Query 029470
Match_columns 193
No_of_seqs 168 out of 356
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 22:08:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029470.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029470hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lju_A Putative oxidoreductase 100.0 6.8E-50 2.3E-54 310.1 12.6 104 40-187 3-107 (108)
2 2jya_A AGR_C_3324P, uncharacte 100.0 5.7E-49 1.9E-53 304.2 8.1 95 52-187 4-99 (106)
3 3t5v_A Nuclear mRNA export pro 83.0 1 3.5E-05 39.4 4.0 59 105-166 233-299 (316)
4 4b0z_A RPN12, 26S proteasome r 82.4 0.67 2.3E-05 38.2 2.5 22 105-126 199-220 (229)
5 4b4t_T 26S proteasome regulato 73.0 1.4 4.8E-05 37.6 1.8 22 105-126 208-229 (274)
6 2hpu_A NOSL protein; alpha bet 66.1 4.8 0.00017 32.5 3.5 52 72-123 70-132 (175)
7 1ng7_A Poliovirus 3A-N, genome 58.4 4.4 0.00015 28.4 1.7 15 112-126 32-46 (60)
8 3ro8_A Endo-1,4-beta-xylanase; 52.6 13 0.00045 32.6 4.2 34 105-147 58-91 (341)
9 3u7b_A Endo-1,4-beta-xylanase; 46.5 16 0.00054 31.7 3.7 33 105-146 59-91 (327)
10 4f8x_A Endo-1,4-beta-xylanase; 43.0 16 0.00053 32.0 3.1 34 105-147 61-94 (335)
11 2kt5_A RNA and export factor-b 41.7 24 0.00081 24.9 3.4 41 105-151 80-121 (124)
12 2w5f_A Endo-1,4-beta-xylanase 40.9 22 0.00075 32.6 3.9 34 105-147 242-275 (540)
13 3niy_A Endo-1,4-beta-xylanase; 40.4 19 0.00065 31.5 3.2 33 105-146 78-110 (341)
14 1n82_A Xylanase, intra-cellula 40.3 17 0.00057 31.1 2.8 34 105-147 58-91 (331)
15 1nq6_A XYS1; glycoside hydrola 39.4 17 0.00057 30.4 2.6 34 105-147 57-90 (302)
16 3emz_A Xylanase, endo-1,4-beta 38.8 15 0.00051 32.0 2.3 34 105-147 57-90 (331)
17 3egn_A RNA-binding protein 40; 36.5 27 0.00093 25.2 3.1 46 105-157 96-142 (143)
18 3cui_A EXO-beta-1,4-glucanase; 35.7 21 0.00072 30.0 2.7 34 105-147 57-90 (315)
19 2fiu_A Conserved hypothetical 33.0 27 0.00091 25.2 2.5 15 105-119 58-72 (99)
20 3bsu_A Ribonuclease H1, RNAse 32.7 24 0.00083 23.3 2.1 16 105-120 35-50 (53)
21 1i1w_A Endo-1,4-beta-xylanase; 32.6 26 0.00088 29.6 2.7 33 105-146 60-92 (303)
22 1xyz_A 1,4-beta-D-xylan-xylano 32.2 28 0.00095 30.0 2.9 33 105-146 83-115 (347)
23 1v0l_A Endo-1,4-beta-xylanase 32.0 28 0.00097 29.7 2.9 33 105-146 58-90 (313)
24 1qhk_A RNAse HI, protein (ribo 31.4 19 0.00065 23.2 1.3 14 105-118 33-46 (47)
25 3jtn_A YPBH, adapter protein M 30.8 30 0.001 24.5 2.5 18 105-122 4-21 (91)
26 3jtp_A Adapter protein MECA 1; 30.5 25 0.00087 25.3 2.1 18 105-123 10-27 (98)
27 1ta3_B Endo-1,4-beta-xylanase; 30.2 32 0.0011 29.2 2.9 33 105-146 59-91 (303)
28 3p5t_L Cleavage and polyadenyl 29.1 25 0.00086 23.4 1.7 39 105-149 49-88 (90)
29 1r85_A Endo-1,4-beta-xylanase; 28.5 31 0.0011 30.5 2.6 22 105-126 72-93 (379)
30 2dep_A Xylanase B, thermostabl 27.8 35 0.0012 29.6 2.8 22 105-126 59-80 (356)
31 2uwf_A Endoxylanase, alkaline 26.7 31 0.0011 30.1 2.3 22 105-126 62-83 (356)
32 1ur1_A Endoxylanase; hydrolase 26.5 40 0.0014 29.7 3.0 34 105-147 81-114 (378)
33 4dgh_A Sulfate permease family 26.2 32 0.0011 24.6 2.0 15 107-121 111-125 (130)
34 3lo3_A Uncharacterized conserv 25.5 42 0.0014 23.8 2.5 15 105-119 57-71 (94)
35 3syx_A Sprouty-related, EVH1 d 24.7 38 0.0013 26.6 2.2 45 71-121 66-115 (130)
36 1qc6_A EVH1 domain from ENA/VA 24.4 43 0.0015 25.3 2.4 18 105-122 89-106 (130)
37 2d1z_A Endo-1,4-beta-D-xylanas 23.5 47 0.0016 29.1 2.9 22 105-126 58-79 (436)
38 2hw0_A Replicase; alpha+beta, 22.5 38 0.0013 25.6 1.8 16 108-123 86-101 (115)
39 2ebb_A Pterin-4-alpha-carbinol 22.3 48 0.0016 24.2 2.3 33 86-122 13-46 (101)
40 2j6v_A UV endonuclease, UVDE; 22.3 27 0.00093 29.6 1.0 34 106-151 58-91 (301)
41 1xod_A Spred1; sprouty, EVH1, 21.8 51 0.0017 24.8 2.4 17 105-121 92-108 (118)
42 1usm_A DCOH, hepatocyte nuclea 21.7 50 0.0017 23.0 2.2 32 89-122 1-32 (80)
43 2kln_A Probable sulphate-trans 21.3 35 0.0012 24.4 1.3 16 106-121 109-124 (130)
44 4g2e_A Peroxiredoxin; redox pr 20.3 56 0.0019 23.9 2.3 26 105-130 69-94 (157)
No 1
>2lju_A Putative oxidoreductase; structural genomics, seattle structural GENO center for infectious disease, ssgcid; NMR {Ehrlichia chaffeensis}
Probab=100.00 E-value=6.8e-50 Score=310.14 Aligned_cols=104 Identities=35% Similarity=0.582 Sum_probs=96.8
Q ss_pred ccccCCccccccceEEEecCCCCCCCCCCCCCCCcEEEcCCC-CCCcCCCcCccCCCCccCCcCCceeeeCCHHHHHHHH
Q 029470 40 GMVSGIPEEHLRRRVVIYTPARTATQQGSGKLGRWKINFMST-QKWENPLMGWTSTGDPYANVGDAGLSFDSKEAAREFA 118 (193)
Q Consensus 40 ~~vSGiPee~~~RrVrIY~PaK~AmQSG~~~t~~W~LeFe~~-~rwenPLMGWTSS~DplsqV~~~~L~F~SkE~AIaYA 118 (193)
|.+.|.|+. ++||||+|+|+|||||++++++|+|||++. ++|+|||||||||+||++|| +|+|+|+|+||+||
T Consensus 3 ~~~~~~~~~---~~arIy~Pak~amQSG~~~t~~W~lefe~~~~r~~nPLMGWtsS~D~~~qv---~L~F~skE~AiayA 76 (108)
T 2lju_A 3 GSMQEQVSN---VRARIYKPAKSTMQSGHSKLKAWKLEFEPSCTQYTEPLMNWTGSHDTKQQV---CLSFTTRELAIAYA 76 (108)
T ss_dssp --CCCCCCC---CEEEEECCCCCCSSSSCCSCCCEEEEECCCSSCCCCCCCCCSSSCCCCCCS---CEEESSHHHHHHHH
T ss_pred cccCCCCCC---CEEEEeCCCCCccccCCCCCCceEEEEecCCCCccCCCccccCCCCccccc---eEecCCHHHHHHHH
Confidence 455667766 789999999999999999999999999996 59999999999999999998 99999999999999
Q ss_pred HHcCCeeEEcccccccceeeeccccCCCCCCCChhhhhhhhhcccccccCCCCCCCcccccccCCCCCC
Q 029470 119 ERHGWEYVAAGDIFRTFCAITISHTTTPLTPHPKKEKRKKEMYETLVRKPHRPLLKVKSYADNFKWKGP 187 (193)
Q Consensus 119 er~Gw~Y~V~~~~~~~~~~~~~sh~~~p~~~~~~~~~~~~~~~~~~v~~p~~~~~~~ksya~nf~~~~~ 187 (193)
|+|||+|+ |.+|+.+.+++|+|||||+|++.
T Consensus 77 ek~G~~y~--------------------------------------V~ep~~~~~r~ksYadNF~~~r~ 107 (108)
T 2lju_A 77 VAHKIDYT--------------------------------------VLQDNPRTIVPKSYADNFTKPRD 107 (108)
T ss_dssp HHTTCEEE--------------------------------------EECSSCCCCCCCCCCCCCCCCCC
T ss_pred HHcCCEEE--------------------------------------EecCCcccCCcCchHHHCCccCC
Confidence 99999999 99999999999999999999874
No 2
>2jya_A AGR_C_3324P, uncharacterized protein ATU1810; protein with unknown function ATU1810, ontario centre for ST proteomics, OCSP; NMR {Agrobacterium tumefaciens str}
Probab=100.00 E-value=5.7e-49 Score=304.24 Aligned_cols=95 Identities=38% Similarity=0.654 Sum_probs=77.1
Q ss_pred ceEEEecCCCCCCCCCCCCCCCcEEEcCCC-CCCcCCCcCccCCCCccCCcCCceeeeCCHHHHHHHHHHcCCeeEEccc
Q 029470 52 RRVVIYTPARTATQQGSGKLGRWKINFMST-QKWENPLMGWTSTGDPYANVGDAGLSFDSKEAAREFAERHGWEYVAAGD 130 (193)
Q Consensus 52 RrVrIY~PaK~AmQSG~~~t~~W~LeFe~~-~rwenPLMGWTSS~DplsqV~~~~L~F~SkE~AIaYAer~Gw~Y~V~~~ 130 (193)
++||||+|+|+|||||++++++|+|||++. ++|+|||||||||+||++|| +|+|+|+|+||+|||+|||+|+
T Consensus 4 m~arIy~Pak~amQSG~~~t~~W~lefe~~~~rw~nPLMGWtsS~D~~~qv---~L~F~skE~AiayAek~G~~y~---- 76 (106)
T 2jya_A 4 MSAKIYRPAKTAMQSGTAKTNVWVLEFDAEVPRKIDPIMGYTSSSDMKQQV---KLTFETQEQAEAYAQRKGIEYR---- 76 (106)
T ss_dssp CEEEEECCSSCCCTTTTCCSCCEEEEEEEECCSCCCTTTCSCSCCCSEEEE---EEEESSHHHHHHHHHHHTCEEE----
T ss_pred cEEEEeCCCCCccccCCCCCCceEEEEecCCCCccCCCcCcCCCCCccccc---eEecCCHHHHHHHHHHcCCEEE----
Confidence 689999999999999999999999999996 79999999999999999998 9999999999999999999999
Q ss_pred ccccceeeeccccCCCCCCCChhhhhhhhhcccccccCCCCCCCcccccccCCCCCC
Q 029470 131 IFRTFCAITISHTTTPLTPHPKKEKRKKEMYETLVRKPHRPLLKVKSYADNFKWKGP 187 (193)
Q Consensus 131 ~~~~~~~~~~sh~~~p~~~~~~~~~~~~~~~~~~v~~p~~~~~~~ksya~nf~~~~~ 187 (193)
|.+|+.+.+++|||||||+|+..
T Consensus 77 ----------------------------------V~ep~~~~~r~ksYadNF~~~r~ 99 (106)
T 2jya_A 77 ----------------------------------VILPKEATRKVVSYTDNFRFNRT 99 (106)
T ss_dssp ----------------------------------ECCCTTC----------------
T ss_pred ----------------------------------EeCCCcCcCCcCchHHhCCcCCC
Confidence 99999999999999999999864
No 3
>3t5v_A Nuclear mRNA export protein SAC3; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=83.02 E-value=1 Score=39.43 Aligned_cols=59 Identities=22% Similarity=0.248 Sum_probs=37.3
Q ss_pred eeeeCCHHHHHHHHHHcCCeeEEcccccccceee-eccccCCCCCCCChh-------hhhhhhhcccccc
Q 029470 105 GLSFDSKEAAREFAERHGWEYVAAGDIFRTFCAI-TISHTTTPLTPHPKK-------EKRKKEMYETLVR 166 (193)
Q Consensus 105 ~L~F~SkE~AIaYAer~Gw~Y~V~~~~~~~~~~~-~~sh~~~p~~~~~~~-------~~~~~~~~~~~v~ 166 (193)
.|.|+|.|+|++||+.+||.+. .++ +..|+. ..--.++++++.+|+ +|+++--|+..|.
T Consensus 233 ~L~Fds~ee~~~F~~~~gl~~~-~~~--~~~~~~~~~~~~~~~~~~p~~~~~~~~ve~K~~~~~~~~~i~ 299 (316)
T 3t5v_A 233 MLLFNNRQEIIEFCNYYSIEII-NGD--AADLKTLQHYSHKLSETQPLKKTYLTCLERRLQKTTYKGLIN 299 (316)
T ss_dssp HTTCSSHHHHHHHHHHTTCCEE-TTT--EECGGGCCCSSSSCTTSCCCCCCCCHHHHHHHHTSCHHHHHT
T ss_pred HhCCCCHHHHHHHHHHCCCeEe-CCC--CchHHhhcchhccccccCCCcchhHHHHHHHHcCCcHHHHHh
Confidence 4999999999999999999998 222 223322 111245677665543 3555555555443
No 4
>4b0z_A RPN12, 26S proteasome regulatory subunit RPN12; protein binding, proteasome ubitquitin; HET: SGM GOL; 1.58A {Schizosaccharomyces pombe}
Probab=82.35 E-value=0.67 Score=38.22 Aligned_cols=22 Identities=23% Similarity=0.555 Sum_probs=20.6
Q ss_pred eeeeCCHHHHHHHHHHcCCeeE
Q 029470 105 GLSFDSKEAAREFAERHGWEYV 126 (193)
Q Consensus 105 ~L~F~SkE~AIaYAer~Gw~Y~ 126 (193)
.|.|+|.++++.||+++||...
T Consensus 199 ~L~f~s~~e~~~f~~~~gw~i~ 220 (229)
T 4b0z_A 199 LLYLENTKETEKLAEERGWDIR 220 (229)
T ss_dssp HTTCSSHHHHHHHHHHHTCEEE
T ss_pred HhCCCCHHHHHHHHHHcCCEEe
Confidence 5999999999999999999886
No 5
>4b4t_T 26S proteasome regulatory subunit RPN12; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=73.00 E-value=1.4 Score=37.55 Aligned_cols=22 Identities=27% Similarity=0.545 Sum_probs=20.5
Q ss_pred eeeeCCHHHHHHHHHHcCCeeE
Q 029470 105 GLSFDSKEAAREFAERHGWEYV 126 (193)
Q Consensus 105 ~L~F~SkE~AIaYAer~Gw~Y~ 126 (193)
.|.|+|.+++++||+++||...
T Consensus 208 ~L~F~s~~e~~~F~~~~gW~~~ 229 (274)
T 4b4t_T 208 LLFFNNEKETEKFALERNWPIV 229 (274)
T ss_dssp HHTCCSHHHHHHHHHHTTCCCC
T ss_pred HhCCCCHHHHHHHHHHcCCEEe
Confidence 4899999999999999999876
No 6
>2hpu_A NOSL protein; alpha beta topology, metal transport; NMR {Achromobacter cycloclastes} SCOP: d.357.1.1 PDB: 2hq3_A
Probab=66.05 E-value=4.8 Score=32.50 Aligned_cols=52 Identities=19% Similarity=0.399 Sum_probs=33.1
Q ss_pred CCcEEEcCC-CCCCcCCCcC-cc--------CCCCccCCcC-CceeeeCCHHHHHHHHHHcCC
Q 029470 72 GRWKINFMS-TQKWENPLMG-WT--------STGDPYANVG-DAGLSFDSKEAAREFAERHGW 123 (193)
Q Consensus 72 ~~W~LeFe~-~~rwenPLMG-WT--------SS~DplsqV~-~~~L~F~SkE~AIaYAer~Gw 123 (193)
.-|+-+|.. ...|+.|--+ |. -.+|-..-++ ..-+-|.++++|.+|+++||=
T Consensus 70 aiyV~D~~t~~~~w~~p~~~~wIdA~~A~YVvgS~~~gpMG~~~l~pFa~k~dAe~Fa~~~GG 132 (175)
T 2hpu_A 70 VIYVNDMGAAGATWDQPGDGNWIAADKAFYVVGSARRGGMGAPEAVPFSSRDEAAAFVLAEGG 132 (175)
T ss_dssp EEEEEESCTTSSCTTCSCCCEEECGGGSEEEEESSSSCSSSCCCEEEESCHHHHHHHHHHTEE
T ss_pred EEEEEcCcccccccccCCCCceEECCeeEEEeCCCCCCCCCCCcccCcCCHHHHHHHHHHcCC
Confidence 558888887 3556655222 42 1233222222 236999999999999999984
No 7
>1ng7_A Poliovirus 3A-N, genome polyprotein [core protein P3A]; helical hairpin, unfolded domain, symmetric dimer, viral protein; NMR {Human poliovirus 1} SCOP: a.178.1.1
Probab=58.45 E-value=4.4 Score=28.37 Aligned_cols=15 Identities=27% Similarity=0.811 Sum_probs=12.9
Q ss_pred HHHHHHHHHcCCeeE
Q 029470 112 EAAREFAERHGWEYV 126 (193)
Q Consensus 112 E~AIaYAer~Gw~Y~ 126 (193)
|+-+.||+++||-.-
T Consensus 32 ~eV~~YC~~kGwIiP 46 (60)
T 1ng7_A 32 QEVRDYCEKKGWIVN 46 (60)
T ss_dssp HHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHCCceec
Confidence 678999999999753
No 8
>3ro8_A Endo-1,4-beta-xylanase; glycosyl hydrolase family 10, GH10, (beta/alpha)8 fold, XYLA hydrolase; 1.34A {Paenibacillus SP} PDB: 3rdk_A 4e4p_A
Probab=52.60 E-value=13 Score=32.56 Aligned_cols=34 Identities=15% Similarity=0.270 Sum_probs=29.7
Q ss_pred eeeeCCHHHHHHHHHHcCCeeEEcccccccceeeeccccCCCC
Q 029470 105 GLSFDSKEAAREFAERHGWEYVAAGDIFRTFCAITISHTTTPL 147 (193)
Q Consensus 105 ~L~F~SkE~AIaYAer~Gw~Y~V~~~~~~~~~~~~~sh~~~p~ 147 (193)
+..|...+..++||++||+... |-+.+-|+-+|.
T Consensus 58 ~~~f~~aD~~v~~a~~ngi~vr---------GHtLvWh~q~P~ 91 (341)
T 3ro8_A 58 NFTFTAADAMIDKVLAEGMKMH---------GHVLVWHQQSPA 91 (341)
T ss_dssp BCCCHHHHHHHHHHHHTTCEEE---------EEEEECSSSCCG
T ss_pred ccchHHHHHHHHHHHhCCCEEE---------eccccCcccCCH
Confidence 5889999999999999999998 777778888774
No 9
>3u7b_A Endo-1,4-beta-xylanase; TIM barrel, hydrolase; HET: NAG BMA MAN; 1.94A {Fusarium oxysporum}
Probab=46.47 E-value=16 Score=31.72 Aligned_cols=33 Identities=18% Similarity=0.423 Sum_probs=27.8
Q ss_pred eeeeCCHHHHHHHHHHcCCeeEEcccccccceeeeccccCCC
Q 029470 105 GLSFDSKEAAREFAERHGWEYVAAGDIFRTFCAITISHTTTP 146 (193)
Q Consensus 105 ~L~F~SkE~AIaYAer~Gw~Y~V~~~~~~~~~~~~~sh~~~p 146 (193)
+..|...++.|+||++||+... |-+.+-|+.+|
T Consensus 59 ~~~f~~~D~~v~~a~~~gi~vr---------GHtLvWh~q~P 91 (327)
T 3u7b_A 59 QFNWGPADQHAAAATSRGYELR---------CHTLVWHSQLP 91 (327)
T ss_dssp BCCCHHHHHHHHHHHTTTCEEE---------EEEEEESTTCC
T ss_pred ccChHHHHHHHHHHHHCCCEEE---------EeeeecCCcCc
Confidence 5789999999999999999987 55556688777
No 10
>4f8x_A Endo-1,4-beta-xylanase; TIM barrel, hydrolase; HET: NAG BMA; 1.47A {Penicillium canescens}
Probab=42.97 E-value=16 Score=32.04 Aligned_cols=34 Identities=24% Similarity=0.235 Sum_probs=29.3
Q ss_pred eeeeCCHHHHHHHHHHcCCeeEEcccccccceeeeccccCCCC
Q 029470 105 GLSFDSKEAAREFAERHGWEYVAAGDIFRTFCAITISHTTTPL 147 (193)
Q Consensus 105 ~L~F~SkE~AIaYAer~Gw~Y~V~~~~~~~~~~~~~sh~~~p~ 147 (193)
+..|...++.++||++||+... |-+.+-|+.+|.
T Consensus 61 ~~~f~~aD~~v~~a~~~gi~vr---------GHtLvWh~q~P~ 94 (335)
T 4f8x_A 61 VFNFTEGEQFLEVAERFGSKVR---------CHNLVWASQVSD 94 (335)
T ss_dssp EECCHHHHHHHHHHHHTTCEEE---------EEEEECSSSCCH
T ss_pred ccCcchhHHHHHHHHHCCCEEE---------EeeecccccCcH
Confidence 6889999999999999999988 666777887773
No 11
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=41.67 E-value=24 Score=24.91 Aligned_cols=41 Identities=15% Similarity=0.159 Sum_probs=26.9
Q ss_pred eeeeCCHHHHHHHHH-HcCCeeEEcccccccceeeeccccCCCCCCCC
Q 029470 105 GLSFDSKEAAREFAE-RHGWEYVAAGDIFRTFCAITISHTTTPLTPHP 151 (193)
Q Consensus 105 ~L~F~SkE~AIaYAe-r~Gw~Y~V~~~~~~~~~~~~~sh~~~p~~~~~ 151 (193)
-+.|.+.|+|..-.+ -+|..+. ++-..+.+++......|++
T Consensus 80 fV~f~~~~~A~~Ai~~l~g~~~~------g~~l~V~~a~~~~~~~~~~ 121 (124)
T 2kt5_A 80 DVHFERRADALKAMKQYKGVPLD------GRPMDIQLVASQIDLEHHH 121 (124)
T ss_dssp EEEESSHHHHHHHHHHHTTEESS------SCEEEEEEECCTTCCCCCC
T ss_pred EEEECCHHHHHHHHHHcCCCEEC------CcEEEEEEeCCCCCCCCCc
Confidence 689999999988777 5665433 3334566666655555544
No 12
>2w5f_A Endo-1,4-beta-xylanase Y; cellulosome, glycosidase, xylan degradation, hydrolase; HET: XYP; 1.90A {Clostridium thermocellum} PDB: 2wze_A* 2wys_A*
Probab=40.91 E-value=22 Score=32.61 Aligned_cols=34 Identities=15% Similarity=0.221 Sum_probs=28.0
Q ss_pred eeeeCCHHHHHHHHHHcCCeeEEcccccccceeeeccccCCCC
Q 029470 105 GLSFDSKEAAREFAERHGWEYVAAGDIFRTFCAITISHTTTPL 147 (193)
Q Consensus 105 ~L~F~SkE~AIaYAer~Gw~Y~V~~~~~~~~~~~~~sh~~~p~ 147 (193)
+..|...++.++||++||+... |-+.+-|+-+|.
T Consensus 242 ~~~f~~aD~~v~~A~~ngi~vr---------GHtLvWhsq~P~ 275 (540)
T 2w5f_A 242 RVSLNRAASILNFCAQNNIAVR---------GHTLVWHSQTPQ 275 (540)
T ss_dssp EECCTTTHHHHHHHHHTTCEEE---------EEEEECSSSCCG
T ss_pred eechhHHHHHHHHHHHCCCEEE---------EEEEEcCCCCch
Confidence 4789999999999999999987 555567776664
No 13
>3niy_A Endo-1,4-beta-xylanase; TIM-barrel, hydrolase; 1.58A {Thermotoga petrophila rku-1} SCOP: c.1.8.3 PDB: 3nj3_A* 1vbr_A* 1vbu_A
Probab=40.41 E-value=19 Score=31.47 Aligned_cols=33 Identities=24% Similarity=0.274 Sum_probs=28.3
Q ss_pred eeeeCCHHHHHHHHHHcCCeeEEcccccccceeeeccccCCC
Q 029470 105 GLSFDSKEAAREFAERHGWEYVAAGDIFRTFCAITISHTTTP 146 (193)
Q Consensus 105 ~L~F~SkE~AIaYAer~Gw~Y~V~~~~~~~~~~~~~sh~~~p 146 (193)
+..|...++.|+||++||+... |-+.+-|+.+|
T Consensus 78 ~~~f~~~D~~v~~a~~~gi~vr---------gHtLvWh~q~P 110 (341)
T 3niy_A 78 RYNFTPAEKHVEFAEENNMIVH---------GHTLVWHNQLP 110 (341)
T ss_dssp EEECHHHHHHHHHHHHTTCEEE---------EEEEECSSSCC
T ss_pred ccChHHHHHHHHHHHHCCCeEE---------eeeccccccCc
Confidence 6889999999999999999987 55666788877
No 14
>1n82_A Xylanase, intra-cellular xylanase; hydrolase; 1.45A {Geobacillus stearothermophilus} SCOP: c.1.8.3 PDB: 3mua_A* 2q8x_A* 3msd_A* 3msg_A* 3mui_A* 3ms8_A
Probab=40.34 E-value=17 Score=31.13 Aligned_cols=34 Identities=21% Similarity=0.265 Sum_probs=27.4
Q ss_pred eeeeCCHHHHHHHHHHcCCeeEEcccccccceeeeccccCCCC
Q 029470 105 GLSFDSKEAAREFAERHGWEYVAAGDIFRTFCAITISHTTTPL 147 (193)
Q Consensus 105 ~L~F~SkE~AIaYAer~Gw~Y~V~~~~~~~~~~~~~sh~~~p~ 147 (193)
+..|...+..|+||++||+... |-..+.|+.+|.
T Consensus 58 ~~~f~~~D~~v~~a~~~gi~v~---------ghtlvW~~q~P~ 91 (331)
T 1n82_A 58 KFTFQEADRIVDFACSHRMAVR---------GHTLVWHNQTPD 91 (331)
T ss_dssp BCCCHHHHHHHHHHHHTTCEEE---------EEEEEESSSCCG
T ss_pred ccChHHHHHHHHHHHHCCCEEE---------EEeeecCCCCCh
Confidence 5789999999999999999976 444456777664
No 15
>1nq6_A XYS1; glycoside hydrolase family 10, xylanase, xylan degradation,, hydrolase; 1.78A {Streptomyces halstedii} SCOP: c.1.8.3
Probab=39.44 E-value=17 Score=30.39 Aligned_cols=34 Identities=18% Similarity=0.246 Sum_probs=27.4
Q ss_pred eeeeCCHHHHHHHHHHcCCeeEEcccccccceeeeccccCCCC
Q 029470 105 GLSFDSKEAAREFAERHGWEYVAAGDIFRTFCAITISHTTTPL 147 (193)
Q Consensus 105 ~L~F~SkE~AIaYAer~Gw~Y~V~~~~~~~~~~~~~sh~~~p~ 147 (193)
+..|...++.++||++||+... |-+.+-|+.+|.
T Consensus 57 ~~~~~~~D~~v~~a~~~gi~v~---------gh~lvW~~~~P~ 90 (302)
T 1nq6_A 57 SFSFSAADRIVSHAQSKGMKVR---------GHTLVWHSQLPG 90 (302)
T ss_dssp BCCCHHHHHHHHHHHHHTCEEE---------EEEEEESTTCCT
T ss_pred cCCcHHHHHHHHHHHHCCCEEE---------EEecccCCCCCh
Confidence 5778899999999999999976 444556777775
No 16
>3emz_A Xylanase, endo-1,4-beta-xylanase; (alpha/beta)8 barrel, GH10 enzyme complex, hydrolase; HET: HXH; 2.08A {Bacillus SP} SCOP: c.1.8.3 PDB: 3emq_A* 3emc_A*
Probab=38.79 E-value=15 Score=32.03 Aligned_cols=34 Identities=21% Similarity=0.321 Sum_probs=28.3
Q ss_pred eeeeCCHHHHHHHHHHcCCeeEEcccccccceeeeccccCCCC
Q 029470 105 GLSFDSKEAAREFAERHGWEYVAAGDIFRTFCAITISHTTTPL 147 (193)
Q Consensus 105 ~L~F~SkE~AIaYAer~Gw~Y~V~~~~~~~~~~~~~sh~~~p~ 147 (193)
+..|...++.|+||++||+... |-+.+-|+.+|.
T Consensus 57 ~~~f~~~D~~v~~a~~~gi~vr---------gHtLvWh~q~P~ 90 (331)
T 3emz_A 57 EYTFEAADEIVDFAVARGIGVR---------GHTLVWHNQTPA 90 (331)
T ss_dssp BCCCHHHHHHHHHHHTTTCEEE---------ECCSBCSSSCCG
T ss_pred ccChhHHHHHHHHHHHCCCEEe---------eeeeeccccCcH
Confidence 5789999999999999999988 555566777774
No 17
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=36.49 E-value=27 Score=25.21 Aligned_cols=46 Identities=20% Similarity=0.330 Sum_probs=24.9
Q ss_pred eeeeCCHHHHHHHHH-HcCCeeEEcccccccceeeeccccCCCCCCCChhhhhh
Q 029470 105 GLSFDSKEAAREFAE-RHGWEYVAAGDIFRTFCAITISHTTTPLTPHPKKEKRK 157 (193)
Q Consensus 105 ~L~F~SkE~AIaYAe-r~Gw~Y~V~~~~~~~~~~~~~sh~~~p~~~~~~~~~~~ 157 (193)
-+.|.+.++|.+-.+ -||..+. ++-..+.++...-|. +.+|+++|+
T Consensus 96 fV~f~~~~~A~~Ai~~lng~~~~------g~~l~V~~a~~~~~~-~~~k~~~r~ 142 (143)
T 3egn_A 96 FIGLPNEKAAAKALKEANGYVLF------GKPMVVQFARSARPK-QDPKEGKRK 142 (143)
T ss_dssp EEECSSHHHHHHHHHHHTTBEET------TEECEEEECCCSCC-----------
T ss_pred EEEeCCHHHHHHHHHHhCCCEeC------CcEEEEEECCCCCCc-cCcchhhcc
Confidence 689999999998777 5776654 444566666554433 224444443
No 18
>3cui_A EXO-beta-1,4-glucanase; CEX, xylanase, isofagomine inhibitor, TIM barrel, cellulose degradation, glycosidase, hydrolase; HET: X4S; 1.50A {Cellulomonas fimi} PDB: 3cug_A* 3cuh_A* 3cuf_A* 3cuj_A* 1fh9_A* 1fh7_A 1fh8_A 1exp_A* 1fhd_A* 1j01_A* 2exo_A 2xyl_A 2his_A*
Probab=35.71 E-value=21 Score=30.03 Aligned_cols=34 Identities=21% Similarity=0.304 Sum_probs=26.3
Q ss_pred eeeeCCHHHHHHHHHHcCCeeEEcccccccceeeeccccCCCC
Q 029470 105 GLSFDSKEAAREFAERHGWEYVAAGDIFRTFCAITISHTTTPL 147 (193)
Q Consensus 105 ~L~F~SkE~AIaYAer~Gw~Y~V~~~~~~~~~~~~~sh~~~p~ 147 (193)
+..|...++.++||++||+... +-..+-|+.+|.
T Consensus 57 ~~~~~~~D~~~~~a~~~gi~v~---------ghtl~W~~~~P~ 90 (315)
T 3cui_A 57 SFSFGAGDRVASYAADTGKELY---------GHTLVWHSQLPD 90 (315)
T ss_dssp BCCCHHHHHHHHHHHHHTCEEE---------EEEEEESSSCCH
T ss_pred cCChHHHHHHHHHHHHCCCEEE---------EEeeecCCCCCH
Confidence 5779999999999999999976 333345776663
No 19
>2fiu_A Conserved hypothetical protein; alpha-beta, dimeric alpha-beta barrels, structural genomics, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.58.4.16
Probab=32.99 E-value=27 Score=25.15 Aligned_cols=15 Identities=20% Similarity=0.180 Sum_probs=13.7
Q ss_pred eeeeCCHHHHHHHHH
Q 029470 105 GLSFDSKEAAREFAE 119 (193)
Q Consensus 105 ~L~F~SkE~AIaYAe 119 (193)
.+.|+|.|+|.++..
T Consensus 58 iieFpS~~aa~~~~~ 72 (99)
T 2fiu_A 58 VIEFPSVQHAIDCYN 72 (99)
T ss_dssp EEEESSHHHHHHHHH
T ss_pred EEECCCHHHHHHHHc
Confidence 799999999999875
No 20
>3bsu_A Ribonuclease H1, RNAse H1; RNAse H, RNA/DNA hybrid; HET: DNA 5IU; 2.10A {Homo sapiens}
Probab=32.71 E-value=24 Score=23.28 Aligned_cols=16 Identities=19% Similarity=0.333 Sum_probs=14.1
Q ss_pred eeeeCCHHHHHHHHHH
Q 029470 105 GLSFDSKEAAREFAER 120 (193)
Q Consensus 105 ~L~F~SkE~AIaYAer 120 (193)
.-+|.|+++|.+|.+.
T Consensus 35 yK~F~t~~eA~~~l~~ 50 (53)
T 3bsu_A 35 FKKFATEDEAWAFVRK 50 (53)
T ss_dssp EEEESSHHHHHHHHHC
T ss_pred cCCCCCHHHHHHHHHh
Confidence 5789999999999864
No 21
>1i1w_A Endo-1,4-beta-xylanase; xylan degradation, hydrolase, glycosidase, enzyme, ultra HIG resolution, cryo temperature, 1; HET: PCA; 0.89A {Thermoascus aurantiacus} SCOP: c.1.8.3 PDB: 1i1x_A* 2bnj_A* 1gok_A 1gom_A 1goo_A 1goq_A* 1gor_A* 1k6a_A 3o2l_A 3nyd_A* 1tux_A 1b31_A 1b30_A 1b3v_A* 1b3w_A* 1b3x_A* 1b3y_A* 1b3z_A* 1bg4_A
Probab=32.60 E-value=26 Score=29.59 Aligned_cols=33 Identities=15% Similarity=0.255 Sum_probs=25.8
Q ss_pred eeeeCCHHHHHHHHHHcCCeeEEcccccccceeeeccccCCC
Q 029470 105 GLSFDSKEAAREFAERHGWEYVAAGDIFRTFCAITISHTTTP 146 (193)
Q Consensus 105 ~L~F~SkE~AIaYAer~Gw~Y~V~~~~~~~~~~~~~sh~~~p 146 (193)
+..|...++.++||++||+... |-..+-|+.+|
T Consensus 60 ~~~f~~~D~~v~~a~~~gi~v~---------ghtl~W~~q~P 92 (303)
T 1i1w_A 60 NFNFAGADYLVNWAQQNGKLIR---------GHTLVWHSQLP 92 (303)
T ss_dssp BCCCHHHHHHHHHHHHHTCEEE---------EEEEECSTTCC
T ss_pred ccChhhHHHHHHHHHHCCCEEE---------EeeccccCCCC
Confidence 5789999999999999999976 33333566666
No 22
>1xyz_A 1,4-beta-D-xylan-xylanohydrolase; glycosyl hydrolase, xylanase, family F/10 of glycosyl hydrolases, glycosyltransferase; 1.40A {Clostridium thermocellum} SCOP: c.1.8.3
Probab=32.15 E-value=28 Score=30.00 Aligned_cols=33 Identities=27% Similarity=0.399 Sum_probs=26.1
Q ss_pred eeeeCCHHHHHHHHHHcCCeeEEcccccccceeeeccccCCC
Q 029470 105 GLSFDSKEAAREFAERHGWEYVAAGDIFRTFCAITISHTTTP 146 (193)
Q Consensus 105 ~L~F~SkE~AIaYAer~Gw~Y~V~~~~~~~~~~~~~sh~~~p 146 (193)
+..|...++.++||++||+... |-..+-|+.+|
T Consensus 83 ~~~f~~~D~~v~~a~~~gi~v~---------ghtlvW~~q~P 115 (347)
T 1xyz_A 83 VFDFSKGDQLLAFAERNGMQMR---------GHTLIWHNQNP 115 (347)
T ss_dssp BCCCHHHHHHHHHHHHTTCEEE---------EEEEECSSSCC
T ss_pred cCChHHHHHHHHHHHHCCCEEE---------EEeeeccccCc
Confidence 5779999999999999999976 34444576665
No 23
>1v0l_A Endo-1,4-beta-xylanase A; glycoside hydrolase family 10, xylan degradation, isofagomine, hydrolase; 0.98A {Streptomyces lividans} SCOP: c.1.8.3 PDB: 1e0x_A 1e0w_A* 1od8_A 1v0k_A 1v0m_A 1v0n_A 1e0v_A* 1xas_A 2g3i_A 2g3j_A* 2g4f_A 1v6y_A
Probab=32.02 E-value=28 Score=29.71 Aligned_cols=33 Identities=18% Similarity=0.277 Sum_probs=26.0
Q ss_pred eeeeCCHHHHHHHHHHcCCeeEEcccccccceeeeccccCCC
Q 029470 105 GLSFDSKEAAREFAERHGWEYVAAGDIFRTFCAITISHTTTP 146 (193)
Q Consensus 105 ~L~F~SkE~AIaYAer~Gw~Y~V~~~~~~~~~~~~~sh~~~p 146 (193)
+..|...+..++||++||+... |-..+-|+-+|
T Consensus 58 ~~~f~~~D~~v~~a~~~gi~v~---------ghtlvW~~q~P 90 (313)
T 1v0l_A 58 QFNFSSADRVYNWAVQNGKQVR---------GHTLAWHSQQP 90 (313)
T ss_dssp BCCCHHHHHHHHHHHHTTCEEE---------EEEEECSSSCC
T ss_pred ccCchHHHHHHHHHHHCCCEEE---------EEeecCcCcCc
Confidence 5889999999999999999976 33334566665
No 24
>1qhk_A RNAse HI, protein (ribonuclease HI); ribonuclease HI N-terminal domain, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.100.1.2
Probab=31.39 E-value=19 Score=23.24 Aligned_cols=14 Identities=36% Similarity=0.425 Sum_probs=12.5
Q ss_pred eeeeCCHHHHHHHH
Q 029470 105 GLSFDSKEAAREFA 118 (193)
Q Consensus 105 ~L~F~SkE~AIaYA 118 (193)
.=+|.|+++|.+|.
T Consensus 33 yK~F~t~~eA~~~l 46 (47)
T 1qhk_A 33 YKKFNSYEQAKSFL 46 (47)
T ss_dssp CEEESCHHHHHHHH
T ss_pred cCCCCCHHHHHHHh
Confidence 57899999999985
No 25
>3jtn_A YPBH, adapter protein MECA 2; adaptor protein, competence, sporulation, protein binding; 2.09A {Bacillus subtilis} PDB: 3jto_A
Probab=30.76 E-value=30 Score=24.47 Aligned_cols=18 Identities=22% Similarity=0.139 Sum_probs=16.1
Q ss_pred eeeeCCHHHHHHHHHHcC
Q 029470 105 GLSFDSKEAAREFAERHG 122 (193)
Q Consensus 105 ~L~F~SkE~AIaYAer~G 122 (193)
.++|++.|+.|++|+...
T Consensus 4 i~~F~~~edvI~~a~~l~ 21 (91)
T 3jtn_A 4 IYQFHSFEDIIQLSESLQ 21 (91)
T ss_dssp EEEESSHHHHHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHcc
Confidence 689999999999999853
No 26
>3jtp_A Adapter protein MECA 1; MECA;adaptor protein;degradation TAG, competence, sporulation, protein binding; 2.17A {Bacillus subtilis} PDB: 2y1r_I* 3pxg_a
Probab=30.54 E-value=25 Score=25.35 Aligned_cols=18 Identities=17% Similarity=0.117 Sum_probs=16.2
Q ss_pred eeeeCCHHHHHHHHHHcCC
Q 029470 105 GLSFDSKEAAREFAERHGW 123 (193)
Q Consensus 105 ~L~F~SkE~AIaYAer~Gw 123 (193)
.+.|++.|+.|++|+ .+.
T Consensus 10 i~~F~d~edvI~~a~-~~~ 27 (98)
T 3jtp_A 10 VLRFGDFEDVISLSK-LNV 27 (98)
T ss_dssp EEEESSHHHHHHHHH-TTC
T ss_pred EEEcCCHHHHHHHhC-CCC
Confidence 699999999999999 654
No 27
>1ta3_B Endo-1,4-beta-xylanase; beta alpha barrel (XIP-I), beta alpha barrel (xylanase), HYD inhibitor-hydrolase complex; HET: NAG; 1.70A {Emericella nidulans} SCOP: c.1.8.3
Probab=30.21 E-value=32 Score=29.19 Aligned_cols=33 Identities=12% Similarity=0.261 Sum_probs=25.8
Q ss_pred eeeeCCHHHHHHHHHHcCCeeEEcccccccceeeeccccCCC
Q 029470 105 GLSFDSKEAAREFAERHGWEYVAAGDIFRTFCAITISHTTTP 146 (193)
Q Consensus 105 ~L~F~SkE~AIaYAer~Gw~Y~V~~~~~~~~~~~~~sh~~~p 146 (193)
+..|...++.++||++||+... |-..+=|+.+|
T Consensus 59 ~~~f~~~D~~v~~a~~~gi~v~---------ghtlvW~~q~P 91 (303)
T 1ta3_B 59 NFGWSGADYLVDYATQHNKKVR---------GHTLVWHSQLP 91 (303)
T ss_dssp BCCCHHHHHHHHHHHHTTCEEE---------EEEEECSSSCC
T ss_pred ccCchHHHHHHHHHHHCCCEEE---------EeeccccCCCC
Confidence 5789999999999999999977 33333466666
No 28
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=29.10 E-value=25 Score=23.41 Aligned_cols=39 Identities=10% Similarity=0.009 Sum_probs=20.6
Q ss_pred eeeeCCHHHHHHHHH-HcCCeeEEcccccccceeeeccccCCCCCC
Q 029470 105 GLSFDSKEAAREFAE-RHGWEYVAAGDIFRTFCAITISHTTTPLTP 149 (193)
Q Consensus 105 ~L~F~SkE~AIaYAe-r~Gw~Y~V~~~~~~~~~~~~~sh~~~p~~~ 149 (193)
-+.|.+.|+|.+-.+ -+|..+. ++-..+.+++.-.|..|
T Consensus 49 fV~f~~~~~a~~Ai~~l~g~~~~------gr~i~V~~~~~~~~~~~ 88 (90)
T 3p5t_L 49 LVGVGSEASSKKLMDLLPKRELH------GQNPVVTPSNKLEHHHH 88 (90)
T ss_dssp EECC-CHHHHHHHHHHGGGSCSS------SCCCEECCC--------
T ss_pred EEEECCHHHHHHHHHHcCCCeeC------CEEEEEEECCCCccccC
Confidence 689999999987764 6776654 44445555554444333
No 29
>1r85_A Endo-1,4-beta-xylanase; hydrolase; HET: GOL; 1.45A {Geobacillus stearothermophilus} SCOP: c.1.8.3 PDB: 1hiz_A* 1r87_A* 3mmd_A* 1r86_A
Probab=28.49 E-value=31 Score=30.45 Aligned_cols=22 Identities=18% Similarity=0.434 Sum_probs=20.6
Q ss_pred eeeeCCHHHHHHHHHHcCCeeE
Q 029470 105 GLSFDSKEAAREFAERHGWEYV 126 (193)
Q Consensus 105 ~L~F~SkE~AIaYAer~Gw~Y~ 126 (193)
+..|...+..++||++||+...
T Consensus 72 ~~~f~~~D~~v~~a~~~gi~vr 93 (379)
T 1r85_A 72 KFNFEQADRIVKFAKANGMDIR 93 (379)
T ss_dssp BCCCHHHHHHHHHHHHTTCEEE
T ss_pred ccCchhHHHHHHHHHHCCCEEE
Confidence 6889999999999999999987
No 30
>2dep_A Xylanase B, thermostable celloxylanase; glycosidase, xylan degradation, family 10, structural genomics, NPPSFA; 1.80A {Clostridium stercorarium}
Probab=27.83 E-value=35 Score=29.59 Aligned_cols=22 Identities=18% Similarity=0.401 Sum_probs=20.3
Q ss_pred eeeeCCHHHHHHHHHHcCCeeE
Q 029470 105 GLSFDSKEAAREFAERHGWEYV 126 (193)
Q Consensus 105 ~L~F~SkE~AIaYAer~Gw~Y~ 126 (193)
+..|...+..|+||++||+...
T Consensus 59 ~~~f~~~D~~v~~a~~~gi~v~ 80 (356)
T 2dep_A 59 NFQWADADRIVQFAKENGMELR 80 (356)
T ss_dssp BCCCHHHHHHHHHHHHTTCEEE
T ss_pred ccCchHHHHHHHHHHHCCCEEE
Confidence 5789999999999999999977
No 31
>2uwf_A Endoxylanase, alkaline active endoxylanase; hydrolase, xylan degradation, xylanase structure, glycosidase, alkaliphilic; 2.10A {Bacillus halodurans} PDB: 2f8q_A 2fgl_A*
Probab=26.74 E-value=31 Score=30.09 Aligned_cols=22 Identities=23% Similarity=0.430 Sum_probs=20.4
Q ss_pred eeeeCCHHHHHHHHHHcCCeeE
Q 029470 105 GLSFDSKEAAREFAERHGWEYV 126 (193)
Q Consensus 105 ~L~F~SkE~AIaYAer~Gw~Y~ 126 (193)
+..|...+..|+||++||+...
T Consensus 62 ~~~f~~~D~~v~~a~~~gi~v~ 83 (356)
T 2uwf_A 62 EWNWEGADKIVEFARKHNMELR 83 (356)
T ss_dssp BCCCHHHHHHHHHHHHHTCEEE
T ss_pred ccCchHHHHHHHHHHHCCCEEE
Confidence 5789999999999999999977
No 32
>1ur1_A Endoxylanase; hydrolase, family 10, glycoside hydrolase, hemicellulose, xylan degradation; HET: XYS AHR; 1.43A {Cellvibrio mixtus} SCOP: c.1.8.3 PDB: 1uqy_A* 1uqz_A* 1ur2_A* 2cnc_A*
Probab=26.48 E-value=40 Score=29.72 Aligned_cols=34 Identities=15% Similarity=0.203 Sum_probs=26.7
Q ss_pred eeeeCCHHHHHHHHHHcCCeeEEcccccccceeeeccccCCCC
Q 029470 105 GLSFDSKEAAREFAERHGWEYVAAGDIFRTFCAITISHTTTPL 147 (193)
Q Consensus 105 ~L~F~SkE~AIaYAer~Gw~Y~V~~~~~~~~~~~~~sh~~~p~ 147 (193)
+..|...+..++||++||+... |-..+-|+.+|.
T Consensus 81 ~~~f~~~D~~v~~a~~~gi~vr---------gHtlvW~~q~P~ 114 (378)
T 1ur1_A 81 QWNWKDADAFVAFGTKHNLHMV---------GHTLVWHSQIHD 114 (378)
T ss_dssp CBCCHHHHHHHHHHHHTTCEEE---------EEEEECSSSSCG
T ss_pred ccCchHHHHHHHHHHHCCCEEE---------eecccccccCch
Confidence 5889999999999999999977 333345666663
No 33
>4dgh_A Sulfate permease family protein; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.90A {Vibrio cholerae} PDB: 3mgl_A*
Probab=26.24 E-value=32 Score=24.65 Aligned_cols=15 Identities=20% Similarity=0.027 Sum_probs=13.3
Q ss_pred eeCCHHHHHHHHHHc
Q 029470 107 SFDSKEAAREFAERH 121 (193)
Q Consensus 107 ~F~SkE~AIaYAer~ 121 (193)
.|+|.++|++.|+.+
T Consensus 111 i~~s~~~Al~~~~~~ 125 (130)
T 4dgh_A 111 VYPVFEGALSAALTE 125 (130)
T ss_dssp EESSHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHH
Confidence 699999999999864
No 34
>3lo3_A Uncharacterized conserved protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.38A {Colwellia psychrerythraea} SCOP: d.58.4.0
Probab=25.50 E-value=42 Score=23.85 Aligned_cols=15 Identities=33% Similarity=0.390 Sum_probs=13.7
Q ss_pred eeeeCCHHHHHHHHH
Q 029470 105 GLSFDSKEAAREFAE 119 (193)
Q Consensus 105 ~L~F~SkE~AIaYAe 119 (193)
-+.|+|.|+|.++..
T Consensus 57 iieFps~~aa~a~y~ 71 (94)
T 3lo3_A 57 ILEFPSREDAYNWYH 71 (94)
T ss_dssp EEEESSHHHHHHHHH
T ss_pred EEECCCHHHHHHHHC
Confidence 899999999999865
No 35
>3syx_A Sprouty-related, EVH1 domain-containing protein 1; WH1 domain, human sprouty-related, EVH1 domain-containing PR Q7Z699; 2.45A {Homo sapiens}
Probab=24.73 E-value=38 Score=26.55 Aligned_cols=45 Identities=22% Similarity=0.293 Sum_probs=28.8
Q ss_pred CCCcEEEcCCCC--CC---cCCCcCccCCCCccCCcCCceeeeCCHHHHHHHHHHc
Q 029470 71 LGRWKINFMSTQ--KW---ENPLMGWTSTGDPYANVGDAGLSFDSKEAAREFAERH 121 (193)
Q Consensus 71 t~~W~LeFe~~~--rw---enPLMGWTSS~DplsqV~~~~L~F~SkE~AIaYAer~ 121 (193)
.+.++|++.-.. ++ ...+--|.-+ | ++- -|.|.|+|||-+|++..
T Consensus 66 d~~vvinc~I~~~l~Ynkatp~FHqWrd~-~---~~y--GL~F~S~~dA~~F~~~~ 115 (130)
T 3syx_A 66 DKMVVLECMLKKDLIYNKVTPTFHHWKID-D---KKF--GLTFQSPADARAFDRGI 115 (130)
T ss_dssp TCCEEEEEECCTTCEEEEEETTEEEEEET-T---EEE--EEEESSHHHHHHHHHHH
T ss_pred CCeEEEeeeecCCceEEeccccccccccc-C---eEe--ecccCCHHHHHHHHHHH
Confidence 456888876431 11 1334456533 2 332 69999999999999854
No 36
>1qc6_A EVH1 domain from ENA/VAsp-like protein; AN incomplete seven stranded anti-parallel beta barrel closed by AN alpha helix, EVH1 domain; 2.60A {Mus musculus} SCOP: b.55.1.4
Probab=24.42 E-value=43 Score=25.33 Aligned_cols=18 Identities=44% Similarity=0.593 Sum_probs=16.0
Q ss_pred eeeeCCHHHHHHHHHHcC
Q 029470 105 GLSFDSKEAAREFAERHG 122 (193)
Q Consensus 105 ~L~F~SkE~AIaYAer~G 122 (193)
.|.|.|.|||-+|.++..
T Consensus 89 GL~F~se~eA~~F~~~~~ 106 (130)
T 1qc6_A 89 GLNFASKEEATTFSNAML 106 (130)
T ss_dssp EEEESCHHHHHHHHHHHH
T ss_pred EEecCCHHHHHHHHHHHH
Confidence 799999999999998753
No 37
>2d1z_A Endo-1,4-beta-D-xylanase; TIM-barrel, retaining enzyme, catalytic-site mutant, chemica hydrolase; 1.60A {Streptomyces olivaceoviridis} PDB: 2d20_A* 2d22_A 2d23_A 2d24_A* 1xyf_A 1isw_A* 1isx_A* 1isy_A* 1isv_A* 1it0_A* 1v6u_A* 1v6v_A* 1v6w_A* 1v6x_A* 1isz_A
Probab=23.52 E-value=47 Score=29.09 Aligned_cols=22 Identities=14% Similarity=0.293 Sum_probs=20.2
Q ss_pred eeeeCCHHHHHHHHHHcCCeeE
Q 029470 105 GLSFDSKEAAREFAERHGWEYV 126 (193)
Q Consensus 105 ~L~F~SkE~AIaYAer~Gw~Y~ 126 (193)
+..|...++.++||++||+...
T Consensus 58 ~~~f~~~D~~~~~a~~~gi~v~ 79 (436)
T 2d1z_A 58 QFNFSAGDRVYNWAVQNGKQVR 79 (436)
T ss_dssp BCCCHHHHHHHHHHHHTTCEEE
T ss_pred ccChHHHHHHHHHHHHCCCEEE
Confidence 5789999999999999999976
No 38
>2hw0_A Replicase; alpha+beta, hydrolase, replication; NMR {Porcine circovirus 2}
Probab=22.52 E-value=38 Score=25.59 Aligned_cols=16 Identities=13% Similarity=0.381 Sum_probs=13.8
Q ss_pred eCCHHHHHHHHHHcCC
Q 029470 108 FDSKEAAREFAERHGW 123 (193)
Q Consensus 108 F~SkE~AIaYAer~Gw 123 (193)
=.|.++|++||.|.|=
T Consensus 86 rgs~~q~~~Yc~Keg~ 101 (115)
T 2hw0_A 86 KGTDQQNKEYCSKEGN 101 (115)
T ss_dssp CSCHHHHHHHHHTTSC
T ss_pred cCCHHHHHHHhccCCc
Confidence 3688999999999983
No 39
>2ebb_A Pterin-4-alpha-carbinolamine dehydratase; coenzyme biosyntheses, GK1984, structural genomics, NPPSFA; 1.60A {Geobacillus kaustophilus}
Probab=22.33 E-value=48 Score=24.24 Aligned_cols=33 Identities=18% Similarity=0.323 Sum_probs=25.1
Q ss_pred CCCcCccCCCCc-cCCcCCceeeeCCHHHHHHHHHHcC
Q 029470 86 NPLMGWTSTGDP-YANVGDAGLSFDSKEAAREFAERHG 122 (193)
Q Consensus 86 nPLMGWTSS~Dp-lsqV~~~~L~F~SkE~AIaYAer~G 122 (193)
..|-||+-.++. +.. ..+|.+-.+|++|..+-+
T Consensus 13 ~~l~gW~~~~~~~i~r----~f~F~~f~~a~~F~~~Va 46 (101)
T 2ebb_A 13 EKADGWKLADERWIVK----KYRFQDYLQGIEFVRRIA 46 (101)
T ss_dssp HTSTTCEEETTTEEEE----EEECSSHHHHHHHHHHHH
T ss_pred hcCCCCeECCCCCEEE----EEEeCCHHHHHHHHHHHH
Confidence 357799888887 433 799999999999876543
No 40
>2j6v_A UV endonuclease, UVDE; plasmid, TIM barrel, DNA repair, DNA binding protein, lyase; HET: KCX ALY; 1.55A {Thermus thermophilus} PDB: 3bzg_A 3c0s_A* 3c0l_A 3c0q_A* 3bzj_A
Probab=22.26 E-value=27 Score=29.59 Aligned_cols=34 Identities=24% Similarity=0.478 Sum_probs=28.1
Q ss_pred eeeCCHHHHHHHHHHcCCeeEEcccccccceeeeccccCCCCCCCC
Q 029470 106 LSFDSKEAAREFAERHGWEYVAAGDIFRTFCAITISHTTTPLTPHP 151 (193)
Q Consensus 106 L~F~SkE~AIaYAer~Gw~Y~V~~~~~~~~~~~~~sh~~~p~~~~~ 151 (193)
-.+.+.++++.||+++|+.+. -+|-|+.|.-.||
T Consensus 58 ~nl~~l~~~l~~~~~~gi~~~------------ri~s~~f~~ft~~ 91 (301)
T 2j6v_A 58 ENLRDLERILRFNADHGFALF------------RIGQHLIPFASHP 91 (301)
T ss_dssp HHHHHHHHHHHHHHHHTCCEE------------ECCGGGSTTTTST
T ss_pred HHHHHHHHHHHHHHHcCCCEE------------EeccCcccccCCC
Confidence 356889999999999999988 4577788887776
No 41
>1xod_A Spred1; sprouty, EVH1, peptide-binding, signaling protein; 1.15A {Xenopus tropicalis} SCOP: b.55.1.4 PDB: 1tj6_A
Probab=21.81 E-value=51 Score=24.81 Aligned_cols=17 Identities=41% Similarity=0.634 Sum_probs=15.5
Q ss_pred eeeeCCHHHHHHHHHHc
Q 029470 105 GLSFDSKEAAREFAERH 121 (193)
Q Consensus 105 ~L~F~SkE~AIaYAer~ 121 (193)
-|.|.|++||-+|+++.
T Consensus 92 GL~F~se~eA~~F~~~v 108 (118)
T 1xod_A 92 GLTFQSPADARAFDRGI 108 (118)
T ss_dssp EEEESSHHHHHHHHHHH
T ss_pred EEecCCHHHHHHHHHHH
Confidence 79999999999999864
No 42
>1usm_A DCOH, hepatocyte nuclear factor 1-alpha; transcriptional stimulator, dimerization cofactor, dehydratase, 4A-carbinolamine dehydratase; 1.2A {Thermus thermophilus} SCOP: d.74.1.1 PDB: 1uso_A
Probab=21.70 E-value=50 Score=23.02 Aligned_cols=32 Identities=25% Similarity=0.437 Sum_probs=20.8
Q ss_pred cCccCCCCccCCcCCceeeeCCHHHHHHHHHHcC
Q 029470 89 MGWTSTGDPYANVGDAGLSFDSKEAAREFAERHG 122 (193)
Q Consensus 89 MGWTSS~DplsqV~~~~L~F~SkE~AIaYAer~G 122 (193)
+||+-.+|+.. +. ...+|.+-.+|++|..+-+
T Consensus 1 ~gW~~~~~~~~-i~-r~f~F~~f~~a~~F~~~Va 32 (80)
T 1usm_A 1 MDWEERENLKR-LV-KTFAFPNFREALDFANRVG 32 (80)
T ss_dssp CCCEEC---CC-EE-EEEECSSHHHHHHHHHHHH
T ss_pred CCCeEeCCccE-EE-EEEEeCCHHHHHHHHHHHH
Confidence 58887777432 21 3789999999999876543
No 43
>2kln_A Probable sulphate-transport transmembrane protein; SLC26, sulfate, antisigma factor antagonist, ensemble structures, transport protein; NMR {Mycobacterium bovis}
Probab=21.33 E-value=35 Score=24.44 Aligned_cols=16 Identities=19% Similarity=0.065 Sum_probs=14.1
Q ss_pred eeeCCHHHHHHHHHHc
Q 029470 106 LSFDSKEAAREFAERH 121 (193)
Q Consensus 106 L~F~SkE~AIaYAer~ 121 (193)
--|+|.++|++.|++.
T Consensus 109 ~i~~t~~~Al~~~~~~ 124 (130)
T 2kln_A 109 HIFMTLPTAVQAFRRR 124 (130)
T ss_dssp EEESCHHHHHHHHTTC
T ss_pred eeECCHHHHHHHHHhh
Confidence 4699999999999985
No 44
>4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A
Probab=20.33 E-value=56 Score=23.90 Aligned_cols=26 Identities=23% Similarity=0.451 Sum_probs=22.4
Q ss_pred eeeeCCHHHHHHHHHHcCCeeEEccc
Q 029470 105 GLSFDSKEAAREFAERHGWEYVAAGD 130 (193)
Q Consensus 105 ~L~F~SkE~AIaYAer~Gw~Y~V~~~ 130 (193)
.+..++.++..+|++++|++|.+.-|
T Consensus 69 ~vs~d~~~~~~~~~~~~~~~~p~l~D 94 (157)
T 4g2e_A 69 GISVDPPFSNKAFKEHNKLNFTILSD 94 (157)
T ss_dssp EEESSCHHHHHHHHHHTTCCSEEEEC
T ss_pred eecccchhHHHHHHHHcCCcEEEEEc
Confidence 56779999999999999999987544
Done!