BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 029467
         (193 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|A9AAH0|THIM_METM6 Hydroxyethylthiazole kinase OS=Methanococcus maripaludis (strain C6
           / ATCC BAA-1332) GN=thiM PE=3 SV=1
          Length = 266

 Score = 32.3 bits (72), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 71/153 (46%), Gaps = 23/153 (15%)

Query: 31  AILAGLVGGVSGLLSKHRKVHGLANISATYATNLSIVTACYCGAREFVRVSRKTGPDDLV 90
           ++L G  G ++ +L +H K  G+   SA Y +N +I       A+EF  VS  TGP D V
Sbjct: 116 SVLRGNFGEIAAVLGEHGKTKGVD--SAAYDSNEAI-ELSKNAAKEFNTVSAVTGPIDYV 172

Query: 91  NSA--IAGFGSG-ALLGRLQG---------GQRGALRYSVIFAVVGTTVDYATLRLAPII 138
           ++   I    +G  +L ++ G         G   A+   +  AV G TV   +  +A   
Sbjct: 173 SNGKEIYAISNGHPMLSKVTGTGCATTSIIGAFSAVDEPIKAAVSGLTVYGISAEMA--- 229

Query: 139 RNFRESHKDGDW-LKLPEWSPIQVLDEEALAEK 170
             F E+   G +  K+ +W  +  +DEE + EK
Sbjct: 230 --FGEAPYPGTFQAKVYDW--LYRIDEELVLEK 258


>sp|A6UPE5|THIM_METVS Hydroxyethylthiazole kinase OS=Methanococcus vannielii (strain SB /
           ATCC 35089 / DSM 1224) GN=thiM PE=3 SV=1
          Length = 266

 Score = 32.0 bits (71), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 3/62 (4%)

Query: 31  AILAGLVGGVSGLLSKHRKVHGLANISATYATNLSIVTACYCGAREFVRVSRKTGPDDLV 90
           ++L G  G +S LL +H K  G+   SA Y  N ++       ++EF  VS  TGP D V
Sbjct: 116 SVLRGNFGEISALLGEHGKTKGVD--SAVYDNNEAL-NISKNASKEFNTVSTVTGPIDYV 172

Query: 91  NS 92
           ++
Sbjct: 173 SN 174


>sp|P47551|Y309_MYCGE Uncharacterized lipoprotein MG309 OS=Mycoplasma genitalium (strain
           ATCC 33530 / G-37 / NCTC 10195) GN=MG309 PE=3 SV=1
          Length = 1225

 Score = 32.0 bits (71), Expect = 2.5,   Method: Composition-based stats.
 Identities = 12/21 (57%), Positives = 16/21 (76%)

Query: 129 YATLRLAPIIRNFRESHKDGD 149
           Y T+RLAP++RNF E + D D
Sbjct: 71  YLTMRLAPVLRNFYEENVDDD 91


>sp|P58698|Y1502_CLOPE Uncharacterized protein CPE1502 OS=Clostridium perfringens (strain
           13 / Type A) GN=CPE1502 PE=4 SV=1
          Length = 337

 Score = 31.6 bits (70), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)

Query: 66  IVTACYCGAREFVRVSRKTGPDDLVNSAIA 95
           +V  C+C A E VR+ R+ GP DL+   IA
Sbjct: 142 LVEVCFCEATEDVRIYREKGP-DLIGKLIA 170


>sp|A4FX33|THIM_METM5 Hydroxyethylthiazole kinase OS=Methanococcus maripaludis (strain C5
           / ATCC BAA-1333) GN=thiM PE=3 SV=1
          Length = 266

 Score = 31.2 bits (69), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 3/62 (4%)

Query: 31  AILAGLVGGVSGLLSKHRKVHGLANISATYATNLSIVTACYCGAREFVRVSRKTGPDDLV 90
           ++L G  G ++ +L +H K  G+   SA Y +N +I       A+EF  VS  TGP D V
Sbjct: 116 SVLRGNFGEIAAVLGEHGKTRGVD--SAAYDSNEAI-ELSKNAAKEFNTVSAVTGPVDYV 172

Query: 91  NS 92
           ++
Sbjct: 173 SN 174


>sp|O31551|ACOR_BACSU Acetoin dehydrogenase operon transcriptional activator AcoR
           OS=Bacillus subtilis (strain 168) GN=acoR PE=2 SV=1
          Length = 605

 Score = 30.8 bits (68), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 14/39 (35%), Positives = 21/39 (53%)

Query: 77  FVRVSRKTGPDDLVNSAIAGFGSGALLGRLQGGQRGALR 115
           FV V+    P DL+ S + G+  GA  G  + G +GA +
Sbjct: 347 FVAVNCGAIPSDLIESELFGYAEGAFTGAKRNGYKGAFQ 385


>sp|Q6LY53|THIM_METMP Hydroxyethylthiazole kinase OS=Methanococcus maripaludis (strain S2
           / LL) GN=thiM PE=3 SV=2
          Length = 266

 Score = 30.0 bits (66), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 3/62 (4%)

Query: 31  AILAGLVGGVSGLLSKHRKVHGLANISATYATNLSIVTACYCGAREFVRVSRKTGPDDLV 90
           ++L G  G ++ +L +H K  G+   SA Y +N +I       A+EF  VS  TGP D V
Sbjct: 116 SVLRGNFGEIAAVLGEHGKTRGVD--SAAYDSNEAI-ELSKNAAKEFNTVSAVTGPVDHV 172

Query: 91  NS 92
           ++
Sbjct: 173 SN 174


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.315    0.132    0.375 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,490,162
Number of Sequences: 539616
Number of extensions: 2839023
Number of successful extensions: 7396
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 7393
Number of HSP's gapped (non-prelim): 13
length of query: 193
length of database: 191,569,459
effective HSP length: 111
effective length of query: 82
effective length of database: 131,672,083
effective search space: 10797110806
effective search space used: 10797110806
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)