BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>029467
MSQGDSKKLEGDAPSASSSSDGRKERIIVPAILAGLVGGVSGLLSKHRKVHGLANISATY
ATNLSIVTACYCGAREFVRVSRKTGPDDLVNSAIAGFGSGALLGRLQGGQRGALRYSVIF
AVVGTTVDYATLRLAPIIRNFRESHKDGDWLKLPEWSPIQVLDEEALAEKKAREQKLYAQ
TQQALGKLRKEES

High Scoring Gene Products

Symbol, full name Information P value
AT3G25120 protein from Arabidopsis thaliana 4.2e-31

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  029467
        (193 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2090300 - symbol:AT3G25120 "AT3G25120" species...   342  4.2e-31   1


>TAIR|locus:2090300 [details] [associations]
            symbol:AT3G25120 "AT3G25120" species:3702 "Arabidopsis
            thaliana" [GO:0005744 "mitochondrial inner membrane presequence
            translocase complex" evidence=ISS] [GO:0009507 "chloroplast"
            evidence=ISM] [GO:0015031 "protein transport" evidence=ISS]
            [GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane
            transporter activity" evidence=ISS] InterPro:IPR003397 Pfam:PF02466
            GO:GO:0016021 EMBL:CP002686 EMBL:AB026647 EMBL:DQ405272
            EMBL:BT044607 IPI:IPI00533354 RefSeq:NP_566759.1 UniGene:At.28175
            PRIDE:Q9LSG5 EnsemblPlants:AT3G25120.1 GeneID:822103
            KEGG:ath:AT3G25120 TAIR:At3g25120 InParanoid:Q9LSG5 OMA:CYCGARE
            PhylomeDB:Q9LSG5 ProtClustDB:CLSN2688751 Genevestigator:Q9LSG5
            Uniprot:Q9LSG5
        Length = 189

 Score = 342 (125.4 bits), Expect = 4.2e-31, P = 4.2e-31
 Identities = 73/167 (43%), Positives = 101/167 (60%)

Query:    25 ERIIVPAIXXXXXXXXXXXXXKHRKVHGLANISATYATNLSIVTACYCGAREFVRVSRKT 84
             +R+++ ++             KHR  H   NI   YA N +IV  CYCGARE VR++R++
Sbjct:    31 KRVLITSLLAGVIGGGAGLVSKHRIAH--PNIPTVYAANFAIVAGCYCGARESVRITRRS 88

Query:    85 GPDDLVNSAIAGFGSXXXXXXXXXXXXXXXXYSVIFAVVGTTVDYATLRLAPIIRNFRES 144
               DDL+NSAI G  S                YS++FA VGT  DYATL+  P++    ES
Sbjct:    89 EHDDLMNSAIGGLFSGALLGRLQGGPKGAIRYSLVFAAVGTAFDYATLKGKPML----ES 144

Query:   145 HKDGDWLKLPEWSPIQVLDEEALAEKKAREQKLYAQTQQALGKLRKE 191
             +++ +  KLPEWSPI+VLDEEALA+KKA E+K++ +  + LGKL KE
Sbjct:   145 YRNMESFKLPEWSPIKVLDEEALAKKKAHEEKIFPE--RVLGKLNKE 189


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.132   0.380    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      193       158   0.00085  106 3  11 22  0.38    32
                                                     30  0.43    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  582 (62 KB)
  Total size of DFA:  135 KB (2084 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  11.93u 0.17s 12.10t   Elapsed:  00:00:01
  Total cpu time:  11.93u 0.17s 12.10t   Elapsed:  00:00:01
  Start:  Fri May 10 22:23:28 2013   End:  Fri May 10 22:23:29 2013

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