Query 029467
Match_columns 193
No_of_seqs 19 out of 21
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 22:05:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029467.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029467hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3twe_A Alpha4H; unknown functi 32.8 42 0.0015 20.0 2.9 11 181-191 13-23 (27)
2 2l2t_A Receptor tyrosine-prote 30.8 16 0.00053 24.0 0.8 16 29-44 9-24 (44)
3 3he5_A Synzip1; heterodimeric 29.1 81 0.0028 20.9 4.1 28 164-191 19-46 (49)
4 1r73_A TM1492, 50S ribosomal p 24.1 60 0.0021 22.2 2.9 32 158-189 5-38 (66)
5 2rlw_A PLNF; toxin; NMR {Lacto 24.0 6.4 0.00022 24.6 -1.9 18 83-100 17-34 (34)
6 2ks1_B Epidermal growth factor 23.4 14 0.00049 24.1 -0.4 16 29-44 10-25 (44)
7 3r8s_Y 50S ribosomal protein L 23.2 44 0.0015 22.7 2.1 32 158-189 5-38 (63)
8 3v2d_2 50S ribosomal protein L 22.0 55 0.0019 22.9 2.4 30 159-188 13-44 (72)
9 2y0m_B MALE-specific lethal 1 21.5 48 0.0016 24.0 2.1 14 157-170 29-42 (74)
10 3j21_W 50S ribosomal protein L 20.0 75 0.0026 22.2 2.8 29 159-187 6-36 (72)
No 1
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=32.83 E-value=42 Score=19.96 Aligned_cols=11 Identities=55% Similarity=0.661 Sum_probs=9.1
Q ss_pred HHHHHHhhhcc
Q 029467 181 TQQALGKLRKE 191 (193)
Q Consensus 181 ~~r~i~kl~k~ 191 (193)
+|.+|.||||.
T Consensus 13 lqerlrklrkk 23 (27)
T 3twe_A 13 LQERLRKLRKK 23 (27)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77899999873
No 2
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=30.82 E-value=16 Score=24.02 Aligned_cols=16 Identities=44% Similarity=0.762 Sum_probs=13.4
Q ss_pred hhhHHhhhhhchhhhh
Q 029467 29 VPAILAGLVGGVSGLL 44 (193)
Q Consensus 29 ip~l~AG~~GggaGll 44 (193)
+|++++||+||.++++
T Consensus 9 ~~aIA~gVVgGv~~v~ 24 (44)
T 2l2t_A 9 TPLIAAGVIGGLFILV 24 (44)
T ss_dssp SHHHHHHHHHHHHHHH
T ss_pred cceEEEeehHHHHHHH
Confidence 5789999999988865
No 3
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=29.06 E-value=81 Score=20.94 Aligned_cols=28 Identities=29% Similarity=0.472 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 029467 164 EEALAEKKAREQKLYAQTQQALGKLRKE 191 (193)
Q Consensus 164 eE~~a~k~~~eekl~~~~~r~i~kl~k~ 191 (193)
+|-+.+|.-+.+.|.+.+...|..|||.
T Consensus 19 netlkkknlhkkdliaylekeianlrkk 46 (49)
T 3he5_A 19 NETLKKKNLHKKDLIAYLEKEIANLRKK 46 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 5667777788888999999999999983
No 4
>1r73_A TM1492, 50S ribosomal protein L29; ribosome, structural genomics, PSI, protein structure initiative, joint center for structural genomics; NMR {Thermotoga maritima} SCOP: a.2.2.1
Probab=24.06 E-value=60 Score=22.24 Aligned_cols=32 Identities=22% Similarity=0.399 Sum_probs=20.4
Q ss_pred cceeccHHHHHHHH-HHHHHHHHHH-HHHHHhhh
Q 029467 158 PIQVLDEEALAEKK-AREQKLYAQT-QQALGKLR 189 (193)
Q Consensus 158 Piq~L~eE~~a~k~-~~eekl~~~~-~r~i~kl~ 189 (193)
-|+.+|.||+.++- +..+.||..+ |.+.++|.
T Consensus 5 elr~~s~~EL~~~l~elk~ELf~LR~q~atgql~ 38 (66)
T 1r73_A 5 ELRNYTDEELKNLLEEKKRQLMELRFQLAMGQLK 38 (66)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHHHHHHccCcc
Confidence 47889999998863 3444566443 56666653
No 5
>2rlw_A PLNF; toxin; NMR {Lactobacillus plantarum}
Probab=23.97 E-value=6.4 Score=24.63 Aligned_cols=18 Identities=50% Similarity=0.754 Sum_probs=14.6
Q ss_pred hcCCCCchhhhhhhhhhh
Q 029467 83 KTGPDDLVNSAIAGFGSG 100 (193)
Q Consensus 83 ~t~pdd~inSavaG~~SG 100 (193)
+.+|.||+-|++-||+-|
T Consensus 17 avgpadwvisavrgfihg 34 (34)
T 2rlw_A 17 AVGPADWVISAVRGFIHG 34 (34)
T ss_dssp HHHHHHHHHHHHHHHHCC
T ss_pred ccChHHHHHHHHHhhccC
Confidence 457889999999998754
No 6
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=23.43 E-value=14 Score=24.09 Aligned_cols=16 Identities=44% Similarity=0.800 Sum_probs=12.8
Q ss_pred hhhHHhhhhhchhhhh
Q 029467 29 VPAILAGLVGGVSGLL 44 (193)
Q Consensus 29 ip~l~AG~~GggaGll 44 (193)
+|++++||+||.++++
T Consensus 10 ~~~IA~gVVgGv~~~~ 25 (44)
T 2ks1_B 10 IPSIATGMVGALLLLL 25 (44)
T ss_dssp SSSSTHHHHHHHHHHH
T ss_pred cceEEeehhHHHHHHH
Confidence 5778899999888765
No 7
>3r8s_Y 50S ribosomal protein L29; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_W 1p86_W 1vs8_X 1vs6_X 2aw4_X 2awb_X 1vt2_Y 2i2v_Y 2j28_X 2i2t_Y* 2qao_X* 2qba_X* 2qbc_X* 2qbe_X 2qbg_X 2qbi_X* 2qbk_X* 2qov_X 2qox_X 2qoz_X* ...
Probab=23.16 E-value=44 Score=22.73 Aligned_cols=32 Identities=19% Similarity=0.209 Sum_probs=19.9
Q ss_pred cceeccHHHHHHHH-HHHHHHHHHH-HHHHHhhh
Q 029467 158 PIQVLDEEALAEKK-AREQKLYAQT-QQALGKLR 189 (193)
Q Consensus 158 Piq~L~eE~~a~k~-~~eekl~~~~-~r~i~kl~ 189 (193)
-|+.+|.||+.++- +..+.||..+ |.+.++|.
T Consensus 5 elr~~s~~EL~~~l~elk~Elf~LR~q~atgql~ 38 (63)
T 3r8s_Y 5 ELREKSVEELNTELLNLLREQFNLRMQAASGQLQ 38 (63)
T ss_dssp GTTSCHHHHHHHHHHHHTHHHHHHHHHHHTTCCS
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 37789999998863 3344555443 55655553
No 8
>3v2d_2 50S ribosomal protein L29; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_W 1vsa_W 2j03_2 2jl6_2 2jl8_2 2v47_2 2v49_2 2wdi_2 2wdj_2 2wdl_2 2wdn_2 2wh2_2 2wh4_2 2wrj_2 2wrl_2 2wro_2 2wrr_2 2x9s_2 2x9u_2 2xg0_2 ...
Probab=21.98 E-value=55 Score=22.91 Aligned_cols=30 Identities=20% Similarity=0.379 Sum_probs=19.1
Q ss_pred ceeccHHHHHHH-HHHHHHHHHHH-HHHHHhh
Q 029467 159 IQVLDEEALAEK-KAREQKLYAQT-QQALGKL 188 (193)
Q Consensus 159 iq~L~eE~~a~k-~~~eekl~~~~-~r~i~kl 188 (193)
|+.+|.||+.++ .+..+.||..+ |.+.++|
T Consensus 13 lr~~s~eEL~~~L~elk~ELf~LR~q~atgql 44 (72)
T 3v2d_2 13 ARKLSPVELEKLVREKKRELMELRFQASIGQL 44 (72)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 677899999886 33444555443 5666655
No 9
>2y0m_B MALE-specific lethal 1 homolog; transcription, chromatin, X chromosome, MSL complex; HET: ALY ACO; 2.70A {Mus musculus}
Probab=21.52 E-value=48 Score=23.95 Aligned_cols=14 Identities=14% Similarity=0.451 Sum_probs=11.5
Q ss_pred CcceeccHHHHHHH
Q 029467 157 SPIQVLDEEALAEK 170 (193)
Q Consensus 157 sPiq~L~eE~~a~k 170 (193)
.+|-.|||+.|.+.
T Consensus 29 ~~~E~LsD~~F~kR 42 (74)
T 2y0m_B 29 DILENLDDSVFSKR 42 (74)
T ss_dssp CCCCCCCHHHHHHH
T ss_pred cCcccCCHHHHHHH
Confidence 57789999999873
No 10
>3j21_W 50S ribosomal protein L29P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=19.95 E-value=75 Score=22.19 Aligned_cols=29 Identities=17% Similarity=0.224 Sum_probs=18.4
Q ss_pred ceeccHHHHHHHH-HHHHHHHHHH-HHHHHh
Q 029467 159 IQVLDEEALAEKK-AREQKLYAQT-QQALGK 187 (193)
Q Consensus 159 iq~L~eE~~a~k~-~~eekl~~~~-~r~i~k 187 (193)
|+.+|+||+.++- +..+.||..+ |.+.++
T Consensus 6 lr~~s~~EL~~~L~elk~ELf~LR~q~atgq 36 (72)
T 3j21_W 6 IREMSIEEIDAKIRELRLQLAKERGLLTMGT 36 (72)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HhhCCHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 6778999998863 3444555433 556655
Done!