Query 029472
Match_columns 193
No_of_seqs 117 out of 1024
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 13:27:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029472.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029472hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01398 RPI_A RPI_A: Ribose 5- 100.0 7.2E-39 1.5E-43 268.1 17.4 158 26-192 2-160 (213)
2 PRK00702 ribose-5-phosphate is 100.0 6.8E-39 1.5E-43 269.6 16.9 156 24-189 5-161 (220)
3 PLN02384 ribose-5-phosphate is 100.0 2.3E-38 5E-43 271.4 19.0 175 4-190 20-199 (264)
4 TIGR00021 rpiA ribose 5-phosph 100.0 1.5E-38 3.2E-43 267.2 17.2 155 26-189 2-157 (218)
5 PRK13978 ribose-5-phosphate is 100.0 6.6E-37 1.4E-41 258.2 18.3 158 24-190 6-166 (228)
6 COG0120 RpiA Ribose 5-phosphat 100.0 1.5E-36 3.2E-41 254.7 17.0 160 23-192 4-164 (227)
7 PF00455 DeoRC: DeoR C termina 100.0 1.4E-28 3E-33 197.5 12.3 121 21-154 2-142 (161)
8 KOG3075 Ribose 5-phosphate iso 100.0 1.4E-27 3.1E-32 202.2 15.4 170 17-192 20-194 (261)
9 PRK10681 DNA-binding transcrip 99.9 2.8E-27 6E-32 202.1 12.5 151 15-178 69-246 (252)
10 PRK10906 DNA-binding transcrip 99.9 4.7E-27 1E-31 201.0 13.3 151 15-178 68-245 (252)
11 PRK09802 DNA-binding transcrip 99.9 8.3E-27 1.8E-31 201.2 13.9 155 14-183 82-263 (269)
12 PF06026 Rib_5-P_isom_A: Ribos 99.9 9.9E-27 2.1E-31 189.3 10.3 114 70-191 1-116 (173)
13 PRK10411 DNA-binding transcrip 99.9 2.3E-26 5E-31 195.4 12.9 126 15-154 70-215 (240)
14 COG1349 GlpR Transcriptional r 99.9 3.7E-26 8E-31 195.5 13.8 150 15-177 68-244 (253)
15 PRK10434 srlR DNA-bindng trans 99.9 5.3E-26 1.1E-30 194.7 14.3 154 15-184 68-249 (256)
16 PRK13509 transcriptional repre 99.9 6.2E-26 1.3E-30 193.8 14.0 149 15-178 70-244 (251)
17 COG1184 GCD2 Translation initi 98.1 7.4E-05 1.6E-09 65.9 13.3 123 22-156 102-238 (301)
18 PRK08335 translation initiatio 98.1 5.4E-05 1.2E-09 66.1 12.4 129 23-163 93-236 (275)
19 TIGR00511 ribulose_e2b2 ribose 98.1 7.2E-05 1.6E-09 65.9 13.0 129 25-165 101-245 (301)
20 PRK08535 translation initiatio 98.1 4.4E-05 9.5E-10 67.5 11.2 128 26-165 107-250 (310)
21 TIGR00524 eIF-2B_rel eIF-2B al 98.0 7.2E-05 1.6E-09 66.1 12.0 127 27-165 106-259 (303)
22 KOG1466 Translation initiation 98.0 7.2E-05 1.6E-09 64.9 10.3 128 26-166 117-262 (313)
23 TIGR00512 salvage_mtnA S-methy 98.0 0.00018 4E-09 64.3 13.1 128 26-165 129-287 (331)
24 PF01008 IF-2B: Initiation fac 97.7 0.00027 5.9E-09 60.9 9.6 119 25-155 93-226 (282)
25 PRK05720 mtnA methylthioribose 97.6 0.0013 2.9E-08 59.1 13.1 127 27-165 134-287 (344)
26 PRK05772 translation initiatio 97.5 0.0016 3.5E-08 59.0 12.1 129 24-164 151-306 (363)
27 PRK06371 translation initiatio 97.4 0.0041 8.8E-08 55.7 13.2 126 27-164 124-276 (329)
28 PRK06036 translation initiatio 97.4 0.0042 9.1E-08 55.8 12.7 124 27-163 135-284 (339)
29 COG2057 AtoA Acyl CoA:acetate/ 97.4 0.00016 3.4E-09 61.3 3.3 107 25-151 7-151 (225)
30 PRK08334 translation initiatio 96.9 0.016 3.5E-07 52.4 12.2 127 26-165 147-300 (356)
31 PRK06372 translation initiatio 96.7 0.03 6.6E-07 48.4 11.6 112 28-154 76-200 (253)
32 TIGR02428 pcaJ_scoB_fam 3-oxoa 96.6 0.014 3E-07 48.9 8.2 106 26-149 3-144 (207)
33 COG1788 AtoD Acyl CoA:acetate/ 96.2 0.033 7E-07 47.3 8.3 49 25-77 3-54 (220)
34 KOG1465 Translation initiation 95.6 0.22 4.8E-06 44.4 11.2 128 29-168 152-301 (353)
35 TIGR03458 YgfH_subfam succinat 95.1 0.14 3E-06 48.3 9.1 111 30-148 5-158 (485)
36 PF04198 Sugar-bind: Putative 94.4 0.037 8E-07 47.5 3.2 78 30-111 43-157 (255)
37 PRK09920 acetyl-CoA:acetoacety 93.1 0.15 3.2E-06 43.2 4.5 43 30-76 8-53 (219)
38 COG2390 DeoR Transcriptional r 93.1 0.13 2.9E-06 45.9 4.4 78 30-111 105-220 (321)
39 PF02550 AcetylCoA_hydro: Acet 92.6 0.3 6.4E-06 40.2 5.6 50 98-156 124-173 (198)
40 TIGR01584 citF citrate lyase, 92.4 0.46 9.9E-06 44.8 7.1 103 36-148 39-188 (492)
41 PRK15418 transcriptional regul 92.2 0.2 4.4E-06 44.4 4.4 42 31-75 107-148 (318)
42 TIGR02429 pcaI_scoA_fam 3-oxoa 91.8 0.25 5.5E-06 41.8 4.3 42 31-76 10-54 (222)
43 PF04223 CitF: Citrate lyase, 90.9 1.2 2.6E-05 41.5 8.0 102 36-148 16-165 (466)
44 COG0182 Predicted translation 90.2 5.1 0.00011 36.1 11.1 126 27-165 137-290 (346)
45 KOG1467 Translation initiation 90.1 3.2 7E-05 39.3 10.2 116 29-155 349-477 (556)
46 COG3051 CitF Citrate lyase, al 88.2 1.2 2.5E-05 41.0 5.7 104 37-148 62-210 (513)
47 PF01144 CoA_trans: Coenzyme A 86.5 1.4 3.1E-05 36.3 5.0 43 31-78 6-52 (217)
48 COG0427 ACH1 Acetyl-CoA hydrol 84.5 2.4 5.1E-05 40.1 5.9 117 24-148 13-171 (501)
49 cd00458 SugarP_isomerase Sugar 79.1 8.5 0.00018 30.7 6.6 40 38-77 19-58 (169)
50 PF02254 TrkA_N: TrkA-N domain 77.5 9.7 0.00021 27.6 6.1 46 42-92 1-46 (116)
51 TIGR01584 citF citrate lyase, 75.9 4 8.8E-05 38.6 4.4 38 24-61 230-273 (492)
52 COG4670 Acyl CoA:acetate/3-ket 69.0 8.2 0.00018 36.6 4.7 50 26-75 4-57 (527)
53 PF08679 DsrD: Dissimilatory s 61.6 2 4.4E-05 29.9 -0.6 33 21-53 29-61 (67)
54 COG0373 HemA Glutamyl-tRNA red 60.6 36 0.00077 31.7 7.1 76 32-111 171-251 (414)
55 PF00070 Pyr_redox: Pyridine n 58.1 17 0.00037 24.8 3.7 30 42-76 2-31 (80)
56 TIGR01110 mdcA malonate decarb 57.0 1.8E+02 0.0038 28.2 11.2 109 31-148 32-183 (543)
57 PRK00443 nagB glucosamine-6-ph 57.0 17 0.00038 30.5 4.3 22 39-60 33-54 (261)
58 cd01399 GlcN6P_deaminase GlcN6 53.6 14 0.0003 30.3 3.1 32 29-60 7-40 (232)
59 PRK10646 ADP-binding protein; 50.6 32 0.0007 27.5 4.6 38 19-59 8-49 (153)
60 PF01488 Shikimate_DH: Shikima 48.6 39 0.00085 25.7 4.7 72 31-106 4-83 (135)
61 KOG2828 Acetyl-CoA hydrolase [ 46.9 20 0.00043 33.2 3.1 117 31-156 30-180 (454)
62 PRK10669 putative cation:proto 44.3 71 0.0015 30.2 6.6 49 39-92 417-465 (558)
63 TIGR03458 YgfH_subfam succinat 42.8 39 0.00084 32.0 4.5 51 24-78 223-283 (485)
64 PRK10494 hypothetical protein; 41.1 1E+02 0.0022 26.5 6.5 63 28-93 141-207 (259)
65 cd00423 Pterin_binding Pterin 39.4 1.4E+02 0.003 25.4 7.1 61 26-91 24-100 (258)
66 COG0802 Predicted ATPase or ki 37.4 61 0.0013 26.0 4.2 54 20-82 6-65 (149)
67 PRK03562 glutathione-regulated 37.0 88 0.0019 30.3 6.1 49 39-92 400-448 (621)
68 PF02887 PK_C: Pyruvate kinase 36.2 59 0.0013 24.0 3.8 51 32-89 10-62 (117)
69 TIGR00824 EIIA-man PTS system, 34.8 1.5E+02 0.0033 22.0 5.9 47 22-75 41-91 (116)
70 PRK05205 bifunctional pyrimidi 34.5 39 0.00085 27.0 2.8 25 37-61 93-121 (176)
71 PF07021 MetW: Methionine bios 33.9 2.4E+02 0.0052 23.5 7.4 95 33-147 7-110 (193)
72 PF02824 TGS: TGS domain; Int 33.7 31 0.00068 22.8 1.8 25 37-61 5-29 (60)
73 PF13738 Pyr_redox_3: Pyridine 32.6 48 0.001 26.0 3.0 36 36-76 164-199 (203)
74 PRK13512 coenzyme A disulfide 31.8 1.6E+02 0.0035 26.7 6.7 34 38-76 147-180 (438)
75 TIGR00150 HI0065_YjeE ATPase, 31.5 1.1E+02 0.0024 23.7 4.8 36 22-60 5-44 (133)
76 PF02558 ApbA: Ketopantoate re 31.0 1.9E+02 0.0042 21.6 6.1 44 43-92 2-45 (151)
77 PRK03659 glutathione-regulated 30.3 1.4E+02 0.003 28.7 6.2 49 39-92 400-448 (601)
78 TIGR01110 mdcA malonate decarb 29.4 82 0.0018 30.4 4.3 42 20-61 219-263 (543)
79 TIGR02053 MerA mercuric reduct 29.3 1.8E+02 0.004 26.4 6.6 33 39-76 166-198 (463)
80 COG2230 Cfa Cyclopropane fatty 28.5 1E+02 0.0022 27.2 4.6 57 17-83 52-111 (283)
81 COG0634 Hpt Hypoxanthine-guani 28.4 50 0.0011 27.3 2.4 37 34-74 88-128 (178)
82 cd02042 ParA ParA and ParB of 28.1 2.1E+02 0.0046 19.9 6.0 17 135-151 58-74 (104)
83 PRK06163 hypothetical protein; 28.1 70 0.0015 26.4 3.3 36 16-51 5-40 (202)
84 PRK14694 putative mercuric red 27.9 1.7E+02 0.0037 26.8 6.2 33 39-76 178-210 (468)
85 PF02367 UPF0079: Uncharacteri 27.7 54 0.0012 25.2 2.4 29 30-60 5-37 (123)
86 PRK05249 soluble pyridine nucl 27.3 2.1E+02 0.0046 25.9 6.7 33 39-76 175-207 (461)
87 PRK13940 glutamyl-tRNA reducta 26.4 2.3E+02 0.0051 26.1 6.7 68 37-108 179-252 (414)
88 COG0378 HypB Ni2+-binding GTPa 26.2 1.1E+02 0.0024 25.8 4.1 41 46-92 23-69 (202)
89 TIGR01438 TGR thioredoxin and 25.9 2.4E+02 0.0052 26.2 6.8 34 38-76 179-212 (484)
90 PF00732 GMC_oxred_N: GMC oxid 25.4 61 0.0013 27.3 2.6 21 41-61 2-22 (296)
91 PRK10834 vancomycin high tempe 25.3 2.9E+02 0.0062 23.8 6.6 62 29-93 102-167 (239)
92 PF00156 Pribosyltran: Phospho 24.8 77 0.0017 22.9 2.7 17 45-61 98-114 (125)
93 PRK06327 dihydrolipoamide dehy 24.4 2E+02 0.0044 26.4 6.0 33 39-76 183-215 (475)
94 PRK05476 S-adenosyl-L-homocyst 23.9 5.3E+02 0.012 24.0 8.6 139 35-178 207-371 (425)
95 TIGR02429 pcaI_scoA_fam 3-oxoa 23.5 85 0.0018 26.5 3.0 45 97-148 150-194 (222)
96 PF02639 DUF188: Uncharacteriz 23.4 1.8E+02 0.0039 22.5 4.6 49 39-95 28-78 (130)
97 PF04900 Fcf1: Fcf1; InterPro 23.4 2E+02 0.0044 20.6 4.8 42 47-95 50-93 (101)
98 TIGR02873 spore_ylxY probable 23.3 2.4E+02 0.0053 24.3 5.9 42 31-76 222-264 (268)
99 PRK06719 precorrin-2 dehydroge 23.3 3.7E+02 0.008 21.1 7.9 42 37-85 11-52 (157)
100 PRK13748 putative mercuric red 23.2 2.6E+02 0.0056 26.1 6.5 33 39-76 270-302 (561)
101 TIGR01421 gluta_reduc_1 glutat 23.2 2.7E+02 0.0057 25.5 6.5 33 39-76 166-198 (450)
102 PF01555 N6_N4_Mtase: DNA meth 23.1 87 0.0019 24.7 3.0 39 21-60 172-214 (231)
103 PRK12770 putative glutamate sy 23.0 2.7E+02 0.0059 24.3 6.3 50 39-92 172-229 (352)
104 PTZ00052 thioredoxin reductase 22.9 2.5E+02 0.0054 26.2 6.3 33 39-76 182-214 (499)
105 cd02009 TPP_SHCHC_synthase Thi 22.5 1.4E+02 0.003 23.6 4.0 30 31-60 8-37 (175)
106 PF02698 DUF218: DUF218 domain 22.4 1.8E+02 0.004 22.0 4.6 45 37-81 68-112 (155)
107 PF05991 NYN_YacP: YacP-like N 22.2 2.6E+02 0.0055 22.3 5.5 51 42-93 70-120 (166)
108 PRK07845 flavoprotein disulfid 22.1 2.6E+02 0.0057 25.6 6.3 33 39-76 177-209 (466)
109 PF02353 CMAS: Mycolic acid cy 21.9 1.1E+02 0.0025 26.4 3.6 40 36-83 59-101 (273)
110 PRK05976 dihydrolipoamide dehy 20.9 3.1E+02 0.0067 25.1 6.5 33 39-76 180-212 (472)
111 PRK07818 dihydrolipoamide dehy 20.6 3.5E+02 0.0076 24.7 6.7 33 38-75 171-203 (466)
112 PRK06115 dihydrolipoamide dehy 20.4 2.7E+02 0.0059 25.5 6.0 31 39-74 174-204 (466)
113 COG0794 GutQ Predicted sugar p 20.0 1.4E+02 0.003 25.1 3.6 40 34-78 81-124 (202)
No 1
>cd01398 RPI_A RPI_A: Ribose 5-phosphate isomerase type A (RPI_A) subfamily; RPI catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate, the first step of the non-oxidative branch of the pentose phosphate pathway. This reaction leads to the conversion of phosphosugars into glycolysis intermediates, which are precursors for the synthesis of amino acids, vitamins, nucleotides, and cell wall components. In plants, RPI is part of the Calvin cycle as ribulose 5-phosphate is the carbon dioxide receptor in the first dark reaction of photosynthesis. There are two unrelated types of RPIs (A and B), which catalyze the same reaction, at least one type of RPI is present in an organism. RPI_A is more widely distributed than RPI_B in bacteria, eukaryotes, and archaea.
Probab=100.00 E-value=7.2e-39 Score=268.07 Aligned_cols=158 Identities=32% Similarity=0.528 Sum_probs=139.6
Q ss_pred HHHHHHHHhhcCCCCCEEEECcCHHHHHHHHHHHhHhhcCCCCCeEEEcCcHHHHHHHHHCCCcEEEcCCCCcccEEEec
Q 029472 26 FRAAKHTVDTYITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLDQYRDTSQIDFAFDD 105 (193)
Q Consensus 26 k~iaa~~A~~~I~dg~tI~LdsGsT~~~la~~L~~~~~~~~~~~lTVVTnSl~ia~~l~~~~i~v~~l~~~~~~D~af~g 105 (193)
|+++|++|+++|++||+||||+|||+.+++++|+++.+.+ ..++||||||+.++.++...+++++.+++.+++|+||+|
T Consensus 2 K~~IA~~A~~~I~~g~~I~ldsGST~~~l~~~L~~~~~~~-~~~itvVTnS~~~a~~l~~~~i~vi~lg~~~~~D~af~G 80 (213)
T cd01398 2 KRAAARAAVDYVEDGMVIGLGTGSTVAYFIEALGERVREE-GLNIVGVPTSFQTEELARELGIPLTDLDEVPRLDLAIDG 80 (213)
T ss_pred HHHHHHHHHHhCCCCCEEEECchHHHHHHHHHHHHhhhcc-CCCEEEEeCcHHHHHHHHhCCCeEEeCCCccccCEEEEC
Confidence 4455699999999999999999999999999998652211 137999999999999887789999999876699999999
Q ss_pred cccccCCCcceecCCCCCCcchhHHHHHHHHHhcCeEEEEEeCCCccCCCC-CcccEEEecCCHHHHHHHHHhhcCCCce
Q 029472 106 ADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVSENQYKGVLD-GSVPVLVQPVNWMETAEEIDDLFIGDAE 184 (193)
Q Consensus 106 adgvd~~~~~~i~g~g~~~~~ea~~k~k~i~~~S~~~ilLaD~SKf~~~l~-~~~pvEv~p~~~~~~~~~l~~~~~g~~~ 184 (193)
||++|+ ++++++++++ +.++|++++++|+++|+|+|||||+++|| +|+||||.|++|++++++|+++ |+.+
T Consensus 81 ad~id~-~~~~~~~~~~-----a~~kek~i~~~a~~~illaD~sK~~~~l~~~~lPvEV~p~~~~~v~~~l~~~--g~~~ 152 (213)
T cd01398 81 ADEVDP-DLNLIKGGGG-----ALLREKIVASAAKKFIVIADESKLVERLGEFPLPVEVVPFAWSYVARELEKL--GGKP 152 (213)
T ss_pred CCcCCC-CcCcccChHH-----HHHHHHHHHHhcCeEEEEEecchhcccCCCCCeeEEEChhhHHHHHHHHHHc--CCCc
Confidence 999999 5777776666 99999998788999999999999999998 8999999999999999999997 9999
Q ss_pred eEeCCCCC
Q 029472 185 VFSIPYNR 192 (193)
Q Consensus 185 ~~R~~~~~ 192 (193)
+||++.+|
T Consensus 153 ~~R~~~~~ 160 (213)
T cd01398 153 VLREGSGK 160 (213)
T ss_pred EEcccCCC
Confidence 99997643
No 2
>PRK00702 ribose-5-phosphate isomerase A; Provisional
Probab=100.00 E-value=6.8e-39 Score=269.57 Aligned_cols=156 Identities=33% Similarity=0.511 Sum_probs=141.4
Q ss_pred HHHHHHHHHHhhcCCCCCEEEECcCHHHHHHHHHHHhHhhcCCCCCeEEEcCcHHHHHHHHHCCCcEEEcCCCCcccEEE
Q 029472 24 VLFRAAKHTVDTYITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLDQYRDTSQIDFAF 103 (193)
Q Consensus 24 ekk~iaa~~A~~~I~dg~tI~LdsGsT~~~la~~L~~~~~~~~~~~lTVVTnSl~ia~~l~~~~i~v~~l~~~~~~D~af 103 (193)
+.|+.+|++|++||++||+||||+|||+.+++++|+++.+++ + ++|+||||+.++.+|...+++++.+.++.++|+||
T Consensus 5 ~~K~~IA~~Aa~lI~dg~~IgLgsGST~~~l~~~L~~~~~~~-~-~itvVt~S~~~a~~l~~~gi~v~~l~~~~~iD~af 82 (220)
T PRK00702 5 ELKKAAAEAAAEYVEDGMIVGLGTGSTAAYFIDALGERVKEG-L-IIGGVPTSEASTELAKELGIPLFDLNEVDSLDLYV 82 (220)
T ss_pred HHHHHHHHHHHHhCCCCCEEEECCcHHHHHHHHHHHhhhccC-C-CEEEECCcHHHHHHHHhCCCeEEcHHHCCccCEEE
Confidence 445556699999999999999999999999999998652222 2 69999999999999988899999998876999999
Q ss_pred eccccccCCCcceecCCCCCCcchhHHHHHHHHHhcCeEEEEEeCCCccCCCC-CcccEEEecCCHHHHHHHHHhhcCCC
Q 029472 104 DDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVSENQYKGVLD-GSVPVLVQPVNWMETAEEIDDLFIGD 182 (193)
Q Consensus 104 ~gadgvd~~~~~~i~g~g~~~~~ea~~k~k~i~~~S~~~ilLaD~SKf~~~l~-~~~pvEv~p~~~~~~~~~l~~~~~g~ 182 (193)
+|||+||+ +++++||+|+ ++++||+++++|+++|+|+|+|||+.+|| .|+||||.|++|+++.++|+++ |.
T Consensus 83 dGaD~vd~-~~~~ikg~g~-----a~~~ekiva~~A~~~vil~D~sK~v~~lg~~~lPvEV~p~~~~~v~~~l~~~--g~ 154 (220)
T PRK00702 83 DGADEIDP-HLNLIKGGGA-----ALTREKIVAAAAKRFICIVDESKLVDVLGKFPLPVEVIPFARSAVARELEKL--GG 154 (220)
T ss_pred ECCCeECC-CCCcEECcHH-----HHHHHHHHHHhcCcEEEEEEcchhhhhcCCCCccEEECccHHHHHHHHHHHh--CC
Confidence 99999999 6999999888 99999999999999999999999999998 6899999999999999999997 88
Q ss_pred ceeEeCC
Q 029472 183 AEVFSIP 189 (193)
Q Consensus 183 ~~~~R~~ 189 (193)
.+.||+.
T Consensus 155 ~~~~R~~ 161 (220)
T PRK00702 155 QPELRMD 161 (220)
T ss_pred cceEeCC
Confidence 9999963
No 3
>PLN02384 ribose-5-phosphate isomerase
Probab=100.00 E-value=2.3e-38 Score=271.40 Aligned_cols=175 Identities=34% Similarity=0.541 Sum_probs=154.4
Q ss_pred cccccCCCcchhhhccCChHHHHHHHHHHHhhcCCCCCEEEECcCHHHHHHHHHHHhHhhcCCCCCeEEEcCcHHHHHHH
Q 029472 4 TMIRGSSSSDSSRALSNGSSVLFRAAKHTVDTYITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEA 83 (193)
Q Consensus 4 ~~~~~~~~~~~~~~~s~~~~ekk~iaa~~A~~~I~dg~tI~LdsGsT~~~la~~L~~~~~~~~~~~lTVVTnSl~ia~~l 83 (193)
.|+.||||-.. + .++.|+.+|++|++||++||+|+||+|||+.+++++|.++.+.+.++++++||+|..++.++
T Consensus 20 ~~~~~~~~~~m----~--~~~~K~~aA~~A~~~V~~gmvVGLGTGSTv~~~I~~La~r~~~~~l~~I~~VpTS~~T~~~a 93 (264)
T PLN02384 20 SMLSPSSPVIL----T--QDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLKNIIGIPTSKKTHEQA 93 (264)
T ss_pred CcCCCCCCCCC----C--HHHHHHHHHHHHHHhccCCCEEEecchHHHHHHHHHHHHhhhhccccceEEEcCcHHHHHHH
Confidence 47778877433 1 23345566699999999999999999999999999999876545455799999999999999
Q ss_pred HHCCCcEEEcCCCCcccEEEeccccccCCCcceecCCCCCCcchhHHHHHHHHHhcCeEEEEEeCCCccCCCCC---ccc
Q 029472 84 AVAGIPLDQYRDTSQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVSENQYKGVLDG---SVP 160 (193)
Q Consensus 84 ~~~~i~v~~l~~~~~~D~af~gadgvd~~~~~~i~g~g~~~~~ea~~k~k~i~~~S~~~ilLaD~SKf~~~l~~---~~p 160 (193)
.+.|+++..+.+..++|+||+|||.||+ +++++||||+ ++++||+++++|+++|+|+|+||++++||. ++|
T Consensus 94 ~~~GIpl~~l~~v~~iDiaiDGADEId~-~lnlIKGGGg-----allrEKivA~~A~~~IiI~DesK~V~~Lg~~~~plP 167 (264)
T PLN02384 94 VSLGIPLSDLDSHPVVDLAIDGADEVDP-NLNLVKGRGG-----SLLREKMIEGACKKFVVIVDESKLVKHIGGSGLAMP 167 (264)
T ss_pred HHcCCcEeccccCCcccEEEECCceeCC-CCCEEEeCcH-----HHHHHHHHHHhcCeEEEEEeCcceecccCCCCCCEE
Confidence 9999999999988899999999999999 7999999999 999999999999999999999999999973 799
Q ss_pred EEEecCCHHHHHHHHHhhcC--CCceeEeCCC
Q 029472 161 VLVQPVNWMETAEEIDDLFI--GDAEVFSIPY 190 (193)
Q Consensus 161 vEv~p~~~~~~~~~l~~~~~--g~~~~~R~~~ 190 (193)
|||+|++|+++.++|+++|. |..+.||+..
T Consensus 168 VEV~p~a~~~v~~~L~~l~~~~g~~~~lR~~~ 199 (264)
T PLN02384 168 VEVVPFCWKFTAEKLQSLFEYAGCVAKLRTKN 199 (264)
T ss_pred EEECccHHHHHHHHHHHHhhccCCceEEeccC
Confidence 99999999999999999763 6788999753
No 4
>TIGR00021 rpiA ribose 5-phosphate isomerase. This model describes ribose 5-phosphate isomerase, an enzyme of the non-oxidative branch of the pentose phosphate pathway.
Probab=100.00 E-value=1.5e-38 Score=267.21 Aligned_cols=155 Identities=32% Similarity=0.564 Sum_probs=140.6
Q ss_pred HHHHHHHHhhcCCCCCEEEECcCHHHHHHHHHHHhHhhcCCCCCeEEEcCcHHHHHHHHHCCCcEEEcCCCCcccEEEec
Q 029472 26 FRAAKHTVDTYITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLDQYRDTSQIDFAFDD 105 (193)
Q Consensus 26 k~iaa~~A~~~I~dg~tI~LdsGsT~~~la~~L~~~~~~~~~~~lTVVTnSl~ia~~l~~~~i~v~~l~~~~~~D~af~g 105 (193)
|+.+|++|+++|++|++||||+|||+.+++++|+++.+.+.+ ++|+||||+.++.+|...|++++.+.++.++|+||+|
T Consensus 2 K~~IA~~A~~~I~~g~~I~ldsGST~~~~~~~L~~~~~~~~l-~itvVt~S~~~a~~l~~~gi~v~~l~~~~~iDiafdG 80 (218)
T TIGR00021 2 KRAAAEAAAEYVEDGMVVGLGTGSTVAYFIEALGERVKQEGL-DIVGVPTSKQTAELARELGIPLSSLDEVPELDLAIDG 80 (218)
T ss_pred HHHHHHHHHHhCCCCCEEEECCcHHHHHHHHHHHHhhhccCC-CEEEEeCCHHHHHHHHHCCCCEEcHhHCCccCEEEEC
Confidence 344569999999999999999999999999999875322333 7999999999999998889999999887699999999
Q ss_pred cccccCCCcceecCCCCCCcchhHHHHHHHHHhcCeEEEEEeCCCccCCCC-CcccEEEecCCHHHHHHHHHhhcCCCce
Q 029472 106 ADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVSENQYKGVLD-GSVPVLVQPVNWMETAEEIDDLFIGDAE 184 (193)
Q Consensus 106 adgvd~~~~~~i~g~g~~~~~ea~~k~k~i~~~S~~~ilLaD~SKf~~~l~-~~~pvEv~p~~~~~~~~~l~~~~~g~~~ 184 (193)
||+||+ +++++||+|+ ++++||+++++|+++|+|+|+|||+++|| .|+||||.|++|.+++++|+++ |..+
T Consensus 81 aD~id~-~~~~ikg~g~-----a~~~eKiia~~A~~~i~l~D~sK~~~~lg~~plPvEV~p~~~~~v~~~l~~~--g~~~ 152 (218)
T TIGR00021 81 ADEVDP-NLQLIKGGGG-----ALLREKIVASASKRFIVIADESKLVDKLGKFPLPVEVVPFAWKAVARKLEKL--GGEP 152 (218)
T ss_pred CCeECC-CCCEecccHH-----HHHHHHHHHHhhCcEEEEEEchhhhcccCCCCccEEECccHHHHHHHHHHHc--CCCc
Confidence 999999 6999999998 99999999889999999999999999997 6899999999999999999996 8899
Q ss_pred eEeCC
Q 029472 185 VFSIP 189 (193)
Q Consensus 185 ~~R~~ 189 (193)
.+|++
T Consensus 153 ~~R~~ 157 (218)
T TIGR00021 153 TLRQG 157 (218)
T ss_pred EEeec
Confidence 99974
No 5
>PRK13978 ribose-5-phosphate isomerase A; Provisional
Probab=100.00 E-value=6.6e-37 Score=258.16 Aligned_cols=158 Identities=24% Similarity=0.355 Sum_probs=143.7
Q ss_pred HHHHHHHHHHhhcCCCCCEEEECcCHHHHHHHHHHHhHhhcCCCCCeEEEcCcHHHHHHHHHCCCcEEEcCCCCcccEEE
Q 029472 24 VLFRAAKHTVDTYITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLDQYRDTSQIDFAF 103 (193)
Q Consensus 24 ekk~iaa~~A~~~I~dg~tI~LdsGsT~~~la~~L~~~~~~~~~~~lTVVTnSl~ia~~l~~~~i~v~~l~~~~~~D~af 103 (193)
+.|+.+|++|++||++||+|+||+|||+.+++++|.++.+.+.+ ++++|+.|..++.++.+.|+++..+.+..++|+||
T Consensus 6 ~~K~~aa~~A~~~V~~gmvvGLGTGSTv~~~i~~L~~~~~~~~l-~i~~VptS~~t~~~a~~~Gipl~~l~~~~~iDiai 84 (228)
T PRK13978 6 ALKLMTLNDVLSQINGDMTLGIGTGSTMELLLPQMAQLIKERGY-NITGVCTSNKIAFLAKELGIKICEINDVDHIDLAI 84 (228)
T ss_pred HHHHHHHHHHHHhCCCCCEEEeCchHHHHHHHHHHHHHhhccCc-cEEEEeCcHHHHHHHHHcCCcEechhhCCceeEEE
Confidence 34566779999999999999999999999999999987654445 69999999999999999999999999888999999
Q ss_pred eccccccCCCcceecCCCCCCcchhHHHHHHHHHhcCeEEEEEeCCCccCCCC--CcccEEEecCCHHHHHHHHHhhcCC
Q 029472 104 DDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVSENQYKGVLD--GSVPVLVQPVNWMETAEEIDDLFIG 181 (193)
Q Consensus 104 ~gadgvd~~~~~~i~g~g~~~~~ea~~k~k~i~~~S~~~ilLaD~SKf~~~l~--~~~pvEv~p~~~~~~~~~l~~~~~g 181 (193)
+|||.||+ +++++||||+ ++++||+++++|+++|+|+|+||++++|| .++||||.|++|+++.++|+++ |
T Consensus 85 DGADevd~-~lnlIKGgGg-----al~rEKiva~~A~~~iii~D~sK~v~~Lg~~~plPVEV~p~~~~~v~~~l~~l--g 156 (228)
T PRK13978 85 DGADEVDP-SLNIIKGGGG-----ALFREKVIDEMASRFVVVVDETKIVQYLGETFKLPVEVDKFNWYHILRKIESY--A 156 (228)
T ss_pred ecCceecC-CccEEecCcH-----HHHHHHHHHHhcCcEEEEEeCcceecccCCCCCeEEEEcccHHHHHHHHHHHc--C
Confidence 99999999 7999999999 99999999999999999999999999998 5899999999999999999986 6
Q ss_pred C-ceeEeCCC
Q 029472 182 D-AEVFSIPY 190 (193)
Q Consensus 182 ~-~~~~R~~~ 190 (193)
+ .+.+|...
T Consensus 157 ~~~~~~R~~~ 166 (228)
T PRK13978 157 DIKVERRVNE 166 (228)
T ss_pred CCCcEEEecC
Confidence 4 67777543
No 6
>COG0120 RpiA Ribose 5-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.5e-36 Score=254.66 Aligned_cols=160 Identities=30% Similarity=0.506 Sum_probs=146.6
Q ss_pred HHHHHHHHHHHhhcCCCCCEEEECcCHHHHHHHHHHHhHhhcCCCCCeEEEcCcHHHHHHHHHCCCcEEEcCCCCcccEE
Q 029472 23 SVLFRAAKHTVDTYITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLDQYRDTSQIDFA 102 (193)
Q Consensus 23 ~ekk~iaa~~A~~~I~dg~tI~LdsGsT~~~la~~L~~~~~~~~~~~lTVVTnSl~ia~~l~~~~i~v~~l~~~~~~D~a 102 (193)
++.|+++|++|+++|++|++|+||+|||+.+++++|.++.+ +. .+++.||+|..++.+|.+.|+++..+..+.++|+|
T Consensus 4 ~~~K~~aa~~A~~~v~~gmviGlGTGST~~~fI~~Lg~~~~-~e-~~i~~V~TS~~t~~l~~~~GI~v~~l~~~~~lDl~ 81 (227)
T COG0120 4 DELKKAAAKAALEYVKDGMVIGLGTGSTAAYFIEALGRRVK-GE-LDIGGVPTSFQTEELARELGIPVSSLNEVDSLDLA 81 (227)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEcCcHHHHHHHHHHHHhhc-cC-ccEEEEeCCHHHHHHHHHcCCeecCccccCccceE
Confidence 45666677999999999999999999999999999986422 22 27999999999999999999999999998789999
Q ss_pred EeccccccCCCcceecCCCCCCcchhHHHHHHHHHhcCeEEEEEeCCCccCCCC-CcccEEEecCCHHHHHHHHHhhcCC
Q 029472 103 FDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVSENQYKGVLD-GSVPVLVQPVNWMETAEEIDDLFIG 181 (193)
Q Consensus 103 f~gadgvd~~~~~~i~g~g~~~~~ea~~k~k~i~~~S~~~ilLaD~SKf~~~l~-~~~pvEv~p~~~~~~~~~l~~~~~g 181 (193)
|||||.||+ ++++|||||+ |+++||+++.+|+++|+++|+||++++|| +|+||||.|++|.+|.++++++ |
T Consensus 82 iDGADEvd~-~~~lIKGGGg-----Al~rEKIva~~ak~~IvIvDesKlV~~LG~fplPVEVip~a~~~v~r~l~~~--g 153 (227)
T COG0120 82 IDGADEVDP-NLNLIKGGGG-----ALLREKIVASAAKRFIVIVDESKLVEVLGKFPLPVEVIPFARSAVLRKLEKL--G 153 (227)
T ss_pred eecccccCC-CCCEEccChH-----HHHHHHHHHHhcCeEEEEEeCccchhhcCCCCcCEEEchhHHHHHHHHHHHh--C
Confidence 999999999 6999999999 99999999999999999999999999999 7899999999999999999887 9
Q ss_pred CceeEeCCCCC
Q 029472 182 DAEVFSIPYNR 192 (193)
Q Consensus 182 ~~~~~R~~~~~ 192 (193)
..+.||++.+|
T Consensus 154 ~~~~lR~~~~k 164 (227)
T COG0120 154 GKPTLREGEGK 164 (227)
T ss_pred CCccccccccC
Confidence 99999986443
No 7
>PF00455 DeoRC: DeoR C terminal sensor domain; InterPro: IPR014036 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after Escherichia coli deoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerization domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].
Probab=99.96 E-value=1.4e-28 Score=197.50 Aligned_cols=121 Identities=17% Similarity=0.215 Sum_probs=100.5
Q ss_pred ChHHHHHHHHHHHhhcCCCCCEEEECcCHHHHHHHHHHHhHhhcCCCCCeEEEcCcHHHHHHHHHC-CCcEEEcCC----
Q 029472 21 GSSVLFRAAKHTVDTYITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVA-GIPLDQYRD---- 95 (193)
Q Consensus 21 ~~~ekk~iaa~~A~~~I~dg~tI~LdsGsT~~~la~~L~~~~~~~~~~~lTVVTnSl~ia~~l~~~-~i~v~~l~~---- 95 (193)
|.++|+++| ++|+++|+|||+||||+|||+++++++|+++ +++||||||++++.+|... +++++.+++
T Consensus 2 n~~~K~~IA-~~A~~~I~~~~~Ifld~GtT~~~la~~L~~~------~~ltVvTnsl~ia~~l~~~~~~~vi~~GG~~~~ 74 (161)
T PF00455_consen 2 NAEEKRAIA-RKAASLIEDGDTIFLDSGTTTLELAKYLPDK------KNLTVVTNSLPIANELSENPNIEVILLGGEVNP 74 (161)
T ss_pred CHHHHHHHH-HHHHHhCCCCCEEEEECchHHHHHHHHhhcC------CceEEEECCHHHHHHHHhcCceEEEEeCCEEEc
Confidence 455666665 9999999999999999999999999999874 4899999999999999765 688887542
Q ss_pred ---------------CCcccEEEeccccccCCCcceecCCCCCCcchhHHHHHHHHHhcCeEEEEEeCCCccCC
Q 029472 96 ---------------TSQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVSENQYKGV 154 (193)
Q Consensus 96 ---------------~~~~D~af~gadgvd~~~~~~i~g~g~~~~~ea~~k~k~i~~~S~~~ilLaD~SKf~~~ 154 (193)
-+++|++|+||+|+++ +.|+. .++.+++.+++.| +++|+++|+|+|||||++.
T Consensus 75 ~~~~~~G~~a~~~l~~~~~d~afi~~~gi~~-~~G~~----~~~~~~a~vk~~~-~~~s~~~ill~D~sKf~~~ 142 (161)
T PF00455_consen 75 KSLSFVGPIALEALRQFRFDKAFIGADGISE-EGGLT----TSDEEEAEVKRAM-IENSKQVILLADSSKFGRN 142 (161)
T ss_pred CCCcEECchHHHHHHhhccceEEecccEecC-CCccc----cchHHHHHHHHHH-HHhcCeEEEEeChhhcCCe
Confidence 0389999999999999 45432 1456888998666 5999999999999999764
No 8
>KOG3075 consensus Ribose 5-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=99.95 E-value=1.4e-27 Score=202.23 Aligned_cols=170 Identities=34% Similarity=0.539 Sum_probs=149.0
Q ss_pred hccCChHHHHHHHHHHHhhcCCCCCEEEECcCHHHHHHHHHHHhHhhcCCCCCeEEEcCcHHHHHHHHHCCCcEEEcCCC
Q 029472 17 ALSNGSSVLFRAAKHTVDTYITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLDQYRDT 96 (193)
Q Consensus 17 ~~s~~~~ekk~iaa~~A~~~I~dg~tI~LdsGsT~~~la~~L~~~~~~~~~~~lTVVTnSl~ia~~l~~~~i~v~~l~~~ 96 (193)
.++...+.||+++-+..-.++++|++||||+|+|+.+.+++|.+....+.+.+++.|+.|...++++.+.||++..++.+
T Consensus 20 ~~~~~e~~kr~Aa~~avd~~~k~g~ViGiGsGstv~~~v~~i~q~l~~~~l~~vvgVPts~~s~q~~~~~gi~l~~~d~h 99 (261)
T KOG3075|consen 20 SLSPQEEAKRLAAYKAVDNYVKNGMVIGIGSGSTVVYAVDRIGQLLFDGDLGNVVGVPTSFRSAQLALEYGIPLSDLDSH 99 (261)
T ss_pred ccCchHHHHHHHHhhhhhhhccCCeEEEecCccHHHHHHHHHHHHhcCCCcCceEecccchhhHHHHHhcCCccccCCCC
Confidence 35666677777764555567777999999999999999999987655565678999999999999999999999999988
Q ss_pred CcccEEEeccccccCCCcceecCCCCCCcchhHHHHHHHHHhcCeEEEEEeCCCccCCCCC----cccEEEecCCHHHHH
Q 029472 97 SQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVSENQYKGVLDG----SVPVLVQPVNWMETA 172 (193)
Q Consensus 97 ~~~D~af~gadgvd~~~~~~i~g~g~~~~~ea~~k~k~i~~~S~~~ilLaD~SKf~~~l~~----~~pvEv~p~~~~~~~ 172 (193)
..+|++|+|||++|+ +++++||+|+ ++.+||++.-.|+++|++||+.|+.+.||. .+||||+|++|..+.
T Consensus 100 p~iDlaidgADEvd~-nln~ikggGg-----~l~qEk~v~~~akkfiviad~~k~~~~lg~~~~~gvPvEvvpl~~~~l~ 173 (261)
T KOG3075|consen 100 PVIDLAIDGADEVDE-NLNLIKGGGG-----CLLQEKDVEGAAKKFIVIADSRKGSKGLGGSGKQGVPVEVVPLAWLKLL 173 (261)
T ss_pred ceeEEEecCchhhCc-CcceEEeccc-----hhhHHHHHHHhhhceEEEeeccccchhhcccccCceeeeehhhHHHHHH
Confidence 899999999999999 8999999999 999999999999999999999999988863 399999999999999
Q ss_pred HHHHhhcCCCceeEeC-CCCC
Q 029472 173 EEIDDLFIGDAEVFSI-PYNR 192 (193)
Q Consensus 173 ~~l~~~~~g~~~~~R~-~~~~ 192 (193)
+.|.++-.|+.+.||+ +.+|
T Consensus 174 ~~l~~~~~g~~~~lR~g~~~k 194 (261)
T KOG3075|consen 174 ENLSEFSFGCEAKLRMGAEGK 194 (261)
T ss_pred Hhhhhhhccchheeccccccc
Confidence 9999933599999994 4443
No 9
>PRK10681 DNA-binding transcriptional repressor DeoR; Provisional
Probab=99.95 E-value=2.8e-27 Score=202.11 Aligned_cols=151 Identities=15% Similarity=0.030 Sum_probs=115.5
Q ss_pred hhhccCChHHHHHHHHHHHhhcCCCCCEEEECcCHHHHHHHHHHHhHhhcCCCCCeEEEcCcHHHHHHHHH-CCCcEEEc
Q 029472 15 SRALSNGSSVLFRAAKHTVDTYITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAV-AGIPLDQY 93 (193)
Q Consensus 15 ~~~~s~~~~ekk~iaa~~A~~~I~dg~tI~LdsGsT~~~la~~L~~~~~~~~~~~lTVVTnSl~ia~~l~~-~~i~v~~l 93 (193)
..+...+.++|++++ ++|+++|+|||+||||+|||++++|++|++. +++||||||++++.+|.. .+++++.+
T Consensus 69 ~~r~~~~~~~K~~IA-~~Aa~lI~~g~tIflD~GtT~~~la~~L~~~------~~ltvvTnsl~i~~~l~~~~~~~vill 141 (252)
T PRK10681 69 SDQKSRLVEEKRRAA-QLAATLVEPNQTLFFDCGTTTPWIIEAIDNE------LPFTAVCYSLNTFLALQEKPHCRAILC 141 (252)
T ss_pred HHHHHhCHHHHHHHH-HHHHhhcCCCCEEEEECCccHHHHHHhcCCC------CCeEEEECCHHHHHHHhhCCCCEEEEE
Confidence 446666767766655 9999999999999999999999999999863 379999999999998865 56888765
Q ss_pred CCC-------------------CcccEEEeccccccCCCcceecCCCCCCcchhHHHHHHHHHhcCeEEEEEeCCCccCC
Q 029472 94 RDT-------------------SQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVSENQYKGV 154 (193)
Q Consensus 94 ~~~-------------------~~~D~af~gadgvd~~~~~~i~g~g~~~~~ea~~k~k~i~~~S~~~ilLaD~SKf~~~ 154 (193)
++. +++|+||+||+|+|++ .|+. .++.+++.+++.| +++|+++|+|||||||++.
T Consensus 142 GG~~~~~~~~~~G~~~~~~l~~~~~D~afig~~gi~~~-~G~~----~~~~~ea~vk~~~-~~~a~~~illaD~sKf~~~ 215 (252)
T PRK10681 142 GGEFHASNAIFKPLDFQQTLDNICPDIAFYSAAGVHVS-KGAT----CFNLEELPVKHWA-MAMAQKHVLVVDHSKFGKV 215 (252)
T ss_pred CcEEecCcceeeCHHHHHHHHhhCCCEEEEeCceecCC-CCcC----CCCHHHHHHHHHH-HHhhCcEEEEEcccccCce
Confidence 421 3899999999999984 4321 1456889998666 5999999999999999973
Q ss_pred C----CC--cccEEEecCCH-HHHHHHHHhh
Q 029472 155 L----DG--SVPVLVQPVNW-METAEEIDDL 178 (193)
Q Consensus 155 l----~~--~~pvEv~p~~~-~~~~~~l~~~ 178 (193)
- +. .+..-|..... ..+.+.+.+.
T Consensus 216 ~~~~~~~l~~id~lITD~~~~~~~~~~~~~~ 246 (252)
T PRK10681 216 RPARMGDLTRFDTVVSDRCPDDEFVKYAQAQ 246 (252)
T ss_pred eeeEeeCHHHCCEEEeCCCCCHHHHHHHHHc
Confidence 2 21 25555655433 3566677664
No 10
>PRK10906 DNA-binding transcriptional repressor GlpR; Provisional
Probab=99.95 E-value=4.7e-27 Score=200.96 Aligned_cols=151 Identities=11% Similarity=0.071 Sum_probs=114.3
Q ss_pred hhhccCChHHHHHHHHHHHhhcCCCCCEEEECcCHHHHHHHHHHHhHhhcCCCCCeEEEcCcHHHHHHHH-HCCCcEEEc
Q 029472 15 SRALSNGSSVLFRAAKHTVDTYITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAA-VAGIPLDQY 93 (193)
Q Consensus 15 ~~~~s~~~~ekk~iaa~~A~~~I~dg~tI~LdsGsT~~~la~~L~~~~~~~~~~~lTVVTnSl~ia~~l~-~~~i~v~~l 93 (193)
..+...+.++|+++| ++|+++|+|||+||||+|||+++++++|++. +++||||||+.++..|. .++++++.+
T Consensus 68 ~~r~~~~~~~K~~IA-~~Aa~~I~~g~tIflD~GtT~~~la~~L~~~------~~ltVvTNsl~ia~~l~~~~~~~vill 140 (252)
T PRK10906 68 HDRKATQTEEKERIA-RKVASQIPNGATLFIDIGTTPEAVAHALLNH------SNLRIVTNNLNVANTLMAKEDFRIILA 140 (252)
T ss_pred HHHhhhcHHHHHHHH-HHHHhhCCCCCEEEEcCcHHHHHHHHHhcCC------CCcEEEECcHHHHHHHhhCCCCEEEEE
Confidence 345566666666655 9999999999999999999999999999763 37999999999999886 467888876
Q ss_pred CCC-------------------CcccEEEeccccccCCCcceecCCCCCCcchhHHHHHHHHHhcCeEEEEEeCCCccCC
Q 029472 94 RDT-------------------SQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVSENQYKGV 154 (193)
Q Consensus 94 ~~~-------------------~~~D~af~gadgvd~~~~~~i~g~g~~~~~ea~~k~k~i~~~S~~~ilLaD~SKf~~~ 154 (193)
++. +++|+||+||+|||+ ++|+. .++.+++.++++|+ ++|+++|+|||||||++.
T Consensus 141 GG~~~~~~~~~~G~~a~~~l~~~~~d~afi~~~Gi~~-~~G~t----~~~~~ea~~k~~~~-~~a~~~illaD~sKf~~~ 214 (252)
T PRK10906 141 GGELRSRDGGIIGEATLDFISQFRLDFGILGISGIDS-DGSLL----EFDYHEVRTKRAII-ENSRHVMLVVDHSKFGRN 214 (252)
T ss_pred CCEEecCCCccCCHHHHHHHHhccCCEEEEcCCEECC-CCCcC----CCCHHHHHHHHHHH-HhcCcEEEEEccchhCCc
Confidence 421 389999999999998 44331 14568899986665 999999999999999974
Q ss_pred C-CCc-----ccEEEecCC-HHHHHHHHHhh
Q 029472 155 L-DGS-----VPVLVQPVN-WMETAEEIDDL 178 (193)
Q Consensus 155 l-~~~-----~pvEv~p~~-~~~~~~~l~~~ 178 (193)
- ... +..-|.-.. -..+.+.|.+.
T Consensus 215 ~~~~~~~l~~id~iITD~~~~~~~~~~~~~~ 245 (252)
T PRK10906 215 AMVNMGSISMVDAVYTDQLPPASVMQVIEDH 245 (252)
T ss_pred ceeEecCHHHCCEEEECCCCCHHHHHHHHHC
Confidence 3 222 444444222 23466777664
No 11
>PRK09802 DNA-binding transcriptional regulator AgaR; Provisional
Probab=99.94 E-value=8.3e-27 Score=201.15 Aligned_cols=155 Identities=15% Similarity=0.213 Sum_probs=118.3
Q ss_pred hhhhccCChHHHHHHHHHHHhhcCCCCCEEEECcCHHHHHHHHHHHhHhhcCCCCCeEEEcCcHHHHHHHHH-CCCcEEE
Q 029472 14 SSRALSNGSSVLFRAAKHTVDTYITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAV-AGIPLDQ 92 (193)
Q Consensus 14 ~~~~~s~~~~ekk~iaa~~A~~~I~dg~tI~LdsGsT~~~la~~L~~~~~~~~~~~lTVVTnSl~ia~~l~~-~~i~v~~ 92 (193)
.+.+...+.++|+++| ++|+++|+|||+||||+|||+++++++|++. +++||||||+.++..|.. .+++++.
T Consensus 82 ~~~r~~~~~~~K~~IA-~~Aa~~I~dgd~Ifld~GtT~~~la~~L~~~------~~ltVvTnsl~ia~~l~~~~~~~v~l 154 (269)
T PRK09802 82 VEDKSALNTAMKRSVA-KAAVELIQPGHRVILDSGTTTFEIARLMRKH------TDVIAMTNGMNVANALLEAEGVELLM 154 (269)
T ss_pred HHHHHHhCHHHHHHHH-HHHHhhCCCCCEEEECCchHHHHHHHhcCcC------CCeEEEeCCHHHHHHHHhCCCCEEEE
Confidence 3456666777776665 9999999999999999999999999999763 379999999999998864 5788887
Q ss_pred cCC-------------------CCcccEEEeccccccCCCcceecCCCCCCcchhHHHHHHHHHhcCeEEEEEeCCCccC
Q 029472 93 YRD-------------------TSQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVSENQYKG 153 (193)
Q Consensus 93 l~~-------------------~~~~D~af~gadgvd~~~~~~i~g~g~~~~~ea~~k~k~i~~~S~~~ilLaD~SKf~~ 153 (193)
+++ .+++|+||+||+||+. +.|+. .++.+++.+|+.|+ ++|+++|+|+|||||++
T Consensus 155 lGG~~~~~~~~~~G~~a~~~l~~~~~d~afig~~gi~~-~~G~t----~~~~~ea~~kr~~i-~~s~~~ill~D~sKf~~ 228 (269)
T PRK09802 155 TGGHLRRQSQSFYGDQAEQSLQNYHFDMLFLGVDAIDL-ERGVS----THNEDEARLNRRMC-EVAERIIVVTDSSKFNR 228 (269)
T ss_pred ECCEEecCCCceECHHHHHHHHhccCCEEEEcCceecC-CCCcC----CCCHHHHHHHHHHH-HHcCcEEEEEeccccCC
Confidence 542 1389999999999998 34331 14568899986665 99999999999999997
Q ss_pred CC-CC-----cccEEEecCCH-HHHHHHHHhhcCCCc
Q 029472 154 VL-DG-----SVPVLVQPVNW-METAEEIDDLFIGDA 183 (193)
Q Consensus 154 ~l-~~-----~~pvEv~p~~~-~~~~~~l~~~~~g~~ 183 (193)
.- .. .+.+-|.-... ..+.+.|.+. |..
T Consensus 229 ~~~~~~~~l~~id~iITD~~~~~~~~~~~~~~--~~~ 263 (269)
T PRK09802 229 SSLHKIIDTQRIDMIIVDEGIPADSLEGLRKA--GVE 263 (269)
T ss_pred cceEEecCHHHCCEEEECcCCCHHHHHHHHHC--CCE
Confidence 43 22 24555655433 3567778774 544
No 12
>PF06026 Rib_5-P_isom_A: Ribose 5-phosphate isomerase A (phosphoriboisomerase A); InterPro: IPR004788 Ribose 5-phosphate isomerase, also known as phosphoriboisomerase, catalyses the reversible conversion of D-ribose 5-phosphate to D-ribulose 5-phosphate, the first step in the non-oxidative branch of the pentose phosphate pathway []. This reaction enables ribose to be synthesized from sugars, as well as the recycling of sugars during the degradation of nucleotides. There are two unrelated types of ribose 5-phosphate isomerases: type A (RpiA) is the most common and is found in most organisms, while type B (RpiB) is restricted to specific eukaryotic and prokaryotic species. Escherichia coli produces both RpiA and RpiB (also known as AlsB), although RpiA accounts for 99% of total RPI enzymes []. This entry represents type A (RpiA) enzymes found in eukaryotes (plants, Metazoa and fungi), bacteria and archaea.; GO: 0004751 ribose-5-phosphate isomerase activity, 0009052 pentose-phosphate shunt, non-oxidative branch; PDB: 1M0S_B 3HHE_B 1LKZ_B 1KS2_A 1O8B_A 3UW1_A 3U7J_A 3L7O_A 1XTZ_A 1UJ6_A ....
Probab=99.94 E-value=9.9e-27 Score=189.34 Aligned_cols=114 Identities=30% Similarity=0.501 Sum_probs=98.5
Q ss_pred eEEEcCcHHHHHHHHHCCCcEEEcCCCCcccEEEeccccccCCCcceecCCCCCCcchhHHHHHHHHHhcCeEEEEEeCC
Q 029472 70 VIGIPTSVASANEAAVAGIPLDQYRDTSQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVSEN 149 (193)
Q Consensus 70 lTVVTnSl~ia~~l~~~~i~v~~l~~~~~~D~af~gadgvd~~~~~~i~g~g~~~~~ea~~k~k~i~~~S~~~ilLaD~S 149 (193)
+++||.|..++.++.+.|++++.+.+..++|++|+|||.||. +++++||||| ++++||+++++|+++|+++|++
T Consensus 1 I~~V~tS~~T~~~a~~~Gi~l~~~~~~~~iDl~iDGaDevd~-~l~lIKGgGg-----allrEKiva~~a~~~I~i~Des 74 (173)
T PF06026_consen 1 IVGVPTSEATELLARKLGIPLVDLDEVDRIDLAIDGADEVDP-DLNLIKGGGG-----ALLREKIVASAAKRFIIIVDES 74 (173)
T ss_dssp EEEEESSHHHHHHHHHTT-EBE-GGGSSSEEEEEEE-SEEET-TSEEE--TTS------HHHHHHHHHTEEEEEEEEEGG
T ss_pred CEEECChHHHHHHHHHcCCcEEccccCCcceEEEECchhhcC-CCCEEECCCc-----cchhhhhHHHhhceEEEEECCC
Confidence 578999999999999999999999887789999999999999 7999999999 9999999999999999999999
Q ss_pred CccCCCC-CcccEEEecCCHHHHHHHHHh-hcCCCceeEeCCCC
Q 029472 150 QYKGVLD-GSVPVLVQPVNWMETAEEIDD-LFIGDAEVFSIPYN 191 (193)
Q Consensus 150 Kf~~~l~-~~~pvEv~p~~~~~~~~~l~~-~~~g~~~~~R~~~~ 191 (193)
|++++|| .|+||||+|++|+++.++|++ + |..+.||+..+
T Consensus 75 K~v~~Lg~~plPvEV~p~a~~~v~~~l~~~~--G~~~~lR~~~~ 116 (173)
T PF06026_consen 75 KLVEKLGKFPLPVEVVPFAWSYVLRRLKELL--GGKPVLRMASG 116 (173)
T ss_dssp GBESSBTSS-EEEEE-GGGHHHHHHHHHHTT--T-EEEE-EETT
T ss_pred cEeeEcCCCceeEEEcHHHHHHHHHHHHHhc--CCCceEccCCC
Confidence 9999996 899999999999999999998 5 99999999653
No 13
>PRK10411 DNA-binding transcriptional activator FucR; Provisional
Probab=99.94 E-value=2.3e-26 Score=195.44 Aligned_cols=126 Identities=12% Similarity=0.104 Sum_probs=101.8
Q ss_pred hhhccCChHHHHHHHHHHHhhcCCCCCEEEECcCHHHHHHHHHHHhHhhcCCCCCeEEEcCcHHHHHHHH-HCCCcEEEc
Q 029472 15 SRALSNGSSVLFRAAKHTVDTYITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAA-VAGIPLDQY 93 (193)
Q Consensus 15 ~~~~s~~~~ekk~iaa~~A~~~I~dg~tI~LdsGsT~~~la~~L~~~~~~~~~~~lTVVTnSl~ia~~l~-~~~i~v~~l 93 (193)
+.+...+.++|+++ |++|+++|+|||+||||+|||+.+++++|+++ ++||||||+.+|..|. .++++++.+
T Consensus 70 ~~r~~~~~~~K~~I-A~~Aa~lI~~gd~Ifld~GtT~~~l~~~L~~~-------~ltVvTNs~~ia~~l~~~~~~~vil~ 141 (240)
T PRK10411 70 HIRLKSHYAHKADI-AREALAWIEEGMVIALDASSTCWYLARQLPDI-------NIQVFTNSHPICQELGKRERIQLISS 141 (240)
T ss_pred HHHHHhHHHHHHHH-HHHHHHhCCCCCEEEEcCcHHHHHHHHhhCCC-------CeEEEeCCHHHHHHHhcCCCCEEEEE
Confidence 34555666666555 59999999999999999999999999999752 7999999999999886 467888765
Q ss_pred CC-------------------CCcccEEEeccccccCCCcceecCCCCCCcchhHHHHHHHHHhcCeEEEEEeCCCccCC
Q 029472 94 RD-------------------TSQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVSENQYKGV 154 (193)
Q Consensus 94 ~~-------------------~~~~D~af~gadgvd~~~~~~i~g~g~~~~~ea~~k~k~i~~~S~~~ilLaD~SKf~~~ 154 (193)
++ -+++|++|+||+|++.+ +|+. .++.+++.+++.+ +++|+++|+|+|||||++.
T Consensus 142 GG~~~~~~~~~~G~~a~~~l~~~~~d~afis~~gi~~~-~G~~----~~~~~ea~~k~~~-~~~a~~~ill~D~sKf~~~ 215 (240)
T PRK10411 142 GGTLERKYGCYVNPSLISQLKSLEIDLFIFSCEGIDSS-GALW----DSNAINADYKSML-LKRAAQSLLLIDKSKFNRS 215 (240)
T ss_pred CCEEeCCCCceECHHHHHHHHhcCCCEEEEeceeECCC-CCcc----cCCHHHHHHHHHH-HHHhCcEEEEEeccccCCc
Confidence 32 13899999999999984 4331 1456888888555 5999999999999999863
No 14
>COG1349 GlpR Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]
Probab=99.94 E-value=3.7e-26 Score=195.55 Aligned_cols=150 Identities=15% Similarity=0.145 Sum_probs=113.5
Q ss_pred hhhccCChHHHHHHHHHHHhhcCCCCCEEEECcCHHHHHHHHHHHhHhhcCCCCCeEEEcCcHHHHHHHHH-CCCcEEEc
Q 029472 15 SRALSNGSSVLFRAAKHTVDTYITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAV-AGIPLDQY 93 (193)
Q Consensus 15 ~~~~s~~~~ekk~iaa~~A~~~I~dg~tI~LdsGsT~~~la~~L~~~~~~~~~~~lTVVTnSl~ia~~l~~-~~i~v~~l 93 (193)
..+...+.++|+++| ++|+++|+|||+||||+|||++++|++|++. +++||||||++++..|.. .++.++.+
T Consensus 68 ~~r~~~~~~eK~~IA-~~Aa~lI~~g~~ifld~GTT~~~la~~L~~~------~~ltviTNsl~ia~~l~~~~~~~vi~~ 140 (253)
T COG1349 68 SERKALNTEEKRAIA-KAAATLIEDGDTIFLDAGTTTLALARALPDD------NNLTVITNSLNIAAALLEKPNIEVILL 140 (253)
T ss_pred HHHHHhhHHHHHHHH-HHHHhhCCCCCEEEECCCcHHHHHHHHhCcC------CCeEEEeCCHHHHHHHHhCCCCeEEEe
Confidence 356667777777766 9999999999999999999999999999864 359999999999998854 56777665
Q ss_pred CC-------------------CCcccEEEeccccccCCCcceecCCCCCCcchhHHHHHHHHHhcCeEEEEEeCCCccCC
Q 029472 94 RD-------------------TSQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVSENQYKGV 154 (193)
Q Consensus 94 ~~-------------------~~~~D~af~gadgvd~~~~~~i~g~g~~~~~ea~~k~k~i~~~S~~~ilLaD~SKf~~~ 154 (193)
++ -+++|++|+||+|++. +.|+. .++.+++.+++.| +++|+++|+|+|||||++.
T Consensus 141 GG~~~~~~~~~~G~~a~~~l~~~~~d~aFig~~gi~~-~~g~~----~~~~~ea~~k~~~-~~~a~~~~ll~D~sKf~~~ 214 (253)
T COG1349 141 GGTVRKKSGSFVGPLAEEFLRQFNFDKAFIGADGIDL-EGGLT----TFNEEEAEVKRAM-IEAAREVILLADSSKFGRV 214 (253)
T ss_pred CcEEEcCCCeEEcHHHHHHHHhCcccEEEEeccccCC-CCCcC----cCCHHHHHHHHHH-HHhhCcEEEEEcCCccCCc
Confidence 32 1389999999999998 44332 1556888888555 5999999999999999974
Q ss_pred CC----C--cccEEEecCCHHH-HHHHHHh
Q 029472 155 LD----G--SVPVLVQPVNWME-TAEEIDD 177 (193)
Q Consensus 155 l~----~--~~pvEv~p~~~~~-~~~~l~~ 177 (193)
-- . .+...|.-..... ..+.+++
T Consensus 215 ~~~~~~~l~~i~~iiTD~~~~~~~~~~~~~ 244 (253)
T COG1349 215 APARVAPLSEIDTIITDKGLPEALLEALEA 244 (253)
T ss_pred eeEEeeCHHHCcEEEeCCCCCHHHHHHHHh
Confidence 42 1 2555665443322 3444444
No 15
>PRK10434 srlR DNA-bindng transcriptional repressor SrlR; Provisional
Probab=99.94 E-value=5.3e-26 Score=194.72 Aligned_cols=154 Identities=12% Similarity=0.100 Sum_probs=113.3
Q ss_pred hhhccCChHHHHHHHHHHHhhcCCCCCEEEECcCHHHHHHHHHHHhHhhcCCCCCeEEEcCcHHHHHHHHH-CC-CcEEE
Q 029472 15 SRALSNGSSVLFRAAKHTVDTYITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAV-AG-IPLDQ 92 (193)
Q Consensus 15 ~~~~s~~~~ekk~iaa~~A~~~I~dg~tI~LdsGsT~~~la~~L~~~~~~~~~~~lTVVTnSl~ia~~l~~-~~-i~v~~ 92 (193)
+.+...+.++|++++ ++|+++|+|||+||||+|||+++++++|++. +++||||||+.++..|.+ .+ ++++.
T Consensus 68 ~~r~~~~~~~K~~IA-~~Aa~~I~~g~tIfld~GtT~~~la~~L~~~------~~ltVvTnsl~ia~~l~~~~~~~~v~l 140 (256)
T PRK10434 68 DHKTLINTHKKELIA-EAAVSLIHDGDSIILDAGSTVLQMVPLLSRF------NNITVMTNSLHIVNALSELDNEQTILM 140 (256)
T ss_pred HHHHHhhHHHHHHHH-HHHHhhCCCCCEEEEcCcHHHHHHHHHhccC------CCeEEEECCHHHHHHHhhCCCCCEEEE
Confidence 445556666665555 9999999999999999999999999999863 379999999999998875 44 68776
Q ss_pred cCC-------------------CCcccEEEeccccccCCCcceecCCCCCCcchhHHHHHHHHHhcCeEEEEEeCCCccC
Q 029472 93 YRD-------------------TSQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVSENQYKG 153 (193)
Q Consensus 93 l~~-------------------~~~~D~af~gadgvd~~~~~~i~g~g~~~~~ea~~k~k~i~~~S~~~ilLaD~SKf~~ 153 (193)
+++ -+++|+||+||+||+.+ .|+ ..+.+++.+++ .|+++|+++|+|+||+||++
T Consensus 141 ~GG~~~~~~~~~~G~~a~~~l~~~~~D~afi~~~gi~~~-~G~-----t~~~~~~~~k~-~~~~~a~~~illaD~sKf~~ 213 (256)
T PRK10434 141 PGGTFRKKSASFHGQLAENAFEHFTFDKLFIGTDGIDLN-AGV-----TTFNEVYTVSK-AMCNAAREIILMADSSKFGR 213 (256)
T ss_pred ECCEEeCCCCeEECHHHHHHHHhCcCCEEEEcCceecCC-CCc-----CCCCHHHHHHH-HHHHHcCcEEEEECCcccCC
Confidence 532 13899999999999984 433 12234577875 45599999999999999997
Q ss_pred CC-CCc-----ccEEEecCCH-HHHHHHHHhhcCCCce
Q 029472 154 VL-DGS-----VPVLVQPVNW-METAEEIDDLFIGDAE 184 (193)
Q Consensus 154 ~l-~~~-----~pvEv~p~~~-~~~~~~l~~~~~g~~~ 184 (193)
.- ... +..-|..... ..+.+.|.+. |...
T Consensus 214 ~~~~~~~~~~~id~lITD~~~~~~~~~~l~~~--~~~v 249 (256)
T PRK10434 214 KSPNVVCSLEKVDKLITDAGIDPAFRQALEEK--GIEV 249 (256)
T ss_pred ceeEEEecHHHCCEEEECcCCCHHHHHHHHHC--CCEE
Confidence 43 222 4445554332 3566777774 5443
No 16
>PRK13509 transcriptional repressor UlaR; Provisional
Probab=99.94 E-value=6.2e-26 Score=193.80 Aligned_cols=149 Identities=12% Similarity=0.053 Sum_probs=113.2
Q ss_pred hhhccCChHHHHHHHHHHHhhcCCCCCEEEECcCHHHHHHHHHHHhHhhcCCCCCeEEEcCcHHHHHHHHH-CCCcEEEc
Q 029472 15 SRALSNGSSVLFRAAKHTVDTYITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAV-AGIPLDQY 93 (193)
Q Consensus 15 ~~~~s~~~~ekk~iaa~~A~~~I~dg~tI~LdsGsT~~~la~~L~~~~~~~~~~~lTVVTnSl~ia~~l~~-~~i~v~~l 93 (193)
+.+...+.++|+++ |++|+++|+|||+||||+|||+++++++|++ +++||||||+++|..|.+ ++++++.+
T Consensus 70 ~~r~~~~~~~K~~I-A~~Aa~~I~~g~~Ifld~GsT~~~la~~L~~-------~~ltVvTnsl~ia~~l~~~~~~~v~l~ 141 (251)
T PRK13509 70 NIHQAQNHDEKVRI-AKAASQLCNPGESVVINCGSTAFLLGRELCG-------KPVQIITNYLPLANYLIDQEHDSVIIM 141 (251)
T ss_pred HHHHHhCHHHHHHH-HHHHHHhCCCCCEEEECCcHHHHHHHHHhCC-------CCeEEEeCCHHHHHHHHhCCCCEEEEE
Confidence 34555666666655 5999999999999999999999999999975 279999999999998864 56787765
Q ss_pred CC------------------CCcccEEEeccccccCCCcceecCCCCCCcchhHHHHHHHHHhcCeEEEEEeCCCccCCC
Q 029472 94 RD------------------TSQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVSENQYKGVL 155 (193)
Q Consensus 94 ~~------------------~~~~D~af~gadgvd~~~~~~i~g~g~~~~~ea~~k~k~i~~~S~~~ilLaD~SKf~~~l 155 (193)
++ -+++|+||+||+||+. + |+. .++.+++.+++.|+ ++|+++|+|||||||++.-
T Consensus 142 GG~~~~~~~~~~G~~~~~l~~~~~d~aFig~~gi~~-~-G~~----~~~~~e~~~k~~~~-~~s~~~illaDssKfg~~~ 214 (251)
T PRK13509 142 GGQYNKSQSITLSPQGSENSLYAGHWMFTSGKGLTA-D-GLY----KTDMLTAMAEQKML-SVVGKLVVLVDSSKIGERA 214 (251)
T ss_pred CCeEcCCcceeECHHHHHHHhCcCCEEEECCCcCCC-C-cCC----CCCHHHHHHHHHHH-HHhCcEEEEEcccccCcee
Confidence 42 1389999999999996 3 221 24567888886665 9999999999999999743
Q ss_pred -CC-----cccEEEecCCH-HHHHHHHHhh
Q 029472 156 -DG-----SVPVLVQPVNW-METAEEIDDL 178 (193)
Q Consensus 156 -~~-----~~pvEv~p~~~-~~~~~~l~~~ 178 (193)
.. .+..-|..... ..+.+.|.+.
T Consensus 215 ~~~~~~l~~id~iITD~~~~~~~~~~~~~~ 244 (251)
T PRK13509 215 GMLFSRADQIDMLITGKNADPEVLQQLEAQ 244 (251)
T ss_pred eEEecCHHHCCEEEeCcCCCHHHHHHHHHC
Confidence 22 24555554432 4567777774
No 17
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=98.12 E-value=7.4e-05 Score=65.92 Aligned_cols=123 Identities=15% Similarity=0.035 Sum_probs=88.7
Q ss_pred hHHHHHHHHHHHhhcCCCCCEEEE-CcCHHHHHHHHHHHhHhhcCCCCCeE-EEcCc------HHHHHHHHHCCCcEEEc
Q 029472 22 SSVLFRAAKHTVDTYITSGMVVGL-GSGQASAMAIEYMGRQLRAGALKDVI-GIPTS------VASANEAAVAGIPLDQY 93 (193)
Q Consensus 22 ~~ekk~iaa~~A~~~I~dg~tI~L-dsGsT~~~la~~L~~~~~~~~~~~lT-VVTnS------l~ia~~l~~~~i~v~~l 93 (193)
.+..++.+++.++.+|+|||+|.= +.|+|+..+.+.-.++. ++++ +||-| ...|..|++.|++++.+
T Consensus 102 ~~~a~~~ia~~~a~~i~dg~~IlTh~~S~~v~~~l~~A~~~~-----k~~~V~VtESRP~~eG~~~ak~L~~~gI~~~~I 176 (301)
T COG1184 102 VEKAKERIAEIGAERIHDGDVILTHSFSKTVLEVLKTAADRG-----KRFKVIVTESRPRGEGRIMAKELRQSGIPVTVI 176 (301)
T ss_pred HHHHHHHHHHHHHhhccCCCEEEEecCcHHHHHHHHHhhhcC-----CceEEEEEcCCCcchHHHHHHHHHHcCCceEEE
Confidence 344455566999999999998875 88999999988776542 2344 45554 45677889999987765
Q ss_pred CCC------CcccEEEeccccccCCCcceecCCCCCCcchhHHHHHHHHHhcCeEEEEEeCCCccCCCC
Q 029472 94 RDT------SQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVSENQYKGVLD 156 (193)
Q Consensus 94 ~~~------~~~D~af~gadgvd~~~~~~i~g~g~~~~~ea~~k~k~i~~~S~~~ilLaD~SKf~~~l~ 156 (193)
-+- ..+|++|+|+|+|.. +++++.--|+ ..+- ...-+...-+++++.+-||....-
T Consensus 177 ~Dsa~~~~~~~vd~VivGad~I~~-nG~lvnkiGT-----~~lA-~~A~e~~~Pf~v~aesyKf~p~~~ 238 (301)
T COG1184 177 VDSAVGAFMSRVDKVLVGADAILA-NGALVNKIGT-----SPLA-LAARELRVPFYVVAESYKFVPKTL 238 (301)
T ss_pred echHHHHHHHhCCEEEECccceec-CCcEEeccch-----HHHH-HHHHHhCCCEEEEeeeeccccccc
Confidence 331 269999999999998 7877765555 3332 222244567999999999998554
No 18
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated
Probab=98.11 E-value=5.4e-05 Score=66.11 Aligned_cols=129 Identities=17% Similarity=0.144 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHhhcCCCCCEEEE-CcCHHHHHHHHHHHhHhhcCCCCCeEEE-cC------cHHHHHHHHHCCCcEEEcC
Q 029472 23 SVLFRAAKHTVDTYITSGMVVGL-GSGQASAMAIEYMGRQLRAGALKDVIGI-PT------SVASANEAAVAGIPLDQYR 94 (193)
Q Consensus 23 ~ekk~iaa~~A~~~I~dg~tI~L-dsGsT~~~la~~L~~~~~~~~~~~lTVV-Tn------Sl~ia~~l~~~~i~v~~l~ 94 (193)
.+-.+.+++.++++|++|++|.- +-++|+..+.+...+. | ++++|+ +- ....|.+|.+.|+++..+.
T Consensus 93 ~~~~~~I~~~a~~~I~~g~~ILTh~~S~tv~~~l~~A~~~---g--k~~~V~v~EsrP~~qG~~la~eL~~~GI~vtlI~ 167 (275)
T PRK08335 93 EEAKREIGNIGSELIDDGDVIITHSFSSAVLEILKTAKRK---G--KRFKVILTESAPDYEGLALANELEFLGIEFEVIT 167 (275)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEEECCcHHHHHHHHHHHHc---C--CceEEEEecCCCchhHHHHHHHHHHCCCCEEEEe
Confidence 34445566999999999997766 5567888887766543 2 234443 22 3456778888999877653
Q ss_pred CC------CcccEEEeccccccCCCcceecCCCCCCcchhHHHHHHHHHhcCeEEEEEeCCCccCCCC-CcccEEE
Q 029472 95 DT------SQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVSENQYKGVLD-GSVPVLV 163 (193)
Q Consensus 95 ~~------~~~D~af~gadgvd~~~~~~i~g~g~~~~~ea~~k~k~i~~~S~~~ilLaD~SKf~~~l~-~~~pvEv 163 (193)
+- .++|++++|+|.|.. ++++..--|+ ..+- .+.-.+..-+|++|..+||...+. ..+|+|=
T Consensus 168 Dsa~~~~m~~vd~VivGAD~I~~-nG~v~NKiGT-----~~lA-~~Ak~~~vPfyV~a~~~k~~~~~~~~~i~iee 236 (275)
T PRK08335 168 DAQLGLFAKEATLALVGADNVTR-DGYVVNKAGT-----YLLA-LACHDNGVPFYVAAETFKFHPELKSEEVELVE 236 (275)
T ss_pred ccHHHHHHHhCCEEEECccEEec-CCCEeehhhH-----HHHH-HHHHHcCCCEEEECccceecccCCCCCccccc
Confidence 31 369999999999998 6766554444 3332 222345678999999999997653 3566543
No 19
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family. The delineation of this family was based originally, in part, on a discussion and neighbor-joining phylogenetic study by Kyrpides and Woese of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. Recently, Sato, et al. assigned the function ribulose-1,5 bisphosphate isomerase.
Probab=98.10 E-value=7.2e-05 Score=65.91 Aligned_cols=129 Identities=18% Similarity=0.112 Sum_probs=88.2
Q ss_pred HHHHHHHHHhhcCCCCCEEEE-CcCHHHHHHHHHHHhHhhcCCCCCeEE-EcCc------HHHHHHHHHCCCcEEEcCC-
Q 029472 25 LFRAAKHTVDTYITSGMVVGL-GSGQASAMAIEYMGRQLRAGALKDVIG-IPTS------VASANEAAVAGIPLDQYRD- 95 (193)
Q Consensus 25 kk~iaa~~A~~~I~dg~tI~L-dsGsT~~~la~~L~~~~~~~~~~~lTV-VTnS------l~ia~~l~~~~i~v~~l~~- 95 (193)
-.+.+++.|+++|++|++|.- +.++|+..+.+...+. | ++++| |+-| ..+|.+|.+.|+++..+.+
T Consensus 101 a~~~I~~~a~~~i~~g~~ILT~~~S~tv~~~l~~a~~~---~--~~f~V~v~EsrP~~~G~~~a~~L~~~gI~vtlI~Ds 175 (301)
T TIGR00511 101 AQERIGEIGAKRIRDGDVVMTHCNSEAALSVIKTAFEQ---G--KDIEVIATETRPRKQGHITAKELRDYGIPVTLIVDS 175 (301)
T ss_pred HHHHHHHHHHHHcCCCCEEEEECCcHHHHHHHHHHHHc---C--CcEEEEEecCCCcchHHHHHHHHHHCCCCEEEEehh
Confidence 344566999999999998775 6678888887766543 2 23333 3333 3467788889998776533
Q ss_pred -----CCcccEEEeccccccCCCcceecCCCCCCcchhHHHHHHHHHhcCeEEEEEeCCCccCCC--CCcccEEEec
Q 029472 96 -----TSQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVSENQYKGVL--DGSVPVLVQP 165 (193)
Q Consensus 96 -----~~~~D~af~gadgvd~~~~~~i~g~g~~~~~ea~~k~k~i~~~S~~~ilLaD~SKf~~~l--~~~~pvEv~p 165 (193)
+.++|++|+|+|.|.. +++++.--|+ ..+- .+.-.+..-+|++|+..||.... |..+++|-.+
T Consensus 176 a~~~~m~~vd~VivGad~v~~-nG~v~nkiGT-----~~lA-~~Ak~~~vPv~V~a~~~K~~~~~~~~~~~~ie~~~ 245 (301)
T TIGR00511 176 AVRYFMKEVDHVVVGADAITA-NGALINKIGT-----SQLA-LAAREARVPFMVAAETYKFHPKTITGELVEIEERD 245 (301)
T ss_pred HHHHHHHhCCEEEECccEEec-CCCEEEHHhH-----HHHH-HHHHHhCCCEEEEcccceecCCCCCCCcccccccC
Confidence 1369999999999998 6777654454 3332 22234567899999999999754 4456665544
No 20
>PRK08535 translation initiation factor IF-2B subunit delta; Provisional
Probab=98.08 E-value=4.4e-05 Score=67.52 Aligned_cols=128 Identities=19% Similarity=0.134 Sum_probs=87.0
Q ss_pred HHHHHHHHhhcCCCCCEEEE-CcCHHHHHHHHHHHhHhhcCCCCCeEE-EcCc------HHHHHHHHHCCCcEEEcCC--
Q 029472 26 FRAAKHTVDTYITSGMVVGL-GSGQASAMAIEYMGRQLRAGALKDVIG-IPTS------VASANEAAVAGIPLDQYRD-- 95 (193)
Q Consensus 26 k~iaa~~A~~~I~dg~tI~L-dsGsT~~~la~~L~~~~~~~~~~~lTV-VTnS------l~ia~~l~~~~i~v~~l~~-- 95 (193)
.+.|++.|.++|++|++|.- +.++|+..+.+...+. | ++++| |+-| ..+|.+|.+.|+++..+.+
T Consensus 107 ~~~I~~~a~~~i~~g~~ILT~~~S~tv~~~l~~A~~~---~--k~~~V~v~EsrP~~~G~~~a~~L~~~GI~vtlI~Dsa 181 (310)
T PRK08535 107 VEKIGEIGAKRIRDGDVIMTHCNSSAALSVIKTAHEQ---G--KDIEVIATETRPRNQGHITAKELAEYGIPVTLIVDSA 181 (310)
T ss_pred HHHHHHHHHHHcCCCCEEEEeCCcHHHHHHHHHHHHC---C--CeEEEEEecCCchhhHHHHHHHHHHCCCCEEEEehhH
Confidence 34456899999999998776 6678888887766543 2 23443 3333 3467788889998776533
Q ss_pred ----CCcccEEEeccccccCCCcceecCCCCCCcchhHHHHHHHHHhcCeEEEEEeCCCccCCC--CCcccEEEec
Q 029472 96 ----TSQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVSENQYKGVL--DGSVPVLVQP 165 (193)
Q Consensus 96 ----~~~~D~af~gadgvd~~~~~~i~g~g~~~~~ea~~k~k~i~~~S~~~ilLaD~SKf~~~l--~~~~pvEv~p 165 (193)
+.++|++|+|+|.|.. +++++.--|+ ..+- .+.-.+..-+|++|+..||.... |..+|+|-.+
T Consensus 182 v~~~m~~vd~VivGAd~v~~-nG~v~nkiGT-----~~~A-~~Ak~~~vPv~V~a~~~K~~~~~~~~~~~~ie~~~ 250 (310)
T PRK08535 182 VRYFMKDVDKVVVGADAITA-NGAVINKIGT-----SQIA-LAAHEARVPFMVAAETYKFSPKTLLGELVEIEERD 250 (310)
T ss_pred HHHHHHhCCEEEECccEEec-CCCEEeHHhH-----HHHH-HHHHHhCCCEEEecccceecCCCCCCCcceecccC
Confidence 1369999999999998 6776654444 3332 22234567899999999999754 4456665443
No 21
>TIGR00524 eIF-2B_rel eIF-2B alpha/beta/delta-related uncharacterized proteins. This model, eIF-2B_rel, describes half of a superfamily, where the other half consists of eukaryotic translation initiation factor 2B (eIF-2B) subunits alpha, beta, and delta. It is unclear whether the eIF-2B_rel set is monophyletic, or whether they are all more closely related to each other than to any eIF-2B subunit because the eIF-2B clade is highly derived. Members of this branch of the family are all uncharacterized with respect to function and are found in the Archaea, Bacteria, and Eukarya, although a number are described as putative translation intiation factor components. Proteins found by eIF-2B_rel include at least three clades, including a set of uncharacterized eukaryotic proteins, a set found in some but not all Archaea, and a set universal so far among the Archaea and closely related to several uncharacterized bacterial proteins.
Probab=98.05 E-value=7.2e-05 Score=66.06 Aligned_cols=127 Identities=13% Similarity=0.016 Sum_probs=85.9
Q ss_pred HHHHHHHhhcCCCCCEEEECc-C--------HHHHHHHHHHHhHhhcCCCCCeEE-EcCc-------HHHHHHHHHCCCc
Q 029472 27 RAAKHTVDTYITSGMVVGLGS-G--------QASAMAIEYMGRQLRAGALKDVIG-IPTS-------VASANEAAVAGIP 89 (193)
Q Consensus 27 ~iaa~~A~~~I~dg~tI~Lds-G--------sT~~~la~~L~~~~~~~~~~~lTV-VTnS-------l~ia~~l~~~~i~ 89 (193)
+.|++.|+++|++|++|.-=+ + +|++.+.+...+. | ++.+| |+-| -.++.+|.+.|++
T Consensus 106 ~~Ia~~a~~~I~~g~~ILT~~~Sg~lat~~~~tv~~~l~~A~~~---g--~~~~V~v~EsrP~~~G~~~~a~~L~~~gI~ 180 (303)
T TIGR00524 106 RKIGENGAKLIKDGDTVLTHCNAGALATSDYGTALGVIRSAWED---G--KRIRVIACETRPRNQGSRLTAWELMQDGID 180 (303)
T ss_pred HHHHHHHHHHccCCCEEEEecCCccccccCcchHHHHHHHHHHc---C--CceEEEECCCCCccchHHHHHHHHHHCCCC
Confidence 445689999999999877643 3 5787777766543 2 23333 3322 4567788899998
Q ss_pred EEEcCC------CC--cccEEEeccccccCCCcceecCCCCCCcchhHHHHHHHHHhcCeEEEEEeCCCccCCC--CCcc
Q 029472 90 LDQYRD------TS--QIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVSENQYKGVL--DGSV 159 (193)
Q Consensus 90 v~~l~~------~~--~~D~af~gadgvd~~~~~~i~g~g~~~~~ea~~k~k~i~~~S~~~ilLaD~SKf~~~l--~~~~ 159 (193)
+..+.+ +. .+|++++|+|.|.. +++++.--|+ ..+- .+.-.+..-+|++|.+.||.... |..+
T Consensus 181 vtlI~Dsa~~~~m~~~~vd~VlvGAd~v~~-nG~v~nk~GT-----~~lA-~~Ak~~~vPv~V~a~s~K~~~~~~~g~~i 253 (303)
T TIGR00524 181 VTLITDSMAAYFMQKGEIDAVIVGADRIAR-NGDVANKIGT-----YQLA-VLAKEFRIPFFVAAPLSTFDTKTSCGEDI 253 (303)
T ss_pred EEEEChhHHHHHccccCCCEEEEcccEEec-CCCEeEhhhH-----HHHH-HHHHHhCCCEEEecccccccCCCCCcccc
Confidence 776422 12 69999999999998 6877655554 3332 22234456899999999999753 4567
Q ss_pred cEEEec
Q 029472 160 PVLVQP 165 (193)
Q Consensus 160 pvEv~p 165 (193)
|+|-.+
T Consensus 254 ~~e~~~ 259 (303)
T TIGR00524 254 VIEERD 259 (303)
T ss_pred ccccCC
Confidence 776543
No 22
>KOG1466 consensus Translation initiation factor 2B, alpha subunit (eIF-2Balpha/GCN3) [Translation, ribosomal structure and biogenesis]
Probab=97.98 E-value=7.2e-05 Score=64.86 Aligned_cols=128 Identities=13% Similarity=0.138 Sum_probs=85.8
Q ss_pred HHHHHHHHhhcCCCCCEEEECc-CHHHHHHHHHHHhHhhcCCCCCeEEEcC-------cHHHHHHHHHCCCcEEEcCC--
Q 029472 26 FRAAKHTVDTYITSGMVVGLGS-GQASAMAIEYMGRQLRAGALKDVIGIPT-------SVASANEAAVAGIPLDQYRD-- 95 (193)
Q Consensus 26 k~iaa~~A~~~I~dg~tI~Lds-GsT~~~la~~L~~~~~~~~~~~lTVVTn-------Sl~ia~~l~~~~i~v~~l~~-- 95 (193)
++.||+.+-.+|.||++|..-+ +.-++++...=.+ ++ +...|.-+ ....+.+|.+.|+++..+-+
T Consensus 117 R~~IA~l~~~Fi~dg~~ILtHg~SRvVl~~L~~Aa~---~~--~~F~V~vTEsrPd~sG~lm~~~L~~~~IPvtlvlDSa 191 (313)
T KOG1466|consen 117 RQKIAMLAQDFITDGCTILTHGYSRVVLEVLLTAAQ---NK--KRFRVYVTESRPDGSGKLMAKELKKLGIPVTLVLDSA 191 (313)
T ss_pred HHHHHHHhhhHhhCCCEEEEcchhHHHHHHHHHHHh---cC--ceEEEEEecCCCCCchhHHHHHHHhcCCCeEEEehhh
Confidence 4567799999999999998844 4444544333222 22 34555433 56778889999999765422
Q ss_pred ----CCcccEEEeccccccCCCcceecCCCCCCcchhHHHHHHHHHhc-CeEEEEEeCCCccCCC--C-CcccEEEecC
Q 029472 96 ----TSQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAA-DKLVFMVSENQYKGVL--D-GSVPVLVQPV 166 (193)
Q Consensus 96 ----~~~~D~af~gadgvd~~~~~~i~g~g~~~~~ea~~k~k~i~~~S-~~~ilLaD~SKf~~~l--~-~~~pvEv~p~ 166 (193)
+.++|++|.||+||-+ ++|+|.--|+ ..+ .++++.. +-+|++|.+-||++-+ . ..+|-+--|+
T Consensus 192 VgyvMe~vD~VlVGAEGVvE-sGGIIN~iGT-----yq~--~v~Ak~~~kPfYV~AES~KFvRlfPLnQ~Dlp~~~~p~ 262 (313)
T KOG1466|consen 192 VGYVMERVDLVLVGAEGVVE-SGGIINKIGT-----YQV--AVCAKSMNKPFYVVAESHKFVRLFPLNQKDLPPALPPF 262 (313)
T ss_pred HHHHHhhccEEEEccceeee-cCceeeeccc-----chh--hhhHHhcCCCeEEEeeccceeeeccCcccccccccCCc
Confidence 1379999999999988 7888876555 222 2223333 4699999999999855 3 3466664444
No 23
>TIGR00512 salvage_mtnA S-methyl-5-thioribose-1-phosphate isomerase. The delineation of this family was based in part on a discussion and neighbor-joining phylogenetic study, by Kyrpides and Woese, of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. This clade is now recognized to include the methionine salvage pathway enzyme MtnA.
Probab=97.96 E-value=0.00018 Score=64.31 Aligned_cols=128 Identities=16% Similarity=0.086 Sum_probs=85.1
Q ss_pred HHHHHHHHhhcCCCCC----EEEEC--cC-------HHHHHHHHHHHhHhhcCCCCCeEEE-cCcH-------HHHHHHH
Q 029472 26 FRAAKHTVDTYITSGM----VVGLG--SG-------QASAMAIEYMGRQLRAGALKDVIGI-PTSV-------ASANEAA 84 (193)
Q Consensus 26 k~iaa~~A~~~I~dg~----tI~Ld--sG-------sT~~~la~~L~~~~~~~~~~~lTVV-TnSl-------~ia~~l~ 84 (193)
.+.|++.++++|+||+ +|.-= +| .|++.+.+...++ | ++.+|+ +-|- .++.+|.
T Consensus 129 ~~~I~~~g~~~I~dg~~~~~~ILThcnsg~lat~~~gtal~~l~~A~~~---g--~~~~V~v~EsrP~~qG~rlta~~L~ 203 (331)
T TIGR00512 129 NRAIGENGAALIKKGVAAPLRVLTHCNTGSLATAGYGTALGVIRSAHEK---G--RLEHVYADETRPRLQGARLTAWELV 203 (331)
T ss_pred HHHHHHHHHHHhcCCCCCCceEEeecCCccccccccchHHHHHHHHHHc---C--CceEEEECCCCchhhHHHHHHHHHH
Confidence 3446699999999999 87762 22 3777777766543 2 234443 3222 2467788
Q ss_pred HCCCcEEEcCC------C--CcccEEEeccccccCCCcceecCCCCCCcchhHHHHHHHHHhcCeEEEEEeCCCccCCC-
Q 029472 85 VAGIPLDQYRD------T--SQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVSENQYKGVL- 155 (193)
Q Consensus 85 ~~~i~v~~l~~------~--~~~D~af~gadgvd~~~~~~i~g~g~~~~~ea~~k~k~i~~~S~~~ilLaD~SKf~~~l- 155 (193)
+.|+++..+.+ + ..+|++++|||.|.. +++++.--|+ ..+- .+.-.+..-+|++|..+||....
T Consensus 204 ~~GI~vtlI~Dsav~~~m~~~~vd~VivGAd~v~~-nG~v~nkiGT-----~~lA-~~Ak~~~vPfyV~a~~~kfd~~~~ 276 (331)
T TIGR00512 204 QEGIPATLITDSMAAHLMKHGEVDAVIVGADRIAA-NGDTANKIGT-----YQLA-VLAKHHGVPFYVAAPTSTIDLETK 276 (331)
T ss_pred HCCCCEEEEcccHHHHHhcccCCCEEEEcccEEec-CCCEeehhhH-----HHHH-HHHHHhCCCEEEeccccccccCCC
Confidence 89998776432 1 169999999999998 6776654444 3332 22234556899999999998653
Q ss_pred -CCcccEEEec
Q 029472 156 -DGSVPVLVQP 165 (193)
Q Consensus 156 -~~~~pvEv~p 165 (193)
|..+|+|-.+
T Consensus 277 ~~~~i~iE~r~ 287 (331)
T TIGR00512 277 DGAEIPIEERP 287 (331)
T ss_pred CccccccccCC
Confidence 4567777655
No 24
>PF01008 IF-2B: Initiation factor 2 subunit family; InterPro: IPR000649 Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit. The eukaryotic translation initiation factor EIF-2B is a complex made up of five different subunits, alpha, beta, gamma, delta and epsilon, and catalyses the exchange of EIF-2-bound GDP for GTP. This family includes initiation factor 2B alpha, beta and delta subunits from eukaryotes; related proteins from archaebacteria and IF-2 from prokaryotes and also contains a subfamily of proteins in eukaryotes, archaeae (e.g. Pyrococcus furiosus), or eubacteria such as Bacillus subtilis and Thermotoga maritima. Many of these proteins were initially annotated as putative translation initiation factors despite the fact that there is no evidence for the requirement of an IF2 recycling factor in prokaryotic translation initiation. Recently, one of these proteins from B. subtilis has been functionally characterised as a 5-methylthioribose-1-phosphate isomerase (MTNA) []. This enzyme participates in the methionine salvage pathway catalysing the isomerisation of 5-methylthioribose-1-phosphate to 5-methylthioribulose-1-phosphate []. The methionine salvage pathway leads to the synthesis of methionine from methylthioadenosine, the end product of the spermidine and spermine anabolism in many species.; GO: 0044237 cellular metabolic process; PDB: 1VB5_A 1T5O_D 3A11_E 3VM6_C 1W2W_A 1T9K_A 3ECS_B 2YRF_A 2YVK_B 2A0U_A ....
Probab=97.70 E-value=0.00027 Score=60.86 Aligned_cols=119 Identities=15% Similarity=0.091 Sum_probs=72.9
Q ss_pred HHHHHHHHHhhcCCCCCEEEE-CcCHHHHHHHHHHHhHhhcCCCCCeEE-EcCcH------HHHHHHHHCCCcEEEcCC-
Q 029472 25 LFRAAKHTVDTYITSGMVVGL-GSGQASAMAIEYMGRQLRAGALKDVIG-IPTSV------ASANEAAVAGIPLDQYRD- 95 (193)
Q Consensus 25 kk~iaa~~A~~~I~dg~tI~L-dsGsT~~~la~~L~~~~~~~~~~~lTV-VTnSl------~ia~~l~~~~i~v~~l~~- 95 (193)
-.+.+++.+.++|++|++|.. |-++|+..+.+...+. | +++.| |+-|- ..|..|...|+++..+.+
T Consensus 93 ~~~~I~~~~~~~I~~~~~ILT~~~S~~v~~~l~~a~~~---~--~~~~V~v~es~P~~eG~~~a~~L~~~gi~v~~i~d~ 167 (282)
T PF01008_consen 93 AREKIADHASELINDGDTILTHGYSSTVERFLLSAKKK---G--KKFRVIVLESRPYNEGRLMAKELAEAGIPVTLIPDS 167 (282)
T ss_dssp HHHHHHHHHHCCC-TTEEEEEES--SHHHHHHHHHHHT---T--EEEEEEEE--TTTTHHHTHHHHHHHTT-EEEEE-GG
T ss_pred HHHHHHHHHHHhccCCeEEEEeCCchHHHHHHHHHHHc---C--CeEEEEEccCCcchhhhhHHHHhhhcceeEEEEech
Confidence 344456899999999998876 8889988887765432 1 23333 33333 567778888988766533
Q ss_pred -----CCc-ccEEEeccccccCCCcceecCCCCCCcchhHHHHHHHHHhcCeEEEEEeCCCccCCC
Q 029472 96 -----TSQ-IDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVSENQYKGVL 155 (193)
Q Consensus 96 -----~~~-~D~af~gadgvd~~~~~~i~g~g~~~~~ea~~k~k~i~~~S~~~ilLaD~SKf~~~l 155 (193)
+.+ +|++++|||.|.. +++++.--|+ ..+- -..-+...-+|++|++.||....
T Consensus 168 ~~~~~m~~~vd~VliGad~v~~-nG~v~nk~Gt-----~~~a-~~Ak~~~vPv~v~~~~~K~~~~~ 226 (282)
T PF01008_consen 168 AVGYVMPRDVDKVLIGADAVLA-NGGVVNKVGT-----LQLA-LAAKEFNVPVYVLAESYKFSPRY 226 (282)
T ss_dssp GHHHHHHCTESEEEEE-SEEET-TS-EEEETTH-----HHHH-HHHHHTT-EEEEE--GGGBETTC
T ss_pred HHHHHHHHhCCeeEEeeeEEec-CCCEeehhhH-----HHHH-HHHHhhCCCEEEEcccccccccc
Confidence 136 9999999999999 6877665554 3331 12223456899999999998764
No 25
>PRK05720 mtnA methylthioribose-1-phosphate isomerase; Reviewed
Probab=97.62 E-value=0.0013 Score=59.06 Aligned_cols=127 Identities=17% Similarity=0.078 Sum_probs=83.2
Q ss_pred HHHHHHHhhcCCCCCEEEEC--cCH-------HHHHHHHHHHhHhhcCCCCCeEE-EcCcH-------HHHHHHHHCCCc
Q 029472 27 RAAKHTVDTYITSGMVVGLG--SGQ-------ASAMAIEYMGRQLRAGALKDVIG-IPTSV-------ASANEAAVAGIP 89 (193)
Q Consensus 27 ~iaa~~A~~~I~dg~tI~Ld--sGs-------T~~~la~~L~~~~~~~~~~~lTV-VTnSl-------~ia~~l~~~~i~ 89 (193)
+.|++.++++|++|++|.-= +|+ |++.+.+...+. | ++++| |+-|- .+|.+|.+.|++
T Consensus 134 ~~I~~~g~~~I~~g~~ILThc~sg~lat~~~gTal~~i~~A~~~---g--k~~~V~v~EsRP~~qG~~lta~eL~~~GI~ 208 (344)
T PRK05720 134 RAIGEHGLTLIRKGQGILTHCNAGWLATAGYGTALAPIYAAKEK---G--IDIHVYADETRPRLQGARLTAWELYQAGID 208 (344)
T ss_pred HHHHHHHHHHccCCCEEEEecCCCcceecchhHHHHHHHHHHHc---C--CceEEEEcCCCChhhhHHHHHHHHHHCCCC
Confidence 34568899999999987752 333 566666665442 2 23444 33322 346778889998
Q ss_pred EEEcCCC--------CcccEEEeccccccCCCcceecCCCCCCcchhHHHHHHHHHhcCeEEEEEeCCCccCCC--CCcc
Q 029472 90 LDQYRDT--------SQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVSENQYKGVL--DGSV 159 (193)
Q Consensus 90 v~~l~~~--------~~~D~af~gadgvd~~~~~~i~g~g~~~~~ea~~k~k~i~~~S~~~ilLaD~SKf~~~l--~~~~ 159 (193)
+..+.+- ..+|++++|+|.|.. ++++..--|+ ..+- .+.-.+..-+|++|..+||.... |..+
T Consensus 209 vtlI~Dsa~~~~M~~~~vd~VivGAd~I~~-nG~v~NkiGT-----~~lA-l~Ak~~~vPfyV~a~~~kfd~~~~~g~~i 281 (344)
T PRK05720 209 VTVITDNMAAHLMQTGKIDAVIVGADRIAA-NGDVANKIGT-----YQLA-IAAKYHGVPFYVAAPSSTIDLTLADGKEI 281 (344)
T ss_pred EEEEcccHHHHHhcccCCCEEEEcccEEec-CCCEeehhhH-----HHHH-HHHHHhCCCEEEeccccccCcCCCCCccc
Confidence 7765321 149999999999998 6766554444 3332 22234567899999999998654 4567
Q ss_pred cEEEec
Q 029472 160 PVLVQP 165 (193)
Q Consensus 160 pvEv~p 165 (193)
|+|-.+
T Consensus 282 ~iE~r~ 287 (344)
T PRK05720 282 PIEERD 287 (344)
T ss_pred ccccCC
Confidence 776654
No 26
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional
Probab=97.51 E-value=0.0016 Score=58.95 Aligned_cols=129 Identities=12% Similarity=-0.005 Sum_probs=82.6
Q ss_pred HHHHHHHHHHhhcCCCCCEEEEC--cC--------HHHHHHHHHHHhHhhcCCCCCeEEE-cCcH-------HHHHHHHH
Q 029472 24 VLFRAAKHTVDTYITSGMVVGLG--SG--------QASAMAIEYMGRQLRAGALKDVIGI-PTSV-------ASANEAAV 85 (193)
Q Consensus 24 ekk~iaa~~A~~~I~dg~tI~Ld--sG--------sT~~~la~~L~~~~~~~~~~~lTVV-TnSl-------~ia~~l~~ 85 (193)
+..+.|++.++++|+||++|.-= +| .|++.+.+...+. | ++++|+ +-|- .++.+|.+
T Consensus 151 ~~~~~I~~~g~~~I~dg~~ILThcnsg~Lat~~g~gtal~~i~~a~~~---g--k~f~V~v~EsRP~~qG~rlta~eL~~ 225 (363)
T PRK05772 151 DAEIQMGLYGLEKLNDGDTVLTQCNAGGLATGTGLGTALAPVKLAKAL---G--MSVSVIAPETRPWLQGSRLTVYELME 225 (363)
T ss_pred HHHHHHHHHHHhhcCCCCEEEEecCCcchhhccccccHHHHHHHHHHC---C--CeEEEEECCCCccchhHHHHHHHHHH
Confidence 33455679999999999987663 23 2556666655543 2 345554 3322 24567888
Q ss_pred CCCcEEEcCC------C--CcccEEEeccccccCCCcceecCCCCCCcchhHHHHHHHHHhcCeEEEEEeCCCccCCCC-
Q 029472 86 AGIPLDQYRD------T--SQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVSENQYKGVLD- 156 (193)
Q Consensus 86 ~~i~v~~l~~------~--~~~D~af~gadgvd~~~~~~i~g~g~~~~~ea~~k~k~i~~~S~~~ilLaD~SKf~~~l~- 156 (193)
.||++..+.+ + ..+|++|+|+|.|.. ++++..--|+ ..+- .+.-.+..-+|++|..+||.....
T Consensus 226 ~GIpvtlI~Dsa~~~~m~~~~Vd~VivGAD~I~~-NG~v~NKiGT-----y~lA-~~Ak~~~vPfyV~ap~~k~d~~~~~ 298 (363)
T PRK05772 226 EGIKVTLITDTAVGLVMYKDMVNNVMVGADRILR-DGHVFNKIGT-----FKEA-VIAHELGIPFYALAPTSTFDLKSDV 298 (363)
T ss_pred CCCCEEEEehhHHHHHHhhcCCCEEEECccEEec-CCCEeehhhh-----HHHH-HHHHHhCCCEEEEccccccCccccc
Confidence 9998775432 1 149999999999988 6766544444 3332 222345568999999999997653
Q ss_pred CcccEEEe
Q 029472 157 GSVPVLVQ 164 (193)
Q Consensus 157 ~~~pvEv~ 164 (193)
..+|+|-.
T Consensus 299 ~~i~ieer 306 (363)
T PRK05772 299 NDVKIEER 306 (363)
T ss_pred cccccccC
Confidence 34566543
No 27
>PRK06371 translation initiation factor IF-2B subunit alpha; Provisional
Probab=97.42 E-value=0.0041 Score=55.71 Aligned_cols=126 Identities=15% Similarity=0.110 Sum_probs=80.6
Q ss_pred HHHHHHHhhcCCCCCEEEEC--cCH-------HHHHHHHHHHhHhhcCCCCCeEEEcCc-------HH-HHHHHHHCCCc
Q 029472 27 RAAKHTVDTYITSGMVVGLG--SGQ-------ASAMAIEYMGRQLRAGALKDVIGIPTS-------VA-SANEAAVAGIP 89 (193)
Q Consensus 27 ~iaa~~A~~~I~dg~tI~Ld--sGs-------T~~~la~~L~~~~~~~~~~~lTVVTnS-------l~-ia~~l~~~~i~ 89 (193)
+.+++.++++|++|++|.-= +|+ |++.+.+...+. | +++.|+-.- .. ++.+|.+.|++
T Consensus 124 ~~I~~~g~~~I~~g~~ILThcnsg~la~~~~gTal~~l~~A~~~---g--k~f~V~v~EsRP~~qG~rlta~eL~~~GI~ 198 (329)
T PRK06371 124 KKIGEYGNELIKNGARILTHCNAGALAVVDWGTALAPIRIAHRN---G--KNIFVFVDETRPRLQGARLTAWELAQEGID 198 (329)
T ss_pred HHHHHHHHHHcCCCCEEEEeCCCCcceeccchhHHHHHHHHHHc---C--CeeEEEECCCCCcchHHHHHHHHHHHCCCC
Confidence 34569999999999987763 243 456666666543 2 245554332 22 46788889998
Q ss_pred EEEcCCC--------CcccEEEeccccccCCCcceecCCCCCCcchhHHHHHHHHHhcCeEEEEEeCCCccCCC--CCcc
Q 029472 90 LDQYRDT--------SQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVSENQYKGVL--DGSV 159 (193)
Q Consensus 90 v~~l~~~--------~~~D~af~gadgvd~~~~~~i~g~g~~~~~ea~~k~k~i~~~S~~~ilLaD~SKf~~~l--~~~~ 159 (193)
+..+.+- ..+|++++|+|.|-. ++++..--|+ ..+- .+.-.+..-+|++|..++|.... |..+
T Consensus 199 vtlI~Dsa~~~~M~~~~Vd~VivGAd~I~a-NG~v~NKiGT-----~~lA-l~Ak~~~VPfyV~a~~~t~d~~~~~g~~i 271 (329)
T PRK06371 199 HAIIADNAAGYFMRKKEIDLVIVGADRIAS-NGDFANKIGT-----YEKA-VLAKVNGIPFYVAAPGSTFDFSIKSGDEI 271 (329)
T ss_pred EEEEcccHHHHHhhhcCCCEEEECccEEec-CCCEeehhhH-----HHHH-HHHHHcCCCEEEeccccccCCCCCCcCcc
Confidence 7754321 149999999999998 6766554444 3332 22224456789999988887543 4456
Q ss_pred cEEEe
Q 029472 160 PVLVQ 164 (193)
Q Consensus 160 pvEv~ 164 (193)
|+|-.
T Consensus 272 ~iEer 276 (329)
T PRK06371 272 PIEER 276 (329)
T ss_pred ccccC
Confidence 76643
No 28
>PRK06036 translation initiation factor IF-2B subunit alpha; Provisional
Probab=97.36 E-value=0.0042 Score=55.81 Aligned_cols=124 Identities=15% Similarity=0.061 Sum_probs=78.8
Q ss_pred HHHHHHHhhcCCCCCEEEEC--cCH-------HHHHHHHHHHhHhhcCCCCCeEEEcC-c------HH-HHHHHHHCCCc
Q 029472 27 RAAKHTVDTYITSGMVVGLG--SGQ-------ASAMAIEYMGRQLRAGALKDVIGIPT-S------VA-SANEAAVAGIP 89 (193)
Q Consensus 27 ~iaa~~A~~~I~dg~tI~Ld--sGs-------T~~~la~~L~~~~~~~~~~~lTVVTn-S------l~-ia~~l~~~~i~ 89 (193)
+.|++.++++|++|++|.-= +|+ |++.+.+...+. | +++.|+-. | .. ++.+|.+.|++
T Consensus 135 ~~I~~~g~~~I~~g~~ILThc~sg~lat~~~gTal~~l~~A~~~---g--k~~~V~v~EtRP~~qG~rlta~eL~~~GI~ 209 (339)
T PRK06036 135 KLIGKHGAKLLEDGDTVLTHCNAGRLACVDWGTALGVIRSAVEQ---G--KEIKVIACETRPLNQGSRLTTWELMQDNIP 209 (339)
T ss_pred HHHHHHHHHHccCCCEEEEecCCccccccccchHHHHHHHHHHc---C--CceEEEEcCCCchhhHHHHHHHHHHHcCCC
Confidence 34558899999999987773 343 666666666543 2 24555433 2 22 46788889998
Q ss_pred EEEcCC------CC--cccEEEeccccccCCCcceecCCCCCCcchhHHHHHHHHHhcCeEEEEEeCCCccCCCC-Cccc
Q 029472 90 LDQYRD------TS--QIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVSENQYKGVLD-GSVP 160 (193)
Q Consensus 90 v~~l~~------~~--~~D~af~gadgvd~~~~~~i~g~g~~~~~ea~~k~k~i~~~S~~~ilLaD~SKf~~~l~-~~~p 160 (193)
+..+.+ +. .+|++++|||.|.. + |+..--|+ ..+- .+.-.+..-+|++|..+||..... +.+|
T Consensus 210 vtlI~Dsa~~~~M~~~~Vd~VivGAd~I~a-n-Gv~NKiGT-----~~lA-~~Ak~~~vPfyV~ap~s~~d~~~~~g~i~ 281 (339)
T PRK06036 210 VTLITDSMAGIVMRQGMVDKVIVGADRITR-D-AVFNKIGT-----YTHS-VLAKEHEIPFYVAAPLSTFDFEGWEGSVK 281 (339)
T ss_pred EEEEehhHHHHHhccCCCCEEEECccchhh-c-CeehhhhH-----HHHH-HHHHHhCCCEEEEeecCccCCCcCCCCcc
Confidence 765432 11 39999999999988 6 44433333 2221 222345568999999999986432 2566
Q ss_pred EEE
Q 029472 161 VLV 163 (193)
Q Consensus 161 vEv 163 (193)
+|-
T Consensus 282 iE~ 284 (339)
T PRK06036 282 IEE 284 (339)
T ss_pred ccc
Confidence 654
No 29
>COG2057 AtoA Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit [Lipid metabolism]
Probab=97.35 E-value=0.00016 Score=61.30 Aligned_cols=107 Identities=19% Similarity=0.196 Sum_probs=71.3
Q ss_pred HHHHHHHHHhhcCCCCCEEEECcCHHHHHHHHHHHhHhhcCCCCCeEEEcCcHHHHHHHH-------------HCC-CcE
Q 029472 25 LFRAAKHTVDTYITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAA-------------VAG-IPL 90 (193)
Q Consensus 25 kk~iaa~~A~~~I~dg~tI~LdsGsT~~~la~~L~~~~~~~~~~~lTVVTnSl~ia~~l~-------------~~~-i~v 90 (193)
.++.+|++|+..++||+.|.||.| --...|.++++ ++.+++.|-+...-+. +.| .++
T Consensus 7 ~~e~ia~r~A~el~dG~~VnlGIG-lPtlvan~~~~--------~~~~~~~seng~Lg~g~~p~~~~~d~~linaG~~~v 77 (225)
T COG2057 7 EREMIAKRAARELKDGDYVNLGIG-LPTLVANYAPE--------GMNVLLQSENGLLGVGPAPLPGEEDADLINAGKQPV 77 (225)
T ss_pred hHHHHHHHHHHhccCCCEEEecCC-chHHhHhhccc--------ccceEEecCceeEEecCCCCCCCCCcchhhCCCcee
Confidence 345556899999999999999999 55667788875 3455666554432221 111 122
Q ss_pred EE---------------cCCCCcccEEEeccccccCCCcc---------eecCCCCCCcchhHHHHHHHHHhcCeEEEEE
Q 029472 91 DQ---------------YRDTSQIDFAFDDADIIEEGTLV---------AVIGRQQPKGDESIIQEKSVLNAADKLVFMV 146 (193)
Q Consensus 91 ~~---------------l~~~~~~D~af~gadgvd~~~~~---------~i~g~g~~~~~ea~~k~k~i~~~S~~~ilLa 146 (193)
.. +++ .++|++|+|+-.||. +++ .++|.|| +.- + +..|+|+|++.
T Consensus 78 t~~pg~~~f~sa~sf~~irG-Ghidv~vLGa~QVd~-~Gnlanw~Ipgk~vpGmGG-----Amd---l-~~gakkvii~m 146 (225)
T COG2057 78 TALPGASVFDSADSFAMIRG-GHIDVAVLGAAQVDE-YGNLANWMIPGKMVPGMGG-----AMD---L-VTGAKKVIVVM 146 (225)
T ss_pred EecCCceEEchHHHHHHHhC-CceEEEEecceeecc-cCceeeeeECCccccCCcc-----chh---h-hcCCcEEEEEe
Confidence 21 122 389999999999997 453 3556666 332 2 36789999999
Q ss_pred eCCCc
Q 029472 147 SENQY 151 (193)
Q Consensus 147 D~SKf 151 (193)
+|+|-
T Consensus 147 ~H~~k 151 (225)
T COG2057 147 EHTKK 151 (225)
T ss_pred eeecc
Confidence 99876
No 30
>PRK08334 translation initiation factor IF-2B subunit beta; Validated
Probab=96.95 E-value=0.016 Score=52.44 Aligned_cols=127 Identities=14% Similarity=0.047 Sum_probs=82.7
Q ss_pred HHHHHHHHhhcCCCCCEEEECc---------CHHHHHHHHHHHhHhhcCCCCCeE-EEcCc------HHH-HHHHHHCCC
Q 029472 26 FRAAKHTVDTYITSGMVVGLGS---------GQASAMAIEYMGRQLRAGALKDVI-GIPTS------VAS-ANEAAVAGI 88 (193)
Q Consensus 26 k~iaa~~A~~~I~dg~tI~Lds---------GsT~~~la~~L~~~~~~~~~~~lT-VVTnS------l~i-a~~l~~~~i 88 (193)
.+.|++.++++|++|+ |.-=+ ..|++.+.+...+. | +... +|+-| ... +.+|.+.|+
T Consensus 147 ~~~Ig~~g~~li~dg~-ILTHcnaG~LAt~~~gTal~vi~~A~~~---g--k~~~V~v~EtRP~~qG~rlta~eL~~~GI 220 (356)
T PRK08334 147 NLRMGHYGAEVLPEGN-VLTHCNAGSLATVHLGTVGAVLRVMHKD---G--TLKLLWVDETRPVLQGARLSAWEYHYDGI 220 (356)
T ss_pred HHHHHHHHHhhcCCCC-EEEecCcchhhhcccchHHHHHHHHHHc---C--CeEEEEECCCCchhhHHHHHHHHHHHCCC
Confidence 4556799999999999 54322 24677777777653 3 2444 44422 333 567888999
Q ss_pred cEEEcCC------C--CcccEEEeccccccCCCcceecCCCCCCcchhHHHHHHHHHhcCeEEEEEeCCCccCCC--CCc
Q 029472 89 PLDQYRD------T--SQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVSENQYKGVL--DGS 158 (193)
Q Consensus 89 ~v~~l~~------~--~~~D~af~gadgvd~~~~~~i~g~g~~~~~ea~~k~k~i~~~S~~~ilLaD~SKf~~~l--~~~ 158 (193)
++..+.+ + ..+|++++|+|.|-. ++++..--|+ ..+- .+.-++..-+|++|..+||.... |..
T Consensus 221 ~vtlI~Dsav~~~M~~~~Vd~VivGAd~I~~-nG~v~NKiGT-----y~lA-~~Ak~~~vPfyV~Ap~~t~d~~~~~~~~ 293 (356)
T PRK08334 221 PLKLISDNMAGFVMQQGKVDAIIVGADRIVA-NGDFANKIGT-----YTLA-VLAKEHGIPFFTVAPLSTIDMSLKSGKE 293 (356)
T ss_pred CEEEEehhHHHHHhhhcCCCEEEECccEEec-CCCEeehhhH-----HHHH-HHHHHhCCCEEEEcccCccCCCCCCCcc
Confidence 8775422 1 159999999999998 6766554444 3332 22234566899999999998655 345
Q ss_pred ccEEEec
Q 029472 159 VPVLVQP 165 (193)
Q Consensus 159 ~pvEv~p 165 (193)
+|+|-.+
T Consensus 294 i~iE~r~ 300 (356)
T PRK08334 294 IPIEERS 300 (356)
T ss_pred cccccCC
Confidence 6666543
No 31
>PRK06372 translation initiation factor IF-2B subunit delta; Provisional
Probab=96.70 E-value=0.03 Score=48.42 Aligned_cols=112 Identities=13% Similarity=0.027 Sum_probs=72.5
Q ss_pred HHHHHHhhcCCCCCEEEE-CcCHHHHHHHHHHHhHhhcCCCCCeEEEcCc------HHHHHHHHHCCCcEEEcCC-----
Q 029472 28 AAKHTVDTYITSGMVVGL-GSGQASAMAIEYMGRQLRAGALKDVIGIPTS------VASANEAAVAGIPLDQYRD----- 95 (193)
Q Consensus 28 iaa~~A~~~I~dg~tI~L-dsGsT~~~la~~L~~~~~~~~~~~lTVVTnS------l~ia~~l~~~~i~v~~l~~----- 95 (193)
.|++.|.++| +|++|.- +.|+|+..+...-.. ..-.+|+-| ...|..|...|+++..+.+
T Consensus 76 ~~~~~A~~~i-~~dvILT~s~S~~v~~~l~~~~~-------~~~V~v~ESrP~~eG~~~a~~L~~~GI~vtli~Dsa~~~ 147 (253)
T PRK06372 76 MAIEHAKPLF-NDSVIGTISSSQVLKAFISSSEK-------IKSVYILESRPMLEGIDMAKLLVKSGIDVVLLTDASMCE 147 (253)
T ss_pred HHHHHHHhhc-CCCEEEEeCCcHHHHHHHHhcCC-------CCEEEEecCCCchHHHHHHHHHHHCCCCEEEEehhHHHH
Confidence 3448899999 5575554 767777666533111 112344443 4566778888988765432
Q ss_pred -CCcccEEEeccccccCCCcceecCCCCCCcchhHHHHHHHHHhcCeEEEEEeCCCccCC
Q 029472 96 -TSQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVSENQYKGV 154 (193)
Q Consensus 96 -~~~~D~af~gadgvd~~~~~~i~g~g~~~~~ea~~k~k~i~~~S~~~ilLaD~SKf~~~ 154 (193)
+.++|++|+|+|.|.. +++++.--|+ ..+- .+.-+...-+|+++...||...
T Consensus 148 ~m~~vd~VlvGAd~V~~-nG~v~nkvGT-----~~~A-l~A~~~~vPv~V~~~s~Kf~~~ 200 (253)
T PRK06372 148 AVLNVDAVIVGSDSVLY-DGGLIHKNGT-----FPLA-LCARYLKKPFYSLTISMKIERN 200 (253)
T ss_pred HHHhCCEEEECccEEec-CCCEeehhhH-----HHHH-HHHHHcCCCEEEEeeccccCCC
Confidence 1369999999999998 6776654444 3332 2333556689999999999754
No 32
>TIGR02428 pcaJ_scoB_fam 3-oxoacid CoA-transferase, B subunit. Various members of this family are characterized as the B subunits of succinyl-CoA:3-ketoacid-CoA transferase (EC 2.8.3.5), beta-ketoadipate:succinyl-CoA transferase (EC 2.8.3.6), acetyl-CoA:acetoacetate CoA transferase (EC 2.8.3.8), and butyrate-acetoacetate CoA-transferase (EC 2.8.3.9). This represents a very distinct clade with strong sequence conservation within the larger family defined by Pfam model pfam01144. The A subunit represents a different clade in pfam01144.
Probab=96.55 E-value=0.014 Score=48.91 Aligned_cols=106 Identities=16% Similarity=0.161 Sum_probs=65.1
Q ss_pred HHHHHHHHhhcCCCCCEEEECcCHHHHHHHHHHHhHhhcCCCCCeEEEcCcHHHH-----------HHHHHCC-------
Q 029472 26 FRAAKHTVDTYITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASA-----------NEAAVAG------- 87 (193)
Q Consensus 26 k~iaa~~A~~~I~dg~tI~LdsGsT~~~la~~L~~~~~~~~~~~lTVVTnSl~ia-----------~~l~~~~------- 87 (193)
++.+|+.|+.+|+||++|.+|.| .-..++.+|.+. +++++.|=+=-+= -.+.+.+
T Consensus 3 ~~~Ia~~aA~~i~dg~~v~lGiG-iP~~va~~l~~~------~~l~l~~E~G~~g~~p~p~~~~~~~~l~~~g~~~~~~~ 75 (207)
T TIGR02428 3 RDQIAARAAQELKDGDYVNLGIG-IPTLVANYLPEG------IEVFLQSENGILGMGPAPEPGEEDPDLINAGKQPVTLL 75 (207)
T ss_pred HHHHHHHHHHhcCCCCEEEEeec-HHHHHHHHHhcC------CeEEEEEeCceecCccCCCCCCcCHHHHhCCCCceeec
Confidence 34456899999999999999999 667777888652 4788877652220 0233321
Q ss_pred --CcEEE-------cCCCCcccEEEeccccccCCCcce---------ecCCCCCCcchhHHHHHHHHHhcCeEEEEEeCC
Q 029472 88 --IPLDQ-------YRDTSQIDFAFDDADIIEEGTLVA---------VIGRQQPKGDESIIQEKSVLNAADKLVFMVSEN 149 (193)
Q Consensus 88 --i~v~~-------l~~~~~~D~af~gadgvd~~~~~~---------i~g~g~~~~~ea~~k~k~i~~~S~~~ilLaD~S 149 (193)
..++. +.. ..+|++|+|+-.||. .+++ +.|.|| .. -+ ...|+++|+...|+
T Consensus 76 ~g~~~~~~~~~f~~~~~-G~~dv~~lga~qvD~-~GnvN~~~~~~~~~~G~GG------~~--d~-~~~a~~~i~~~~~t 144 (207)
T TIGR02428 76 PGASYFDSADSFAMIRG-GHVDVAVLGALQVSE-NGDLANWMIPGKLVPGMGG------AM--DL-VAGAKRVIVAMEHT 144 (207)
T ss_pred cCcEEecChhheeeEcC-CceeEEEechHHhCC-CCcccccccCCccccccCc------hh--hh-hcCCCEEEEEEeeE
Confidence 11111 111 268999999999997 3421 122222 11 12 35678888887663
No 33
>COG1788 AtoD Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit [Lipid metabolism]
Probab=96.16 E-value=0.033 Score=47.26 Aligned_cols=49 Identities=18% Similarity=0.186 Sum_probs=37.0
Q ss_pred HHHHHHHHHhhcCCCCCEEEECcC---HHHHHHHHHHHhHhhcCCCCCeEEEcCcH
Q 029472 25 LFRAAKHTVDTYITSGMVVGLGSG---QASAMAIEYMGRQLRAGALKDVIGIPTSV 77 (193)
Q Consensus 25 kk~iaa~~A~~~I~dg~tI~LdsG---sT~~~la~~L~~~~~~~~~~~lTVVTnSl 77 (193)
||...+++|++.++|||||.++.= -+-..++.+|-++ | .++||+|+|.-
T Consensus 3 ~k~~s~~ea~~~~~dG~ti~~gGFg~~g~P~alI~ali~~---G-vkdLt~I~n~~ 54 (220)
T COG1788 3 KKLSSAEEAVANVKDGDTIMIGGFGTCGIPEALIHALIRQ---G-VKDLTVISNNA 54 (220)
T ss_pred chhhhHHHHHhhCCCCCEEEEccccccCChHHHHHHHHHc---C-CcceEEEecCC
Confidence 455556889999999999999643 2446777888764 3 25999999994
No 34
>KOG1465 consensus Translation initiation factor 2B, beta subunit (eIF-2Bbeta/GCD7) [Translation, ribosomal structure and biogenesis]
Probab=95.55 E-value=0.22 Score=44.38 Aligned_cols=128 Identities=13% Similarity=0.074 Sum_probs=85.6
Q ss_pred HHHHHhhcCCCCCEEE-ECcCHHHHHHHHHHHhHhhcCCCCCeEE-E----cCc--HHHHHHHHHCCCcEEEcCC-----
Q 029472 29 AKHTVDTYITSGMVVG-LGSGQASAMAIEYMGRQLRAGALKDVIG-I----PTS--VASANEAAVAGIPLDQYRD----- 95 (193)
Q Consensus 29 aa~~A~~~I~dg~tI~-LdsGsT~~~la~~L~~~~~~~~~~~lTV-V----TnS--l~ia~~l~~~~i~v~~l~~----- 95 (193)
|+..|.++|.++++|. +|++.|+..|.++=.++ | +..+| | +|. ...|..|++.|+++..+.+
T Consensus 152 Ia~Qa~ehihsnEviLT~g~SrTV~~FL~~A~kk---~--Rkf~viVaE~~p~~qgH~~Ak~la~~giettVI~daaVfA 226 (353)
T KOG1465|consen 152 IAVQAIEHIHSNEVILTLGSSRTVENFLKHAAKK---G--RKFRVIVAEGAPNNQGHELAKPLAQAGIETTVIPDAAVFA 226 (353)
T ss_pred HHHHHHHHhccCceEEecCccHHHHHHHHHHHhc---c--CceEEEEeecCCcccchHhhHHHHHcCCeeEEeccHHHHH
Confidence 6689999999999776 48889999987765543 1 23332 2 222 4556677788988555433
Q ss_pred -CCcccEEEeccccccCCCcceecCCCCCCcchhHHHHHHHHHhcCeEEEEEeCCCccCCCC--------CcccEEEecC
Q 029472 96 -TSQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVSENQYKGVLD--------GSVPVLVQPV 166 (193)
Q Consensus 96 -~~~~D~af~gadgvd~~~~~~i~g~g~~~~~ea~~k~k~i~~~S~~~ilLaD~SKf~~~l~--------~~~pvEv~p~ 166 (193)
+.+++++++|+..+-. ++|+....|+ ...-...-+++--+|++|.-.|+..-+= ...|=||.|+
T Consensus 227 ~MsrVnKVIigt~avl~-NGgl~~~~G~------~~vAlaAk~h~vPv~VlAp~yKLsPlyp~~~ds~~~f~s~~~il~~ 299 (353)
T KOG1465|consen 227 MMSRVNKVIIGTHAVLA-NGGLRAPSGV------HTVALAAKHHSVPVIVLAPMYKLSPLYPTNPDSFHEFRSPSEILPF 299 (353)
T ss_pred HhhhcceEEEEeeeEec-CCCeeccchH------HHHHHHHHhcCCcEEEecchhhcCCCCCCCHHHHHhcCCcccccCc
Confidence 2379999999999998 6876544443 2222333467778999999999876331 2355566655
Q ss_pred CH
Q 029472 167 NW 168 (193)
Q Consensus 167 ~~ 168 (193)
.-
T Consensus 300 ~e 301 (353)
T KOG1465|consen 300 SE 301 (353)
T ss_pred cc
Confidence 43
No 35
>TIGR03458 YgfH_subfam succinate CoA transferases. A closely related clade not included in this family are the Ach1p proteins of fungi which are acetyl-CoA hydrolases. This name has been applied to many of the proteins detected by this model, possibly erroneously.
Probab=95.11 E-value=0.14 Score=48.25 Aligned_cols=111 Identities=18% Similarity=0.173 Sum_probs=68.7
Q ss_pred HHHHhhcCCCCCEEEECcC---HHHHHHHHHHHhHhhc----CCCCCeEEEcCcHH---HHHHHHHCC-CcEE-------
Q 029472 30 KHTVDTYITSGMVVGLGSG---QASAMAIEYMGRQLRA----GALKDVIGIPTSVA---SANEAAVAG-IPLD------- 91 (193)
Q Consensus 30 a~~A~~~I~dg~tI~LdsG---sT~~~la~~L~~~~~~----~~~~~lTVVTnSl~---ia~~l~~~~-i~v~------- 91 (193)
+++|+++|+|||+|+++.. .+-..+.++|.++.++ |..+++|+++.... ....+...+ ++..
T Consensus 5 aeEAv~lIkDGdtI~iGgftg~~~P~aLl~ALa~r~~~~~~~g~p~~vtll~~~~~g~~~~~~l~~~g~v~~~is~~~sp 84 (485)
T TIGR03458 5 ADEAAALIKDGMTVGMSGFTPAGYPKAVPAALAKRAKAAHAAGEPFKITLLTGASTGPELDGVLAEADAIARRLPYQSDP 84 (485)
T ss_pred HHHHHHhCCCCCEEEECCCCCCCCHHHHHHHHHHHHHhhhccCCCccEEEEEecccCCcccccccccCCEEEEecccCCH
Confidence 4788899999999999963 5667788888766431 12237787773322 101111111 2211
Q ss_pred --------------E---------c-CCC-CcccEEEeccccccCCCcceecCCCCCCcchhHHHHHHHHHhcCeEEEEE
Q 029472 92 --------------Q---------Y-RDT-SQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMV 146 (193)
Q Consensus 92 --------------~---------l-~~~-~~~D~af~gadgvd~~~~~~i~g~g~~~~~ea~~k~k~i~~~S~~~ilLa 146 (193)
. + ... ..+|++++.++-.|. .+++..|... . .. +.++++|+++|+-+
T Consensus 85 ~~Rkai~~G~i~y~P~~ls~ip~~lrag~~g~~DValI~VSp~D~-~Gn~slg~s~-----~-~~-~~aa~aAk~VIvEV 156 (485)
T TIGR03458 85 TLRKKINAGEVMYVDMHLSHVAQQLRYGFLGKVDVAVIEAAAITE-DGRIIPTSSV-----G-NN-PTFLELADKVIVEV 156 (485)
T ss_pred HHHHHHHcCCCEEEeccHHHHHHHHHhcCCCCCCEEEEEEEeCCC-CceEEEeccc-----c-hH-HHHHHhCCEEEEEE
Confidence 1 1 111 268999999999998 5877665332 2 22 34458899999988
Q ss_pred eC
Q 029472 147 SE 148 (193)
Q Consensus 147 D~ 148 (193)
+.
T Consensus 157 N~ 158 (485)
T TIGR03458 157 NT 158 (485)
T ss_pred CC
Confidence 75
No 36
>PF04198 Sugar-bind: Putative sugar-binding domain; InterPro: IPR007324 This probable domain is found in bacterial transcriptional regulators such as DeoR and SorC. One of these proteins, Q8U7I7 from SWISSPROT, has an N-terminal helix-turn-helix IPR000792 from INTERPRO that binds to DNA. This domain is probably the ligand regulator binding region. SorC is regulated by sorbose and other members of this family are likely to be regulated by other sugar substrates.; GO: 0030246 carbohydrate binding; PDB: 3KV1_A 3EFB_C 2W48_A 3BXH_A 3BXE_A 2OKG_A 3BXF_A 3BXG_A 2R5F_A 2O0M_A ....
Probab=94.41 E-value=0.037 Score=47.51 Aligned_cols=78 Identities=17% Similarity=0.172 Sum_probs=50.5
Q ss_pred HHHHhhcCCCCCEEEECcCHHHHHHHHHHHhHhhcCCCCCeEEEc-----------CcHHHHHHHH-HCCCcEEEc----
Q 029472 30 KHTVDTYITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIP-----------TSVASANEAA-VAGIPLDQY---- 93 (193)
Q Consensus 30 a~~A~~~I~dg~tI~LdsGsT~~~la~~L~~~~~~~~~~~lTVVT-----------nSl~ia~~l~-~~~i~v~~l---- 93 (193)
|+.-.+++++|++|+++-|+|+.+++++|+.. ..++++||+ ++..++..++ ..|.+...+
T Consensus 43 A~~L~~~l~~~~~iGv~wG~Tl~~~~~~l~~~----~~~~~~vV~l~Gg~~~~~~~~~~~i~~~lA~~~g~~~~~l~aP~ 118 (255)
T PF04198_consen 43 AEYLSELLKDGDVIGVGWGRTLYAVANHLPPK----SLPNVTVVPLIGGVGNSNSYQANEIARRLAEKLGGKYYFLPAPA 118 (255)
T ss_dssp HHHHHHH--TTEEEEE-TSHHHHHHHHTS--S----SSSCEEEEESBSBTTTSSGGSHHHHHHHHHHHHTSEEE---SBS
T ss_pred HHHHHHhCCCCCEEEEcchHHHHHHHHhcCcc----CCCCcEEEECCCCCCCCCCcCHHHHHHHHHHHhCCcEEEEeCCc
Confidence 34445667899999999999999999999863 125889884 5666776664 345443332
Q ss_pred ---------------------CCCCcccEEEeccccccC
Q 029472 94 ---------------------RDTSQIDFAFDDADIIEE 111 (193)
Q Consensus 94 ---------------------~~~~~~D~af~gadgvd~ 111 (193)
....+.|+++.|...++.
T Consensus 119 ~~~s~~~~~~l~~~~~i~~~l~~~~~~dial~giG~~~~ 157 (255)
T PF04198_consen 119 FVDSPELRDALLAEPSIREVLDLARKADIALVGIGSPSS 157 (255)
T ss_dssp B-SSHHHHHHHHTSHHHHHHHHHHCT-SEEEEEEEEHHH
T ss_pred cCCCHHHHHHHHhChHHHHHHHHHHhCCEEEEecCCCCC
Confidence 011379999999988876
No 37
>PRK09920 acetyl-CoA:acetoacetyl-CoA transferase subunit alpha; Provisional
Probab=93.06 E-value=0.15 Score=43.18 Aligned_cols=43 Identities=16% Similarity=0.298 Sum_probs=33.0
Q ss_pred HHHHhhcCCCCCEEEECcCH---HHHHHHHHHHhHhhcCCCCCeEEEcCc
Q 029472 30 KHTVDTYITSGMVVGLGSGQ---ASAMAIEYMGRQLRAGALKDVIGIPTS 76 (193)
Q Consensus 30 a~~A~~~I~dg~tI~LdsGs---T~~~la~~L~~~~~~~~~~~lTVVTnS 76 (193)
++.|+++|+|||+|++++-. +-..+.+.|.++ + .++||+|.|+
T Consensus 8 ~~eAv~~I~DG~ti~~gGf~~~~~P~ali~al~r~---~-~~dLtli~~~ 53 (219)
T PRK09920 8 LQDATGFFRDGMTIMVGGFMGIGTPSRLVEALLES---G-VRDLTLIAND 53 (219)
T ss_pred HHHHHhcCCCCCEEEECcccCcCCHHHHHHHHHhc---C-CCceEEEEeC
Confidence 47788899999999997653 567777888754 2 2599999854
No 38
>COG2390 DeoR Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]
Probab=93.05 E-value=0.13 Score=45.87 Aligned_cols=78 Identities=17% Similarity=0.220 Sum_probs=52.2
Q ss_pred HHHHhhcCCCCCEEEECcCHHHHHHHHHHHhHhhcCCCCCeEEEc------------CcHHHHHHHH-HCCCcEEEc---
Q 029472 30 KHTVDTYITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIP------------TSVASANEAA-VAGIPLDQY--- 93 (193)
Q Consensus 30 a~~A~~~I~dg~tI~LdsGsT~~~la~~L~~~~~~~~~~~lTVVT------------nSl~ia~~l~-~~~i~v~~l--- 93 (193)
|+.-.+.|++||+|+++-|+|+..++++|+... .++++||+ +.-.++..++ ..+.+-..+
T Consensus 105 A~~l~~~l~~gdvigV~wGrTv~a~~~~l~~~~----~~~~~vV~l~GG~~~~~~~~~~~~~~~~~A~k~~~~~~~l~aP 180 (321)
T COG2390 105 AQYLESLLKPGDVIGVGWGRTLSAVVDNLPPAP----LRDVKVVQLTGGVGHADGSYNANTIALRLAEKLGAESYLLPAP 180 (321)
T ss_pred HHHHHHhCCCCCEEEEeccHHHHHHHHhcCcCc----cCCeEEEECCCCCCCCccccCHHHHHHHHHHHhCCcEEeeecC
Confidence 344456789999999999999999999998541 24777774 3344444443 334332111
Q ss_pred ----------------------CCCCcccEEEeccccccC
Q 029472 94 ----------------------RDTSQIDFAFDDADIIEE 111 (193)
Q Consensus 94 ----------------------~~~~~~D~af~gadgvd~ 111 (193)
....+.|++|.|+..+.+
T Consensus 181 ~~~~s~e~r~~l~~e~~v~~vl~~~~~ad~alvGIG~~~~ 220 (321)
T COG2390 181 LVASSPELREALLQEPSVREVLDLARSADLALVGIGSLSA 220 (321)
T ss_pred ccCCCHHHHHHHHhCcHHHHHHHHHHhCCEEEEecCCCcc
Confidence 011269999999999987
No 39
>PF02550 AcetylCoA_hydro: Acetyl-CoA hydrolase/transferase N-terminal domain; InterPro: IPR003702 This family contains several enzymes which take part in pathways involving acetyl-CoA. Acetyl-CoA hydrolase 3.1.2.1 from EC from yeast catalyses the formation of acetate from acetyl-CoA, CoA transferase (CAT1) 2.8.3 from EC produces succinyl-CoA, and acetate-CoA transferase 2.8.3.8 from EC utilises acyl-CoA and acetate to form acetyl-CoA.; GO: 0003824 catalytic activity, 0006084 acetyl-CoA metabolic process; PDB: 2NVV_C 2G39_A 3D3U_A 3S8D_B 3QLI_B 3QLK_B 3GK7_B 3QDQ_A 3EH7_A 2OAS_A ....
Probab=92.58 E-value=0.3 Score=40.21 Aligned_cols=50 Identities=18% Similarity=0.238 Sum_probs=32.6
Q ss_pred cccEEEeccccccCCCcceecCCCCCCcchhHHHHHHHHHhcCeEEEEEeCCCccCCCC
Q 029472 98 QIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVSENQYKGVLD 156 (193)
Q Consensus 98 ~~D~af~gadgvd~~~~~~i~g~g~~~~~ea~~k~k~i~~~S~~~ilLaD~SKf~~~l~ 156 (193)
.+|++++.++..|. ++.+..|-+ ....+.+++.|+.+|+-+.. +.-..+|
T Consensus 124 ~~Dvaii~vSp~De-~Gy~slG~s-------~~~~~~~ie~A~~vI~eVN~-~~P~~~G 173 (198)
T PF02550_consen 124 PIDVAIIQVSPMDE-HGYFSLGTS-------VDYTKAAIEQAKKVIVEVNP-NMPRTFG 173 (198)
T ss_dssp H-SEEEEEECEE-T-TSEEECTTB-------HBTHHHHHHHTSEEEEEEET-TSTS-EE
T ss_pred CCCEEEEEecCcCC-CCCEeecHH-------HHhHHHHHhcCCeEEEEcCC-CCCCCCC
Confidence 48999999999998 677765522 22235666899999998874 3333444
No 40
>TIGR01584 citF citrate lyase, alpha subunit. This is a model of the alpha subunit of the holoenzyme citrate lyase (EC 4.1.3.6) composed of alpha (EC 2.8.3.10), beta (EC 4.1.3.34), and acyl carrier protein subunits in a stoichiometric relationship of 6:6:6. Citrate lyase is an enzyme which converts citrate to oxaloacetate. In bacteria, this reaction is involved in citrate fermentation. The alpha subunit catalyzes the reaction Acetyl-CoA + citrate = acetate + (3S)-citryl-CoA. The seed contains an experimentally characterized member from Lactococcus lactis subsp. lactis. The model covers both Gram positive and Gram negative bacteria. It is quite robust with queries scoring either quite well or quite poorly against the model. There are currently no hits in between the noise cutoff and trusted cutoff.
Probab=92.36 E-value=0.46 Score=44.81 Aligned_cols=103 Identities=21% Similarity=0.242 Sum_probs=65.0
Q ss_pred cCCCCCEEEE-----CcCHHHHHHHHHHHhHhhcCCCCCeEEEcCcHHHHHH-HH---HCCC-c-E--------------
Q 029472 36 YITSGMVVGL-----GSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANE-AA---VAGI-P-L-------------- 90 (193)
Q Consensus 36 ~I~dg~tI~L-----dsGsT~~~la~~L~~~~~~~~~~~lTVVTnSl~ia~~-l~---~~~i-~-v-------------- 90 (193)
=++|||||-. ++=-....+.+.+.+. | ++|||+-+.|+.-++. |. +.|. + +
T Consensus 39 gl~dgmtisfhhh~r~gd~v~n~v~~~~~~~---g-~k~l~~~~ssl~~~h~~lv~~i~~g~vt~i~~sg~~g~~~~~is 114 (492)
T TIGR01584 39 GLKDGMTISFHHHFREGDYVVNMVMRIIADM---G-FKDLTLAPSSLTSVHDPLVEHIKKGVVTGITSSGLRGTLGDEIS 114 (492)
T ss_pred CCcCCcEEEeeccccCccHHHHHHHHHHHHc---C-cCCcEEecccCcchhHHHHHHHhcCeEEEEEeCCcCchHHHHHh
Confidence 3799999976 3345556666677654 3 4799999999876653 32 2331 1 1
Q ss_pred --------EE---------c-CCCCcccEEEeccccccCCCccee--cC--CCCCCcchhHHHHHHHHHhcCeEEEEEeC
Q 029472 91 --------DQ---------Y-RDTSQIDFAFDDADIIEEGTLVAV--IG--RQQPKGDESIIQEKSVLNAADKLVFMVSE 148 (193)
Q Consensus 91 --------~~---------l-~~~~~~D~af~gadgvd~~~~~~i--~g--~g~~~~~ea~~k~k~i~~~S~~~ilLaD~ 148 (193)
++ + .+..++|+||+++.--|. .+++- .| .++ ..-.....+++|+++|+.+|.
T Consensus 115 ~g~l~~p~~~~shggr~r~i~~g~l~iDVAfI~Vsp~D~-~Gn~sg~~G~s~~g-----slgya~~dA~~A~kVIaevn~ 188 (492)
T TIGR01584 115 KGILKKPVIIRSHGGRARAIETGELHIDVAFLGVPCCDE-MGNANGMTGKSPCG-----SLGYAIVDAQYADKVVAITDS 188 (492)
T ss_pred cCCCCCCeEEecCCcHHHHHhcCCCCCCEEEEeCCCccc-CCCCcccCCCcccC-----ccchhHHHHHhCCEEEEEECC
Confidence 10 1 111379999999999998 46642 11 122 122234556889999999985
No 41
>PRK15418 transcriptional regulator LsrR; Provisional
Probab=92.21 E-value=0.2 Score=44.41 Aligned_cols=42 Identities=10% Similarity=0.246 Sum_probs=31.4
Q ss_pred HHHhhcCCCCCEEEECcCHHHHHHHHHHHhHhhcCCCCCeEEEcC
Q 029472 31 HTVDTYITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPT 75 (193)
Q Consensus 31 ~~A~~~I~dg~tI~LdsGsT~~~la~~L~~~~~~~~~~~lTVVTn 75 (193)
+.-.+++++|++|+++-|+|+..+++++.... ..++++||+-
T Consensus 107 ~~L~~~l~~~~~IGvswG~Tl~~~~~~l~~~~---~~~~~~vV~l 148 (318)
T PRK15418 107 HMLMSLLQPQQLLAVGFGEATMNTLQHLSGFI---SSQQIRLVTL 148 (318)
T ss_pred HHHHHhcCCCCEEEEcchHHHHHHHHhccccC---CCCCCEEEEc
Confidence 33345678999999999999999999996310 1258898864
No 42
>TIGR02429 pcaI_scoA_fam 3-oxoacid CoA-transferase, A subunit. Various members of this family are characterized as the A subunits of succinyl-CoA:3-ketoacid-CoA transferase (EC 2.8.3.5), beta-ketoadipate:succinyl-CoA transferase (EC 2.8.3.6), acetyl-CoA:acetoacetate CoA transferase (EC 2.8.3.8), and butyrate-acetoacetate CoA-transferase (EC 2.8.3.9). This represents a very distinct clade with strong sequence conservation within the larger family defined by Pfam model pfam01144. The B subunit represents a different clade in pfam01144, described by TIGR02428. The two are found in general as tandem genes and occasionally as a fusion.
Probab=91.77 E-value=0.25 Score=41.85 Aligned_cols=42 Identities=17% Similarity=0.181 Sum_probs=31.8
Q ss_pred HHHhhcCCCCCEEEECcC---HHHHHHHHHHHhHhhcCCCCCeEEEcCc
Q 029472 31 HTVDTYITSGMVVGLGSG---QASAMAIEYMGRQLRAGALKDVIGIPTS 76 (193)
Q Consensus 31 ~~A~~~I~dg~tI~LdsG---sT~~~la~~L~~~~~~~~~~~lTVVTnS 76 (193)
+.|+++|+|||+|.+++- .+-..++++|.+. + .++||+|.|+
T Consensus 10 ~eAv~~I~DG~ti~~gGf~~~~~P~ali~~l~r~---~-~~~Ltlv~~~ 54 (222)
T TIGR02429 10 AEAVSVIPDGATIMIGGFGTAGQPFELIDALIDT---G-AKDLTIVSNN 54 (222)
T ss_pred HHHHhhCCCCCEEEECCcCCccCcHHHHHHHHhc---C-CCCcEEEecC
Confidence 667789999999999874 3456777777653 2 3699999975
No 43
>PF04223 CitF: Citrate lyase, alpha subunit (CitF); InterPro: IPR006472 These sequences, from both Gram-positive and Gram-negative bacteria, represent the alpha subunit of the holoenzyme citrate lyase composed of alpha (2.8.3.10 from EC), beta, and acyl carrier protein subunits in a stoichiometric relationship of 6:6:6. Citrate lyase is an enzyme which converts citrate to oxaloacetate. In bacteria, this reaction is involved in citrate fermentation. The alpha subunit catalyzes the reaction Acetyl-CoA + citrate = acetate + (3S)-citryl-CoA. The protein from Lactococcus lactis subsp. lactis (Streptococcus lactis) has been experimentally characterised [].; GO: 0008814 citrate CoA-transferase activity, 0006084 acetyl-CoA metabolic process, 0005737 cytoplasm, 0009346 citrate lyase complex; PDB: 2HJ0_B 1XR4_B.
Probab=90.94 E-value=1.2 Score=41.47 Aligned_cols=102 Identities=19% Similarity=0.262 Sum_probs=54.1
Q ss_pred cCCCCCEEEE-----CcCHHHHHHHHHHHhHhhcCCCCCeEEEcCcHHHHHH-H---HHCCC-c-EE-------------
Q 029472 36 YITSGMVVGL-----GSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANE-A---AVAGI-P-LD------------- 91 (193)
Q Consensus 36 ~I~dg~tI~L-----dsGsT~~~la~~L~~~~~~~~~~~lTVVTnSl~ia~~-l---~~~~i-~-v~------------- 91 (193)
=++|||||-. ++=-.+..+.+.+.+. | +++||+-++|+.-++. + .+.|. + +.
T Consensus 16 glkDGMTISFHHH~RnGD~V~nmVm~~i~~m---G-iKdLtiaaSSl~~~h~~lv~~I~~GvVt~I~tsg~rG~lg~aiS 91 (466)
T PF04223_consen 16 GLKDGMTISFHHHLRNGDYVLNMVMDEIAEM---G-IKDLTIAASSLFPVHDPLVEHIKSGVVTRIETSGMRGPLGEAIS 91 (466)
T ss_dssp T--TT-EEEE--TTGGGB-HHHHHHHHHHHT---T---SEEEEES---GGGGGHHHHHHTTSEEEEEESEEHHHHHHHHH
T ss_pred CCcCCcEEEeehhccCccHHHHHHHHHHHHc---C-CCCcEEecccchhhHHHHHHHHhcCeeeEEEeCCcCchHHHHHh
Confidence 4799999987 3334555555666654 3 4699999999987652 2 23342 1 11
Q ss_pred ---------E-----------cCCCCcccEEEeccccccCCCcceecCCCCCC---c-chhHHHHHHHHHhcCeEEEEEe
Q 029472 92 ---------Q-----------YRDTSQIDFAFDDADIIEEGTLVAVIGRQQPK---G-DESIIQEKSVLNAADKLVFMVS 147 (193)
Q Consensus 92 ---------~-----------l~~~~~~D~af~gadgvd~~~~~~i~g~g~~~---~-~ea~~k~k~i~~~S~~~ilLaD 147 (193)
+ -++. ++|+||+++..-|. -+| ..|.+|.. . -=+.+ =++.|++++++.|
T Consensus 92 ~G~l~~Pvi~rSHGGR~raIe~Ge~-~IDVAFi~AP~~D~-~GN-~nG~~G~saCGsLGYa~~----DA~yA~~VV~iTD 164 (466)
T PF04223_consen 92 EGKLKKPVIIRSHGGRARAIESGEL-HIDVAFIAAPSCDE-YGN-ANGVGGKSACGSLGYAMV----DAQYADKVVAITD 164 (466)
T ss_dssp CT--SS-EEE-BHHHHHHHHHCTSS---SEEEEEESEEET-TS--EESSSSSS--S--CCHHH----HHHH-SEEEEEES
T ss_pred CCCCCCCEEEeCCCCchhheecCCc-ceEEEEEcCCcccc-ccC-cCCCcCCccccccccchh----hHHhcCcEEEEec
Confidence 0 1344 89999999999887 354 34555421 1 11222 2468999999999
Q ss_pred C
Q 029472 148 E 148 (193)
Q Consensus 148 ~ 148 (193)
.
T Consensus 165 ~ 165 (466)
T PF04223_consen 165 N 165 (466)
T ss_dssp S
T ss_pred C
Confidence 5
No 44
>COG0182 Predicted translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=90.17 E-value=5.1 Score=36.12 Aligned_cols=126 Identities=18% Similarity=0.128 Sum_probs=80.7
Q ss_pred HHHHHHHhhcCCCCCEEE--ECcCH-------HHHHHHHHHHhHhhcCCCCCeEEEcC--------cHHHHHHHHHCCCc
Q 029472 27 RAAKHTVDTYITSGMVVG--LGSGQ-------ASAMAIEYMGRQLRAGALKDVIGIPT--------SVASANEAAVAGIP 89 (193)
Q Consensus 27 ~iaa~~A~~~I~dg~tI~--LdsGs-------T~~~la~~L~~~~~~~~~~~lTVVTn--------Sl~ia~~l~~~~i~ 89 (193)
+.+++.-++++++|++|. .-+|+ |++-.++..... | +++.|+.. |=-++-+|.+.||+
T Consensus 137 ~~iG~~G~~ll~~~~~VLThCNaGaLAt~~~GTAlgviR~a~~~---g--k~i~v~a~ETRP~lQGARLTawEL~~~GIp 211 (346)
T COG0182 137 RAIGENGAELLPDGDTVLTHCNAGALATVGYGTALGVIRSAHEE---G--KDIRVFADETRPYLQGARLTAWELVQDGIP 211 (346)
T ss_pred HHHHHHHHHhhccCCeEEeeecCCceeecCccchHHHHHHHHHC---C--CeeEEEeCCCccccccceeeHHHHhhcCCc
Confidence 456789999999999987 22332 455666666542 3 47777765 33456688899998
Q ss_pred EEEcCCC--------CcccEEEeccccccCCCcceecCCCCCCcchhHHHHHHHH-HhcCeEEEEEeCCCccCCCC--Cc
Q 029472 90 LDQYRDT--------SQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVL-NAADKLVFMVSENQYKGVLD--GS 158 (193)
Q Consensus 90 v~~l~~~--------~~~D~af~gadgvd~~~~~~i~g~g~~~~~ea~~k~k~i~-~~S~~~ilLaD~SKf~~~l~--~~ 158 (193)
+..+.+. ..+|+++.|+|-+.. ++..-.=-|+ . ...+++ ++.-.+|+.|..|-|..... ..
T Consensus 212 vtLItD~aag~~M~~g~Id~viVGADRI~~-nGdvaNKIGT-----Y--~lAvlAk~~gIPFyVaAP~sTiD~~~~~G~~ 283 (346)
T COG0182 212 VTLITDNAAGHLMQQGMIDAVIVGADRIAA-NGDVANKIGT-----Y--QLAVLAKHHGIPFYVAAPLSTIDFELKSGED 283 (346)
T ss_pred eEEEeccHHHHHHHhCCCcEEEEccceeec-CCcchhhhhH-----H--HHHHHHHHcCCCeEEEcccCccccccCCCCc
Confidence 7654221 259999999999987 4422111111 1 112222 34457999999999998664 46
Q ss_pred ccEEEec
Q 029472 159 VPVLVQP 165 (193)
Q Consensus 159 ~pvEv~p 165 (193)
+|+|=-+
T Consensus 284 I~IEER~ 290 (346)
T COG0182 284 IPIEERD 290 (346)
T ss_pred cceeecC
Confidence 8887544
No 45
>KOG1467 consensus Translation initiation factor 2B, delta subunit (eIF-2Bdelta/GCD2) [Translation, ribosomal structure and biogenesis]
Probab=90.15 E-value=3.2 Score=39.28 Aligned_cols=116 Identities=15% Similarity=0.072 Sum_probs=69.3
Q ss_pred HHHHHhhcCCCCCEEEE-CcCHHHHHHHHHHHhHhhcCCCCCeEEEcCc-----HHHHHHHHHCCCcE--EEcCCC----
Q 029472 29 AKHTVDTYITSGMVVGL-GSGQASAMAIEYMGRQLRAGALKDVIGIPTS-----VASANEAAVAGIPL--DQYRDT---- 96 (193)
Q Consensus 29 aa~~A~~~I~dg~tI~L-dsGsT~~~la~~L~~~~~~~~~~~lTVVTnS-----l~ia~~l~~~~i~v--~~l~~~---- 96 (193)
|-+.|..-|+|||+|.- |+++++..+..+=.+. +..-++.||-.- -.....|-..|++. ..+...
T Consensus 349 I~q~a~~KI~dgdviltyg~s~vV~~ill~A~~~---~k~frVvVVDSRP~~EG~~~lr~Lv~~GinctYv~I~a~syim 425 (556)
T KOG1467|consen 349 ISQHAVTKIQDGDVLLTYGSSSVVNMILLEAKEL---GKKFRVVVVDSRPNLEGRKLLRRLVDRGINCTYVLINAASYIM 425 (556)
T ss_pred HHHHHHHHhhcCCEEEEecchHHHHHHHHHHHHh---CcceEEEEEeCCCCcchHHHHHHHHHcCCCeEEEEehhHHHHH
Confidence 33778899999998876 8888888776664332 110134444221 12223445677663 222221
Q ss_pred CcccEEEeccccccCCCcceecCCCCCCcchhHHHHHHHHHhcC-eEEEEEeCCCccCCC
Q 029472 97 SQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAAD-KLVFMVSENQYKGVL 155 (193)
Q Consensus 97 ~~~D~af~gadgvd~~~~~~i~g~g~~~~~ea~~k~k~i~~~S~-~~ilLaD~SKf~~~l 155 (193)
..+++.|+||..+-. ++.+...-|+ +.+ .|++.+.. =|++.|.+-||-++.
T Consensus 426 ~evtkvfLGahails-NG~vysR~GT-----a~v--alvAna~nVPVlVCCE~yKF~eRv 477 (556)
T KOG1467|consen 426 LEVTKVFLGAHAILS-NGAVYSRVGT-----ACV--ALVANAFNVPVLVCCEAYKFHERV 477 (556)
T ss_pred Hhcceeeechhhhhc-Ccchhhhcch-----HHH--HHHhcccCCCEEEEechhhhhhhh
Confidence 268999999999987 5555443333 443 45533332 467778888998754
No 46
>COG3051 CitF Citrate lyase, alpha subunit [Energy production and conversion]
Probab=88.22 E-value=1.2 Score=41.03 Aligned_cols=104 Identities=19% Similarity=0.284 Sum_probs=61.9
Q ss_pred CCCCCEEEE-----CcCHHHHHHHHHHHhHhhcCCCCCeEEEcCcHHHHHH-HH---HCCC--cEE--------------
Q 029472 37 ITSGMVVGL-----GSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANE-AA---VAGI--PLD-------------- 91 (193)
Q Consensus 37 I~dg~tI~L-----dsGsT~~~la~~L~~~~~~~~~~~lTVVTnSl~ia~~-l~---~~~i--~v~-------------- 91 (193)
++|||||-+ ++-.++..+-+.|.+. | .+|||+-+.|+.-... |- ++|. +++
T Consensus 62 lkdGMTiSFHH~fR~GD~vvN~Vm~~Ia~m---G-fKnLtlA~SSl~~~h~pliehIknGVVt~I~sSGlRg~lg~~IS~ 137 (513)
T COG3051 62 LKDGMTISFHHAFRGGDLVVNMVMDVIAKM---G-FKNLTLASSSLSDCHAPLVEHIKNGVVTRIYSSGLRGPLGEEISR 137 (513)
T ss_pred ccCCeEEEeeehhcCCceeHHHHHHHHHHh---C-ccceeeccchhhhhhHHHHHHHhcCEeeeEeeccccchHHHHHhh
Confidence 799999965 4446666666667654 3 3699999999877652 21 2332 111
Q ss_pred -------------------EcCCCCcccEEEeccccccCCCcceecCCCC-CCcchhHHHHHHHHHhcCeEEEEEeC
Q 029472 92 -------------------QYRDTSQIDFAFDDADIIEEGTLVAVIGRQQ-PKGDESIIQEKSVLNAADKLVFMVSE 148 (193)
Q Consensus 92 -------------------~l~~~~~~D~af~gadgvd~~~~~~i~g~g~-~~~~ea~~k~k~i~~~S~~~ilLaD~ 148 (193)
.-+++ ++|.||+|+-..|. +|-..|..| ...- .+=.-++=++.|+++++|.|.
T Consensus 138 Gll~~PV~i~SHGGRv~~i~sGel-~IDvAFlgvP~cDe--~GNaNG~~GKa~cG-SlGYA~vDA~yAd~VV~lTe~ 210 (513)
T COG3051 138 GLLAEPVQIHSHGGRVHLVQSGEL-HIDVAFLGVPSCDE--FGNANGFTGKACCG-SLGYAMVDAQYADQVVMLTEE 210 (513)
T ss_pred hHhhCCeEEeccCceEEEeecCce-eEEEEEecCCChhh--hcCcCCCcCccccc-cccceeechhhcceEEEehhh
Confidence 11333 89999999776664 322233333 1110 111112335789999999885
No 47
>PF01144 CoA_trans: Coenzyme A transferase; InterPro: IPR004165 Coenzyme A (CoA) transferases belong to an evolutionary conserved [, ] family of enzymes catalyzing the reversible transfer of CoA from one carboxylic acid to another. They have been identified in many prokaryotes and in mammalian tissues. The bacterial enzymes are heterodimer of two subunits (A and B) of about 25 Kd each while eukaryotic SCOT consist of a single chain which is colinear with the two bacterial subunits.; GO: 0008410 CoA-transferase activity, 0008152 metabolic process; PDB: 3DLX_C 1K6D_A 3OXO_H 1M3E_D 3K6M_C 2NRC_A 1OOY_B 1O9L_C 1OOZ_A 1OPE_B ....
Probab=86.51 E-value=1.4 Score=36.31 Aligned_cols=43 Identities=23% Similarity=0.347 Sum_probs=25.2
Q ss_pred HHHhhcCCCCCEEEEC----cCHHHHHHHHHHHhHhhcCCCCCeEEEcCcHH
Q 029472 31 HTVDTYITSGMVVGLG----SGQASAMAIEYMGRQLRAGALKDVIGIPTSVA 78 (193)
Q Consensus 31 ~~A~~~I~dg~tI~Ld----sGsT~~~la~~L~~~~~~~~~~~lTVVTnSl~ 78 (193)
++++++|+|||+|+++ +| +-..++.+|.++.. ++++++++.--
T Consensus 6 eAva~~I~dG~~v~~GG~~~~~-~P~al~~~l~r~~~----~~l~~~~~~~g 52 (217)
T PF01144_consen 6 EAVARLIRDGDTVAVGGFGSSG-IPMALVRELARQGH----RDLTLVISEAG 52 (217)
T ss_dssp HHHTCT--TTEEEEE-SBTTBT-HHHHHHHHHHHHTT----TSEEEEESTTT
T ss_pred HHHhccCCCCCEEEECCCcccC-cHHHHHHHHHhcCC----CCcEEEEeCCc
Confidence 4455599999999999 66 44466677765421 36666555443
No 48
>COG0427 ACH1 Acetyl-CoA hydrolase [Energy production and conversion]
Probab=84.48 E-value=2.4 Score=40.10 Aligned_cols=117 Identities=22% Similarity=0.252 Sum_probs=68.3
Q ss_pred HHHHHHHHHHhhcCCCCCEEEEC-cC-HHHHHHHHHHHhHhhc--CCCC--CeEE-EcCcHHH--HHHHHHCC-C-----
Q 029472 24 VLFRAAKHTVDTYITSGMVVGLG-SG-QASAMAIEYMGRQLRA--GALK--DVIG-IPTSVAS--ANEAAVAG-I----- 88 (193)
Q Consensus 24 ekk~iaa~~A~~~I~dg~tI~Ld-sG-sT~~~la~~L~~~~~~--~~~~--~lTV-VTnSl~i--a~~l~~~~-i----- 88 (193)
+||-+=+.+|+.+|++|++|+++ +| -+-..+.++|.++.+. +.++ .++. .+-|+.. -..+...+ +
T Consensus 13 ~k~~~t~~Eaa~~i~~g~~lg~sft~ag~pkalp~aLA~r~~~~~~~~~~l~i~~~~gas~~~~~~~~~~~a~~~~~r~p 92 (501)
T COG0427 13 KKKLITPEEAASLIKDGDHLGMSFTGAGEPKALPEALARRAEANHGELKDLRVLLFTGASIGADEDLKLAEAGEVIRRAP 92 (501)
T ss_pred hhhcCCHHHHHHhhcCCCEEeecccCCCCchhhHHHHHHHHHhcccccCceEEEEEeccccCcchhhhhhcccchhhhCc
Confidence 44443458999999999999998 44 4667777777765221 1121 2333 3444442 22222222 1
Q ss_pred -cEE------------------------EcC--CCCcccEEEeccccccCCCcceecCCCCCCcchhHHHHHHHHHhcCe
Q 029472 89 -PLD------------------------QYR--DTSQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADK 141 (193)
Q Consensus 89 -~v~------------------------~l~--~~~~~D~af~gadgvd~~~~~~i~g~g~~~~~ea~~k~k~i~~~S~~ 141 (193)
.+. .+. .+..+|++++-+..++. ++.++-|-+- ...+ . .+..|++
T Consensus 93 ~q~~~~~Rk~iN~g~~~f~d~~ls~~~~~~~~~~~~~iDia~ie~s~i~~-~G~~i~g~sv-----g~~~-~-~~~~A~k 164 (501)
T COG0427 93 YQVYSPVRKAINEGGVDFVDQHLSEVPQLLRKGFLGDIDIALIEASAIDE-HGYIIPGTSV-----GNSK-S-WAEGAEK 164 (501)
T ss_pred cccCHHHHHHHhccCcchhhhhHhhhhHhhcccccCCCcEEEEEeccccC-CceEeecccc-----CCcH-H-HHhhccE
Confidence 110 011 12248999999999999 5777765443 2332 2 3478999
Q ss_pred EEEEEeC
Q 029472 142 LVFMVSE 148 (193)
Q Consensus 142 ~ilLaD~ 148 (193)
||+-+..
T Consensus 165 VIveVN~ 171 (501)
T COG0427 165 VIVEVNK 171 (501)
T ss_pred EEEEhhc
Confidence 9887664
No 49
>cd00458 SugarP_isomerase SugarP_isomerase: Sugar Phosphate Isomerase family; includes type A ribose 5-phosphate isomerase (RPI_A), glucosamine-6-phosphate (GlcN6P) deaminase, and 6-phosphogluconolactonase (6PGL). RPI catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate, the first step of the non-oxidative branch of the pentose phosphate pathway. GlcN6P deaminase catalyzes the reversible conversion of GlcN6P to D-fructose-6-phosphate (Fru6P) and ammonium, the last step of the metabolic pathway of N-acetyl-D-glucosamine-6-phosphate. 6PGL converts 6-phosphoglucono-1,5-lactone to 6-phosphogluconate, the second step of the oxidative phase of the pentose phosphate pathway.
Probab=79.12 E-value=8.5 Score=30.71 Aligned_cols=40 Identities=35% Similarity=0.771 Sum_probs=27.7
Q ss_pred CCCCEEEECcCHHHHHHHHHHHhHhhcCCCCCeEEEcCcH
Q 029472 38 TSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSV 77 (193)
Q Consensus 38 ~dg~tI~LdsGsT~~~la~~L~~~~~~~~~~~lTVVTnSl 77 (193)
++..+|+|.+|+|...+-+.|.+....+..++++++..+-
T Consensus 19 ~~~~~i~lsgGsTp~~~y~~L~~~~~~~~w~~v~~f~~DE 58 (169)
T cd00458 19 KDDMVIGLGTGSTPAYFYKLLGEKLKRGEISDIVGFPTDE 58 (169)
T ss_pred CCCEEEEECCCccHHHHHHHHHhhhhhCCccceEEEECcc
Confidence 3455899999999999999987542211123677776666
No 50
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=77.54 E-value=9.7 Score=27.58 Aligned_cols=46 Identities=24% Similarity=0.268 Sum_probs=38.1
Q ss_pred EEEECcCHHHHHHHHHHHhHhhcCCCCCeEEEcCcHHHHHHHHHCCCcEEE
Q 029472 42 VVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLDQ 92 (193)
Q Consensus 42 tI~LdsGsT~~~la~~L~~~~~~~~~~~lTVVTnSl~ia~~l~~~~i~v~~ 92 (193)
+|.+|.|.....+++.|.+. + .++++|...-.....+...+..++.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~---~--~~vvvid~d~~~~~~~~~~~~~~i~ 46 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEG---G--IDVVVIDRDPERVEELREEGVEVIY 46 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHT---T--SEEEEEESSHHHHHHHHHTTSEEEE
T ss_pred eEEEcCCHHHHHHHHHHHhC---C--CEEEEEECCcHHHHHHHhccccccc
Confidence 57899999999999999874 1 2799999999999988888877665
No 51
>TIGR01584 citF citrate lyase, alpha subunit. This is a model of the alpha subunit of the holoenzyme citrate lyase (EC 4.1.3.6) composed of alpha (EC 2.8.3.10), beta (EC 4.1.3.34), and acyl carrier protein subunits in a stoichiometric relationship of 6:6:6. Citrate lyase is an enzyme which converts citrate to oxaloacetate. In bacteria, this reaction is involved in citrate fermentation. The alpha subunit catalyzes the reaction Acetyl-CoA + citrate = acetate + (3S)-citryl-CoA. The seed contains an experimentally characterized member from Lactococcus lactis subsp. lactis. The model covers both Gram positive and Gram negative bacteria. It is quite robust with queries scoring either quite well or quite poorly against the model. There are currently no hits in between the noise cutoff and trusted cutoff.
Probab=75.85 E-value=4 Score=38.59 Aligned_cols=38 Identities=13% Similarity=0.197 Sum_probs=33.0
Q ss_pred HHHHHHHHHHhhcC------CCCCEEEECcCHHHHHHHHHHHhH
Q 029472 24 VLFRAAKHTVDTYI------TSGMVVGLGSGQASAMAIEYMGRQ 61 (193)
Q Consensus 24 ekk~iaa~~A~~~I------~dg~tI~LdsGsT~~~la~~L~~~ 61 (193)
++.+.||+.++++| +||.++=+|.|.....++++|.++
T Consensus 230 p~e~~IA~~vA~lI~~s~~~~DG~tlQ~GiGgip~AV~~~L~~~ 273 (492)
T TIGR01584 230 PKELLIAKMANDVIVNSGYFKDGFSFQTGTGGAALAVTRFLKEK 273 (492)
T ss_pred HHHHHHHHHHHHHHhhcCCCCCCCEEEccCCHHHHHHHHHHHHH
Confidence 45555669999998 899999999999999999999765
No 52
>COG4670 Acyl CoA:acetate/3-ketoacid CoA transferase [Lipid metabolism]
Probab=69.04 E-value=8.2 Score=36.57 Aligned_cols=50 Identities=14% Similarity=0.193 Sum_probs=35.8
Q ss_pred HHHHHHHHhhcCCCCCEEEECcCH---HHHHHHHHHHhHhhc-CCCCCeEEEcC
Q 029472 26 FRAAKHTVDTYITSGMVVGLGSGQ---ASAMAIEYMGRQLRA-GALKDVIGIPT 75 (193)
Q Consensus 26 k~iaa~~A~~~I~dg~tI~LdsGs---T~~~la~~L~~~~~~-~~~~~lTVVTn 75 (193)
|.+-++.|+.+|+||+||.+.+-. .-.++.+.|.++... |..++||++-.
T Consensus 4 K~isa~ea~~~I~DG~~vavsgf~~a~~Pe~ll~al~~r~~~tghPr~Lt~i~~ 57 (527)
T COG4670 4 KVISAQEAAALIKDGATVAVSGFNGAGCPEELLKALGERYLETGHPRDLTFISP 57 (527)
T ss_pred ccccHHHHHhhCCCCCEEEeccccccCCHHHHHHHHHHHHHhhCCCCceEEEcc
Confidence 344468999999999999996543 235667777766443 54569999864
No 53
>PF08679 DsrD: Dissimilatory sulfite reductase D (DsrD); InterPro: IPR014793 The structure of the dissimilatory sulphite reductase D (DsrD) protein has shown it to contain a winged-helix motif similar to those found in DNA binding proteins []. The structure suggests a possible role for DsrD in transcription or translation of genes, which catalyse dissimilatory sulphite reduction. ; PDB: 1WQ2_B 1UCR_B.
Probab=61.62 E-value=2 Score=29.91 Aligned_cols=33 Identities=18% Similarity=0.186 Sum_probs=26.2
Q ss_pred ChHHHHHHHHHHHhhcCCCCCEEEECcCHHHHH
Q 029472 21 GSSVLFRAAKHTVDTYITSGMVVGLGSGQASAM 53 (193)
Q Consensus 21 ~~~ekk~iaa~~A~~~I~dg~tI~LdsGsT~~~ 53 (193)
.++.|.+.+-+.+-+||.+|-..|--+|||+.+
T Consensus 29 ~pd~k~R~vKKi~~~LV~Eg~l~yWSSGSTTmY 61 (67)
T PF08679_consen 29 FPDAKPREVKKIVNELVNEGKLEYWSSGSTTMY 61 (67)
T ss_dssp -TTS-HHHHHHHHHHHHHTTSEEEEEETTEEEE
T ss_pred CCCcCHHHHHHHHHHHHhhCeEEEEcCCCcEEe
Confidence 455677778677889999999999999999754
No 54
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=60.59 E-value=36 Score=31.68 Aligned_cols=76 Identities=13% Similarity=0.216 Sum_probs=56.8
Q ss_pred HHhhcCCCCCEEEECcCHHHHHHHHHHHhHhhcCCCCCeEEEcCcHHHHHHHH-HCCCcEEEcCCC----CcccEEEecc
Q 029472 32 TVDTYITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAA-VAGIPLDQYRDT----SQIDFAFDDA 106 (193)
Q Consensus 32 ~A~~~I~dg~tI~LdsGsT~~~la~~L~~~~~~~~~~~lTVVTnSl~ia~~l~-~~~i~v~~l~~~----~~~D~af~ga 106 (193)
.-..-+++--+++||.|-+....|++|... | ..++||+-=...-|..|+ +.+..+..+++. ...|+.|-+.
T Consensus 171 ~~~~~L~~~~vlvIGAGem~~lva~~L~~~---g-~~~i~IaNRT~erA~~La~~~~~~~~~l~el~~~l~~~DvVissT 246 (414)
T COG0373 171 RIFGSLKDKKVLVIGAGEMGELVAKHLAEK---G-VKKITIANRTLERAEELAKKLGAEAVALEELLEALAEADVVISST 246 (414)
T ss_pred HHhcccccCeEEEEcccHHHHHHHHHHHhC---C-CCEEEEEcCCHHHHHHHHHHhCCeeecHHHHHHhhhhCCEEEEec
Confidence 333335666699999999999999999864 2 247999888888898775 567777766542 3689999987
Q ss_pred ccccC
Q 029472 107 DIIEE 111 (193)
Q Consensus 107 dgvd~ 111 (193)
..-++
T Consensus 247 sa~~~ 251 (414)
T COG0373 247 SAPHP 251 (414)
T ss_pred CCCcc
Confidence 76544
No 55
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=58.14 E-value=17 Score=24.78 Aligned_cols=30 Identities=33% Similarity=0.357 Sum_probs=24.9
Q ss_pred EEEECcCHHHHHHHHHHHhHhhcCCCCCeEEEcCc
Q 029472 42 VVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTS 76 (193)
Q Consensus 42 tI~LdsGsT~~~la~~L~~~~~~~~~~~lTVVTnS 76 (193)
++.+|+|-+..++|..|.+. | .++|+|..+
T Consensus 2 vvViGgG~ig~E~A~~l~~~---g--~~vtli~~~ 31 (80)
T PF00070_consen 2 VVVIGGGFIGIELAEALAEL---G--KEVTLIERS 31 (80)
T ss_dssp EEEESSSHHHHHHHHHHHHT---T--SEEEEEESS
T ss_pred EEEECcCHHHHHHHHHHHHh---C--cEEEEEecc
Confidence 57899999999999999864 2 478988765
No 56
>TIGR01110 mdcA malonate decarboxylase, alpha subunit. This model describes malonate decarboxylase alpha subunit, from both the water-soluble form as found in Klebsiella pneumoniae and the form couple to sodium ion pumping in Malonomonas rubra. Malonate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases. Essentially, it couples the energy derived from decarboxylation of a carboxylic acid substrate to move Na+ ion across the bilayer. Functional malonate decarboylase is a multi subunit protein. The alpha subunit enzymatically performs the transfer of malonate (substrate) to an acyl carrier protein subunit for subsequent decarboxylation, hence the name: acetyl-S-acyl carrier protein:malonate carrier protein-SH transferase.
Probab=56.98 E-value=1.8e+02 Score=28.16 Aligned_cols=109 Identities=15% Similarity=0.126 Sum_probs=60.7
Q ss_pred HHHhhcCCCCCEEEECcC--HHHHHHHHHHHhHhhcCCCCCeEEEcCcHHH--HHHHHHCCC--cEE-------------
Q 029472 31 HTVDTYITSGMVVGLGSG--QASAMAIEYMGRQLRAGALKDVIGIPTSVAS--ANEAAVAGI--PLD------------- 91 (193)
Q Consensus 31 ~~A~~~I~dg~tI~LdsG--sT~~~la~~L~~~~~~~~~~~lTVVTnSl~i--a~~l~~~~i--~v~------------- 91 (193)
.....+|+|||+|.|.+= --...+++.|.+-.. ...++|+.|-.++.- -..|-..|+ ++.
T Consensus 32 ~~l~~~i~~Gdrv~leg~~q~~a~~l~~~l~~~~~-~~~~dLh~v~~~~~~~~~~~l~~~G~a~kl~fs~~g~~~~R~~~ 110 (543)
T TIGR01110 32 ELLEAVIAPGDRVVLEGNNQKQADFLSRCLASCDP-EKINDLHMVQSSVPLPEHLDLFEKGIARKLDFSFAGPQSLRIAQ 110 (543)
T ss_pred HHHHHhCCCCCEEEECCccccchHHHHhhHHhhCc-cccCCcEEEEecCCchhHHHHHhcCceeeEEEeecCcchHHHHH
Confidence 345688999999999654 334555554432111 112488888774433 333434443 111
Q ss_pred ----------Ec-------CCC---CcccEEEeccccccCCCcceecCCCCCCcchhHHHHHHHHHhcC----eEEEEEe
Q 029472 92 ----------QY-------RDT---SQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAAD----KLVFMVS 147 (193)
Q Consensus 92 ----------~l-------~~~---~~~D~af~gadgvd~~~~~~i~g~g~~~~~ea~~k~k~i~~~S~----~~ilLaD 147 (193)
.+ ..+ ..+|++++-++--|. .+++..|-.. .... .++++|+ ++|+-++
T Consensus 111 av~~G~id~iPih~~lse~pRlf~~L~pDVALI~aSpAD~-~GN~slG~s~-~~~~------aaaeAAk~~agiVIVEVN 182 (543)
T TIGR01110 111 LLEDGKLEIGAIHTYLELYSRYFVDLTPNVSLIAAYEADR-DGNLYTGPNT-EDTP------AIVEATAFRDGIVIAQVN 182 (543)
T ss_pred HHHcCCeeEeehhchHhhhhhhhhccCCcEEEEECCcCCC-CCeEEecCcc-cchH------HHHHhhhhcCCEEEEEEC
Confidence 11 111 258999999999998 6888654211 1122 2234444 7777776
Q ss_pred C
Q 029472 148 E 148 (193)
Q Consensus 148 ~ 148 (193)
.
T Consensus 183 e 183 (543)
T TIGR01110 183 E 183 (543)
T ss_pred c
Confidence 5
No 57
>PRK00443 nagB glucosamine-6-phosphate deaminase; Provisional
Probab=56.98 E-value=17 Score=30.53 Aligned_cols=22 Identities=18% Similarity=0.309 Sum_probs=19.9
Q ss_pred CCCEEEECcCHHHHHHHHHHHh
Q 029472 39 SGMVVGLGSGQASAMAIEYMGR 60 (193)
Q Consensus 39 dg~tI~LdsGsT~~~la~~L~~ 60 (193)
++.+|+|..|+|...+.++|.+
T Consensus 33 ~~~~iglsgG~T~~~~~~~L~~ 54 (261)
T PRK00443 33 RPFVLGLATGSSPLETYKALIE 54 (261)
T ss_pred CceEEEecCCCCHHHHHHHHHH
Confidence 6788999999999999999984
No 58
>cd01399 GlcN6P_deaminase GlcN6P_deaminase: Glucosamine-6-phosphate (GlcN6P) deaminase subfamily; GlcN6P deaminase catalyzes the reversible conversion of GlcN6P to D-fructose-6-phosphate (Fru6P) and ammonium. The reaction is an aldo-keto isomerization coupled with an amination or deamination. It is the last step of the metabolic pathway of N-acetyl-D-glucosamine-6-phosphate (GlcNAc6P). GlcN6P deaminase is a hexameric enzyme that is allosterically activated by GlcNAc6P.
Probab=53.62 E-value=14 Score=30.33 Aligned_cols=32 Identities=22% Similarity=0.266 Sum_probs=26.6
Q ss_pred HHHHHhhcCCC--CCEEEECcCHHHHHHHHHHHh
Q 029472 29 AKHTVDTYITS--GMVVGLGSGQASAMAIEYMGR 60 (193)
Q Consensus 29 aa~~A~~~I~d--g~tI~LdsGsT~~~la~~L~~ 60 (193)
+|+...+.|++ +.+|+|..|+|...+.++|..
T Consensus 7 ~a~~l~~~i~~~~~~~i~lsgG~T~~~~~~~l~~ 40 (232)
T cd01399 7 AAELIAELIREKPPAVLGLATGSTPLGVYEELIE 40 (232)
T ss_pred HHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHH
Confidence 34666677777 779999999999999999974
No 59
>PRK10646 ADP-binding protein; Provisional
Probab=50.57 E-value=32 Score=27.50 Aligned_cols=38 Identities=13% Similarity=0.093 Sum_probs=26.4
Q ss_pred cCChHHHHHHHHHHHhhcCCCCCEEEE----CcCHHHHHHHHHHH
Q 029472 19 SNGSSVLFRAAKHTVDTYITSGMVVGL----GSGQASAMAIEYMG 59 (193)
Q Consensus 19 s~~~~ekk~iaa~~A~~~I~dg~tI~L----dsGsT~~~la~~L~ 59 (193)
+.+.++-++.+ +.-++.+++|++|.| |+|-|++ +|.|.
T Consensus 8 ~~s~~~t~~l~-~~la~~l~~g~vi~L~GdLGaGKTtf--~rgl~ 49 (153)
T PRK10646 8 LPDEQATLDLG-ARVAKACDGATVIYLYGDLGAGKTTF--SRGFL 49 (153)
T ss_pred CCCHHHHHHHH-HHHHHhCCCCcEEEEECCCCCCHHHH--HHHHH
Confidence 34455556665 677789999999997 7887763 35554
No 60
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=48.62 E-value=39 Score=25.71 Aligned_cols=72 Identities=15% Similarity=0.157 Sum_probs=51.3
Q ss_pred HHHhhcCCCCCEEEECcCHHHHHHHHHHHhHhhcCCCCCeEEEcCcHHHHHHHHH-C---CCcEEEcCCCC----cccEE
Q 029472 31 HTVDTYITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAV-A---GIPLDQYRDTS----QIDFA 102 (193)
Q Consensus 31 ~~A~~~I~dg~tI~LdsGsT~~~la~~L~~~~~~~~~~~lTVVTnSl~ia~~l~~-~---~i~v~~l~~~~----~~D~a 102 (193)
++...-++..-++.||+|-+...++.+|... | .++++|+.=+..-+..|.. . ++....+.+.. .+|+.
T Consensus 4 ~~~~~~l~~~~vlviGaGg~ar~v~~~L~~~---g-~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~~~~~~~Div 79 (135)
T PF01488_consen 4 KKKFGDLKGKRVLVIGAGGAARAVAAALAAL---G-AKEITIVNRTPERAEALAEEFGGVNIEAIPLEDLEEALQEADIV 79 (135)
T ss_dssp CTHHSTGTTSEEEEESSSHHHHHHHHHHHHT---T-SSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHCHHHHTESEE
T ss_pred HHhcCCcCCCEEEEECCHHHHHHHHHHHHHc---C-CCEEEEEECCHHHHHHHHHHcCccccceeeHHHHHHHHhhCCeE
Confidence 4455567888899999999999999999864 2 2469999988888876643 2 35566665542 57776
Q ss_pred Eecc
Q 029472 103 FDDA 106 (193)
Q Consensus 103 f~ga 106 (193)
|-..
T Consensus 80 I~aT 83 (135)
T PF01488_consen 80 INAT 83 (135)
T ss_dssp EE-S
T ss_pred EEec
Confidence 6544
No 61
>KOG2828 consensus Acetyl-CoA hydrolase [Energy production and conversion]
Probab=46.86 E-value=20 Score=33.23 Aligned_cols=117 Identities=17% Similarity=0.192 Sum_probs=68.4
Q ss_pred HHHhhcCCCCCEEEECcC-HHHHHHHHHHHhHhhcCCCCCeEEEcCcHHHH--------HHHHH--------------CC
Q 029472 31 HTVDTYITSGMVVGLGSG-QASAMAIEYMGRQLRAGALKDVIGIPTSVASA--------NEAAV--------------AG 87 (193)
Q Consensus 31 ~~A~~~I~dg~tI~LdsG-sT~~~la~~L~~~~~~~~~~~lTVVTnSl~ia--------~~l~~--------------~~ 87 (193)
.+|..+|+.++.+|++.= +|-..+++++.++...|+|..++++--|..-- ....+ .|
T Consensus 30 ~ea~~~vks~~f~~vg~~aa~PnaLl~a~~~~~~s~nLn~~~~~h~~~~g~e~~~pe~~~~iq~ns~fvg~~irK~Vn~G 109 (454)
T KOG2828|consen 30 FEAGAYVKSSGFTGVGGPAATPNALLEAVEKNNLSGNLNFILFVHASLGGEENAWPEYDMIIQRNSHFVGKPIRKAVNLG 109 (454)
T ss_pred hhcccccccCCceeecccccCcHHHHHHHHHhccccccceeEEeeeccCCccccChhhhhhhhcCccccCcchHHHhhcC
Confidence 467788999999999655 67788899998765555554444444333220 00000 01
Q ss_pred -Cc-----E-----EEcCCCCcccEEEeccccccCCCcceecCCCCCCcchhHHHHHHHHHhcCeEEEEEeCCCccCCCC
Q 029472 88 -IP-----L-----DQYRDTSQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVSENQYKGVLD 156 (193)
Q Consensus 88 -i~-----v-----~~l~~~~~~D~af~gadgvd~~~~~~i~g~g~~~~~ea~~k~k~i~~~S~~~ilLaD~SKf~~~l~ 156 (193)
+. + ..+.+++.+|.+++.++..|. .+.+.-| ++.+ -.. .+ +..|+++|..+.. +.-..+|
T Consensus 110 radf~pifLsevP~l~t~G~~~~d~alI~vSppde-~Gfc~lG---~sVd--ts~-aa-~t~skkIIa~VNt-~mPrt~G 180 (454)
T KOG2828|consen 110 RADFFPIFLSEVPQLLTYGTYTLDFALIEVSPPDE-DGFCVLG---TSVD--TSP-AA-ATNSKKIIAEVNT-AMPRTEG 180 (454)
T ss_pred ccccchhHHHhchHHHhcceeeceeEEEEecCCcc-CCceecc---CCcc--chH-HH-Hhccchheehhcc-CCCCcCC
Confidence 00 0 012344589999999999998 5766554 2221 121 23 3688888888774 3333444
No 62
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=44.25 E-value=71 Score=30.21 Aligned_cols=49 Identities=20% Similarity=0.184 Sum_probs=41.5
Q ss_pred CCCEEEECcCHHHHHHHHHHHhHhhcCCCCCeEEEcCcHHHHHHHHHCCCcEEE
Q 029472 39 SGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLDQ 92 (193)
Q Consensus 39 dg~tI~LdsGsT~~~la~~L~~~~~~~~~~~lTVVTnSl~ia~~l~~~~i~v~~ 92 (193)
++.+|.+|.|.....+++.|.++ | .++++|-+.-+....+.+.+.+++.
T Consensus 417 ~~hiiI~G~G~~G~~la~~L~~~---g--~~vvvId~d~~~~~~~~~~g~~~i~ 465 (558)
T PRK10669 417 CNHALLVGYGRVGSLLGEKLLAA---G--IPLVVIETSRTRVDELRERGIRAVL 465 (558)
T ss_pred CCCEEEECCChHHHHHHHHHHHC---C--CCEEEEECCHHHHHHHHHCCCeEEE
Confidence 47899999999999999999764 2 3799999999888888888887765
No 63
>TIGR03458 YgfH_subfam succinate CoA transferases. A closely related clade not included in this family are the Ach1p proteins of fungi which are acetyl-CoA hydrolases. This name has been applied to many of the proteins detected by this model, possibly erroneously.
Probab=42.82 E-value=39 Score=31.99 Aligned_cols=51 Identities=8% Similarity=0.221 Sum_probs=37.4
Q ss_pred HHHHHHHHHHhhcCC----CC------CEEEECcCHHHHHHHHHHHhHhhcCCCCCeEEEcCcHH
Q 029472 24 VLFRAAKHTVDTYIT----SG------MVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVA 78 (193)
Q Consensus 24 ekk~iaa~~A~~~I~----dg------~tI~LdsGsT~~~la~~L~~~~~~~~~~~lTVVTnSl~ 78 (193)
+.-+.||+.++++|+ || +||=+|.|..-..++..|.++ .+++|-|=|-=+.
T Consensus 223 ~~~~~Ia~~va~~i~~~~~dG~~~~~~~tlQ~GiG~ipnAv~~~L~~~----~~kdLgihtem~~ 283 (485)
T TIGR03458 223 EVSQKIAGHLIDFLDHEVKAGRLPKNLLPLQSGVGNIANAVLAGLGDS----PFENLTMYTEVIQ 283 (485)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCCceeecCChHHHHHHHHHhcC----CCCCceEEeeech
Confidence 334445599999976 88 999999999999999999753 1236665554443
No 64
>PRK10494 hypothetical protein; Provisional
Probab=41.07 E-value=1e+02 Score=26.54 Aligned_cols=63 Identities=5% Similarity=0.048 Sum_probs=43.1
Q ss_pred HHHHHHhhc-CCCCCEEEECcCHHHHHHHHHHHhHhhcCCCCCeEEEcCcHHHHHH---HHHCCCcEEEc
Q 029472 28 AAKHTVDTY-ITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANE---AAVAGIPLDQY 93 (193)
Q Consensus 28 iaa~~A~~~-I~dg~tI~LdsGsT~~~la~~L~~~~~~~~~~~lTVVTnSl~ia~~---l~~~~i~v~~l 93 (193)
.+++.+.++ |.+.+.|.-+.+++|.+=|++..+.. + .+++.+||++.++-.. +.+.|++++..
T Consensus 141 ~~~~~l~~lGVp~~~Ii~e~~s~nT~eNa~~~~~~~--~-~~~iiLVTsa~Hm~RA~~~f~~~Gl~v~p~ 207 (259)
T PRK10494 141 VGARVAQSLGVPREDIITLDLPKDTEEEAAAVKQAI--G-DAPFLLVTSASHLPRAMIFFQQEGLNPLPA 207 (259)
T ss_pred HHHHHHHHcCCCHHHeeeCCCCCCHHHHHHHHHHHh--C-CCCEEEECCHHHHHHHHHHHHHcCCceeec
Confidence 334555666 77777777788887777666665432 1 1369999999998653 35678888864
No 65
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=39.42 E-value=1.4e+02 Score=25.36 Aligned_cols=61 Identities=11% Similarity=0.119 Sum_probs=41.2
Q ss_pred HHHHHHHHhhcCCCCC-EEEECcCHH---------------HHHHHHHHHhHhhcCCCCCeEEEcCcHHHHHHHHHCCCc
Q 029472 26 FRAAKHTVDTYITSGM-VVGLGSGQA---------------SAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIP 89 (193)
Q Consensus 26 k~iaa~~A~~~I~dg~-tI~LdsGsT---------------~~~la~~L~~~~~~~~~~~lTVVTnSl~ia~~l~~~~i~ 89 (193)
..+. +.|.+++++|. .|=||+++| +..+++.|.+.. . ..+.+=|....++.++-+.+..
T Consensus 24 ~~~~-~~a~~~~~~GAdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~---~-~piSIDT~~~~v~~aaL~~g~~ 98 (258)
T cd00423 24 DKAL-EHARRMVEEGADIIDIGGESTRPGAEPVSVEEELERVIPVLRALAGEP---D-VPISVDTFNAEVAEAALKAGAD 98 (258)
T ss_pred HHHH-HHHHHHHHCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcC---C-CeEEEeCCcHHHHHHHHHhCCC
Confidence 4444 67899999876 788899998 444555554310 1 2588888888888876666655
Q ss_pred EE
Q 029472 90 LD 91 (193)
Q Consensus 90 v~ 91 (193)
++
T Consensus 99 iI 100 (258)
T cd00423 99 II 100 (258)
T ss_pred EE
Confidence 44
No 66
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=37.39 E-value=61 Score=25.96 Aligned_cols=54 Identities=17% Similarity=0.169 Sum_probs=33.7
Q ss_pred CChHHHHHHHHHHHhhcCCCCCEEEE----CcCHHHH--HHHHHHHhHhhcCCCCCeEEEcCcHHHHHH
Q 029472 20 NGSSVLFRAAKHTVDTYITSGMVVGL----GSGQASA--MAIEYMGRQLRAGALKDVIGIPTSVASANE 82 (193)
Q Consensus 20 ~~~~ekk~iaa~~A~~~I~dg~tI~L----dsGsT~~--~la~~L~~~~~~~~~~~lTVVTnSl~ia~~ 82 (193)
.+.++..+.+ +.-+..++.|++|.| |+|-|++ .+++.|.- +-.|.+....+.+.
T Consensus 6 ~~~~~t~~lg-~~l~~~l~~g~Vv~L~GdLGAGKTtf~rgi~~~Lg~--------~~~V~SPTFtlv~~ 65 (149)
T COG0802 6 PDEEATLALG-ERLAEALKAGDVVLLSGDLGAGKTTLVRGIAKGLGV--------DGNVKSPTFTLVEE 65 (149)
T ss_pred CCHHHHHHHH-HHHHhhCCCCCEEEEEcCCcCChHHHHHHHHHHcCC--------CCcccCCCeeeehh
Confidence 4445555554 788889999999997 7887763 34444431 34455555555443
No 67
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=36.97 E-value=88 Score=30.29 Aligned_cols=49 Identities=10% Similarity=0.042 Sum_probs=41.4
Q ss_pred CCCEEEECcCHHHHHHHHHHHhHhhcCCCCCeEEEcCcHHHHHHHHHCCCcEEE
Q 029472 39 SGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLDQ 92 (193)
Q Consensus 39 dg~tI~LdsGsT~~~la~~L~~~~~~~~~~~lTVVTnSl~ia~~l~~~~i~v~~ 92 (193)
.+.+|.+|.|..-..+++.|.++ | .++++|-++.+-...+++.|.+++.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~---g--~~vvvID~d~~~v~~~~~~g~~v~~ 448 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSS---G--VKMTVLDHDPDHIETLRKFGMKVFY 448 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhC---C--CCEEEEECCHHHHHHHHhcCCeEEE
Confidence 47899999999999999999763 2 3799999999988888888887764
No 68
>PF02887 PK_C: Pyruvate kinase, alpha/beta domain; InterPro: IPR015795 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the 3-layer alpha/beta/alpha sandwich domain. This domain has a similar topology to the archaeal hypothetical protein, MTH1675 from Methanobacterium thermoautotrophicum.; PDB: 3QTG_B 1VP8_A 1T57_C 3N25_A 1AQF_C 2G50_B 1F3X_G 1A5U_F 1A49_E 1F3W_C ....
Probab=36.22 E-value=59 Score=24.01 Aligned_cols=51 Identities=14% Similarity=0.277 Sum_probs=34.5
Q ss_pred HHhhcCCCCCEEEE-CcCHHHHHHHHHHHhHhhcCCCCCeEEEcCcHHHHHHHHH-CCCc
Q 029472 32 TVDTYITSGMVVGL-GSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAV-AGIP 89 (193)
Q Consensus 32 ~A~~~I~dg~tI~L-dsGsT~~~la~~L~~~~~~~~~~~lTVVTnSl~ia~~l~~-~~i~ 89 (193)
.++.-+...-+|.+ .+|.|...++++=+. ..+-++|++-.++..|.- .|+.
T Consensus 10 ~~A~~~~ak~Ivv~T~sG~ta~~isk~RP~-------~pIiavt~~~~~~r~l~l~~GV~ 62 (117)
T PF02887_consen 10 ELAEDLNAKAIVVFTESGRTARLISKYRPK-------VPIIAVTPNESVARQLSLYWGVY 62 (117)
T ss_dssp HHHHHHTESEEEEE-SSSHHHHHHHHT-TS-------SEEEEEESSHHHHHHGGGSTTEE
T ss_pred HHHHhcCCCEEEEECCCchHHHHHHhhCCC-------CeEEEEcCcHHHHhhhhcccceE
Confidence 34444454444444 889999999887664 279999999999887753 3543
No 69
>TIGR00824 EIIA-man PTS system, mannose/fructose/sorbose family, IIA component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIA components.
Probab=34.76 E-value=1.5e+02 Score=22.02 Aligned_cols=47 Identities=11% Similarity=0.017 Sum_probs=28.3
Q ss_pred hHHHHHHHHHHHhhcCCCCC-EE-EECc--CHHHHHHHHHHHhHhhcCCCCCeEEEcC
Q 029472 22 SSVLFRAAKHTVDTYITSGM-VV-GLGS--GQASAMAIEYMGRQLRAGALKDVIGIPT 75 (193)
Q Consensus 22 ~~ekk~iaa~~A~~~I~dg~-tI-~Lds--GsT~~~la~~L~~~~~~~~~~~lTVVTn 75 (193)
.++-++.+ +++.+-+.+++ +| +-|- ||-...+.+.+.++ +++.|||-
T Consensus 41 ~~~~~~~l-~~~i~~~~~~~~vivltDl~GGSp~n~a~~~~~~~------~~~~vIsG 91 (116)
T TIGR00824 41 AETLQEKY-NAALADLDTEEEVLFLVDIFGGSPYNAAARIIVDK------PHMDVIAG 91 (116)
T ss_pred HHHHHHHH-HHHHHhcCCCCCEEEEEeCCCCCHHHHHHHHHhhc------CCEEEEEe
Confidence 44555666 56666666544 44 5577 77776666666442 36777764
No 70
>PRK05205 bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase; Provisional
Probab=34.49 E-value=39 Score=27.03 Aligned_cols=25 Identities=16% Similarity=0.133 Sum_probs=19.4
Q ss_pred CCCCCEEEE----CcCHHHHHHHHHHHhH
Q 029472 37 ITSGMVVGL----GSGQASAMAIEYMGRQ 61 (193)
Q Consensus 37 I~dg~tI~L----dsGsT~~~la~~L~~~ 61 (193)
++...+|.+ |+|.|...++++|.++
T Consensus 93 v~gr~VLIVDDIidTG~Tl~~~~~~L~~~ 121 (176)
T PRK05205 93 IEGKRVILVDDVLYTGRTIRAALDALFDY 121 (176)
T ss_pred CCCCEEEEEecccCcHHHHHHHHHHHHhc
Confidence 555556654 7999999999999764
No 71
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=33.90 E-value=2.4e+02 Score=23.54 Aligned_cols=95 Identities=15% Similarity=0.313 Sum_probs=56.2
Q ss_pred HhhcCCCCC-EEEECcCHHHHHHHHHHHhHhhcCCCCCeEEEcCcHHHHHHHHHCCCcEEEcC------CC--CcccEEE
Q 029472 33 VDTYITSGM-VVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLDQYR------DT--SQIDFAF 103 (193)
Q Consensus 33 A~~~I~dg~-tI~LdsGsT~~~la~~L~~~~~~~~~~~lTVVTnSl~ia~~l~~~~i~v~~l~------~~--~~~D~af 103 (193)
-+++|++|. ++=||+|.=.+ .++|.+. + + -...-|=.+-.-...|...|++|+..+ .+ ..+|.++
T Consensus 7 I~~~I~pgsrVLDLGCGdG~L--L~~L~~~-k-~--v~g~GvEid~~~v~~cv~rGv~Viq~Dld~gL~~f~d~sFD~VI 80 (193)
T PF07021_consen 7 IAEWIEPGSRVLDLGCGDGEL--LAYLKDE-K-Q--VDGYGVEIDPDNVAACVARGVSVIQGDLDEGLADFPDQSFDYVI 80 (193)
T ss_pred HHHHcCCCCEEEecCCCchHH--HHHHHHh-c-C--CeEEEEecCHHHHHHHHHcCCCEEECCHHHhHhhCCCCCccEEe
Confidence 347899999 56688884433 3567653 1 1 145566667676677888999998632 22 1466666
Q ss_pred eccccccCCCcceecCCCCCCcchhHHHHHHHHHhcCeEEEEEe
Q 029472 104 DDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVS 147 (193)
Q Consensus 104 ~gadgvd~~~~~~i~g~g~~~~~ea~~k~k~i~~~S~~~ilLaD 147 (193)
++- .+- .-..+..+-+.|+ +.+++.|+-..
T Consensus 81 lsq-tLQ------------~~~~P~~vL~Eml-RVgr~~IVsFP 110 (193)
T PF07021_consen 81 LSQ-TLQ------------AVRRPDEVLEEML-RVGRRAIVSFP 110 (193)
T ss_pred hHh-HHH------------hHhHHHHHHHHHH-HhcCeEEEEec
Confidence 642 111 1112233444665 88988887644
No 72
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=33.71 E-value=31 Score=22.80 Aligned_cols=25 Identities=12% Similarity=0.133 Sum_probs=22.4
Q ss_pred CCCCCEEEECcCHHHHHHHHHHHhH
Q 029472 37 ITSGMVVGLGSGQASAMAIEYMGRQ 61 (193)
Q Consensus 37 I~dg~tI~LdsGsT~~~la~~L~~~ 61 (193)
.+||...-+..|+|+..+|+.|...
T Consensus 5 lpdG~~~~~~~g~T~~d~A~~I~~~ 29 (60)
T PF02824_consen 5 LPDGSIKELPEGSTVLDVAYSIHSS 29 (60)
T ss_dssp ETTSCEEEEETTBBHHHHHHHHSHH
T ss_pred CCCCCeeeCCCCCCHHHHHHHHCHH
Confidence 3899999999999999999999754
No 73
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=32.58 E-value=48 Score=25.98 Aligned_cols=36 Identities=22% Similarity=0.261 Sum_probs=27.4
Q ss_pred cCCCCCEEEECcCHHHHHHHHHHHhHhhcCCCCCeEEEcCc
Q 029472 36 YITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTS 76 (193)
Q Consensus 36 ~I~dg~tI~LdsGsT~~~la~~L~~~~~~~~~~~lTVVTnS 76 (193)
-.++..++.+|+|.|...++..|.+. | +++|+++-+
T Consensus 164 ~~~~k~V~VVG~G~SA~d~a~~l~~~---g--~~V~~~~R~ 199 (203)
T PF13738_consen 164 DFKGKRVVVVGGGNSAVDIAYALAKA---G--KSVTLVTRS 199 (203)
T ss_dssp GCTTSEEEEE--SHHHHHHHHHHTTT---C--SEEEEEESS
T ss_pred hcCCCcEEEEcChHHHHHHHHHHHhh---C--CEEEEEecC
Confidence 46678899999999999999999864 3 479988765
No 74
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=31.82 E-value=1.6e+02 Score=26.70 Aligned_cols=34 Identities=21% Similarity=0.176 Sum_probs=28.0
Q ss_pred CCCCEEEECcCHHHHHHHHHHHhHhhcCCCCCeEEEcCc
Q 029472 38 TSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTS 76 (193)
Q Consensus 38 ~dg~tI~LdsGsT~~~la~~L~~~~~~~~~~~lTVVTnS 76 (193)
.+..++.+|+|.+..++|..|.+. | .++|+|+.+
T Consensus 147 ~~~~vvViGgG~ig~E~A~~l~~~---g--~~Vtli~~~ 180 (438)
T PRK13512 147 QVDKALVVGAGYISLEVLENLYER---G--LHPTLIHRS 180 (438)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC---C--CcEEEEecc
Confidence 456788999999999999999764 2 379999875
No 75
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=31.52 E-value=1.1e+02 Score=23.75 Aligned_cols=36 Identities=17% Similarity=0.255 Sum_probs=24.2
Q ss_pred hHHHHHHHHHHHhhcCCCCCEEEE----CcCHHHHHHHHHHHh
Q 029472 22 SSVLFRAAKHTVDTYITSGMVVGL----GSGQASAMAIEYMGR 60 (193)
Q Consensus 22 ~~ekk~iaa~~A~~~I~dg~tI~L----dsGsT~~~la~~L~~ 60 (193)
.++-++.+ +.-++.+++|++|.| |+|-|++ ++.+.+
T Consensus 5 ~~~t~~l~-~~l~~~l~~~~~i~l~G~lGaGKTtl--~~~l~~ 44 (133)
T TIGR00150 5 EKAMDKFG-KAFAKPLDFGTVVLLKGDLGAGKTTL--VQGLLQ 44 (133)
T ss_pred HHHHHHHH-HHHHHhCCCCCEEEEEcCCCCCHHHH--HHHHHH
Confidence 34444554 677788999999987 7887663 355543
No 76
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=31.04 E-value=1.9e+02 Score=21.58 Aligned_cols=44 Identities=16% Similarity=0.297 Sum_probs=33.9
Q ss_pred EEECcCHHHHHHHHHHHhHhhcCCCCCeEEEcCcHHHHHHHHHCCCcEEE
Q 029472 43 VGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLDQ 92 (193)
Q Consensus 43 I~LdsGsT~~~la~~L~~~~~~~~~~~lTVVTnSl~ia~~l~~~~i~v~~ 92 (193)
..+|+|..-..+|-+|.+. | .++++++.+- .+..+...++.+..
T Consensus 2 ~I~G~GaiG~~~a~~L~~~---g--~~V~l~~r~~-~~~~~~~~g~~~~~ 45 (151)
T PF02558_consen 2 LIIGAGAIGSLYAARLAQA---G--HDVTLVSRSP-RLEAIKEQGLTITG 45 (151)
T ss_dssp EEESTSHHHHHHHHHHHHT---T--CEEEEEESHH-HHHHHHHHCEEEEE
T ss_pred EEECcCHHHHHHHHHHHHC---C--CceEEEEccc-cHHhhhheeEEEEe
Confidence 5689999999999999753 2 4899999998 56667777765543
No 77
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=30.28 E-value=1.4e+02 Score=28.74 Aligned_cols=49 Identities=10% Similarity=0.070 Sum_probs=41.0
Q ss_pred CCCEEEECcCHHHHHHHHHHHhHhhcCCCCCeEEEcCcHHHHHHHHHCCCcEEE
Q 029472 39 SGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLDQ 92 (193)
Q Consensus 39 dg~tI~LdsGsT~~~la~~L~~~~~~~~~~~lTVVTnSl~ia~~l~~~~i~v~~ 92 (193)
++.+|.+|.|.....+++.|.+. | .++++|-++-+....+.+.|.+++.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~---g--~~vvvID~d~~~v~~~~~~g~~v~~ 448 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMAN---K--MRITVLERDISAVNLMRKYGYKVYY 448 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhC---C--CCEEEEECCHHHHHHHHhCCCeEEE
Confidence 46799999999999999999753 2 3799999999988888888887764
No 78
>TIGR01110 mdcA malonate decarboxylase, alpha subunit. This model describes malonate decarboxylase alpha subunit, from both the water-soluble form as found in Klebsiella pneumoniae and the form couple to sodium ion pumping in Malonomonas rubra. Malonate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases. Essentially, it couples the energy derived from decarboxylation of a carboxylic acid substrate to move Na+ ion across the bilayer. Functional malonate decarboylase is a multi subunit protein. The alpha subunit enzymatically performs the transfer of malonate (substrate) to an acyl carrier protein subunit for subsequent decarboxylation, hence the name: acetyl-S-acyl carrier protein:malonate carrier protein-SH transferase.
Probab=29.43 E-value=82 Score=30.36 Aligned_cols=42 Identities=10% Similarity=-0.096 Sum_probs=35.6
Q ss_pred CChHHHHHHHHHHHhhcCCCCC---EEEECcCHHHHHHHHHHHhH
Q 029472 20 NGSSVLFRAAKHTVDTYITSGM---VVGLGSGQASAMAIEYMGRQ 61 (193)
Q Consensus 20 ~~~~ekk~iaa~~A~~~I~dg~---tI~LdsGsT~~~la~~L~~~ 61 (193)
....+....+|+.++++|.||+ +|=+|.|.....+...|+.+
T Consensus 219 a~ise~~~~ia~~v~~~I~dg~~v~tLq~GIG~~p~AI~~~L~~~ 263 (543)
T TIGR01110 219 ANITDVQVLMAMMAIKGIYAEYQVQRLNHGIGFNTAAIELLLPTY 263 (543)
T ss_pred ccCCHHHHHHHHHHHhhCcCCCcCceeeeccCcCHHHHHHHhccc
Confidence 3444666667799999999999 99999999999999999865
No 79
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=29.33 E-value=1.8e+02 Score=26.43 Aligned_cols=33 Identities=18% Similarity=0.261 Sum_probs=27.5
Q ss_pred CCCEEEECcCHHHHHHHHHHHhHhhcCCCCCeEEEcCc
Q 029472 39 SGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTS 76 (193)
Q Consensus 39 dg~tI~LdsGsT~~~la~~L~~~~~~~~~~~lTVVTnS 76 (193)
+..++.+|+|.+..++|..|.+. | .++|+|+.+
T Consensus 166 ~~~vvIIGgG~~g~E~A~~l~~~---g--~~Vtli~~~ 198 (463)
T TIGR02053 166 PESLAVIGGGAIGVELAQAFARL---G--SEVTILQRS 198 (463)
T ss_pred CCeEEEECCCHHHHHHHHHHHHc---C--CcEEEEEcC
Confidence 46789999999999999999764 3 379999865
No 80
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=28.54 E-value=1e+02 Score=27.17 Aligned_cols=57 Identities=23% Similarity=0.262 Sum_probs=38.1
Q ss_pred hccCChHHHHHHHHHHHhhcCCCCCEE---EECcCHHHHHHHHHHHhHhhcCCCCCeEEEcCcHHHHHHH
Q 029472 17 ALSNGSSVLFRAAKHTVDTYITSGMVV---GLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEA 83 (193)
Q Consensus 17 ~~s~~~~ekk~iaa~~A~~~I~dg~tI---~LdsGsT~~~la~~L~~~~~~~~~~~lTVVTnSl~ia~~l 83 (193)
+++..+..|.+.++ ..-.+++|++| +.|-|.+..++|++-.. +++-||.|.+-....
T Consensus 52 tL~eAQ~~k~~~~~--~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v--------~V~GvTlS~~Q~~~~ 111 (283)
T COG2230 52 TLEEAQRAKLDLIL--EKLGLKPGMTLLDIGCGWGGLAIYAAEEYGV--------TVVGVTLSEEQLAYA 111 (283)
T ss_pred ChHHHHHHHHHHHH--HhcCCCCCCEEEEeCCChhHHHHHHHHHcCC--------EEEEeeCCHHHHHHH
Confidence 34455555555553 33467899964 45556888888886532 799999998876544
No 81
>COG0634 Hpt Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=28.40 E-value=50 Score=27.26 Aligned_cols=37 Identities=24% Similarity=0.216 Sum_probs=27.0
Q ss_pred hhcCCCCCEEE----ECcCHHHHHHHHHHHhHhhcCCCCCeEEEc
Q 029472 34 DTYITSGMVVG----LGSGQASAMAIEYMGRQLRAGALKDVIGIP 74 (193)
Q Consensus 34 ~~~I~dg~tI~----LdsGsT~~~la~~L~~~~~~~~~~~lTVVT 74 (193)
..-|++-+++. ||+|.|..++.+.|..+ |. +.++++|
T Consensus 88 d~di~grdVLiVeDIiDsG~TLs~i~~~l~~r---~a-~sv~i~t 128 (178)
T COG0634 88 DEDIKGRDVLIVEDIIDSGLTLSKVRDLLKER---GA-KSVRIAT 128 (178)
T ss_pred ccCCCCCeEEEEecccccChhHHHHHHHHHhC---CC-CeEEEEE
Confidence 34577888876 48999999999999875 22 3565554
No 82
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=28.10 E-value=2.1e+02 Score=19.90 Aligned_cols=17 Identities=29% Similarity=0.339 Sum_probs=13.4
Q ss_pred HHHhcCeEEEEEeCCCc
Q 029472 135 VLNAADKLVFMVSENQY 151 (193)
Q Consensus 135 i~~~S~~~ilLaD~SKf 151 (193)
++..|+.++++.+.+..
T Consensus 58 ~l~~ad~viv~~~~~~~ 74 (104)
T cd02042 58 ALAAADLVLIPVQPSPL 74 (104)
T ss_pred HHHHCCEEEEeccCCHH
Confidence 34789999999887765
No 83
>PRK06163 hypothetical protein; Provisional
Probab=28.06 E-value=70 Score=26.42 Aligned_cols=36 Identities=14% Similarity=-0.020 Sum_probs=25.6
Q ss_pred hhccCChHHHHHHHHHHHhhcCCCCCEEEECcCHHH
Q 029472 16 RALSNGSSVLFRAAKHTVDTYITSGMVVGLGSGQAS 51 (193)
Q Consensus 16 ~~~s~~~~ekk~iaa~~A~~~I~dg~tI~LdsGsT~ 51 (193)
-++|+...-+++.+.+.....+.+++.|..|+|++.
T Consensus 5 ~~~~~~~~~~~~~~i~~l~~~l~~~~~iv~D~G~~~ 40 (202)
T PRK06163 5 VTRSNAKVMNRFDLTCRLVAKLKDEEAVIGGIGNTN 40 (202)
T ss_pred cccCCCCCcCHHHHHHHHHHhcCCCCEEEECCCccH
Confidence 356664444554444778888898899999999744
No 84
>PRK14694 putative mercuric reductase; Provisional
Probab=27.89 E-value=1.7e+02 Score=26.77 Aligned_cols=33 Identities=15% Similarity=0.197 Sum_probs=27.8
Q ss_pred CCCEEEECcCHHHHHHHHHHHhHhhcCCCCCeEEEcCc
Q 029472 39 SGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTS 76 (193)
Q Consensus 39 dg~tI~LdsGsT~~~la~~L~~~~~~~~~~~lTVVTnS 76 (193)
+..++.+|+|-+..++|..|.+. | .++|+++..
T Consensus 178 ~~~vvViG~G~~G~E~A~~l~~~---g--~~Vtlv~~~ 210 (468)
T PRK14694 178 PERLLVIGASVVALELAQAFARL---G--SRVTVLARS 210 (468)
T ss_pred CCeEEEECCCHHHHHHHHHHHHc---C--CeEEEEECC
Confidence 56799999999999999999864 2 479999875
No 85
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=27.70 E-value=54 Score=25.17 Aligned_cols=29 Identities=21% Similarity=0.429 Sum_probs=20.4
Q ss_pred HHHHhhcCCCCCEEEE----CcCHHHHHHHHHHHh
Q 029472 30 KHTVDTYITSGMVVGL----GSGQASAMAIEYMGR 60 (193)
Q Consensus 30 a~~A~~~I~dg~tI~L----dsGsT~~~la~~L~~ 60 (193)
|+.-++.+++|++|.| |+|-|++ +|.+.+
T Consensus 5 a~~l~~~l~~g~vi~L~GdLGaGKTtf--~r~l~~ 37 (123)
T PF02367_consen 5 AKKLAQILKPGDVILLSGDLGAGKTTF--VRGLAR 37 (123)
T ss_dssp HHHHHHHHSS-EEEEEEESTTSSHHHH--HHHHHH
T ss_pred HHHHHHhCCCCCEEEEECCCCCCHHHH--HHHHHH
Confidence 4667788899999998 8887763 355543
No 86
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=27.34 E-value=2.1e+02 Score=25.88 Aligned_cols=33 Identities=18% Similarity=0.153 Sum_probs=27.7
Q ss_pred CCCEEEECcCHHHHHHHHHHHhHhhcCCCCCeEEEcCc
Q 029472 39 SGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTS 76 (193)
Q Consensus 39 dg~tI~LdsGsT~~~la~~L~~~~~~~~~~~lTVVTnS 76 (193)
+..++.+|+|.+..++|..|.+. | .++|+|..+
T Consensus 175 ~~~v~IiGgG~~g~E~A~~l~~~---g--~~Vtli~~~ 207 (461)
T PRK05249 175 PRSLIIYGAGVIGCEYASIFAAL---G--VKVTLINTR 207 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHc---C--CeEEEEecC
Confidence 66789999999999999999864 3 479999865
No 87
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=26.43 E-value=2.3e+02 Score=26.09 Aligned_cols=68 Identities=13% Similarity=0.215 Sum_probs=45.8
Q ss_pred CCCCCEEEECcCHHHHHHHHHHHhHhhcCCCCCeEEEcCcHHHHHHHHH-CC-CcEEEcCCC----CcccEEEecccc
Q 029472 37 ITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAV-AG-IPLDQYRDT----SQIDFAFDDADI 108 (193)
Q Consensus 37 I~dg~tI~LdsGsT~~~la~~L~~~~~~~~~~~lTVVTnSl~ia~~l~~-~~-i~v~~l~~~----~~~D~af~gadg 108 (193)
+++.-++.||+|-+...++++|... |. .+++|+.=+..-+..|+. .+ ..++.+.+. ...|+.|-+...
T Consensus 179 l~~kkvlviGaG~~a~~va~~L~~~---g~-~~I~V~nRt~~ra~~La~~~~~~~~~~~~~l~~~l~~aDiVI~aT~a 252 (414)
T PRK13940 179 ISSKNVLIIGAGQTGELLFRHVTAL---AP-KQIMLANRTIEKAQKITSAFRNASAHYLSELPQLIKKADIIIAAVNV 252 (414)
T ss_pred ccCCEEEEEcCcHHHHHHHHHHHHc---CC-CEEEEECCCHHHHHHHHHHhcCCeEecHHHHHHHhccCCEEEECcCC
Confidence 4555688889999999999999764 21 368888888787777754 34 455544321 246776665543
No 88
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=26.17 E-value=1.1e+02 Score=25.77 Aligned_cols=41 Identities=17% Similarity=0.289 Sum_probs=28.8
Q ss_pred CcCHHHH--HHHHHHHhHhhcCCCCCeEEEcCcHHH---HHHHHH-CCCcEEE
Q 029472 46 GSGQASA--MAIEYMGRQLRAGALKDVIGIPTSVAS---ANEAAV-AGIPLDQ 92 (193)
Q Consensus 46 dsGsT~~--~la~~L~~~~~~~~~~~lTVVTnSl~i---a~~l~~-~~i~v~~ 92 (193)
|+|-|++ .+.+.|.++ -++-||||.+.+ |..+.+ .+.+++.
T Consensus 23 GSGKTaLie~~~~~L~~~------~~~aVI~~Di~t~~Da~~l~~~~g~~i~~ 69 (202)
T COG0378 23 GSGKTALIEKTLRALKDE------YKIAVITGDIYTKEDADRLRKLPGEPIIG 69 (202)
T ss_pred CcCHHHHHHHHHHHHHhh------CCeEEEeceeechhhHHHHHhCCCCeeEE
Confidence 7887764 445666653 279999999988 446667 7777664
No 89
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=25.92 E-value=2.4e+02 Score=26.24 Aligned_cols=34 Identities=18% Similarity=0.253 Sum_probs=28.2
Q ss_pred CCCCEEEECcCHHHHHHHHHHHhHhhcCCCCCeEEEcCc
Q 029472 38 TSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTS 76 (193)
Q Consensus 38 ~dg~tI~LdsGsT~~~la~~L~~~~~~~~~~~lTVVTnS 76 (193)
.++.++.+|+|-+..++|..|.+. | .++|++..+
T Consensus 179 ~~~~vvIIGgG~iG~E~A~~l~~~---G--~~Vtli~~~ 212 (484)
T TIGR01438 179 CPGKTLVVGASYVALECAGFLAGI---G--LDVTVMVRS 212 (484)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHh---C--CcEEEEEec
Confidence 367899999999999999999864 3 479999864
No 90
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=25.44 E-value=61 Score=27.29 Aligned_cols=21 Identities=14% Similarity=0.259 Sum_probs=18.0
Q ss_pred CEEEECcCHHHHHHHHHHHhH
Q 029472 41 MVVGLGSGQASAMAIEYMGRQ 61 (193)
Q Consensus 41 ~tI~LdsGsT~~~la~~L~~~ 61 (193)
|+|.||+|+.-..+|.+|.+.
T Consensus 2 D~iIVGsG~~G~v~A~rLs~~ 22 (296)
T PF00732_consen 2 DYIIVGSGAGGSVVASRLSEA 22 (296)
T ss_dssp EEEEES-SHHHHHHHHHHTTS
T ss_pred CEEEECcCHHHHHHHHHHhhC
Confidence 789999999999999999863
No 91
>PRK10834 vancomycin high temperature exclusion protein; Provisional
Probab=25.25 E-value=2.9e+02 Score=23.78 Aligned_cols=62 Identities=16% Similarity=0.109 Sum_probs=42.4
Q ss_pred HHHHHhhc-CCCCCEEEECcCHHHHHHHHHHHhHhhcCCCCCeEEEcCcHHHHHH---HHHCCCcEEEc
Q 029472 29 AKHTVDTY-ITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANE---AAVAGIPLDQY 93 (193)
Q Consensus 29 aa~~A~~~-I~dg~tI~LdsGsT~~~la~~L~~~~~~~~~~~lTVVTnSl~ia~~---l~~~~i~v~~l 93 (193)
+++.+.++ |.+.+.+.=+.|.+|++=+.+..+.+. .+++++||+..+.... +...|++++.+
T Consensus 102 M~~yLi~~GVp~e~Ii~e~~s~nT~en~~~a~~i~~---~~~~iIVTq~fHm~RA~~ia~~~Gi~~~~~ 167 (239)
T PRK10834 102 MRKDLIAAGVDPSDIVLDYAGFRTLDSIVRTRKVFD---TNDFIIITQRFHCERALFIALHMGIQAQCY 167 (239)
T ss_pred HHHHHHHcCCCHHHEEecCCCCCHHHHHHHHHHHhC---CCCEEEECCHHHHHHHHHHHHHcCCceEEE
Confidence 44666666 788888888888877776665554321 1369999999998653 24567776654
No 92
>PF00156 Pribosyltran: Phosphoribosyl transferase domain; InterPro: IPR000836 The name PRT comes from phosphoribosyltransferase (PRTase) enzymes, which carry out phosphoryl transfer reactions on 5-phosphoribosyl-alpha1-pyrophosphate PRPP, an activated form of ribose-5-phosphate. Members of Phosphoribosyltransferase (PRT) are catalytic and are regulatory proteins involved in nucleotide synthesis and salvage []. This includes a range of diverse phosphoribosyl transferase enzymes including adenine phosphoribosyltransferase (2.4.2.7 from EC); hypoxanthine-guanine-xanthine phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase (2.4.2.8 from EC); ribose-phosphate pyrophosphokinase (2.7.6.1 from EC); amidophosphoribosyltransferase (2.4.2.14 from EC); orotate phosphoribosyltransferase (2.4.2.10 from EC);uracil phosphoribosyltransferase (2.4.2.9 from EC); and xanthine-guanine phosphoribosyltransferase (2.4.2.22 from EC). Not all PRT proteins are enzymes. For example, in some bacteria PRT proteins regulate the expression of purine and pyrimidine synthetic genes. Members of PRT are defined by the protein fold and by a short 13-residue sequence motif, The motif consists of four hydrophobic amino acids, two acidic amino acids and seven amino acids of variable character, usually including glycine and threonine. The motif has been predicted to be a PRPP-binding site in advance of structural information [, ]. Apart of this motif, different PRT proteins have a low level of sequence identity, less than 15%. The PRT sequence motif is only found in PRTases from the nucleotide synthesis and salvage pathways. Other PRTases, from the tryptophan, histidine and nicotinamide synthetic and salvage pathways, lack the PRT sequence motif and appear to be unrelated to each other and unrelated to the PRT family.; GO: 0009116 nucleoside metabolic process; PDB: 2JBH_A 1Y0B_D 2FXV_B 1GPH_1 1AO0_D 1ORO_B 1VCH_C 2WNS_A 2PRZ_B 2PS1_A ....
Probab=24.75 E-value=77 Score=22.89 Aligned_cols=17 Identities=24% Similarity=0.354 Sum_probs=15.0
Q ss_pred ECcCHHHHHHHHHHHhH
Q 029472 45 LGSGQASAMAIEYMGRQ 61 (193)
Q Consensus 45 LdsGsT~~~la~~L~~~ 61 (193)
+++|+|...++++|.+.
T Consensus 98 i~tG~Tl~~~~~~L~~~ 114 (125)
T PF00156_consen 98 IDTGGTLKEAIELLKEA 114 (125)
T ss_dssp ESSSHHHHHHHHHHHHT
T ss_pred EcccHHHHHHHHHHHhC
Confidence 47999999999999864
No 93
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=24.37 E-value=2e+02 Score=26.40 Aligned_cols=33 Identities=15% Similarity=0.113 Sum_probs=27.1
Q ss_pred CCCEEEECcCHHHHHHHHHHHhHhhcCCCCCeEEEcCc
Q 029472 39 SGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTS 76 (193)
Q Consensus 39 dg~tI~LdsGsT~~~la~~L~~~~~~~~~~~lTVVTnS 76 (193)
+..++.+|+|.+..++|..|.+. | .++|+|+.+
T Consensus 183 ~~~vvVvGgG~~g~E~A~~l~~~---g--~~Vtli~~~ 215 (475)
T PRK06327 183 PKKLAVIGAGVIGLELGSVWRRL---G--AEVTILEAL 215 (475)
T ss_pred CCeEEEECCCHHHHHHHHHHHHc---C--CeEEEEeCC
Confidence 56789999999999999998764 2 379999763
No 94
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=23.94 E-value=5.3e+02 Score=23.99 Aligned_cols=139 Identities=16% Similarity=0.162 Sum_probs=72.5
Q ss_pred hcCCCCC-EEEECcCHHHHHHHHHHHhHhhcCCCCCeEEEcCcHHHHHHHHHCCCcEEEcCCC-CcccEEEeccc---cc
Q 029472 35 TYITSGM-VVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLDQYRDT-SQIDFAFDDAD---II 109 (193)
Q Consensus 35 ~~I~dg~-tI~LdsGsT~~~la~~L~~~~~~~~~~~lTVVTnSl~ia~~l~~~~i~v~~l~~~-~~~D~af~gad---gv 109 (193)
.+.-.|. ++.+|.|..-..+|+.+... | .+++|+..+-.-+.+....|.++..+.+. ..+|++|..+. .+
T Consensus 207 ~~~l~Gk~VlViG~G~IG~~vA~~lr~~---G--a~ViV~d~dp~ra~~A~~~G~~v~~l~eal~~aDVVI~aTG~~~vI 281 (425)
T PRK05476 207 NVLIAGKVVVVAGYGDVGKGCAQRLRGL---G--ARVIVTEVDPICALQAAMDGFRVMTMEEAAELGDIFVTATGNKDVI 281 (425)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHhC---C--CEEEEEcCCchhhHHHHhcCCEecCHHHHHhCCCEEEECCCCHHHH
Confidence 3333566 56669999889999988753 3 25666544433334444456665443321 25788877542 12
Q ss_pred cCCCcceecCCC-----C-CC--cchhHHHHHH-----H--------HHhcCeEEEEEeCCCccCCCCCcccEEEecCCH
Q 029472 110 EEGTLVAVIGRQ-----Q-PK--GDESIIQEKS-----V--------LNAADKLVFMVSENQYKGVLDGSVPVLVQPVNW 168 (193)
Q Consensus 110 d~~~~~~i~g~g-----~-~~--~~ea~~k~k~-----i--------~~~S~~~ilLaD~SKf~~~l~~~~pvEv~p~~~ 168 (193)
+.+.+..++.++ | .+ .+...+.+.. + +...+++|||+|-.=.+--.+..-|.||...++
T Consensus 282 ~~~~~~~mK~GailiNvG~~d~Eid~~~L~~~~~~~~~v~~~v~~y~~~~g~~i~lLa~GrlvNl~~~~ghp~~vmd~sf 361 (425)
T PRK05476 282 TAEHMEAMKDGAILANIGHFDNEIDVAALEELAVKWREIKPQVDEYTLPDGKRIILLAEGRLVNLGAATGHPSEVMDMSF 361 (425)
T ss_pred HHHHHhcCCCCCEEEEcCCCCCccChHHHhhcCcceeecCCCceEEEeCCCCEEEEEeCCcccccCCCCCCcceeeCHHH
Confidence 211122222222 1 12 1222222110 0 123467888888655544545678999987766
Q ss_pred HHHHHHHHhh
Q 029472 169 METAEEIDDL 178 (193)
Q Consensus 169 ~~~~~~l~~~ 178 (193)
..-+=.+..+
T Consensus 362 a~q~l~~~~l 371 (425)
T PRK05476 362 ANQALAQIEL 371 (425)
T ss_pred HHHHHHHHHH
Confidence 5544444443
No 95
>TIGR02429 pcaI_scoA_fam 3-oxoacid CoA-transferase, A subunit. Various members of this family are characterized as the A subunits of succinyl-CoA:3-ketoacid-CoA transferase (EC 2.8.3.5), beta-ketoadipate:succinyl-CoA transferase (EC 2.8.3.6), acetyl-CoA:acetoacetate CoA transferase (EC 2.8.3.8), and butyrate-acetoacetate CoA-transferase (EC 2.8.3.9). This represents a very distinct clade with strong sequence conservation within the larger family defined by Pfam model pfam01144. The B subunit represents a different clade in pfam01144, described by TIGR02428. The two are found in general as tandem genes and occasionally as a fusion.
Probab=23.46 E-value=85 Score=26.53 Aligned_cols=45 Identities=18% Similarity=0.024 Sum_probs=29.5
Q ss_pred CcccEEEeccccccCCCcceecCCCCCCcchhHHHHHHHHHhcCeEEEEEeC
Q 029472 97 SQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVSE 148 (193)
Q Consensus 97 ~~~D~af~gadgvd~~~~~~i~g~g~~~~~ea~~k~k~i~~~S~~~ilLaD~ 148 (193)
.++|+||+=+..-|. .+|+..-+..... ...++.+|+++|+-++.
T Consensus 150 ~~~DvAlIha~~AD~-~GN~~~~~~~~~~------~~~~A~AAk~vIv~vE~ 194 (222)
T TIGR02429 150 LPADFALIKAHKADR-WGNLTYRKAARNF------GPIMAMAAKTTIAQVSQ 194 (222)
T ss_pred CCCcEEEEEecccCC-CCcEEEECccccC------CHHHHhhcCcEEEEEEE
Confidence 389999999999998 5776432221111 12245788888877663
No 96
>PF02639 DUF188: Uncharacterized BCR, YaiI/YqxD family COG1671; InterPro: IPR003791 This entry describes proteins of unknown function.
Probab=23.36 E-value=1.8e+02 Score=22.52 Aligned_cols=49 Identities=16% Similarity=0.116 Sum_probs=35.2
Q ss_pred CCCEEEECcCHHH--HHHHHHHHhHhhcCCCCCeEEEcCcHHHHHHHHHCCCcEEEcCC
Q 029472 39 SGMVVGLGSGQAS--AMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLDQYRD 95 (193)
Q Consensus 39 dg~tI~LdsGsT~--~~la~~L~~~~~~~~~~~lTVVTnSl~ia~~l~~~~i~v~~l~~ 95 (193)
...+|.+|.|.=. .+++++... | +| |||..+..|..|-..|..++.-.+
T Consensus 28 ~~~~i~Vd~g~DaaD~~I~~~~~~----g---Di-VITqDigLA~~~l~Kga~vl~~rG 78 (130)
T PF02639_consen 28 YVEMIVVDSGFDAADFYIVNHAKP----G---DI-VITQDIGLASLLLAKGAYVLNPRG 78 (130)
T ss_pred CeEEEEECCCCChHHHHHHHcCCC----C---CE-EEECCHHHHHHHHHCCCEEECCCC
Confidence 3568999999544 666666543 2 55 999999999988777777665433
No 97
>PF04900 Fcf1: Fcf1; InterPro: IPR006984 This family is comprises of uncharacterised eukaryotic proteins.
Probab=23.35 E-value=2e+02 Score=20.59 Aligned_cols=42 Identities=17% Similarity=0.323 Sum_probs=29.9
Q ss_pred cCHHHHHHHHHHHhHhhcCCCCC-eEEEcCcHHHHHHHH-HCCCcEEEcCC
Q 029472 47 SGQASAMAIEYMGRQLRAGALKD-VIGIPTSVASANEAA-VAGIPLDQYRD 95 (193)
Q Consensus 47 sGsT~~~la~~L~~~~~~~~~~~-lTVVTnSl~ia~~l~-~~~i~v~~l~~ 95 (193)
.+++--.+.....+ .+ ..|.||.-..-..|. .+|++++.+.+
T Consensus 50 ~~~addci~~~~~~-------~~~~~VaT~D~~Lr~~lr~~~GvPvi~l~~ 93 (101)
T PF04900_consen 50 PGSADDCILDLAGK-------NNKYIVATQDKELRRRLRKIPGVPVIYLRR 93 (101)
T ss_pred CcCHHHHHHHHhcc-------CCeEEEEecCHHHHHHHhcCCCCCEEEEEC
Confidence 34555555554432 24 889999999998887 78999988754
No 98
>TIGR02873 spore_ylxY probable sporulation protein, polysaccharide deacetylase family. Members of this protein family are most closely related to TIGR02764, a subset of polysaccharide deacetylase family proteins found in a species if and only if the species forms endospores like those of Bacillus subtilis or Clostridium tetani. This family is likewise restricted to spore-formers, but is not universal among them in having sequences with full-length matches to the model.
Probab=23.30 E-value=2.4e+02 Score=24.27 Aligned_cols=42 Identities=14% Similarity=0.036 Sum_probs=28.8
Q ss_pred HHHhhcCCCCCEEEE-CcCHHHHHHHHHHHhHhhcCCCCCeEEEcCc
Q 029472 31 HTVDTYITSGMVVGL-GSGQASAMAIEYMGRQLRAGALKDVIGIPTS 76 (193)
Q Consensus 31 ~~A~~~I~dg~tI~L-dsGsT~~~la~~L~~~~~~~~~~~lTVVTnS 76 (193)
+.+.+.+++|++|.+ |...|+..+-+.|... +. +..++||=|
T Consensus 222 ~~v~~~~~~G~IILmHd~~~T~~aL~~iI~~L-k~---kGy~fvtl~ 264 (268)
T TIGR02873 222 NRVLSKIHPGAMVLMHPTASSTEGLEEMITII-KE---KGYKIGTIT 264 (268)
T ss_pred HHHHhcCCCCcEEEEcCCccHHHHHHHHHHHH-HH---CCCEEEeHH
Confidence 677788899999988 6667776665555532 21 367777754
No 99
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=23.25 E-value=3.7e+02 Score=21.05 Aligned_cols=42 Identities=17% Similarity=0.175 Sum_probs=29.7
Q ss_pred CCCCCEEEECcCHHHHHHHHHHHhHhhcCCCCCeEEEcCcHHHHHHHHH
Q 029472 37 ITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAV 85 (193)
Q Consensus 37 I~dg~tI~LdsGsT~~~la~~L~~~~~~~~~~~lTVVTnSl~ia~~l~~ 85 (193)
++..-++.+|+|......++.|.+. | .++|||.. +...++..
T Consensus 11 l~~~~vlVvGGG~va~rka~~Ll~~---g--a~V~VIsp--~~~~~l~~ 52 (157)
T PRK06719 11 LHNKVVVIIGGGKIAYRKASGLKDT---G--AFVTVVSP--EICKEMKE 52 (157)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhC---C--CEEEEEcC--ccCHHHHh
Confidence 3566689999999999999988653 2 38999943 33344443
No 100
>PRK13748 putative mercuric reductase; Provisional
Probab=23.18 E-value=2.6e+02 Score=26.13 Aligned_cols=33 Identities=18% Similarity=0.187 Sum_probs=27.2
Q ss_pred CCCEEEECcCHHHHHHHHHHHhHhhcCCCCCeEEEcCc
Q 029472 39 SGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTS 76 (193)
Q Consensus 39 dg~tI~LdsGsT~~~la~~L~~~~~~~~~~~lTVVTnS 76 (193)
+..++.+|+|.+..++|..|.+. | .++|+|+.+
T Consensus 270 ~~~vvViGgG~ig~E~A~~l~~~---g--~~Vtli~~~ 302 (561)
T PRK13748 270 PERLAVIGSSVVALELAQAFARL---G--SKVTILARS 302 (561)
T ss_pred CCeEEEECCCHHHHHHHHHHHHc---C--CEEEEEecC
Confidence 56789999999999999999764 3 479999854
No 101
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=23.16 E-value=2.7e+02 Score=25.51 Aligned_cols=33 Identities=15% Similarity=0.108 Sum_probs=27.5
Q ss_pred CCCEEEECcCHHHHHHHHHHHhHhhcCCCCCeEEEcCc
Q 029472 39 SGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTS 76 (193)
Q Consensus 39 dg~tI~LdsGsT~~~la~~L~~~~~~~~~~~lTVVTnS 76 (193)
+..++.+|+|-+-.++|..|.+. | .++|+|..+
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~---g--~~Vtli~~~ 198 (450)
T TIGR01421 166 PKRVVIVGAGYIAVELAGVLHGL---G--SETHLVIRH 198 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHc---C--CcEEEEecC
Confidence 56789999999999999999864 2 489999865
No 102
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=23.06 E-value=87 Score=24.71 Aligned_cols=39 Identities=21% Similarity=0.161 Sum_probs=18.2
Q ss_pred ChHHHHHHHHHHHhhc-CCCCCEE---EECcCHHHHHHHHHHHh
Q 029472 21 GSSVLFRAAKHTVDTY-ITSGMVV---GLGSGQASAMAIEYMGR 60 (193)
Q Consensus 21 ~~~ekk~iaa~~A~~~-I~dg~tI---~LdsGsT~~~la~~L~~ 60 (193)
|...|-..+.+....+ -.+||+| |.|+|||..+ |..|.+
T Consensus 172 h~~~kP~~l~~~lI~~~t~~gdiVlDpF~GSGTT~~a-a~~l~R 214 (231)
T PF01555_consen 172 HPTQKPVELIERLIKASTNPGDIVLDPFAGSGTTAVA-AEELGR 214 (231)
T ss_dssp -TT-S-HHHHHHHHHHHS-TT-EEEETT-TTTHHHHH-HHHTT-
T ss_pred eeecCCHHHHHHHHHhhhccceeeehhhhccChHHHH-HHHcCC
Confidence 3444443333444433 4689988 4689977665 455654
No 103
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=23.02 E-value=2.7e+02 Score=24.31 Aligned_cols=50 Identities=18% Similarity=0.075 Sum_probs=34.5
Q ss_pred CCCEEEECcCHHHHHHHHHHHhHhhcCCCCCeEEEcCc--------HHHHHHHHHCCCcEEE
Q 029472 39 SGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTS--------VASANEAAVAGIPLDQ 92 (193)
Q Consensus 39 dg~tI~LdsGsT~~~la~~L~~~~~~~~~~~lTVVTnS--------l~ia~~l~~~~i~v~~ 92 (193)
+..++.+|+|-+..++|..|... |. +++|+|... -.....|..++++++.
T Consensus 172 g~~vvViG~G~~g~e~A~~l~~~---g~-~~Vtvi~~~~~~~~~~~~~~~~~l~~~gi~i~~ 229 (352)
T PRK12770 172 GKKVVVVGAGLTAVDAALEAVLL---GA-EKVYLAYRRTINEAPAGKYEIERLIARGVEFLE 229 (352)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc---CC-CeEEEEeecchhhCCCCHHHHHHHHHcCCEEee
Confidence 45688999999999999988653 21 249999642 2333456777887654
No 104
>PTZ00052 thioredoxin reductase; Provisional
Probab=22.85 E-value=2.5e+02 Score=26.17 Aligned_cols=33 Identities=18% Similarity=0.209 Sum_probs=27.4
Q ss_pred CCCEEEECcCHHHHHHHHHHHhHhhcCCCCCeEEEcCc
Q 029472 39 SGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTS 76 (193)
Q Consensus 39 dg~tI~LdsGsT~~~la~~L~~~~~~~~~~~lTVVTnS 76 (193)
++.++.+|+|-+-.++|..|... | .++|+|..+
T Consensus 182 ~~~vvIIGgG~iG~E~A~~l~~~---G--~~Vtli~~~ 214 (499)
T PTZ00052 182 PGKTLIVGASYIGLETAGFLNEL---G--FDVTVAVRS 214 (499)
T ss_pred CCeEEEECCCHHHHHHHHHHHHc---C--CcEEEEEcC
Confidence 56799999999999999999864 3 479999753
No 105
>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD). SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity.
Probab=22.48 E-value=1.4e+02 Score=23.61 Aligned_cols=30 Identities=7% Similarity=-0.015 Sum_probs=25.1
Q ss_pred HHHhhcCCCCCEEEECcCHHHHHHHHHHHh
Q 029472 31 HTVDTYITSGMVVGLGSGQASAMAIEYMGR 60 (193)
Q Consensus 31 ~~A~~~I~dg~tI~LdsGsT~~~la~~L~~ 60 (193)
+...+.+.+..+|..|+|++..+..+++..
T Consensus 8 ~~l~~~l~~~~ivv~d~g~~~~~~~~~~~~ 37 (175)
T cd02009 8 RALPDHLPEGSQLFVGNSMPIRDLDLFALP 37 (175)
T ss_pred HHHHHhCCCCCeEEEECCHHHHHHHHccCc
Confidence 455666788889999999999999998864
No 106
>PF02698 DUF218: DUF218 domain; InterPro: IPR003848 This domain of unknown function is found in several uncharacterised proteins.; PDB: 3CA8_A.
Probab=22.43 E-value=1.8e+02 Score=22.00 Aligned_cols=45 Identities=7% Similarity=0.095 Sum_probs=18.2
Q ss_pred CCCCCEEEECcCHHHHHHHHHHHhHhhcCCCCCeEEEcCcHHHHH
Q 029472 37 ITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASAN 81 (193)
Q Consensus 37 I~dg~tI~LdsGsT~~~la~~L~~~~~~~~~~~lTVVTnSl~ia~ 81 (193)
|.+..++.-+.+++|.+=++++.+..+....+++.+||+......
T Consensus 68 vp~~~I~~e~~s~~T~ena~~~~~~~~~~~~~~iilVT~~~H~~R 112 (155)
T PF02698_consen 68 VPEERIILEPKSTNTYENARFSKRLLKERGWQSIILVTSPYHMRR 112 (155)
T ss_dssp --GGGEEEE----SHHHHHHHHHHHHHT-SSS-EEEE--CCCHHH
T ss_pred cchheeEccCCCCCHHHHHHHHHHHHHhhcCCeEEEECCHHHHHH
Confidence 555666666666665554444443322111246777777766644
No 107
>PF05991 NYN_YacP: YacP-like NYN domain; InterPro: IPR010298 This family consists of several hypothetical bacterial proteins as well as some uncharacterised sequences from Arabidopsis thaliana. The function of this family is unknown.
Probab=22.17 E-value=2.6e+02 Score=22.26 Aligned_cols=51 Identities=20% Similarity=0.124 Sum_probs=32.8
Q ss_pred EEEECcCHHHHHHHHHHHhHhhcCCCCCeEEEcCcHHHHHHHHHCCCcEEEc
Q 029472 42 VVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLDQY 93 (193)
Q Consensus 42 tI~LdsGsT~~~la~~L~~~~~~~~~~~lTVVTnSl~ia~~l~~~~i~v~~l 93 (193)
+||=..|.|.=.+++.+....... ..++||||+.-.+.......|...+.-
T Consensus 70 Vvft~~~~tAD~~Ie~~v~~~~~~-~~~v~VVTSD~~iq~~~~~~GA~~iss 120 (166)
T PF05991_consen 70 VVFTKEGETADDYIERLVRELKNR-PRQVTVVTSDREIQRAARGRGAKRISS 120 (166)
T ss_pred EEECCCCCCHHHHHHHHHHHhccC-CCeEEEEeCCHHHHHHHhhCCCEEEcH
Confidence 444455677766666555432210 148999999988887777777766653
No 108
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=22.14 E-value=2.6e+02 Score=25.62 Aligned_cols=33 Identities=18% Similarity=0.184 Sum_probs=27.0
Q ss_pred CCCEEEECcCHHHHHHHHHHHhHhhcCCCCCeEEEcCc
Q 029472 39 SGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTS 76 (193)
Q Consensus 39 dg~tI~LdsGsT~~~la~~L~~~~~~~~~~~lTVVTnS 76 (193)
+..++.+|+|-+..++|..|.+. | .++|+|+.+
T Consensus 177 ~~~vvVIGgG~ig~E~A~~l~~~---g--~~Vtli~~~ 209 (466)
T PRK07845 177 PEHLIVVGSGVTGAEFASAYTEL---G--VKVTLVSSR 209 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHc---C--CeEEEEEcC
Confidence 46789999999999999999764 2 479999864
No 109
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=21.86 E-value=1.1e+02 Score=26.38 Aligned_cols=40 Identities=30% Similarity=0.311 Sum_probs=24.4
Q ss_pred cCCCCCE-EEE--CcCHHHHHHHHHHHhHhhcCCCCCeEEEcCcHHHHHHH
Q 029472 36 YITSGMV-VGL--GSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEA 83 (193)
Q Consensus 36 ~I~dg~t-I~L--dsGsT~~~la~~L~~~~~~~~~~~lTVVTnSl~ia~~l 83 (193)
-|++|+. +=| |-|.+...+|+.-.- ++|.||.|-.-...+
T Consensus 59 ~l~~G~~vLDiGcGwG~~~~~~a~~~g~--------~v~gitlS~~Q~~~a 101 (273)
T PF02353_consen 59 GLKPGDRVLDIGCGWGGLAIYAAERYGC--------HVTGITLSEEQAEYA 101 (273)
T ss_dssp T--TT-EEEEES-TTSHHHHHHHHHH----------EEEEEES-HHHHHHH
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCc--------EEEEEECCHHHHHHH
Confidence 3889994 334 445777777776532 699999998877654
No 110
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=20.87 E-value=3.1e+02 Score=25.08 Aligned_cols=33 Identities=15% Similarity=0.167 Sum_probs=26.8
Q ss_pred CCCEEEECcCHHHHHHHHHHHhHhhcCCCCCeEEEcCc
Q 029472 39 SGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTS 76 (193)
Q Consensus 39 dg~tI~LdsGsT~~~la~~L~~~~~~~~~~~lTVVTnS 76 (193)
+..++.+|+|-+..++|..|.+. | .++|+|..+
T Consensus 180 ~~~vvIIGgG~~G~E~A~~l~~~---g--~~Vtli~~~ 212 (472)
T PRK05976 180 PKSLVIVGGGVIGLEWASMLADF---G--VEVTVVEAA 212 (472)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc---C--CeEEEEEec
Confidence 56789999999999999999864 2 379999643
No 111
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=20.62 E-value=3.5e+02 Score=24.69 Aligned_cols=33 Identities=18% Similarity=0.104 Sum_probs=26.5
Q ss_pred CCCCEEEECcCHHHHHHHHHHHhHhhcCCCCCeEEEcC
Q 029472 38 TSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPT 75 (193)
Q Consensus 38 ~dg~tI~LdsGsT~~~la~~L~~~~~~~~~~~lTVVTn 75 (193)
.+..++.+|+|-+..++|..|.+. | .++|+|..
T Consensus 171 ~~~~vvVIGgG~ig~E~A~~l~~~---G--~~Vtlv~~ 203 (466)
T PRK07818 171 LPKSIVIAGAGAIGMEFAYVLKNY---G--VDVTIVEF 203 (466)
T ss_pred CCCeEEEECCcHHHHHHHHHHHHc---C--CeEEEEec
Confidence 357889999999999999999764 3 37888754
No 112
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=20.41 E-value=2.7e+02 Score=25.51 Aligned_cols=31 Identities=19% Similarity=0.170 Sum_probs=25.5
Q ss_pred CCCEEEECcCHHHHHHHHHHHhHhhcCCCCCeEEEc
Q 029472 39 SGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIP 74 (193)
Q Consensus 39 dg~tI~LdsGsT~~~la~~L~~~~~~~~~~~lTVVT 74 (193)
+..++.+|+|-+..++|..+.+. | .++|+|.
T Consensus 174 ~~~vvIIGgG~ig~E~A~~l~~~---G--~~Vtlie 204 (466)
T PRK06115 174 PKHLVVIGAGVIGLELGSVWRRL---G--AQVTVVE 204 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHc---C--CeEEEEe
Confidence 56788899999999999998754 3 3799985
No 113
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=20.03 E-value=1.4e+02 Score=25.08 Aligned_cols=40 Identities=30% Similarity=0.273 Sum_probs=23.8
Q ss_pred hhcCCCCCEEEE--CcCHH--HHHHHHHHHhHhhcCCCCCeEEEcCcHH
Q 029472 34 DTYITSGMVVGL--GSGQA--SAMAIEYMGRQLRAGALKDVIGIPTSVA 78 (193)
Q Consensus 34 ~~~I~dg~tI~L--dsGsT--~~~la~~L~~~~~~~~~~~lTVVTnSl~ 78 (193)
..+|+++|++.+ ++|.| +..+++++++. | -.+..||..-+
T Consensus 81 lg~i~~~DvviaiS~SGeT~el~~~~~~aK~~---g--~~liaiT~~~~ 124 (202)
T COG0794 81 LGMITPGDVVIAISGSGETKELLNLAPKAKRL---G--AKLIAITSNPD 124 (202)
T ss_pred ccCCCCCCEEEEEeCCCcHHHHHHHHHHHHHc---C--CcEEEEeCCCC
Confidence 467899997766 66654 35566666653 2 14555554433
Done!