Query 029467
Match_columns 193
No_of_seqs 19 out of 21
Neff 3.3
Searched_HMMs 46136
Date Fri Mar 29 13:23:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029467.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029467hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02466 Tim17: Tim17/Tim22/Ti 99.1 7E-11 1.5E-15 89.9 6.0 107 22-131 1-125 (128)
2 PTZ00236 mitochondrial import 98.6 1.2E-07 2.5E-12 79.1 7.2 105 29-136 20-138 (164)
3 TIGR00980 3a0801so1tim17 mitoc 98.6 1.2E-07 2.6E-12 79.3 6.8 72 55-129 55-126 (170)
4 TIGR00983 3a0801s02tim23 mitoc 98.5 3.4E-07 7.4E-12 74.8 6.6 107 14-123 21-145 (149)
5 KOG3225 Mitochondrial import i 98.2 9.9E-07 2.1E-11 74.1 3.7 99 28-129 43-162 (168)
6 KOG1652 Mitochondrial import i 96.6 0.0017 3.6E-08 55.7 2.9 64 57-123 57-120 (183)
7 PF13436 Gly-zipper_OmpA: Glyc 94.8 0.051 1.1E-06 42.7 4.5 51 87-137 50-101 (118)
8 KOG3324 Mitochondrial import i 94.4 0.08 1.7E-06 46.2 5.3 67 59-132 127-193 (206)
9 COG5596 TIM22 Mitochondrial im 90.3 0.16 3.5E-06 43.9 1.8 74 51-127 110-183 (191)
10 PF13488 Gly-zipper_Omp: Glyci 82.7 2.2 4.9E-05 28.9 3.7 38 93-130 3-41 (46)
11 TIGR03789 pdsO proteobacterial 82.5 0.69 1.5E-05 40.7 1.4 37 90-126 40-76 (239)
12 COG3918 Predicted membrane pro 81.1 2.1 4.5E-05 35.7 3.6 74 56-129 39-117 (153)
13 KOG0762 Mitochondrial carrier 79.3 0.75 1.6E-05 42.1 0.6 80 22-107 3-122 (311)
14 PF13441 Gly-zipper_YMGG: YMGG 77.2 2.2 4.8E-05 29.2 2.3 40 88-127 2-42 (45)
15 PRK10510 putative outer membra 67.6 8.8 0.00019 32.9 4.3 48 92-139 38-89 (219)
16 KOG3817 Uncharacterized conser 57.4 23 0.00051 34.2 5.4 27 158-190 313-339 (452)
17 PF13436 Gly-zipper_OmpA: Glyc 55.2 16 0.00035 28.7 3.4 62 76-137 35-97 (118)
18 PF11981 DUF3482: Domain of un 54.7 15 0.00032 33.3 3.5 43 92-135 151-196 (292)
19 PF05433 Rick_17kDa_Anti: Glyc 54.7 21 0.00046 23.8 3.4 35 93-127 3-37 (42)
20 PF06120 Phage_HK97_TLTM: Tail 53.9 35 0.00077 31.3 5.8 89 91-189 8-101 (301)
21 PF06946 Phage_holin_5: Phage 48.1 61 0.0013 25.4 5.5 48 77-125 21-72 (93)
22 PF10225 DUF2215: Uncharacteri 47.2 10 0.00022 33.3 1.3 28 157-190 187-214 (249)
23 COG4803 Predicted membrane pro 47.1 13 0.00027 31.9 1.8 73 87-162 52-133 (170)
24 PLN02806 complex I subunit 47.0 22 0.00048 27.3 2.9 30 116-145 5-36 (81)
25 COG3926 zliS Lysozyme family p 45.4 16 0.00034 33.1 2.2 93 40-135 120-249 (252)
26 TIGR03789 pdsO proteobacterial 44.3 18 0.00039 32.0 2.4 46 90-135 36-81 (239)
27 PRK11280 hypothetical protein; 43.0 33 0.00071 29.3 3.6 40 88-127 63-102 (170)
28 PRK09430 djlA Dna-J like membr 41.1 21 0.00045 31.5 2.3 32 96-131 5-36 (267)
29 PF13488 Gly-zipper_Omp: Glyci 40.6 30 0.00064 23.4 2.5 42 96-137 2-44 (46)
30 PF05818 TraT: Enterobacterial 36.7 34 0.00074 30.2 2.9 39 92-130 89-128 (215)
31 KOG4608 Uncharacterized conser 36.0 33 0.00071 31.4 2.7 59 66-127 140-198 (270)
32 PF05957 DUF883: Bacterial pro 34.7 25 0.00055 25.8 1.5 33 76-108 60-92 (94)
33 PF09851 SHOCT: Short C-termin 34.3 34 0.00074 21.1 1.8 12 161-172 16-27 (31)
34 COG4980 GvpP Gas vesicle prote 32.7 24 0.00052 28.4 1.2 28 24-51 4-31 (115)
35 PF06897 DUF1269: Protein of u 32.2 34 0.00074 26.4 2.0 52 93-147 1-54 (102)
36 PF10439 Bacteriocin_IIc: Bact 31.6 41 0.00089 23.7 2.2 34 88-125 24-57 (65)
37 PF08559 Cut8_C: Cut8 six-heli 29.9 37 0.00081 27.7 1.9 18 128-145 30-47 (143)
38 PF05230 MASE2: MASE2 domain; 29.1 50 0.0011 25.2 2.4 37 78-121 53-90 (91)
39 PF08858 IDEAL: IDEAL domain; 28.0 1.1E+02 0.0023 19.7 3.4 20 171-190 8-27 (37)
40 CHL00154 rpl29 ribosomal prote 27.7 79 0.0017 22.9 3.1 35 155-189 5-41 (67)
41 PF14962 AIF-MLS: Mitochondria 26.2 22 0.00048 30.7 0.0 51 111-161 44-94 (180)
42 PF05680 ATP-synt_E: ATP synth 25.3 3E+02 0.0066 20.8 6.5 22 112-137 11-32 (86)
43 PHA00276 phage lambda Rz-like 24.6 79 0.0017 26.6 2.9 17 160-176 34-50 (144)
44 PF10406 TAF8_C: Transcription 24.1 1.5E+02 0.0033 20.2 3.8 35 150-188 16-50 (51)
45 PF05120 GvpG: Gas vesicle pro 24.1 1.2E+02 0.0026 22.9 3.5 18 161-181 48-65 (79)
46 COG0225 MsrA Peptide methionin 23.9 27 0.00059 30.0 0.1 18 64-81 9-26 (174)
47 PF08178 GnsAB: GnsA/GnsB fami 23.7 1.5E+02 0.0032 21.4 3.7 27 163-191 2-28 (54)
48 PF05818 TraT: Enterobacterial 23.7 59 0.0013 28.7 2.2 50 87-136 80-130 (215)
49 PF12597 DUF3767: Protein of u 23.6 1.9E+02 0.0042 22.9 4.9 49 87-135 42-90 (118)
50 PF06738 DUF1212: Protein of u 23.3 2.2E+02 0.0049 22.9 5.3 48 87-135 102-149 (193)
51 PF09210 DUF1957: Domain of un 23.1 59 0.0013 25.2 1.8 22 124-145 50-71 (102)
52 PF08560 DUF1757: Protein of u 22.9 1.7E+02 0.0036 24.4 4.6 53 66-134 40-92 (155)
53 PF08819 DUF1802: Domain of un 22.6 67 0.0015 27.2 2.2 24 148-171 147-174 (177)
54 PF07780 Spb1_C: Spb1 C-termin 22.5 1.1E+02 0.0023 27.1 3.5 18 152-169 74-100 (215)
55 COG4291 Predicted membrane pro 22.2 3.9E+02 0.0085 24.1 6.9 98 33-135 25-146 (228)
56 PF06295 DUF1043: Protein of u 22.1 3.3E+02 0.0072 21.5 5.9 18 117-134 2-19 (128)
57 PF07131 DUF1382: Protein of u 22.0 1.1E+02 0.0025 22.4 3.0 15 155-169 25-39 (61)
58 PF03469 XH: XH domain; Inter 21.5 2.1E+02 0.0046 23.5 4.8 37 154-190 42-91 (132)
59 PRK10017 colanic acid biosynth 21.0 2E+02 0.0043 27.1 5.2 52 133-190 353-409 (426)
60 PF04226 Transgly_assoc: Trans 20.8 1.3E+02 0.0029 20.2 3.0 26 104-129 15-40 (48)
61 KOG0758 Mitochondrial carnitin 20.6 1.1E+02 0.0024 28.4 3.4 86 29-132 14-99 (297)
62 PF08295 Sin3_corepress: Sin3 20.3 79 0.0017 24.6 2.0 11 147-157 33-43 (101)
No 1
>PF02466 Tim17: Tim17/Tim22/Tim23/Pmp24 family; InterPro: IPR003397 The membrane-embedded multi-protein complexes of mitochondria mediate the transport of nuclear-encoded proteins across and into the outer or inner mitochondrial membranes []. The TOM (translocase of the outer mitochondrial membrane) complex consists of cytosol-exposed receptors and a pore-forming core, and mediates the transport of proteins from the cytosol across and into the outer mitochondrial membrane. A novel protein complex in the outer membrane of mitochondria, called the SAM complex (sorting and assembly machinery), is involved in the biogenesis of beta-barrel proteins of the outer membrane. Two translocases of the inner mitochondrial membrane (TIM22 and TIM23 complexes) mediate protein transport at the inner membrane. The TIM23 complex (a presequence translocase) mediates the transport of presequence-containing proteins across and into the inner membrane. Tim23 and Tim17 form part of this complex. Tim23 forms a pore in the inner membrane. The role of Tim17 is not yet fully understood. The TIM22 complex (a twin-pore carrier translocase) catalyses the insertion of multi-spanning proteins that have internal targeting signals into the inner membrane. The TIM22 complex mediates the membrane insertion of multi-spanning inner-membrane proteins that have internal targeting signals, and it uses the membrane potential as an external driving force. The Tim22 subunit of the mitochondrial import inner membrane translocase is included in this family. This family also includes Pmp24, a peroxisomal membrane protein, and NADH ubiquinone dehydrogenase 1 alpha subunit 11. Pmp24 was previously known as Pmp27 [].
Probab=99.15 E-value=7e-11 Score=89.89 Aligned_cols=107 Identities=26% Similarity=0.280 Sum_probs=87.2
Q ss_pred CcccchhhhhHHhhhhhchhhhhhhchh-------c-------ccchhh----hhhhhhhhhhhhhhhhhHHHHHHHHhh
Q 029467 22 GRKERIIVPAILAGLVGGVSGLLSKHRK-------V-------HGLANI----SATYATNLSIVTACYCGAREFVRVSRK 83 (193)
Q Consensus 22 ~w~~rilip~l~AG~~GggaGll~~~~~-------~-------~~~~~~----aa~~a~N~~Iv~scf~garE~~r~~R~ 83 (193)
.|.+|++..+....+.|...|.+.+... . ....+- +..++.+|..++.+|.+.+-+.+..|.
T Consensus 1 ~c~~~~~~~~~~g~~~G~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~y~~~~~~l~~~R~ 80 (128)
T PF02466_consen 1 SCPERILDSTGKGFVAGAVFGGFIGAISAFTRPPRGSPLRPRLRSILNAVGRRGPRHGARFGSFGGLYSGIECALERLRG 80 (128)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4889999999999999998888888651 1 111222 223899999999999999999999995
Q ss_pred cCCCCchhhhhhhhhhhhhhhhhcCCCCCchhHHHHHHHHhhhHHHHH
Q 029467 84 TGPDDLVNSAIAGFGSGALLGRLQGGQRGALRYSVIFAVVGTTVDYAT 131 (193)
Q Consensus 84 t~pdd~inSavaG~~SGa~lGrlqGG~~~a~~yav~fA~vGtg~~~a~ 131 (193)
.||+.|+++||+++|++++. +.|+...+.++++++++.+.++|.-
T Consensus 81 --k~D~~N~~~aG~~aGa~~~~-~~g~~~~~~~~~~~a~~~~~~~~~~ 125 (128)
T PF02466_consen 81 --KDDPWNSAIAGAAAGAVLGL-RSGPRGMASGAALGAAFAAAVEYYG 125 (128)
T ss_pred --ccccchhHHHHHHHHHHHHh-ccChHHHHHHHHHHHHHHHHHHHHh
Confidence 49999999999999998887 5579888888888888888887754
No 2
>PTZ00236 mitochondrial import inner membrane translocase subunit tim17; Provisional
Probab=98.61 E-value=1.2e-07 Score=79.11 Aligned_cols=105 Identities=20% Similarity=0.215 Sum_probs=76.2
Q ss_pred hhhHHhhhhhchhhhhhhchhc----ccc-------hhhhhhhhhhhhhhhhhhhhHHHHHHHHhhcCCCCchhhhhhhh
Q 029467 29 VPAILAGLVGGVSGLLSKHRKV----HGL-------ANISATYATNLSIVTACYCGAREFVRVSRKTGPDDLVNSAIAGF 97 (193)
Q Consensus 29 ip~l~AG~~GggaGll~~~~~~----~~~-------~~~aa~~a~N~~Iv~scf~garE~~r~~R~t~pdd~inSavaG~ 97 (193)
..+...|.++|+++.+.+.-++ +.+ ..=+-.++.||.+++..|.+..-.+...|.. ||+.||+++|+
T Consensus 20 G~af~~G~vgG~~~~~~~G~rnsp~g~rl~g~l~~~~~rap~~g~~FAv~G~~ys~~ec~~~~~R~K--~D~~Nsi~AG~ 97 (164)
T PTZ00236 20 GGAFSMGCIGGFIWHFLKGMRNSPKGERFSGGFYLLRKRAPILGGNFAIWGGLFSTFDCTLQYLRGK--EDHWNAIASGF 97 (164)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHcc--CchHHHHHHHH
Confidence 4556777777777766554442 211 1123578899999999999999999999955 99999999999
Q ss_pred hhhhhhhhhcCCCCCchhHHHHHHHHhh---hHHHHHhhhch
Q 029467 98 GSGALLGRLQGGQRGALRYSVIFAVVGT---TVDYATLRLAP 136 (193)
Q Consensus 98 ~SGa~lGrlqGG~~~a~~yav~fA~vGt---g~~~a~~k~~~ 136 (193)
+||++|+. ++|+..+...+++++++.+ ++..+.+|+..
T Consensus 98 ~TGa~l~~-r~G~~~~~~~a~~Gg~~~~~ie~~~i~~~~~~~ 138 (164)
T PTZ00236 98 FTGGVLAI-RGGWRSAVRNAIFGGILLGIIELVSIGMNRRQM 138 (164)
T ss_pred HHHHHHHH-hcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999976 5558777777777766633 44555556553
No 3
>TIGR00980 3a0801so1tim17 mitochondrial import inner membrane translocase subunit tim17.
Probab=98.59 E-value=1.2e-07 Score=79.26 Aligned_cols=72 Identities=24% Similarity=0.291 Sum_probs=60.4
Q ss_pred hhhhhhhhhhhhhhhhhhhHHHHHHHHhhcCCCCchhhhhhhhhhhhhhhhhcCCCCCchhHHHHHHHHhhhHHH
Q 029467 55 NISATYATNLSIVTACYCGAREFVRVSRKTGPDDLVNSAIAGFGSGALLGRLQGGQRGALRYSVIFAVVGTTVDY 129 (193)
Q Consensus 55 ~~aa~~a~N~~Iv~scf~garE~~r~~R~t~pdd~inSavaG~~SGa~lGrlqGG~~~a~~yav~fA~vGtg~~~ 129 (193)
.-+-.++.||.+++..|++..-.+...|.. ||+.||+++|+++|++|+. ++|+.-++.++++++++=+.+++
T Consensus 55 ~rap~~g~~Fav~g~lys~~ec~i~~~R~K--eD~~NsiiAG~~TGa~l~~-r~G~~a~~~~aa~gg~~la~ie~ 126 (170)
T TIGR00980 55 TRAPVLGGNFAVWGGLFSTIDCAVVAIRKK--EDPWNSIISGFLTGAALAV-RGGPRAMRGSAILGACILAVIEG 126 (170)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHHHh-ccChHHHHHHHHHHHHHHHHHHH
Confidence 344567999999999999999999999965 9999999999999999998 66688888888888877444443
No 4
>TIGR00983 3a0801s02tim23 mitochondrial import inner membrane translocase subunit tim23.
Probab=98.48 E-value=3.4e-07 Score=74.75 Aligned_cols=107 Identities=22% Similarity=0.313 Sum_probs=78.5
Q ss_pred CCCCCCCCCcccchhhhh----HHhhhhhchhhhhhhchhcc--------------cchhhhhhhhhhhhhhhhhhhhHH
Q 029467 14 PSASSSSDGRKERIIVPA----ILAGLVGGVSGLLSKHRKVH--------------GLANISATYATNLSIVTACYCGAR 75 (193)
Q Consensus 14 ~~~~~~s~~w~~rilip~----l~AG~~GggaGll~~~~~~~--------------~~~~~aa~~a~N~~Iv~scf~gar 75 (193)
|+....+-+|.|.+.--+ ++..++|+..|++.+.+... .....+..++-||.+++..|++..
T Consensus 21 ~~g~~~~R~~~e~~~~~~G~ay~~G~~~Gg~~Gl~~G~~~~~~~~~~k~rln~~ln~~~~~g~~~G~~~g~~g~lys~~e 100 (149)
T TIGR00983 21 LTGANPSRGWFEDLCFGTGTCYLTGLAIGALNGLRLGLKETQSMPWTKLRLNQILNMVTRRGPFWGNTLGILALVYNGIN 100 (149)
T ss_pred CCCCCCCCChhhhhhhhHhHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHH
Confidence 344456677888665443 35556677778888777531 123456788999999999999999
Q ss_pred HHHHHHhhcCCCCchhhhhhhhhhhhhhhhhcCCCCCchhHHHHHHHH
Q 029467 76 EFVRVSRKTGPDDLVNSAIAGFGSGALLGRLQGGQRGALRYSVIFAVV 123 (193)
Q Consensus 76 E~~r~~R~t~pdd~inSavaG~~SGa~lGrlqGG~~~a~~yav~fA~v 123 (193)
-.+...|.. ||+.||++||++||+++..=+| +..++.++++.+++
T Consensus 101 ~~i~~~R~k--~D~~Nsv~AGa~TGal~~~~~G-~r~~~~g~~~G~~l 145 (149)
T TIGR00983 101 SIIEATRGK--HDDFNSVAAGALTGALYKSTRG-LRGMARSGALGATA 145 (149)
T ss_pred HHHHHHhcc--chhhHhHHHHHHHHHHHHhccC-hHHHHHHhHHHHHH
Confidence 999999976 9999999999999999988544 75555555554444
No 5
>KOG3225 consensus Mitochondrial import inner membrane translocase, subunit TIM22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.22 E-value=9.9e-07 Score=74.12 Aligned_cols=99 Identities=26% Similarity=0.324 Sum_probs=75.9
Q ss_pred hhhhHHhhhhhchhhhhhh----chh-ccc----------------chhhhhhhhhhhhhhhhhhhhHHHHHHHHhhcCC
Q 029467 28 IVPAILAGLVGGVSGLLSK----HRK-VHG----------------LANISATYATNLSIVTACYCGAREFVRVSRKTGP 86 (193)
Q Consensus 28 lip~l~AG~~GggaGll~~----~~~-~~~----------------~~~~aa~~a~N~~Iv~scf~garE~~r~~R~t~p 86 (193)
.+.++++||.|.++|.+-+ .-. .|+ +.--.-+|+-||.+++..|.|...++...|+.
T Consensus 43 ~~Ka~~sgV~GfglG~~~GlFlas~d~~~~dP~i~~~~ar~q~~kdMg~r~~s~~knF~~iGlvfsg~Ec~iE~~RAK-- 120 (168)
T KOG3225|consen 43 AVKAVKSGVTGFGLGGAFGLFLASLDTQPNDPTIYRMPARKQVAKDMGQRSGSYAKNFAIIGLVFSGVECLIESFRAK-- 120 (168)
T ss_pred hHHHHHhhccccchhhhHHhhhhhcccCCCCCchhhhhhHHHHHHHHHhhhcchhhhhhhhhhhehhHHHHHHHHHhh--
Confidence 3447788888877776653 222 011 11224489999999999999999999999999
Q ss_pred CCchhhhhhhhhhhhhhhhhcCCCCCchhHHHHHHHHhhhHHH
Q 029467 87 DDLVNSAIAGFGSGALLGRLQGGQRGALRYSVIFAVVGTTVDY 129 (193)
Q Consensus 87 dd~inSavaG~~SGa~lGrlqGG~~~a~~yav~fA~vGtg~~~ 129 (193)
.||.|++++|+++|+-++.=. ||--+.-.+..|++.++.+++
T Consensus 121 ~D~~NgaiaG~vtGg~l~~ra-Gp~a~~~G~agfa~fS~~id~ 162 (168)
T KOG3225|consen 121 SDWYNGAIAGCVTGGSLGYRA-GPKAAAIGCAGFAAFSAAIDK 162 (168)
T ss_pred hchhcceeeeeeeccchhhcc-cchhhhhchhHHHHHHHHHHH
Confidence 899999999999999998655 476677777778888877765
No 6
>KOG1652 consensus Mitochondrial import inner membrane translocase, subunit TIM17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.58 E-value=0.0017 Score=55.66 Aligned_cols=64 Identities=19% Similarity=0.317 Sum_probs=54.0
Q ss_pred hhhhhhhhhhhhhhhhhHHHHHHHHhhcCCCCchhhhhhhhhhhhhhhhhcCCCCCchhHHHHHHHH
Q 029467 57 SATYATNLSIVTACYCGAREFVRVSRKTGPDDLVNSAIAGFGSGALLGRLQGGQRGALRYSVIFAVV 123 (193)
Q Consensus 57 aa~~a~N~~Iv~scf~garE~~r~~R~t~pdd~inSavaG~~SGa~lGrlqGG~~~a~~yav~fA~v 123 (193)
+-..+-||++.++.|.=.--.....|+- ||.+||+|+|.++|++|.. ++|+.-.+..+++|.++
T Consensus 57 ap~~ggsFAvwgglfSt~dC~Lv~~R~K--eDpwNsivsGa~TGg~La~-r~g~~a~~~sa~~~g~~ 120 (183)
T KOG1652|consen 57 APQSGGSFAVWGGLFSTVDCALVAIRKK--EDPWNSIVSGAATGGLLAA-RGGPKAMLTSAITGGLL 120 (183)
T ss_pred CcccccceeeeechhhHHHHHHHHHhcc--cchHHHHHHHhhccceeec-cccHHHHHHHHHHHHHH
Confidence 3457899999999998888777778887 9999999999999999974 56687777888888776
No 7
>PF13436 Gly-zipper_OmpA: Glycine-zipper containing OmpA-like membrane domain
Probab=94.80 E-value=0.051 Score=42.68 Aligned_cols=51 Identities=29% Similarity=0.363 Sum_probs=44.4
Q ss_pred CCchhhhhhhhhhhhhhhhhcCC-CCCchhHHHHHHHHhhhHHHHHhhhchh
Q 029467 87 DDLVNSAIAGFGSGALLGRLQGG-QRGALRYSVIFAVVGTTVDYATLRLAPI 137 (193)
Q Consensus 87 dd~inSavaG~~SGa~lGrlqGG-~~~a~~yav~fA~vGtg~~~a~~k~~~~ 137 (193)
.+....++.|.+.|+++|-+-|+ ..+++..+.+.+++|....+...+.+.+
T Consensus 50 ~~~~~ga~~GA~~GA~~Ga~~G~~~~ga~~GAa~Ga~~G~~~g~~~~~~~~~ 101 (118)
T PF13436_consen 50 ENTAGGAAIGAAAGAAIGAIIGGNGRGAAIGAAAGAAVGAAAGAARGRYQQY 101 (118)
T ss_pred hhHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHHHHHHhhhhhhhhhhh
Confidence 56778888999999999999999 8999999999999999988887776543
No 8
>KOG3324 consensus Mitochondrial import inner membrane translocase, subunit TIM23 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.42 E-value=0.08 Score=46.24 Aligned_cols=67 Identities=28% Similarity=0.343 Sum_probs=51.9
Q ss_pred hhhhhhhhhhhhhhhHHHHHHHHhhcCCCCchhhhhhhhhhhhhhhhhcCCCCCchhHHHHHHHHhhhHHHHHh
Q 029467 59 TYATNLSIVTACYCGAREFVRVSRKTGPDDLVNSAIAGFGSGALLGRLQGGQRGALRYSVIFAVVGTTVDYATL 132 (193)
Q Consensus 59 ~~a~N~~Iv~scf~garE~~r~~R~t~pdd~inSavaG~~SGa~lGrlqGG~~~a~~yav~fA~vGtg~~~a~~ 132 (193)
..+=+.=+++=.|.+....++.+|.- ||..||++||+.+|+++=.=+| +|.+.+-++||.+..-++-
T Consensus 127 ~~gN~lG~laL~YsaiesgI~~~R~~--dd~lnsv~AGalTGalyrs~~G-----lr~~av~ga~g~~aa~aw~ 193 (206)
T KOG3324|consen 127 FWGNTLGSLALMYSAIESGIEATRGK--DDDLNSVAAGALTGALYRSTRG-----LRAAAVAGAVGGTAAAAWT 193 (206)
T ss_pred ccccchhHHHHHHHHHHHHHHHhhcc--ccchhhhhhhhhhhhhhhcCCC-----chHHHHHHHHHHHHHHHHH
Confidence 34556667888899999999999998 8999999999999999865544 4666666666666555554
No 9
>COG5596 TIM22 Mitochondrial import inner membrane translocase, subunit TIM22 [Posttranslational modification, protein turnover, chaperones]
Probab=90.31 E-value=0.16 Score=43.92 Aligned_cols=74 Identities=22% Similarity=0.251 Sum_probs=58.6
Q ss_pred ccchhhhhhhhhhhhhhhhhhhhHHHHHHHHhhcCCCCchhhhhhhhhhhhhhhhhcCCCCCchhHHHHHHHHhhhH
Q 029467 51 HGLANISATYATNLSIVTACYCGAREFVRVSRKTGPDDLVNSAIAGFGSGALLGRLQGGQRGALRYSVIFAVVGTTV 127 (193)
Q Consensus 51 ~~~~~~aa~~a~N~~Iv~scf~garE~~r~~R~t~pdd~inSavaG~~SGa~lGrlqGG~~~a~~yav~fA~vGtg~ 127 (193)
-++..-+-..+-|+-+++..|-+-..+....|+- .|+-|++.+|+++|+.+.+-.|.+.-. -.+.+|++.-.+.
T Consensus 110 ~n~~~rg~ftG~n~GvlGl~y~~~ns~I~~~r~k--~d~~~~iaaG~~TGa~~~~~~g~qa~~-~~~a~~aa~s~~~ 183 (191)
T COG5596 110 NNAGKRGFFTGKNLGVLGLIYAGINSIITALRAK--HDIANAIAAGAFTGAALASSAGPQAMP-MGGAGFAAFSAGI 183 (191)
T ss_pred ccccccccccccccceeeeecccchhhhhhhhhc--cccchhhhhhhhhhHHHHhhccccccc-cCccchhhhhhhH
Confidence 3444556678899999999999999999999987 899999999999999999999966443 3445566554443
No 10
>PF13488 Gly-zipper_Omp: Glycine zipper
Probab=82.71 E-value=2.2 Score=28.89 Aligned_cols=38 Identities=32% Similarity=0.454 Sum_probs=24.6
Q ss_pred hhhhhhhhhhhhhhcCCC-CCchhHHHHHHHHhhhHHHH
Q 029467 93 AIAGFGSGALLGRLQGGQ-RGALRYSVIFAVVGTTVDYA 130 (193)
Q Consensus 93 avaG~~SGa~lGrlqGG~-~~a~~yav~fA~vGtg~~~a 130 (193)
++-|.+.|+++|.+.+++ .+++..+++.+++|..+.+-
T Consensus 3 a~iGA~~Ga~iG~~~g~~~~ga~iGa~vGa~~G~~ig~~ 41 (46)
T PF13488_consen 3 AAIGAAAGAAIGAATGGPGKGAAIGAAVGAAVGAAIGNY 41 (46)
T ss_pred HHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHHHH
Confidence 456778888888888864 55555555555555554443
No 11
>TIGR03789 pdsO proteobacterial sortase system OmpA family protein. A newly defined histidine kinase (TIGR03785) and response regulator (TIGR03787) gene pair occurs exclusively in Proteobacteria, mostly of marine origin, nearly all of which contain a subfamily 6 sortase (TIGR03784) and its single dedicated target protein (TIGR03788) adjacent to to the sortase. This protein family shows up in only in those species with the histidine kinase/response regulator gene pair, and often adjacent to that pair. It belongs to the OmpA protein family (pfam00691). Its function is unknown. We assign the gene symbol pdsO, for Proteobacterial Dedicated Sortase system OmpA family protein.
Probab=82.49 E-value=0.69 Score=40.69 Aligned_cols=37 Identities=41% Similarity=0.649 Sum_probs=27.8
Q ss_pred hhhhhhhhhhhhhhhhhcCCCCCchhHHHHHHHHhhh
Q 029467 90 VNSAIAGFGSGALLGRLQGGQRGALRYSVIFAVVGTT 126 (193)
Q Consensus 90 inSavaG~~SGa~lGrlqGG~~~a~~yav~fA~vGtg 126 (193)
.+.+..|+.+|+++|-+-|||.|++-++++.+++|..
T Consensus 40 ~~~~~~g~~~ga~~g~~~gg~~G~~~G~~~G~~~g~~ 76 (239)
T TIGR03789 40 DQEALIGLGSGALLGALVGGPVGAIIGGITGGLIGQA 76 (239)
T ss_pred ccchhhhHHHHHHHhhhhccHHHHHHHHHHHHHhhhh
Confidence 4445558889999999999997777777777766654
No 12
>COG3918 Predicted membrane protein [Function unknown]
Probab=81.10 E-value=2.1 Score=35.73 Aligned_cols=74 Identities=26% Similarity=0.226 Sum_probs=56.4
Q ss_pred hhhhhhhhhhhhhhhhhhHHHHHHHHhhcCCCCch-----hhhhhhhhhhhhhhhhcCCCCCchhHHHHHHHHhhhHHH
Q 029467 56 ISATYATNLSIVTACYCGAREFVRVSRKTGPDDLV-----NSAIAGFGSGALLGRLQGGQRGALRYSVIFAVVGTTVDY 129 (193)
Q Consensus 56 ~aa~~a~N~~Iv~scf~garE~~r~~R~t~pdd~i-----nSavaG~~SGa~lGrlqGG~~~a~~yav~fA~vGtg~~~ 129 (193)
++.-++.-|+.+--+.....|++.|-|-++|..-+ .-++=|.++|+++|---|=+-+.+-.+++.||.||=+-|
T Consensus 39 waSfMgs~waavIftvLAv~ELvtDqlPsTPsRkVp~qFgaRiimGAf~GAvIGatgg~~~gGLiaGvIGAViGT~GGa 117 (153)
T COG3918 39 WASFMGSFWAAVIFTVLAVAELVTDQLPSTPSRKVPPQFGARIIMGAFAGAVIGATGGYRWGGLIAGVIGAVIGTMGGA 117 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcCChhHhhhhhhhhhccccccccCCcEEehhhHhHHHHHHhccccH
Confidence 34444555566655667778999999998885433 456779999999998888888889999999999985544
No 13
>KOG0762 consensus Mitochondrial carrier protein [Energy production and conversion]
Probab=79.32 E-value=0.75 Score=42.10 Aligned_cols=80 Identities=26% Similarity=0.316 Sum_probs=49.6
Q ss_pred Ccccchhhhh---HHhhhhhchhhhhhhchhc--------------------ccchh----------------hhhhhhh
Q 029467 22 GRKERIIVPA---ILAGLVGGVSGLLSKHRKV--------------------HGLAN----------------ISATYAT 62 (193)
Q Consensus 22 ~w~~rilip~---l~AG~~GggaGll~~~~~~--------------------~~~~~----------------~aa~~a~ 62 (193)
.|.|-+-... ++||.+||.+|+|+||+-- |=..+ --+...+
T Consensus 3 ~~~e~~~~s~~ldfvAG~~GGvAGVl~GhPlDTvkVrlQtqs~~~PqYrgtfhcfr~ivq~e~~~gLYrGmssPl~~lt~ 82 (311)
T KOG0762|consen 3 FWPEFMATSMGLDFVAGGLGGVAGVLVGHPLDTVKVRLQTQSSKSPQYRGTFHCFRRIVQIEGFSGLYRGMSSPLASLTF 82 (311)
T ss_pred cchHhhhHHHHHHHHhccccccceeeecCCcceeEEEEeccCCCCCccCchhHHHHHHHHHhhhhHHhhhccCccchhhh
Confidence 4655554433 3899999999999999820 10000 0012222
Q ss_pred hhhhhhhhhhhHHHHHHHHhhcC-CCCchhhhhhhhhhhhhhhhhc
Q 029467 63 NLSIVTACYCGAREFVRVSRKTG-PDDLVNSAIAGFGSGALLGRLQ 107 (193)
Q Consensus 63 N~~Iv~scf~garE~~r~~R~t~-pdd~inSavaG~~SGa~lGrlq 107 (193)
.=+||-+.|... .|..+ ||.+.+-.+||.++|+.=+.|-
T Consensus 83 iNAiVFgV~g~~------~R~~~dpdS~~s~fl~G~aaGa~Q~vi~ 122 (311)
T KOG0762|consen 83 INAIVFGVYGNT------SRSFDDPDSYTSHFLGGVAAGAAQSVIC 122 (311)
T ss_pred hheeeEeeecch------hhccCCCCcHHHHHHHHHHHhhhhhhhc
Confidence 224555555543 35555 9999999999999998766543
No 14
>PF13441 Gly-zipper_YMGG: YMGG-like Gly-zipper
Probab=77.23 E-value=2.2 Score=29.24 Aligned_cols=40 Identities=30% Similarity=0.478 Sum_probs=30.2
Q ss_pred CchhhhhhhhhhhhhhhhhcC-CCCCchhHHHHHHHHhhhH
Q 029467 88 DLVNSAIAGFGSGALLGRLQG-GQRGALRYSVIFAVVGTTV 127 (193)
Q Consensus 88 d~inSavaG~~SGa~lGrlqG-G~~~a~~yav~fA~vGtg~ 127 (193)
+....+.-|...|+++|-+.| +..+++-.+.+.+++|...
T Consensus 2 ~t~~GA~iGA~~GA~iG~~~g~~~~GA~iGA~~Ga~~G~~~ 42 (45)
T PF13441_consen 2 KTVRGAAIGAAAGAVIGAIIGNGGKGAAIGAAAGALAGAAI 42 (45)
T ss_pred cchhHHHHHHHHHHHHHHhhCCCcccchhhhhhhhhhhhhh
Confidence 345667888999999999999 7777777777777766544
No 15
>PRK10510 putative outer membrane lipoprotein; Provisional
Probab=67.64 E-value=8.8 Score=32.90 Aligned_cols=48 Identities=29% Similarity=0.249 Sum_probs=30.6
Q ss_pred hhhhhhhhhhhhhhhcCCC----CCchhHHHHHHHHhhhHHHHHhhhchhhH
Q 029467 92 SAIAGFGSGALLGRLQGGQ----RGALRYSVIFAVVGTTVDYATLRLAPIIR 139 (193)
Q Consensus 92 SavaG~~SGa~lGrlqGG~----~~a~~yav~fA~vGtg~~~a~~k~~~~~~ 139 (193)
.+..|.+.|+++|.+-|+. .+++..+++.+++|.++-|-..+....++
T Consensus 38 ga~~Ga~~Ga~~G~~~g~~~~~~~~a~~ga~~G~~~G~~~g~~~d~q~~~l~ 89 (219)
T PRK10510 38 GAGIGSLVGAGIGALSSSKKDRGKGALIGAAAGAALGGGVGYYMDVQEAKLR 89 (219)
T ss_pred hhHHHHHHHHHHHhhhcCCCcccchhhhHhHHHhhhhhhhhhhhhhHHHHHH
Confidence 6777888999999888754 35555666666666665554444433333
No 16
>KOG3817 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.44 E-value=23 Score=34.15 Aligned_cols=27 Identities=37% Similarity=0.495 Sum_probs=19.5
Q ss_pred cceeccHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 029467 158 PIQVLDEEALAEKKAREQKLYAQTQQALGKLRK 190 (193)
Q Consensus 158 Piq~L~eE~~a~k~~~eekl~~~~~r~i~kl~k 190 (193)
|-+.||||||.+..+.| ...+|++||+
T Consensus 313 ~rRlLtEeEYeeQaeve------T~kaLaeLRe 339 (452)
T KOG3817|consen 313 KRRLLTEEEYEEQAEVE------TSKALAELRE 339 (452)
T ss_pred chhhcCHHHHHHHHHHH------HHHHHHHHHH
Confidence 35789999999866644 3466777775
No 17
>PF13436 Gly-zipper_OmpA: Glycine-zipper containing OmpA-like membrane domain
Probab=55.15 E-value=16 Score=28.67 Aligned_cols=62 Identities=19% Similarity=0.192 Sum_probs=46.6
Q ss_pred HHHHHHhhcCCCCchhhhhhhhhhhhhhhhhcCCCCCc-hhHHHHHHHHhhhHHHHHhhhchh
Q 029467 76 EFVRVSRKTGPDDLVNSAIAGFGSGALLGRLQGGQRGA-LRYSVIFAVVGTTVDYATLRLAPI 137 (193)
Q Consensus 76 E~~r~~R~t~pdd~inSavaG~~SGa~lGrlqGG~~~a-~~yav~fA~vGtg~~~a~~k~~~~ 137 (193)
++++..-..+++.--+.++.|.+.|+.+|-+-|...+- -..+++.|++|+.+=.+.-.....
T Consensus 35 ~~A~~~~~~~~~~~~~~~~~ga~~GA~~GA~~Ga~~G~~~~ga~~GAa~Ga~~G~~~g~~~~~ 97 (118)
T PF13436_consen 35 QYAQQQTNQDAQEAAENTAGGAAIGAAAGAAIGAIIGGNGRGAAIGAAAGAAVGAAAGAARGR 97 (118)
T ss_pred HHHHHhcccccchhhhhHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHHHHHHhhhhhhh
Confidence 34443333344445577788899999999999988888 899999999999987777766554
No 18
>PF11981 DUF3482: Domain of unknown function (DUF3482); InterPro: IPR021871 This presumed domain is functionally uncharacterised. This domain is found in bacteria and eukaryotes. This domain is typically between 289 to 301 amino acids in length. This domain is found associated with PF01926 from PFAM.
Probab=54.72 E-value=15 Score=33.26 Aligned_cols=43 Identities=26% Similarity=0.251 Sum_probs=24.5
Q ss_pred hhhhhhhhhhhhhhhcCCCC---CchhHHHHHHHHhhhHHHHHhhhc
Q 029467 92 SAIAGFGSGALLGRLQGGQR---GALRYSVIFAVVGTTVDYATLRLA 135 (193)
Q Consensus 92 SavaG~~SGa~lGrlqGG~~---~a~~yav~fA~vGtg~~~a~~k~~ 135 (193)
++.+|.++|+-+=.+.||.+ +++-++++.++.+++-.|+- |++
T Consensus 151 GaaaGAa~GagiDl~tgG~SLG~gaaiGal~Gg~~~~~~~~~~-~i~ 196 (292)
T PF11981_consen 151 GAAAGAAAGAGIDLATGGLSLGAGAAIGALAGGAWQGGRRYGK-RIK 196 (292)
T ss_pred hHHHHHHHhHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhHH-Hhh
Confidence 67777777777777888764 33344444444444444444 444
No 19
>PF05433 Rick_17kDa_Anti: Glycine zipper 2TM domain; InterPro: IPR008816 This domain includes a putative two transmembrane alpha-helical region that contains glycine zipper motifs []. The domain is found in several Rickettsia genus specific 17 kDa surface antigen proteins [].; GO: 0019867 outer membrane
Probab=54.67 E-value=21 Score=23.80 Aligned_cols=35 Identities=34% Similarity=0.431 Sum_probs=27.8
Q ss_pred hhhhhhhhhhhhhhcCCCCCchhHHHHHHHHhhhH
Q 029467 93 AIAGFGSGALLGRLQGGQRGALRYSVIFAVVGTTV 127 (193)
Q Consensus 93 avaG~~SGa~lGrlqGG~~~a~~yav~fA~vGtg~ 127 (193)
++.|.+.|+++|..-+...+....+++.+++|+-+
T Consensus 3 ~~~Ga~~Ga~~G~~ig~~~g~~~g~~~Ga~~Ga~~ 37 (42)
T PF05433_consen 3 ALIGAAVGAVAGSQIGGGNGRTLGAVAGAVAGALI 37 (42)
T ss_pred hHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHH
Confidence 46677888888888877788888888888888654
No 20
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=53.90 E-value=35 Score=31.32 Aligned_cols=89 Identities=28% Similarity=0.268 Sum_probs=40.5
Q ss_pred hhhhhhhhhhhhhhhhcCCCCCchhHHHHHHHHhhhHHHHHhhhchh---hHHhHhhhcCCCcc-ccCCCCcceeccHHH
Q 029467 91 NSAIAGFGSGALLGRLQGGQRGALRYSVIFAVVGTTVDYATLRLAPI---IRNFRESHKDGDWL-KLPEWSPIQVLDEEA 166 (193)
Q Consensus 91 nSavaG~~SGa~lGrlqGG~~~a~~yav~fA~vGtg~~~a~~k~~~~---~~~f~e~~~~~~w~-~~P~WsPiq~L~eE~ 166 (193)
.|+.+.+.+|++ | |-||| ++.+|.++ +++=|-+.+-... -..|-++|.+ +. ++.+=|++|.-++.+
T Consensus 8 tSv~~rl~~gal-g-LvGGp----~Gl~ml~A--gA~Y~~yQ~~EQAr~~A~~fA~~ld~--~~~kl~~Ms~~ql~~~~~ 77 (301)
T PF06120_consen 8 TSVGSRLLSGAL-G-LVGGP----PGLVMLGA--GAWYYFYQNAEQARQEAIEFADSLDE--LKEKLKEMSSTQLRANIA 77 (301)
T ss_pred HHHHHHHHHhHH-H-hhcch----HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhHH--HHHHHHhcCHHHHHHHHH
Confidence 455555555555 4 77888 44455442 2443333333321 2235544311 11 145556666666555
Q ss_pred HHHHHHHHHH-HHHHHHHHHHhhh
Q 029467 167 LAEKKAREQK-LYAQTQQALGKLR 189 (193)
Q Consensus 167 ~a~k~~~eek-l~~~~~r~i~kl~ 189 (193)
=++....|++ .+..+++.|..|+
T Consensus 78 k~~~si~~q~~~i~~l~~~i~~l~ 101 (301)
T PF06120_consen 78 KAEESIAAQKRAIEDLQKKIDSLK 101 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443333332 2233445555444
No 21
>PF06946 Phage_holin_5: Phage holin; InterPro: IPR009708 This entry represents the Bacteriophage A118, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=48.14 E-value=61 Score=25.40 Aligned_cols=48 Identities=23% Similarity=0.252 Sum_probs=33.6
Q ss_pred HHHHHhhcC--CCCch--hhhhhhhhhhhhhhhhcCCCCCchhHHHHHHHHhh
Q 029467 77 FVRVSRKTG--PDDLV--NSAIAGFGSGALLGRLQGGQRGALRYSVIFAVVGT 125 (193)
Q Consensus 77 ~~r~~R~t~--pdd~i--nSavaG~~SGa~lGrlqGG~~~a~~yav~fA~vGt 125 (193)
++...++|+ |++|+ =|++-|.+-|++..-+.+ ..+...+..+.++.|.
T Consensus 21 lVq~IkkT~~v~~K~iPlIs~viGilLG~~~~~~~~-~~~l~~~~~aG~laGl 72 (93)
T PF06946_consen 21 LVQAIKKTKVVPNKWIPLISVVIGILLGAAAYPLTG-DGNLALMAWAGGLAGL 72 (93)
T ss_pred HHHHHHHhccCCcchhhHHHHHHHHHHHHHhhhcCC-CccHHHHHHHHHHhhh
Confidence 577778887 78888 567777777777777776 4456666666666643
No 22
>PF10225 DUF2215: Uncharacterized conserved protein (DUF2215); InterPro: IPR024233 This entry represents a domain that is found in a number of different proteins, including a family of transmembrane proteins.
Probab=47.18 E-value=10 Score=33.27 Aligned_cols=28 Identities=36% Similarity=0.531 Sum_probs=21.3
Q ss_pred CcceeccHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 029467 157 SPIQVLDEEALAEKKAREQKLYAQTQQALGKLRK 190 (193)
Q Consensus 157 sPiq~L~eE~~a~k~~~eekl~~~~~r~i~kl~k 190 (193)
.|.+-|||||+.+.-+. | .+++|++||+
T Consensus 187 ~~rr~LteeEy~~q~~~-e-----T~kaL~eLr~ 214 (249)
T PF10225_consen 187 PKRRLLTEEEYEEQGER-E-----TRKALEELRE 214 (249)
T ss_pred CccccccccchhhcchH-h-----HHHHHHHHHH
Confidence 46888999999884442 2 5689999986
No 23
>COG4803 Predicted membrane protein [Function unknown]
Probab=47.14 E-value=13 Score=31.93 Aligned_cols=73 Identities=25% Similarity=0.289 Sum_probs=46.3
Q ss_pred CCchhhhhhhhhhhhhhhhhcCCCCCchhHHHHHHHHhhhHHHHHhhhchh------hHHhHhhhcCCCc--cc-cCCCC
Q 029467 87 DDLVNSAIAGFGSGALLGRLQGGQRGALRYSVIFAVVGTTVDYATLRLAPI------IRNFRESHKDGDW--LK-LPEWS 157 (193)
Q Consensus 87 dd~inSavaG~~SGa~lGrlqGG~~~a~~yav~fA~vGtg~~~a~~k~~~~------~~~f~e~~~~~~w--~~-~P~Ws 157 (193)
.-+||...+|..||++-|.|-|= .|-+-++..++|++.-.-.-++.++ +|...++++..+. |- .-+|.
T Consensus 52 kQ~~Nlt~aGa~sGafWG~LiGl---lFl~Pl~G~avGAa~GAl~g~l~DvGIdDdFik~l~~ti~pG~sALFvLi~k~t 128 (170)
T COG4803 52 KQLMNLTGAGAVSGAFWGMLIGL---LFLNPLLGMAVGAASGALSGSLTDVGIDDDFIKELGETIQPGSSALFVLISKMT 128 (170)
T ss_pred HHHhhhhhhccccccHHHHHHHH---HHHhHHHHHHHHHhhhhhccceeecCcCHHHHHHHHhhcCCCCeEEEEEeeccc
Confidence 45789999999999999999882 3444455556665544444466666 4444555554443 21 36777
Q ss_pred cceec
Q 029467 158 PIQVL 162 (193)
Q Consensus 158 Piq~L 162 (193)
|=+||
T Consensus 129 ~DKVl 133 (170)
T COG4803 129 EDKVL 133 (170)
T ss_pred hHHHH
Confidence 76665
No 24
>PLN02806 complex I subunit
Probab=46.98 E-value=22 Score=27.30 Aligned_cols=30 Identities=23% Similarity=0.286 Sum_probs=22.4
Q ss_pred HHHHHHHHhhhHHHHHhhhc--hhhHHhHhhh
Q 029467 116 YSVIFAVVGTTVDYATLRLA--PIIRNFRESH 145 (193)
Q Consensus 116 yav~fA~vGtg~~~a~~k~~--~~~~~f~e~~ 145 (193)
-.++.|++|.|+|+-.|-++ |+.++=|||.
T Consensus 5 ~t~~GA~lGlg~qlysNalRKLP~mrhPWeHV 36 (81)
T PLN02806 5 ATVVGALLGLGTQLYSNALRKLPLMRHPWEHV 36 (81)
T ss_pred HHHHHHHHHHHHHHHHhHHhhCccccCcHHHH
Confidence 45788999999999999665 6666544444
No 25
>COG3926 zliS Lysozyme family protein [General function prediction only]
Probab=45.41 E-value=16 Score=33.14 Aligned_cols=93 Identities=23% Similarity=0.219 Sum_probs=56.7
Q ss_pred hhhhhhhchhcccchhhhhhhhhhhhhhhhhhhhHHHHHHHH---------hhc-------------------------C
Q 029467 40 VSGLLSKHRKVHGLANISATYATNLSIVTACYCGAREFVRVS---------RKT-------------------------G 85 (193)
Q Consensus 40 gaGll~~~~~~~~~~~~aa~~a~N~~Iv~scf~garE~~r~~---------R~t-------------------------~ 85 (193)
+.+.+.+....-=+.+++..+..++--++.+-...+-+++.. +.| -
T Consensus 120 TLaAl~~~~~~~~i~~~~d~r~a~l~~l~tf~tfg~Gw~~rV~~vr~~~~a~~t~~~~~p~~~~~~~~~ka~~~D~~s~~ 199 (252)
T COG3926 120 TLAALKKDPANDLIGRICDARLAFLKHLSTFGTFGKGWTARVAEVRAIAQAWATDQVPQPAPFPNGGQGKAVVDDAPSTA 199 (252)
T ss_pred HHHHHHhccchhHHHHHHHHHHHHHhccccHhhhcchHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCceecCchhhc
Confidence 445555544444446788888888877766555555444332 111 1
Q ss_pred CCCchhhhhhhhhhhhhhhhhcCCCCCchhHHHHHH---HHhhhHHHHHhhhc
Q 029467 86 PDDLVNSAIAGFGSGALLGRLQGGQRGALRYSVIFA---VVGTTVDYATLRLA 135 (193)
Q Consensus 86 pdd~inSavaG~~SGa~lGrlqGG~~~a~~yav~fA---~vGtg~~~a~~k~~ 135 (193)
|.|+.-...||++|| +.-||- ..++++|++.-+ +.|.|+-|...|.+
T Consensus 200 ~~~~a~g~~G~~~sG--~~~~~~-~~~P~~~ala~~~~A~~g~gl~~~~~~~~ 249 (252)
T COG3926 200 PADLATGATGGLLSG--LYDLQN-QLSPLSYALASAVLAIGGLGLWYFNRKVK 249 (252)
T ss_pred cchhhhcCccccccc--hhhccc-CCCchHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 233444457788888 777777 678888876554 45888877666554
No 26
>TIGR03789 pdsO proteobacterial sortase system OmpA family protein. A newly defined histidine kinase (TIGR03785) and response regulator (TIGR03787) gene pair occurs exclusively in Proteobacteria, mostly of marine origin, nearly all of which contain a subfamily 6 sortase (TIGR03784) and its single dedicated target protein (TIGR03788) adjacent to to the sortase. This protein family shows up in only in those species with the histidine kinase/response regulator gene pair, and often adjacent to that pair. It belongs to the OmpA protein family (pfam00691). Its function is unknown. We assign the gene symbol pdsO, for Proteobacterial Dedicated Sortase system OmpA family protein.
Probab=44.34 E-value=18 Score=31.96 Aligned_cols=46 Identities=20% Similarity=0.047 Sum_probs=39.9
Q ss_pred hhhhhhhhhhhhhhhhhcCCCCCchhHHHHHHHHhhhHHHHHhhhc
Q 029467 90 VNSAIAGFGSGALLGRLQGGQRGALRYSVIFAVVGTTVDYATLRLA 135 (193)
Q Consensus 90 inSavaG~~SGa~lGrlqGG~~~a~~yav~fA~vGtg~~~a~~k~~ 135 (193)
.++...|.+.|+..|-+-||..+..-++++.+++|..+-....+-.
T Consensus 36 ~~~~~~~~~~g~~~ga~~g~~~gg~~G~~~G~~~G~~~g~~~~~~~ 81 (239)
T TIGR03789 36 QQEADQEALIGLGSGALLGALVGGPVGAIIGGITGGLIGQAVNNDE 81 (239)
T ss_pred hcccccchhhhHHHHHHHhhhhccHHHHHHHHHHHHHhhhhccCcH
Confidence 5889999999999999999999998899999999988877765433
No 27
>PRK11280 hypothetical protein; Provisional
Probab=42.96 E-value=33 Score=29.31 Aligned_cols=40 Identities=28% Similarity=0.356 Sum_probs=27.4
Q ss_pred CchhhhhhhhhhhhhhhhhcCCCCCchhHHHHHHHHhhhH
Q 029467 88 DLVNSAIAGFGSGALLGRLQGGQRGALRYSVIFAVVGTTV 127 (193)
Q Consensus 88 d~inSavaG~~SGa~lGrlqGG~~~a~~yav~fA~vGtg~ 127 (193)
+-+-.++.|.+.|+++|..-||-.+-.-..++.|++|.-+
T Consensus 63 ~~~~Gtv~Gav~Gg~~G~~iGgG~Gr~~at~~Ga~~G~~~ 102 (170)
T PRK11280 63 NRIAGSVLGAVAGGVLGHQFGGGRGKDVATVAGALGGGYA 102 (170)
T ss_pred CcchhHHHHHHHHHHhhhhccCCCccHHHHHHHHHHHHHH
Confidence 4455677778888889998887776555566666665433
No 28
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=41.13 E-value=21 Score=31.51 Aligned_cols=32 Identities=28% Similarity=0.260 Sum_probs=23.7
Q ss_pred hhhhhhhhhhhcCCCCCchhHHHHHHHHhhhHHHHH
Q 029467 96 GFGSGALLGRLQGGQRGALRYSVIFAVVGTTVDYAT 131 (193)
Q Consensus 96 G~~SGa~lGrlqGG~~~a~~yav~fA~vGtg~~~a~ 131 (193)
|-+-|+++|.+-||| +++++..++|.-+|-+.
T Consensus 5 gki~g~~~G~~~~g~----~Ga~~G~~~Gh~~d~~~ 36 (267)
T PRK09430 5 GKILGFAFGFLFGGF----FGALLGLLIGHMFDKAR 36 (267)
T ss_pred HHHHHHHHHHHHhhH----HHHHHHHHHHhHHhhhh
Confidence 567789999999999 56666667776666543
No 29
>PF13488 Gly-zipper_Omp: Glycine zipper
Probab=40.58 E-value=30 Score=23.43 Aligned_cols=42 Identities=29% Similarity=0.237 Sum_probs=32.1
Q ss_pred hhhhhhhhhhhcCCCCC-chhHHHHHHHHhhhHHHHHhhhchh
Q 029467 96 GFGSGALLGRLQGGQRG-ALRYSVIFAVVGTTVDYATLRLAPI 137 (193)
Q Consensus 96 G~~SGa~lGrlqGG~~~-a~~yav~fA~vGtg~~~a~~k~~~~ 137 (193)
|...|+++|-+-|...+ ....+++.|++|+.+=+...+..++
T Consensus 2 Ga~iGA~~Ga~iG~~~g~~~~ga~iGa~vGa~~G~~ig~~~d~ 44 (46)
T PF13488_consen 2 GAAIGAAAGAAIGAATGGPGKGAAIGAAVGAAVGAAIGNYMDK 44 (46)
T ss_pred cHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHHHHHhc
Confidence 56778888888887776 4788888888888887777665543
No 30
>PF05818 TraT: Enterobacterial TraT complement resistance protein; InterPro: IPR008874 The traT gene is one of the F factor transfer genes and encodes an outer membrane protein which is involved in interactions between Escherichia coli and its surroundings []. The protein plays a role in preventing unproductive conjugation between bacteria carrying like plasmids.; GO: 0046999 regulation of conjugation, 0019867 outer membrane
Probab=36.67 E-value=34 Score=30.15 Aligned_cols=39 Identities=31% Similarity=0.432 Sum_probs=20.5
Q ss_pred hhhhhhhhhhhhhhhcCCCCCchhH-HHHHHHHhhhHHHH
Q 029467 92 SAIAGFGSGALLGRLQGGQRGALRY-SVIFAVVGTTVDYA 130 (193)
Q Consensus 92 SavaG~~SGa~lGrlqGG~~~a~~y-av~fA~vGtg~~~a 130 (193)
++++|.+.|+.+|..-++..+++-+ +++.+++|+..+-.
T Consensus 89 ga~~Ga~~G~~~g~~~~~~~g~~~G~GlaGalig~~ada~ 128 (215)
T PF05818_consen 89 GALAGAATGAAIGAYNSGSAGAAIGAGLAGALIGMIADAM 128 (215)
T ss_pred hHHHHhHHhhhhccccCCccchhhhhhHHHhHHHHHHhhh
Confidence 3444445555555444455555555 66666666655543
No 31
>KOG4608 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.96 E-value=33 Score=31.36 Aligned_cols=59 Identities=27% Similarity=0.320 Sum_probs=35.9
Q ss_pred hhhhhhhhHHHHHHHHhhcCCCCchhhhhhhhhhhhhhhhhcCCCCCchhHHHHHHHHhhhH
Q 029467 66 IVTACYCGAREFVRVSRKTGPDDLVNSAIAGFGSGALLGRLQGGQRGALRYSVIFAVVGTTV 127 (193)
Q Consensus 66 Iv~scf~garE~~r~~R~t~pdd~inSavaG~~SGa~lGrlqGG~~~a~~yav~fA~vGtg~ 127 (193)
..+++|.+-.-...+-|.- +|+-+=+.+|.++|++.+..-| -++-.+..++.+++|+.+
T Consensus 140 lfttSff~l~t~l~vyRgk--~a~~~fvaaga~tgsvF~~~~g-L~g~aa~vilG~~lG~tv 198 (270)
T KOG4608|consen 140 LFTTSFFTLNTSLNVYRGK--DALSHFVAAGAVTGSVFRINVG-LRGLAAGVILGALLGTTV 198 (270)
T ss_pred eehhhHHHHHHHHHHHcCc--hhhhhhhccccceeeeEEeehh-hHHHhhcceeehhhcchH
Confidence 3344444444555556765 8999999999999998766555 333333444444444443
No 32
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=34.74 E-value=25 Score=25.85 Aligned_cols=33 Identities=24% Similarity=0.166 Sum_probs=23.7
Q ss_pred HHHHHHhhcCCCCchhhhhhhhhhhhhhhhhcC
Q 029467 76 EFVRVSRKTGPDDLVNSAIAGFGSGALLGRLQG 108 (193)
Q Consensus 76 E~~r~~R~t~pdd~inSavaG~~SGa~lGrlqG 108 (193)
+.+..+...=.++++.|+...++.|.+||.|-+
T Consensus 60 ~~~~~~~~~V~e~P~~svgiAagvG~llG~Ll~ 92 (94)
T PF05957_consen 60 EAAEQTEDYVRENPWQSVGIAAGVGFLLGLLLR 92 (94)
T ss_pred HHHHHHHHHHHHChHHHHHHHHHHHHHHHHHHh
Confidence 333333333347889999999999999998865
No 33
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=34.26 E-value=34 Score=21.08 Aligned_cols=12 Identities=42% Similarity=0.531 Sum_probs=10.0
Q ss_pred eccHHHHHHHHH
Q 029467 161 VLDEEALAEKKA 172 (193)
Q Consensus 161 ~L~eE~~a~k~~ 172 (193)
.+|+|||.+++.
T Consensus 16 ~IseeEy~~~k~ 27 (31)
T PF09851_consen 16 EISEEEYEQKKA 27 (31)
T ss_pred CCCHHHHHHHHH
Confidence 589999999665
No 34
>COG4980 GvpP Gas vesicle protein [General function prediction only]
Probab=32.68 E-value=24 Score=28.44 Aligned_cols=28 Identities=14% Similarity=0.388 Sum_probs=24.7
Q ss_pred ccchhhhhHHhhhhhchhhhhhhchhcc
Q 029467 24 KERIIVPAILAGLVGGVSGLLSKHRKVH 51 (193)
Q Consensus 24 ~~rilip~l~AG~~GggaGll~~~~~~~ 51 (193)
.+++|++.+.-|++|+.++||-...++-
T Consensus 4 ~~~~l~G~liGgiiGa~aaLL~AP~sGk 31 (115)
T COG4980 4 GKDFLFGILIGGIIGAAAALLFAPKSGK 31 (115)
T ss_pred cchHHHHHHHHHHHHHHHHHHhCCcccH
Confidence 3689999999999999999999888763
No 35
>PF06897 DUF1269: Protein of unknown function (DUF1269); InterPro: IPR009200 There are currently no experimental data for members of this group or their homologues. However, these proteins are predicted to contain two or more transmembrane segments.
Probab=32.17 E-value=34 Score=26.44 Aligned_cols=52 Identities=31% Similarity=0.346 Sum_probs=26.9
Q ss_pred hhhhhhhhhhhhhhcCCC-CCchhHHHHHHHHhhhHHHHHhhhchh-hHHhHhhhcC
Q 029467 93 AIAGFGSGALLGRLQGGQ-RGALRYSVIFAVVGTTVDYATLRLAPI-IRNFRESHKD 147 (193)
Q Consensus 93 avaG~~SGa~lGrlqGG~-~~a~~yav~fA~vGtg~~~a~~k~~~~-~~~f~e~~~~ 147 (193)
|+.|.+-|.++|.|-+.| .|..-++.+.|+.|.-.|+. +++. ++...++++.
T Consensus 1 A~~G~~~G~LiGll~~~pl~G~~~GA~~Gal~G~l~d~g---I~d~~~~ev~~~L~~ 54 (102)
T PF06897_consen 1 ALSGALWGLLIGLLFGPPLLGAAVGAAAGALAGALSDYG---IDDEFIKEVGEALKP 54 (102)
T ss_pred CcchhHHHHHHHHHhhhHHHHHHHHHHHHHHHhHHhhCC---CCHHHHHHHHhhcCC
Confidence 456788888888887633 23333333333444333333 2222 5556666633
No 36
>PF10439 Bacteriocin_IIc: Bacteriocin class II with double-glycine leader peptide; InterPro: IPR019493 Bacteriocins are proteinaceous toxins produced by bacteria to inhibit the growth of similar or closely related strains. The producer bacteria are protected from the effects of their own bacteriocins by production of a specific immunity protein which is co-transcribed with the genes encoding the bacteriocins, e.g. IPR015046 from INTERPRO. The bacteriocins are structurally more specific than their immunity-protein counterparts. Typically, production of the bacteriocin gene is from within an operon carrying up to 6 genes including a typical two-component regulatory system (R and H), a small peptide pheromone (C), and a dedicated ABC transporter (A and -B) as well as an immunity protein []. The ABC transporter is thought to recognise the N termini of both the pheromone and the bacteriocins and to transport these peptides across the cytoplasmic membrane, concurrent with cleavage at the conserved double-glycine motif. Cleaved extracellular C can then bind to the sensor kinase, H, resulting in activation of R and up-regulation of the entire gene cluster via binding to consensus sequences within each promoter []. It seems likely that the whole regulon is carried on a transmissible plasmid which is passed between closely related Firmicute species since many clinical isolates from different Firmicutes can produce at least two bacteriocins, and the same bacteriocins can be produced by different species. The proteins in this entry include amylovorin-L, lactacin-F and salivaricin CRL 1328, all of them class IIb two-peptide bacteriocins.
Probab=31.61 E-value=41 Score=23.72 Aligned_cols=34 Identities=29% Similarity=0.296 Sum_probs=17.9
Q ss_pred CchhhhhhhhhhhhhhhhhcCCCCCchhHHHHHHHHhh
Q 029467 88 DLVNSAIAGFGSGALLGRLQGGQRGALRYSVIFAVVGT 125 (193)
Q Consensus 88 d~inSavaG~~SGa~lGrlqGG~~~a~~yav~fA~vGt 125 (193)
+.+..+++++++|+.++..-|.+ ..++..|++|.
T Consensus 24 ~~~~~~~~~~~~G~~~G~~~g~~----~g~~~Ga~~G~ 57 (65)
T PF10439_consen 24 NCVGGVGGGAAGGAAAGAAGGPP----VGAVAGAIVGA 57 (65)
T ss_pred HHHHHHHHHHHHHHHHhhhccch----hHHHHHHHHHH
Confidence 34455566666666666555544 44444444443
No 37
>PF08559 Cut8_C: Cut8 six-helix bundle; InterPro: IPR013868 In Schizosaccharomyces pombe (Fission yeast), Cut8 is a nuclear envelope protein that physically interacts with and tethers 26S proteasome in the nucleus resulting in the nuclear accumulation of proteasomes []. Cut8 is a proteasome substrate and amino terminal residues 1-72 are polyubiquitinated and function as a degron tag. Ubiquitination of the amino terminal is essential to the function of Cut8. Lysine residues in the amino terminal 72 amino acids of Cut8 are required for physical interaction with the proteasome. In fission yeast the function of Cut8 has been demonstrated to be regulated by ubiquitin-conjugating Rhp6/Ubc2/Rad6 and ligating enzymes Ubr1. Cut8 homologs have been identified in Drosophila melanogaster (Fruit fly), Anopheles gambiae (African malaria mosquito) and Dictyostelium discoideum (Slime mold). ; PDB: 3Q5W_A 3Q5X_A.
Probab=29.95 E-value=37 Score=27.66 Aligned_cols=18 Identities=33% Similarity=0.523 Sum_probs=16.4
Q ss_pred HHHHhhhchhhHHhHhhh
Q 029467 128 DYATLRLAPIIRNFRESH 145 (193)
Q Consensus 128 ~~a~~k~~~~~~~f~e~~ 145 (193)
||+.+|.++.+-.|++.+
T Consensus 30 dyaY~Rvk~~L~~F~~~L 47 (143)
T PF08559_consen 30 DYAYNRVKPHLLEFLKAL 47 (143)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHH
Confidence 999999999988888777
No 38
>PF05230 MASE2: MASE2 domain; InterPro: IPR007894 This domain of unknown function is often found adjacent to the GGDEF domain in bacteria (IPR000160 from INTERPRO).
Probab=29.11 E-value=50 Score=25.23 Aligned_cols=37 Identities=22% Similarity=0.305 Sum_probs=24.4
Q ss_pred HHHHhhcCCCCch-hhhhhhhhhhhhhhhhcCCCCCchhHHHHHH
Q 029467 78 VRVSRKTGPDDLV-NSAIAGFGSGALLGRLQGGQRGALRYSVIFA 121 (193)
Q Consensus 78 ~r~~R~t~pdd~i-nSavaG~~SGa~lGrlqGG~~~a~~yav~fA 121 (193)
.++-.++|..+++ +|+.+|+..+.+ .+|++|-.++.+
T Consensus 53 s~~p~~~E~~nLl~Da~~~G~wia~m-------~fn~lPS~~il~ 90 (91)
T PF05230_consen 53 SRDPYRAEQRNLLIDAAFGGFWIALM-------GFNPLPSVVILS 90 (91)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHH-------cCChHHHHHHHh
Confidence 3334445555555 888888888776 578888766553
No 39
>PF08858 IDEAL: IDEAL domain; InterPro: IPR014957 This entry represents the C-terminal domain of Bacteriophage SPP1, p90. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. his domain may also be referred to as the IDEAL domain, after the sequence of the most conserved region of the domain.; PDB: 3DO9_A.
Probab=28.04 E-value=1.1e+02 Score=19.75 Aligned_cols=20 Identities=25% Similarity=0.341 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHhhhc
Q 029467 171 KAREQKLYAQTQQALGKLRK 190 (193)
Q Consensus 171 ~~~eekl~~~~~r~i~kl~k 190 (193)
..++++|+.+||.+|..=.|
T Consensus 8 ~~~~~~L~~~ID~ALd~~D~ 27 (37)
T PF08858_consen 8 EFRKEQLLELIDEALDNRDK 27 (37)
T ss_dssp HHHHHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHHHHHHHcCCH
Confidence 36788999999999986444
No 40
>CHL00154 rpl29 ribosomal protein L29; Validated
Probab=27.65 E-value=79 Score=22.90 Aligned_cols=35 Identities=14% Similarity=0.208 Sum_probs=22.4
Q ss_pred CCCcceeccHHHHHHHH-HHHHHHHHHH-HHHHHhhh
Q 029467 155 EWSPIQVLDEEALAEKK-AREQKLYAQT-QQALGKLR 189 (193)
Q Consensus 155 ~WsPiq~L~eE~~a~k~-~~eekl~~~~-~r~i~kl~ 189 (193)
..+-|+.||.||+.++- +..++||..+ |.+.++|.
T Consensus 5 k~~elr~ls~~eL~~~l~elk~elf~LRfq~atgql~ 41 (67)
T CHL00154 5 KITDIIDLTDSEISEEIIKTKKELFDLRLKKATRQNF 41 (67)
T ss_pred CHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 34558899999998864 3445566443 56666554
No 41
>PF14962 AIF-MLS: Mitochondria Localisation Sequence; PDB: 1M6I_A.
Probab=26.22 E-value=22 Score=30.71 Aligned_cols=51 Identities=16% Similarity=0.068 Sum_probs=0.0
Q ss_pred CCchhHHHHHHHHhhhHHHHHhhhchhhHHhHhhhcCCCccccCCCCccee
Q 029467 111 RGALRYSVIFAVVGTTVDYATLRLAPIIRNFRESHKDGDWLKLPEWSPIQV 161 (193)
Q Consensus 111 ~~a~~yav~fA~vGtg~~~a~~k~~~~~~~f~e~~~~~~w~~~P~WsPiq~ 161 (193)
.|.+-|-|+...+-.|+-|++.-+++-...|.++|.+-+-..-.+|.|.+.
T Consensus 44 sN~~Y~l~vG~t~~gag~YaYkTv~~dq~Ry~eRi~~l~~r~k~e~~p~~~ 94 (180)
T PF14962_consen 44 SNMVYYLVVGVTVSGAGYYAYKTVKSDQARYNERISELKERPKAELKPAPP 94 (180)
T ss_dssp ---------------------------------------------------
T ss_pred ceEEEEEEECeEEEeeEEEEEEeecchhHHHHHHHHHHhhcCccccCCccc
Confidence 666666666666666999999999988888888883322222245666443
No 42
>PF05680 ATP-synt_E: ATP synthase E chain; InterPro: IPR008386 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunit E found in the F0 complex of F-ATPases. Mitochondrial F-ATPases can associate together to form dimeric or oligomeric complexes, such interactions involving the physical association of membrane-embedded F0 complexes. In yeast, the F0 complex E subunit appears to play an important role in supporting F-ATPase dimerisation. This subunit is anchored to the inner mitochondrial membrane via its N-terminal region, which is involved in stabilising subunits G and K of the F0 complex. The C-terminal region of subunit E is hydrophilic, protruding into the intermembrane space where it can also help stabilise the F-ATPase dimer complex []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)
Probab=25.31 E-value=3e+02 Score=20.79 Aligned_cols=22 Identities=32% Similarity=0.498 Sum_probs=14.5
Q ss_pred CchhHHHHHHHHhhhHHHHHhhhchh
Q 029467 112 GALRYSVIFAVVGTTVDYATLRLAPI 137 (193)
Q Consensus 112 ~a~~yav~fA~vGtg~~~a~~k~~~~ 137 (193)
|.+||+ ++|.|+-|+.-+.+.-
T Consensus 11 nv~RyS----aL~~Gv~YG~~~~~~L 32 (86)
T PF05680_consen 11 NVLRYS----ALGLGVVYGAYHQRYL 32 (86)
T ss_pred HHHHHH----HHHHHHHHHHHHHHHH
Confidence 345554 5678888988765543
No 43
>PHA00276 phage lambda Rz-like lysis protein
Probab=24.59 E-value=79 Score=26.56 Aligned_cols=17 Identities=18% Similarity=0.220 Sum_probs=12.8
Q ss_pred eeccHHHHHHHHHHHHH
Q 029467 160 QVLDEEALAEKKAREQK 176 (193)
Q Consensus 160 q~L~eE~~a~k~~~eek 176 (193)
+++.+|=.+++++.|..
T Consensus 34 ~~~~~e~~~~~~a~~~~ 50 (144)
T PHA00276 34 QEVQNEYVKKVEATADT 50 (144)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 67888888887776663
No 44
>PF10406 TAF8_C: Transcription factor TFIID complex subunit 8 C-term ; InterPro: IPR019473 This entry represents the C-terminal region of subunit 8 (also known as TAF8) of the transcription factor TFIID []. The adjacent N-terminal region generally contains a histone fold domain (IPR006565 from INTERPRO). This subunit is one of the key subunits of TFIID, being one of several general cofactors which are typically involved in gene activation to bring about the communication between gene-specific transcription factors and components of the general transcription machinery [].
Probab=24.14 E-value=1.5e+02 Score=20.18 Aligned_cols=35 Identities=31% Similarity=0.411 Sum_probs=15.9
Q ss_pred ccccCCCCcceeccHHHHHHHHHHHHHHHHHHHHHHHhh
Q 029467 150 WLKLPEWSPIQVLDEEALAEKKAREQKLYAQTQQALGKL 188 (193)
Q Consensus 150 w~~~P~WsPiq~L~eE~~a~k~~~eekl~~~~~r~i~kl 188 (193)
+...|.+..- .-|.+... ++..||....+ ++|-+|
T Consensus 16 Y~~Tp~~~~~-~~d~~~~r-~~~~~~~r~~e--~aL~~l 50 (51)
T PF10406_consen 16 YKRTPIYNER-ETDPKKIR-EKAAEQSRLAE--KALRKL 50 (51)
T ss_pred cccCCCCCCC-CCCHHHHH-HHHHHHHHHHH--HHHHHh
Confidence 3444555321 22444433 34445555544 666554
No 45
>PF05120 GvpG: Gas vesicle protein G ; InterPro: IPR007804 Gas vesicles are intracellular, protein-coated, and hollow organelles found in cyanobacteria and halophilic archaea. They are permeable to ambient gases by diffusion and provide buoyancy, enabling cells to move upwards in water to access oxygen and/or light. Proteins containing this family are involved in the formation of gas vesicles [].
Probab=24.10 E-value=1.2e+02 Score=22.87 Aligned_cols=18 Identities=28% Similarity=0.470 Sum_probs=13.7
Q ss_pred eccHHHHHHHHHHHHHHHHHH
Q 029467 161 VLDEEALAEKKAREQKLYAQT 181 (193)
Q Consensus 161 ~L~eE~~a~k~~~eekl~~~~ 181 (193)
-+|+|+|.+ +|+.|+..+
T Consensus 48 EIseeEf~~---~E~eLL~rL 65 (79)
T PF05120_consen 48 EISEEEFER---REDELLDRL 65 (79)
T ss_pred CCCHHHHHH---HHHHHHHHH
Confidence 489999987 667777665
No 46
>COG0225 MsrA Peptide methionine sulfoxide reductase [Posttranslational modification, protein turnover, chaperones]
Probab=23.86 E-value=27 Score=29.98 Aligned_cols=18 Identities=11% Similarity=0.416 Sum_probs=14.2
Q ss_pred hhhhhhhhhhHHHHHHHH
Q 029467 64 LSIVTACYCGAREFVRVS 81 (193)
Q Consensus 64 ~~Iv~scf~garE~~r~~ 81 (193)
..++++||||+.+.-+..
T Consensus 9 a~fagGCFWg~E~~f~~i 26 (174)
T COG0225 9 AYFAGGCFWGVEAYFEQI 26 (174)
T ss_pred EEEeccCccchHHHHhhC
Confidence 357899999999877663
No 47
>PF08178 GnsAB: GnsA/GnsB family; InterPro: IPR012563 This family consists of the GnsA/GnsB family. GnsA and GnsB are multicopy suppressors of the secG null mutation. These proteins participate in the synthesis of phospholipids, suggesting the functional relationship between SecG and membrane phospholipids. Over expression of gnsA and gnsB causes a remarkable increase in the unsaturated fatty acid content. However, the gnsA-gnsB double null mutant exhibits no effect. Both proteins are predicted to possess a helix-turn-helix structure [].
Probab=23.72 E-value=1.5e+02 Score=21.37 Aligned_cols=27 Identities=26% Similarity=0.411 Sum_probs=20.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 029467 163 DEEALAEKKAREQKLYAQTQQALGKLRKE 191 (193)
Q Consensus 163 ~eE~~a~k~~~eekl~~~~~r~i~kl~k~ 191 (193)
++|++.+ -.|+++-+.|..-|.+|||.
T Consensus 2 ~~e~lkk--k~EeeI~~lI~kKi~ELrk~ 28 (54)
T PF08178_consen 2 NIEELKK--KAEEEISALITKKIAELRKK 28 (54)
T ss_pred CHHHHHH--HHHHHHHHHHHHHHHHhccc
Confidence 5788877 45677777788899999983
No 48
>PF05818 TraT: Enterobacterial TraT complement resistance protein; InterPro: IPR008874 The traT gene is one of the F factor transfer genes and encodes an outer membrane protein which is involved in interactions between Escherichia coli and its surroundings []. The protein plays a role in preventing unproductive conjugation between bacteria carrying like plasmids.; GO: 0046999 regulation of conjugation, 0019867 outer membrane
Probab=23.70 E-value=59 Score=28.68 Aligned_cols=50 Identities=14% Similarity=0.146 Sum_probs=34.5
Q ss_pred CCchhhhhhhhhhhhhhhhhcCCCCCchhHHHHH-HHHhhhHHHHHhhhch
Q 029467 87 DDLVNSAIAGFGSGALLGRLQGGQRGALRYSVIF-AVVGTTVDYATLRLAP 136 (193)
Q Consensus 87 dd~inSavaG~~SGa~lGrlqGG~~~a~~yav~f-A~vGtg~~~a~~k~~~ 136 (193)
++.+++-.+|.+.|+.+|---|+.-+--.++++. .++|..+.+++.++-+
T Consensus 80 ~~~l~~G~gga~~Ga~~G~~~g~~~~~~~g~~~G~GlaGalig~~ada~v~ 130 (215)
T PF05818_consen 80 QSALAGGYGGALAGAATGAAIGAYNSGSAGAAIGAGLAGALIGMIADAMVE 130 (215)
T ss_pred HHHhhccchhHHHHhHHhhhhccccCCccchhhhhhHHHhHHHHHHhhhcc
Confidence 3445555666666666666666555555677777 7888889999988763
No 49
>PF12597 DUF3767: Protein of unknown function (DUF3767); InterPro: IPR022533 This group of proteins includes mitochodrial cytochrome c oxidase proteins [], and some transmembrane domain-containing proteins of unknown function known as FAM36A. Proteins in this family are typically between 112 and 199 amino acids in length.
Probab=23.61 E-value=1.9e+02 Score=22.93 Aligned_cols=49 Identities=24% Similarity=0.323 Sum_probs=28.3
Q ss_pred CCchhhhhhhhhhhhhhhhhcCCCCCchhHHHHHHHHhhhHHHHHhhhc
Q 029467 87 DDLVNSAIAGFGSGALLGRLQGGQRGALRYSVIFAVVGTTVDYATLRLA 135 (193)
Q Consensus 87 dd~inSavaG~~SGa~lGrlqGG~~~a~~yav~fA~vGtg~~~a~~k~~ 135 (193)
|.++..+.+|++.|++--.+.+-+..+.-.+|.-=++++-+.|-+=++.
T Consensus 42 ~slL~Gi~~G~~vG~~~fl~~~~~~~A~nwavgsF~l~s~~~we~Cr~~ 90 (118)
T PF12597_consen 42 DSLLYGIAGGFGVGGLRFLFTSNPRKAANWAVGSFFLGSLGSWEYCRYN 90 (118)
T ss_pred HHHHHHHHHHHHHHhhhhcccCCCccchhhhhHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555566566666666666666666665554444
No 50
>PF06738 DUF1212: Protein of unknown function (DUF1212); InterPro: IPR010619 This entry represents a predicted domain found within a number of hypothetical proteins of unknown function found in eukaryotes, bacteria and archaea. Some of these sequences are predicted to be membrane proteins.
Probab=23.27 E-value=2.2e+02 Score=22.85 Aligned_cols=48 Identities=19% Similarity=0.148 Sum_probs=29.7
Q ss_pred CCchhhhhhhhhhhhhhhhhcCCCCCchhHHHHHHHHhhhHHHHHhhhc
Q 029467 87 DDLVNSAIAGFGSGALLGRLQGGQRGALRYSVIFAVVGTTVDYATLRLA 135 (193)
Q Consensus 87 dd~inSavaG~~SGa~lGrlqGG~~~a~~yav~fA~vGtg~~~a~~k~~ 135 (193)
..|+.-...|+.+++ ++.+-||....+-.+.+.++++..++....|++
T Consensus 102 ~~~~~~l~~~l~~~~-fa~lfgg~~~~~~~a~i~g~~~~~~~~~~~r~~ 149 (193)
T PF06738_consen 102 PPWLVILAAGLASAA-FALLFGGSWIDMIVAFILGLLVGLLRQLLSRRR 149 (193)
T ss_pred CHHHHHHHHHHHHHH-HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 456666666666555 455566676666666666666666666655554
No 51
>PF09210 DUF1957: Domain of unknown function (DUF1957); InterPro: IPR015293 This C-terminal domain is found in a set of hypothetical bacterial proteins that have a N-terminal domain related to the glycoside hydrolase family 57 family GH57 from CAZY. The exact function of this domain has not, as yet, been defined. ; PDB: 3N98_A 3N8T_A 3N92_A 1UFA_A 3P0B_A.
Probab=23.09 E-value=59 Score=25.24 Aligned_cols=22 Identities=32% Similarity=0.478 Sum_probs=19.6
Q ss_pred hhhHHHHHhhhchhhHHhHhhh
Q 029467 124 GTTVDYATLRLAPIIRNFRESH 145 (193)
Q Consensus 124 Gtg~~~a~~k~~~~~~~f~e~~ 145 (193)
||+.+||.+++++-+.+|.+..
T Consensus 50 gta~~YA~~R~~~Hl~rF~~L~ 71 (102)
T PF09210_consen 50 GTAVEYARERFKEHLNRFWRLY 71 (102)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988643
No 52
>PF08560 DUF1757: Protein of unknown function (DUF1757); InterPro: IPR013869 This entry shows proteins that are about 150 amino acids in length and have no known function.
Probab=22.94 E-value=1.7e+02 Score=24.40 Aligned_cols=53 Identities=23% Similarity=0.321 Sum_probs=31.4
Q ss_pred hhhhhhhhHHHHHHHHhhcCCCCchhhhhhhhhhhhhhhhhcCCCCCchhHHHHHHHHhhhHHHHHhhh
Q 029467 66 IVTACYCGAREFVRVSRKTGPDDLVNSAIAGFGSGALLGRLQGGQRGALRYSVIFAVVGTTVDYATLRL 134 (193)
Q Consensus 66 Iv~scf~garE~~r~~R~t~pdd~inSavaG~~SGa~lGrlqGG~~~a~~yav~fA~vGtg~~~a~~k~ 134 (193)
++||++++---..-..++-+|..++|+.+=+.-.| +++++++|.-+-|+..+-
T Consensus 40 ~lGsl~~~Pi~~~~~~~~~~~~~~~~~~~~~~~~G----------------~l~G~~~gp~m~~~rmr~ 92 (155)
T PF08560_consen 40 FLGSLIVGPIYRLLKQPRLNPKELTNRFVKGGRNG----------------ALAGAVLGPVMTYARMRG 92 (155)
T ss_pred HHHHHHhHHHHHHHhCccccHHHHHHHHHHHHHHh----------------HHHHHHHHHHHHHHHHhc
Confidence 45566555443222223335777777665554444 566677777788888777
No 53
>PF08819 DUF1802: Domain of unknown function (DUF1802); InterPro: IPR014923 The function of this family is unknown. This region is found associated with a IPR007560 from INTERPRO suggesting they could be part of a restriction modification system.
Probab=22.57 E-value=67 Score=27.22 Aligned_cols=24 Identities=33% Similarity=0.645 Sum_probs=18.6
Q ss_pred CCccccCCCCcce----eccHHHHHHHH
Q 029467 148 GDWLKLPEWSPIQ----VLDEEALAEKK 171 (193)
Q Consensus 148 ~~w~~~P~WsPiq----~L~eE~~a~k~ 171 (193)
+||+.||++-..+ ||||++++++.
T Consensus 147 ~SWv~L~~~i~~~~~~PVlsD~~f~~~~ 174 (177)
T PF08819_consen 147 KSWVDLPEPISPEGSKPVLSDEEFAQRA 174 (177)
T ss_pred ceeEECCCCcccCCCCCcCCHHHHHHHH
Confidence 7999999873333 79999999844
No 54
>PF07780 Spb1_C: Spb1 C-terminal domain; InterPro: IPR012920 This presumed domain is found at the C terminus of a family of FtsJ-like methyltransferases. Members of this family are involved in 60S ribosomal biogenesis, for example P25582 from SWISSPROT []. ; GO: 0008168 methyltransferase activity, 0006364 rRNA processing, 0005634 nucleus
Probab=22.47 E-value=1.1e+02 Score=27.07 Aligned_cols=18 Identities=39% Similarity=0.765 Sum_probs=13.3
Q ss_pred ccCCCC---------cceeccHHHHHH
Q 029467 152 KLPEWS---------PIQVLDEEALAE 169 (193)
Q Consensus 152 ~~P~Ws---------Piq~L~eE~~a~ 169 (193)
.||+|| |.--+|.|+.+.
T Consensus 74 ~LP~WF~eDE~kH~k~~~Pvtke~v~~ 100 (215)
T PF07780_consen 74 GLPDWFVEDEKKHNKPQLPVTKEEVAE 100 (215)
T ss_pred CCchhHHHHHHhhcCCCCCCCHHHHHH
Confidence 589997 666677777665
No 55
>COG4291 Predicted membrane protein [Function unknown]
Probab=22.25 E-value=3.9e+02 Score=24.10 Aligned_cols=98 Identities=18% Similarity=0.126 Sum_probs=61.6
Q ss_pred Hhhhhhchhhhhhhchhcccchhhhhhhhhhhhhhhhhhh-h-------HHHHHHHHhhcCCCCchhhhhhhhhh-----
Q 029467 33 LAGLVGGVSGLLSKHRKVHGLANISATYATNLSIVTACYC-G-------AREFVRVSRKTGPDDLVNSAIAGFGS----- 99 (193)
Q Consensus 33 ~AG~~GggaGll~~~~~~~~~~~~aa~~a~N~~Iv~scf~-g-------arE~~r~~R~t~pdd~inSavaG~~S----- 99 (193)
....+|+..+++..+.-.- ..+...+.|.|.++-... + .+.+.+..|++ ||....+.+=...
T Consensus 25 ~~a~lg~vlall~~~~~~~---~~a~~igan~ff~~yl~L~~~~lp~~tp~~l~a~Ar~~--Dep~~~i~avtlvav~vs 99 (228)
T COG4291 25 AIAALGGVLALLLALALSR---PLAILIGANLFFLAYLLLAVLRLPRLTPSYLKAHARRE--DEPAAAIFAVTLVAVIVS 99 (228)
T ss_pred HHHHHHHHHHHHHHHhcch---hHHHHHhHHHHHHHHHHHHHHhcccCCHHHHHHhcccc--CChHHHHHHHHHHHHHHH
Confidence 4456677777777766542 334567778544332222 2 23677777877 7776655554443
Q ss_pred --hhhhhhhcCCCCCchhHHHHHHHH---------hhhHHHHHhhhc
Q 029467 100 --GALLGRLQGGQRGALRYSVIFAVV---------GTTVDYATLRLA 135 (193)
Q Consensus 100 --Ga~lGrlqGG~~~a~~yav~fA~v---------Gtg~~~a~~k~~ 135 (193)
+.++..=|-++-+.+-+++.|+-| =++++||-.-|+
T Consensus 100 lVslf~~ln~a~~~~~v~l~~a~~sV~lgWltIh~m~alHYAhlYw~ 146 (228)
T COG4291 100 LVSLFLLLNQANSGQTVHLGFALASVALGWLTIHMMTALHYAHLYWR 146 (228)
T ss_pred HHHHHHHHHhcCCCCeeehhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344455577777889999988877 367888877666
No 56
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=22.07 E-value=3.3e+02 Score=21.47 Aligned_cols=18 Identities=33% Similarity=0.447 Sum_probs=7.6
Q ss_pred HHHHHHHhhhHHHHHhhh
Q 029467 117 SVIFAVVGTTVDYATLRL 134 (193)
Q Consensus 117 av~fA~vGtg~~~a~~k~ 134 (193)
+++..+||..+-|...++
T Consensus 2 ~~i~lvvG~iiG~~~~r~ 19 (128)
T PF06295_consen 2 AIIGLVVGLIIGFLIGRL 19 (128)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 344444444444444433
No 57
>PF07131 DUF1382: Protein of unknown function (DUF1382); InterPro: IPR009814 This entry is represented by Bacteriophage lambda, Xis. This entry overlaps with IPR009750, both representing lambda Xis. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical Escherichia coli and Bacteriophage lambda-like proteins of around 60 residues in length. The function of this family is unknown.
Probab=22.02 E-value=1.1e+02 Score=22.39 Aligned_cols=15 Identities=27% Similarity=0.601 Sum_probs=13.1
Q ss_pred CCCcceeccHHHHHH
Q 029467 155 EWSPIQVLDEEALAE 169 (193)
Q Consensus 155 ~WsPiq~L~eE~~a~ 169 (193)
+.-||-+.||||+..
T Consensus 25 RFVpiPv~~dee~~~ 39 (61)
T PF07131_consen 25 RFVPIPVVTDEEFHT 39 (61)
T ss_pred eeeccccccHHHHHH
Confidence 567999999999876
No 58
>PF03469 XH: XH domain; InterPro: IPR005379 The XH (rice gene X Homology) domain is found in a family of plant proteins including Oryza sativa (Rice) Q9SBW2 from SWISSPROT. The molecular function of these proteins is unknown, however these proteins usually contain an XS domain (IPR005380 from INTERPRO) that is also found in the PTGS protein SGS3. As the XS and XH domains are fused in most of these proteins, these two domains may interact. The XH domain is between 124 and 145 residues in length and contains a conserved glutamate residue that may be functionally important [].
Probab=21.54 E-value=2.1e+02 Score=23.52 Aligned_cols=37 Identities=35% Similarity=0.734 Sum_probs=21.9
Q ss_pred CCCCcceec------------cHHHHHH-HHHHHHHHHHHHHHHHHhhhc
Q 029467 154 PEWSPIQVL------------DEEALAE-KKAREQKLYAQTQQALGKLRK 190 (193)
Q Consensus 154 P~WsPiq~L------------~eE~~a~-k~~~eekl~~~~~r~i~kl~k 190 (193)
|+|-||++. |||.|.+ |.+.=+..|...-.+|-+++.
T Consensus 42 p~WhPFkvv~~~g~~~evi~edDekL~~Lk~e~Geevy~aV~~Al~E~nE 91 (132)
T PF03469_consen 42 PEWHPFKVVTVDGKEKEVIDEDDEKLQELKEEWGEEVYNAVTKALLEINE 91 (132)
T ss_pred CCccceEEeccCCcccccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999873 4444543 224445566555566666653
No 59
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=21.00 E-value=2e+02 Score=27.12 Aligned_cols=52 Identities=21% Similarity=0.195 Sum_probs=31.2
Q ss_pred hhchhhHHhHhhhcCCCccccCCC-CcceeccHHHHHHHHH----HHHHHHHHHHHHHHhhhc
Q 029467 133 RLAPIIRNFRESHKDGDWLKLPEW-SPIQVLDEEALAEKKA----REQKLYAQTQQALGKLRK 190 (193)
Q Consensus 133 k~~~~~~~f~e~~~~~~w~~~P~W-sPiq~L~eE~~a~k~~----~eekl~~~~~r~i~kl~k 190 (193)
-++|+..+|.+.+ -+|+| .+++.||.|++.++-. .++++=+++++++.++|.
T Consensus 353 ~Y~~K~~~~~~~l------g~~~~~~~~~~l~~~~Li~~v~~~~~~r~~~~~~l~~~v~~~r~ 409 (426)
T PRK10017 353 NYEHKSAGIMQQL------GLPEMAIDIRHLLDGSLQAMVADTLGQLPALNARLAEAVSRERQ 409 (426)
T ss_pred eehHHHHHHHHHc------CCccEEechhhCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence 3456667777532 25788 8999999988876321 112222445566666664
No 60
>PF04226 Transgly_assoc: Transglycosylase associated protein; InterPro: IPR007341 This bacterial protein is predicted to be an integral membrane protein. Some family members have been annotated as transglycosylase-associated proteins, but no experimental evidence is provided. This family was annotated based on the information in P76011 from SWISSPROT.; GO: 0016021 integral to membrane
Probab=20.76 E-value=1.3e+02 Score=20.20 Aligned_cols=26 Identities=31% Similarity=0.238 Sum_probs=16.8
Q ss_pred hhhcCCCCCchhHHHHHHHHhhhHHH
Q 029467 104 GRLQGGQRGALRYSVIFAVVGTTVDY 129 (193)
Q Consensus 104 GrlqGG~~~a~~yav~fA~vGtg~~~ 129 (193)
.+.-|...+....++++|++|+-+--
T Consensus 15 ~~~lg~~~~~~~~~~i~aviGAiill 40 (48)
T PF04226_consen 15 FGLLGINGGGSWGSFIVAVIGAIILL 40 (48)
T ss_pred HHHhcccCCchHHHHHHHHHHHHHHH
Confidence 33333355667888888888876543
No 61
>KOG0758 consensus Mitochondrial carnitine-acylcarnitine carrier protein [Energy production and conversion]
Probab=20.64 E-value=1.1e+02 Score=28.37 Aligned_cols=86 Identities=26% Similarity=0.309 Sum_probs=54.6
Q ss_pred hhhHHhhhhhchhhhhhhchhcccchhhhhhhhhhhhhhhhhhhhHHHHHHHHhhcCCCCchhhhhhhhhhhhhhhhhcC
Q 029467 29 VPAILAGLVGGVSGLLSKHRKVHGLANISATYATNLSIVTACYCGAREFVRVSRKTGPDDLVNSAIAGFGSGALLGRLQG 108 (193)
Q Consensus 29 ip~l~AG~~GggaGll~~~~~~~~~~~~aa~~a~N~~Iv~scf~garE~~r~~R~t~pdd~inSavaG~~SGa~lGrlqG 108 (193)
+..++||++||.++++++|+=-- +.----++.++. |-++.+-++..-++|- +-|+-=|...-.|-=
T Consensus 14 ~kdf~AG~~gG~~~vlVGhPfDT-vKVRlQt~~~~~------y~~~~~c~~~t~~~Eg-------~~GfYkGm~~Pligv 79 (297)
T KOG0758|consen 14 LKDFVAGGVGGAAQVLVGHPFDT-VKVRLQTQNTPV------YKGTLDCVKKTLKNEG-------VKGFYKGMTAPLIGV 79 (297)
T ss_pred HHHHHHhhhhhhhhhhccCCccc-eEEeeeccCCCC------cccHHHHHHHHHHhcc-------hhhhhcccccchhhh
Confidence 67789999999999999998310 000000111222 8899999998888854 356666666555544
Q ss_pred CCCCchhHHHHHHHHhhhHHHHHh
Q 029467 109 GQRGALRYSVIFAVVGTTVDYATL 132 (193)
Q Consensus 109 G~~~a~~yav~fA~vGtg~~~a~~ 132 (193)
++ -.|++|++-+.+--|-..
T Consensus 80 ~~----~~sv~F~~y~~~kr~~~~ 99 (297)
T KOG0758|consen 80 GP----INSVLFGVYGQGKRFLQK 99 (297)
T ss_pred hh----hheehhhhHHHHHHHHhc
Confidence 44 566777776666555443
No 62
>PF08295 Sin3_corepress: Sin3 family co-repressor; InterPro: IPR013194 This domain is found on transcriptional regulators. It forms interactions with histone deacetylases [].
Probab=20.27 E-value=79 Score=24.62 Aligned_cols=11 Identities=36% Similarity=1.344 Sum_probs=9.6
Q ss_pred CCCccccCCCC
Q 029467 147 DGDWLKLPEWS 157 (193)
Q Consensus 147 ~~~w~~~P~Ws 157 (193)
++.|++.|.|+
T Consensus 33 ND~wvs~p~~s 43 (101)
T PF08295_consen 33 NDTWVSVPSWS 43 (101)
T ss_pred CCEEEEeCCcc
Confidence 66899999996
Done!