlY 37 (193)
|-|-|.+--. -|+.||+|.+||.|
T Consensus 39 R~r~~~~~~~-li~aLi~v~vvL~~ 62 (64)
T COG4068 39 RQRNFMILMF-LILALILVMVVLPY 62 (64)
T ss_pred HHHHHHHHHH-HHHHHHHHHHhhcc
Confidence 4445555433 35556889999987
No 9
>COG5393 Predicted membrane protein [Function unknown]
Probab=62.31 E-value=8.3 Score=31.85 Aligned_cols=21 Identities=38% Similarity=0.686 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhh
Q 029466 23 LQICLLLAICFWLLHQVRKSY 43 (193)
Q Consensus 23 LQI~lLl~VciWLlYQvkhS~ 43 (193)
+-.+|-+.-|||-|||..||-
T Consensus 91 vl~vl~~i~ciW~lrks~~s~ 111 (131)
T COG5393 91 VLLVLALIGCIWTLRKSRKST 111 (131)
T ss_pred HHHHHHHHHHHHHHHHHHhHh
Confidence 334455567999999999974
No 10
>PF06423 GWT1: GWT1; InterPro: IPR009447 Glycosylphosphatidylinositol (GPI) is a conserved post-translational modification to anchor cell surface proteins to plasma membrane in eukaryotes. GWT1 is involved in GPI anchor biosynthesis; it is required for inositol acylation in yeast [].; GO: 0016746 transferase activity, transferring acyl groups, 0006506 GPI anchor biosynthetic process, 0005789 endoplasmic reticulum membrane, 0016021 integral to membrane
Probab=61.97 E-value=12 Score=29.80 Aligned_cols=31 Identities=29% Similarity=0.540 Sum_probs=21.3
Q ss_pred ccCcchhHHHHHHHHHHHHHHHHHHHhhhhhh
Q 029466 14 SKGFKVKHFLQICLLLAICFWLLHQVRKSYDR 45 (193)
Q Consensus 14 sKG~kvKh~LQI~lLl~VciWLlYQvkhS~dk 45 (193)
++...+|.++++ +++++++|++|.+-+++..
T Consensus 37 ~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~ 67 (136)
T PF06423_consen 37 SRRQWIKLLIKL-LILSFIFWALYYLLNSYIE 67 (136)
T ss_pred chhHHHHHHHHH-HHHHHHHHHHHHHHHhCCC
Confidence 345556666555 4588999999999885443
No 11
>TIGR03779 Bac_Flav_CT_M Bacteroides conjugative transposon TraM protein. Members of this protein family are designated TraM and are found in a proposed transfer region of a class of conjugative transposon found in the Bacteroides lineage.
Probab=57.50 E-value=6.6 Score=37.43 Aligned_cols=16 Identities=19% Similarity=0.449 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 029466 23 LQICLLLAICFWLLHQ 38 (193)
Q Consensus 23 LQI~lLl~VciWLlYQ 38 (193)
.-+|||++.|+||||.
T Consensus 12 ~lm~l~flg~~wlIF~ 27 (410)
T TIGR03779 12 PLMGLVFLGSLWLIFA 27 (410)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 4578888899999996
No 12
>PRK01253 preprotein translocase subunit SecG; Reviewed
Probab=57.39 E-value=4.5 Score=28.53 Aligned_cols=22 Identities=27% Similarity=0.365 Sum_probs=18.7
Q ss_pred cchhHHHHHHHHHHHHHHHHHH
Q 029466 17 FKVKHFLQICLLLAICFWLLHQ 38 (193)
Q Consensus 17 ~kvKh~LQI~lLl~VciWLlYQ 38 (193)
+..|++|-++++++|++|+|+=
T Consensus 29 i~P~~Vi~~~~~~~~~v~~L~~ 50 (54)
T PRK01253 29 IDPKTVIAIGLALGIFVLVLNA 50 (54)
T ss_pred cCCeeeeeeHHHHHHHHHHHHh
Confidence 3458899999999999999864
No 13
>PF06923 GutM: Glucitol operon activator protein (GutM); InterPro: IPR009693 This family consists of several glucitol operon activator (GutM) proteins. Expression of the glucitol (gut) operon in Escherichia coli is regulated by an unusual, complex system, which consists of an activator (encoded by the gutM gene) and a repressor (encoded by the gutR gene) in addition to the cAMP-CRP complex (CRP, cAMP receptor protein). Synthesis of the mRNA, which initiates at the promoter specific to the gutR gene, occurs within the gutM gene. Expressional control of the gut operon appears to occur as a consequence of the antagonistic action of the products of the autogenously regulated gutM and gutR genes [].
Probab=55.84 E-value=12 Score=29.26 Aligned_cols=18 Identities=33% Similarity=0.742 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHH------HHHhh
Q 029466 24 QICLLLAICFWLL------HQVRK 41 (193)
Q Consensus 24 QI~lLl~VciWLl------YQvkh 41 (193)
++++++++++||| +|+||
T Consensus 2 ~~lii~~~~~~~lQ~~l~~~Qik~ 25 (109)
T PF06923_consen 2 IILIILLVIAWLLQILLGWFQIKN 25 (109)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888889986 89988
No 14
>COG4459 NapE Periplasmic nitrate reductase system, NapE component [Energy production and conversion]
Probab=55.84 E-value=22 Score=26.11 Aligned_cols=28 Identities=18% Similarity=0.152 Sum_probs=20.8
Q ss_pred ccccCcchhHHHHHHHHHHHHHHHHHHH
Q 029466 12 LRSKGFKVKHFLQICLLLAICFWLLHQV 39 (193)
Q Consensus 12 qRsKG~kvKh~LQI~lLl~VciWLlYQv 39 (193)
.+-|+.+-+.-+..||.|++|||=|.-|
T Consensus 10 ~~v~~~~~r~e~itFl~la~~l~PilsV 37 (62)
T COG4459 10 AKVKPSEKRSEWITFLFLAFGLFPILSV 37 (62)
T ss_pred ccCCcchhhhHHHHHHHHHHHHHHHHHH
Confidence 3456777777888889999998866443
No 15
>PF10721 DUF2514: Protein of unknown function (DUF2514); InterPro: IPR019659 This protein family is conserved in bacteria and some viruses. The function is not known.
Probab=55.60 E-value=13 Score=30.81 Aligned_cols=18 Identities=28% Similarity=0.375 Sum_probs=12.1
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 029466 20 KHFLQICLLLAICFWLLH 37 (193)
Q Consensus 20 Kh~LQI~lLl~VciWLlY 37 (193)
|.++-|+||+++++|.+|
T Consensus 2 ~~l~~vllla~~~~~g~y 19 (162)
T PF10721_consen 2 KQLAIVLLLAAALLWGAY 19 (162)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555555568899998
No 16
>COG4095 Uncharacterized conserved protein [Function unknown]
Probab=54.89 E-value=13 Score=29.04 Aligned_cols=30 Identities=20% Similarity=0.320 Sum_probs=21.4
Q ss_pred ccccccCcchhHHHHHHHHHHHHHHHHHHHhh
Q 029466 10 KNLRSKGFKVKHFLQICLLLAICFWLLHQVRK 41 (193)
Q Consensus 10 RnqRsKG~kvKh~LQI~lLl~VciWLlYQvkh 41 (193)
|+++++++ --..-|++-+|.|+||+|=+--
T Consensus 29 ktK~t~~I--sl~~fii~~ia~~lwliygILi 58 (89)
T COG4095 29 KTKNTASI--SLPMFIILNIALFLWLIYGILI 58 (89)
T ss_pred hccccccc--cHHHHHHHHHHHHHHHHHHHHH
Confidence 34555544 4466788899999999997654
No 17
>PF05366 Sarcolipin: Sarcolipin; InterPro: IPR008028 Sarcolipin is a 31 amino acid integral membrane protein that regulates Ca-ATPase activity in skeletal muscle [].; GO: 0030234 enzyme regulator activity, 0016020 membrane; PDB: 1JDM_A.
Probab=54.75 E-value=14 Score=23.78 Aligned_cols=14 Identities=36% Similarity=0.880 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHH
Q 029466 23 LQICLLLAICFWLL 36 (193)
Q Consensus 23 LQI~lLl~VciWLl 36 (193)
|-|+|+.++.+|||
T Consensus 12 ftvvlitvilmwll 25 (31)
T PF05366_consen 12 FTVVLITVILMWLL 25 (31)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHH
Confidence 55677778888987
No 18
>cd00922 Cyt_c_Oxidase_IV Cytochrome c oxidase subunit IV. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit IV is the largest of the nuclear-encoded subunits. It binds ATP at the matrix side, leading to an allosteric inhibition of enzyme activity at high intramitochondrial ATP/ADP ratios. In mammals, subunit IV has a lung-specific isoform and a ubiquitously expressed isoform.
Probab=54.53 E-value=23 Score=28.70 Aligned_cols=38 Identities=11% Similarity=0.038 Sum_probs=29.3
Q ss_pred cccCCCccccccCcchhHHHHHHHHHHHHHHHHHHHhh
Q 029466 4 LKQSSSKNLRSKGFKVKHFLQICLLLAICFWLLHQVRK 41 (193)
Q Consensus 4 lrqsssRnqRsKG~kvKh~LQI~lLl~VciWLlYQvkh 41 (193)
|.++..|-+...|=-.+.+.-++++|+|++|+++-+++
T Consensus 60 fg~~~~e~~~~~~ewk~v~~~~~~~i~~s~~~~~~~r~ 97 (136)
T cd00922 60 FGETGPEMNAPTGEWKTVFGGVLAFIGITGVIFGLQRA 97 (136)
T ss_pred hccccccccCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677788888886666666778888999988887776
No 19
>KOG3500 consensus Vacuolar H+-ATPase V0 sector, subunit M9.7 (M9.2) [Energy production and conversion]
Probab=53.71 E-value=12 Score=28.88 Aligned_cols=17 Identities=29% Similarity=0.755 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHhh
Q 029466 25 ICLLLAICFWLLHQVRK 41 (193)
Q Consensus 25 I~lLl~VciWLlYQvkh 41 (193)
+++|.|||-||.+-+-.
T Consensus 37 ~lvlTAVCCwlfWli~y 53 (84)
T KOG3500|consen 37 MLVLTAVCCWLFWLIVY 53 (84)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45677999999887654
No 20
>PF05624 LSR: Lipolysis stimulated receptor (LSR); InterPro: IPR008664 This domain consists of mammalian LISCH7 protein homologues. LISCH7 is a liver-specific BHLH-ZIP transcription factor.
Probab=53.62 E-value=11 Score=26.56 Aligned_cols=16 Identities=38% Similarity=0.843 Sum_probs=11.7
Q ss_pred hhHHHHHHHHHHHHHHH
Q 029466 19 VKHFLQICLLLAICFWL 35 (193)
Q Consensus 19 vKh~LQI~lLl~VciWL 35 (193)
|--+|-++||+||| |-
T Consensus 9 ilg~~ll~~LigiC-wC 24 (49)
T PF05624_consen 9 ILGALLLLLLIGIC-WC 24 (49)
T ss_pred HHHHHHHHHHHHHH-HH
Confidence 44567788889998 73
No 21
>PF14155 DUF4307: Domain of unknown function (DUF4307)
Probab=53.39 E-value=13 Score=28.86 Aligned_cols=25 Identities=8% Similarity=0.178 Sum_probs=18.7
Q ss_pred ccCcchhHHHHHHHHHHHHHHHHHH
Q 029466 14 SKGFKVKHFLQICLLLAICFWLLHQ 38 (193)
Q Consensus 14 sKG~kvKh~LQI~lLl~VciWLlYQ 38 (193)
++.+.+=-++-++++++++.|+.|+
T Consensus 3 rr~~~~~~~v~~vv~~~~~~w~~~~ 27 (112)
T PF14155_consen 3 RRKLVIAGAVLVVVAGAVVAWFGYS 27 (112)
T ss_pred cceeEehHHHHHHHHHHHHhHhhhh
Confidence 3455666677777888888999888
No 22
>PF06716 DUF1201: Protein of unknown function (DUF1201); InterPro: IPR009591 This entry consists of several Beet yellows virus (BYV) putative membrane-binding proteins of around 54 residues in length. The function of this currently unknown.
Probab=52.97 E-value=15 Score=26.09 Aligned_cols=17 Identities=29% Similarity=0.733 Sum_probs=11.3
Q ss_pred HHHHHHHHHH---HHHHHHH
Q 029466 21 HFLQICLLLA---ICFWLLH 37 (193)
Q Consensus 21 h~LQI~lLl~---VciWLlY 37 (193)
-+|-||+.|+ |.||.+|
T Consensus 13 F~~lIC~Fl~~~~~F~~F~~ 32 (54)
T PF06716_consen 13 FGFLICLFLFCLVVFIWFVY 32 (54)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 3566777654 5678877
No 23
>COG3610 Uncharacterized conserved protein [Function unknown]
Probab=51.87 E-value=17 Score=30.24 Aligned_cols=22 Identities=23% Similarity=0.365 Sum_probs=19.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHhh
Q 029466 20 KHFLQICLLLAICFWLLHQVRK 41 (193)
Q Consensus 20 Kh~LQI~lLl~VciWLlYQvkh 41 (193)
+..|-+|.++|-|-|++|++--
T Consensus 28 ~~~l~~~~~~g~~g~~v~~l~~ 49 (156)
T COG3610 28 PRALPICGFLGALGWVVYYLLG 49 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5678999999999999999854
No 24
>PF03911 Sec61_beta: Sec61beta family; InterPro: IPR005609 This family consists of Sec61 subunit beta and homologues like archaeal SecG. This subunit is a component of the Sec61/SecYEG protein secretory system.; PDB: 2WWA_C 2WW9_C 3BO0_C 3KCR_C 3BO1_C 2YXR_C 3DKN_C 2YXQ_C 1RH5_C 1RHZ_C ....
Probab=51.75 E-value=16 Score=24.15 Aligned_cols=21 Identities=29% Similarity=0.352 Sum_probs=18.0
Q ss_pred cchhHHHHHHHHHHHHHHHHH
Q 029466 17 FKVKHFLQICLLLAICFWLLH 37 (193)
Q Consensus 17 ~kvKh~LQI~lLl~VciWLlY 37 (193)
+.+|++|-+++.+++++|+|.
T Consensus 18 i~P~~Vl~~si~fi~~V~~Lh 38 (41)
T PF03911_consen 18 IDPKTVLIISIAFIAIVILLH 38 (41)
T ss_dssp BSCCHHHHHHHHHHHHHHHHT
T ss_pred eCCeehHHHHHHHHHHHHHHh
Confidence 345899999999999999985
No 25
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=50.45 E-value=13 Score=28.92 Aligned_cols=26 Identities=19% Similarity=0.324 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhh
Q 029466 22 FLQICLLLAICFWLLHQVRKSYDRKK 47 (193)
Q Consensus 22 ~LQI~lLl~VciWLlYQvkhS~dkk~ 47 (193)
+|-++|+++++||||.=+-|+..+++
T Consensus 3 ~l~~iii~~i~l~~~~~~~~~rRR~r 28 (130)
T PF12273_consen 3 VLFAIIIVAILLFLFLFYCHNRRRRR 28 (130)
T ss_pred eeHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44455555555555555555444433
No 26
>COG3087 FtsN Cell division protein [Cell division and chromosome partitioning]
Probab=49.52 E-value=23 Score=32.28 Aligned_cols=34 Identities=18% Similarity=0.190 Sum_probs=16.1
Q ss_pred ccccCCCccccccCcchhHHHH--HHHHHHHHHHHHHH
Q 029466 3 ILKQSSSKNLRSKGFKVKHFLQ--ICLLLAICFWLLHQ 38 (193)
Q Consensus 3 MlrqsssRnqRsKG~kvKh~LQ--I~lLl~VciWLlYQ 38 (193)
|.|.+.|| |+++..-..++- +.+||++++.|+++
T Consensus 1 m~~~~~s~--r~~~~~~~~~~~i~~~viv~~~~~~~~~ 36 (264)
T COG3087 1 MRKNSTSR--RARPQVGPTFVAIAAAVIVTFIGGLYFI 36 (264)
T ss_pred CcccccCc--cccchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 55556666 555554444433 33444444444443
No 27
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=49.27 E-value=25 Score=28.13 Aligned_cols=32 Identities=13% Similarity=0.190 Sum_probs=23.7
Q ss_pred chhHHHHHHHHHHHHHHHHHH-Hhhhhhhhhhc
Q 029466 18 KVKHFLQICLLLAICFWLLHQ-VRKSYDRKKAY 49 (193)
Q Consensus 18 kvKh~LQI~lLl~VciWLlYQ-vkhS~dkk~~y 49 (193)
-+-+++..++|++|+.|++|. |..-.+++..+
T Consensus 11 ~~~~~inflil~~lL~~fl~kpi~~~l~~R~~~ 43 (164)
T PRK14473 11 LIAQLINFLLLIFLLRTFLYRPVLNLLNERTRR 43 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355778888899999999998 55566666544
No 28
>PRK10234 DNA-binding transcriptional activator GutM; Provisional
Probab=48.90 E-value=16 Score=29.32 Aligned_cols=17 Identities=18% Similarity=0.434 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHH------HHHhh
Q 029466 25 ICLLLAICFWLL------HQVRK 41 (193)
Q Consensus 25 I~lLl~VciWLl------YQvkh 41 (193)
+.+++||++||| +|+||
T Consensus 4 ~LIi~~~~a~llQ~~lg~~Qik~ 26 (118)
T PRK10234 4 ALITVAVIAWCAQLALGGWQISR 26 (118)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888885 89988
No 29
>PRK10893 lipopolysaccharide exporter periplasmic protein; Provisional
Probab=48.87 E-value=17 Score=30.63 Aligned_cols=25 Identities=16% Similarity=0.211 Sum_probs=20.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhh
Q 029466 18 KVKHFLQICLLLAICFWLLHQVRKS 42 (193)
Q Consensus 18 kvKh~LQI~lLl~VciWLlYQvkhS 42 (193)
|.+..|-++|.|++|+|+.|.+-.+
T Consensus 3 ~~~~~~~~il~~~~l~l~~W~l~~~ 27 (192)
T PRK10893 3 KTRRWVIILLALIALVLIGWNLADK 27 (192)
T ss_pred hhHHHHHHHHHHHHHHHHHhhccCC
Confidence 5677888888899999999877653
No 30
>PF11780 DUF3318: Protein of unknown function (DUF3318); InterPro: IPR021751 This is a bacterial family of uncharacterised proteins.
Probab=46.95 E-value=19 Score=29.67 Aligned_cols=26 Identities=12% Similarity=0.119 Sum_probs=21.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhhh
Q 029466 18 KVKHFLQICLLLAICFWLLHQVRKSY 43 (193)
Q Consensus 18 kvKh~LQI~lLl~VciWLlYQvkhS~ 43 (193)
-.+.+|.+.|.+|.|.|-+||+=++.
T Consensus 99 ~~~d~lk~~la~Gla~~~~~riwq~~ 124 (146)
T PF11780_consen 99 WQQDALKWGLAGGLAAWAAYRIWQQN 124 (146)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHc
Confidence 35678899999999999999998743
No 31
>PF13268 DUF4059: Protein of unknown function (DUF4059)
Probab=46.95 E-value=19 Score=27.16 Aligned_cols=22 Identities=27% Similarity=0.567 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhhh
Q 029466 25 ICLLLAICFWLLHQVRKSYDRK 46 (193)
Q Consensus 25 I~lLl~VciWLlYQvkhS~dkk 46 (193)
+++++..++|.+|......||-
T Consensus 18 i~V~~~~~~wi~~Ra~~~~DKT 39 (72)
T PF13268_consen 18 ILVLLVSGIWILWRALRKKDKT 39 (72)
T ss_pred HHHHHHHHHHHHHHHHHcCCCc
Confidence 4456667899999999877774
No 32
>PRK10807 paraquat-inducible protein B; Provisional
Probab=46.94 E-value=17 Score=35.29 Aligned_cols=20 Identities=15% Similarity=0.137 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHhhhhhh
Q 029466 26 CLLLAICFWLLHQVRKSYDR 45 (193)
Q Consensus 26 ~lLl~VciWLlYQvkhS~dk 45 (193)
++.|+||+||+||--.+..-
T Consensus 25 ~~a~~i~~~l~~~~~~~~G~ 44 (547)
T PRK10807 25 IVTALIGAWILFYHFSHQGP 44 (547)
T ss_pred HHHHHHHHHHHHHHHHcCCe
Confidence 45567889999997665443
No 33
>PF11755 DUF3311: Protein of unknown function (DUF3311); InterPro: IPR021741 This is a family of short bacterial proteins of unknwon function.
Probab=46.82 E-value=21 Score=25.57 Aligned_cols=25 Identities=16% Similarity=0.457 Sum_probs=18.1
Q ss_pred CcchhHHHHH--HHHHHHHHHHHHHHh
Q 029466 16 GFKVKHFLQI--CLLLAICFWLLHQVR 40 (193)
Q Consensus 16 G~kvKh~LQI--~lLl~VciWLlYQvk 40 (193)
|+-.=...|+ ++|.++|+|++|.+.
T Consensus 27 G~Pff~~w~~~wv~lts~~~~~~y~l~ 53 (66)
T PF11755_consen 27 GMPFFYWWQLAWVVLTSVCMAIVYRLD 53 (66)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5555555554 467789999999993
No 34
>PF10675 DUF2489: Protein of unknown function (DUF2489); InterPro: IPR019617 This entry represents bacterial uncharacterised proteins.
Probab=45.83 E-value=15 Score=29.61 Aligned_cols=19 Identities=26% Similarity=0.321 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHhhhh
Q 029466 25 ICLLLAICFWLLHQVRKSY 43 (193)
Q Consensus 25 I~lLl~VciWLlYQvkhS~ 43 (193)
|+.|.+.++||+++|++-.
T Consensus 1 I~~La~YA~~Ll~~l~~q~ 19 (131)
T PF10675_consen 1 IVALAGYAGYLLLKLKKQK 19 (131)
T ss_pred ChHHHHHHHHHHHHHHHHH
Confidence 5789999999999999854
No 35
>PF10624 TraS: Plasmid conjugative transfer entry exclusion protein TraS; InterPro: IPR018898 Entry exclusion (Eex) is a process which prevents redundant transfer of DNA between donor cells. TraS is a protein involved in Eex. It blocks redundant conjugative DNA synthesis and transport between donor cells, and it is suggested that TraS interferes with a signalling pathway that is required to trigger DNA transfer []. TraS on the recipient cell is known to form an interaction with TraG on the donor cell [].
Probab=45.74 E-value=24 Score=30.03 Aligned_cols=19 Identities=37% Similarity=0.721 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 029466 22 FLQICLLLAICFWLLHQVR 40 (193)
Q Consensus 22 ~LQI~lLl~VciWLlYQvk 40 (193)
+|-|+|-+|+.|||.-||+
T Consensus 32 l~f~~lWqglFiwlF~qIr 50 (164)
T PF10624_consen 32 LLFIVLWQGLFIWLFIQIR 50 (164)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4556677788999999994
No 36
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=45.26 E-value=38 Score=26.01 Aligned_cols=22 Identities=36% Similarity=0.465 Sum_probs=14.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHhh
Q 029466 20 KHFLQICLLLAICFWLLHQVRK 41 (193)
Q Consensus 20 Kh~LQI~lLl~VciWLlYQvkh 41 (193)
|.+|-|+|||||.+-+.-.|..
T Consensus 4 K~~llL~l~LA~lLlisSevaa 25 (95)
T PF07172_consen 4 KAFLLLGLLLAALLLISSEVAA 25 (95)
T ss_pred hHHHHHHHHHHHHHHHHhhhhh
Confidence 5567777777777666666655
No 37
>PF06682 DUF1183: Protein of unknown function (DUF1183); InterPro: IPR009567 This family consists of several eukaryotic proteins of around 360 residues in length. The function of this family is unknown.
Probab=45.00 E-value=17 Score=33.59 Aligned_cols=23 Identities=13% Similarity=0.184 Sum_probs=18.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhh
Q 029466 20 KHFLQICLLLAICFWLLHQVRKS 42 (193)
Q Consensus 20 Kh~LQI~lLl~VciWLlYQvkhS 42 (193)
--.|-++++|+|++|+||-+=.+
T Consensus 156 ~~~lf~ii~l~vla~ivY~~~~~ 178 (318)
T PF06682_consen 156 GSWLFWIIFLLVLAFIVYSLFLS 178 (318)
T ss_pred cchhhhHHHHHHHHHHHHHHHhc
Confidence 45777888999999999976553
No 38
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=44.89 E-value=21 Score=28.89 Aligned_cols=20 Identities=0% Similarity=0.431 Sum_probs=15.7
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 029466 20 KHFLQICLLLAICFWLLHQV 39 (193)
Q Consensus 20 Kh~LQI~lLl~VciWLlYQv 39 (193)
-+++.+++|++|..|++|.-
T Consensus 24 ~~iinflIl~~lL~~fl~kp 43 (174)
T PRK07352 24 TNLINLAIVIGLLYYFGRGF 43 (174)
T ss_pred HHHHHHHHHHHHHHHHhHHH
Confidence 46777888888888888874
No 39
>PF14316 DUF4381: Domain of unknown function (DUF4381)
Probab=44.81 E-value=26 Score=27.72 Aligned_cols=17 Identities=29% Similarity=0.536 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHhh
Q 029466 25 ICLLLAICFWLLHQVRK 41 (193)
Q Consensus 25 I~lLl~VciWLlYQvkh 41 (193)
+++||++++|++|-.-+
T Consensus 27 ~~lll~~~~~~~~~~~r 43 (146)
T PF14316_consen 27 LALLLLLLILLLWRLWR 43 (146)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44445555555555444
No 40
>PF02936 COX4: Cytochrome c oxidase subunit IV; InterPro: IPR004203 Cytochrome c oxidase, a 13 sub-unit complex (1.9.3.1 from EC) is the terminal oxidase in the mitochondrial electron transport chain. This family is composed of cytochrome c oxidase subunit IV. The Dictyostelium discoideum (Slime mould) member of this family is called COX VI. The Saccharomyces cerevisiae protein YGX6_YEAST appears to be the yeast COX IV subunit.; GO: 0004129 cytochrome-c oxidase activity; PDB: 3ABK_Q 3AG1_Q 3ASN_Q 1OCZ_D 2EIN_Q 2OCC_D 2YBB_O 3AG3_D 1OCO_Q 1V55_Q ....
Probab=42.61 E-value=18 Score=29.50 Aligned_cols=38 Identities=16% Similarity=0.176 Sum_probs=27.3
Q ss_pred cccCCCccccccCcchhHHHHHHHHHHHHHHHHHHHhh
Q 029466 4 LKQSSSKNLRSKGFKVKHFLQICLLLAICFWLLHQVRK 41 (193)
Q Consensus 4 lrqsssRnqRsKG~kvKh~LQI~lLl~VciWLlYQvkh 41 (193)
|.++..|-+++.|--.+-+.-++++|++++||++=+++
T Consensus 60 Fg~~g~r~~~~~gewk~v~~~~~~~i~~s~~l~~~~r~ 97 (142)
T PF02936_consen 60 FGQTGPRMKAPTGEWKKVFGGVFIFIGFSVLLFIWQRS 97 (142)
T ss_dssp -SS-HHHHT---SHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCcccccccCCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777778888888888889999999999988876
No 41
>PF04148 Erv26: Transmembrane adaptor Erv26; InterPro: IPR007277 Erv26 is an integral membrane protein that is packed into COPII vesicles and cycles between the ER and Golgi compartments. It directs pro-alkaline phosphatase into endoplasmic reticulum-derived COPII transport vesicles [].
Probab=42.25 E-value=22 Score=31.24 Aligned_cols=19 Identities=26% Similarity=0.854 Sum_probs=16.7
Q ss_pred chhHHHHHHHHHHHHHHHH
Q 029466 18 KVKHFLQICLLLAICFWLL 36 (193)
Q Consensus 18 kvKh~LQI~lLl~VciWLl 36 (193)
+.-.+.+|+...++|+||+
T Consensus 134 ~~~sf~eI~sfF~lcVWlV 152 (211)
T PF04148_consen 134 RYPSFSEIASFFGLCVWLV 152 (211)
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 3667899999999999997
No 42
>COG1426 Predicted transcriptional regulator contains Xre-like HTH domain [Function unknown]
Probab=41.63 E-value=25 Score=31.40 Aligned_cols=23 Identities=26% Similarity=0.354 Sum_probs=15.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHh
Q 029466 18 KVKHFLQICLLLAICFWLLHQVR 40 (193)
Q Consensus 18 kvKh~LQI~lLl~VciWLlYQvk 40 (193)
..-.++-|.+++||.+|.+||..
T Consensus 106 ~~~~~~~i~~~~~~~~~~~~~~~ 128 (284)
T COG1426 106 TLLLLLVILGLLGLLWWQAIQAW 128 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Confidence 33344455667788888888776
No 43
>PRK14003 potassium-transporting ATPase subunit C; Provisional
Probab=40.91 E-value=30 Score=30.14 Aligned_cols=23 Identities=13% Similarity=0.015 Sum_probs=16.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhh
Q 029466 19 VKHFLQICLLLAICFWLLHQVRK 41 (193)
Q Consensus 19 vKh~LQI~lLl~VciWLlYQvkh 41 (193)
++.+|.++|++.|++-++|-+--
T Consensus 7 l~~al~~~l~~~vl~G~~YPl~v 29 (194)
T PRK14003 7 AIRAIRSTLVLWLLTALIYPFLM 29 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777777777777776554
No 44
>PF01708 Gemini_mov: Geminivirus putative movement protein ; InterPro: IPR002621 This family consists of putative movement proteins from Maize streak virus and Wheat dwarf virus [].; GO: 0046740 spread of virus in host, cell to cell, 0016021 integral to membrane
Probab=40.89 E-value=12 Score=29.30 Aligned_cols=22 Identities=18% Similarity=0.276 Sum_probs=15.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHH
Q 029466 18 KVKHFLQICLLLAICFWLLHQV 39 (193)
Q Consensus 18 kvKh~LQI~lLl~VciWLlYQv 39 (193)
+|--++-++|+-..||||+|-+
T Consensus 36 ~vv~v~i~~lvaVg~~YL~y~~ 57 (91)
T PF01708_consen 36 RVVEVAIFTLVAVGCLYLAYTW 57 (91)
T ss_pred eEeeeeehHHHHHHHHHHHHHH
Confidence 4444555666666789999975
No 45
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=40.69 E-value=9.2 Score=32.83 Aligned_cols=15 Identities=33% Similarity=0.381 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHH
Q 029466 25 ICLLLAICFWLLHQV 39 (193)
Q Consensus 25 I~lLl~VciWLlYQv 39 (193)
++||++|++|||||-
T Consensus 39 yil~~~I~ly~l~qk 53 (190)
T PF06936_consen 39 YILFGCILLYLLWQK 53 (190)
T ss_dssp ---------------
T ss_pred HHHHHHHHHHHHHHH
Confidence 457888888999985
No 46
>TIGR03063 srtB_target sortase B cell surface sorting signal. Two different classes of sorting signal, both analogous to the sortase A signal LPXTG, may be recognized by the sortase SrtB. These are given as NXZTN and NPKXZ. Proteins sorted by this class of sortase are less common than the sortase A and LPXTG system. This model describes a number of cell surface protein C-terminal regions from Gram-positive bacteria that appear to be sortase B (SrtB) sorting signals.
Probab=39.96 E-value=30 Score=21.92 Aligned_cols=18 Identities=22% Similarity=0.288 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 029466 22 FLQICLLLAICFWLLHQV 39 (193)
Q Consensus 22 ~LQI~lLl~VciWLlYQv 39 (193)
+|-++||+|-++|||+-+
T Consensus 11 ~ly~~l~~~s~~~Li~k~ 28 (29)
T TIGR03063 11 GLYAVLFLGSGLFLIRKR 28 (29)
T ss_pred HHHHHHHHHHHHHHhhcc
Confidence 677778888779998643
No 47
>KOG3269 consensus Predicted membrane protein [Function unknown]
Probab=39.78 E-value=30 Score=30.01 Aligned_cols=22 Identities=18% Similarity=0.404 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh
Q 029466 22 FLQICLLLAICFWLLHQVRKSY 43 (193)
Q Consensus 22 ~LQI~lLl~VciWLlYQvkhS~ 43 (193)
++||..++.+|+|++|.+---+
T Consensus 111 ~v~llsiis~kfw~~lLl~P~~ 132 (180)
T KOG3269|consen 111 FVQLLSIISGKFWASLLLIPIF 132 (180)
T ss_pred HHHHHHHHHHHHHHHHHHhhHH
Confidence 3566677889999999987643
No 48
>cd00927 Cyt_c_Oxidase_VIc Cytochrome c oxidase subunit VIc. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. The VIc subunit is found only in eukaryotes and its specific function remains unclear. It has been reported that the relative concentrations of some nuclear encoded CcO subunits, including subunit VIc, compared to those of the mitochondrial encoded subunits, are altered significantly during the progression of prostate cancer.
Probab=39.29 E-value=47 Score=24.80 Aligned_cols=34 Identities=24% Similarity=0.331 Sum_probs=25.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhhhhhhhhccc
Q 029466 18 KVKHFLQICLLLAICFWLLHQVRKSYDRKKAYEE 51 (193)
Q Consensus 18 kvKh~LQI~lLl~VciWLlYQvkhS~dkk~~y~~ 51 (193)
++|.-|-+++.|++++=++|-+-+.--+|++|.+
T Consensus 14 ~l~~~l~~a~~lsl~~~~~~k~~~~~pRK~aYad 47 (70)
T cd00927 14 RIKRHLIVAFVLSLGAAAAYKFLVNEPRKKAYAD 47 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 4555677777888888888888888778887754
No 49
>PRK09731 putative general secretion pathway protein YghD; Provisional
Probab=39.16 E-value=29 Score=29.55 Aligned_cols=21 Identities=14% Similarity=0.029 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 029466 21 HFLQICLLLAICFWLLHQVRK 41 (193)
Q Consensus 21 h~LQI~lLl~VciWLlYQvkh 41 (193)
-++=+||+|++|-|+|.|=-.
T Consensus 41 ~~~g~vL~l~i~Y~~iWqPl~ 61 (178)
T PRK09731 41 LAAVVFLFSVGYYVLIWQPLS 61 (178)
T ss_pred HHHHHHHHHHHHHHHHHhHHH
Confidence 456678999999999998443
No 50
>PF07226 DUF1422: Protein of unknown function (DUF1422); InterPro: IPR009867 This family consists of several hypothetical bacterial proteins of around 120 residues in length. The function of this family is unknown.
Probab=39.10 E-value=34 Score=27.89 Aligned_cols=21 Identities=24% Similarity=0.509 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 029466 21 HFLQICLLLAICFWLLHQVRK 41 (193)
Q Consensus 21 h~LQI~lLl~VciWLlYQvkh 41 (193)
.+|-+++.|+.++|+.|.++.
T Consensus 93 NFfp~il~l~L~~Wi~~kl~~ 113 (117)
T PF07226_consen 93 NFFPSILCLILVFWIGYKLGF 113 (117)
T ss_pred hHHHHHHHHHHHHHHHHHHhh
Confidence 367889999999999999986
No 51
>PLN03221 rapid alkalinization factor 23; Provisional
Probab=39.06 E-value=32 Score=28.72 Aligned_cols=27 Identities=26% Similarity=0.509 Sum_probs=19.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhhhh
Q 029466 18 KVKHFLQICLLLAICFWLLHQVRKSYD 44 (193)
Q Consensus 18 kvKh~LQI~lLl~VciWLlYQvkhS~d 44 (193)
-.-.+|-|.|+|+|-||.+---..|-+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 35 (137)
T PLN03221 9 GAAAIFAILLILAVHFWSVAVSSQSIE 35 (137)
T ss_pred cHHHHHHHHHHHHHHHHhheeeccccc
Confidence 345688999999999998865444433
No 52
>PF07330 DUF1467: Protein of unknown function (DUF1467); InterPro: IPR009935 This family consists of several bacterial proteins of around 90 residues in length. The function of this family is unknown.
Probab=38.45 E-value=43 Score=25.51 Aligned_cols=26 Identities=12% Similarity=0.124 Sum_probs=21.2
Q ss_pred cCcchhHHHHHHHHHHHHHHHHHHHh
Q 029466 15 KGFKVKHFLQICLLLAICFWLLHQVR 40 (193)
Q Consensus 15 KG~kvKh~LQI~lLl~VciWLlYQvk 40 (193)
..++++..+-++++++..+|.+|=+-
T Consensus 45 ~~~~l~rk~~~TTiiaavi~~~~~~~ 70 (85)
T PF07330_consen 45 ANPRLKRKALITTIIAAVIFAIIYLI 70 (85)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788888899999999999877543
No 53
>PF00672 HAMP: HAMP domain; InterPro: IPR003660 The HAMP linker domain (present in Histidine kinases, Adenyl cyclases, Methyl-accepting proteins and Phosphatases) is an approximately 50-amino acid alpha-helical region. It is found in bacterial sensor and chemotaxis proteins and in eukaryotic histidine kinases. The bacterial proteins are usually integral membrane proteins and part of a two-component signal transduction pathway. One or several copies of the HAMP domain can be found in association with other domains, such as the histidine kinase domain, the bacterial chemotaxis sensory transducer domain, the PAS repeat, the EAL domain, the GGDEF domain, the protein phosphatase 2C-like domain, the guanylate cyclase domain, or the response regulatory domain. It has been suggested that the HAMP domain possesses a role of regulating the phosphorylation or methylation of homodimeric receptors by transmitting the conformational changes in periplasmic ligand-binding domains to cytoplasmic signalling kinase and methyl-acceptor domains.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016021 integral to membrane; PDB: 3PJX_A 3PJW_A 3ZX6_B 2Y20_B 2Y0Q_D 2Y21_H 3ZRW_C 2L7H_B 2LFS_B 2L7I_B ....
Probab=38.45 E-value=44 Score=21.99 Aligned_cols=21 Identities=10% Similarity=0.251 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhh
Q 029466 23 LQICLLLAICFWLLHQVRKSY 43 (193)
Q Consensus 23 LQI~lLl~VciWLlYQvkhS~ 43 (193)
+-+++++++|+|+.|-+.++-
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~i 23 (70)
T PF00672_consen 3 VLFLIILLLSLLLAWLLARRI 23 (70)
T ss_dssp HHHHHHHHHHHHHHHH--HTT
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445667777777777777753
No 54
>PF02104 SURF1: SURF1 family; InterPro: IPR002994 The surfeit locus 1 gene (SURF1 or surf-1) encodes a conserved protein of about 300 amino-acid residues that seems to be involved in the biogenesis of cytochrome c oxidase []. Vertebrate SURF1 is evolutionary related to yeast protein SHY1. There seems to be two transmembrane regions in these proteins, one in the N-terminal, the other in the C-terminal. Rickettsia prowazekii protein RP733 is also a member of this protein family.; GO: 0016020 membrane
Probab=37.43 E-value=24 Score=29.06 Aligned_cols=23 Identities=17% Similarity=0.187 Sum_probs=16.3
Q ss_pred HHHHHHHHHH-HHHHhhhhhhhhh
Q 029466 26 CLLLAICFWL-LHQVRKSYDRKKA 48 (193)
Q Consensus 26 ~lLl~VciWL-lYQvkhS~dkk~~ 48 (193)
+++++||+|| ++|+.+.+.|+.-
T Consensus 2 l~~~~~~~~LG~WQl~R~~~K~~l 25 (212)
T PF02104_consen 2 LLAIALLVGLGFWQLDRAQWKQAL 25 (212)
T ss_pred ChHHHHHHHHCHHHhCHHHHHHHH
Confidence 4566777776 6699988887653
No 55
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=36.84 E-value=47 Score=28.19 Aligned_cols=31 Identities=16% Similarity=0.520 Sum_probs=22.8
Q ss_pred hhHHHHHHHHHHHHHHHHHH-Hhhhhhhhhhc
Q 029466 19 VKHFLQICLLLAICFWLLHQ-VRKSYDRKKAY 49 (193)
Q Consensus 19 vKh~LQI~lLl~VciWLlYQ-vkhS~dkk~~y 49 (193)
+=+++-.++|++++.|++|. |+.-.+.|+.+
T Consensus 52 i~qlInFlIlv~lL~k~l~kPi~~~L~~R~~~ 83 (205)
T PRK06231 52 IAHLIAFSILLLLGIFLFWKPTQRFLNKRKEL 83 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667778889999999998 66666666543
No 56
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=36.51 E-value=15 Score=34.15 Aligned_cols=56 Identities=18% Similarity=0.379 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhcccCCccccccccccccccccccCCCCcccccc
Q 029466 21 HFLQICLLLAICFWLLHQVRKSYDRKKAYEEGTATQSEVKSEHEGIKLGRKDVRLPVQQVT 81 (193)
Q Consensus 21 h~LQI~lLl~VciWLlYQvkhS~dkk~~y~~~~~~~s~~~~~~~~~kLGRKdl~p~~~e~~ 81 (193)
..=|.+.+..+|.|||=+..+.+..-..|.+ ++.+...--....++| ++|...+..
T Consensus 38 p~eQF~~F~~L~~WL~~~~g~~f~~p~e~DD--Pn~~~~~Il~~lr~~g---~~~df~p~k 93 (359)
T PF10498_consen 38 PGEQFYYFTSLCAWLISKAGRKFEQPQEYDD--PNATISNILDELRKLG---VPVDFPPSK 93 (359)
T ss_pred chHHHHHHHHHHHHHHHhcCCCCCCCcccCC--HHHHHHHHHHHHHccC---CCCCCChHH
Confidence 3458899999999999999988887667763 3322222334556666 444444433
No 57
>PRK14794 lipoprotein signal peptidase; Provisional
Probab=36.50 E-value=35 Score=27.62 Aligned_cols=22 Identities=9% Similarity=0.276 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 029466 21 HFLQICLLLAICFWLLHQVRKS 42 (193)
Q Consensus 21 h~LQI~lLl~VciWLlYQvkhS 42 (193)
.+-=+|+.+|||++++|.+...
T Consensus 103 NvAD~~I~iGv~lll~~~~~~~ 124 (136)
T PRK14794 103 NLADIAIVLGALLFVSSSLLGK 124 (136)
T ss_pred eHHHHHHHHHHHHHHHHHHhcc
Confidence 3456899999999999998653
No 58
>PRK11056 hypothetical protein; Provisional
Probab=36.43 E-value=39 Score=27.66 Aligned_cols=21 Identities=24% Similarity=0.697 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 029466 21 HFLQICLLLAICFWLLHQVRK 41 (193)
Q Consensus 21 h~LQI~lLl~VciWLlYQvkh 41 (193)
.+|-+++.++.++|+.|.++.
T Consensus 93 NF~p~il~~~L~~Wi~~kl~~ 113 (120)
T PRK11056 93 NFFPAVLSVILVFWIGRKLRN 113 (120)
T ss_pred chHHHHHHHHHHHHHHHHHhc
Confidence 367889999999999999987
No 59
>PF03896 TRAP_alpha: Translocon-associated protein (TRAP), alpha subunit; InterPro: IPR005595 The alpha-subunit of the TRAP complex (TRAP alpha) is a single-spanning membrane protein of the endoplasmic reticulum (ER) which is found in proximity of nascent polypeptide chains translocating across the membrane [].; GO: 0005783 endoplasmic reticulum
Probab=36.38 E-value=39 Score=30.68 Aligned_cols=32 Identities=22% Similarity=0.392 Sum_probs=21.5
Q ss_pred CcchhHHHHHHHHHHHH---HHHHHHHhhhhhhhh
Q 029466 16 GFKVKHFLQICLLLAIC---FWLLHQVRKSYDRKK 47 (193)
Q Consensus 16 G~kvKh~LQI~lLl~Vc---iWLlYQvkhS~dkk~ 47 (193)
||....+|-+++|+|++ +|.+||+--+.-||+
T Consensus 202 ~~D~e~iFLY~~l~a~~~l~l~~~~~~l~~~~kkr 236 (285)
T PF03896_consen 202 GFDPETIFLYLFLAALGVLGLYFVYQFLPSSKKKR 236 (285)
T ss_pred CcChhhhhHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 56677777776666554 588888876665544
No 60
>PF00287 Na_K-ATPase: Sodium / potassium ATPase beta chain; InterPro: IPR000402 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the beta subunit found in the P-type cation exchange ATPases located in the plasma membranes of animal cells. These P-ATPases include both H+/K+-ATPases (3.6.3.10 from EC) and Na+/K+-ATPases (3.6.3.9 from EC), which belong to the IIC subfamily of ATPases [, ]. These ATPases catalyse the hydrolysis of ATP coupled with the exchange of cations, pumping one cation out of the cell (H+ or Na+) in exchange for K+. These ATPases contain an alpha subunit (IPR005775 from INTERPRO) that is the catalytic component, and a glycosylated beta subunit that regulates the number of sodium pumps transported to the plasma membrane through the assembly of alpha/beta heterodimers. The beta subunit has three highly conserved disulphide bonds within the extracellular domain that stabilise the alpha subunit, the alpha/beta interaction, and the catalytic activity of the alpha subunit []. Different beta isoforms exist, permitting greater regulatory control. An example of a H+/K+-ATPase is the gastric pump responsible for acid secretion in the stomach, transporting protons from the cytoplasm of parietal cells to create a large pH gradient in exchange for the internalisation of potassium ions, using ATP hydrolysis to drive the pump []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0005391 sodium:potassium-exchanging ATPase activity, 0006754 ATP biosynthetic process, 0006813 potassium ion transport, 0006814 sodium ion transport, 0016020 membrane; PDB: 2XZB_B 3A3Y_B 3N2F_D 3B8E_D 3KDP_D 3N23_D.
Probab=35.92 E-value=29 Score=31.19 Aligned_cols=15 Identities=40% Similarity=1.030 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHH
Q 029466 25 ICLLLAICFWLLHQV 39 (193)
Q Consensus 25 I~lLl~VciWLlYQv 39 (193)
|+.|.++|+|.+||.
T Consensus 51 La~lfa~~m~v~l~t 65 (289)
T PF00287_consen 51 LAALFAICMWVFLQT 65 (289)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHH
Confidence 345678999999984
No 61
>PF05493 ATP_synt_H: ATP synthase subunit H ; InterPro: IPR008389 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit E (or subunit M9.2) found in the V0 complex of certain V-ATPases. The V0 complex contains subunit C (proton-conducting pore), as well as accessory subunits that function in assembly, targeting or regulation of the V-ATPase complex. Subunit E is an extremely hydrophobic protein of approximately 9 kDa, which may be required for assembly of vacuolar ATPases []. The amino terminal domain of subunit E interacts with the H subunit and is required fo V-ATPase function []. Different isoforms of this subunit exist sometimes annotated as E1 and E2 also a neuron-specific isoform, NM9.2 has been identified []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033179 proton-transporting V-type ATPase, V0 domain
Probab=35.87 E-value=32 Score=24.82 Aligned_cols=19 Identities=26% Similarity=0.815 Sum_probs=12.9
Q ss_pred HHHHHHH-HHHHHHHHHHHh
Q 029466 22 FLQICLL-LAICFWLLHQVR 40 (193)
Q Consensus 22 ~LQI~lL-l~VciWLlYQvk 40 (193)
++|++++ .+||.||+.-+-
T Consensus 29 li~~~~ilt~~CcwL~W~~~ 48 (65)
T PF05493_consen 29 LIRTSLILTAVCCWLFWACT 48 (65)
T ss_pred eEhHHHHHHHHHHHHHHHHH
Confidence 4455544 589999987654
No 62
>PF11286 DUF3087: Protein of unknown function (DUF3087); InterPro: IPR021438 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=35.24 E-value=38 Score=28.90 Aligned_cols=20 Identities=30% Similarity=0.355 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 029466 22 FLQICLLLAICFWLLHQVRK 41 (193)
Q Consensus 22 ~LQI~lLl~VciWLlYQvkh 41 (193)
+|=+++-+++|+|+++|+|+
T Consensus 53 llGVil~~~~~~~~l~~~k~ 72 (165)
T PF11286_consen 53 LLGVILGLLLTSALLRQLKT 72 (165)
T ss_pred HHHHHHHHHHHHHHHHHHcc
Confidence 56678888899999876654
No 63
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=35.11 E-value=39 Score=26.88 Aligned_cols=29 Identities=14% Similarity=0.346 Sum_probs=19.2
Q ss_pred hHHHHHHHHHHHHHHHHHH-Hhhhhhhhhh
Q 029466 20 KHFLQICLLLAICFWLLHQ-VRKSYDRKKA 48 (193)
Q Consensus 20 Kh~LQI~lLl~VciWLlYQ-vkhS~dkk~~ 48 (193)
-+++..++|++|+.|++|- |....++++.
T Consensus 10 ~~~inF~il~~iL~~f~~kpi~~~l~~R~~ 39 (159)
T PRK13461 10 ATIINFIILLLILKHFFFDKIKAVIDSRQS 39 (159)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4567777888888888886 4444555544
No 64
>PF13544 N_methyl_2: Type IV pilin N-term methylation site GFxxxE; PDB: 3SOK_A 2HIL_L 1AY2_A 2PIL_A 2HI2_A 1OQW_A.
Probab=34.96 E-value=41 Score=20.86 Aligned_cols=25 Identities=28% Similarity=0.486 Sum_probs=7.8
Q ss_pred CCCccccccCcchhHHHHHHHHHHH
Q 029466 7 SSSKNLRSKGFKVKHFLQICLLLAI 31 (193)
Q Consensus 7 sssRnqRsKG~kvKh~LQI~lLl~V 31 (193)
.+++..|.+||-+=-+|=.+++++|
T Consensus 6 ~~~~~~~~~GFTLiEllVa~~I~~i 30 (31)
T PF13544_consen 6 RRRRRRRQRGFTLIELLVAMAILAI 30 (31)
T ss_dssp ------------HHHHHHHHHHHHH
T ss_pred ccccccccCCccHHHHHHHHHHHHH
Confidence 3445556679987666655555554
No 65
>TIGR02588 conserved hypothetical protein TIGR02588. The function of this protein is unknown. It is always found as part of a two-gene operon with TIGR02587, a protein that appears to span the membrane seven times. It is found in Nostoc sp. PCC 7120, Agrobacterium tumefaciens, Sinorhizobium meliloti, and Gloeobacter violaceus, so far, all of which are bacterial.
Probab=34.79 E-value=40 Score=27.53 Aligned_cols=27 Identities=7% Similarity=-0.030 Sum_probs=21.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 029466 20 KHFLQICLLLAICFWLLHQVRKSYDRK 46 (193)
Q Consensus 20 Kh~LQI~lLl~VciWLlYQvkhS~dkk 46 (193)
--++-++||++|.-|++|+--...++.
T Consensus 7 t~~Is~~ill~viglv~y~~l~~~~~p 33 (122)
T TIGR02588 7 TFGISTLILAAMFGLVAYDWLRYSNKA 33 (122)
T ss_pred hHHHHHHHHHHHHHHHHHHhhccCCCC
Confidence 346778899999999999987755543
No 66
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=34.51 E-value=41 Score=25.95 Aligned_cols=18 Identities=33% Similarity=0.438 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 029466 24 QICLLLAICFWLLHQVRK 41 (193)
Q Consensus 24 QI~lLl~VciWLlYQvkh 41 (193)
-+++||++.+||.|++=+
T Consensus 4 ~~~vll~ll~~l~y~l~~ 21 (105)
T PRK00888 4 LTLLLLALLVWLQYSLWF 21 (105)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 356677777888888743
No 67
>PF12821 DUF3815: Protein of unknown function (DUF3815); InterPro: IPR024528 This domain is found in uncharacterised predicted membrane proteins.
Probab=33.73 E-value=52 Score=25.47 Aligned_cols=22 Identities=18% Similarity=0.226 Sum_probs=18.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHhh
Q 029466 20 KHFLQICLLLAICFWLLHQVRK 41 (193)
Q Consensus 20 Kh~LQI~lLl~VciWLlYQvkh 41 (193)
|+.|-.|.++|.+.|++|.+=.
T Consensus 21 ~r~l~~~~l~g~~~~~v~~~~~ 42 (130)
T PF12821_consen 21 RRALPWAGLIGALGWLVYLLLS 42 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3568889999999999999643
No 68
>PRK13481 glycosyltransferase; Provisional
Probab=33.44 E-value=48 Score=29.41 Aligned_cols=29 Identities=21% Similarity=0.308 Sum_probs=25.1
Q ss_pred ccCcchhHHHHHHHHHHHHHHHHHHHhhh
Q 029466 14 SKGFKVKHFLQICLLLAICFWLLHQVRKS 42 (193)
Q Consensus 14 sKG~kvKh~LQI~lLl~VciWLlYQvkhS 42 (193)
+|-+.+|-+|+|+++++|.+-.+|++--+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 (232)
T PRK13481 4 SKRILLKILLTILIIIALFIGIMYFLSTR 32 (232)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56668999999999999999999988664
No 69
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=33.38 E-value=29 Score=34.74 Aligned_cols=15 Identities=27% Similarity=0.742 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHH
Q 029466 25 ICLLLAICFWLLHQV 39 (193)
Q Consensus 25 I~lLl~VciWLlYQv 39 (193)
.+..++.|+||||||
T Consensus 515 ~~f~v~L~lwmlFQv 529 (636)
T KOG0828|consen 515 YFFAVGLVLWMLFQV 529 (636)
T ss_pred hhhHHHHHHHHHHHH
No 70
>PF11743 DUF3301: Protein of unknown function (DUF3301); InterPro: IPR021732 This family is conserved in Proteobacteria, but the function is not known.
Probab=33.36 E-value=56 Score=24.83 Aligned_cols=22 Identities=36% Similarity=0.626 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhhh
Q 029466 24 QICLLLAICFWLLHQVRKSYDR 45 (193)
Q Consensus 24 QI~lLl~VciWLlYQvkhS~dk 45 (193)
-++|||++++|+.+|...-.+.
T Consensus 3 l~llll~~~~~~~w~~~~~~E~ 24 (97)
T PF11743_consen 3 LLLLLLALVGWFWWQSRRQRER 24 (97)
T ss_pred HHHHHHHHHHHHHHHHhhHHHH
Confidence 4566777777888777665444
No 71
>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes.
Probab=33.22 E-value=43 Score=26.73 Aligned_cols=21 Identities=19% Similarity=0.366 Sum_probs=17.1
Q ss_pred CcchhHHHHHHHHHHHHHHHH
Q 029466 16 GFKVKHFLQICLLLAICFWLL 36 (193)
Q Consensus 16 G~kvKh~LQI~lLl~VciWLl 36 (193)
++..--+-|++|+++|+.|+.
T Consensus 31 ~~~AGi~sq~~lv~glvgW~~ 51 (104)
T PF11460_consen 31 SLSAGIWSQALLVLGLVGWVS 51 (104)
T ss_pred chhhhHHHHHHHHHHHHHHHh
Confidence 345556789999999999986
No 72
>KOG4490 consensus Translocon-associated complex TRAP, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.12 E-value=27 Score=30.05 Aligned_cols=38 Identities=21% Similarity=0.378 Sum_probs=28.6
Q ss_pred ccccCCCccccccCcchhHHHHHHHHHHHHHHHHHHHhh
Q 029466 3 ILKQSSSKNLRSKGFKVKHFLQICLLLAICFWLLHQVRK 41 (193)
Q Consensus 3 MlrqsssRnqRsKG~kvKh~LQI~lLl~VciWLlYQvkh 41 (193)
.|-|+.|||--+||.-. -.+-.+++-++-|||.|-|-|
T Consensus 15 LLLqdfSrn~StKssal-FygNAfIvSa~PiwLfwrih~ 52 (183)
T KOG4490|consen 15 LLLQDFSRNSSTKSSAL-FYGNAFIVSAAPIWLFWRIHQ 52 (183)
T ss_pred HHHHHhhcccccccchh-hhhhhHHHhhhhHHHhhhhhh
Confidence 35578899998888644 345677788889999887765
No 73
>PF15122 TMEM206: TMEM206 protein family
Probab=32.77 E-value=39 Score=31.16 Aligned_cols=18 Identities=28% Similarity=0.323 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 029466 24 QICLLLAICFWLLHQVRK 41 (193)
Q Consensus 24 QI~lLl~VciWLlYQvkh 41 (193)
-.+||.||++.|+||---
T Consensus 20 iYllLmaVAvflayqTI~ 37 (298)
T PF15122_consen 20 IYLLLMAVAVFLAYQTIS 37 (298)
T ss_pred HHHHHHHHHHHHhhhhHH
Confidence 345688999999999544
No 74
>COG4856 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.57 E-value=28 Score=33.51 Aligned_cols=17 Identities=24% Similarity=0.587 Sum_probs=12.7
Q ss_pred hHHHHH-HHHHHHHHHHH
Q 029466 20 KHFLQI-CLLLAICFWLL 36 (193)
Q Consensus 20 Kh~LQI-~lLl~VciWLl 36 (193)
+.++.| |||+|+|+||.
T Consensus 8 ~W~irIiaff~A~~Lfl~ 25 (403)
T COG4856 8 PWLIRIIAFFFAILLFLY 25 (403)
T ss_pred cHhHHHHHHHHHHHhhee
Confidence 445555 59999999985
No 75
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=32.55 E-value=45 Score=29.19 Aligned_cols=21 Identities=14% Similarity=0.392 Sum_probs=14.3
Q ss_pred cchhHHHHHHHHHHHHHHHHH
Q 029466 17 FKVKHFLQICLLLAICFWLLH 37 (193)
Q Consensus 17 ~kvKh~LQI~lLl~VciWLlY 37 (193)
+++=-++-+++|+++++|++|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~ 24 (423)
T TIGR01843 4 ARLITWLIAGLVVIFFLWAYF 24 (423)
T ss_pred hhhHHHHHHHHHHHHHHHHhh
Confidence 344445666777778888887
No 76
>PF15179 Myc_target_1: Myc target protein 1
Probab=32.01 E-value=35 Score=30.01 Aligned_cols=21 Identities=19% Similarity=0.121 Sum_probs=15.0
Q ss_pred ccccccccc------CCCCcccccccc
Q 029466 63 HEGIKLGRK------DVRLPVQQVTLE 83 (193)
Q Consensus 63 ~~~~kLGRK------dl~p~~~e~~~~ 83 (193)
..+--|||| -+||.++-..+.
T Consensus 107 e~~~~~~rKsSFraSTFhP~lq~~~l~ 133 (197)
T PF15179_consen 107 EQANSFPRKSSFRASTFHPFLQCSPLP 133 (197)
T ss_pred CcCcccCCCcccccccccCcccCCCCC
Confidence 455678888 578888777664
No 77
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=31.99 E-value=50 Score=21.87 Aligned_cols=15 Identities=20% Similarity=0.618 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHH
Q 029466 22 FLQICLLLAICFWLL 36 (193)
Q Consensus 22 ~LQI~lLl~VciWLl 36 (193)
++-.++++||++|+.
T Consensus 16 v~~~~~F~gi~~w~~ 30 (49)
T PF05545_consen 16 VLFFVFFIGIVIWAY 30 (49)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344455566666765
No 78
>PRK14125 cell division suppressor protein YneA; Provisional
Probab=31.76 E-value=53 Score=25.35 Aligned_cols=22 Identities=14% Similarity=0.161 Sum_probs=16.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHhh
Q 029466 20 KHFLQICLLLAICFWLLHQVRK 41 (193)
Q Consensus 20 Kh~LQI~lLl~VciWLlYQvkh 41 (193)
.+.+-|+++|++++|.++=..+
T Consensus 8 ~~~~ii~~~l~~~~~~~~~~~~ 29 (103)
T PRK14125 8 IHVSIFFVLTALVLLIFVYATV 29 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHccc
Confidence 4455588999999999985555
No 79
>PF12321 DUF3634: Protein of unknown function (DUF3634); InterPro: IPR022090 This family of proteins is found in bacteria. Proteins in this family are typically between 103 and 114 amino acids in length.
Probab=31.74 E-value=34 Score=27.33 Aligned_cols=19 Identities=32% Similarity=0.621 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 029466 23 LQICLLLAICFWLLHQVRK 41 (193)
Q Consensus 23 LQI~lLl~VciWLlYQvkh 41 (193)
+-|.+.+++++||||-.+|
T Consensus 3 ~~ilia~~li~~Lv~~~r~ 21 (108)
T PF12321_consen 3 YVILIAAALIFWLVFVDRR 21 (108)
T ss_pred hHHHHHHHHHHHHHHcccc
Confidence 3455666688999998886
No 80
>PF14813 NADH_B2: NADH dehydrogenase 1 beta subcomplex subunit 2
Probab=31.48 E-value=82 Score=23.49 Aligned_cols=29 Identities=24% Similarity=0.455 Sum_probs=21.6
Q ss_pred cchhHHHHHHHHHHH-HHHHHHHHhhhhhh
Q 029466 17 FKVKHFLQICLLLAI-CFWLLHQVRKSYDR 45 (193)
Q Consensus 17 ~kvKh~LQI~lLl~V-ciWLlYQvkhS~dk 45 (193)
...+++++.-+|-|+ -+|.||.+-|-++.
T Consensus 16 ~~k~~~~~a~~l~g~mW~WIlwh~whd~~h 45 (71)
T PF14813_consen 16 LTKKQVIMAELLSGFMWFWILWHFWHDPDH 45 (71)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHhcChhh
Confidence 445677777777777 58999999996554
No 81
>PRK13618 psbV cytochrome c-550; Provisional
Probab=31.24 E-value=51 Score=27.77 Aligned_cols=18 Identities=6% Similarity=0.276 Sum_probs=15.2
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 029466 19 VKHFLQICLLLAICFWLL 36 (193)
Q Consensus 19 vKh~LQI~lLl~VciWLl 36 (193)
+|.++.+++|++++||.+
T Consensus 2 ~~~~~~~~~~~v~~~~~~ 19 (163)
T PRK13618 2 FRRLIGVVVATVLLTFQL 19 (163)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 578888888888999976
No 82
>PF10144 SMP_2: Bacterial virulence factor haemolysin; InterPro: IPR019305 This entry represents a group of bacterial proteins that are membrane proteins that effect the expression of haemolysin under anaerobic conditions [].
Probab=31.00 E-value=58 Score=28.24 Aligned_cols=23 Identities=17% Similarity=0.278 Sum_probs=13.6
Q ss_pred cchhHHHHHHHHHHHHHHHHHHH
Q 029466 17 FKVKHFLQICLLLAICFWLLHQV 39 (193)
Q Consensus 17 ~kvKh~LQI~lLl~VciWLlYQv 39 (193)
|++-..+.|.++||+++|+++-+
T Consensus 8 ~rl~r~~iiliclall~~i~~g~ 30 (210)
T PF10144_consen 8 KRLHRTVIILICLALLVIIMQGV 30 (210)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666677777766533
No 83
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=30.98 E-value=70 Score=25.39 Aligned_cols=29 Identities=24% Similarity=0.513 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHH-HHH-Hhhhhhhhhhc
Q 029466 21 HFLQICLLLAICFWL-LHQ-VRKSYDRKKAY 49 (193)
Q Consensus 21 h~LQI~lLl~VciWL-lYQ-vkhS~dkk~~y 49 (193)
.++.+++||+|.+|+ +|. |..-.+++..+
T Consensus 7 ~~i~f~i~l~~l~~~~~~~pi~~~l~~R~~~ 37 (159)
T PRK09173 7 AFVGLVLFLALVVYLKVPGMIARSLDARADR 37 (159)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 345566666666665 456 67767777654
No 84
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=30.75 E-value=27 Score=35.36 Aligned_cols=28 Identities=32% Similarity=0.439 Sum_probs=24.4
Q ss_pred ccccCcchhHHHHHHHHHHHHHHHHHHHh
Q 029466 12 LRSKGFKVKHFLQICLLLAICFWLLHQVR 40 (193)
Q Consensus 12 qRsKG~kvKh~LQI~lLl~VciWLlYQvk 40 (193)
+|+|+| +|.+.-|+++..|.||++....
T Consensus 495 ~r~k~F-l~kAgtiI~~~svlIW~Ls~~p 522 (653)
T COG0370 495 ERSKEF-LKKAGTIILAGSVLIWFLSSFP 522 (653)
T ss_pred HHHHHH-HHHhhHHHHHHHHHHHHHHhCC
Confidence 577777 7889999999999999999885
No 85
>PF14004 DUF4227: Protein of unknown function (DUF4227)
Probab=30.37 E-value=73 Score=23.65 Aligned_cols=22 Identities=18% Similarity=0.325 Sum_probs=17.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHH
Q 029466 18 KVKHFLQICLLLAICFWLLHQV 39 (193)
Q Consensus 18 kvKh~LQI~lLl~VciWLlYQv 39 (193)
++-+.+++++|..+|.-|+|..
T Consensus 2 ~~~~~ik~~~LF~~~T~lfYy~ 23 (71)
T PF14004_consen 2 RWLDMIKFFLLFTGCTLLFYYA 23 (71)
T ss_pred cHHHHHHHHHHHHHHHHHHHHH
Confidence 3557788999999998888874
No 86
>PF13127 DUF3955: Protein of unknown function (DUF3955)
Probab=30.31 E-value=42 Score=24.08 Aligned_cols=21 Identities=29% Similarity=0.452 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhh
Q 029466 25 ICLLLAICFWLLHQVRKSYDR 45 (193)
Q Consensus 25 I~lLl~VciWLlYQvkhS~dk 45 (193)
+++++||..|++|...-||-.
T Consensus 9 ~~~llg~~~l~i~~~~~syVd 29 (63)
T PF13127_consen 9 ILLLLGVVCLFIFNIIGSYVD 29 (63)
T ss_pred HHHHHHHHHHHHHhcccceEC
Confidence 466789999999988876643
No 87
>PF10688 Imp-YgjV: Bacterial inner membrane protein; InterPro: IPR019629 This entry represents inner membrane proteins, many are YgjV proteins. Their function is unknown.
Probab=30.14 E-value=45 Score=27.34 Aligned_cols=18 Identities=22% Similarity=0.619 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 029466 23 LQICLLLAICFWLLHQVR 40 (193)
Q Consensus 23 LQI~lLl~VciWLlYQvk 40 (193)
+.+++|++-++|++|=+-
T Consensus 116 mR~~~l~~~~~w~~~n~~ 133 (163)
T PF10688_consen 116 MRILMLVGTLCWLIYNIL 133 (163)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 778999999999999763
No 88
>TIGR02223 ftsN cell division protein FtsN. FtsN is a poorly conserved protein active in cell division in a number of Proteobacteria. The N-terminal 30 residue region tends to by Lys/Arg-rich, and is followed by a membrane-spanning region. This is followed by an acidic low-complexity region of variable length and a well-conserved C-terminal domain of two tandem regions matched by Pfam model pfam05036 (Sporulation related repeat), found in several cell division and sporulation proteins. The role of FtsN as a suppressor for other cell division mutations is poorly understood; it may involve cell wall hydrolysis.
Probab=29.94 E-value=43 Score=30.46 Aligned_cols=11 Identities=9% Similarity=-0.046 Sum_probs=6.4
Q ss_pred cCCCCcccccc
Q 029466 71 KDVRLPVQQVT 81 (193)
Q Consensus 71 Kdl~p~~~e~~ 81 (193)
.+|+|+-++.-
T Consensus 73 ~~LPpkPeE~w 83 (298)
T TIGR02223 73 ADLPPKPEERW 83 (298)
T ss_pred ccCCCCCcccc
Confidence 35666665554
No 89
>COG3671 Predicted membrane protein [Function unknown]
Probab=29.93 E-value=57 Score=26.93 Aligned_cols=19 Identities=16% Similarity=0.522 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 029466 24 QICLLLAICFWLLHQVRKS 42 (193)
Q Consensus 24 QI~lLl~VciWLlYQvkhS 42 (193)
-+++|+|+.+|.+|-+--+
T Consensus 89 Gv~i~~AlgvW~i~Riv~G 107 (125)
T COG3671 89 GVVILVALGVWYIYRIVIG 107 (125)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4677889999999988664
No 90
>PF07359 LEAP-2: Liver-expressed antimicrobial peptide 2 precursor (LEAP-2); InterPro: IPR009955 This family consists of several mammalian liver-expressed antimicrobial peptide 2 (LEAP-2) sequences. LEAP-2 is a cysteine-rich, and cationic protein. LEAP-2 contains a core structure with two disulphide bonds formed by cysteine residues in relative 1-3 and 2-4 positions. LEAP-2 is synthesised as a 77-residue precursor, which is predominantly expressed in the liver and highly conserved among mammals. The largest native LEAP-2 form of 40 amino acid residues is generated from the precursor at a putative cleavage site for a furin-like endoprotease. In contrast to smaller LEAP-2 variants, this peptide exhibits dose-dependent antimicrobial activity against selected microbial model organisms []. The exact function of this family is unclear.; GO: 0042742 defense response to bacterium; PDB: 2L1Q_A.
Probab=29.81 E-value=18 Score=27.68 Aligned_cols=23 Identities=39% Similarity=0.595 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Q 029466 21 HFLQICLLLAICFWLLHQVRKSY 43 (193)
Q Consensus 21 h~LQI~lLl~VciWLlYQvkhS~ 43 (193)
+.|+|+.+|-||.-|++||.-|.
T Consensus 2 ~~lkl~A~lli~lLL~~QV~~sP 24 (77)
T PF07359_consen 2 WHLKLFAVLLICLLLLQQVDSSP 24 (77)
T ss_dssp -----------------------
T ss_pred hHHHHHHHHHHHHHHHHHhcCCC
Confidence 45788888889999999997763
No 91
>PF13906 AA_permease_C: C-terminus of AA_permease
Probab=29.80 E-value=30 Score=23.87 Aligned_cols=19 Identities=21% Similarity=0.369 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 029466 24 QICLLLAICFWLLHQVRKS 42 (193)
Q Consensus 24 QI~lLl~VciWLlYQvkhS 42 (193)
-|-+++|+.|.+.|=++||
T Consensus 33 ~iWl~iGl~iYf~YG~~hS 51 (51)
T PF13906_consen 33 GIWLAIGLVIYFGYGIRHS 51 (51)
T ss_pred HHHHHHHHHHHHheeeecC
Confidence 3556677777777777776
No 92
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=29.71 E-value=20 Score=31.19 Aligned_cols=18 Identities=11% Similarity=0.010 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 029466 22 FLQICLLLAICFWLLHQV 39 (193)
Q Consensus 22 ~LQI~lLl~VciWLlYQv 39 (193)
++-+|+|+++++||+|+=
T Consensus 10 ~~~~~~~~~~~~~~~~~~ 27 (331)
T PRK03598 10 AVVVLAAAVAGGWWWYQS 27 (331)
T ss_pred HHHHHHHHHHHheeEeee
Confidence 445677788888998864
No 93
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=29.67 E-value=67 Score=27.76 Aligned_cols=20 Identities=30% Similarity=0.263 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHhhhhhhhhh
Q 029466 29 LAICFWLLHQVRKSYDRKKA 48 (193)
Q Consensus 29 l~VciWLlYQvkhS~dkk~~ 48 (193)
|.+.||+|--+-.|+-||++
T Consensus 41 liiiiivli~lcssRKkKaa 60 (189)
T PF05568_consen 41 LIIIIIVLIYLCSSRKKKAA 60 (189)
T ss_pred HHHHHHHHHHHHhhhhHHHH
Confidence 33455665555555655543
No 94
>PF06796 NapE: Periplasmic nitrate reductase protein NapE; InterPro: IPR010649 This family consists of several bacterial periplasmic nitrate reductase NapE proteins. Seven genes, napKEFDABC, encoding the periplasmic nitrate reductase system were cloned from the denitrifying phototrophic bacterium Rhodobacter sphaeroides. NapE is thought to be a transmembrane protein [].
Probab=29.32 E-value=79 Score=22.70 Aligned_cols=12 Identities=33% Similarity=0.694 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHH
Q 029466 23 LQICLLLAICFW 34 (193)
Q Consensus 23 LQI~lLl~VciW 34 (193)
|..+++|+|++|
T Consensus 18 ~~~flfl~~~l~ 29 (56)
T PF06796_consen 18 LKAFLFLAVVLF 29 (56)
T ss_pred HHHHHHHHHHHH
Confidence 344444444443
No 95
>TIGR00445 mraY phospho-N-acetylmuramoyl-pentapeptide-transferase. Involved in peptidoglycan biosynthesis, the enzyme catalyzes the first of the lipid cycle reactions. Also known as Muramoyl-Pentapeptide Transferase (murX).
Probab=29.22 E-value=64 Score=29.17 Aligned_cols=27 Identities=41% Similarity=0.683 Sum_probs=16.7
Q ss_pred ccccccCcc--hhHHHHHHHHHHHHHHHH
Q 029466 10 KNLRSKGFK--VKHFLQICLLLAICFWLL 36 (193)
Q Consensus 10 RnqRsKG~k--vKh~LQI~lLl~VciWLl 36 (193)
|+++++|++ +|-++|++.-+.+++|+.
T Consensus 85 ~~~~~~gl~~~~rl~~q~~~a~~~~~~~~ 113 (321)
T TIGR00445 85 KRKSNKGLTAKQKLFGQIIIALIFCTWLY 113 (321)
T ss_pred hccCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 455677775 455677766665556663
No 96
>PRK11246 hypothetical protein; Provisional
Probab=29.01 E-value=54 Score=29.12 Aligned_cols=26 Identities=15% Similarity=0.217 Sum_probs=21.5
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHhh
Q 029466 16 GFKVKHFLQICLLLAICFWLLHQVRK 41 (193)
Q Consensus 16 G~kvKh~LQI~lLl~VciWLlYQvkh 41 (193)
.||+-..++|++++|+.+||++=+..
T Consensus 7 ~fRl~r~~iiliclallv~l~~g~s~ 32 (218)
T PRK11246 7 KFRLHRTAIVLICLALLVALMQGASW 32 (218)
T ss_pred HhHHHHHHHHHHHHHHHHHHHhchhh
Confidence 68888999999999999998875443
No 97
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=28.39 E-value=61 Score=24.93 Aligned_cols=29 Identities=28% Similarity=0.293 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHH-Hhhhhhhhhhc
Q 029466 21 HFLQICLLLAICFWLLHQ-VRKSYDRKKAY 49 (193)
Q Consensus 21 h~LQI~lLl~VciWLlYQ-vkhS~dkk~~y 49 (193)
+++.+++|+.|+-|++|- |...-+++..+
T Consensus 11 ~~i~flil~~ll~~~l~~pi~~~l~~R~~~ 40 (140)
T PRK07353 11 MAVQFVLLTFILNALFYKPVGKVVEEREDY 40 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777777777776 56666666543
No 98
>TIGR03876 cas_csaX CRISPR-associated protein, CsaX family. This family comprises a minor CRISPR-associated protein family. It occurs only in the context of the (strictly archaeal) Apern subtype of CRISPR/Cas system, and is further restricted to the Sulfolobales, including Metallosphaera sedula DSM 5348 and multiple species of the genus Sulfolobus.
Probab=28.33 E-value=43 Score=30.50 Aligned_cols=21 Identities=43% Similarity=0.613 Sum_probs=15.8
Q ss_pred ccCcchhHHHHHHHHHHHHHHHHHHHhhh
Q 029466 14 SKGFKVKHFLQICLLLAICFWLLHQVRKS 42 (193)
Q Consensus 14 sKG~kvKh~LQI~lLl~VciWLlYQvkhS 42 (193)
--|||+-. |.++||.|||-.|
T Consensus 166 ipG~kPeT--------AF~lwlA~~vvss 186 (281)
T TIGR03876 166 IPGFKPET--------AFLLWLAYQVVSS 186 (281)
T ss_pred CCCcCcch--------HHHHHHHHHHHhc
Confidence 34666655 4578999999887
No 99
>PLN03112 cytochrome P450 family protein; Provisional
Probab=27.82 E-value=55 Score=29.85 Aligned_cols=21 Identities=14% Similarity=0.143 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 029466 21 HFLQICLLLAICFWLLHQVRK 41 (193)
Q Consensus 21 h~LQI~lLl~VciWLlYQvkh 41 (193)
..|-|||.+++|+|++|-+-+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~ 24 (514)
T PLN03112 4 FLLSLLFSVLIFNVLIWRWLN 24 (514)
T ss_pred hHHHHHHHHHHHHHHHHHHcc
Confidence 456667767777766665444
No 100
>PF14875 PIP49_N: N-term cysteine-rich ER, FAM69
Probab=27.62 E-value=24 Score=29.38 Aligned_cols=27 Identities=22% Similarity=0.344 Sum_probs=20.7
Q ss_pred cccCcchhHHHHHHHHHHHHHHHHHHH
Q 029466 13 RSKGFKVKHFLQICLLLAICFWLLHQV 39 (193)
Q Consensus 13 RsKG~kvKh~LQI~lLl~VciWLlYQv 39 (193)
|--|+|+|=+|-..|.+.|.+|++|=.
T Consensus 2 Rl~~~~~~y~~~~~l~vl~~s~v~yv~ 28 (158)
T PF14875_consen 2 RLSGRRVKYLFLTWLAVLVGSWVVYVH 28 (158)
T ss_pred CCCCceEEEEeehhhHHHHHHHHHHhh
Confidence 344788888888888888899997743
No 101
>PF11808 DUF3329: Domain of unknown function (DUF3329); InterPro: IPR021766 This family of proteins are functionally uncharacterised. This family is only found in bacteria. ; GO: 0004673 protein histidine kinase activity
Probab=27.55 E-value=79 Score=23.46 Aligned_cols=14 Identities=43% Similarity=0.740 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHhh
Q 029466 28 LLAICFWLLHQVRK 41 (193)
Q Consensus 28 Ll~VciWLlYQvkh 41 (193)
|++..+|-+||+..
T Consensus 37 l~~~l~wh~~~l~r 50 (90)
T PF11808_consen 37 LLLYLFWHLYQLYR 50 (90)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444555566554
No 102
>TIGR01107 Na_K_ATPase_bet Sodium Potassium ATPase beta subunit. This model describes the Na+/K+ ATPase beta subunit in eukaryotes. Na+/K+ ATPase(also called Sodium-Potassium pump) is intimately associated with the plasma membrane. It couples the energy released by the hydrolysis of ATP to extrude 3 Na+ ions, with the concomitant uptake of 2K+ ions, against their ionic gradients.
Probab=27.47 E-value=57 Score=29.70 Aligned_cols=16 Identities=6% Similarity=0.127 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHhhhh
Q 029466 28 LLAICFWLLHQVRKSY 43 (193)
Q Consensus 28 Ll~VciWLlYQvkhS~ 43 (193)
|.++|+|+|+|.=..|
T Consensus 53 ~F~~~m~v~l~Tl~~~ 68 (289)
T TIGR01107 53 IFIGTIQVMLQTISDF 68 (289)
T ss_pred HHHHHHHHHHHHcCCC
Confidence 4789999999876644
No 103
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=27.30 E-value=24 Score=26.98 Aligned_cols=23 Identities=17% Similarity=0.276 Sum_probs=15.6
Q ss_pred CcchhHHHHHHHHHHHHHHHHHH
Q 029466 16 GFKVKHFLQICLLLAICFWLLHQ 38 (193)
Q Consensus 16 G~kvKh~LQI~lLl~VciWLlYQ 38 (193)
|+=|=-++-|.+|+||++|+++.
T Consensus 70 gi~vg~~~~v~~lv~~l~w~f~~ 92 (96)
T PTZ00382 70 GISVAVVAVVGGLVGFLCWWFVC 92 (96)
T ss_pred EEEeehhhHHHHHHHHHhheeEE
Confidence 44455566677888888888653
No 104
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=27.26 E-value=88 Score=25.37 Aligned_cols=31 Identities=10% Similarity=0.137 Sum_probs=20.5
Q ss_pred hhHHHHHHHHHHHHHHHHHH-Hhhhhhhhhhc
Q 029466 19 VKHFLQICLLLAICFWLLHQ-VRKSYDRKKAY 49 (193)
Q Consensus 19 vKh~LQI~lLl~VciWLlYQ-vkhS~dkk~~y 49 (193)
+-+++..++|++|+.|++|. |..-.++++.+
T Consensus 20 ~~~~i~Flil~~iL~~~~~kpi~~~l~~R~~~ 51 (173)
T PRK13460 20 VWTLVTFLVVVLVLKKFAWDVILKALDERASG 51 (173)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 34566677777777777776 55566666543
No 105
>cd01324 cbb3_Oxidase_CcoQ Cytochrome cbb oxidase CcoQ. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found exclusively in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two hemes, respectively, to transfer electrons to the binuclear center. ccoQ, the fourth subunit, is a single transmembrane helix protein. It has been shown to protect the core complex from proteolytic degradation by serine proteases. See cd00919, cd01322
Probab=27.24 E-value=64 Score=21.94 Aligned_cols=11 Identities=18% Similarity=0.763 Sum_probs=8.3
Q ss_pred HHHHHHHHHHH
Q 029466 26 CLLLAICFWLL 36 (193)
Q Consensus 26 ~lLl~VciWLl 36 (193)
++.||||+|..
T Consensus 21 ~~Figiv~wa~ 31 (48)
T cd01324 21 LFFLGVVVWAF 31 (48)
T ss_pred HHHHHHHHHHh
Confidence 66688888865
No 106
>PRK13254 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=27.18 E-value=74 Score=26.21 Aligned_cols=21 Identities=14% Similarity=0.097 Sum_probs=17.2
Q ss_pred chhHHHHHHHHHHHHHHHHHH
Q 029466 18 KVKHFLQICLLLAICFWLLHQ 38 (193)
Q Consensus 18 kvKh~LQI~lLl~VciWLlYQ 38 (193)
|++-++-++++|++.+||+|-
T Consensus 8 rl~~~~~~~~~~~~~~~L~~~ 28 (148)
T PRK13254 8 RLLIILGALAALGLAVALVLY 28 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 567788888888888999886
No 107
>PF11143 DUF2919: Protein of unknown function (DUF2919); InterPro: IPR021318 This bacterial family of proteins has no known function. Some members are annotated as YfeZ however this cannot be confirmed.
Probab=27.18 E-value=77 Score=26.09 Aligned_cols=29 Identities=17% Similarity=0.139 Sum_probs=17.0
Q ss_pred CcchhHHHHHHHHHHH---HHHHHHHHhhhhh
Q 029466 16 GFKVKHFLQICLLLAI---CFWLLHQVRKSYD 44 (193)
Q Consensus 16 G~kvKh~LQI~lLl~V---ciWLlYQvkhS~d 44 (193)
..++=+.....||+++ ++|++||+-|+|.
T Consensus 83 ~~~lwr~~r~lLl~~~~~~l~~~~~~l~~~~~ 114 (149)
T PF11143_consen 83 LNRLWRAGRWLLLLSLLVDLVWQLYHLWLQHG 114 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3335555555555544 5677777777765
No 108
>PF15207 TMEM240: TMEM240 family
Probab=26.99 E-value=52 Score=28.23 Aligned_cols=15 Identities=47% Similarity=1.065 Sum_probs=10.7
Q ss_pred HHHHHHHHHHH-HHHH
Q 029466 23 LQICLLLAICF-WLLH 37 (193)
Q Consensus 23 LQI~lLl~Vci-WLlY 37 (193)
|-+-||||.|| |+|-
T Consensus 90 lmlglllgfcisw~l~ 105 (180)
T PF15207_consen 90 LMLGLLLGFCISWFLV 105 (180)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 45567999998 6554
No 109
>PF14089 KbaA: KinB-signalling pathway activation in sporulation
Probab=26.95 E-value=67 Score=27.84 Aligned_cols=23 Identities=17% Similarity=0.104 Sum_probs=19.5
Q ss_pred cchhHHHHHHHHHHHHHHHHHHH
Q 029466 17 FKVKHFLQICLLLAICFWLLHQV 39 (193)
Q Consensus 17 ~kvKh~LQI~lLl~VciWLlYQv 39 (193)
.++-+.+|+++.+-|.++|+|--
T Consensus 68 ~~lWn~vQ~~li~fvlfDLvY~R 90 (180)
T PF14089_consen 68 KSLWNAVQLVLIAFVLFDLVYFR 90 (180)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHH
Confidence 34678999999999999999854
No 110
>PRK11486 flagellar biosynthesis protein FliO; Provisional
Probab=26.71 E-value=59 Score=26.42 Aligned_cols=10 Identities=30% Similarity=0.727 Sum_probs=4.6
Q ss_pred HHHHHHHHHH
Q 029466 27 LLLAICFWLL 36 (193)
Q Consensus 27 lLl~VciWLl 36 (193)
+||.+|.||+
T Consensus 30 ~lI~~~aWLl 39 (124)
T PRK11486 30 ALILAAAWLV 39 (124)
T ss_pred HHHHHHHHHH
Confidence 3344444554
No 111
>KOG1313 consensus DHHC-type Zn-finger proteins [General function prediction only]
Probab=26.70 E-value=71 Score=29.81 Aligned_cols=27 Identities=30% Similarity=0.327 Sum_probs=19.4
Q ss_pred hhHHHHHHHHHHHH-HHHHHHHhhhhhh
Q 029466 19 VKHFLQICLLLAIC-FWLLHQVRKSYDR 45 (193)
Q Consensus 19 vKh~LQI~lLl~Vc-iWLlYQvkhS~dk 45 (193)
++.++-.++|++|| |||||-|-.=|=|
T Consensus 60 ~~~~~~~~f~~~~l~i~~l~nvi~hy~k 87 (309)
T KOG1313|consen 60 VILAVFMLFLLATLAIYLLSNVIFHYYK 87 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhee
Confidence 55566666777776 9999998774544
No 112
>KOG1623 consensus Multitransmembrane protein [General function prediction only]
Probab=26.58 E-value=58 Score=29.15 Aligned_cols=21 Identities=29% Similarity=0.398 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 029466 21 HFLQICLLLAICFWLLHQVRK 41 (193)
Q Consensus 21 h~LQI~lLl~VciWLlYQvkh 41 (193)
-.|+.+++|..+.|++|=+-+
T Consensus 161 f~Ls~a~fl~a~~W~lYGlli 181 (243)
T KOG1623|consen 161 FPLSFALFLVAVQWLLYGLLI 181 (243)
T ss_pred hHHHHHHHHHHHHHHHHHHHh
Confidence 357899999999999999887
No 113
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=26.44 E-value=22 Score=33.60 Aligned_cols=20 Identities=30% Similarity=0.587 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 029466 22 FLQICLLLAICFWLLHQVRK 41 (193)
Q Consensus 22 ~LQI~lLl~VciWLlYQvkh 41 (193)
.+-++|+||+.|||-|.=..
T Consensus 170 L~WL~LFlaiLIWlY~H~~~ 189 (381)
T PF05297_consen 170 LYWLLLFLAILIWLYVHDQR 189 (381)
T ss_dssp --------------------
T ss_pred HHHHHHHHHHHHHHHhcCCC
Confidence 35567889999999886443
No 114
>PRK09917 hypothetical protein; Provisional
Probab=26.41 E-value=68 Score=26.43 Aligned_cols=23 Identities=17% Similarity=0.020 Sum_probs=19.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhh
Q 029466 19 VKHFLQICLLLAICFWLLHQVRK 41 (193)
Q Consensus 19 vKh~LQI~lLl~VciWLlYQvkh 41 (193)
.|+.|-+|-++|.+-|++|-+-.
T Consensus 31 P~r~l~~~~i~G~vgw~vy~~~~ 53 (157)
T PRK09917 31 PVRALRWCALLGAIGHGSRMLMM 53 (157)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH
Confidence 36889999999999999997654
No 115
>PF02937 COX6C: Cytochrome c oxidase subunit VIc; InterPro: IPR004204 Cytochrome c oxidase, a 13 subunit complex, 1.9.3.1 from EC is the terminal oxidase in the mitochondrial electron transport chain. This family is composed of cytochrome c oxidase subunit VIc.; GO: 0004129 cytochrome-c oxidase activity; PDB: 3AG4_I 2DYS_V 3ASO_I 2EIK_V 2EIM_I 1OCC_V 1V54_V 1OCO_V 3ASN_V 2EIL_I ....
Probab=26.35 E-value=1.1e+02 Score=22.73 Aligned_cols=36 Identities=22% Similarity=0.367 Sum_probs=16.8
Q ss_pred cCcchhHH---HHHHHHHHHHHHHHHHHhhhhhhhhhcc
Q 029466 15 KGFKVKHF---LQICLLLAICFWLLHQVRKSYDRKKAYE 50 (193)
Q Consensus 15 KG~kvKh~---LQI~lLl~VciWLlYQvkhS~dkk~~y~ 50 (193)
+|+-.|++ |-++++|++++-++|=+-+.--+|++|.
T Consensus 10 rgll~~~l~~~i~~a~~ls~~~~~~~kf~v~~pRKk~Ya 48 (73)
T PF02937_consen 10 RGLLAKRLKRHIVVAFVLSLGVAAAYKFGVAEPRKKAYA 48 (73)
T ss_dssp BSHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 45444433 3344444444444555555445555553
No 116
>PRK01294 lipase chaperone; Provisional
Probab=26.34 E-value=61 Score=29.79 Aligned_cols=23 Identities=17% Similarity=0.053 Sum_probs=15.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHh
Q 029466 18 KVKHFLQICLLLAICFWLLHQVR 40 (193)
Q Consensus 18 kvKh~LQI~lLl~VciWLlYQvk 40 (193)
|.|.++-|+++.+||||.||-+-
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~ 24 (336)
T PRK01294 2 KKKRALSLGLVGLVAIGAVWLWP 24 (336)
T ss_pred cchhhHHHHHHHHHHHHHHHHhc
Confidence 45666777777777777666653
No 117
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=26.32 E-value=94 Score=25.36 Aligned_cols=31 Identities=6% Similarity=0.359 Sum_probs=22.1
Q ss_pred hhHHHHHHHHHHHHHHHHHH-Hhhhhhhhhhc
Q 029466 19 VKHFLQICLLLAICFWLLHQ-VRKSYDRKKAY 49 (193)
Q Consensus 19 vKh~LQI~lLl~VciWLlYQ-vkhS~dkk~~y 49 (193)
+=+++.+++|++++..++|. |....+++..+
T Consensus 26 ~~~~inflil~~lL~~fl~kPi~~~l~~R~~~ 57 (167)
T PRK08475 26 IERTINFLIFVGILWYFAAKPLKNFYKSRINK 57 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677778888888888887 66667776644
No 118
>PRK15071 lipopolysaccharide ABC transporter permease; Provisional
Probab=26.28 E-value=1.1e+02 Score=26.97 Aligned_cols=35 Identities=11% Similarity=0.135 Sum_probs=0.0
Q ss_pred ccccccCcchhHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 029466 10 KNLRSKGFKVKHFLQICLLLAICFWLLHQVRKSYDRK 46 (193)
Q Consensus 10 RnqRsKG~kvKh~LQI~lLl~VciWLlYQvkhS~dkk 46 (193)
+++|+.| .-..+=+++++|+++|++.++-.+....
T Consensus 294 ~~~R~~~--~~~~i~~~i~~~~~y~~~~~~~~~lg~~ 328 (356)
T PRK15071 294 GPLRSVT--MGARVVTGISFGFVFYVSNEIFGPLSLV 328 (356)
T ss_pred CCCcccc--chHHHHHHHHHHHHHHHHHHHHHHHHHh
No 119
>TIGR02972 TMAO_torE trimethylamine N-oxide reductase system, TorE protein. Members of this small, apparent transmembrane protein are designated TorE and occur in operons for the trimethylamine N-oxide (TMAO) reductase system. Members are closely related to the NapE protein of the related periplasmic nitrate reductase system. It may be that TorE is an integral membrane subunit of a complex with the reductase TorA.
Probab=26.18 E-value=82 Score=22.01 Aligned_cols=15 Identities=7% Similarity=0.146 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHH
Q 029466 21 HFLQICLLLAICFWL 35 (193)
Q Consensus 21 h~LQI~lLl~VciWL 35 (193)
.=|..+++|+|++|=
T Consensus 8 ~El~~flfl~v~l~P 22 (47)
T TIGR02972 8 NELKALGFIIVVLFP 22 (47)
T ss_pred HHHHHHHHHHHHHHH
Confidence 345555555555553
No 120
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=26.15 E-value=55 Score=24.13 Aligned_cols=22 Identities=23% Similarity=0.386 Sum_probs=18.1
Q ss_pred CcchhHHHHHHHHHHHHHHHHH
Q 029466 16 GFKVKHFLQICLLLAICFWLLH 37 (193)
Q Consensus 16 G~kvKh~LQI~lLl~VciWLlY 37 (193)
+-+.|..-.|.+++|+.+|++|
T Consensus 60 S~~Ak~~~~ia~~~g~~~~i~~ 81 (82)
T PF04505_consen 60 SRKAKKWSIIAIIIGIVIIILL 81 (82)
T ss_pred HHHhHHHHHHHHHHHHHHHhee
Confidence 4567888888999999998876
No 121
>KOG4595 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.10 E-value=76 Score=26.61 Aligned_cols=30 Identities=23% Similarity=0.315 Sum_probs=23.6
Q ss_pred cchhHHHHHHHHHHH---HHHHHHHHhhhhhhh
Q 029466 17 FKVKHFLQICLLLAI---CFWLLHQVRKSYDRK 46 (193)
Q Consensus 17 ~kvKh~LQI~lLl~V---ciWLlYQvkhS~dkk 46 (193)
+=.+|++++..|||- |+||--|+.||---+
T Consensus 43 ~Gl~~G~~~g~llG~~~Gc~~l~~~~lhs~~~~ 75 (139)
T KOG4595|consen 43 LGLAHGFSLGELLGKILGCVVLWQQLLHSPKTR 75 (139)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHhccCCchh
Confidence 346899999999864 999999999974333
No 122
>KOG4826 consensus C-8,7 sterol isomerase [Lipid transport and metabolism]
Probab=26.05 E-value=65 Score=28.93 Aligned_cols=19 Identities=37% Similarity=0.754 Sum_probs=14.7
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 029466 19 VKHFLQICLLLAICFWLLH 37 (193)
Q Consensus 19 vKh~LQI~lLl~VciWLlY 37 (193)
++-.|-.++|+++|+||+.
T Consensus 29 ~sil~~~~~l~v~~~~lls 47 (229)
T KOG4826|consen 29 LSILLSVTLLLVVTTWLLS 47 (229)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3445667889999999985
No 123
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=26.01 E-value=71 Score=22.33 Aligned_cols=15 Identities=13% Similarity=0.197 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHH
Q 029466 21 HFLQICLLLAICFWL 35 (193)
Q Consensus 21 h~LQI~lLl~VciWL 35 (193)
.+|-|+.|||++||-
T Consensus 8 ~i~iv~~lLg~~I~~ 22 (50)
T PF12606_consen 8 SIFIVMGLLGLSICT 22 (50)
T ss_pred HHHHHHHHHHHHHHH
Confidence 456677778888883
No 124
>PF06116 RinB: Transcriptional activator RinB; InterPro: IPR009300 This family consists of several Staphylococcus aureus bacteriophage RinB proteins and related sequences from their host. The int gene of staphylococcal bacteriophage phi 11 is the only viral gene responsible for the integrative recombination of phi 11. rinA and rinB, are both required to activate expression of the int gene [].
Probab=25.90 E-value=1e+02 Score=22.18 Aligned_cols=22 Identities=18% Similarity=0.419 Sum_probs=16.5
Q ss_pred chhHHHHHHHHHHH---HHHHHHHH
Q 029466 18 KVKHFLQICLLLAI---CFWLLHQV 39 (193)
Q Consensus 18 kvKh~LQI~lLl~V---ciWLlYQv 39 (193)
.||++|+|.++||+ +=|+..|+
T Consensus 1 MIKrilkiwftiamYELgK~i~~el 25 (53)
T PF06116_consen 1 MIKRILKIWFTIAMYELGKYITEEL 25 (53)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 48999999998885 45666555
No 125
>PF11446 DUF2897: Protein of unknown function (DUF2897); InterPro: IPR021550 This is a bacterial family of uncharacterised proteins.
Probab=25.84 E-value=90 Score=22.06 Aligned_cols=24 Identities=17% Similarity=0.249 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhh
Q 029466 22 FLQICLLLAICFWLLHQVRKSYDR 45 (193)
Q Consensus 22 ~LQI~lLl~VciWLlYQvkhS~dk 45 (193)
+|-|+|.|||+|--|--||+|-..
T Consensus 6 wlIIviVlgvIigNia~LK~sAk~ 29 (55)
T PF11446_consen 6 WLIIVIVLGVIIGNIAALKYSAKM 29 (55)
T ss_pred hHHHHHHHHHHHhHHHHHHHhccc
Confidence 567889999999999999997553
No 126
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=25.70 E-value=87 Score=22.53 Aligned_cols=19 Identities=16% Similarity=0.392 Sum_probs=10.4
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 029466 19 VKHFLQICLLLAICFWLLH 37 (193)
Q Consensus 19 vKh~LQI~lLl~VciWLlY 37 (193)
+|-.+-++++++++||+++
T Consensus 66 ~k~~~i~~~iv~~~~~~i~ 84 (89)
T PF00957_consen 66 YKLYIIIIIIVIIIILIII 84 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHhhhhhhhhHHH
Confidence 4444555555556666554
No 127
>PRK09506 mrcB bifunctional glycosyl transferase/transpeptidase; Reviewed
Probab=25.58 E-value=85 Score=32.38 Aligned_cols=16 Identities=13% Similarity=0.426 Sum_probs=7.6
Q ss_pred HHHHHHHHHHH--HHHHH
Q 029466 22 FLQICLLLAIC--FWLLH 37 (193)
Q Consensus 22 ~LQI~lLl~Vc--iWLlY 37 (193)
+|.|+|+++|+ +|.+|
T Consensus 67 ~~~~~~~~~~~~~~~~~y 84 (830)
T PRK09506 67 LLKLFIVFAVLIAIYGVY 84 (830)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 44444433333 37776
No 128
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=25.15 E-value=84 Score=25.46 Aligned_cols=27 Identities=22% Similarity=0.230 Sum_probs=19.6
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHhhh
Q 029466 16 GFKVKHFLQICLLLAICFWLLHQVRKS 42 (193)
Q Consensus 16 G~kvKh~LQI~lLl~VciWLlYQvkhS 42 (193)
|+....++--++-++|.|||||-+-.-
T Consensus 16 ~~~~~~~~~~iinflIl~~lL~~fl~k 42 (174)
T PRK07352 16 GLNLNLLETNLINLAIVIGLLYYFGRG 42 (174)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHhHH
Confidence 666666665567778889999987654
No 129
>PF06724 DUF1206: Domain of Unknown Function (DUF1206); InterPro: IPR009597 This region consists of two a pair of transmembrane helices and occurs three times in each of the family member proteins.
Probab=25.10 E-value=85 Score=22.00 Aligned_cols=12 Identities=17% Similarity=0.426 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHH
Q 029466 27 LLLAICFWLLHQ 38 (193)
Q Consensus 27 lLl~VciWLlYQ 38 (193)
.|+++++|.+|+
T Consensus 56 gli~~gi~~~~~ 67 (73)
T PF06724_consen 56 GLIGYGIWQFVK 67 (73)
T ss_pred HHHHHHHHHHHH
Confidence 344555555554
No 130
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=25.09 E-value=1.5e+02 Score=21.83 Aligned_cols=36 Identities=14% Similarity=0.109 Sum_probs=24.6
Q ss_pred cCCCcccccc-CcchhHHHHHHHHHHHHHHHHHHHhh
Q 029466 6 QSSSKNLRSK-GFKVKHFLQICLLLAICFWLLHQVRK 41 (193)
Q Consensus 6 qsssRnqRsK-G~kvKh~LQI~lLl~VciWLlYQvkh 41 (193)
|.-++++..+ ..-+++++.+.+++++.+|++..+-.
T Consensus 58 ~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (162)
T PF01554_consen 58 QNIGAGDYKRAKKVVRQGLLLSLIIGLLLSLVLLLFS 94 (162)
T ss_dssp CCCCSSSTTTCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccchhcccchhhhhhhHH
Confidence 4444444443 44568889999999999888866654
No 131
>PF07022 Phage_CI_repr: Bacteriophage CI repressor helix-turn-helix domain; InterPro: IPR010744 This family consists of several phage CI repressor proteins and related bacterial sequences. The CI repressor is known to function as a transcriptional switch, determining whether transcription is lytic or lysogenic [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent; PDB: 2FJR_B.
Probab=24.84 E-value=60 Score=22.48 Aligned_cols=20 Identities=25% Similarity=0.637 Sum_probs=13.7
Q ss_pred chhHHHHHHHHHHHHH-HHHH
Q 029466 18 KVKHFLQICLLLAICF-WLLH 37 (193)
Q Consensus 18 kvKh~LQI~lLl~Vci-WLlY 37 (193)
-.+-+++|+..++|.+ ||+|
T Consensus 40 P~~~l~~ia~~~gvsl~WLlt 60 (66)
T PF07022_consen 40 PAEWLIKIALETGVSLDWLLT 60 (66)
T ss_dssp -HHHHHHHHHHH---HHHHHC
T ss_pred CHHHHHHHHHHHCcCHHHHHh
Confidence 4778889999999977 9986
No 132
>PF12553 DUF3742: Protein of unknown function (DUF3742); InterPro: IPR022213 This domain family is found in bacteria, and is approximately 50 amino acids in length. There is a single completely conserved residue Y that may be functionally important.
Probab=24.82 E-value=69 Score=22.54 Aligned_cols=15 Identities=20% Similarity=0.461 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHh
Q 029466 26 CLLLAICFWLLHQVR 40 (193)
Q Consensus 26 ~lLl~VciWLlYQvk 40 (193)
.++++|.+|++=+..
T Consensus 5 l~f~~iaaw~~~~~~ 19 (54)
T PF12553_consen 5 LVFAAIAAWMARNPD 19 (54)
T ss_pred HHHHHHHHHHHhCCc
Confidence 677889999986554
No 133
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=24.70 E-value=66 Score=27.49 Aligned_cols=17 Identities=35% Similarity=0.655 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 029466 22 FLQICLLLAICFWLLHQ 38 (193)
Q Consensus 22 ~LQI~lLl~VciWLlYQ 38 (193)
.||+.+-++.|||.||+
T Consensus 118 ~l~Lal~~~~~iyfl~~ 134 (194)
T PF11833_consen 118 GLQLALGLGACIYFLNR 134 (194)
T ss_pred chHHHHHHHHHHHHHHH
Confidence 46777788888888775
No 134
>PF10812 DUF2561: Protein of unknown function (DUF2561); InterPro: IPR024381 This family of proteins with unknown function appears to be found predominantly in Mycobacterium spp.
Probab=24.65 E-value=49 Score=29.31 Aligned_cols=12 Identities=42% Similarity=1.043 Sum_probs=7.9
Q ss_pred HHHHHH--HHHHHH
Q 029466 27 LLLAIC--FWLLHQ 38 (193)
Q Consensus 27 lLl~Vc--iWLlYQ 38 (193)
+|||+| |||.+-
T Consensus 23 iLlG~CaaiWLa~l 36 (207)
T PF10812_consen 23 ILLGACAAIWLAAL 36 (207)
T ss_pred HHHHHHHHHHHHHH
Confidence 455555 899874
No 135
>PF14715 FixP_N: N-terminal domain of cytochrome oxidase-cbb3, FixP
Probab=24.64 E-value=83 Score=21.84 Aligned_cols=20 Identities=10% Similarity=0.150 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 029466 21 HFLQICLLLAICFWLLHQVR 40 (193)
Q Consensus 21 h~LQI~lLl~VciWLlYQvk 40 (193)
-+|-++++.||.-|++|.+-
T Consensus 26 ~~f~~tivfa~~Y~~~yp~~ 45 (51)
T PF14715_consen 26 WLFYGTIVFAVGYLVLYPGL 45 (51)
T ss_pred HHHHHHHHHHHHHHHHHhcc
Confidence 35666777777788888654
No 136
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=24.54 E-value=1.2e+02 Score=21.37 Aligned_cols=17 Identities=29% Similarity=0.477 Sum_probs=15.4
Q ss_pred hhHHHHHHHHHHHHHHH
Q 029466 19 VKHFLQICLLLAICFWL 35 (193)
Q Consensus 19 vKh~LQI~lLl~VciWL 35 (193)
.+.+||-++.+||++..
T Consensus 33 ~~~~lqglIq~A~a~~h 49 (62)
T PF03745_consen 33 ERDFLQGLIQLAVALYH 49 (62)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 89999999999999765
No 137
>TIGR02808 short_TIGR02808 conserved hypothetical protein TIGR02808. This very small protein (about 46 amino acids) consists largely of a single predicted membrane-spanning region. It is found in Photobacterium profundum SS9 and in three species of Vibrio, always near periplasmic nitrate reductase genes, but far from the periplasmic nitrate reductase genes in Aeromonas hydrophila ATCC7966.
Probab=23.91 E-value=67 Score=22.09 Aligned_cols=10 Identities=20% Similarity=0.325 Sum_probs=7.3
Q ss_pred HHHHHHHHHH
Q 029466 28 LLAICFWLLH 37 (193)
Q Consensus 28 Ll~VciWLlY 37 (193)
.-++|||||-
T Consensus 28 Va~~si~lLs 37 (42)
T TIGR02808 28 VAVTSILLLN 37 (42)
T ss_pred HHHHHHHHHH
Confidence 4467899984
No 138
>PRK06279 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=23.81 E-value=73 Score=24.44 Aligned_cols=20 Identities=5% Similarity=0.117 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHhhhhh
Q 029466 25 ICLLLAICFWLLHQVRKSYD 44 (193)
Q Consensus 25 I~lLl~VciWLlYQvkhS~d 44 (193)
+..++..|.|++||+=.|.-
T Consensus 3 ~~~~~~~~~~~l~eiv~ani 22 (100)
T PRK06279 3 LLYGIGYLIVLIKAIIEAWI 22 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45677788999999987643
No 139
>PRK11246 hypothetical protein; Provisional
Probab=23.53 E-value=1e+02 Score=27.38 Aligned_cols=29 Identities=17% Similarity=0.277 Sum_probs=20.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 029466 20 KHFLQICLLLAICFWLLHQVRKSYDRKKA 48 (193)
Q Consensus 20 Kh~LQI~lLl~VciWLlYQvkhS~dkk~~ 48 (193)
-..++++||+|.||.+|.=..-+..+|..
T Consensus 162 ~~~~r~Mll~al~iG~lL~~~l~~~~~~~ 190 (218)
T PRK11246 162 TNILRLMLLLALAIGIVLTRTLLQGKRTR 190 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 35789999999999887655555555443
No 140
>TIGR03745 conj_TIGR03745 integrating conjugative element membrane protein, PFL_4702 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in a region flanked by markers of conjugative transfer and/or transposition.
Probab=23.51 E-value=55 Score=26.14 Aligned_cols=12 Identities=42% Similarity=1.007 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHH
Q 029466 26 CLLLAICFWLLH 37 (193)
Q Consensus 26 ~lLl~VciWLlY 37 (193)
++||.+.|||+-
T Consensus 87 viLLv~vIwLlt 98 (104)
T TIGR03745 87 AILLVVIIWLLT 98 (104)
T ss_pred hHHHHHHHHHHH
Confidence 456677899984
No 141
>PLN02966 cytochrome P450 83A1
Probab=23.48 E-value=53 Score=29.98 Aligned_cols=23 Identities=22% Similarity=0.298 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhh
Q 029466 23 LQICLLLAICFWLLHQVRKSYDR 45 (193)
Q Consensus 23 LQI~lLl~VciWLlYQvkhS~dk 45 (193)
+-+|+|++|.+|++|+-......
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~ 28 (502)
T PLN02966 6 IGVVALAAVLLFFLYQKPKTKRY 28 (502)
T ss_pred EeHHHHHHHHHHHHHhccccCCC
Confidence 34788999999999987775443
No 142
>PF00858 ASC: Amiloride-sensitive sodium channel; InterPro: IPR001873 The apical membrane of many tight epithelia contains sodium channels that are primarily characterised by their high affinity to the diuretic blocker amiloride [, , , ]. These channels mediate the first step of active sodium reabsorption essential for the maintenance of body salt and water homeostasis []. In vertebrates, the channels control reabsorption of sodium in kidney, colon, lung and sweat glands; they also play a role in taste perception. Members of the epithelial Na+ channel (ENaC) family fall into four subfamilies, termed alpha, beta, gamma and delta []. The proteins exhibit the same apparent topology, each with two transmembrane (TM) spanning segments, separated by a large extracellular loop. In most ENaC proteins studied to date, the extracellular domains are highly conserved and contain numerous cysteine residues, with flanking C-terminal amphipathic TM regions, postulated to contribute to the formation of the hydrophilic pores of the oligomeric channel protein complexes. It is thought that the well-conserved extracellular domains serve as receptors to control the activities of the channels. Vertebrate ENaC proteins are similar to degenerins of Caenorhabditis elegans []: deg-1, del-1, mec-4, mec-10 and unc-8. These proteins can be mutated to cause neuronal degradation, and are also thought to form sodium channels. Structurally, the proteins that belong to this family consist of about 510 to 920 amino acid residues. They are made of an intracellular N terminus region followed by a transmembrane domain, a large extracellular loop, a second transmembrane segment and a C-terminal intracellular tail [].; GO: 0005272 sodium channel activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 2QTS_B 3S3W_C 3IJ4_A 3S3X_A 3HGC_A 2K2B_A.
Probab=23.33 E-value=1.1e+02 Score=26.73 Aligned_cols=33 Identities=12% Similarity=0.148 Sum_probs=21.4
Q ss_pred cccCcchhHHHHHHHHHHHHHHHHHHHhhhhhh
Q 029466 13 RSKGFKVKHFLQICLLLAICFWLLHQVRKSYDR 45 (193)
Q Consensus 13 RsKG~kvKh~LQI~lLl~VciWLlYQvkhS~dk 45 (193)
+++...+.++|-++++|+.++..+||+.-...+
T Consensus 15 ~~~~~~~~R~~W~~~~~~~~~~~~~~~~~~~~~ 47 (439)
T PF00858_consen 15 DSKTSWFERLFWLLVVVVSFILFIYQIYLLIER 47 (439)
T ss_dssp ------HCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556778888888888888888888776554
No 143
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=23.06 E-value=90 Score=33.92 Aligned_cols=8 Identities=25% Similarity=0.563 Sum_probs=3.7
Q ss_pred cccccccC
Q 029466 65 GIKLGRKD 72 (193)
Q Consensus 65 ~~kLGRKd 72 (193)
.+-.||.-
T Consensus 1394 ~yEIGR~r 1401 (1516)
T KOG1832|consen 1394 MYEIGRRR 1401 (1516)
T ss_pred hhhhcccC
Confidence 34446543
No 144
>PHA03049 IMV membrane protein; Provisional
Probab=22.99 E-value=1.3e+02 Score=22.54 Aligned_cols=21 Identities=24% Similarity=0.648 Sum_probs=11.1
Q ss_pred HHHHHHHH----HHHHHHhhhhhhhhhc
Q 029466 26 CLLLAICF----WLLHQVRKSYDRKKAY 49 (193)
Q Consensus 26 ~lLl~Vci----WLlYQvkhS~dkk~~y 49 (193)
++|++||+ -+||=| |.||+..
T Consensus 5 ~~l~iICVaIi~lIvYgi---Ynkk~~~ 29 (68)
T PHA03049 5 IILVIICVVIIGLIVYGI---YNKKTTT 29 (68)
T ss_pred HHHHHHHHHHHHHHHHHH---Hhccccc
Confidence 44455554 445554 6676644
No 145
>PF15221 LEP503: Lens epithelial cell protein LEP503
Probab=22.92 E-value=1.5e+02 Score=21.73 Aligned_cols=35 Identities=23% Similarity=0.577 Sum_probs=27.1
Q ss_pred ccCCCccccccCcch------------hHHHHHHHHHHHHHHHHHHH
Q 029466 5 KQSSSKNLRSKGFKV------------KHFLQICLLLAICFWLLHQV 39 (193)
Q Consensus 5 rqsssRnqRsKG~kv------------Kh~LQI~lLl~VciWLlYQv 39 (193)
--|++|+-|--|++| -+.|+=|+-+..|.|.|-++
T Consensus 13 Pfs~~~~l~dtglrvpv~KmGtgweG~~~tLKe~aYilLCCWCIKel 59 (61)
T PF15221_consen 13 PFSLGRALRDTGLRVPVIKMGTGWEGLQQTLKEVAYILLCCWCIKEL 59 (61)
T ss_pred CccccccccccccCCceeeecchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788888888886 35677788888999998665
No 146
>PF12955 DUF3844: Domain of unknown function (DUF3844); InterPro: IPR024382 This presumed domain is found in fungal species. It contains 8 largely conserved cysteine residues. This domain is found in proteins thought to be located in the endoplasmic reticulum.
Probab=22.87 E-value=87 Score=24.82 Aligned_cols=18 Identities=28% Similarity=0.351 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 029466 23 LQICLLLAICFWLLHQVR 40 (193)
Q Consensus 23 LQI~lLl~VciWLlYQvk 40 (193)
|-++++|+.+|=|||.|-
T Consensus 76 i~lv~~~~~~I~lL~svG 93 (103)
T PF12955_consen 76 IALVVLVAGAIGLLFSVG 93 (103)
T ss_pred HHHHHHHHHHHHHHHHcC
Confidence 334555566777888874
No 147
>PRK06298 type III secretion system protein; Validated
Probab=22.84 E-value=87 Score=29.09 Aligned_cols=23 Identities=22% Similarity=0.229 Sum_probs=17.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhh
Q 029466 19 VKHFLQICLLLAICFWLLHQVRK 41 (193)
Q Consensus 19 vKh~LQI~lLl~VciWLlYQvkh 41 (193)
+|.+|++++|.+||.|++...-.
T Consensus 141 ~KsllK~~~~~~v~~~~~~~~~~ 163 (356)
T PRK06298 141 LKSILKISGAALILYIVLKNRVP 163 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 67889988887777777765443
No 148
>PF10808 DUF2542: Protein of unknown function (DUF2542) ; InterPro: IPR020155 This entry represents transmembrane proteins with no known function.; GO: 0016021 integral to membrane
Probab=22.83 E-value=25 Score=26.97 Aligned_cols=12 Identities=33% Similarity=0.548 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHH
Q 029466 26 CLLLAICFWLLH 37 (193)
Q Consensus 26 ~lLl~VciWLlY 37 (193)
|+.||++|||||
T Consensus 66 il~~gm~IyllF 77 (79)
T PF10808_consen 66 ILSLGMIIYLLF 77 (79)
T ss_pred HHHHHHhheeEE
Confidence 577889999986
No 149
>TIGR02973 nitrate_rd_NapE periplasmic nitrate reductase, NapE protein. NapE, homologous to TorE (TIGR02972), is a membrane protein of unknown function that is part of the periplasmic nitrate reductase system; it may be part of the enzyme complex. The periplasmic nitrate reductase allows for nitrate respiration in anaerobic conditions.
Probab=22.77 E-value=74 Score=21.75 Aligned_cols=13 Identities=38% Similarity=0.713 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHH
Q 029466 23 LQICLLLAICFWL 35 (193)
Q Consensus 23 LQI~lLl~VciWL 35 (193)
|..+++|+|++|=
T Consensus 5 l~~flfl~~~l~P 17 (42)
T TIGR02973 5 LNTFLFLAAVIWP 17 (42)
T ss_pred HHHHHHHHHHHHH
Confidence 4455666665553
No 150
>PF07265 TAP35_44: Tapetum specific protein TAP35/TAP44; InterPro: IPR009891 This family consists of several plant tapetum specific proteins. Members of this family are found in Arabidopsis thaliana, Brassica napus and Sinapis alba. Members of this family may be involved in sporopollenin formation and/or deposition [].
Probab=22.64 E-value=68 Score=26.12 Aligned_cols=27 Identities=33% Similarity=0.566 Sum_probs=22.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhhhh
Q 029466 18 KVKHFLQICLLLAICFWLLHQVRKSYD 44 (193)
Q Consensus 18 kvKh~LQI~lLl~VciWLlYQvkhS~d 44 (193)
||..+--+||||.|.++|--|.--|..
T Consensus 3 ~iSk~sslcLlll~~ff~sS~pa~slR 29 (119)
T PF07265_consen 3 KISKVSSLCLLLLVVFFLSSQPALSLR 29 (119)
T ss_pred hhHHHHHHHHHHHHHHHHcCchhhhhc
Confidence 577788899999999999988877643
No 151
>PRK10775 cell division protein FtsQ; Provisional
Probab=22.58 E-value=1e+02 Score=27.28 Aligned_cols=29 Identities=24% Similarity=0.359 Sum_probs=17.4
Q ss_pred ccccCcchhHHHHHHHHHHHHHHHHHHHh
Q 029466 12 LRSKGFKVKHFLQICLLLAICFWLLHQVR 40 (193)
Q Consensus 12 qRsKG~kvKh~LQI~lLl~VciWLlYQvk 40 (193)
.|+++-.+--+|-++++|++.+|++|-+.
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 47 (276)
T PRK10775 19 RRSNGTRLAGILFLLMVLGTVLWGGWVVL 47 (276)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555565566666666666666666433
No 152
>PRK07033 hypothetical protein; Provisional
Probab=22.54 E-value=1.2e+02 Score=28.65 Aligned_cols=28 Identities=18% Similarity=0.208 Sum_probs=20.8
Q ss_pred ccCcchhHHHHHHHHHHHHHHHHHHHhh
Q 029466 14 SKGFKVKHFLQICLLLAICFWLLHQVRK 41 (193)
Q Consensus 14 sKG~kvKh~LQI~lLl~VciWLlYQvkh 41 (193)
..-+.+..++-+++||++++|+.|...-
T Consensus 225 ~~~vP~W~~~~~~~~ll~~~y~~~~~~L 252 (427)
T PRK07033 225 RPTVPLWVCVALALLLALLLFIGLRWRL 252 (427)
T ss_pred cccCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677778888888888888876655
No 153
>PF11807 DUF3328: Domain of unknown function (DUF3328); InterPro: IPR021765 This family of proteins are functionally uncharacterised. This family is only found in eukaryotes.
Probab=22.53 E-value=1.8e+02 Score=22.70 Aligned_cols=11 Identities=36% Similarity=0.546 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q 029466 22 FLQICLLLAIC 32 (193)
Q Consensus 22 ~LQI~lLl~Vc 32 (193)
+|-+++||++|
T Consensus 14 ~~~~~~~l~~~ 24 (217)
T PF11807_consen 14 LLLFLLLLILS 24 (217)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 154
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=22.44 E-value=85 Score=25.72 Aligned_cols=29 Identities=14% Similarity=0.392 Sum_probs=16.0
Q ss_pred hHHHHHHHHHHHHHHHHHHH-hhhhhhhhh
Q 029466 20 KHFLQICLLLAICFWLLHQV-RKSYDRKKA 48 (193)
Q Consensus 20 Kh~LQI~lLl~VciWLlYQv-khS~dkk~~ 48 (193)
-+++=+++||+|..|++|.- ..-.++|+.
T Consensus 29 ~~~Inflill~lL~~fl~kPI~~~l~~R~~ 58 (184)
T CHL00019 29 TNLINLSVVLGVLIYFGKGVLSDLLDNRKQ 58 (184)
T ss_pred HHHHHHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence 34455566666666666653 334455543
No 155
>PF09574 DUF2374: Protein of unknown function (Duf2374); InterPro: IPR014175 This very small protein (about 46 amino acids) consists largely of a single predicted membrane-spanning region. It is found in Photobacterium profundum SS9 and in three species of Vibrio, always near periplasmic nitrate reductase genes, but far from the periplasmic nitrate reductase genes in Aeromonas hydrophila ATCC 7966.
Probab=22.34 E-value=75 Score=21.84 Aligned_cols=10 Identities=30% Similarity=0.767 Sum_probs=7.1
Q ss_pred HHHHHHHHHH
Q 029466 28 LLAICFWLLH 37 (193)
Q Consensus 28 Ll~VciWLlY 37 (193)
.-++|||||-
T Consensus 28 Vav~~~~lL~ 37 (42)
T PF09574_consen 28 VAVASIWLLS 37 (42)
T ss_pred HHHHHHHHHH
Confidence 3457899984
No 156
>KOG1397 consensus Ca2+/H+ antiporter VCX1 and related proteins [Inorganic ion transport and metabolism]
Probab=22.28 E-value=78 Score=30.85 Aligned_cols=25 Identities=20% Similarity=0.320 Sum_probs=21.1
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhh
Q 029466 17 FKVKHFLQICLLLAICFWLLHQVRK 41 (193)
Q Consensus 17 ~kvKh~LQI~lLl~VciWLlYQvkh 41 (193)
+-+..+--|++|+|-.+.|+||++-
T Consensus 232 l~lSr~~SivmliaYi~~L~FqL~t 256 (441)
T KOG1397|consen 232 LPLSRGCSIVMLIAYIAYLWFQLKT 256 (441)
T ss_pred eeehhccHHHHHHHHHHHHHHhhhc
Confidence 3455667899999999999999997
No 157
>PF10127 Nuc-transf: Predicted nucleotidyltransferase; InterPro: IPR018775 Proteins in this entry are predicted to catalyse the transfer of nucleotide residues from nucleoside diphosphates or triphosphates into dimer or polymer forms.
Probab=22.24 E-value=53 Score=27.84 Aligned_cols=21 Identities=29% Similarity=0.529 Sum_probs=19.1
Q ss_pred CcchhHHHHHHHHHHHHHHHH
Q 029466 16 GFKVKHFLQICLLLAICFWLL 36 (193)
Q Consensus 16 G~kvKh~LQI~lLl~VciWLl 36 (193)
..++|+.+.++=+|-.|.|++
T Consensus 145 ~~~~K~~~y~lR~lla~~~i~ 165 (247)
T PF10127_consen 145 EVKLKKYFYALRLLLAARWIL 165 (247)
T ss_pred cccHHHHHHHHHHHHHHHHHH
Confidence 458999999999999999997
No 158
>TIGR01655 yxeA_fam conserved hypothetical protein TIGR01655. This model represents a family of small (about 115 amino acids) uncharacterized proteins with N-terminal signal sequences, found exclusively in Gram-positive organisms. Most genomes that have any members of this family have at least two members.
Probab=22.21 E-value=47 Score=25.81 Aligned_cols=15 Identities=13% Similarity=0.208 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHH
Q 029466 23 LQICLLLAICFWLLH 37 (193)
Q Consensus 23 LQI~lLl~VciWLlY 37 (193)
|-+++++++|+|.++
T Consensus 9 i~~ivv~~~~~~~~~ 23 (114)
T TIGR01655 9 LALIVVITIVGIEIS 23 (114)
T ss_pred HHHHHhHHHhhheee
Confidence 345666777777774
No 159
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=22.19 E-value=88 Score=25.46 Aligned_cols=17 Identities=24% Similarity=0.481 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHh
Q 029466 24 QICLLLAICFWLLHQVR 40 (193)
Q Consensus 24 QI~lLl~VciWLlYQvk 40 (193)
-.++.++|.+||||.+-
T Consensus 11 ~~~i~F~ill~ll~~~~ 27 (161)
T COG0711 11 WQLIAFVILLWLLKKFV 27 (161)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 33344445555555543
No 160
>PF10066 DUF2304: Uncharacterized conserved protein (DUF2304); InterPro: IPR019277 This entry represents hypothetical archaeal and bacterial proteins that have no known function.
Probab=22.18 E-value=1.2e+02 Score=23.23 Aligned_cols=21 Identities=24% Similarity=0.390 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhh
Q 029466 25 ICLLLAICFWLLHQVRKSYDR 45 (193)
Q Consensus 25 I~lLl~VciWLlYQvkhS~dk 45 (193)
|++.+++.+|+++.+++++-+
T Consensus 9 i~~~v~~~~~ii~~vr~~~l~ 29 (115)
T PF10066_consen 9 IIIAVLFLLFIIRLVRKRKLR 29 (115)
T ss_pred HHHHHHHHHHHHHHHHHhhcc
Confidence 444556667888888875443
No 161
>PF01307 Plant_vir_prot: Plant viral movement protein; InterPro: IPR001896 This family of membrane/coat proteins are found in a number of different ssRNA plant virus families that include Potexvirus, Hordeivirus and Carlavirus.
Probab=22.14 E-value=1e+02 Score=24.07 Aligned_cols=18 Identities=22% Similarity=0.248 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 029466 23 LQICLLLAICFWLLHQVR 40 (193)
Q Consensus 23 LQI~lLl~VciWLlYQvk 40 (193)
+++++|+.+.+++||-..
T Consensus 73 ~~~~~~vl~L~~~I~~~~ 90 (104)
T PF01307_consen 73 FQPFLLVLLLILLIYLSS 90 (104)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 444444444445554443
No 162
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=21.84 E-value=1.1e+02 Score=23.63 Aligned_cols=28 Identities=25% Similarity=0.363 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhc
Q 029466 22 FLQICLLLAICFWLLHQVRKSYDRKKAY 49 (193)
Q Consensus 22 ~LQI~lLl~VciWLlYQvkhS~dkk~~y 49 (193)
+|=.++.+++.+|+++-+.+...++..|
T Consensus 100 ~l~~l~~l~~~~~~~~~~~~~~~~~~~~ 127 (135)
T PF04246_consen 100 ILGGLLGLALGFLILRLFDRRLKKKSKF 127 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCCC
Confidence 4455667778888888887766665433
No 163
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=21.84 E-value=1.2e+02 Score=25.38 Aligned_cols=24 Identities=21% Similarity=0.198 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhh
Q 029466 22 FLQICLLLAICFWLLHQVRKSYDR 45 (193)
Q Consensus 22 ~LQI~lLl~VciWLlYQvkhS~dk 45 (193)
+|-+++.++|++|+-|-+-....+
T Consensus 3 ii~~i~~~~vG~~~G~~~~~~~~~ 26 (201)
T PF12072_consen 3 IIIAIVALIVGIGIGYLVRKKINR 26 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777777777777554333
No 164
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=21.83 E-value=1.2e+02 Score=27.72 Aligned_cols=13 Identities=0% Similarity=0.043 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHH
Q 029466 25 ICLLLAICFWLLH 37 (193)
Q Consensus 25 I~lLl~VciWLlY 37 (193)
+++++++|+|++|
T Consensus 29 ~~~~~~~~~~~~~ 41 (390)
T PRK15136 29 LLFIIIGVAYGIY 41 (390)
T ss_pred HHHHHHHHHHHHH
Confidence 3333434444444
No 165
>PF12729 4HB_MCP_1: Four helix bundle sensory module for signal transduction; InterPro: IPR024478 This entry represents a four-helix bundle that operates as a ubiquitous sensory module in prokaryotic signal-transduction, which is known as four-helix bundles methyl-accepting chemotaxis protein (4HB_MCP) domain. The 4HB_MCP is always found between two predicted transmembrane helices indicating that it detects only extracellular signals. In many cases the domain is associated with a cytoplasmic HAMP domain suggesting that most proteins carrying the bundle might share the mechanism of transmembrane signalling which is well-characterised in E coli chemoreceptors [].
Probab=21.80 E-value=1.4e+02 Score=21.89 Aligned_cols=19 Identities=26% Similarity=0.189 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHhhhh
Q 029466 25 ICLLLAICFWLLHQVRKSY 43 (193)
Q Consensus 25 I~lLl~VciWLlYQvkhS~ 43 (193)
++++++|++.-+|+++...
T Consensus 16 ~~l~~~~~~~~~~~l~~~~ 34 (181)
T PF12729_consen 16 ILLLLIVGIVGLYSLSQIN 34 (181)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444455555443
No 166
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=21.67 E-value=98 Score=23.15 Aligned_cols=17 Identities=18% Similarity=0.557 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 029466 23 LQICLLLAICFWLLHQV 39 (193)
Q Consensus 23 LQI~lLl~VciWLlYQv 39 (193)
|-||++++..+||+.+-
T Consensus 10 livf~ifVap~WL~lHY 26 (75)
T PF06667_consen 10 LIVFMIFVAPIWLILHY 26 (75)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45677788888887653
No 167
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=21.64 E-value=91 Score=25.27 Aligned_cols=30 Identities=7% Similarity=0.096 Sum_probs=17.1
Q ss_pred hhHHHHHHHHHHHHHHHHHH-Hhhhhhhhhh
Q 029466 19 VKHFLQICLLLAICFWLLHQ-VRKSYDRKKA 48 (193)
Q Consensus 19 vKh~LQI~lLl~VciWLlYQ-vkhS~dkk~~ 48 (193)
+-+++..++|++|+.|++|. |....+++..
T Consensus 22 ~~~~i~Flil~~lL~~~l~kpi~~~l~~R~~ 52 (175)
T PRK14472 22 FWTAVTFVIVLLILKKIAWGPILSALEEREK 52 (175)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 34555666666666666665 3444555543
No 168
>PF03818 MadM: Malonate/sodium symporter MadM subunit; InterPro: IPR018402 The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM.The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=21.52 E-value=1.2e+02 Score=22.19 Aligned_cols=23 Identities=17% Similarity=0.395 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhh
Q 029466 23 LQICLLLAICFWLLHQVRKSYDR 45 (193)
Q Consensus 23 LQI~lLl~VciWLlYQvkhS~dk 45 (193)
+-.|.++|+..|+-|.+..-..+
T Consensus 14 itaFa~vG~~m~~S~~lS~~LT~ 36 (60)
T PF03818_consen 14 ITAFAVVGIIMWVSYWLSKKLTR 36 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC
Confidence 45788999999999999864433
No 169
>PRK13735 conjugal transfer mating pair stabilization protein TraG; Provisional
Probab=21.46 E-value=91 Score=32.90 Aligned_cols=22 Identities=18% Similarity=0.202 Sum_probs=17.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHhh
Q 029466 20 KHFLQICLLLAICFWLLHQVRK 41 (193)
Q Consensus 20 Kh~LQI~lLl~VciWLlYQvkh 41 (193)
..+|+||+||||++|++--++.
T Consensus 30 ~sl~~Ialligvi~~~~~~i~~ 51 (942)
T PRK13735 30 DSIEKIALTLSVLAVAVMWVQR 51 (942)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 5789999999999888765554
No 170
>PF06638 Strabismus: Strabismus protein; InterPro: IPR009539 This family consists of several strabismus (STB) or Van Gogh-like (VANGL) proteins 1 and 2. The exact function of this family is unknown. It is thought, however that STB1 gene and STB2 may be potent tumour suppressor gene candidates [].; GO: 0007275 multicellular organismal development, 0016021 integral to membrane
Probab=21.46 E-value=86 Score=31.07 Aligned_cols=25 Identities=28% Similarity=0.623 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhc
Q 029466 25 ICLLLAICFWLLHQVRKSYDRKKAY 49 (193)
Q Consensus 25 I~lLl~VciWLlYQvkhS~dkk~~y 49 (193)
+++|+.++.||.|=|+--.-+...|
T Consensus 173 Lvfl~~~syWLFY~vrIl~~~~~dy 197 (505)
T PF06638_consen 173 LVFLFLFSYWLFYGVRILDPRESDY 197 (505)
T ss_pred HHHHHHHHHHHHhhheeeechhhhH
Confidence 3344567788888776543443344
No 171
>PF12354 Internalin_N: Bacterial adhesion/invasion protein N terminal; PDB: 2OMT_A 1H6U_A 3RFS_A 3RFJ_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=21.39 E-value=31 Score=24.40 Aligned_cols=21 Identities=24% Similarity=0.468 Sum_probs=0.0
Q ss_pred CcchhHHHHHHHHHHHHHHHH
Q 029466 16 GFKVKHFLQICLLLAICFWLL 36 (193)
Q Consensus 16 G~kvKh~LQI~lLl~VciWLl 36 (193)
-..+|.+|-++|+++|.+|+-
T Consensus 4 ~~~lk~~l~~~lv~~i~~~i~ 24 (57)
T PF12354_consen 4 KNWLKNLLILLLVIIISIWIG 24 (57)
T ss_dssp ---------------------
T ss_pred hHHHHHHHHHHHHHHHHHhhc
Confidence 345666777777777777754
No 172
>PF06638 Strabismus: Strabismus protein; InterPro: IPR009539 This family consists of several strabismus (STB) or Van Gogh-like (VANGL) proteins 1 and 2. The exact function of this family is unknown. It is thought, however that STB1 gene and STB2 may be potent tumour suppressor gene candidates [].; GO: 0007275 multicellular organismal development, 0016021 integral to membrane
Probab=21.38 E-value=71 Score=31.63 Aligned_cols=26 Identities=19% Similarity=0.392 Sum_probs=20.1
Q ss_pred ccccCcchhHHHHHHHHHHHHHHHHHH
Q 029466 12 LRSKGFKVKHFLQICLLLAICFWLLHQ 38 (193)
Q Consensus 12 qRsKG~kvKh~LQI~lLl~VciWLlYQ 38 (193)
--++|+=+--+++++| |+|++|.||-
T Consensus 128 ~~CeGllislafKLli-Llig~WAlf~ 153 (505)
T PF06638_consen 128 AECEGLLISLAFKLLI-LLIGTWALFF 153 (505)
T ss_pred CcccceeHHHHHHHHH-HHHHHHHHhc
Confidence 3468888888888765 4689999984
No 173
>TIGR03368 cellulose_yhjU cellulose synthase operon protein YhjU. This protein was identified by the partial phylogenetic profiling algorithm (PubMed:16930487) as part of the system for cellulose biosynthesis in bacteria, and in fact is found in cellulose biosynthesis gene regions. The protein was designated YhjU in Salmonella enteritidis, where disruption of its gene disrupts cellulose biosynthesis and biofilm formation (PubMed:11929533).
Probab=21.35 E-value=92 Score=30.99 Aligned_cols=24 Identities=13% Similarity=0.022 Sum_probs=18.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhh
Q 029466 18 KVKHFLQICLLLAICFWLLHQVRK 41 (193)
Q Consensus 18 kvKh~LQI~lLl~VciWLlYQvkh 41 (193)
+..|.++-++.|.|+|||+|+=.+
T Consensus 40 ~~l~~~R~~iAipigi~Lly~Ds~ 63 (518)
T TIGR03368 40 RWLRILRQFIAVPAGIALLYRDSW 63 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 345677778888999999997443
No 174
>PF11658 DUF3260: Protein of unknown function (DUF3260); InterPro: IPR017744 This protein was identified by the partial phylogenetic profiling algorithm [] as part of the system for cellulose biosynthesis in bacteria, and in fact is found in cellulose biosynthesis gene regions. The protein was designated YhjU in Salmonella enteritidis, where disruption of its gene disrupts cellulose biosynthesis and biofilm formation [].
Probab=21.34 E-value=86 Score=31.14 Aligned_cols=22 Identities=18% Similarity=0.057 Sum_probs=17.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHh
Q 029466 19 VKHFLQICLLLAICFWLLHQVR 40 (193)
Q Consensus 19 vKh~LQI~lLl~VciWLlYQvk 40 (193)
.=|.|.-++.|.|+|||+|+=.
T Consensus 40 ~l~~~R~~iAipig~aLly~Ds 61 (518)
T PF11658_consen 40 RLRRLRHWIAIPIGIALLYHDS 61 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 3467778889999999999743
No 175
>PF11120 DUF2636: Protein of unknown function (DUF2636); InterPro: IPR019995 Members of this protein family are found invariably together with genes of bacterial cellulose biosynthesis, and are presumed to be involved in the process []. Members average about 63 amino acids in length and are not uncharacterised. The gene has been designated both YhjT and BcsF (bacterial cellulose synthesis F).
Probab=21.25 E-value=1.1e+02 Score=22.33 Aligned_cols=27 Identities=30% Similarity=0.458 Sum_probs=18.4
Q ss_pred hhHHHHHHHHHHHHHH-HHHHHhhhhhh
Q 029466 19 VKHFLQICLLLAICFW-LLHQVRKSYDR 45 (193)
Q Consensus 19 vKh~LQI~lLl~VciW-LlYQvkhS~dk 45 (193)
+-.++||++|.|+++- |-|-+.|+.-.
T Consensus 3 i~DiiQii~l~AlI~~pLGyl~~~~~~r 30 (62)
T PF11120_consen 3 ISDIIQIIILCALIFFPLGYLARRWLPR 30 (62)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHhHH
Confidence 4568999988887654 44666666544
No 176
>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b. This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.
Probab=21.22 E-value=84 Score=24.37 Aligned_cols=29 Identities=14% Similarity=0.377 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHH-Hhhhhhhhhhc
Q 029466 21 HFLQICLLLAICFWLLHQ-VRKSYDRKKAY 49 (193)
Q Consensus 21 h~LQI~lLl~VciWLlYQ-vkhS~dkk~~y 49 (193)
+++.+++|++|+.+++|. |+...+.+..+
T Consensus 1 q~i~Flil~~il~~~~~~pi~~~l~~R~~~ 30 (147)
T TIGR01144 1 QLISFILLVWFCMKYVWPPLAKAIETRQKK 30 (147)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777777777776 45555665543
No 177
>TIGR03064 sortase_srtB sortase, SrtB family. Members of this transpeptidase family are, in most cases, designated sortase B, product of the srtB gene. This protein shows only distant similarity to the sortase A family, for which there may be several members in a single bacterial genome. Typical SrtB substrate motifs include NAKTN, NPKSS, etc, and otherwise resemble the LPXTG sorting signals recognized by sortase A proteins.
Probab=21.15 E-value=1.1e+02 Score=26.82 Aligned_cols=18 Identities=28% Similarity=0.569 Sum_probs=7.0
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 029466 19 VKHFLQICLLLAICFWLLH 37 (193)
Q Consensus 19 vKh~LQI~lLl~VciWLlY 37 (193)
++.+|.| |+|+||++..|
T Consensus 2 i~~ii~i-i~~~vf~~s~~ 19 (232)
T TIGR03064 2 LKKSITL-LFLIVFFYSLY 19 (232)
T ss_pred HHHHHHH-HHHHHHHHHHH
Confidence 3444433 33344444333
No 178
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=21.11 E-value=45 Score=22.50 Aligned_cols=16 Identities=13% Similarity=0.196 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 029466 22 FLQICLLLAICFWLLH 37 (193)
Q Consensus 22 ~LQI~lLl~VciWLlY 37 (193)
+.-|+++|++.+|+.|
T Consensus 21 V~vI~~vl~~~l~~~~ 36 (40)
T PF08693_consen 21 VGVIIIVLGAFLFFWY 36 (40)
T ss_pred hHHHHHHHHHHhheEE
Confidence 3445666666666555
No 179
>PRK11469 hypothetical protein; Provisional
Probab=21.03 E-value=1e+02 Score=25.91 Aligned_cols=21 Identities=14% Similarity=0.251 Sum_probs=17.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 029466 19 VKHFLQICLLLAICFWLLHQV 39 (193)
Q Consensus 19 vKh~LQI~lLl~VciWLlYQv 39 (193)
+-|.+-..+|+.+++|++|+-
T Consensus 68 ~~~~i~~~lL~~lG~~mi~e~ 88 (188)
T PRK11469 68 WNHWIAFVLLIFLGGRMIIEG 88 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 347778889999999999976
No 180
>PLN02687 flavonoid 3'-monooxygenase
Probab=21.00 E-value=76 Score=29.18 Aligned_cols=25 Identities=20% Similarity=0.379 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhh
Q 029466 22 FLQICLLLAICFWLLHQVRKSYDRKK 47 (193)
Q Consensus 22 ~LQI~lLl~VciWLlYQvkhS~dkk~ 47 (193)
+|-..+++||.+|.+| +.+.+.|++
T Consensus 7 ~~~~~~~~~~~~~~~~-~~~~~~~~~ 31 (517)
T PLN02687 7 LLLGTVAVSVLVWCLL-LRRGGSGKH 31 (517)
T ss_pred HHHHHHHHHHHHHHHH-hccccCCCC
Confidence 4445677788899998 555555544
No 181
>PF04973 NMN_transporter: Nicotinamide mononucleotide transporter; InterPro: IPR006419 The PnuC protein of Escherichia coli is membrane protein responsible for nicotinamide mononucleotide transport, subject to regulation by interaction with the NadR (also called NadI) protein (see IPR006417 from INTERPRO). The extreme N- and C-terminal regions are poorly conserved. ; GO: 0006810 transport, 0016020 membrane
Probab=20.99 E-value=1.6e+02 Score=23.87 Aligned_cols=35 Identities=9% Similarity=0.152 Sum_probs=29.4
Q ss_pred ccccccCcchhHHHHHHHHHHHHHHHHHHHhhhhh
Q 029466 10 KNLRSKGFKVKHFLQICLLLAICFWLLHQVRKSYD 44 (193)
Q Consensus 10 RnqRsKG~kvKh~LQI~lLl~VciWLlYQvkhS~d 44 (193)
..-+.|-++.|+.+.++++++|+.++++.+-+...
T Consensus 74 ~~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 108 (181)
T PF04973_consen 74 DEVKVRRLSKKQWILLLIGILIGTAIFGFILKFLT 108 (181)
T ss_pred cccceeeCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34456788899999999999999999999988665
No 182
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=20.89 E-value=1.5e+02 Score=23.70 Aligned_cols=26 Identities=12% Similarity=0.249 Sum_probs=15.9
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHhh
Q 029466 16 GFKVKHFLQICLLLAICFWLLHQVRK 41 (193)
Q Consensus 16 G~kvKh~LQI~lLl~VciWLlYQvkh 41 (193)
||.+-.+|--++-+.|.+|||+-+=.
T Consensus 5 ~~~~~~~~~~~inflil~~lL~~fl~ 30 (164)
T PRK14473 5 GINLGLLIAQLINFLLLIFLLRTFLY 30 (164)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666655445556677777765544
No 183
>PF03083 MtN3_slv: Sugar efflux transporter for intercellular exchange; InterPro: IPR004316 This family includes proteins such as Drosophila saliva [], MtN3 involved in root nodule development [] and proteins involved in activation and expression of recombination activation genes (RAGs) []. Although the molecular function of these proteins is unknown, they are almost certainly transmembrane proteins. This signature maps to transmembrane helices which are found in two copies in most members of the family.; GO: 0016021 integral to membrane
Probab=20.84 E-value=50 Score=23.50 Aligned_cols=22 Identities=9% Similarity=0.283 Sum_probs=16.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHhh
Q 029466 20 KHFLQICLLLAICFWLLHQVRK 41 (193)
Q Consensus 20 Kh~LQI~lLl~VciWLlYQvkh 41 (193)
....-+++++.-++|++|-+--
T Consensus 35 ~~~~~~~~~~~~~~W~~YG~l~ 56 (87)
T PF03083_consen 35 SFPPFLAMFFNCVLWLIYGILI 56 (87)
T ss_pred ceehhHHHhhhccHhhhhhhhc
Confidence 3455678888999999998743
No 184
>PRK10332 hypothetical protein; Provisional
Probab=20.82 E-value=1.8e+02 Score=23.18 Aligned_cols=28 Identities=18% Similarity=0.335 Sum_probs=22.4
Q ss_pred cccCcchhHHHHHHHHHHHHHHHHHHHh
Q 029466 13 RSKGFKVKHFLQICLLLAICFWLLHQVR 40 (193)
Q Consensus 13 RsKG~kvKh~LQI~lLl~VciWLlYQvk 40 (193)
+.+||-+--+|-+++|++|++.-||+.-
T Consensus 7 ~q~GFsL~EvlvAm~i~~i~~~al~~~~ 34 (107)
T PRK10332 7 NQRGFSLPEVLLAMVLMVMIVTALSGYQ 34 (107)
T ss_pred cCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 6679999999998888888877766543
No 185
>PF11345 DUF3147: Protein of unknown function (DUF3147); InterPro: IPR021493 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=20.79 E-value=78 Score=24.63 Aligned_cols=18 Identities=17% Similarity=0.492 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 029466 22 FLQICLLLAICFWLLHQV 39 (193)
Q Consensus 22 ~LQI~lLl~VciWLlYQv 39 (193)
.+...+++|+++|++.=+
T Consensus 84 ~~~~~~~~~~~~W~v~a~ 101 (108)
T PF11345_consen 84 GWLLSIILGLIVWFVVAV 101 (108)
T ss_pred cHHHHHHHHHHHHHHHHH
Confidence 455667777777777543
No 186
>COG3008 PqiB Paraquat-inducible protein B [General function prediction only]
Probab=20.77 E-value=94 Score=31.11 Aligned_cols=20 Identities=30% Similarity=0.371 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHhhhhhh
Q 029466 26 CLLLAICFWLLHQVRKSYDR 45 (193)
Q Consensus 26 ~lLl~VciWLlYQvkhS~dk 45 (193)
++.|+|+.||+||.=+.+.-
T Consensus 28 ivAl~igawL~~~~~~~~G~ 47 (553)
T COG3008 28 IVALLIGAWLLFQHVQDRGP 47 (553)
T ss_pred HHHHHHHHHHHHHHHHhcCC
Confidence 45567888999998876554
No 187
>PRK13109 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=20.76 E-value=1e+02 Score=28.68 Aligned_cols=23 Identities=17% Similarity=0.336 Sum_probs=16.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhh
Q 029466 19 VKHFLQICLLLAICFWLLHQVRK 41 (193)
Q Consensus 19 vKh~LQI~lLl~VciWLlYQvkh 41 (193)
+|.+|+++++.+|+.|++...-+
T Consensus 149 ~KsllK~~~i~~i~~~~~~~~~~ 171 (358)
T PRK13109 149 LKSLFKFLSVSVVVLLLLRSERA 171 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888988877777777665443
No 188
>COG2383 Uncharacterized conserved protein [Function unknown]
Probab=20.76 E-value=90 Score=25.25 Aligned_cols=24 Identities=25% Similarity=0.533 Sum_probs=15.0
Q ss_pred CcchhHHHHHHHHH-HHHHHHHHHH
Q 029466 16 GFKVKHFLQICLLL-AICFWLLHQV 39 (193)
Q Consensus 16 G~kvKh~LQI~lLl-~VciWLlYQv 39 (193)
|.-+|.+++|++|| ||.|-.|+-+
T Consensus 33 GyAlkk~ikvvl~liGvyilsl~~L 57 (109)
T COG2383 33 GYALKKAIKVVLLLIGVYILSLFWL 57 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56789999988764 4544333333
No 189
>TIGR00859 ENaC sodium channel transporter. This model is designed from the vertebrate members of the ENaC family.
Probab=20.75 E-value=1.2e+02 Score=29.78 Aligned_cols=29 Identities=31% Similarity=0.188 Sum_probs=21.0
Q ss_pred ccCcchhHHHHHHHHHHHHHHHHHHHhhh
Q 029466 14 SKGFKVKHFLQICLLLAICFWLLHQVRKS 42 (193)
Q Consensus 14 sKG~kvKh~LQI~lLl~VciWLlYQvkhS 42 (193)
+++.+++++|-++++|+...-++||+.-.
T Consensus 24 ~~~~~~rr~~W~l~~l~s~~~~~~q~~~~ 52 (595)
T TIGR00859 24 SRGGRLKRALWALLTLLALALLLWQCGLL 52 (595)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34467888999888887777777776543
No 190
>PF06624 RAMP4: Ribosome associated membrane protein RAMP4; InterPro: IPR010580 This entry contains Serp1/Ramp4, which has been shown to interacts with target proteins during their translocation into the lumen of the endoplasmic reticulum. It has also been shown to protect unfolded target proteins against degradation during ER stress. It may facilitate glycosylation of target proteins after termination of ER stress and may modulate the use of N-glycosylation sites on target proteins [, ].
Probab=20.75 E-value=50 Score=23.92 Aligned_cols=29 Identities=21% Similarity=0.355 Sum_probs=24.7
Q ss_pred ccCcchhHHHHHHHHHHHHHHHHHHHhhh
Q 029466 14 SKGFKVKHFLQICLLLAICFWLLHQVRKS 42 (193)
Q Consensus 14 sKG~kvKh~LQI~lLl~VciWLlYQvkhS 42 (193)
.+.+-|-.+|-.+++.+||--+|+||=.+
T Consensus 32 ~~k~pVgp~~L~l~iFVV~Gs~ifqiir~ 60 (63)
T PF06624_consen 32 EKKYPVGPWLLGLFIFVVCGSAIFQIIRS 60 (63)
T ss_pred cccCCcCHHHHhhhheeeEcHHHHHHHHH
Confidence 35788899999999999999999998553
No 191
>PF01066 CDP-OH_P_transf: CDP-alcohol phosphatidyltransferase; InterPro: IPR000462 A number of phosphatidyltransferases, which are all involved in phospholipid biosynthesis and that share the property of catalyzing the displacement of CMP from a CDP-alcohol by a second alcohol with formation of a phosphodiester bond and concomitant breaking of a phosphoride anhydride bond share a conserved sequence region [, ]. These enzymes are proteins of 200 to 400 amino acid residues. The conserved region contains three aspartic acid residues and is located in the N-terminal section of the sequences.; GO: 0016780 phosphotransferase activity, for other substituted phosphate groups, 0008654 phospholipid biosynthetic process, 0016020 membrane
Probab=20.55 E-value=1.2e+02 Score=22.05 Aligned_cols=34 Identities=18% Similarity=0.210 Sum_probs=25.9
Q ss_pred cccccc-CcchhHHHHHHHHHHHHHHHHHHHhhhh
Q 029466 10 KNLRSK-GFKVKHFLQICLLLAICFWLLHQVRKSY 43 (193)
Q Consensus 10 RnqRsK-G~kvKh~LQI~lLl~VciWLlYQvkhS~ 43 (193)
++++|+ |...-++.-.+..+++++|++|.+--.+
T Consensus 53 ~~~~S~~G~~lD~~~D~i~~~~~~~~~~~~~~~~~ 87 (101)
T PF01066_consen 53 RNQSSPFGAYLDSVADRISFVALPLWLALALFLIV 87 (101)
T ss_pred cCCCCchHHHHhHHhHHHHHHHHHHHHHHHHHHHH
Confidence 466665 9999999998888888878777665443
No 192
>PF09584 Phageshock_PspD: Phage shock protein PspD (Phageshock_PspD); InterPro: IPR014321 Members of this entry are phage shock protein PspD, they are found in a minority of bacteria that carry the defining genes of the phage shock regulon (pspA, pspB, pspC, and pspF). It is found in Escherichia coli, Yersinia pestis, and closely related species, where it is part of the phage shock operon. It is known to be expressed but its function is unknown.
Probab=20.47 E-value=98 Score=23.05 Aligned_cols=28 Identities=29% Similarity=0.421 Sum_probs=19.4
Q ss_pred cccc-CcchhHHHHHHHHHHHH-------HHHHHHH
Q 029466 12 LRSK-GFKVKHFLQICLLLAIC-------FWLLHQV 39 (193)
Q Consensus 12 qRsK-G~kvKh~LQI~lLl~Vc-------iWLlYQv 39 (193)
|+.| |--+|.+.+++|+++.| -|+|=-|
T Consensus 1 ~k~~~g~~lk~~~K~~l~~aL~ygPAGiAg~~vk~V 36 (66)
T PF09584_consen 1 QKVKPGPALKKAGKFILILALTYGPAGIAGWAVKSV 36 (66)
T ss_pred CCCCchHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 4555 76788888888888655 4666444
No 193
>PRK10856 cytoskeletal protein RodZ; Provisional
Probab=20.44 E-value=95 Score=28.40 Aligned_cols=7 Identities=14% Similarity=0.496 Sum_probs=3.4
Q ss_pred HHHHHHH
Q 029466 32 CFWLLHQ 38 (193)
Q Consensus 32 ciWLlYQ 38 (193)
++|.+++
T Consensus 129 ~~wwwq~ 135 (331)
T PRK10856 129 GAWWWQN 135 (331)
T ss_pred HHHHhhc
Confidence 4565443
No 194
>KOG3916 consensus UDP-Gal:glucosylceramide beta-1,4-galactosyltransferase [Carbohydrate transport and metabolism]
Probab=20.40 E-value=63 Score=30.87 Aligned_cols=30 Identities=23% Similarity=0.566 Sum_probs=20.8
Q ss_pred CcccccCCCccccccCcchhHHHHHHH---HHHHHHHHHH
Q 029466 1 MTILKQSSSKNLRSKGFKVKHFLQICL---LLAICFWLLH 37 (193)
Q Consensus 1 ~~MlrqsssRnqRsKG~kvKh~LQI~l---Ll~VciWLlY 37 (193)
|+|++..=.|. .|-+|-+|+ |+.||+|++|
T Consensus 1 ~~~~~r~l~~~-------~k~lll~~~~~~l~t~~~y~~~ 33 (372)
T KOG3916|consen 1 MRMLRRLLRRA-------CKLLLLLCAGFSLVTVMLYLIY 33 (372)
T ss_pred CcchhHHHHHH-------HHHHHHHHHHHHHHHHHHHhhc
Confidence 56665444332 456777777 8999999997
No 195
>PF00737 PsbH: Photosystem II 10 kDa phosphoprotein; InterPro: IPR001056 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight phosphoprotein PsbH found in PSII. The phosphorylation site of PsbH is located in the N terminus, where reversible phosphorylation is light-dependent and redox-controlled. PsbH is necessary for the photoprotection of PSII, being required for: (1) the rapid degradation of photodamaged D1 core protein to prevent further oxidative damage to the PSII core, and (2) the insertion of newly synthesised D1 protein into the thylakoid membrane []. PsbH may also regulate the transfer of electrons from D2 (Qa) to D1 (Qb) in the reaction core.; GO: 0042301 phosphate ion binding, 0015979 photosynthesis, 0050821 protein stabilization, 0009523 photosystem II, 0016020 membrane; PDB: 3PRR_H 2AXT_h 3BZ2_H 3BZ1_H 4FBY_W 3PRQ_H 3KZI_H 1S5L_h 3A0H_H 3ARC_H ....
Probab=20.40 E-value=1.2e+02 Score=21.75 Aligned_cols=39 Identities=18% Similarity=0.331 Sum_probs=21.6
Q ss_pred cccCCCcccc-ccCcchhHHH-HHHHHHHHHHHHHHHHhhh
Q 029466 4 LKQSSSKNLR-SKGFKVKHFL-QICLLLAICFWLLHQVRKS 42 (193)
Q Consensus 4 lrqsssRnqR-sKG~kvKh~L-QI~lLl~VciWLlYQvkhS 42 (193)
||..+|.+-+ ..|.---.+. -+++|++|++|.|-||-.|
T Consensus 8 LKpLNSeyGkVaPGWGTtplM~~~m~lf~vfl~iiL~IyNs 48 (52)
T PF00737_consen 8 LKPLNSEYGKVAPGWGTTPLMGVFMALFAVFLLIILEIYNS 48 (52)
T ss_dssp CCCCCCSTT--BSTTTTHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cccccccCCCcCCCccchHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4444555433 2343333333 3456788899999888653
No 196
>PF09769 ApoO: Apolipoprotein O; InterPro: IPR019166 Apolipoproteins are proteins that binds to lipids. Members of this family promote cholesterol efflux from macrophage cells. They are present in various lipoprotein complexes, including HDL, LDL and VLDL. Apolipoprotein O is a 198 amino acids protein that contains a 23 amino acids long signal peptide. The apoprotein is secreted by a microsomal triglyceride transfer protein (MTTP)-dependent mechanism, probably as a VLDL-associated protein that is subsequently transferred to HDL. Apolipoprotein O is the first chondroitine sulphate chain containing apolipoprotein [].
Probab=20.37 E-value=78 Score=25.35 Aligned_cols=26 Identities=12% Similarity=-0.140 Sum_probs=22.1
Q ss_pred cCcchhHHHHHHHHHHHHHHHHHHHh
Q 029466 15 KGFKVKHFLQICLLLAICFWLLHQVR 40 (193)
Q Consensus 15 KG~kvKh~LQI~lLl~VciWLlYQvk 40 (193)
||..++.++--.++.++|+|+.|=..
T Consensus 113 ~r~~~~R~~~P~~~g~~~~~~~~P~t 138 (158)
T PF09769_consen 113 RRGIFKRFLYPLAFGGAAASYCYPQT 138 (158)
T ss_pred cCcchhhhHHHHHHHHHHhHhcCcHH
Confidence 46678889999999999999999665
Done!