BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029470
(193 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FJW4|NDUS4_ARATH NADH dehydrogenase [ubiquinone] iron-sulfur protein 4,
mitochondrial OS=Arabidopsis thaliana GN=FRO1 PE=2 SV=1
Length = 154
Score = 197 bits (501), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 103/181 (56%), Positives = 122/181 (67%), Gaps = 42/181 (23%)
Query: 13 RTVR--GTVCPFSRAFSADALVE--VKPGEIGMVSGIPEEHLRRRVVIYTPARTATQQGS 68
RT+R T+ +R F+ DA+VE K GEIG VSGIPEEHL R+V+IY+PARTATQ GS
Sbjct: 9 RTIRIAATLRRVARPFATDAVVESDYKRGEIGKVSGIPEEHLSRKVIIYSPARTATQSGS 68
Query: 69 GKLGRWKINFMSTQKWENPLMGWTSTGDPYANVGDAGLSFDSKEAAREFAERHGWEYVAA 128
GKLG+WKINF+ST KWENPLMGWTSTGDPYANVGD+ L+FDS+EAA+ FAERHGW+Y
Sbjct: 69 GKLGKWKINFVSTLKWENPLMGWTSTGDPYANVGDSALAFDSEEAAKSFAERHGWDY--- 125
Query: 129 GDIFRTFCAITISHTTTPLTPHPKKEKRKKEMYETLVRKPHRPLLKVKSYADNFKWKGPP 188
V+KP+ PLLKVKSY+DNFKWKG P
Sbjct: 126 -----------------------------------KVKKPNTPLLKVKSYSDNFKWKGNP 150
Query: 189 K 189
+
Sbjct: 151 Q 151
>sp|Q5XIF3|NDUS4_RAT NADH dehydrogenase [ubiquinone] iron-sulfur protein 4,
mitochondrial OS=Rattus norvegicus GN=Ndufs4 PE=1 SV=1
Length = 175
Score = 94.7 bits (234), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 67/108 (62%), Gaps = 9/108 (8%)
Query: 23 SRAFSADALVEVKPGEIGMVSGIPEEHLR-RRVVIYTPARTATQQGSGKLGRWKINFMST 81
++ + D ++V P ++G+PEEH++ R+V I+ PAR Q G +WK+ F +
Sbjct: 50 TQLITVDEKLDVTP-----LTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTR 104
Query: 82 QKWENPLMGWTSTGDPYANVGDAGLSFDSKEAAREFAERHGWEYVAAG 129
++WENPLMGW ST DP +N+ L+F +KE A FAE+HGW Y G
Sbjct: 105 ERWENPLMGWASTADPLSNM---VLTFSAKEDAVAFAEKHGWSYDVEG 149
>sp|O43181|NDUS4_HUMAN NADH dehydrogenase [ubiquinone] iron-sulfur protein 4,
mitochondrial OS=Homo sapiens GN=NDUFS4 PE=1 SV=1
Length = 175
Score = 93.2 bits (230), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 41/89 (46%), Positives = 60/89 (67%), Gaps = 4/89 (4%)
Query: 38 EIGMVSGIPEEHLR-RRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGD 96
+I ++G+PEEH++ R+V I+ PAR Q G +WK+ F + ++WENPLMGW ST D
Sbjct: 60 DITTLTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTAD 119
Query: 97 PYANVGDAGLSFDSKEAAREFAERHGWEY 125
P +N+ L+F +KE A FAE++GW Y
Sbjct: 120 PLSNM---VLTFSTKEDAVSFAEKNGWSY 145
>sp|Q0MQH0|NDUS4_GORGO NADH dehydrogenase [ubiquinone] iron-sulfur protein 4,
mitochondrial OS=Gorilla gorilla gorilla GN=NDUFS4 PE=2
SV=1
Length = 175
Score = 93.2 bits (230), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 41/89 (46%), Positives = 60/89 (67%), Gaps = 4/89 (4%)
Query: 38 EIGMVSGIPEEHLR-RRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGD 96
+I ++G+PEEH++ R+V I+ PAR Q G +WK+ F + ++WENPLMGW ST D
Sbjct: 60 DITTLTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTAD 119
Query: 97 PYANVGDAGLSFDSKEAAREFAERHGWEY 125
P +N+ L+F +KE A FAE++GW Y
Sbjct: 120 PLSNM---VLTFSTKEDAVSFAEKNGWSY 145
>sp|Q9CXZ1|NDUS4_MOUSE NADH dehydrogenase [ubiquinone] iron-sulfur protein 4,
mitochondrial OS=Mus musculus GN=Ndufs4 PE=1 SV=3
Length = 175
Score = 92.4 bits (228), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 41/89 (46%), Positives = 60/89 (67%), Gaps = 4/89 (4%)
Query: 38 EIGMVSGIPEEHLR-RRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGD 96
+I ++G+PEEH++ R+V I+ PAR Q G +WK+ F + ++WENPLMGW ST D
Sbjct: 60 DITTLTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTAD 119
Query: 97 PYANVGDAGLSFDSKEAAREFAERHGWEY 125
P +N+ L+F +KE A FAE++GW Y
Sbjct: 120 PLSNM---VLTFSAKEDAIAFAEKNGWSY 145
>sp|P0CB96|NDUS4_PONPY NADH dehydrogenase [ubiquinone] iron-sulfur protein 4,
mitochondrial OS=Pongo pygmaeus GN=NDUFS4 PE=2 SV=1
Length = 175
Score = 92.4 bits (228), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 41/89 (46%), Positives = 60/89 (67%), Gaps = 4/89 (4%)
Query: 38 EIGMVSGIPEEHLR-RRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGD 96
+I ++G+PEEH++ R+V I+ PAR Q G +WK+ F + ++WENPLMGW ST D
Sbjct: 60 DITTLTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTAD 119
Query: 97 PYANVGDAGLSFDSKEAAREFAERHGWEY 125
P +N+ L+F +KE A FAE++GW Y
Sbjct: 120 PLSNM---VLTFRTKEDAVSFAEKNGWSY 145
>sp|P0CB95|NDUS4_PONAB NADH dehydrogenase [ubiquinone] iron-sulfur protein 4,
mitochondrial OS=Pongo abelii GN=NDUFS4 PE=2 SV=1
Length = 175
Score = 92.4 bits (228), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 41/89 (46%), Positives = 60/89 (67%), Gaps = 4/89 (4%)
Query: 38 EIGMVSGIPEEHLR-RRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGD 96
+I ++G+PEEH++ R+V I+ PAR Q G +WK+ F + ++WENPLMGW ST D
Sbjct: 60 DITTLTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTAD 119
Query: 97 PYANVGDAGLSFDSKEAAREFAERHGWEY 125
P +N+ L+F +KE A FAE++GW Y
Sbjct: 120 PLSNM---VLTFRTKEDAVSFAEKNGWSY 145
>sp|Q66XS7|NDUS4_GECJA NADH dehydrogenase [ubiquinone] iron-sulfur protein 4,
mitochondrial OS=Gecko japonicus GN=NDUFS4 PE=2 SV=1
Length = 175
Score = 92.0 bits (227), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 40/89 (44%), Positives = 61/89 (68%), Gaps = 4/89 (4%)
Query: 38 EIGMVSGIPEEHLR-RRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGD 96
+I ++G+PEEH++ R+V I+ PAR Q G +WK+ F + ++WENPLMGW+ST D
Sbjct: 60 DITTLTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWSSTAD 119
Query: 97 PYANVGDAGLSFDSKEAAREFAERHGWEY 125
P +N+ L+F +KE A FAE++GW +
Sbjct: 120 PLSNL---VLTFSTKEDAVAFAEKNGWSF 145
>sp|Q02375|NDUS4_BOVIN NADH dehydrogenase [ubiquinone] iron-sulfur protein 4,
mitochondrial OS=Bos taurus GN=NDUFS4 PE=1 SV=1
Length = 175
Score = 92.0 bits (227), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 40/89 (44%), Positives = 59/89 (66%), Gaps = 4/89 (4%)
Query: 38 EIGMVSGIPEEHLR-RRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGD 96
+I ++G+PEEH++ R+ I+ PAR Q G +WK+ F + ++WENPLMGW ST D
Sbjct: 60 DITTITGVPEEHIKTRKARIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTAD 119
Query: 97 PYANVGDAGLSFDSKEAAREFAERHGWEY 125
P +N+ L+F +KE A FAE++GW Y
Sbjct: 120 PLSNL---VLTFSTKEDAVAFAEKNGWSY 145
>sp|Q0MQH1|NDUS4_PANTR NADH dehydrogenase [ubiquinone] iron-sulfur protein 4,
mitochondrial OS=Pan troglodytes GN=NDUFS4 PE=2 SV=1
Length = 175
Score = 89.7 bits (221), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 40/89 (44%), Positives = 59/89 (66%), Gaps = 4/89 (4%)
Query: 38 EIGMVSGIPEEHLR-RRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGD 96
+I ++G+PEEH++ R+V I+ PAR Q G +WK+ F + ++WENPLMGW ST D
Sbjct: 60 DITTLTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTAD 119
Query: 97 PYANVGDAGLSFDSKEAAREFAERHGWEY 125
P +N+ L+ +KE A FAE++GW Y
Sbjct: 120 PLSNM---VLTXSTKEDAVSFAEKNGWSY 145
>sp|P25711|NDUS4_NEUCR NADH-ubiquinone oxidoreductase 21 kDa subunit, mitochondrial
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=nuo-21 PE=1 SV=2
Length = 218
Score = 64.3 bits (155), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 56/100 (56%), Gaps = 7/100 (7%)
Query: 40 GMVSGIPEEHLRRRVVIYTPARTATQQGSGKLGRWKINFMSTQK---WENPLMGWTSTGD 96
+VSG P E R V IY P++ ATQ + ++ W++++ +K WEN LMGW S+GD
Sbjct: 102 AVVSGAPMELQARTVRIYLPSKPATQSSNSRV-LWRMDWDVLEKGHRWENELMGWQSSGD 160
Query: 97 PYANVGDAGLSFDSKEAAREFAERHGWEYVAAGDIFRTFC 136
V L+F +KE A +FAE+ G+EY R F
Sbjct: 161 ---FVQGTHLTFRTKEEAIQFAEKQGYEYFVQEPNQRHFT 197
>sp|P80268|NUO2_SOLTU NADH-ubiquinone oxidoreductase 18 kDa subunit (Fragment)
OS=Solanum tuberosum PE=1 SV=2
Length = 30
Score = 55.5 bits (132), Expect = 2e-07, Method: Composition-based stats.
Identities = 24/30 (80%), Positives = 29/30 (96%)
Query: 27 SADALVEVKPGEIGMVSGIPEEHLRRRVVI 56
+++ALVE+KPGEIGMVSGIP+EHLRR VVI
Sbjct: 1 ASEALVEIKPGEIGMVSGIPDEHLRRFVVI 30
>sp|Q8T1V6|NDUS4_DICDI NADH dehydrogenase [ubiquinone] iron-sulfur protein 4,
mitochondrial OS=Dictyostelium discoideum GN=ndufs4 PE=3
SV=2
Length = 190
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
Query: 52 RRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGDPYANVGDAGLSFDSK 111
+ V IY P+R Q G+ + +W I KW + LMGW ++ D + L F+S+
Sbjct: 84 KSVNIYRPSRNTMQTGTLRTKKWVIELPFNPKWNDRLMGWWASKDT---LNQLNLRFNSE 140
Query: 112 EAAREFAERHGWEY 125
A + + G Y
Sbjct: 141 TDAVAYCKEIGLNY 154
>sp|P05378|TRPE_THET8 Anthranilate synthase component 1 OS=Thermus thermophilus (strain
HB8 / ATCC 27634 / DSM 579) GN=trpE PE=3 SV=1
Length = 462
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 4/42 (9%)
Query: 110 SKEAAREFAERHGWEYVAAGDIFRTFCAITISHTTTPLTPHP 151
S+EA E A R +Y+ AGDIF+ ++ +S +PLT HP
Sbjct: 193 SREAYLE-AVRRALDYIRAGDIFQVVLSLRLS---SPLTVHP 230
>sp|B8FUN2|PRMA_DESHD Ribosomal protein L11 methyltransferase OS=Desulfitobacterium
hafniense (strain DCB-2 / DSM 10664) GN=prmA PE=3 SV=1
Length = 312
Score = 32.0 bits (71), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/81 (22%), Positives = 34/81 (41%)
Query: 89 MGWTSTGDPYANVGDAGLSFDSKEAAREFAERHGWEYVAAGDIFRTFCAITISHTTTPLT 148
+G + D + +G G+S + E + + E W+Y G+I T ++ +
Sbjct: 13 VGEEAVADLFYQLGCPGVSVEDPELLQSYVESGNWDYHDFGEIALTGTSVVKGYICEDHE 72
Query: 149 PHPKKEKRKKEMYETLVRKPH 169
PK + + + E L R P
Sbjct: 73 LQPKLRQLDEGLKELLQRFPE 93
>sp|Q9UFW8|CGBP1_HUMAN CGG triplet repeat-binding protein 1 OS=Homo sapiens GN=CGGBP1 PE=1
SV=2
Length = 167
Score = 31.6 bits (70), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 36/86 (41%), Gaps = 7/86 (8%)
Query: 91 WTSTGDPYANVGDAGLSFDSKEAAREFAERHGWEYVAAGDIFRTFCAITISHT-TTPLTP 149
+ T P N L + EF G + G +F T C + ++H + ++
Sbjct: 4 FVVTAPPARNRSKTALYVTPLDRVTEFG---GELHEDGGKLFCTSCNVVLNHVRKSAISD 60
Query: 150 HPKKE---KRKKEMYETLVRKPHRPL 172
H K + KRK E E VRK RPL
Sbjct: 61 HLKSKTHTKRKAEFEEQNVRKKQRPL 86
>sp|Q8BHG9|CGBP1_MOUSE CGG triplet repeat-binding protein 1 OS=Mus musculus GN=Cggbp1 PE=2
SV=1
Length = 167
Score = 31.6 bits (70), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 36/86 (41%), Gaps = 7/86 (8%)
Query: 91 WTSTGDPYANVGDAGLSFDSKEAAREFAERHGWEYVAAGDIFRTFCAITISHT-TTPLTP 149
+ T P N L + EF G + G +F T C + ++H + ++
Sbjct: 4 FVVTAPPARNRSKTALYVTPLDRVTEFG---GELHEDGGKLFCTSCNVVLNHVRKSAISD 60
Query: 150 HPKKE---KRKKEMYETLVRKPHRPL 172
H K + KRK E E VRK RPL
Sbjct: 61 HLKSKTHTKRKAEFEEQNVRKKQRPL 86
>sp|Q24SS5|PRMA_DESHY Ribosomal protein L11 methyltransferase OS=Desulfitobacterium
hafniense (strain Y51) GN=prmA PE=3 SV=1
Length = 312
Score = 31.6 bits (70), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/80 (22%), Positives = 33/80 (41%)
Query: 90 GWTSTGDPYANVGDAGLSFDSKEAAREFAERHGWEYVAAGDIFRTFCAITISHTTTPLTP 149
G + D + +G G+S + E + + E W+Y G+I T ++ +
Sbjct: 14 GEEAVADLFYQLGCPGVSVEDPELLQSYVESGNWDYHDFGEIALTGTSVVKGYICEDHEL 73
Query: 150 HPKKEKRKKEMYETLVRKPH 169
PK + + + E L R P
Sbjct: 74 QPKLRQLDEGLKELLQRFPE 93
>sp|Q3JAW7|HEMH_NITOC Ferrochelatase OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB
11848) GN=hemH PE=3 SV=1
Length = 368
Score = 30.8 bits (68), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 8/78 (10%)
Query: 60 ARTATQQGSGKLGRWKINFMST---QKWENP-----LMGWTSTGDPYANVGDAGLSFDSK 111
AR ++ K G W+I F S ++W P L W G +V G + D
Sbjct: 230 ARLLAERLGLKEGEWQIAFQSRFGREEWLKPYADHLLQAWAEAGIKRVDVVCPGFAVDCL 289
Query: 112 EAAREFAERHGWEYVAAG 129
E E A+R+ ++ AG
Sbjct: 290 ETLEEMAQRNRELFLHAG 307
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.133 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,374,556
Number of Sequences: 539616
Number of extensions: 3266201
Number of successful extensions: 6897
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 6852
Number of HSP's gapped (non-prelim): 31
length of query: 193
length of database: 191,569,459
effective HSP length: 111
effective length of query: 82
effective length of database: 131,672,083
effective search space: 10797110806
effective search space used: 10797110806
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)