Query 029466
Match_columns 193
No_of_seqs 45 out of 47
Neff 3.1
Searched_HMMs 13730
Date Mon Mar 25 22:04:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029466.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/029466hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1v54d_ f.23.1.1 (D:) Mitochon 55.0 3.1 0.00022 31.5 2.4 38 4-41 61-98 (144)
2 d1ppjd2 f.23.11.1 (D:196-241) 35.6 20 0.0014 22.1 3.6 22 20-41 8-29 (46)
3 d1uaza_ f.13.1.1 (A:) Archaerh 29.1 12 0.00091 29.0 2.2 28 14-41 168-195 (236)
4 d1fftc_ f.25.1.1 (C:) Cytochro 26.6 37 0.0027 24.6 4.5 35 3-41 67-101 (185)
5 d2bmfa1 c.37.1.14 (A:483-618) 25.9 12 0.00085 28.1 1.4 42 12-53 41-86 (136)
6 d3cx5d2 f.23.11.1 (D:261-307) 25.1 38 0.0028 21.0 3.6 22 20-41 8-29 (47)
7 d1v54i_ f.23.3.1 (I:) Mitochon 23.5 38 0.0028 22.8 3.6 34 18-51 16-49 (73)
8 d1m0ka_ f.13.1.1 (A:) Bacterio 18.4 43 0.0032 25.5 3.4 28 14-41 158-185 (227)
9 d2axtd1 f.26.1.1 (D:13-352) Ph 17.5 46 0.0033 28.0 3.6 25 21-45 100-124 (340)
10 d2axta1 f.26.1.1 (A:10-344) Ph 17.0 48 0.0035 27.9 3.6 25 21-45 104-128 (335)
No 1
>d1v54d_ f.23.1.1 (D:) Mitochondrial cytochrome c oxidase subunit IV {Cow (Bos taurus) [TaxId: 9913]}
Probab=54.99 E-value=3.1 Score=31.50 Aligned_cols=38 Identities=16% Similarity=0.028 Sum_probs=29.1
Q ss_pred cccCCCccccccCcchhHHHHHHHHHHHHHHHHHHHhh
Q 029466 4 LKQSSSKNLRSKGFKVKHFLQICLLLAICFWLLHQVRK 41 (193)
Q Consensus 4 lrqsssRnqRsKG~kvKh~LQI~lLl~VciWLlYQvkh 41 (193)
|.++..|-+++.|---+-+..++++|||++|+++-+++
T Consensus 61 F~~t~ae~~~p~gewK~v~g~~~~~i~~s~~i~~~~r~ 98 (144)
T d1v54d_ 61 FKESFAEMNRSTNEWKTVVGAAMFFIGFTALLLIWEKH 98 (144)
T ss_dssp CSSCHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666777778887666666788889999999887765
No 2
>d1ppjd2 f.23.11.1 (D:196-241) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Cow (Bos taurus) [TaxId: 9913]}
Probab=35.60 E-value=20 Score=22.09 Aligned_cols=22 Identities=14% Similarity=0.327 Sum_probs=12.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHhh
Q 029466 20 KHFLQICLLLAICFWLLHQVRK 41 (193)
Q Consensus 20 Kh~LQI~lLl~VciWLlYQvkh 41 (193)
+-+|+++++|.+++=|+|=+|+
T Consensus 8 ~mG~Kv~~~l~~l~~l~yy~KR 29 (46)
T d1ppjd2 8 RMGLKMLLMMGLLLPLVYAMKR 29 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666655555554
No 3
>d1uaza_ f.13.1.1 (A:) Archaerhodopsin-1 {Archaeon Halobacterium sp. [TaxId: 2243]}
Probab=29.12 E-value=12 Score=28.96 Aligned_cols=28 Identities=14% Similarity=0.254 Sum_probs=22.5
Q ss_pred ccCcchhHHHHHHHHHHHHHHHHHHHhh
Q 029466 14 SKGFKVKHFLQICLLLAICFWLLHQVRK 41 (193)
Q Consensus 14 sKG~kvKh~LQI~lLl~VciWLlYQvkh 41 (193)
+++-.++.++..+.++.+++|++|=|--
T Consensus 168 ~~~~~~~~~~~~l~~~~~v~W~iYPi~~ 195 (236)
T d1uaza_ 168 ERGPEVASTFNTLTALVLVLWTAYPILW 195 (236)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556788888888888889999998854
No 4
>d1fftc_ f.25.1.1 (C:) Cytochrome O ubiquinol oxidase, subunit III {Escherichia coli [TaxId: 562]}
Probab=26.62 E-value=37 Score=24.56 Aligned_cols=35 Identities=20% Similarity=0.281 Sum_probs=23.8
Q ss_pred ccccCCCccccccCcchhHHHHHHHHHHHHHHHHHHHhh
Q 029466 3 ILKQSSSKNLRSKGFKVKHFLQICLLLAICFWLLHQVRK 41 (193)
Q Consensus 3 MlrqsssRnqRsKG~kvKh~LQI~lLl~VciWLlYQvkh 41 (193)
|.++.-.|+++. +++..|-+++++|+|+ |+-|+-.
T Consensus 67 ~a~~~~~~~~~~---~~~~~L~~t~~lG~~F-l~~q~~e 101 (185)
T d1fftc_ 67 MAAIAMYKNNKS---QVISWLALTWLFGAGF-IGMEIYE 101 (185)
T ss_dssp SGGGTTTTCCGG---GGTHHHHHHHHHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHH-HHHHHHh
Confidence 344444444443 5778899999999977 7777765
No 5
>d2bmfa1 c.37.1.14 (A:483-618) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}
Probab=25.92 E-value=12 Score=28.13 Aligned_cols=42 Identities=21% Similarity=0.322 Sum_probs=29.5
Q ss_pred ccccCcchhHHHHHHHHHHHHHHHHHHHhhh----hhhhhhcccCC
Q 029466 12 LRSKGFKVKHFLQICLLLAICFWLLHQVRKS----YDRKKAYEEGT 53 (193)
Q Consensus 12 qRsKG~kvKh~LQI~lLl~VciWLlYQvkhS----~dkk~~y~~~~ 53 (193)
=|-++=+-|+++.++----+-+||.|||-.. .|.+=.|....
T Consensus 41 fRL~~E~RK~F~~Ll~~~D~p~WLAw~VA~~g~~~~DR~W~f~Gp~ 86 (136)
T d2bmfa1 41 YRLRGEARKTFVDLMRRGDLPVWLAYRVAAEGINYADRRWCFDGVK 86 (136)
T ss_dssp TCCCHHHHHHHHHHHHTSCCCHHHHHHHHHTTCCTTCGGGGTCSCG
T ss_pred eecChhhHHHHHHHHhhcCCchhhhHHHHHcCCCccccceeccCCC
Confidence 3556667788888776666779999999764 45555555433
No 6
>d3cx5d2 f.23.11.1 (D:261-307) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=25.09 E-value=38 Score=20.98 Aligned_cols=22 Identities=23% Similarity=0.283 Sum_probs=12.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhh
Q 029466 20 KHFLQICLLLAICFWLLHQVRK 41 (193)
Q Consensus 20 Kh~LQI~lLl~VciWLlYQvkh 41 (193)
+-+|++++++++++=+.|=+|+
T Consensus 8 ~mg~K~~~i~s~l~~~~~y~KR 29 (47)
T d3cx5d2 8 RLGLKTVIILSSLYLLSIWVKK 29 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555554
No 7
>d1v54i_ f.23.3.1 (I:) Mitochondrial cytochrome c oxidase subunit VIc {Cow (Bos taurus) [TaxId: 9913]}
Probab=23.52 E-value=38 Score=22.84 Aligned_cols=34 Identities=18% Similarity=0.363 Sum_probs=24.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhhhhhhhhccc
Q 029466 18 KVKHFLQICLLLAICFWLLHQVRKSYDRKKAYEE 51 (193)
Q Consensus 18 kvKh~LQI~lLl~VciWLlYQvkhS~dkk~~y~~ 51 (193)
++|-=|-++++|.+++-.+|.+--..-+|++|.+
T Consensus 16 ~lk~hl~~a~~lsl~~a~~~Kf~v~eprKkaYad 49 (73)
T d1v54i_ 16 RLRFHIVGAFMVSLGFATFYKFAVAEKRKKAYAD 49 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccHhHHHHHH
Confidence 4444566677777777788888777778888754
No 8
>d1m0ka_ f.13.1.1 (A:) Bacteriorhodopsin {Archaeon Halobacterium salinarum [TaxId: 2242]}
Probab=18.40 E-value=43 Score=25.50 Aligned_cols=28 Identities=14% Similarity=0.140 Sum_probs=23.4
Q ss_pred ccCcchhHHHHHHHHHHHHHHHHHHHhh
Q 029466 14 SKGFKVKHFLQICLLLAICFWLLHQVRK 41 (193)
Q Consensus 14 sKG~kvKh~LQI~lLl~VciWLlYQvkh 41 (193)
+++-.++.++.++.++.+++|++|=|-.
T Consensus 158 ~~~~~~~~~~~~l~~~~~v~W~iYPI~~ 185 (227)
T d1m0ka_ 158 SMRPEVASTFKVLRNVTVVLWSAYPVVW 185 (227)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556788889999999999999999865
No 9
>d2axtd1 f.26.1.1 (D:13-352) Photosystem II reaction center d2 protein PsbD2 {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=17.46 E-value=46 Score=28.01 Aligned_cols=25 Identities=12% Similarity=0.130 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhh
Q 029466 21 HFLQICLLLAICFWLLHQVRKSYDR 45 (193)
Q Consensus 21 h~LQI~lLl~VciWLlYQvkhS~dk 45 (193)
++.-+|+|++|+.|++=|+..|+.=
T Consensus 100 ~ii~~~~~~~v~~w~~R~~e~a~~L 124 (340)
T d2axtd1 100 TFIALHGAFGLIGFMLRQFEIARLV 124 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556789999999999999987654
No 10
>d2axta1 f.26.1.1 (A:10-344) Photosystem Q(B) protein 1, PsbA1 {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=17.03 E-value=48 Score=27.87 Aligned_cols=25 Identities=20% Similarity=0.292 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhh
Q 029466 21 HFLQICLLLAICFWLLHQVRKSYDR 45 (193)
Q Consensus 21 h~LQI~lLl~VciWLlYQvkhS~dk 45 (193)
++.-+|+|++||.|++=|...|+.=
T Consensus 104 ~ii~~~~l~~v~~w~~R~~e~a~~L 128 (335)
T d2axta1 104 QLIIFHFLLGASCYMGRQWELSYRL 128 (335)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556789999999999999887654
Done!