Query 029466
Match_columns 193
No_of_seqs 45 out of 47
Neff 3.1
Searched_HMMs 29240
Date Mon Mar 25 22:03:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029466.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029466hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2knc_B Integrin beta-3; transm 63.2 7.3 0.00025 27.9 3.6 25 25-49 20-44 (79)
2 1pi7_A VPU protein, U ORF prot 55.4 8.5 0.00029 24.4 2.5 19 22-40 10-28 (36)
3 1rh5_C Secbeta; protein transl 52.2 13 0.00045 25.1 3.2 21 17-37 28-48 (53)
4 1jdm_A Sarcolipin; helix, memb 51.9 9.4 0.00032 23.7 2.2 19 25-43 11-29 (31)
5 1v54_D Cytochrome C oxidase su 48.4 9.6 0.00033 30.6 2.4 39 3-41 63-101 (147)
6 3ixz_B Potassium-transporting 41.1 16 0.00054 31.8 2.8 13 28-40 54-66 (290)
7 1rz2_A Conserved hypothetical 40.5 5.9 0.0002 32.8 0.0 19 23-41 16-34 (254)
8 2qjy_B Cytochrome C1; cytochro 39.1 25 0.00084 30.7 3.7 28 18-45 226-253 (269)
9 2y69_D Cytochrome C oxidase su 38.5 17 0.00057 29.9 2.4 39 3-41 85-123 (169)
10 1v54_I STA, cytochrome C oxida 37.0 35 0.0012 24.5 3.6 36 15-50 10-48 (73)
11 2l6x_A GPR, green-light absorb 34.7 41 0.0014 27.9 4.3 33 9-41 155-187 (243)
12 3cx5_D Cytochrome C1, heme pro 34.6 32 0.0011 29.5 3.7 28 18-45 205-232 (248)
13 2lx0_A Membrane fusion protein 33.5 40 0.0014 20.8 3.0 15 23-37 13-27 (32)
14 2wwb_C SEC61BETA, protein tran 33.4 19 0.00064 27.3 1.8 24 14-37 63-88 (96)
15 3lgb_A DNA primase large subun 24.7 50 0.0017 27.4 3.1 24 22-45 40-87 (194)
16 2ww9_C Protein transport prote 23.9 43 0.0015 24.9 2.3 25 15-39 55-81 (87)
17 2w0c_T Protein P6, protein VI; 22.9 63 0.0022 25.0 3.1 18 23-41 9-26 (127)
18 3bo0_B Preprotein translocase 22.5 31 0.0011 23.0 1.2 13 26-38 46-58 (65)
19 3ddl_A Xanthorhodopsin; carote 22.2 61 0.0021 27.5 3.2 28 14-41 180-207 (273)
20 2ict_A Antitoxin HIGA; helix-t 21.7 33 0.0011 22.9 1.2 27 16-42 47-75 (94)
No 1
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=63.25 E-value=7.3 Score=27.95 Aligned_cols=25 Identities=16% Similarity=0.356 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhc
Q 029466 25 ICLLLAICFWLLHQVRKSYDRKKAY 49 (193)
Q Consensus 25 I~lLl~VciWLlYQvkhS~dkk~~y 49 (193)
.+||||+++||++-+-.....|++|
T Consensus 20 gilliGllllliwk~~~~i~DrrE~ 44 (79)
T 2knc_B 20 AILLIGLAALLIWKLLITIHDRKEF 44 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666666544444444454
No 2
>1pi7_A VPU protein, U ORF protein; alpha helix, viral protein; NMR {Human immunodeficiency virus 1} SCOP: j.35.1.1 PDB: 1pi8_A 1pje_A 2gof_A 2goh_A 2jpx_A
Probab=55.43 E-value=8.5 Score=24.42 Aligned_cols=19 Identities=21% Similarity=0.583 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 029466 22 FLQICLLLAICFWLLHQVR 40 (193)
Q Consensus 22 ~LQI~lLl~VciWLlYQvk 40 (193)
+|-++++++|.+|.+--+.
T Consensus 10 alivalIiaIVVWtiv~ie 28 (36)
T 1pi7_A 10 ALVVAIIIAIVVWSIVIIE 28 (36)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5778899999999875443
No 3
>1rh5_C Secbeta; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.29.1 PDB: 1rhz_C 2yxq_C 2yxr_C 3kcr_C 3dkn_C 3bo1_C 3bo0_C
Probab=52.24 E-value=13 Score=25.13 Aligned_cols=21 Identities=19% Similarity=0.284 Sum_probs=18.0
Q ss_pred cchhHHHHHHHHHHHHHHHHH
Q 029466 17 FKVKHFLQICLLLAICFWLLH 37 (193)
Q Consensus 17 ~kvKh~LQI~lLl~VciWLlY 37 (193)
+.+|.+|-+++++++++|+|.
T Consensus 28 i~P~~Vl~~si~~i~~V~~L~ 48 (53)
T 1rh5_C 28 VKPEHVIGVTVAFVIIEAILT 48 (53)
T ss_dssp CCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCeehhhhHHHHHHHHHHHH
Confidence 346889999999999999985
No 4
>1jdm_A Sarcolipin; helix, membrane protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=51.89 E-value=9.4 Score=23.73 Aligned_cols=19 Identities=21% Similarity=0.303 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHhhhh
Q 029466 25 ICLLLAICFWLLHQVRKSY 43 (193)
Q Consensus 25 I~lLl~VciWLlYQvkhS~ 43 (193)
-|.|+.||+-|+|-+-+||
T Consensus 11 NFt~vLI~vlLi~llVrsy 29 (31)
T 1jdm_A 11 NFTIVLITVILMWLLVRSY 29 (31)
T ss_dssp HHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 3555666777777676665
No 5
>1v54_D Cytochrome C oxidase subunit IV isoform 1; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.1.1 PDB: 1oco_D* 1occ_D* 1ocz_D* 1ocr_D* 1v55_D* 2dyr_D* 2dys_D* 2eij_D* 2eik_D* 2eil_D* 2eim_D* 2ein_D* 2occ_D* 2ybb_O* 2zxw_D* 3abk_D* 3abl_D* 3abm_D* 3ag1_D* 3ag2_D* ...
Probab=48.42 E-value=9.6 Score=30.59 Aligned_cols=39 Identities=15% Similarity=0.009 Sum_probs=27.7
Q ss_pred ccccCCCccccccCcchhHHHHHHHHHHHHHHHHHHHhh
Q 029466 3 ILKQSSSKNLRSKGFKVKHFLQICLLLAICFWLLHQVRK 41 (193)
Q Consensus 3 MlrqsssRnqRsKG~kvKh~LQI~lLl~VciWLlYQvkh 41 (193)
-|.|+..|-+++.|--.+-+.-++++||+++|+++-++.
T Consensus 63 sF~~t~ae~~~p~gewK~v~g~v~~~i~~s~~~f~~~r~ 101 (147)
T 1v54_D 63 KFKESFAEMNRSTNEWKTVVGAAMFFIGFTALLLIWEKH 101 (147)
T ss_dssp HCSSCHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777788888884444555567779999999876654
No 6
>3ixz_B Potassium-transporting ATPase subunit beta; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2yn9_B 2xzb_B
Probab=41.12 E-value=16 Score=31.82 Aligned_cols=13 Identities=23% Similarity=0.774 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHh
Q 029466 28 LLAICFWLLHQVR 40 (193)
Q Consensus 28 Ll~VciWLlYQvk 40 (193)
|.++|+|+++|.=
T Consensus 54 lFa~~m~v~l~Tl 66 (290)
T 3ixz_B 54 IFALCIYVLMRTI 66 (290)
T ss_pred HHHHHHHHHHHhC
Confidence 7889999999853
No 7
>1rz2_A Conserved hypothetical protein BA4783; sortase B protein, B. anthracis, structural genomics, PSI, P structure initiative; 1.60A {Bacillus anthracis} SCOP: b.100.1.1 PDB: 2oqz_A* 2oqw_A*
Probab=40.47 E-value=5.9 Score=32.81 Aligned_cols=19 Identities=11% Similarity=0.336 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 029466 23 LQICLLLAICFWLLHQVRK 41 (193)
Q Consensus 23 LQI~lLl~VciWLlYQvkh 41 (193)
|-|+++|+|+++.+|||-+
T Consensus 16 lli~i~l~~~l~~~~~l~~ 34 (254)
T 1rz2_A 16 ILTVVFLGTFFYSVYELGD 34 (254)
T ss_dssp -------------------
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555543
No 8
>2qjy_B Cytochrome C1; cytochrome B, 8 TM helixces cytochrome C1, 1 C-TERM TM helix 1 N-TERM TM helix; HET: BGL HEM SMA LOP UQ2; 2.40A {Rhodobacter sphaeroides} PDB: 2fyn_B* 2qjp_B* 2qjk_B*
Probab=39.13 E-value=25 Score=30.69 Aligned_cols=28 Identities=14% Similarity=0.062 Sum_probs=22.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhhhhh
Q 029466 18 KVKHFLQICLLLAICFWLLHQVRKSYDR 45 (193)
Q Consensus 18 kvKh~LQI~lLl~VciWLlYQvkhS~dk 45 (193)
|-+-++.++++|+|++.|+|-+|.-+=+
T Consensus 226 Rk~lG~~Vl~fL~il~~l~y~~kr~~W~ 253 (269)
T 2qjy_B 226 RKQAGFTAVMFLTVLSVLLYLTNKRLWA 253 (269)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4567889999999999999999875433
No 9
>2y69_D Cytochrome C oxidase subunit 4 isoform 1; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=38.49 E-value=17 Score=29.87 Aligned_cols=39 Identities=15% Similarity=0.009 Sum_probs=27.6
Q ss_pred ccccCCCccccccCcchhHHHHHHHHHHHHHHHHHHHhh
Q 029466 3 ILKQSSSKNLRSKGFKVKHFLQICLLLAICFWLLHQVRK 41 (193)
Q Consensus 3 MlrqsssRnqRsKG~kvKh~LQI~lLl~VciWLlYQvkh 41 (193)
-|.|+..|-+++.|--.+-+..++++||+++|+++-++.
T Consensus 85 SF~qt~aE~~~ptgEWK~V~ggv~~~i~~s~~~f~~~r~ 123 (169)
T 2y69_D 85 KFKESFAEMNRSTNEWKTVVGAAMFFIGFTALLLIWEKH 123 (169)
T ss_dssp HCSSCHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777888884444555577779999999886654
No 10
>1v54_I STA, cytochrome C oxidase polypeptide VIC; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.3.1 PDB: 1oco_I* 1occ_I* 1ocz_I* 1ocr_I* 1v55_I* 2dyr_I* 2dys_I* 2eij_I* 2eik_I* 2eil_I* 2eim_I* 2ein_I* 2occ_I* 2ybb_T* 2zxw_I* 3abk_I* 3abl_I* 3abm_I* 3ag1_I* 3ag2_I* ...
Probab=36.99 E-value=35 Score=24.45 Aligned_cols=36 Identities=19% Similarity=0.362 Sum_probs=20.1
Q ss_pred cCcchh---HHHHHHHHHHHHHHHHHHHhhhhhhhhhcc
Q 029466 15 KGFKVK---HFLQICLLLAICFWLLHQVRKSYDRKKAYE 50 (193)
Q Consensus 15 KG~kvK---h~LQI~lLl~VciWLlYQvkhS~dkk~~y~ 50 (193)
+|+=.| .-|-+++.|++++-++|-+-+.--+|++|.
T Consensus 10 rgLl~~~lr~~i~~a~~lsl~~~~~~k~~v~~pRK~aYa 48 (73)
T 1v54_I 10 RGLLARRLRFHIVGAFMVSLGFATFYKFAVAEKRKKAYA 48 (73)
T ss_dssp BSHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 455433 344455555555556666666555666664
No 11
>2l6x_A GPR, green-light absorbing proteorhodopsin; membrane protein structure, cell-free expre proton transport; HET: LYR; NMR {Uncultured marine gamma PROTEOBACTERIUEBAC31A08}
Probab=34.72 E-value=41 Score=27.93 Aligned_cols=33 Identities=12% Similarity=0.144 Sum_probs=26.5
Q ss_pred CccccccCcchhHHHHHHHHHHHHHHHHHHHhh
Q 029466 9 SKNLRSKGFKVKHFLQICLLLAICFWLLHQVRK 41 (193)
Q Consensus 9 sRnqRsKG~kvKh~LQI~lLl~VciWLlYQvkh 41 (193)
+++-++++-.++.++..+.++.+++|++|=|--
T Consensus 155 ~~~a~~~~~~v~~~f~~l~~~~~v~W~iYPi~w 187 (243)
T 2l6x_A 155 KSACNTASPAVQSAYNTMMYIIIFGWAIYPVGY 187 (243)
T ss_dssp TTSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666799999999999999999998755
No 12
>3cx5_D Cytochrome C1, heme protein, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: a.3.1.3 f.23.11.1 PDB: 1kyo_D* 2ibz_D* 3cxh_D* 1kb9_D* 1p84_D* 1ezv_D*
Probab=34.64 E-value=32 Score=29.50 Aligned_cols=28 Identities=18% Similarity=0.108 Sum_probs=22.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhhhhh
Q 029466 18 KVKHFLQICLLLAICFWLLHQVRKSYDR 45 (193)
Q Consensus 18 kvKh~LQI~lLl~VciWLlYQvkhS~dk 45 (193)
|-+-++.+++.|+|++-|+|-+|.-+=+
T Consensus 205 Rk~~G~~vl~fL~il~~l~y~~kr~~W~ 232 (248)
T 3cx5_D 205 RKRLGLKTVIILSSLYLLSIWVKKFKWA 232 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4566888999999999999999875544
No 13
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=33.46 E-value=40 Score=20.83 Aligned_cols=15 Identities=33% Similarity=0.817 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHH
Q 029466 23 LQICLLLAICFWLLH 37 (193)
Q Consensus 23 LQI~lLl~VciWLlY 37 (193)
.-+..+||.++||.-
T Consensus 13 valltflafgfwlfk 27 (32)
T 2lx0_A 13 VALLTFLAFGFWLFK 27 (32)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 345667899999974
No 14
>2wwb_C SEC61BETA, protein transport protein SEC61 subunit beta; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=33.38 E-value=19 Score=27.28 Aligned_cols=24 Identities=38% Similarity=0.614 Sum_probs=19.6
Q ss_pred ccCcch--hHHHHHHHHHHHHHHHHH
Q 029466 14 SKGFKV--KHFLQICLLLAICFWLLH 37 (193)
Q Consensus 14 sKG~kv--Kh~LQI~lLl~VciWLlY 37 (193)
+.|||| +.+|-++|+++++||+|.
T Consensus 63 s~GlKV~P~~VLv~sl~Fi~~Vi~Lh 88 (96)
T 2wwb_C 63 SPGLKVGPVPVLVMSLLFIASVFMLH 88 (96)
T ss_dssp SCCCCCSSCSHHHHHHHHHHHHHHHS
T ss_pred CCceEECCEEehhhHHHHHHHHHHHH
Confidence 346665 789999999999999985
No 15
>3lgb_A DNA primase large subunit; Fe-S cluster, DNA-binding, DNA-directed RNA POL iron, iron-sulfur, metal-binding, nucleotidyltransferase; HET: DNA MSE EPE; 1.54A {Saccharomyces cerevisiae}
Probab=24.72 E-value=50 Score=27.44 Aligned_cols=24 Identities=33% Similarity=0.557 Sum_probs=18.6
Q ss_pred HHHHHHHH---------HHHHHH---------------HHHHhhhhhh
Q 029466 22 FLQICLLL---------AICFWL---------------LHQVRKSYDR 45 (193)
Q Consensus 22 ~LQI~lLl---------~VciWL---------------lYQvkhS~dk 45 (193)
-||++|.| +|-||- .|||.|.|++
T Consensus 40 R~ql~lFLkgiGls~ee~l~f~r~~F~k~~~d~F~K~y~Y~IrH~yG~ 87 (194)
T 3lgb_A 40 RQQLSLFLKGIGLSADEALKFWSEAFTNMTMEKFNKEYRYSFRHNYGL 87 (194)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHSTTSCHHHHHHHTHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHcccCChhhhccceeeeeeeecCC
Confidence 47777766 577886 6999999985
No 16
>2ww9_C Protein transport protein SEB2; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_C
Probab=23.93 E-value=43 Score=24.87 Aligned_cols=25 Identities=24% Similarity=0.372 Sum_probs=15.4
Q ss_pred cCcch--hHHHHHHHHHHHHHHHHHHH
Q 029466 15 KGFKV--KHFLQICLLLAICFWLLHQV 39 (193)
Q Consensus 15 KG~kv--Kh~LQI~lLl~VciWLlYQv 39 (193)
+|||| +.||-|+|.+.++||||.=+
T Consensus 55 ~GlKV~P~~VLv~sl~FIa~VilLHI~ 81 (87)
T 2ww9_C 55 NGFRVDSLVVLFLSVGFIFSVIALHLL 81 (87)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHHC---
T ss_pred CceEEcCeeehhhHHHHHHHHHHHHHh
Confidence 46665 67788888888888888644
No 17
>2w0c_T Protein P6, protein VI; virus, member of PRD1-adeno viral lineage, membrane-containing bacteriophage, virus virion, membrane; 7.00A {Pseudoalteromonas phage PM2}
Probab=22.95 E-value=63 Score=25.00 Aligned_cols=18 Identities=17% Similarity=0.294 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 029466 23 LQICLLLAICFWLLHQVRK 41 (193)
Q Consensus 23 LQI~lLl~VciWLlYQvkh 41 (193)
+-.+|..||++|. ||--.
T Consensus 9 fvwilaagvgvwf-yqkad 26 (127)
T 2w0c_T 9 FVWILAAGVGVWF-YQKAD 26 (127)
T ss_dssp HHHHHHHHHHHHH-HHHHH
T ss_pred hheeeecccEEEE-eeecc
Confidence 3456788999995 77544
No 18
>3bo0_B Preprotein translocase SECE subunit; ribosome-SECY complex, protein translocation; 9.60A {Escherichia coli} PDB: 3bo1_B 3kcr_B
Probab=22.54 E-value=31 Score=22.98 Aligned_cols=13 Identities=0% Similarity=-0.067 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHH
Q 029466 26 CLLLAICFWLLHQ 38 (193)
Q Consensus 26 ~lLl~VciWLlYQ 38 (193)
+.++|+.|||+.+
T Consensus 46 v~~i~~~i~lid~ 58 (65)
T 3bo0_B 46 LGIIGYIIHVPAT 58 (65)
T ss_dssp HHHHHHHHTTTTH
T ss_pred HHHHHHHHHHHHH
Confidence 3444455555443
No 19
>3ddl_A Xanthorhodopsin; carotenoid, ION pump, light-harvesting, antenna, retinal, transport protein; HET: SXN UNL RET PX4 PCW; 1.90A {Salinibacter ruber}
Probab=22.17 E-value=61 Score=27.50 Aligned_cols=28 Identities=18% Similarity=0.275 Sum_probs=23.3
Q ss_pred ccCcchhHHHHHHHHHHHHHHHHHHHhh
Q 029466 14 SKGFKVKHFLQICLLLAICFWLLHQVRK 41 (193)
Q Consensus 14 sKG~kvKh~LQI~lLl~VciWLlYQvkh 41 (193)
+++-.++.++..+.++.++.|++|=|--
T Consensus 180 ~~~~~v~~~~~~l~~~v~v~W~iYPI~w 207 (273)
T 3ddl_A 180 RQSSRVSTLLGNARLLLLATWGFYPIAY 207 (273)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3445688899999999999999998866
No 20
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=21.75 E-value=33 Score=22.92 Aligned_cols=27 Identities=15% Similarity=0.301 Sum_probs=21.0
Q ss_pred CcchhHHHHHHHHHHHH--HHHHHHHhhh
Q 029466 16 GFKVKHFLQICLLLAIC--FWLLHQVRKS 42 (193)
Q Consensus 16 G~kvKh~LQI~lLl~Vc--iWLlYQvkhS 42 (193)
.+.+..+++||-+|+|. +||.+|....
T Consensus 47 ~~~~~~~~~i~~~l~v~~~~~l~~~~~~~ 75 (94)
T 2ict_A 47 ALTPEMAIKLSVVIGSSPQMWLNLQNAWS 75 (94)
T ss_dssp CCCHHHHHHHHHHTCSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 46678899999998864 4999887653
Done!