Query 029467
Match_columns 193
No_of_seqs 19 out of 21
Neff 3.3
Searched_HMMs 13730
Date Mon Mar 25 22:05:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029467.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/029467hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1tjla1 a.2.14.1 (A:7-110) Dna 32.5 16 0.0012 25.5 3.2 23 170-192 82-104 (104)
2 d1ciia1 f.1.1.1 (A:451-624) Co 29.7 15 0.0011 28.5 2.7 39 90-128 125-163 (174)
3 d1ufaa1 a.8.3.3 (A:413-517) Hy 26.3 20 0.0015 25.5 2.7 21 124-144 56-76 (105)
4 d2hwna1 a.31.1.1 (A:5-43) cAMP 23.5 17 0.0013 21.7 1.6 18 74-91 9-26 (39)
5 d2z1ca1 b.40.14.1 (A:2-72) Hyd 21.0 29 0.0021 22.7 2.5 24 146-169 36-59 (71)
6 d1vk4a_ c.72.1.1 (A:) Hypothet 20.9 55 0.004 23.3 4.3 37 86-124 230-268 (288)
7 d1xkya1 c.1.10.1 (A:1-292) Dih 20.2 24 0.0018 26.7 2.2 22 157-189 270-291 (292)
8 d1q5qh_ d.153.1.4 (H:) Proteas 19.1 33 0.0024 24.7 2.8 18 119-136 135-152 (224)
9 d1hl2a_ c.1.10.1 (A:) N-acetyl 17.1 23 0.0017 26.9 1.5 13 157-169 270-282 (295)
10 d2b5dx1 a.8.3.3 (X:415-528) Al 16.9 28 0.002 24.8 1.8 22 124-145 57-78 (114)
No 1
>d1tjla1 a.2.14.1 (A:7-110) DnaK suppressor protein DksA, alpha-hairpin domain {Escherichia coli [TaxId: 562]}
Probab=32.52 E-value=16 Score=25.53 Aligned_cols=23 Identities=30% Similarity=0.564 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhccC
Q 029467 170 KKAREQKLYAQTQQALGKLRKEE 192 (193)
Q Consensus 170 k~~~eekl~~~~~r~i~kl~k~e 192 (193)
-+.||.||+..|+.+|..+..+|
T Consensus 82 ~~dRerKLL~KI~~AL~RI~~Ge 104 (104)
T d1tjla1 82 NRDRERKLIKKIEKTLKKVEDED 104 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHhcCC
Confidence 46789999999999999987654
No 2
>d1ciia1 f.1.1.1 (A:451-624) Colicin Ia {Escherichia coli [TaxId: 562]}
Probab=29.67 E-value=15 Score=28.46 Aligned_cols=39 Identities=23% Similarity=0.402 Sum_probs=29.2
Q ss_pred hhhhhhhhhhhhhhhhhcCCCCCchhHHHHHHHHhhhHH
Q 029467 90 VNSAIAGFGSGALLGRLQGGQRGALRYSVIFAVVGTTVD 128 (193)
Q Consensus 90 inSavaG~~SGa~lGrlqGG~~~a~~yav~fA~vGtg~~ 128 (193)
..+.++-..+..+++.+-|.|.+++-++++.++||+=+|
T Consensus 125 ~~g~~asav~a~~fs~~~g~~lgi~g~ali~~~v~a~Id 163 (174)
T d1ciia1 125 IAGNAATALVALVFSILTGSALGIIGYGLLMAVTGALID 163 (174)
T ss_dssp BTTCBHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhC
Confidence 344444445566778889999999999999999987544
No 3
>d1ufaa1 a.8.3.3 (A:413-517) Hypothetical protein TT1467, domain 2 {Thermus thermophilus [TaxId: 274]}
Probab=26.29 E-value=20 Score=25.46 Aligned_cols=21 Identities=29% Similarity=0.317 Sum_probs=19.4
Q ss_pred hhhHHHHHhhhchhhHHhHhh
Q 029467 124 GTTVDYATLRLAPIIRNFRES 144 (193)
Q Consensus 124 Gtg~~~a~~k~~~~~~~f~e~ 144 (193)
||+.+||.++.++-+..|.+.
T Consensus 56 gt~~eYA~~R~~~Hl~rF~~L 76 (105)
T d1ufaa1 56 GQAEAYARERYEEHARAFFHL 76 (105)
T ss_dssp CSSHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999874
No 4
>d2hwna1 a.31.1.1 (A:5-43) cAMP-dependent protein kinase type II regulatory subunit {Mouse (Mus musculus) [TaxId: 10090]}
Probab=23.50 E-value=17 Score=21.68 Aligned_cols=18 Identities=22% Similarity=0.379 Sum_probs=15.5
Q ss_pred HHHHHHHHhhcCCCCchh
Q 029467 74 AREFVRVSRKTGPDDLVN 91 (193)
Q Consensus 74 arE~~r~~R~t~pdd~in 91 (193)
.++|+|++.++-|+|++.
T Consensus 9 L~~ftrevLR~qP~di~~ 26 (39)
T d2hwna1 9 LQGYTVEVLRQQPPDLVD 26 (39)
T ss_dssp HHHHHHHHHHHCCSCHHH
T ss_pred HHHHHHHHHHHCCchHHH
Confidence 368999999999999874
No 5
>d2z1ca1 b.40.14.1 (A:2-72) Hydrogenase expression/formation protein HypC {Thermococcus kodakaraensis [TaxId: 311400]}
Probab=21.05 E-value=29 Score=22.69 Aligned_cols=24 Identities=38% Similarity=0.565 Sum_probs=15.5
Q ss_pred cCCCccccCCCCcceeccHHHHHH
Q 029467 146 KDGDWLKLPEWSPIQVLDEEALAE 169 (193)
Q Consensus 146 ~~~~w~~~P~WsPiq~L~eE~~a~ 169 (193)
+-.||.=+=-=+-|+++|+|+.++
T Consensus 36 ~vGDyVLVh~G~Ai~~id~eeA~e 59 (71)
T d2z1ca1 36 KPGDWVIVHTGFAIEKLDEKKAME 59 (71)
T ss_dssp CTTCEEEEETTEEEEEECHHHHHH
T ss_pred CCCCEEEEeechhhhhCCHHHHHH
Confidence 445564332337799999998654
No 6
>d1vk4a_ c.72.1.1 (A:) Hypothetical protein TM0415 {Thermotoga maritima [TaxId: 2336]}
Probab=20.88 E-value=55 Score=23.30 Aligned_cols=37 Identities=16% Similarity=0.094 Sum_probs=26.2
Q ss_pred CCCchhhhhhh--hhhhhhhhhhcCCCCCchhHHHHHHHHh
Q 029467 86 PDDLVNSAIAG--FGSGALLGRLQGGQRGALRYSVIFAVVG 124 (193)
Q Consensus 86 pdd~inSavaG--~~SGa~lGrlqGG~~~a~~yav~fA~vG 124 (193)
|.+.+++..|| |.+|.+.+.|+.|. .+.-++-||..-
T Consensus 230 ~~~vvDttGAGDsF~ag~i~~~l~~g~--~~~~a~~~A~~~ 268 (288)
T d1vk4a_ 230 SWSLEGRTGRGDTCTAAFLVGFVFKKM--SIEKATKFAAAV 268 (288)
T ss_dssp CSSGGGGTTHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHH
T ss_pred CCccCCCCCHHHHHHHHHHHHHHHCCC--CHHHHHHHHHHH
Confidence 47889999999 77777788886653 356666666553
No 7
>d1xkya1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Bacillus anthracis [TaxId: 1392]}
Probab=20.21 E-value=24 Score=26.69 Aligned_cols=22 Identities=23% Similarity=0.296 Sum_probs=16.4
Q ss_pred CcceeccHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 029467 157 SPIQVLDEEALAEKKAREQKLYAQTQQALGKLR 189 (193)
Q Consensus 157 sPiq~L~eE~~a~k~~~eekl~~~~~r~i~kl~ 189 (193)
.|++.||+|+.++ +++.|++|.
T Consensus 270 ~P~~~lt~~~~~~-----------i~~~l~~l~ 291 (292)
T d1xkya1 270 LPLLPLTEEERVT-----------LQSVMQSIP 291 (292)
T ss_dssp TTSCCCCHHHHHH-----------HHHHHHTSC
T ss_pred CCCCCCCHHHHHH-----------HHHHHHHcC
Confidence 5888999998766 556666664
No 8
>d1q5qh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Rhodococcus erythropolis [TaxId: 1833]}
Probab=19.15 E-value=33 Score=24.69 Aligned_cols=18 Identities=22% Similarity=0.246 Sum_probs=12.9
Q ss_pred HHHHHhhhHHHHHhhhch
Q 029467 119 IFAVVGTTVDYATLRLAP 136 (193)
Q Consensus 119 ~fA~vGtg~~~a~~k~~~ 136 (193)
-|.+.|.|.+||..-+..
T Consensus 135 ~~~a~GsG~~~a~~~Le~ 152 (224)
T d1q5qh_ 135 GYHAVGSGSLFAKSALKK 152 (224)
T ss_dssp SEEEESTTHHHHHHHHHH
T ss_pred ceeeecCccHHHHHHHHH
Confidence 346789999888875543
No 9
>d1hl2a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Escherichia coli [TaxId: 562]}
Probab=17.09 E-value=23 Score=26.90 Aligned_cols=13 Identities=38% Similarity=0.588 Sum_probs=10.9
Q ss_pred CcceeccHHHHHH
Q 029467 157 SPIQVLDEEALAE 169 (193)
Q Consensus 157 sPiq~L~eE~~a~ 169 (193)
.|++.||+|+.++
T Consensus 270 ~P~~~l~~~~~~~ 282 (295)
T d1hl2a_ 270 KPFGPVDEKYLPE 282 (295)
T ss_dssp TTSCCCCGGGHHH
T ss_pred CCCCCCCHHHHHH
Confidence 5899999998766
No 10
>d2b5dx1 a.8.3.3 (X:415-528) Alpha-amylase AmyC {Thermotoga maritima [TaxId: 2336]}
Probab=16.94 E-value=28 Score=24.76 Aligned_cols=22 Identities=32% Similarity=0.324 Sum_probs=19.5
Q ss_pred hhhHHHHHhhhchhhHHhHhhh
Q 029467 124 GTTVDYATLRLAPIIRNFRESH 145 (193)
Q Consensus 124 Gtg~~~a~~k~~~~~~~f~e~~ 145 (193)
||+.+||.++.+.-++.|.+-.
T Consensus 57 gT~~eYA~~R~~~Hl~rF~~L~ 78 (114)
T d2b5dx1 57 RTSVQYAENRTKLHIKRFLNLY 78 (114)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999888543
Done!