Query 029469
Match_columns 193
No_of_seqs 181 out of 1079
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 13:24:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029469.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029469hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4824 Apolipoprotein D/Lipoc 100.0 1.6E-31 3.5E-36 221.7 9.6 143 2-161 68-224 (224)
2 PF08212 Lipocalin_2: Lipocali 99.9 5E-25 1.1E-29 174.0 12.0 116 2-135 27-143 (143)
3 COG3040 Blc Bacterial lipocali 99.9 1.5E-23 3.2E-28 170.6 13.3 114 3-136 58-172 (174)
4 PRK10477 outer membrane lipopr 99.9 1.4E-20 2.9E-25 154.0 14.2 115 2-136 60-175 (177)
5 PF00061 Lipocalin: Lipocalin 99.4 5E-12 1.1E-16 96.6 9.3 110 4-135 28-142 (144)
6 PF03973 Triabin: Triabin; In 97.9 1.8E-05 3.9E-10 63.7 4.4 34 74-107 100-138 (148)
7 PF02087 Nitrophorin: Nitropho 97.6 0.00016 3.5E-09 59.5 6.3 59 78-139 106-171 (178)
8 KOG4824 Apolipoprotein D/Lipoc 97.2 0.00037 8E-09 58.9 3.6 30 61-90 125-154 (224)
9 PF07137 VDE: Violaxanthin de- 97.1 0.0015 3.2E-08 54.9 6.5 67 74-140 115-191 (198)
10 PLN02372 violaxanthin de-epoxi 94.3 0.15 3.3E-06 47.4 7.1 66 74-139 283-358 (455)
11 PF11032 ApoM: Apolipoprotein 86.3 1.4 3.1E-05 36.9 4.9 40 97-139 142-184 (186)
12 PF00356 LacI: Bacterial regul 78.7 1.2 2.7E-05 28.9 1.3 28 101-128 19-46 (46)
13 COG3914 Spy Predicted O-linked 75.4 7.1 0.00015 38.2 5.9 38 97-136 460-497 (620)
14 PRK11678 putative chaperone; P 55.2 34 0.00073 32.1 6.2 65 112-191 385-449 (450)
15 PHA02517 putative transposase 50.9 76 0.0016 26.9 7.3 62 97-160 140-201 (277)
16 PRK10727 DNA-binding transcrip 50.8 13 0.00029 32.1 2.6 60 100-161 20-88 (343)
17 PRK09492 treR trehalose repres 49.9 15 0.00033 31.1 2.8 29 101-129 24-52 (315)
18 PF10346 Con-6: Conidiation pr 48.3 25 0.00054 21.9 2.8 21 104-124 15-35 (36)
19 PF11423 Repressor_Mnt: Regula 47.2 13 0.00027 22.2 1.3 9 179-187 19-27 (30)
20 PRK10703 DNA-binding transcrip 47.0 15 0.00032 31.6 2.3 57 102-160 22-87 (341)
21 PRK09526 lacI lac repressor; R 45.9 18 0.00038 31.1 2.6 59 101-161 25-92 (342)
22 TIGR01481 ccpA catabolite cont 45.3 17 0.00037 31.0 2.4 58 101-160 21-87 (329)
23 TIGR02986 restrict_Alw26I type 44.4 40 0.00088 31.6 4.7 92 95-190 27-135 (424)
24 PRK10401 DNA-binding transcrip 44.3 17 0.00037 31.4 2.3 59 101-161 21-88 (346)
25 smart00354 HTH_LACI helix_turn 44.1 21 0.00046 24.4 2.3 28 102-129 21-48 (70)
26 COG3040 Blc Bacterial lipocali 43.0 53 0.0011 27.4 4.8 76 21-107 54-131 (174)
27 PRK10423 transcriptional repre 42.9 19 0.00042 30.5 2.4 58 102-161 19-85 (327)
28 PRK14987 gluconate operon tran 42.4 24 0.00052 30.2 2.9 59 101-161 25-92 (331)
29 PRK10014 DNA-binding transcrip 41.7 26 0.00057 30.0 3.0 58 102-161 27-93 (342)
30 COG1609 PurR Transcriptional r 41.0 26 0.00057 31.0 3.0 60 101-162 20-88 (333)
31 KOG4626 O-linked N-acetylgluco 38.5 55 0.0012 33.0 4.9 35 97-135 789-823 (966)
32 TIGR02417 fruct_sucro_rep D-fr 36.3 28 0.00061 29.7 2.4 29 102-130 20-51 (327)
33 PRK10339 DNA-binding transcrip 35.5 36 0.00078 29.1 2.9 30 101-130 21-52 (327)
34 cd01392 HTH_LacI Helix-turn-he 34.5 38 0.00083 21.1 2.2 27 104-130 20-46 (52)
35 PRK11303 DNA-binding transcrip 34.0 32 0.0007 29.3 2.3 52 107-160 29-89 (328)
36 PF15641 Tox-MPTase5: Metallop 32.8 22 0.00047 26.8 0.9 24 154-177 17-40 (109)
37 TIGR02405 trehalos_R_Ecol treh 32.4 36 0.00078 29.0 2.4 59 101-161 21-88 (311)
38 PRK11041 DNA-binding transcrip 29.2 56 0.0012 27.4 3.0 53 107-161 3-64 (309)
39 cd00384 ALAD_PBGS Porphobilino 28.8 24 0.00052 31.9 0.7 66 109-178 49-118 (314)
40 PRK09283 delta-aminolevulinic 28.5 25 0.00053 32.0 0.7 66 109-178 57-126 (323)
41 PF07409 GP46: Phage protein G 28.3 52 0.0011 25.5 2.4 25 97-122 44-68 (116)
42 PF12651 RHH_3: Ribbon-helix-h 28.0 25 0.00054 22.4 0.5 25 107-131 8-32 (44)
43 PF01402 RHH_1: Ribbon-helix-h 27.5 12 0.00026 22.4 -1.0 24 107-130 5-28 (39)
44 PRK13384 delta-aminolevulinic 27.2 27 0.00058 31.8 0.7 66 109-178 59-128 (322)
45 PF04498 Pox_VP8_L4R: Poxvirus 26.7 17 0.00038 30.9 -0.6 26 164-189 188-213 (218)
46 TIGR02384 RelB_DinJ addiction 24.6 57 0.0012 23.5 1.9 25 107-131 8-32 (83)
47 PRK11235 bifunctional antitoxi 24.4 53 0.0012 23.8 1.7 25 107-131 7-31 (80)
48 PF13844 Glyco_transf_41: Glyc 24.3 95 0.0021 29.6 3.8 35 97-135 315-349 (468)
49 COG0113 HemB Delta-aminolevuli 24.2 33 0.00072 31.2 0.7 24 155-178 107-130 (330)
50 PF02484 Rhabdo_NV: Rhabdoviru 23.0 99 0.0021 23.4 2.9 63 104-170 4-74 (111)
51 COG3077 RelB DNA-damage-induci 23.0 55 0.0012 24.3 1.6 25 107-131 10-34 (88)
52 PF04221 RelB: RelB antitoxin; 22.2 42 0.0009 23.9 0.8 23 108-130 8-30 (83)
53 PHA01748 hypothetical protein 21.2 43 0.00094 22.7 0.7 25 107-131 8-32 (60)
54 KOG3037 Cell membrane glycopro 21.1 3.9E+02 0.0085 24.5 6.8 72 86-158 84-158 (330)
55 COG4509 Uncharacterized protei 21.0 1.3E+02 0.0027 26.2 3.5 73 76-148 155-235 (244)
56 cd04824 eu_ALAD_PBGS_cysteine_ 20.3 44 0.00095 30.4 0.7 64 109-178 49-121 (320)
57 PRK12454 carbamate kinase-like 20.1 42 0.0009 30.3 0.5 31 137-172 80-110 (313)
No 1
>KOG4824 consensus Apolipoprotein D/Lipocalin [Cell wall/membrane/envelope biogenesis]
Probab=99.97 E-value=1.6e-31 Score=221.67 Aligned_cols=143 Identities=41% Similarity=0.622 Sum_probs=125.3
Q ss_pred ceeEEEeeCCCCcEEEEeeEEecCCCCeEEeeeeeEEEcCCcccccchhhhccceeeeceeEEEEe-------cccCCCC
Q 029469 2 IEGVYTFDKEKPAIQVDTFCVHGGPDGYITGIRGNVQCLPEEELEKNVTDLEKQEMIKGKCYLRFP-------TLPFIPK 74 (193)
Q Consensus 2 ~~~~Yt~~~~~g~i~V~n~C~~~~~dG~~~~~~G~a~v~n~~~~ak~~~~~~g~a~~~~k~~v~F~-------~~p~~p~ 74 (193)
||+.|++++++|.|.|.|.|+| .+||++..++|.|+++|+. ..++. .+++|. ++|| .
T Consensus 68 tt~~y~~~nkngkI~Vln~~v~-r~dG~~n~ieG~atpvn~~-s~k~e------------~kf~~~~p~~~~~~l~~--~ 131 (224)
T KOG4824|consen 68 TTGAYTFDNKNGKIHVLNECVH-RPDGKINFIEGKATPVNED-SDKAE------------LKFEFQEPIFEKCFLRF--P 131 (224)
T ss_pred eeeeeEecCCCceEEEeeeeee-cCCCccceeeeeeeecCCc-hhhhc------------ceeEEecCchHhhccCC--C
Confidence 8999999999999999999998 5999999999999999943 33322 123332 2233 5
Q ss_pred CCEEEEEEcCCCEEEEEeec------CceEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEcCC-CCCcCChHHHHH
Q 029469 75 EPYDVIATDYDNFALVSGAK------DKSFIQIYSRTPTPGPEFIEKYKSYLANFGYDPNKIKDTPQ-DCEVISNSQLAA 147 (193)
Q Consensus 75 ~dY~Vl~TDYdnYAiV~~c~------~~~~lWILSRtp~ls~e~~~~~~~~l~~~G~d~~~l~~t~Q-~C~~~~~~~~~~ 147 (193)
+.|||+.|||++||++|+|. +.+++|||||+|++.+|+++++.+++.+.|||+++|+.+|| +||. .+.++++
T Consensus 132 ~iy~Vl~tdyenya~~ysc~alisl~h~df~wIlsRtpn~epEt~~klkn~l~~~gyDpeKl~~Tpq~dcp~-~s~~~~~ 210 (224)
T KOG4824|consen 132 PIYFVLGTDYENYADDYSCHALISLKHKDFLWILSRTPNMEPETIAKLKNKLAEEGYDPEKLHDTPQSDCPP-ESAEAAA 210 (224)
T ss_pred CCcceecccHhheeccccccceeccCCCceEEEEecCCCCChHHHHHHHHHHHHcCCCHHHhccCCccCCCh-hhhhhHH
Confidence 68999999999999999995 45999999999999999999999999999999999999999 7999 8889999
Q ss_pred HhccchhhhhhhcC
Q 029469 148 MMSMSGMQQALTNQ 161 (193)
Q Consensus 148 ~~~~~~~~~~~~~~ 161 (193)
||+||||++.|+||
T Consensus 211 ~~~~~~~~~sl~~~ 224 (224)
T KOG4824|consen 211 DMKGPGMEKSLFGK 224 (224)
T ss_pred hccCcchhhhhccC
Confidence 99999999999986
No 2
>PF08212 Lipocalin_2: Lipocalin-like domain; InterPro: IPR000566 Proteins which transport small hydrophobic molecules such as steroids, bilins, retinoids, and lipids share limited regions of sequence homology and a common tertiary structure architecture [, , , , ]. This is an eight stranded antiparallel beta-barrel with a repeated + 1 topology enclosing a internal ligand binding site [, ]. The name 'lipocalin' has been proposed [] for this protein family, but cytosolic fatty-acid binding proteins are also included. The sequences of most members of the family, the core or kernal lipocalins, are characterised by three short conserved stretches of residues, while others, the outlier lipocalin group, share only one or two of these [, ]. Proteins known to belong to this family include alpha-1-microglobulin (protein HC); alpha-1-acid glycoprotein (orosomucoid) []; aphrodisin; apolipoprotein D; beta-lactoglobulin; complement component C8 gamma chain []; crustacyanin []; epididymal-retinoic acid binding protein (E-RABP) []; insectacyanin; odorant-binding protein (OBP); human pregnancy-associated endometrial alpha-2 globulin; probasin (PB), a rat prostatic protein; prostaglandin D synthase (5.3.99.2 from EC) []; purpurin; Von Ebner's gland protein (VEGP) []; and lizard epididymal secretory protein IV (LESP IV) [].; GO: 0005488 binding; PDB: 3EBW_B 1QWD_A 2ACO_A 3MBT_A.
Probab=99.92 E-value=5e-25 Score=174.01 Aligned_cols=116 Identities=35% Similarity=0.573 Sum_probs=90.7
Q ss_pred ceeEEEeeCCCCcEEEEeeEEecCCCCeEEeeeeeEEEcCCcccccchhhhccceeeeceeEEEEecccCCCCCCEEEEE
Q 029469 2 IEGVYTFDKEKPAIQVDTFCVHGGPDGYITGIRGNVQCLPEEELEKNVTDLEKQEMIKGKCYLRFPTLPFIPKEPYDVIA 81 (193)
Q Consensus 2 ~~~~Yt~~~~~g~i~V~n~C~~~~~dG~~~~~~G~a~v~n~~~~ak~~~~~~g~a~~~~k~~v~F~~~p~~p~~dY~Vl~ 81 (193)
++++|+++ ++|.|.|.|+|++ .+|....++|+|.+.++..++++. |+|...|+.+.++||||+
T Consensus 27 ~~a~Yt~~-~dg~i~V~n~~~~--~~g~~~~~~g~a~~~~~~~~~~l~--------------V~f~~~~~~~~~~YwVl~ 89 (143)
T PF08212_consen 27 VTAEYTLR-DDGTISVRNSCRR--PDGKIKTIRGTATVVDPSGPAKLK--------------VRFPGIPFPPKGNYWVLY 89 (143)
T ss_dssp EEEEEEE--TTS-EEEEEEEEE--TTTCCCEEEEEEEESSBTTSSEEE--------------EESST---TEEEEEEEEE
T ss_pred eeeeEEEc-CCCEEEEEEEEEc--CCCCEEEEEeEEEEcCCCCccEEE--------------EEEeccccCCCcceEEEE
Confidence 67999998 5779999999997 799999999999998877666554 888665555589999999
Q ss_pred EcCCCEEEEE-eecCceEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEcCC
Q 029469 82 TDYDNFALVS-GAKDKSFIQIYSRTPTPGPEFIEKYKSYLANFGYDPNKIKDTPQ 135 (193)
Q Consensus 82 TDYdnYAiV~-~c~~~~~lWILSRtp~ls~e~~~~~~~~l~~~G~d~~~l~~t~Q 135 (193)
|||+ |++++ ++++.+++|||||+|+++++.+++++++++++|||+++|++++|
T Consensus 90 ~D~d-Y~~~iv~~~~~~~~WILsR~p~~~~~~~~~~~~~~~~~G~d~~~l~~~~Q 143 (143)
T PF08212_consen 90 TDYD-YSWAIVGSPDREYLWILSRTPQLSEETYAEILDRAKQQGYDVSKLIWTPQ 143 (143)
T ss_dssp EBTT-SSEEEEEECCCCEEEEEESSSS--HHHHHHHHHHHHHTT--GGGEEE---
T ss_pred EcCC-ccEEEEecCCCCEEEEEeCCCCCCHHHHHHHHHHHHHcCCCHHHeEECCC
Confidence 9998 54443 44678999999999999999999999999999999999999987
No 3
>COG3040 Blc Bacterial lipocalin [Cell envelope biogenesis, outer membrane]
Probab=99.91 E-value=1.5e-23 Score=170.57 Aligned_cols=114 Identities=25% Similarity=0.393 Sum_probs=97.7
Q ss_pred eeEEEeeCCCCcEEEEeeEEecCCCCeEEeeeeeEEEcCCcccccchhhhccceeeeceeEEEEecccCCCCCCEEEEEE
Q 029469 3 EGVYTFDKEKPAIQVDTFCVHGGPDGYITGIRGNVQCLPEEELEKNVTDLEKQEMIKGKCYLRFPTLPFIPKEPYDVIAT 82 (193)
Q Consensus 3 ~~~Yt~~~~~g~i~V~n~C~~~~~dG~~~~~~G~a~v~n~~~~ak~~~~~~g~a~~~~k~~v~F~~~p~~p~~dY~Vl~T 82 (193)
.|+|++. +++.|.|.|.|..+... .++.++|+|.+++....++++ |+| +.|| .++|||++.
T Consensus 58 tA~Y~l~-d~~~I~V~n~c~~~~~~-~~~~ieGkA~i~~~~~~a~Lk--------------VsF-~~pF--~g~Y~Vl~~ 118 (174)
T COG3040 58 TATYSLR-DDGGISVINRCRTGDGG-KWSQIEGKAKIVDNATRAKLK--------------VSF-FGPF--YGDYWVLAL 118 (174)
T ss_pred EeEEEEe-cCCceEEEeccccCCCC-CceeecceEEEecCccccEEE--------------EEe-cCCc--cccEEEEEE
Confidence 5899998 68889999999975322 899999999999988766654 888 3477 599999999
Q ss_pred cCC-CEEEEEeecCceEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEcCCC
Q 029469 83 DYD-NFALVSGAKDKSFIQIYSRTPTPGPEFIEKYKSYLANFGYDPNKIKDTPQD 136 (193)
Q Consensus 83 DYd-nYAiV~~c~~~~~lWILSRtp~ls~e~~~~~~~~l~~~G~d~~~l~~t~Q~ 136 (193)
|.+ .+||| +.++++++|||||+|++|++.+++++++++++|||.+++++++|.
T Consensus 119 d~eYs~aiV-gsPdr~ylWlLsRtP~~s~~~~~~ml~~ak~~Gfdv~~li~~~~~ 172 (174)
T COG3040 119 DPEYSWAIV-GSPDREYLWLLSRTPTLSQETLKRMLEIAKRRGFDVSKLIFVQQP 172 (174)
T ss_pred CCCccEEEE-eCCCcceEEEEecCCCCCHHHHHHHHHHHHHcCCCcceeEecCCC
Confidence 965 45555 446899999999999999999999999999999999999999874
No 4
>PRK10477 outer membrane lipoprotein Blc; Provisional
Probab=99.85 E-value=1.4e-20 Score=154.05 Aligned_cols=115 Identities=24% Similarity=0.316 Sum_probs=95.2
Q ss_pred ceeEEEeeCCCCcEEEEeeEEecCCCCeEEeeeeeEEEcCCcccccchhhhccceeeeceeEEEEecccCCCCCCEEEEE
Q 029469 2 IEGVYTFDKEKPAIQVDTFCVHGGPDGYITGIRGNVQCLPEEELEKNVTDLEKQEMIKGKCYLRFPTLPFIPKEPYDVIA 81 (193)
Q Consensus 2 ~~~~Yt~~~~~g~i~V~n~C~~~~~dG~~~~~~G~a~v~n~~~~ak~~~~~~g~a~~~~k~~v~F~~~p~~p~~dY~Vl~ 81 (193)
+.++|+++ ++|+|.|.|+|..+ .+|..+.++|+|++.+...++++ +++| +.|+ .++|||++
T Consensus 60 ~~a~Y~~~-~~g~i~V~n~~~~~-~~g~~~~~~g~a~~~~~~~~~~~--------------~v~f-~~~~--~~~Y~v~~ 120 (177)
T PRK10477 60 VTATYSLR-DDGGLNVINKGYNP-DRGMWQESEGKAYFTGAPTRAAL--------------KVSF-FGPF--YGGYNVIA 120 (177)
T ss_pred EEEEEEEC-CCCcEEEEEeeEcC-CCCCEEEEEEEEEecCCCCCeEE--------------EEEe-cCCc--ccceEEEE
Confidence 46899998 68999999999853 46999999999999877655443 3666 3344 68999977
Q ss_pred EcCC-CEEEEEeecCceEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEcCCC
Q 029469 82 TDYD-NFALVSGAKDKSFIQIYSRTPTPGPEFIEKYKSYLANFGYDPNKIKDTPQD 136 (193)
Q Consensus 82 TDYd-nYAiV~~c~~~~~lWILSRtp~ls~e~~~~~~~~l~~~G~d~~~l~~t~Q~ 136 (193)
+|+| +||||.+ ++.+++|||||+|+++++.+++++++++++|||.++|++++|.
T Consensus 121 ~d~dY~~aiv~~-~~~~~~wIlsR~p~l~~~~~~~~~~~~~~~G~d~~~l~~~~q~ 175 (177)
T PRK10477 121 LDREYRHALVCG-PDRDYLWILSRTPTISDEVKQQMLAVATREGFDVSKLIWVKQP 175 (177)
T ss_pred EcCCCCEEEEEc-CCCCEEEEEeCCCCCCHHHHHHHHHHHHHcCCCHHHeEECCCC
Confidence 7744 4898832 4789999999999999999999999999999999999999984
No 5
>PF00061 Lipocalin: Lipocalin / cytosolic fatty-acid binding protein family fatty acid-binding protein signature lipocalin signature; InterPro: IPR000566 Proteins which transport small hydrophobic molecules such as steroids, bilins, retinoids, and lipids share limited regions of sequence homology and a common tertiary structure architecture [, , , , ]. This is an eight stranded antiparallel beta-barrel with a repeated + 1 topology enclosing a internal ligand binding site [, ]. The name 'lipocalin' has been proposed [] for this protein family, but cytosolic fatty-acid binding proteins are also included. The sequences of most members of the family, the core or kernal lipocalins, are characterised by three short conserved stretches of residues, while others, the outlier lipocalin group, share only one or two of these [, ]. Proteins known to belong to this family include alpha-1-microglobulin (protein HC); alpha-1-acid glycoprotein (orosomucoid) []; aphrodisin; apolipoprotein D; beta-lactoglobulin; complement component C8 gamma chain []; crustacyanin []; epididymal-retinoic acid binding protein (E-RABP) []; insectacyanin; odorant-binding protein (OBP); human pregnancy-associated endometrial alpha-2 globulin; probasin (PB), a rat prostatic protein; prostaglandin D synthase (5.3.99.2 from EC) []; purpurin; Von Ebner's gland protein (VEGP) []; and lizard epididymal secretory protein IV (LESP IV) [].; GO: 0005488 binding; PDB: 1I05_A 1MUP_A 2LB6_A 1I04_A 1I06_A 1DC9_A 1URE_A 1AEL_A 1T8V_A 1ICM_A ....
Probab=99.35 E-value=5e-12 Score=96.62 Aligned_cols=110 Identities=29% Similarity=0.365 Sum_probs=78.2
Q ss_pred eEEEeeCCCCcEEEEeeEEecCCCCeEEeeeeeEEEcCCcccccchhhhccceeeeceeEEEEecccCCCCCCEEEEEEc
Q 029469 4 GVYTFDKEKPAIQVDTFCVHGGPDGYITGIRGNVQCLPEEELEKNVTDLEKQEMIKGKCYLRFPTLPFIPKEPYDVIATD 83 (193)
Q Consensus 4 ~~Yt~~~~~g~i~V~n~C~~~~~dG~~~~~~G~a~v~n~~~~ak~~~~~~g~a~~~~k~~v~F~~~p~~p~~dY~Vl~TD 83 (193)
.+|++. +++.+.+...-..+ |........+.-. ..+++ ..+.|.. +....+++|++||
T Consensus 28 ~~~~~~-~~~~~~~~~~~~~~---~~c~~~~~~~~~~--~~~g~--------------~~~~~~~--~~~~~~~~v~~td 85 (144)
T PF00061_consen 28 VVIKPL-ANGNLPVTFTSKRG---GQCVTITVTFKKT--EEPGK--------------FTVEFSE--YPGGNDFWVLDTD 85 (144)
T ss_dssp EEEEEH-HTTEEEEEEEEEET---TEEEEEEEEEEEE--EETTE--------------EEEEEEE--STTEEEEEEEEEE
T ss_pred EEEEee-cCCCeEEEEEEecC---CEEEEEEEeEEec--ccCCc--------------cceeeec--cccccceeeeccC
Confidence 456654 57778887776532 3333333322221 11112 2244433 2224589999999
Q ss_pred CCCEEEEEeecC-----ceEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEcCC
Q 029469 84 YDNFALVSGAKD-----KSFIQIYSRTPTPGPEFIEKYKSYLANFGYDPNKIKDTPQ 135 (193)
Q Consensus 84 YdnYAiV~~c~~-----~~~lWILSRtp~ls~e~~~~~~~~l~~~G~d~~~l~~t~Q 135 (193)
|++|||+|.|.. ...+|||+|+++++++.++++.++++++|++.++++.++|
T Consensus 86 y~~yai~~~~~~~~g~~~~~~~l~~R~~~l~~~~~~~f~~~~~~~gi~~~~i~~~~~ 142 (144)
T PF00061_consen 86 YDNYAIVYSCKKDNGKHTIVAWLLSRTPELSPEALEKFKKFAKSLGIDEENIVRTFQ 142 (144)
T ss_dssp SSTEEEEEEEEEETTEEEEEEEEEESSSEEEHHHHHHHHHHHHHTTETGGCEEEEEE
T ss_pred CCCEEEEEEEccCCCceEEEEEEEcCCCcCCHHHHHHHHHHHHhCCCCHHeEEECCC
Confidence 999999999975 3679999999999999999999999999999999998876
No 6
>PF03973 Triabin: Triabin; InterPro: IPR005657 This family contains saliva proteins from haematophagous insects that counteract vertebrate host haemostasis events such as coagulation, vasoconstriction and platelet aggregation []. These include: Triabin, a serine-protease inhibitor. It forms a non-covalent complex with thrombin at a molecular ratio of 1:1, and inhibits thrombin-induced platelet aggregation. Pallidipin, an anticollagen induced platelet aggregation factor also found in Triatoma pallidipennis salivary homogenates. Procalin, the major allergen of Triatoma protracta saliva. All members of this family belong to MEROPS proteinase inhibitor family I59, clan IZ. ; GO: 0005488 binding, 0030682 evasion or tolerance of host defense response; PDB: 3EBK_B 1AVG_I.
Probab=97.87 E-value=1.8e-05 Score=63.71 Aligned_cols=34 Identities=29% Similarity=0.428 Sum_probs=27.7
Q ss_pred CCCEEEEEEcCCCEEEEEeecCc-----eEEEEEeCCCC
Q 029469 74 KEPYDVIATDYDNFALVSGAKDK-----SFIQIYSRTPT 107 (193)
Q Consensus 74 ~~dY~Vl~TDYdnYAiV~~c~~~-----~~lWILSRtp~ 107 (193)
..++.||+|||++|||+|.|... ++++||.|+++
T Consensus 100 ~~~~sVi~TDY~nYAl~YrC~~~~~~~~DN~lVL~R~~~ 138 (148)
T PF03973_consen 100 QVDFSVIDTDYNNYALVYRCVTFESGKEDNYLVLQRNKN 138 (148)
T ss_dssp EEEEEEEEE-TTSEEEEEEEEEESS---EEEEEEESS--
T ss_pred EEEEEEEEcCCCCEEEEEEccCCCCcccccEEEEEcCCC
Confidence 55889999999999999999743 78999999985
No 7
>PF02087 Nitrophorin: Nitrophorin; InterPro: IPR002351 Nitrophorins are haemoproteins found in saliva of blood-feeding insects [, ]. Saliva of the blood-sucking bug Rhodnius prolixus (Triatomid bug) contains four homologous nitrophorins, designated NP1 to NP4 in order of their relative abundance in the glands []. As isolated, nitrophorins contain nitric oxide (NO) ligated to the ferric (FeIII) haem iron. Histamine, which is released by the host in response to tissue damage, is another nitrophorin ligand. Nitrophorins transport NO to the feeding site. Dilution, binding of histamine and increase in pH (from pH ~5 in salivary gland to pH ~7.4 in the host tissue) facilitate the release of NO into the tissue where it induces vasodilatation. The salivary nitrophorin from the hemipteran Cimex lectularius (Bed bug) has no sequence similarity to R. prolixus nitrophorins. It is suggested that the two classes of insect nitrophorins have arisen as a product of the convergent evolution []. 3-D structures of several nitrophorin complexes are known []. The nitrophorin structures reveal lipocalin-like eight-stranded beta-barrel, three alpha-helices and two disulphide bonds, with haem inserted into one end of the barrel. Members of the lipocalin family are known to bind a variety of small hydrophobic ligands, including biliverdin, in a similar fashion (see [] for review). The haem iron is ligated to His59. The position of His59 is restrained through water-mediated hydrogen bond to the carboxylate of Asp70. The His59-Fe bond is bent ~15 degrees out of the imidazole plane. Asp70 forms an unusual hydrogen bond with one of the haem propionates, suggesting the residue has an altered pKa. In NP1-histamine structure, the planes of His59 and histamine imidazole rings lie in an arrangement almost identical to that found in oxidised cytochrome b5. This entry represents the nitrophorin structural domain.; GO: 0051381 histamine binding, 0070026 nitric oxide binding; PDB: 1SXX_A 2OFM_X 1X8Q_A 3TGA_A 1SXU_A 1IKJ_A 1YWD_A 1X8N_A 3FLL_A 1X8O_A ....
Probab=97.61 E-value=0.00016 Score=59.49 Aligned_cols=59 Identities=24% Similarity=0.380 Sum_probs=43.9
Q ss_pred EEEEEcCCCEEEEEeecC------ceEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEcCC-CCCc
Q 029469 78 DVIATDYDNFALVSGAKD------KSFIQIYSRTPTPGPEFIEKYKSYLANFGYDPNKIKDTPQ-DCEV 139 (193)
Q Consensus 78 ~Vl~TDYdnYAiV~~c~~------~~~lWILSRtp~ls~e~~~~~~~~l~~~G~d~~~l~~t~Q-~C~~ 139 (193)
.|++|| ++||+||.|-. .+..-||+|+.... .-+++...+.+.|+-.++|..+.+ +|.+
T Consensus 106 tv~dtD-ds~AvV~~C~~~~~~~l~~LYaVlnRn~~~~--~~~KVksal~~vglkL~df~~~k~~~C~Y 171 (178)
T PF02087_consen 106 TVLDTD-DSYAVVHVCLHEGNKDLGDLYAVLNRNKNAN--PNDKVKSALDKVGLKLDDFTSTKDNKCKY 171 (178)
T ss_dssp EEEEEE-SSEEEEEEEEEETTEEEEEEEEEEESSTT------HHHHHHHHHTT--GGGSEESTTST---
T ss_pred EEEecC-CCeeEEEEecccCcccceeeeeeeecCCCCC--cchhHHHHHhhcceeehheeecccCCccc
Confidence 359999 68999999962 26689999999866 478999999999999999999998 6998
No 8
>KOG4824 consensus Apolipoprotein D/Lipocalin [Cell wall/membrane/envelope biogenesis]
Probab=97.17 E-value=0.00037 Score=58.90 Aligned_cols=30 Identities=43% Similarity=0.882 Sum_probs=22.4
Q ss_pred eeEEEEecccCCCCCCEEEEEEcCCCEEEE
Q 029469 61 KCYLRFPTLPFIPKEPYDVIATDYDNFALV 90 (193)
Q Consensus 61 k~~v~F~~~p~~p~~dY~Vl~TDYdnYAiV 90 (193)
++-++|+..++++..+|.+.++||+.+||+
T Consensus 125 ~~~l~~~~iy~Vl~tdyenya~~ysc~ali 154 (224)
T KOG4824|consen 125 KCFLRFPPIYFVLGTDYENYADDYSCHALI 154 (224)
T ss_pred hhccCCCCCcceecccHhheecccccccee
Confidence 455888877777777888888888866654
No 9
>PF07137 VDE: Violaxanthin de-epoxidase (VDE); InterPro: IPR010788 This family represents a conserved region approximately 350 residues long within plant violaxanthin de-epoxidase (VDE). In higher plants, violaxanthin de-epoxidase forms part of a conserved system that dissipates excess energy as heat in the light-harvesting complexes of photosystem II (PSII), thus protecting them from photo-inhibitory damage [].; GO: 0046422 violaxanthin de-epoxidase activity, 0055114 oxidation-reduction process, 0009507 chloroplast; PDB: 3CQN_B 3CQR_A.
Probab=97.10 E-value=0.0015 Score=54.89 Aligned_cols=67 Identities=18% Similarity=0.337 Sum_probs=47.4
Q ss_pred CCCEEEEEEc----CCCEEEEE-eecC-----ceEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEcCCCCCcC
Q 029469 74 KEPYDVIATD----YDNFALVS-GAKD-----KSFIQIYSRTPTPGPEFIEKYKSYLANFGYDPNKIKDTPQDCEVI 140 (193)
Q Consensus 74 ~~dY~Vl~TD----YdnYAiV~-~c~~-----~~~lWILSRtp~ls~e~~~~~~~~l~~~G~d~~~l~~t~Q~C~~~ 140 (193)
..+++|++.+ .++|.+|| ...+ ..-+-+++|++.++++.+.++.+.|++.|++.++|..++.+|+..
T Consensus 115 qddWyIl~~~~~~~~~~~vfVyYrG~ndawdgYgGAvVYtrs~~lP~s~~p~l~~aa~k~G~d~~~F~~tDNtC~~~ 191 (198)
T PF07137_consen 115 QDDWYILGSKIEDKPDDFVFVYYRGRNDAWDGYGGAVVYTRSPTLPESIVPELRRAAKKAGIDFSKFIRTDNTCGPE 191 (198)
T ss_dssp EEEEEEEEEE-SSSTT-EEEEEEEEEEETTEEEEEEEEEESSSS--GGGHHHHHHHHHHTT--GGGSEE--STT---
T ss_pred eeeEEEEeecccCCCCCEEEEEEccccccccccCceEEEeCCCCCChHHhHHHHHHHHHhCCCHHHeEEecCCCCCC
Confidence 5578899852 45898886 3332 255899999999999999999999999999999999999999864
No 10
>PLN02372 violaxanthin de-epoxidase
Probab=94.28 E-value=0.15 Score=47.43 Aligned_cols=66 Identities=14% Similarity=0.297 Sum_probs=54.0
Q ss_pred CCCEEEEEEcCCC----EEEEEe-ecC-----ceEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEcCCCCCc
Q 029469 74 KEPYDVIATDYDN----FALVSG-AKD-----KSFIQIYSRTPTPGPEFIEKYKSYLANFGYDPNKIKDTPQDCEV 139 (193)
Q Consensus 74 ~~dY~Vl~TDYdn----YAiV~~-c~~-----~~~lWILSRtp~ls~e~~~~~~~~l~~~G~d~~~l~~t~Q~C~~ 139 (193)
..+++|++...++ |.+||= ..+ +.-+-+++|++.++++.+.++.+.+++-|++-++|..++.+|..
T Consensus 283 qddWyIl~~k~~~~~~d~~lvYYrG~ndAwdgYgGAVvyTrs~~lP~~~~p~L~~Aa~kvG~df~~F~~tDNsCgp 358 (455)
T PLN02372 283 QDDWYILSSKIENKPDDYVFVYYRGRNDAWDGYGGAVVYTRSSTLPESIVPELEKAAKKVGRDFSDFVRTDNTCGP 358 (455)
T ss_pred ccceEEeeccccCCCCCeEEEEecccccccccccceEEEecCCCCChhhhHHHHHHHHHcCCCHHHheeeCCCCCC
Confidence 3467788876554 999872 222 24578999999999999999999999999999999999999954
No 11
>PF11032 ApoM: Apolipoprotein M (ApoM); InterPro: IPR022734 ApoM is a 25 kDa plasma protein associated with high-density lipoproteins (HDLs). ApoM is important in the formation of pre-ss-HDL and also in increasing cholesterol efflux from macrophage foam cells []. Lipoproteins consist of lipids solubilized by apolipoproteins. ApoM lacks an external amphipathic motif and is uniquely secreted to plasma without cleavage of its terminal signal peptide []. ; PDB: 2XKL_A 2WEX_A 2YG2_B 2WEW_A.
Probab=86.25 E-value=1.4 Score=36.85 Aligned_cols=40 Identities=28% Similarity=0.568 Sum_probs=26.3
Q ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEcCC---CCCc
Q 029469 97 SFIQIYSRTPTPGPEFIEKYKSYLANFGYDPNKIKDTPQ---DCEV 139 (193)
Q Consensus 97 ~~lWILSRtp~ls~e~~~~~~~~l~~~G~d~~~l~~t~Q---~C~~ 139 (193)
+.+-++||+|.++++.+++|++.++=+|+. |..+|+ .|+.
T Consensus 142 ~rllLysR~~~~~~~~lEeFk~q~~Cl~~~---~l~~p~~~~~C~~ 184 (186)
T PF11032_consen 142 QRLLLYSRSPKLEEEELEEFKAQTECLGFK---FLLTPRQQEACKL 184 (186)
T ss_dssp EEEEEEESSSS--HHHHHHHHHHHHHTT-----EEE----S-----
T ss_pred eEEEEEeCCCCCCHHHHHHHHHhhhccCcE---EEECccccCcCcc
Confidence 557799999999999999999999999988 777776 3875
No 12
>PF00356 LacI: Bacterial regulatory proteins, lacI family; InterPro: IPR000843 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. One such family groups together a range of proteins, including ascG, ccpA, cytR, ebgR, fruR, galR, galS, lacI, malI, opnR, purF, rafR, rbtR and scrR [, ]. Within this family, the HTH motif is situated towards the N terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3KJX_C 1ZAY_A 1VPW_A 2PUA_A 1QQA_A 1PNR_A 1JFT_A 1QP4_A 2PUD_A 1JH9_A ....
Probab=78.73 E-value=1.2 Score=28.89 Aligned_cols=28 Identities=25% Similarity=0.433 Sum_probs=23.1
Q ss_pred EEeCCCCCCHHHHHHHHHHHHhcCCCCC
Q 029469 101 IYSRTPTPGPEFIEKYKSYLANFGYDPN 128 (193)
Q Consensus 101 ILSRtp~ls~e~~~~~~~~l~~~G~d~~ 128 (193)
+|...+.+++++.+++.+.++++||-++
T Consensus 19 ~ln~~~~vs~~tr~rI~~~a~~lgY~pN 46 (46)
T PF00356_consen 19 VLNGPPRVSEETRERILEAAEELGYRPN 46 (46)
T ss_dssp HHTTCSSSTHHHHHHHHHHHHHHTB-SS
T ss_pred HHhCCCCCCHHHHHHHHHHHHHHCCCCC
Confidence 3455688999999999999999999764
No 13
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=75.36 E-value=7.1 Score=38.18 Aligned_cols=38 Identities=13% Similarity=0.237 Sum_probs=33.6
Q ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEcCCC
Q 029469 97 SFIQIYSRTPTPGPEFIEKYKSYLANFGYDPNKIKDTPQD 136 (193)
Q Consensus 97 ~~lWILSRtp~ls~e~~~~~~~~l~~~G~d~~~l~~t~Q~ 136 (193)
+.+||++-. .++++.+.+.+++++.|++.++|++.|..
T Consensus 460 Svl~L~~~~--~~~~~~~~l~~la~~~Gv~~eRL~f~p~~ 497 (620)
T COG3914 460 SVLLLKAGG--DDAEINARLRDLAEREGVDSERLRFLPPA 497 (620)
T ss_pred cEEEEecCC--CcHHHHHHHHHHHHHcCCChhheeecCCC
Confidence 678999766 57889999999999999999999998763
No 14
>PRK11678 putative chaperone; Provisional
Probab=55.21 E-value=34 Score=32.13 Aligned_cols=65 Identities=22% Similarity=0.255 Sum_probs=43.6
Q ss_pred HHHHHHHHHHhcCCCCCCeEEcCCCCCcCChHHHHHHhccchhhhhhhcCCCCccccCccccCCccchHHHHHHHHHhhh
Q 029469 112 FIEKYKSYLANFGYDPNKIKDTPQDCEVISNSQLAAMMSMSGMQQALTNQFPDLELKSPLALNPFTSVLDTLKKLLELYF 191 (193)
Q Consensus 112 ~~~~~~~~l~~~G~d~~~l~~t~Q~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (193)
..+.+.+.+++.|+.++.++.+.-. -.||++++.+...||...+. .-|||+||-.-|.--.+.-|
T Consensus 385 i~~~i~~~L~~a~~~~d~VvLvGGs------------SriP~V~~~l~~~fg~~~v~---~g~~~~sVa~Gla~~a~~~~ 449 (450)
T PRK11678 385 ILELVQLALDQAQVKPDVIYLTGGS------------ARSPLIRAALAQQLPGIPIV---GGDDFGSVTAGLARWAQVVF 449 (450)
T ss_pred HHHHHHHHHHHcCCCCCEEEEcCcc------------cchHHHHHHHHHHCCCCcEE---eCCCcchHHHHHHHHHHhhc
Confidence 3344455566677776555444222 25899999999999986544 57999999987766554433
No 15
>PHA02517 putative transposase OrfB; Reviewed
Probab=50.85 E-value=76 Score=26.91 Aligned_cols=62 Identities=8% Similarity=0.011 Sum_probs=41.4
Q ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEcCCCCCcCChHHHHHHhccchhhhhhhc
Q 029469 97 SFIQIYSRTPTPGPEFIEKYKSYLANFGYDPNKIKDTPQDCEVISNSQLAAMMSMSGMQQALTN 160 (193)
Q Consensus 97 ~~lWILSRtp~ls~e~~~~~~~~l~~~G~d~~~l~~t~Q~C~~~~~~~~~~~~~~~~~~~~~~~ 160 (193)
-..|.++..++ ++.+.+.+...+...|....-++.+++++.+ .+.+....+..-|+.+.++.
T Consensus 140 i~~~~~~~~~~-~~~~~~~l~~a~~~~~~~~~~i~~sD~G~~y-~s~~~~~~~~~~gi~~~~~~ 201 (277)
T PHA02517 140 IVGWRVSSSMD-TDFVLDALEQALWARGRPGGLIHHSDKGSQY-VSLAYTQRLKEAGIRASTGS 201 (277)
T ss_pred eeecccCCCCC-hHHHHHHHHHHHHhcCCCcCcEeeccccccc-chHHHHHHHHHcCcccccCC
Confidence 45688877655 4456777777888888765567778888887 44455555655566655443
No 16
>PRK10727 DNA-binding transcriptional regulator GalR; Provisional
Probab=50.84 E-value=13 Score=32.06 Aligned_cols=60 Identities=15% Similarity=0.250 Sum_probs=39.9
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEE---cCC----C--CCcCChHHHHHHhccchhhhhhhcC
Q 029469 100 QIYSRTPTPGPEFIEKYKSYLANFGYDPNKIKD---TPQ----D--CEVISNSQLAAMMSMSGMQQALTNQ 161 (193)
Q Consensus 100 WILSRtp~ls~e~~~~~~~~l~~~G~d~~~l~~---t~Q----~--C~~~~~~~~~~~~~~~~~~~~~~~~ 161 (193)
-+|...+.+++++.+++++.++++||.++.... ... . ++...+.-.+.|+. |+++++...
T Consensus 20 rvLn~~~~Vs~~tr~rV~~~a~elgY~pn~~ar~l~~~~~~~Igvi~~~~~~~f~~~~~~--gi~~~~~~~ 88 (343)
T PRK10727 20 RVINNSPKASEASRLAVHSAMESLSYHPNANARALAQQSTETVGLVVGDVSDPFFGAMVK--AVEQVAYHT 88 (343)
T ss_pred HHhCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHhhhhCCCCeEEEEeCCCCcchHHHHHH--HHHHHHHHc
Confidence 356677889999999999999999999875421 111 1 33333444555665 777776543
No 17
>PRK09492 treR trehalose repressor; Provisional
Probab=49.88 E-value=15 Score=31.10 Aligned_cols=29 Identities=17% Similarity=0.392 Sum_probs=25.8
Q ss_pred EEeCCCCCCHHHHHHHHHHHHhcCCCCCC
Q 029469 101 IYSRTPTPGPEFIEKYKSYLANFGYDPNK 129 (193)
Q Consensus 101 ILSRtp~ls~e~~~~~~~~l~~~G~d~~~ 129 (193)
+|.+.+.+++++.+++.+.++++||-++.
T Consensus 24 vLn~~~~vs~~tr~rV~~~a~elgY~pn~ 52 (315)
T PRK09492 24 VLNNESGVSEETRERVEAVINQHGFSPSK 52 (315)
T ss_pred HhCCCCCCCHHHHHHHHHHHHHHCCCcCH
Confidence 56777889999999999999999998864
No 18
>PF10346 Con-6: Conidiation protein 6; InterPro: IPR018824 This entry represents a conserved region found in fungal conidiation-specific protein 6 []. This protein is expressed approximately 6 hours after the induction of development and is induced just prior to major constriction-chain growth [].
Probab=48.29 E-value=25 Score=21.94 Aligned_cols=21 Identities=19% Similarity=0.327 Sum_probs=18.8
Q ss_pred CCCCCCHHHHHHHHHHHHhcC
Q 029469 104 RTPTPGPEFIEKYKSYLANFG 124 (193)
Q Consensus 104 Rtp~ls~e~~~~~~~~l~~~G 124 (193)
..|.+|++.++...+.++++|
T Consensus 15 ~NPnvSeeaK~~A~~~Le~~g 35 (36)
T PF10346_consen 15 HNPNVSEEAKQHAREKLEEMG 35 (36)
T ss_pred cCCCcCHHHHHHHHHHHHHcc
Confidence 479999999999999999876
No 19
>PF11423 Repressor_Mnt: Regulatory protein Mnt; InterPro: IPR024421 Mnt is a repressor which is involved in the genetic switch between lysogenic and lytic growth in bacteriophage P22. The C-terminal domain of the protein consists of a dimer of two antiparallel coiled coils with a right handed twist, which is both stronger and has closer inter-helical separation compared with those found in left-handed coiled coils []. This entry is represented by Bacteriophage P22, Mnt. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; PDB: 1QEY_C 1MNT_B.
Probab=47.20 E-value=13 Score=22.24 Aligned_cols=9 Identities=44% Similarity=0.781 Sum_probs=7.4
Q ss_pred hHHHHHHHH
Q 029469 179 VLDTLKKLL 187 (193)
Q Consensus 179 ~~~~~~~~~ 187 (193)
||||||.+-
T Consensus 19 VfetLK~~Y 27 (30)
T PF11423_consen 19 VFETLKDMY 27 (30)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 899999864
No 20
>PRK10703 DNA-binding transcriptional repressor PurR; Provisional
Probab=46.95 E-value=15 Score=31.58 Aligned_cols=57 Identities=9% Similarity=0.151 Sum_probs=37.0
Q ss_pred EeCCCCCCHHHHHHHHHHHHhcCCCCCCeEE---cCCC------CCcCChHHHHHHhccchhhhhhhc
Q 029469 102 YSRTPTPGPEFIEKYKSYLANFGYDPNKIKD---TPQD------CEVISNSQLAAMMSMSGMQQALTN 160 (193)
Q Consensus 102 LSRtp~ls~e~~~~~~~~l~~~G~d~~~l~~---t~Q~------C~~~~~~~~~~~~~~~~~~~~~~~ 160 (193)
|...+.+++++++++++.++++||-++.... .... -+...+.-.+.++. |+++++..
T Consensus 22 Ln~~~~vs~~tr~~V~~~a~elgY~pn~~a~~l~~~~~~~i~vi~~~~~~~~~~~~~~--gi~~~~~~ 87 (341)
T PRK10703 22 INKTRFVAEETRNAVWAAIKELHYSPSAVARSLKVNHTKSIGLLATSSEAPYFAEIIE--AVEKNCYQ 87 (341)
T ss_pred HcCCCCCCHHHHHHHHHHHHHHCCCcCHHHHHHhhCCCCeEEEEeCCCCCchHHHHHH--HHHHHHHH
Confidence 4566789999999999999999999874311 1110 12223334555555 77777654
No 21
>PRK09526 lacI lac repressor; Reviewed
Probab=45.92 E-value=18 Score=31.09 Aligned_cols=59 Identities=12% Similarity=0.242 Sum_probs=38.5
Q ss_pred EEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEE---cCCC------CCcCChHHHHHHhccchhhhhhhcC
Q 029469 101 IYSRTPTPGPEFIEKYKSYLANFGYDPNKIKD---TPQD------CEVISNSQLAAMMSMSGMQQALTNQ 161 (193)
Q Consensus 101 ILSRtp~ls~e~~~~~~~~l~~~G~d~~~l~~---t~Q~------C~~~~~~~~~~~~~~~~~~~~~~~~ 161 (193)
+|...+.+++++.+++++.++++||-++.... ..+. .+...+.-.+.++. |+++++...
T Consensus 25 vLn~~~~vs~~tr~rV~~~a~elgY~pn~~a~~l~~~~~~~Igvv~~~~~~~~~~~~~~--gi~~~a~~~ 92 (342)
T PRK09526 25 VLNQASHVSAKTREKVEAAMAELNYVPNRVAQQLAGKQSLTIGLATTSLALHAPSQIAA--AIKSRADQL 92 (342)
T ss_pred HhcCCCCCCHHHHHHHHHHHHHHCCCcCHHHHHhhcCCCceEEEEeCCCCcccHHHHHH--HHHHHHHHC
Confidence 45667889999999999999999998874321 1111 12223333455655 777777643
No 22
>TIGR01481 ccpA catabolite control protein A. Catabolite control protein A is a LacI family global transcriptional regulator found in Gram-positive bacteria. CcpA is involved in repressing carbohydrate utilization genes [ex: alpha-amylase (amyE), acetyl-coenzyme A synthase (acsA)] and in activating genes involved in transporting excess carbon from the cell [ex: acetate kinase (ackA), alpha-acetolactate synthase (alsS)]. Additionally, disruption of CcpA in Bacillus megaterium, Staphylococcus xylosus, Lactobacillus casei and Lactocacillus pentosus also decreases growth rate, which suggests CcpA is involved in the regulation of other metabolic pathways.
Probab=45.31 E-value=17 Score=31.00 Aligned_cols=58 Identities=21% Similarity=0.319 Sum_probs=38.7
Q ss_pred EEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEE---cCC-C-----CCcCChHHHHHHhccchhhhhhhc
Q 029469 101 IYSRTPTPGPEFIEKYKSYLANFGYDPNKIKD---TPQ-D-----CEVISNSQLAAMMSMSGMQQALTN 160 (193)
Q Consensus 101 ILSRtp~ls~e~~~~~~~~l~~~G~d~~~l~~---t~Q-~-----C~~~~~~~~~~~~~~~~~~~~~~~ 160 (193)
+|...+.+++++.+++++.++++||-++.... ... . .+...+.-...++. |+++++..
T Consensus 21 vLn~~~~vs~~tr~rV~~~a~~lgY~pn~~a~~l~~~~~~~Igvv~~~~~~~f~~~l~~--~i~~~~~~ 87 (329)
T TIGR01481 21 VVNGNPNVKPATRKKVLEVIKRLDYRPNAVARGLASKRTTTVGVIIPDISNIYYAELAR--GIEDIATM 87 (329)
T ss_pred HhCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHhhCCCCEEEEEeCCCCchhHHHHHH--HHHHHHHH
Confidence 45667789999999999999999998864311 111 1 33334444556655 77776654
No 23
>TIGR02986 restrict_Alw26I type II restriction endonuclease, Alw26I/Eco31I/Esp3I family. Members of this family are type II restriction endonucleases of the Alw26I/Eco31I/Esp3I family. Characterized specificities of three members are GGTCTC, CGTCTC, and the shared subsequence GTCTC.
Probab=44.38 E-value=40 Score=31.59 Aligned_cols=92 Identities=18% Similarity=0.207 Sum_probs=62.8
Q ss_pred CceEEEEEeCCCCCC-----HHHHHHHHHHHHhcCCCCC----------CeEEcCC-CCCcCChHH-HHHHhccchhhhh
Q 029469 95 DKSFIQIYSRTPTPG-----PEFIEKYKSYLANFGYDPN----------KIKDTPQ-DCEVISNSQ-LAAMMSMSGMQQA 157 (193)
Q Consensus 95 ~~~~lWILSRtp~ls-----~e~~~~~~~~l~~~G~d~~----------~l~~t~Q-~C~~~~~~~-~~~~~~~~~~~~~ 157 (193)
+.+.-|.-+-.+..+ .+-++-..+.|+++|++.. .|..|.+ .|..+.-.. ++++---.-.-..
T Consensus 27 dG~I~W~~~s~~~~gF~~~~q~R~aWw~~Ka~elGi~~~~~~~~s~~ar~IHPT~~kpC~~CG~~m~i~Y~Ypn~~~~~r 106 (424)
T TIGR02986 27 DGRISWQVSSKKTTGFYTYYQARRAWWEQKADELGIPSIENGRYSKAARLIHPTGVKPCQTCGKTMSLGYSYPNHNFAKR 106 (424)
T ss_pred CCceEEEecCCCCccchHHHHHHHHHHHHHHHHhCCCCCcccHHHHHHHHhCCCCCcchHhcCCeeeeeeecCcHHHHHH
Confidence 557789999998888 7788888899999999954 2344444 365543222 2222222233457
Q ss_pred hhcCCCCccccCccccCCccchHHHHHHHHHhh
Q 029469 158 LTNQFPDLELKSPLALNPFTSVLDTLKKLLELY 190 (193)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (193)
|++.||++.. .-+|-+++.|-||.|+..+
T Consensus 107 l~k~~~~~~~----~~~~~~~I~d~l~~l~~~~ 135 (424)
T TIGR02986 107 LKKTFPDETF----KDQLIEDIYDILKSLVSEN 135 (424)
T ss_pred Hhcccccccc----ccchHHHHHHHHHHHHhhc
Confidence 7888998764 3478899999999987653
No 24
>PRK10401 DNA-binding transcriptional regulator GalS; Provisional
Probab=44.28 E-value=17 Score=31.42 Aligned_cols=59 Identities=15% Similarity=0.268 Sum_probs=39.6
Q ss_pred EEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEE---cCC-C-----CCcCChHHHHHHhccchhhhhhhcC
Q 029469 101 IYSRTPTPGPEFIEKYKSYLANFGYDPNKIKD---TPQ-D-----CEVISNSQLAAMMSMSGMQQALTNQ 161 (193)
Q Consensus 101 ILSRtp~ls~e~~~~~~~~l~~~G~d~~~l~~---t~Q-~-----C~~~~~~~~~~~~~~~~~~~~~~~~ 161 (193)
+|.+.+.+++++.+++.+.++++||-++.... ... . ++...+.-.+.+++ |+++++...
T Consensus 21 vLn~~~~Vs~~tr~kV~~~a~elgY~pn~~a~~l~~~~~~~Igvi~~~~~~~f~~~l~~--gi~~~~~~~ 88 (346)
T PRK10401 21 VLNNSALVSADTREAVMKAVSELGYRPNANAQALATQVSDTIGVVVMDVSDAFFGALVK--AVDLVAQQH 88 (346)
T ss_pred HHCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHhhcCCCCEEEEEeCCCCCccHHHHHH--HHHHHHHHC
Confidence 35667789999999999999999998874311 000 0 33334444566666 887776654
No 25
>smart00354 HTH_LACI helix_turn _helix lactose operon repressor.
Probab=44.11 E-value=21 Score=24.40 Aligned_cols=28 Identities=25% Similarity=0.342 Sum_probs=23.3
Q ss_pred EeCCCCCCHHHHHHHHHHHHhcCCCCCC
Q 029469 102 YSRTPTPGPEFIEKYKSYLANFGYDPNK 129 (193)
Q Consensus 102 LSRtp~ls~e~~~~~~~~l~~~G~d~~~ 129 (193)
|.-.+.++++..+++.+.++++||.++.
T Consensus 21 ln~~~~v~~~t~~~i~~~~~~~gy~~~~ 48 (70)
T smart00354 21 LNGNGRVSEETREKVLAAMEELGYIPNR 48 (70)
T ss_pred HCCCCCCCHHHHHHHHHHHHHhCCCCCH
Confidence 3445678999999999999999997653
No 26
>COG3040 Blc Bacterial lipocalin [Cell envelope biogenesis, outer membrane]
Probab=42.96 E-value=53 Score=27.36 Aligned_cols=76 Identities=13% Similarity=0.208 Sum_probs=48.0
Q ss_pred EEecCCCCeEEeeeeeEEEcCCcccc--cchhhhccceeeeceeEEEEecccCCCCCCEEEEEEcCCCEEEEEeecCceE
Q 029469 21 CVHGGPDGYITGIRGNVQCLPEEELE--KNVTDLEKQEMIKGKCYLRFPTLPFIPKEPYDVIATDYDNFALVSGAKDKSF 98 (193)
Q Consensus 21 C~~~~~dG~~~~~~G~a~v~n~~~~a--k~~~~~~g~a~~~~k~~v~F~~~p~~p~~dY~Vl~TDYdnYAiV~~c~~~~~ 98 (193)
|... ..-|....+|.+.|.|.+... +.+..++|+|.+.+.+.-.--...| .+++. -+|-+++- +.+|
T Consensus 54 c~~v-tA~Y~l~d~~~I~V~n~c~~~~~~~~~~ieGkA~i~~~~~~a~LkVsF--~~pF~------g~Y~Vl~~--d~eY 122 (174)
T COG3040 54 CVQV-TATYSLRDDGGISVINRCRTGDGGKWSQIEGKAKIVDNATRAKLKVSF--FGPFY------GDYWVLAL--DPEY 122 (174)
T ss_pred ceee-EeEEEEecCCceEEEeccccCCCCCceeecceEEEecCccccEEEEEe--cCCcc------ccEEEEEE--CCCc
Confidence 5532 234555678899999988532 2678899999987765422212343 34443 35666654 5678
Q ss_pred EEEEeCCCC
Q 029469 99 IQIYSRTPT 107 (193)
Q Consensus 99 lWILSRtp~ 107 (193)
-|-++-+|+
T Consensus 123 s~aiVgsPd 131 (174)
T COG3040 123 SWAIVGSPD 131 (174)
T ss_pred cEEEEeCCC
Confidence 888887775
No 27
>PRK10423 transcriptional repressor RbsR; Provisional
Probab=42.89 E-value=19 Score=30.55 Aligned_cols=58 Identities=10% Similarity=0.255 Sum_probs=38.4
Q ss_pred EeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEc---CC----C--CCcCChHHHHHHhccchhhhhhhcC
Q 029469 102 YSRTPTPGPEFIEKYKSYLANFGYDPNKIKDT---PQ----D--CEVISNSQLAAMMSMSGMQQALTNQ 161 (193)
Q Consensus 102 LSRtp~ls~e~~~~~~~~l~~~G~d~~~l~~t---~Q----~--C~~~~~~~~~~~~~~~~~~~~~~~~ 161 (193)
|+..+.+++++.+++++.++++||-++..... .. . .+...+.-.+.++. |+++++...
T Consensus 19 Ln~~~~vs~~tr~rV~~~a~~lgY~pn~~a~~l~~~~~~~Igvi~~~~~~~~~~~~~~--gi~~~~~~~ 85 (327)
T PRK10423 19 INKDRFVSEAITAKVEAAIKELNYAPSALARSLKLNQTRTIGMLITASTNPFYSELVR--GVERSCFER 85 (327)
T ss_pred hCCCCCCCHHHHHHHHHHHHHHCCCccHHHHHHhhCCCCeEEEEeCCCCCCcHHHHHH--HHHHHHHHc
Confidence 45567899999999999999999988753221 01 0 23333333455655 888877754
No 28
>PRK14987 gluconate operon transcriptional regulator; Provisional
Probab=42.37 E-value=24 Score=30.22 Aligned_cols=59 Identities=17% Similarity=0.311 Sum_probs=40.4
Q ss_pred EEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEc---CC----C--CCcCChHHHHHHhccchhhhhhhcC
Q 029469 101 IYSRTPTPGPEFIEKYKSYLANFGYDPNKIKDT---PQ----D--CEVISNSQLAAMMSMSGMQQALTNQ 161 (193)
Q Consensus 101 ILSRtp~ls~e~~~~~~~~l~~~G~d~~~l~~t---~Q----~--C~~~~~~~~~~~~~~~~~~~~~~~~ 161 (193)
+|+..+.+++++.+++++.++++||.++..... .. . .+...+.-.+.++. |+++++...
T Consensus 25 vLn~~~~vs~~tr~rV~~~a~elgY~pn~~a~~l~~~~~~~Igvi~~~~~~~~~~~~~~--gi~~~~~~~ 92 (331)
T PRK14987 25 FLRNPEQVSVALRGKIAAALDELGYIPNRAPDILSNATSRAIGVLLPSLTNQVFAEVLR--GIESVTDAH 92 (331)
T ss_pred hhCCCCCCCHHHHHHHHHHHHHhCCCccHHHHHHhhCCCCEEEEEeCCCcchhHHHHHH--HHHHHHHHC
Confidence 466778899999999999999999988754211 01 0 23344445666666 888877643
No 29
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional
Probab=41.66 E-value=26 Score=30.02 Aligned_cols=58 Identities=19% Similarity=0.236 Sum_probs=38.8
Q ss_pred EeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEc---CCC------CCcCChHHHHHHhccchhhhhhhcC
Q 029469 102 YSRTPTPGPEFIEKYKSYLANFGYDPNKIKDT---PQD------CEVISNSQLAAMMSMSGMQQALTNQ 161 (193)
Q Consensus 102 LSRtp~ls~e~~~~~~~~l~~~G~d~~~l~~t---~Q~------C~~~~~~~~~~~~~~~~~~~~~~~~ 161 (193)
|++.+.+++++.+++++.++++||-++..-.. ..+ .+...+.-...++. |+++++...
T Consensus 27 Ln~~~~vs~~tr~~V~~~a~elgY~p~~~a~~l~~~~~~~Igvv~~~~~~~~~~~i~~--gi~~~a~~~ 93 (342)
T PRK10014 27 LSGKGRISTATGERVNQAIEELGFVRNRQASALRGGQSGVIGLIVRDLSAPFYAELTA--GLTEALEAQ 93 (342)
T ss_pred HCCCCCCCHHHHHHHHHHHHHhCCCcCHHHHhhccCCCCEEEEEeCCCccchHHHHHH--HHHHHHHHc
Confidence 56778899999999999999999998743211 111 23333334555555 777777643
No 30
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=41.01 E-value=26 Score=31.00 Aligned_cols=60 Identities=23% Similarity=0.376 Sum_probs=41.8
Q ss_pred EEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEE---cCCC------CCcCChHHHHHHhccchhhhhhhcCC
Q 029469 101 IYSRTPTPGPEFIEKYKSYLANFGYDPNKIKD---TPQD------CEVISNSQLAAMMSMSGMQQALTNQF 162 (193)
Q Consensus 101 ILSRtp~ls~e~~~~~~~~l~~~G~d~~~l~~---t~Q~------C~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (193)
+|...+.+++++++++++.++++||-++..-. ..++ =+..++.--+.|+. |+++++..+-
T Consensus 20 vln~~~~Vs~eTr~kV~~a~~elgY~pN~~Ar~L~~~~s~~Ig~i~p~~~~~~~~~i~~--gi~~~~~~~g 88 (333)
T COG1609 20 VLNGSPYVSEETREKVLAAIKELGYRPNAVARSLRTGRTKTIGLVVPDITNPFFAEILK--GIEEAAREAG 88 (333)
T ss_pred HHcCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHhCCCCEEEEEeCCCCCchHHHHHH--HHHHHHHHcC
Confidence 46677899999999999999999999875321 1111 23444556667776 8877776543
No 31
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=38.48 E-value=55 Score=32.97 Aligned_cols=35 Identities=26% Similarity=0.667 Sum_probs=28.8
Q ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEcCC
Q 029469 97 SFIQIYSRTPTPGPEFIEKYKSYLANFGYDPNKIKDTPQ 135 (193)
Q Consensus 97 ~~lWILSRtp~ls~e~~~~~~~~l~~~G~d~~~l~~t~Q 135 (193)
..+|+| |-|-..+ ++++..+.++|+++++++++|-
T Consensus 789 S~Lwll-rfPa~ge---~rf~ty~~~~Gl~p~riifs~v 823 (966)
T KOG4626|consen 789 SVLWLL-RFPAVGE---QRFRTYAEQLGLEPDRIIFSPV 823 (966)
T ss_pred ceeEEE-eccccch---HHHHHHHHHhCCCccceeeccc
Confidence 668888 6666665 7899999999999999998764
No 32
>TIGR02417 fruct_sucro_rep D-fructose-responsive transcription factor. Members of this family belong the lacI helix-turn-helix family (pfam00356) of DNA-binding transcriptional regulators. All members are from the proteobacteria. Characterized members act as positive and negative transcriptional regulators of fructose and sucrose transport and metabolism. Sucrose is a disaccharide composed of fructose and glucose; D-fructose-1-phosphate rather than an intact sucrose moiety has been shown to act as the inducer.
Probab=36.29 E-value=28 Score=29.67 Aligned_cols=29 Identities=21% Similarity=0.314 Sum_probs=24.2
Q ss_pred EeCCC---CCCHHHHHHHHHHHHhcCCCCCCe
Q 029469 102 YSRTP---TPGPEFIEKYKSYLANFGYDPNKI 130 (193)
Q Consensus 102 LSRtp---~ls~e~~~~~~~~l~~~G~d~~~l 130 (193)
|...+ .+++++.+++++.++++||-++..
T Consensus 20 Ln~~~~~~~vs~~tr~rV~~~a~~lgY~pn~~ 51 (327)
T TIGR02417 20 INGKAKEYRISQETVERVMAVVREQGYQPNIH 51 (327)
T ss_pred HcCCCCCCccCHHHHHHHHHHHHHhCCCCCHH
Confidence 44554 599999999999999999988753
No 33
>PRK10339 DNA-binding transcriptional repressor EbgR; Provisional
Probab=35.48 E-value=36 Score=29.12 Aligned_cols=30 Identities=10% Similarity=0.190 Sum_probs=24.8
Q ss_pred EEeCCC--CCCHHHHHHHHHHHHhcCCCCCCe
Q 029469 101 IYSRTP--TPGPEFIEKYKSYLANFGYDPNKI 130 (193)
Q Consensus 101 ILSRtp--~ls~e~~~~~~~~l~~~G~d~~~l 130 (193)
+|...+ .+++++.+++++.++++||-++..
T Consensus 21 vln~~~~~~vs~~tr~rV~~~a~~lgY~pn~~ 52 (327)
T PRK10339 21 VLNDDPTLNVKEETKHRILEIAEKLEYKTSSA 52 (327)
T ss_pred hhcCCCCCCcCHHHHHHHHHHHHHhCCCCchh
Confidence 455555 399999999999999999987763
No 34
>cd01392 HTH_LacI Helix-turn-helix (HTH) DNA binding domain of the LacI family of transcriptional regulators. HTH-DNA binding domain of the LacI (lactose operon repressor) family of bacterial transcriptional regulators and their putative homologs found in plants. The LacI family has more than 500 members distributed among almost all bacterial species. The monomeric proteins of the LacI family contain common structural features that include a small DNA-binding domain with a helix-turn-helix motif in the N-terminus, a regulatory ligand-binding domain which exhibits the type I periplasmic binding protein fold in the C-terminus for oligomerization and for effector binding, and an approximately 18-amino acid linker connecting these two functional domains. In LacI-like transcriptional regulators, the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. When the C-terminal domain of the LacI family repre
Probab=34.51 E-value=38 Score=21.11 Aligned_cols=27 Identities=26% Similarity=0.391 Sum_probs=22.6
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCCCe
Q 029469 104 RTPTPGPEFIEKYKSYLANFGYDPNKI 130 (193)
Q Consensus 104 Rtp~ls~e~~~~~~~~l~~~G~d~~~l 130 (193)
-.+.++++..+++.+.++++||.++.+
T Consensus 20 g~~~vs~~~~~~i~~~~~~l~~~~~~~ 46 (52)
T cd01392 20 GKPRVSEETRERVLAAAEELGYRPNAA 46 (52)
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCCHH
Confidence 345789999999999999999987653
No 35
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional
Probab=33.96 E-value=32 Score=29.25 Aligned_cols=52 Identities=13% Similarity=0.241 Sum_probs=34.0
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCCeEE---cCCC------CCcCChHHHHHHhccchhhhhhhc
Q 029469 107 TPGPEFIEKYKSYLANFGYDPNKIKD---TPQD------CEVISNSQLAAMMSMSGMQQALTN 160 (193)
Q Consensus 107 ~ls~e~~~~~~~~l~~~G~d~~~l~~---t~Q~------C~~~~~~~~~~~~~~~~~~~~~~~ 160 (193)
.+++++.+++++.++++||-++.... .... .+...+.-.+.+++ |+++++..
T Consensus 29 ~Vs~~tr~rV~~~a~elgY~pn~~a~~l~~~~~~~Igvv~~~~~~~~~~~l~~--gi~~~~~~ 89 (328)
T PRK11303 29 RVSDKTVEKVMAVVREHNYHPNAVAAGLRAGRTRSIGLIIPDLENTSYARIAK--YLERQARQ 89 (328)
T ss_pred CcCHHHHHHHHHHHHHhCCCCCHHHHHhhcCCCceEEEEeCCCCCchHHHHHH--HHHHHHHH
Confidence 69999999999999999998874311 1111 12233444555655 77777654
No 36
>PF15641 Tox-MPTase5: Metallopeptidase toxin 5
Probab=32.75 E-value=22 Score=26.78 Aligned_cols=24 Identities=25% Similarity=0.433 Sum_probs=19.5
Q ss_pred hhhhhhcCCCCccccCccccCCcc
Q 029469 154 MQQALTNQFPDLELKSPLALNPFT 177 (193)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~ 177 (193)
+.+.|...||+|.|.---++|||.
T Consensus 17 i~ai~~edf~~l~lt~~p~y~~~~ 40 (109)
T PF15641_consen 17 IDAIISEDFPYLNLTHIPQYNYFM 40 (109)
T ss_pred HHHHHHhhcccccceeccccChhh
Confidence 445677899999999888888884
No 37
>TIGR02405 trehalos_R_Ecol trehalose operon repressor, proteobacterial. This family consists of repressors of the LacI family typically associated with trehalose utilization operons. Trehalose is imported as trehalose-6-phosphate and then hydrolyzed by alpha,alpha-phosphotrehalase to glucose and glucose-6-P. This family includes repressors mostly from Gammaproteobacteria and does not include the GntR family TreR of Bacillus subtilis
Probab=32.43 E-value=36 Score=28.98 Aligned_cols=59 Identities=17% Similarity=0.253 Sum_probs=38.2
Q ss_pred EEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEE---cCCC------CCcCChHHHHHHhccchhhhhhhcC
Q 029469 101 IYSRTPTPGPEFIEKYKSYLANFGYDPNKIKD---TPQD------CEVISNSQLAAMMSMSGMQQALTNQ 161 (193)
Q Consensus 101 ILSRtp~ls~e~~~~~~~~l~~~G~d~~~l~~---t~Q~------C~~~~~~~~~~~~~~~~~~~~~~~~ 161 (193)
+|.+.+.+++++.+++.+.++++||-++.... ..++ .+...+.--+.|+. |+++++.+.
T Consensus 21 ~Ln~~~~vs~~tr~rV~~~a~~lgY~pn~~a~~l~~~~~~~Ig~i~~~~~~~~~~~~~~--~i~~~~~~~ 88 (311)
T TIGR02405 21 VLNNEPKVSIETRERVEQVIQQSGFVPSKSARAMRGGSDKVVAVIVSRLDSPSENLAVS--GMLPVFYTA 88 (311)
T ss_pred HhCCCCCCCHHHHHHHHHHHHHHCCCcCHHHHHhhcCCCCEEEEEeCCcccccHHHHHH--HHHHHHHHC
Confidence 35667789999999999999999998874321 1111 33323333444554 777776653
No 38
>PRK11041 DNA-binding transcriptional regulator CytR; Provisional
Probab=29.20 E-value=56 Score=27.39 Aligned_cols=53 Identities=9% Similarity=0.281 Sum_probs=34.2
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCCeEEc---CCC----C--CcCChHHHHHHhccchhhhhhhcC
Q 029469 107 TPGPEFIEKYKSYLANFGYDPNKIKDT---PQD----C--EVISNSQLAAMMSMSGMQQALTNQ 161 (193)
Q Consensus 107 ~ls~e~~~~~~~~l~~~G~d~~~l~~t---~Q~----C--~~~~~~~~~~~~~~~~~~~~~~~~ 161 (193)
.+++++++++++.++++||-++..-.. ..+ + +...+.-...|.. |+++++...
T Consensus 3 ~Vs~~Tr~rV~~~a~elgY~pn~~a~~l~~~~~~~ig~v~~~~~~~~~~~~~~--gi~~~~~~~ 64 (309)
T PRK11041 3 KVSQATRQRVEQAVLEVGYSPQSLGRNLKRNESRTILVIVPDICDPFFSEIIR--GIEVTAAEH 64 (309)
T ss_pred cCCHHHHHHHHHHHHHHCCCcCHHHHHhhcCCCcEEEEEeCCCcCccHHHHHH--HHHHHHHHC
Confidence 489999999999999999999853221 011 1 1122223455555 888887754
No 39
>cd00384 ALAD_PBGS Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. They either contain a cysteine-rich zinc binding site (consensus DXCXCX(Y/F)X3G(H/Q)CG) or an aspartate-rich magnesium binding site (consensus DXALDX(Y/F)X3G(H/Q)DG). The cyste
Probab=28.77 E-value=24 Score=31.94 Aligned_cols=66 Identities=14% Similarity=0.238 Sum_probs=38.4
Q ss_pred CHHHHHHHHHHHHhcCCCCCCeEEcCCC----CCcCChHHHHHHhccchhhhhhhcCCCCccccCccccCCccc
Q 029469 109 GPEFIEKYKSYLANFGYDPNKIKDTPQD----CEVISNSQLAAMMSMSGMQQALTNQFPDLELKSPLALNPFTS 178 (193)
Q Consensus 109 s~e~~~~~~~~l~~~G~d~~~l~~t~Q~----C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (193)
+-+.+.+..+.+.+.|+.-=-|.-++.. +....+.+ -.+ +-.-.++.+.||+|.+-..|.++||||
T Consensus 49 s~d~l~~~~~~~~~~Gi~~v~LFgv~~~Kd~~gs~A~~~~--g~v--~~air~iK~~~p~l~vi~DvcLc~YT~ 118 (314)
T cd00384 49 SVDSLVEEAEELADLGIRAVILFGIPEHKDEIGSEAYDPD--GIV--QRAIRAIKEAVPELVVITDVCLCEYTD 118 (314)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCcccccCCC--ChH--HHHHHHHHHhCCCcEEEEeeeccCCCC
Confidence 4455555566666778764333333321 11111111 111 123346889999999999999999997
No 40
>PRK09283 delta-aminolevulinic acid dehydratase; Validated
Probab=28.50 E-value=25 Score=32.03 Aligned_cols=66 Identities=17% Similarity=0.289 Sum_probs=38.2
Q ss_pred CHHHHHHHHHHHHhcCCCCCCeEEcCCC----CCcCChHHHHHHhccchhhhhhhcCCCCccccCccccCCccc
Q 029469 109 GPEFIEKYKSYLANFGYDPNKIKDTPQD----CEVISNSQLAAMMSMSGMQQALTNQFPDLELKSPLALNPFTS 178 (193)
Q Consensus 109 s~e~~~~~~~~l~~~G~d~~~l~~t~Q~----C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (193)
+-+.+.+..+.+.+.|+..=-+.-++.. +....+.+ + .+ +-.-.++...||+|.+-..|.++||||
T Consensus 57 s~d~l~~~v~~~~~~Gi~av~LFgv~~~Kd~~gs~A~~~~-g-~v--~rair~iK~~~p~l~vi~DVcLc~YT~ 126 (323)
T PRK09283 57 SIDLLVKEAEEAVELGIPAVALFGVPELKDEDGSEAYNPD-G-LV--QRAIRAIKKAFPELGVITDVCLDEYTS 126 (323)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCcCCCCCcccccccCCC-C-HH--HHHHHHHHHhCCCcEEEEeeeccCCCC
Confidence 3444555556666778774333333221 11111111 0 11 123346789999999999999999998
No 41
>PF07409 GP46: Phage protein GP46; InterPro: IPR010877 This entry is represented by Bacteriophage Mu, Gp46. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=28.29 E-value=52 Score=25.47 Aligned_cols=25 Identities=12% Similarity=0.150 Sum_probs=19.1
Q ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHh
Q 029469 97 SFIQIYSRTPTPGPEFIEKYKSYLAN 122 (193)
Q Consensus 97 ~~lWILSRtp~ls~e~~~~~~~~l~~ 122 (193)
+-+|+|.|++..+ ++...+.+++++
T Consensus 44 SRLwlL~R~K~t~-~v~~~A~~ya~E 68 (116)
T PF07409_consen 44 SRLWLLRREKLTP-RVRRRAEDYAEE 68 (116)
T ss_pred cceeEEEeecchH-HHHHHHHHHHHH
Confidence 5689999999654 577777777764
No 42
>PF12651 RHH_3: Ribbon-helix-helix domain
Probab=28.00 E-value=25 Score=22.38 Aligned_cols=25 Identities=24% Similarity=0.266 Sum_probs=21.9
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCCeE
Q 029469 107 TPGPEFIEKYKSYLANFGYDPNKIK 131 (193)
Q Consensus 107 ~ls~e~~~~~~~~l~~~G~d~~~l~ 131 (193)
.++++.++++.+++++.|++.++++
T Consensus 8 ~l~~el~~~L~~ls~~t~i~~S~Ll 32 (44)
T PF12651_consen 8 SLDKELYEKLKELSEETGIPKSKLL 32 (44)
T ss_pred ecCHHHHHHHHHHHHHHCCCHHHHH
Confidence 5789999999999999999887764
No 43
>PF01402 RHH_1: Ribbon-helix-helix protein, copG family; InterPro: IPR002145 CopG, also known as RepA, is responsible for the regulation of plasmid copy number. It binds to the repAB promoter and controls synthesis of the plasmid replication initiator protein RepB. Many bacterial transcription regulation proteins bind DNA through a 'helix-turn-helix' motif, nevertheless CopG displays a fully defined HTH-motif structure that is involved not in DNA-binding, but in the maintenance of the intrinsic dimeric functional structure and cooperativity [, ].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2BJ3_B 2BJ8_A 2BJ1_A 2BJ9_A 2BJ7_B 1EA4_L 2CPG_C 1B01_B 2BA3_A 2K9I_B ....
Probab=27.52 E-value=12 Score=22.43 Aligned_cols=24 Identities=13% Similarity=0.247 Sum_probs=19.9
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCCe
Q 029469 107 TPGPEFIEKYKSYLANFGYDPNKI 130 (193)
Q Consensus 107 ~ls~e~~~~~~~~l~~~G~d~~~l 130 (193)
.++++.++++.+.+++.|.+.+.+
T Consensus 5 ~l~~~~~~~l~~~a~~~g~s~s~~ 28 (39)
T PF01402_consen 5 RLPDELYERLDELAKELGRSRSEL 28 (39)
T ss_dssp EEEHHHHHHHHHHHHHHTSSHHHH
T ss_pred EeCHHHHHHHHHHHHHHCcCHHHH
Confidence 367899999999999999876654
No 44
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional
Probab=27.16 E-value=27 Score=31.79 Aligned_cols=66 Identities=8% Similarity=0.103 Sum_probs=38.0
Q ss_pred CHHHHHHHHHHHHhcCCCCCCeEEcCCC---C-CcCChHHHHHHhccchhhhhhhcCCCCccccCccccCCccc
Q 029469 109 GPEFIEKYKSYLANFGYDPNKIKDTPQD---C-EVISNSQLAAMMSMSGMQQALTNQFPDLELKSPLALNPFTS 178 (193)
Q Consensus 109 s~e~~~~~~~~l~~~G~d~~~l~~t~Q~---C-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (193)
+-+.+.+..+.+.+.|+.-=-|.-++.. + ....+.+ + .+ +---.++.+.||||.+-..|.++||||
T Consensus 59 sid~l~~~~~~~~~~Gi~~v~lFgv~~~Kd~~gs~A~~~~-g-~v--~~air~iK~~~pdl~vi~DVcLc~YT~ 128 (322)
T PRK13384 59 PESALADEIERLYALGIRYVMPFGISHHKDAKGSDTWDDN-G-LL--ARMVRTIKAAVPEMMVIPDICFCEYTD 128 (322)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCcccccCCC-C-hH--HHHHHHHHHHCCCeEEEeeeecccCCC
Confidence 3445555666666778764333333321 1 1111111 0 00 122346889999999999999999997
No 45
>PF04498 Pox_VP8_L4R: Poxvirus nucleic acid binding protein VP8/L4R; InterPro: IPR007586 The 25 kDa product of Vaccinia virus gene L4R is also known as VP8. VP8 is found in the cores of Vaccinia virions and is essential for the formation of transcriptionally competent viral particles. It binds both single stranded and double stranded DNA and RNA with similar affinities. Binding is thought to involve cooperative interactions between protein subunits. The protein is proteolytically cleaved during viral assembly at an Ala-Gly-Ala site. Possible roles for VP8 include packaging and maintaining the DNA genome in a transcribable configuration; binding ssDNA during transcription initiation; and cooperation with I8R protein to unwind early promoter regions. VP8 may also function in either transcription elongation or release of mRNA molecules from viral particles [].; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=26.66 E-value=17 Score=30.94 Aligned_cols=26 Identities=35% Similarity=0.608 Sum_probs=22.7
Q ss_pred CccccCccccCCccchHHHHHHHHHh
Q 029469 164 DLELKSPLALNPFTSVLDTLKKLLEL 189 (193)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (193)
+-.|..||.+|-|+-+||++||=+.|
T Consensus 188 ~~~lqepirL~dF~~lF~~vKK~i~L 213 (218)
T PF04498_consen 188 STPLQEPIRLNDFIELFDCVKKNIPL 213 (218)
T ss_pred cCCcCCceeHHHHHHHHHHHhhcCcc
Confidence 55689999999999999999996654
No 46
>TIGR02384 RelB_DinJ addiction module antitoxin, RelB/DinJ family. Plasmids may be maintained stably in bacterial populations through the action of addiction modules, in which a toxin and antidote are encoded in a cassette on the plasmid. In any daughter cell that lacks the plasmid, the toxin persists and is lethal after the antidote protein is depleted. Toxin/antitoxin pairs are also found on main chromosomes, and likely represent selfish DNA. Sequences in the seed for this alignment all were found adjacent to toxin genes. The resulting model appears to describe a narrower set of proteins than Pfam model pfam04221, although many in the scope of this model are not obviously paired with toxin proteins. Several toxin/antitoxin pairs may occur in a single species.
Probab=24.57 E-value=57 Score=23.53 Aligned_cols=25 Identities=12% Similarity=0.210 Sum_probs=21.3
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCCeE
Q 029469 107 TPGPEFIEKYKSYLANFGYDPNKIK 131 (193)
Q Consensus 107 ~ls~e~~~~~~~~l~~~G~d~~~l~ 131 (193)
.++++.++++.++++++|++++..+
T Consensus 8 Rvd~~lK~~a~~i~~~lGl~~s~ai 32 (83)
T TIGR02384 8 RIDEELKKEAYAVFEELGLTPSTAI 32 (83)
T ss_pred eeCHHHHHHHHHHHHHhCCCHHHHH
Confidence 4788999999999999999987643
No 47
>PRK11235 bifunctional antitoxin/transcriptional repressor RelB; Provisional
Probab=24.37 E-value=53 Score=23.82 Aligned_cols=25 Identities=16% Similarity=0.247 Sum_probs=21.4
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCCeE
Q 029469 107 TPGPEFIEKYKSYLANFGYDPNKIK 131 (193)
Q Consensus 107 ~ls~e~~~~~~~~l~~~G~d~~~l~ 131 (193)
.++++.++.+.++++++|++++..+
T Consensus 7 RiD~~lK~~A~~vl~~lGls~S~Ai 31 (80)
T PRK11235 7 RVDDELKARAYAVLEKLGVTPSEAL 31 (80)
T ss_pred EeCHHHHHHHHHHHHHhCCCHHHHH
Confidence 3788999999999999999988643
No 48
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=24.31 E-value=95 Score=29.62 Aligned_cols=35 Identities=23% Similarity=0.337 Sum_probs=25.1
Q ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEcCC
Q 029469 97 SFIQIYSRTPTPGPEFIEKYKSYLANFGYDPNKIKDTPQ 135 (193)
Q Consensus 97 ~~lWILSRtp~ls~e~~~~~~~~l~~~G~d~~~l~~t~Q 135 (193)
..+||+. .+.. ..+.+.+.++++|++++++++.+.
T Consensus 315 S~L~L~~-~~~~---~~~~l~~~~~~~Gv~~~Ri~f~~~ 349 (468)
T PF13844_consen 315 SRLWLLR-FPAS---GEARLRRRFAAHGVDPDRIIFSPV 349 (468)
T ss_dssp EEEEEEE-TSTT---HHHHHHHHHHHTTS-GGGEEEEE-
T ss_pred cEEEEee-CCHH---HHHHHHHHHHHcCCChhhEEEcCC
Confidence 6789985 3332 346788889999999999988654
No 49
>COG0113 HemB Delta-aminolevulinic acid dehydratase [Coenzyme metabolism]
Probab=24.24 E-value=33 Score=31.16 Aligned_cols=24 Identities=25% Similarity=0.528 Sum_probs=21.8
Q ss_pred hhhhhcCCCCccccCccccCCccc
Q 029469 155 QQALTNQFPDLELKSPLALNPFTS 178 (193)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~ 178 (193)
-.++.+.||+|.+-..|.++||||
T Consensus 107 vr~ik~~~p~l~iitDvcLceyT~ 130 (330)
T COG0113 107 VRAIKEAFPELVVITDVCLCEYTD 130 (330)
T ss_pred HHHHHHhCCCeEEEeeecccCCcC
Confidence 347889999999999999999997
No 50
>PF02484 Rhabdo_NV: Rhabdovirus Non-virion protein; InterPro: IPR003490 Infectious hematopoietic necrosis virus (IHNV) is a member of the family Rhabdoviridae. The non-virion protein (NV) is coded for by one of the six genes of the IHNV genome [], but is absent in vesiculovirus-like rhabdovirus [].
Probab=23.03 E-value=99 Score=23.37 Aligned_cols=63 Identities=29% Similarity=0.426 Sum_probs=38.0
Q ss_pred CCCCCCHHHHHHHHHH---HHhcC--CCCCCeEEcCCCCCcCChH---HHHHHhccchhhhhhhcCCCCccccCc
Q 029469 104 RTPTPGPEFIEKYKSY---LANFG--YDPNKIKDTPQDCEVISNS---QLAAMMSMSGMQQALTNQFPDLELKSP 170 (193)
Q Consensus 104 Rtp~ls~e~~~~~~~~---l~~~G--~d~~~l~~t~Q~C~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (193)
|+|+.+-+.+..++.+ ...+| ||..++++...+ ...+.. -+.|..|.-.||++| |-|+.+.+.
T Consensus 4 ~~~~t~~~al~~~lryk~~va~hgflfddg~~vw~e~~-d~~w~rl~~vv~al~ss~rm~~~l---~md~sitkg 74 (111)
T PF02484_consen 4 RDPNTNMEALRDALRYKNEVARHGFLFDDGDIVWSEDD-DETWNRLCDVVNALISSNRMQQVL---FMDMSITKG 74 (111)
T ss_pred CCCCccHHHHHHHHHHHhhccccceEecCCcEEEecCC-hHHHHHHHHHHHHHHhhHHHHhhh---heeeeEecC
Confidence 5666665555444433 23456 567788888663 111222 278999999999998 445555443
No 51
>COG3077 RelB DNA-damage-inducible protein J [DNA replication, recombination, and repair]
Probab=22.96 E-value=55 Score=24.30 Aligned_cols=25 Identities=16% Similarity=0.134 Sum_probs=22.0
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCCeE
Q 029469 107 TPGPEFIEKYKSYLANFGYDPNKIK 131 (193)
Q Consensus 107 ~ls~e~~~~~~~~l~~~G~d~~~l~ 131 (193)
.+++++++++.+++++.|++++..+
T Consensus 10 RiD~~vK~eA~~Vl~~mGlt~S~ai 34 (88)
T COG3077 10 RIDDEVKEEATAVLEEMGLTISDAI 34 (88)
T ss_pred eecHHHHHHHHHHHHHhCCCHHHHH
Confidence 4789999999999999999988744
No 52
>PF04221 RelB: RelB antitoxin; InterPro: IPR007337 Plasmids may be maintained stably in bacterial populations through the action of addiction modules, in which a toxin and antidote are encoded in a cassette on the plasmid. In any daughter cell that lacks the plasmid, the toxin persists and is lethal after the antidote protein is depleted. Toxin/antitoxin pairs are also found on main chromosomes, and likely represent selfish DNA. Sequences in the seed for this alignment all were found adjacent to toxin genes. Several toxin/antitoxin pairs may occur in a single species. RelE and RelB form a toxin-antitoxin system; RelE represses translation, probably through binding ribosomes [, ]. RelB stably binds RelE, presumably deactivating it.; PDB: 2KC8_B 2K29_A.
Probab=22.20 E-value=42 Score=23.94 Aligned_cols=23 Identities=17% Similarity=0.241 Sum_probs=17.0
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCe
Q 029469 108 PGPEFIEKYKSYLANFGYDPNKI 130 (193)
Q Consensus 108 ls~e~~~~~~~~l~~~G~d~~~l 130 (193)
++++.++++.++++++|++++..
T Consensus 8 id~~lK~~a~~il~~~Glt~s~a 30 (83)
T PF04221_consen 8 IDEELKEEAEAILEELGLTLSDA 30 (83)
T ss_dssp E-HHHHHHHHHHHHHTT--HHHH
T ss_pred cCHHHHHHHHHHHHHcCCCHHHH
Confidence 67889999999999999987643
No 53
>PHA01748 hypothetical protein
Probab=21.15 E-value=43 Score=22.70 Aligned_cols=25 Identities=12% Similarity=0.256 Sum_probs=20.8
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCCeE
Q 029469 107 TPGPEFIEKYKSYLANFGYDPNKIK 131 (193)
Q Consensus 107 ~ls~e~~~~~~~~l~~~G~d~~~l~ 131 (193)
.++++.++++.+++++.|++.+.++
T Consensus 8 rLp~el~~eld~~a~~~g~~RSE~I 32 (60)
T PHA01748 8 KIEEDLLELLDRYAIKHGLNRSEAI 32 (60)
T ss_pred ECCHHHHHHHHHHHHHhCCCHHHHH
Confidence 4789999999999999998766543
No 54
>KOG3037 consensus Cell membrane glycoprotein [General function prediction only]
Probab=21.12 E-value=3.9e+02 Score=24.46 Aligned_cols=72 Identities=18% Similarity=0.187 Sum_probs=43.8
Q ss_pred CEEEEEeecC-ceEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEcCC--CCCcCChHHHHHHhccchhhhhh
Q 029469 86 NFALVSGAKD-KSFIQIYSRTPTPGPEFIEKYKSYLANFGYDPNKIKDTPQ--DCEVISNSQLAAMMSMSGMQQAL 158 (193)
Q Consensus 86 nYAiV~~c~~-~~~lWILSRtp~ls~e~~~~~~~~l~~~G~d~~~l~~t~Q--~C~~~~~~~~~~~~~~~~~~~~~ 158 (193)
-|++.|...+ +.+.|+---+..-+++.-+++.+++..--- ......--. .-..++.+++..++.-.||+++|
T Consensus 84 VY~LKFkSs~~r~FFWMQE~~~d~D~e~c~rvNelln~p~~-~~~~~~~~~~~~l~~~~~s~~~~lfgg~~~~~~L 158 (330)
T KOG3037|consen 84 VYVLKFKSSDQRLFFWMQEPSDDNDKELCSRVNELLNKPPT-SRPLGASGSGSMLNDDSKSQLMQLFGGSGMNDGL 158 (330)
T ss_pred EEEEEecCCCeeEEEEeecCCCCcCHHHHHHHHHHHcCCCc-cccccccccccccccccHHHHHhhcCcccccchh
Confidence 3556554444 577899988888888999999998875311 111111111 23456778888888744444433
No 55
>COG4509 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.99 E-value=1.3e+02 Score=26.16 Aligned_cols=73 Identities=12% Similarity=0.148 Sum_probs=47.8
Q ss_pred CEEEEEEcCCCEEE-EEeecCceEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEcCC-------CCCcCChHHHHH
Q 029469 76 PYDVIATDYDNFAL-VSGAKDKSFIQIYSRTPTPGPEFIEKYKSYLANFGYDPNKIKDTPQ-------DCEVISNSQLAA 147 (193)
Q Consensus 76 dY~Vl~TDYdnYAi-V~~c~~~~~lWILSRtp~ls~e~~~~~~~~l~~~G~d~~~l~~t~Q-------~C~~~~~~~~~~ 147 (193)
+-.=.++-|.+|-+ |++|-...--.-|-|++-+.+.-++++++-.++.-+--+++..+.. .|..+.+..-+.
T Consensus 155 k~fsyetk~~~y~veiFaay~Ttt~d~yi~tef~~d~dy~~fLne~KqkSV~~snV~vt~edriitLSTCed~~d~t~gR 234 (244)
T COG4509 155 KEFSYETKYKQYKVEIFAAYQTTTDDYYIETEFPVDIDYNEFLNEIKQKSVQQSNVLVTNEDRIITLSTCEDMTDETDGR 234 (244)
T ss_pred CceEeecccceEEEEEEEEEEecccceeeecCCCCchhHHHHHHHHHhhheeecceeecccceEEEeecccccccccCce
Confidence 44456888889977 6777533222223456666666688888888887776666666644 399887665444
Q ss_pred H
Q 029469 148 M 148 (193)
Q Consensus 148 ~ 148 (193)
|
T Consensus 235 i 235 (244)
T COG4509 235 I 235 (244)
T ss_pred E
Confidence 4
No 56
>cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. The eukaryotic PBGSs represented by this model, which contain a cysteine-rich zinc binding motif (DXCXCX(Y/F)X3G(H/Q)CG), require zinc for their activity, they
Probab=20.32 E-value=44 Score=30.39 Aligned_cols=64 Identities=17% Similarity=0.265 Sum_probs=38.6
Q ss_pred CHHHHHHHHHHHHhcCCCCCCeEEcCC-CCCc--------CChHHHHHHhccchhhhhhhcCCCCccccCccccCCccc
Q 029469 109 GPEFIEKYKSYLANFGYDPNKIKDTPQ-DCEV--------ISNSQLAAMMSMSGMQQALTNQFPDLELKSPLALNPFTS 178 (193)
Q Consensus 109 s~e~~~~~~~~l~~~G~d~~~l~~t~Q-~C~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (193)
+-+.+.+..+.+.++|+.-=-|.-++. .+.. .+++=+.. .-.++...||||.+-..|.++||||
T Consensus 49 s~d~l~~~~~~~~~~Gi~~v~LFgv~~~~~Kd~~~gs~a~~~~g~v~~------air~iK~~~pdl~vi~Dvclc~YT~ 121 (320)
T cd04824 49 GVNRLEEFLRPLVAKGLRSVILFGVPLKPGKDDRSGSAADDEDGPVIQ------AIKLIREEFPELLIACDVCLCEYTS 121 (320)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCccccCCcCccccccCCCChHHH------HHHHHHHhCCCcEEEEeeeccCCCC
Confidence 344555566666777877444433332 1111 11111222 2346889999999999999999997
No 57
>PRK12454 carbamate kinase-like carbamoyl phosphate synthetase; Reviewed
Probab=20.08 E-value=42 Score=30.33 Aligned_cols=31 Identities=23% Similarity=0.379 Sum_probs=27.0
Q ss_pred CCcCChHHHHHHhccchhhhhhhcCCCCccccCccc
Q 029469 137 CEVISNSQLAAMMSMSGMQQALTNQFPDLELKSPLA 172 (193)
Q Consensus 137 C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (193)
|..++..-+++|| |++|.|.++..++.++|.
T Consensus 80 ~~a~sqG~igy~l-----~~al~~~l~~~g~~~~v~ 110 (313)
T PRK12454 80 AGAMTQGWIGYMI-----QQALRNELAKRGIEKQVA 110 (313)
T ss_pred hhhhhhHHHHHHH-----HHHHHHHHHhcCCCCceE
Confidence 8888888899987 699999999999888764
Done!